Psyllid ID: psy16881

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MHEFPMGDGPSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRGNLSVDVPLNYCC
Secondary Structure (PSIPRED)
cEEEEcccccEEEcccccEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEccccccccccccEEEEEEEcccccEEEEEccccEEEEEEccccEEEcccccccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEEccccEEEEEcccccEEcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccEEEEEccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEcccccccccEEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEcccccEEEEcccccEEEEEEcccccEEEEcccccc
Coil and Loop (DISEMBL)
mhefpmgdgpslfngtelilrgsvhigsnmrcvrfspdtrllatggddetvtvWRSDDLSLIMEtndrghtqgriegwgrvpacplcrtrvFSTFVKqiiptrvgvygqdsetvgrhtsavTSVRFNHKSSLLvsgsvdktvklwdvpsltciktleshtryvtcctfscddsllasgsndktVTIWDMLATLLasgsndktvtiwdmrgnlsvdvplnycc
Flexible Loop (DISEMBL)
mhefpmgdgpslFNGTELILRGSVHIGSNMRCVRFSPDTrllatggddetvtvWRSDDLSLIMETndrghtqgriegwgrvpacPLCRTRVFSTfvkqiiptrvgvygqdsetvgrhtsavtsvrfnhkssllvsgsvdktvklwdvPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMrgnlsvdvplnycc
Low Complexity Region (SEG)
MHEFPMGDGPSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRGNLSVDVPLNYCC
Disordered region (IsUnstruct)
***********LFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRGNLSVDVPLNYC*
Disordered Region (DISOPRED)
MHEFPMGDGPSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRGNLSVDVPLNYCC
Disordered Region (DISEMBL)
********GPSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRGNLSVDVPLNYCC
Disordered Region (DISPRO)
MHEFPMGDGPSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRGNLSVDVPL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHEFPMGDGPSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRGNLSVDVPLNYCC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
Q00808	1356	Vegetative incompatibilit	no	N/A	0.783	0.128	0.343	1e-18
Q8YRI1	1526	Uncharacterized WD repeat	no	N/A	0.707	0.102	0.322	2e-18
Q7ZUV2	694	Katanin p80 WD40 repeat-c	yes	N/A	0.716	0.229	0.329	2e-17
Q8YV57	1683	Uncharacterized WD repeat	no	N/A	0.752	0.099	0.287	3e-17
Q17963	376	WD repeat-containing prot	yes	N/A	0.666	0.393	0.356	4e-17
Q8YTC2	1258	Uncharacterized WD repeat	no	N/A	0.779	0.137	0.330	6e-17
Q5ZIU8	657	Katanin p80 WD40 repeat-c	yes	N/A	0.707	0.238	0.326	3e-16
A8X8C6	368	WD repeat-containing prot	N/A	N/A	0.747	0.451	0.350	6e-16
A2CEH0	490	POC1 centriolar protein h	no	N/A	0.788	0.357	0.297	8e-15
Q54KL5	335	WD repeat-containing prot	yes	N/A	0.711	0.471	0.335	1e-14

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 93.6 bits (231), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 95/204 (46%), Gaps = 30/204 (14%)

Query: 27   GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPL 86
            G ++  V FSPD   +A+G DD+T+ +W  D  S        GH  GR++     P    
Sbjct: 883  GGSVWSVAFSPDRERVASGSDDKTIKIW--DAASGTCTQTLEGHG-GRVQSVAFSPDG-- 937

Query: 87   CRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWD 146
               RV S      I       G  ++T+  H S+V SV F+     + SGS DKT+K+WD
Sbjct: 938  --QRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWD 995

Query: 147  VPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA--------------- 191
              S TC +TLE H   V    FS D   +ASGS+DKT+ IWD  +               
Sbjct: 996  TASGTCTQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQ 1055

Query: 192  --------TLLASGSNDKTVTIWD 207
                      +ASGS+D T+ IWD
Sbjct: 1056 SVVFSPDGQRVASGSDDHTIKIWD 1079

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.
Podospora anserina (taxid: 5145)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 105/217 (48%), Gaps = 60/217 (27%)

Query: 30   MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT 89
            +R V FSPD  +LA+GGDD+ V +W   D+S        G+    ++G+         R 
Sbjct: 1077 VRSVVFSPDGAMLASGGDDQIVRLW---DIS-------SGNCLYTLQGY-----TSWVRF 1121

Query: 90   RVFSTFVKQIIPTRVGVYGQDSETVGR---------------HTSAVTSVRFNHKSSLLV 134
             VFS       P  V +    S+ + R               HT+ V +V F+   + L 
Sbjct: 1122 LVFS-------PNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLA 1174

Query: 135  SGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA--- 191
            SGS D+TV+LWD+ S  C+  L+ HT +V    F+ D S LASGS+D+TV +W++ +   
Sbjct: 1175 SGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKC 1234

Query: 192  --------------------TLLASGSNDKTVTIWDM 208
                                ++LASGS+DKTV +WD+
Sbjct: 1235 LCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDI 1271

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q7ZUV2|KTNB1_DANRE Katanin p80 WD40 repeat-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 92/197 (46%), Gaps = 38/197 (19%)

Query: 40  RLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIE---GWGRVPACPLCRT-RVFSTF 95
           RLLATGG+D  V +W     + IM         G I+      RV A  L  + R++   
Sbjct: 34  RLLATGGEDCRVNIWAVSKPNCIMSLTGHTSAVGCIQFNSSEERVVAGSLSGSLRLWDLE 93

Query: 96  VKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKT 155
             +I+ T +G           H ++++S+ F+     L SGSVD  +KLWDV    C+  
Sbjct: 94  AAKILRTLMG-----------HKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFR 142

Query: 156 LESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA-----------------------T 192
            + HT+ V C  FS D   LAS S+D TV +WD++A                        
Sbjct: 143 YKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQFHPNEY 202

Query: 193 LLASGSNDKTVTIWDMR 209
           LLASGS D+TV +WD+ 
Sbjct: 203 LLASGSADRTVKLWDLE 219

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Danio rerio (taxid: 7955)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 88.6 bits (218), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 38/205 (18%)

Query: 33   VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRI----EGWGRVPACPLCR 88
            V FSPD + +A+GG D+T+ +W++ D +L+        T   +    +G     A     
Sbjct: 1119 VSFSPDGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVYFSPDGKNLASASSDHS 1178

Query: 89   TRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP 148
             +++ T   Q++ T  G           H++ V +VRF+     + +GS DKTVKLW   
Sbjct: 1179 IKLWDTTSGQLLMTLTG-----------HSAGVITVRFSPDGQTIAAGSEDKTVKLWHRQ 1227

Query: 149  SLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW-----DMLATL---------- 193
                +KTL  H  +V   +FS D   LAS S DKT+ +W      ++ TL          
Sbjct: 1228 DGKLLKTLNGHQDWVNSLSFSPDGKTLASASADKTIKLWRIADGKLVKTLKGHNDSVWDV 1287

Query: 194  --------LASGSNDKTVTIWDMRG 210
                    +AS S D T+ +W+  G
Sbjct: 1288 NFSSDGKAIASASRDNTIKLWNRHG 1312

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q17963|TG125_CAEEL WD repeat-containing protein tag-125 OS=Caenorhabditis elegans GN=tag-125 PE=4 SV=1

 Score = 88.2 bits (217), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 9/157 (5%)

Query: 33  VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIE-GWGRVPACPLCRTRV 91
            +FSP  + L T   D+TV +W  D +  I E    GH  G  +  W     C +  +  
Sbjct: 93  AKFSPCGKYLGTSSADKTVKIWNMDHM--ICERTLTGHKLGVNDIAWSSDSRCVVSASDD 150

Query: 92  FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
            +  + +I+ +R+      ++T+  H + V    FN +SSL+VSGS D++V++WDV +  
Sbjct: 151 KTLKIFEIVTSRM------TKTLKGHNNYVFCCNFNPQSSLVVSGSFDESVRIWDVKTGM 204

Query: 152 CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
           CIKTL +H+  V+  +F+ D SL+ASGS D  V IWD
Sbjct: 205 CIKTLPAHSDPVSAVSFNRDGSLIASGSYDGLVRIWD 241

Caenorhabditis elegans (taxid: 6239)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 87.4 bits (215), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 93/203 (45%), Gaps = 30/203 (14%)

Query: 30  MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT 89
           +RCV FSPD   LA+   D T+ +W       +     + HT     GW R  A      
Sbjct: 771 VRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTL--KSHT-----GWVRSVAFSADGQ 823

Query: 90  RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS 149
            + S    + I       G+  +T   HT++V S+ ++  S +LVSGS D+T+KLWD  +
Sbjct: 824 TLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQT 883

Query: 150 LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA------------------ 191
             CIKTL  HT  V    FS D   LA  S D++V +W+                     
Sbjct: 884 HICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVA 943

Query: 192 -----TLLASGSNDKTVTIWDMR 209
                 +LASGSNDKTV +WD +
Sbjct: 944 FSPDRQILASGSNDKTVKLWDWQ 966

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q5ZIU8|KTNB1_CHICK Katanin p80 WD40 repeat-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2

 Score = 85.1 bits (209), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 90/199 (45%), Gaps = 42/199 (21%)

Query: 40  RLLATGGDDETVTVWRSDDLSLIMETNDRGHT------QGRIEGWGRVPACPLCRTRVFS 93
           RLLATGGDD  V VW  +  + +M     GHT      Q   +    V        RV+ 
Sbjct: 34  RLLATGGDDCRVNVWSVNKPNCVMSLT--GHTTPIESLQISAKEELIVAGSQSGSIRVWD 91

Query: 94  TFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCI 153
               +I+ T +G           H + + S+ F+   S + SGS+D  +KLWDV    CI
Sbjct: 92  LEAAKILRTLLG-----------HKANICSLDFHPYGSFVASGSLDTDIKLWDVRRKGCI 140

Query: 154 KTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA---------------------- 191
              +SHT+ V C  FS D   LAS ++D TV +WD+ A                      
Sbjct: 141 FKYKSHTQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKVMFEFTGHSGPVNVVEFHPS 200

Query: 192 -TLLASGSNDKTVTIWDMR 209
             LLASGS+D+T+  WD+ 
Sbjct: 201 EYLLASGSSDRTIRFWDLE 219

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Gallus gallus (taxid: 9031)

>sp|A8X8C6|TG125_CAEBR WD repeat-containing protein tag-125 OS=Caenorhabditis briggsae GN=tag-125 PE=4 SV=1

 Score = 84.3 bits (207), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 90/174 (51%), Gaps = 8/174 (4%)

Query: 15  GTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGR 74
           G +LI     H  S +  V+FSP  + L T   D+TV +W   DLS   E    GH  G 
Sbjct: 68  GYKLISTIEGHTKS-ISAVKFSPCGKFLGTSSADKTVKIWNMSDLSC--ERTLTGHKLGV 124

Query: 75  IEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLV 134
            +      +  +       T     +PT      + ++T+  HT+ V    FN +SSL+V
Sbjct: 125 NDFAWSADSKSIVTASDDKTLKIYEVPTV-----KMAKTLKGHTNYVFCCNFNPQSSLVV 179

Query: 135 SGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
           SGS D++V++WDV +  C+KTL +H+  V+  +F+ D SL+ SGS D  V IWD
Sbjct: 180 SGSFDESVRIWDVRTGMCVKTLPAHSDPVSAVSFNRDGSLITSGSYDGLVRIWD 233

Caenorhabditis briggsae (taxid: 6238)

>sp|A2CEH0|POC1B_DANRE POC1 centriolar protein homolog B OS=Danio rerio GN=poc1b PE=2 SV=1

 Score = 80.5 bits (197), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 92/205 (44%), Gaps = 30/205 (14%)

Query: 30  MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT 89
           + C  F+P+ + LATG  D+++ +W     +        GHT   I G    P+  L  +
Sbjct: 21  ISCADFNPNNKQLATGSCDKSLMIWNLAPKARAFRF--VGHTD-VITGVNFAPSGSLVAS 77

Query: 90  RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS 149
                 V+   P+  G    +S     HT++V SV F+     LV+ S DK+VK+W V  
Sbjct: 78  SSRDQTVRLWTPSIKG----ESTVFKAHTASVRSVHFSRDGQRLVTASDDKSVKVWGVER 133

Query: 150 LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA------------------ 191
              + +L  HT +V C  FS D  L+AS  +D+TV +WD  +                  
Sbjct: 134 KKFLYSLNRHTNWVRCARFSPDGRLIASCGDDRTVRLWDTSSHQCINIFTDYGGSATFVD 193

Query: 192 -----TLLASGSNDKTVTIWDMRGN 211
                T +AS   D T+ IWD+R N
Sbjct: 194 FNSSGTCIASSGADNTIKIWDIRTN 218

Required for ciliogenesis.

Danio rerio (taxid: 7955)

>sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 90/170 (52%), Gaps = 12/170 (7%)

Query: 20  LRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIE-GW 78
           L+G  H+ S +  V+FSPD + LA+   D+T+ +W + D     E    GH +G  +  W
Sbjct: 42  LKG--HLKS-ISSVKFSPDGKWLASASADKTIKIWGAYDGKF--ERTLEGHKEGISDIAW 96

Query: 79  GRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV 138
            +  +  +C      T     + +     G+  +T+  H   V  V FN +S+L+VSGS 
Sbjct: 97  SQ-DSKLICSASDDKTIKIWDVES-----GKMVKTLKGHKEYVFGVSFNPQSNLIVSGSF 150

Query: 139 DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
           D+ V++WDV +  C K + +H+  VT   F+ D +L+ SGS D TV IWD
Sbjct: 151 DENVRIWDVNTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWD 200

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
115443476	1316	hypothetical protein ATEG_09923 [Aspergi	0.761	0.128	0.354	1e-19
148655047	696	WD-40 repeat-containing protein [Roseifl	0.788	0.251	0.373	2e-19
281410781	504	HET-E [Podospora anserina]	0.783	0.345	0.352	2e-19
347836621	1218	hypothetical protein [Botryotinia fuckel	0.788	0.143	0.358	4e-19
281410773	504	HET-E [Podospora anserina]	0.783	0.345	0.352	7e-19
281410771	462	HET-E [Podospora anserina]	0.783	0.376	0.352	9e-19
281410783	504	HET-E [Podospora anserina]	0.783	0.345	0.352	9e-19
307152491	1270	WD40 repeat-containing protein [Cyanothe	0.905	0.158	0.308	1e-18
281410777	462	HET-E [Podospora anserina]	0.783	0.376	0.352	1e-18
281410785	455	HET-E [Podospora anserina]	0.783	0.382	0.352	1e-18

>gi|115443476|ref|XP_001218545.1| hypothetical protein ATEG_09923 [Aspergillus terreus NIH2624] gi|114188414|gb|EAU30114.1| hypothetical protein ATEG_09923 [Aspergillus terreus NIH2624]

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 103/203 (50%), Gaps = 34/203 (16%)

Query: 30   MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT 89
            ++   FSPD RLLA+G DD+T+ VW  D  +  ++   +G+T+  +     V   P  R 
Sbjct: 819  IQSAAFSPDGRLLASGSDDKTIRVW--DPATGALQQTLKGYTKSVLS----VTFSPDGRL 872

Query: 90   RVFSTFVKQIIPTRV--GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV 147
                +  K I   RV     G   +T+  HTS + SV F+    LL SGS D+T+++WD 
Sbjct: 873  LASGSNDKTI---RVWDPATGALQQTLNGHTSWIQSVAFSPDGRLLASGSSDETIRIWDP 929

Query: 148  PSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML----------------- 190
             + T  +TL+ HT+ V   TFS D  LLASGS DKT+ +WD                   
Sbjct: 930  ATATLQQTLKGHTKSVLSVTFSPDGRLLASGSYDKTIRVWDPATGALQQTLKGRIDSVRS 989

Query: 191  ------ATLLASGSNDKTVTIWD 207
                    LLASGS+D+T+ +WD
Sbjct: 990  VTFSPDGRLLASGSSDETIRVWD 1012

Source: Aspergillus terreus NIH2624

Species: Aspergillus terreus

Genus: Aspergillus

Family: Trichocomaceae

Order: Eurotiales

Class: Eurotiomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|148655047|ref|YP_001275252.1| WD-40 repeat-containing protein [Roseiflexus sp. RS-1] gi|148567157|gb|ABQ89302.1| ribosome assembly protein 4 (RSA4) [Roseiflexus sp. RS-1]

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/201 (37%), Positives = 95/201 (47%), Gaps = 26/201 (12%)

Query: 32  CVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRV 91
            V F+PD RLLA+G  D TV +W +    L+      G + G    W  V   P  R  +
Sbjct: 457 SVAFAPDGRLLASGARDSTVRLWDAASGQLLRTLKGHGSSHGS-SVWS-VAFSPDGRL-L 513

Query: 92  FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
            S  +   I       GQ   T+  HTS V SV F+    LL SG+ D TV+LWDV S  
Sbjct: 514 ASGSLDNTIRLWDAASGQLVRTLEGHTSDVNSVAFSPDGRLLASGARDSTVRLWDVASGQ 573

Query: 152 CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA-------------------- 191
            ++TLE HT +V    FS D  LLASGS DKTV +WD  +                    
Sbjct: 574 LLRTLEGHTDWVNSVAFSPDGRLLASGSPDKTVRLWDAASGQLVRTLEGHTGRVLSVAFS 633

Query: 192 ---TLLASGSNDKTVTIWDMR 209
               LLASG  D TV +WD++
Sbjct: 634 PDGRLLASGGRDWTVRLWDVQ 654

Source: Roseiflexus sp. RS-1

Species: Roseiflexus sp. RS-1

Genus: Roseiflexus

Family: Chloroflexaceae

Order: Chloroflexales

Class: Chloroflexi

Phylum: Chloroflexi

Superkingdom: Bacteria

>gi|281410781|gb|ADA68804.1| HET-E [Podospora anserina]

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 99/204 (48%), Gaps = 30/204 (14%)

Query: 27  GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPL 86
           G  ++ V FSPD++ +A+G DD+T+ +W  D  S        GH  GR++    V   P 
Sbjct: 89  GGRVQSVAFSPDSQRVASGSDDKTIKIW--DAASGTCTQTLEGHG-GRVQ---SVAFSPD 142

Query: 87  CRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWD 146
            + RV S      I       G  ++T+  H S+V SV F+     + SGS DKT+K+WD
Sbjct: 143 GQ-RVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWD 201

Query: 147 VPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATL------------- 193
             S TC +TLE H   V    FS D   +ASGS DKT+ IWD  +               
Sbjct: 202 TASGTCTQTLEGHGNSVWSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVW 261

Query: 194 ----------LASGSNDKTVTIWD 207
                     +ASGS+DKT+ IWD
Sbjct: 262 SVAFSPDGQRVASGSDDKTIKIWD 285

Source: Podospora anserina

Species: Podospora anserina

Genus: Podospora

Family: Lasiosphaeriaceae

Order: Sordariales

Class: Sordariomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|347836621|emb|CCD51193.1| hypothetical protein [Botryotinia fuckeliana]

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 67/187 (35%), Positives = 90/187 (48%), Gaps = 12/187 (6%)

Query: 25  HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPAC 84
           H GS +  + FS D+RLLA+G  D T+ +W  D  +  ++    GH       W R  A 
Sbjct: 796 HSGS-VNSIAFSADSRLLASGSGDHTIKIW--DATTGTLQQTLEGHND-----WVRSIAF 847

Query: 85  PLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKL 144
                 + S      I       G   +T+  H+ ++ SV F+  S LL SGS + T+K+
Sbjct: 848 SADSKLLASGSRDHTIKIWDATTGTLHQTLEGHSGSINSVAFSADSKLLASGSGNHTIKI 907

Query: 145 WDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD----MLATLLASGSND 200
           WD  + T  +TLE H  +V    FS D  LLASGS D T+ IWD     L   L   S D
Sbjct: 908 WDAATGTLQQTLEGHNDWVRSIAFSADSKLLASGSRDHTIKIWDAATGTLHQTLEGHSGD 967

Query: 201 KTVTIWD 207
            TV IWD
Sbjct: 968 HTVKIWD 974

Source: Botryotinia fuckeliana

Species: Botryotinia fuckeliana

Genus: Botryotinia

Family: Sclerotiniaceae

Order: Helotiales

Class: Leotiomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|281410773|gb|ADA68800.1| HET-E [Podospora anserina]

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 97/204 (47%), Gaps = 30/204 (14%)

Query: 27  GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPL 86
           G  ++ V FSPD + +A+G DD T+ +W  D  S        GH  GR++    V   P 
Sbjct: 89  GGRVQSVAFSPDGQRVASGSDDHTIKIW--DAASGTCTQTLEGHG-GRVQ---SVAFSPD 142

Query: 87  CRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWD 146
            + RV S      I       G  ++T+  H S+V SV F+     + SGS DKT+K+WD
Sbjct: 143 GQ-RVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWD 201

Query: 147 VPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATL------------- 193
             S TC +TLE H   V    FS D   +ASGS DKT+ IWD  +               
Sbjct: 202 TASGTCTQTLEGHGNSVWSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVW 261

Query: 194 ----------LASGSNDKTVTIWD 207
                     +ASGS+DKT+ IWD
Sbjct: 262 SVAFSPDGQRVASGSDDKTIKIWD 285

Source: Podospora anserina

Species: Podospora anserina

Genus: Podospora

Family: Lasiosphaeriaceae

Order: Sordariales

Class: Sordariomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|281410771|gb|ADA68799.1| HET-E [Podospora anserina]

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 98/204 (48%), Gaps = 30/204 (14%)

Query: 27  GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPL 86
           G ++  V FSPD + +A+G DD+T+ +W  D  S        GH  GR++    V   P 
Sbjct: 47  GGSVWSVAFSPDGQRVASGSDDKTIKIW--DAASGTCTQTLEGHG-GRVQ---SVAFSPD 100

Query: 87  CRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWD 146
            + RV S      I       G  ++T+  H S+V SV F+     + SGS DKT+K+WD
Sbjct: 101 GQ-RVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWD 159

Query: 147 VPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATL------------- 193
             S TC +TLE H   V    FS D   +ASGS DKT+ IWD  +               
Sbjct: 160 TASGTCTQTLEGHGNSVWSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVW 219

Query: 194 ----------LASGSNDKTVTIWD 207
                     +ASGS+DKT+ IWD
Sbjct: 220 SVAFSPDGQRVASGSDDKTIKIWD 243

Source: Podospora anserina

Species: Podospora anserina

Genus: Podospora

Family: Lasiosphaeriaceae

Order: Sordariales

Class: Sordariomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|281410783|gb|ADA68805.1| HET-E [Podospora anserina]

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 98/204 (48%), Gaps = 30/204 (14%)

Query: 27  GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPL 86
           G ++  V FSPD + +A+G DD+T+ +W  D  S        GH  GR++    V   P 
Sbjct: 47  GGSVWSVAFSPDGQRVASGSDDKTIKIW--DAASGTCTQTLEGHG-GRVQ---SVAFSPD 100

Query: 87  CRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWD 146
            + RV S      I       G  ++T+  H S+V SV F+     + SGS DKT+K+WD
Sbjct: 101 GQ-RVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWD 159

Query: 147 VPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATL------------- 193
             S TC +TLE H   V    FS D   +ASGS DKT+ IWD  +               
Sbjct: 160 TASGTCTQTLEGHGNSVWSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVW 219

Query: 194 ----------LASGSNDKTVTIWD 207
                     +ASGS+DKT+ IWD
Sbjct: 220 SVAFSPDGQRVASGSDDKTIKIWD 243

Source: Podospora anserina

Species: Podospora anserina

Genus: Podospora

Family: Lasiosphaeriaceae

Order: Sordariales

Class: Sordariomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|307152491|ref|YP_003887875.1| WD40 repeat-containing protein [Cyanothece sp. PCC 7822] gi|306982719|gb|ADN14600.1| WD40 repeat, subgroup [Cyanothece sp. PCC 7822]

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 110/243 (45%), Gaps = 42/243 (17%)

Query: 7    GDGPSLFNGT--ELILRGSVHIGSNMRC----------VRFSPDTRLLATGGDDETVTVW 54
            GDG  L +G+  + I    V  G  +R           V FS D ++LA+G  D+T+ +W
Sbjct: 820  GDGKILASGSRDKTIKLWDVQTGQEIRTLSGHNDSVLSVSFSGDGKILASGSWDKTIKLW 879

Query: 55   RSDDLSLIMETNDRGHTQGRIE-GWGRVPACPLCRTRVFSTFVKQIIPTRVGVY----GQ 109
                  LI   +  GH  G     +  +P  P+ +             T + ++    GQ
Sbjct: 880  DVQTGQLIRTLS--GHNDGVSSVSFSPIPPSPVTKGGAGGILASGSRDTSIKLWDVQTGQ 937

Query: 110  DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS 169
               T+  H   V+SV F+    +L SGS DKT+KLWDV +   I+TL  H   V   +FS
Sbjct: 938  LIRTLSGHNDGVSSVSFSPDGKILASGSGDKTIKLWDVQTGQLIRTLSGHNDVVWSVSFS 997

Query: 170  CDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIW 206
             D  +LASGS DKT+ +WD+                          +LASGS DKT+ +W
Sbjct: 998  PDGKILASGSGDKTIKLWDVQTGQQIRTLSRHNDSVWSVSFSPDGKILASGSGDKTIKLW 1057

Query: 207  DMR 209
            D++
Sbjct: 1058 DVQ 1060

Source: Cyanothece sp. PCC 7822

Species: Cyanothece sp. PCC 7822

Genus: Cyanothece

Order: Chroococcales

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|281410777|gb|ADA68802.1| HET-E [Podospora anserina]

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 97/204 (47%), Gaps = 30/204 (14%)

Query: 27  GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPL 86
           G  +  V FSPD + +A+G DD+T+ +W  D  S        GH  GR++    V   P 
Sbjct: 47  GGTVWSVAFSPDGQRVASGSDDKTIKIW--DAASGTCTQTLEGHG-GRVQ---SVAFSPD 100

Query: 87  CRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWD 146
            + RV S      I       G  ++T+  H S+V SV F+     + SGS DKT+K+WD
Sbjct: 101 GQ-RVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWD 159

Query: 147 VPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATL------------- 193
             S TC +TLE H   V    FS D   +ASGS DKT+ IWD  +               
Sbjct: 160 TASGTCTQTLEGHGNSVWSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVW 219

Query: 194 ----------LASGSNDKTVTIWD 207
                     +ASGS+DKT+ IWD
Sbjct: 220 SVAFSPDGQRVASGSDDKTIKIWD 243

Source: Podospora anserina

Species: Podospora anserina

Genus: Podospora

Family: Lasiosphaeriaceae

Order: Sordariales

Class: Sordariomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|281410785|gb|ADA68806.1| HET-E [Podospora anserina]

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 98/204 (48%), Gaps = 30/204 (14%)

Query: 27  GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPL 86
           G ++  V FSPD + +A+G DD+T+ +W  D  S        GH  GR++    V   P 
Sbjct: 47  GGSVWSVAFSPDGQRVASGSDDKTIRIW--DAASGTCTQTLEGHG-GRVQ---SVAFSPD 100

Query: 87  CRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWD 146
            + RV S      I       G  ++T+  H S+V SV F+     + SGS DKT+K+WD
Sbjct: 101 GQ-RVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWD 159

Query: 147 VPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATL------------- 193
             S TC +TLE H   V    FS D   +ASGS DKT+ IWD  +               
Sbjct: 160 TASGTCTQTLEGHGNSVWSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVW 219

Query: 194 ----------LASGSNDKTVTIWD 207
                     +ASGS+DKT+ IWD
Sbjct: 220 SVAFSPDGQRVASGSDDKTIKIWD 243

Source: Podospora anserina

Species: Podospora anserina

Genus: Podospora

Family: Lasiosphaeriaceae

Order: Sordariales

Class: Sordariomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
ASPGD|ASPL0000006214	434	AN6385 [Emericella nidulans (t	0.693	0.354	0.325	4.7e-14
UNIPROTKB|F1NUJ8	320	POC1A "Uncharacterized protein	0.707	0.490	0.303	1.4e-13
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.382	0.275	0.453	1.2e-19
UNIPROTKB|Q2KIG2	334	WDR5 "WD repeat-containing pro	0.382	0.254	0.453	2.6e-19
UNIPROTKB|P61964	334	WDR5 "WD repeat-containing pro	0.382	0.254	0.453	2.6e-19
UNIPROTKB|F1S034	334	WDR5 "Uncharacterized protein"	0.382	0.254	0.453	2.6e-19
MGI|MGI:2155884	334	Wdr5 "WD repeat domain 5" [Mus	0.382	0.254	0.453	2.6e-19
RGD|1305159	334	Wdr5 "WD repeat domain 5" [Rat	0.382	0.254	0.453	2.6e-19
UNIPROTKB|Q5M786	334	wdr5 "WD repeat-containing pro	0.382	0.254	0.453	2.6e-19
ZFIN|ZDB-GENE-040426-1954	694	katnb1 "katanin p80 (WD repeat	0.626	0.200	0.360	2.9e-19

ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)]

 Score = 188 (71.2 bits), Expect = 4.7e-14, P = 4.7e-14
 Identities = 53/163 (32%), Positives = 77/163 (47%)

Query:    33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF 92
             V FSPD +LLA+G  ++T+ +W S    L        HT G    W  +P       R+ 
Sbjct:   161 VAFSPDGQLLASGSAEKTIKLWDSATCGL-------KHTLGGHSNWV-LPLVFSPDGRLL 212

Query:    93 STFVKQI-IPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
             ++      I       G    T+  H++ + S+ F+    LL SGS D T+KLWD  + +
Sbjct:   213 ASGSNDATIKLWDPPSGSLKHTLEGHSNKIESLAFSPNGQLLASGSSDATIKLWDTATGS 272

Query:   152 CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLL 194
                TL+ H+  V    FS D  LL SGS D T+ +WD    +L
Sbjct:   273 FRHTLKGHSDMVLSVVFSPDSQLLESGSGDNTIKLWDPATGIL 315

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1NUJ8 POC1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 180 (68.4 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 50/165 (30%), Positives = 76/165 (46%)

Query:    23 SVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVP 82
             S HI   +RC RFSPD RL+A+  DD+TV +W       I    + G     +E     P
Sbjct:   143 SQHINW-VRCARFSPDGRLIASASDDKTVKLWDKTSRECIHSFCEHGGFANHVEFH---P 198

Query:    83 ACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTV 142
             +   C     +    ++   R+    Q  +    HT+AV S+ F+   + L++ S D T+
Sbjct:   199 S-GTCIAAAGTDKTVKVWDVRMNRLLQHYQV---HTAAVNSLSFHPSGNYLITASNDSTL 254

Query:   143 KLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW 187
             K+ D+     + TL  H    TC  FS      ASG +D+ V +W
Sbjct:   255 KILDLLEGRLLYTLHGHQGPATCVAFSRTGDFFASGGSDEQVMVW 299

GO:0005814 "centriole" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 209 (78.6 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 39/86 (45%), Positives = 58/86 (67%)

Query:   105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
             G Y G+  +T+  H   ++ V ++  S+LLVS S DKT+K+WDV S  C+KTL+ H+ YV
Sbjct:    47 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 106

Query:   164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
              CC F+   +L+ SGS D++V IWD+
Sbjct:   107 FCCNFNPQSNLIVSGSFDESVRIWDV 132

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 209 (78.6 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
 Identities = 39/86 (45%), Positives = 58/86 (67%)

Query:   105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
             G Y G+  +T+  H   ++ V ++  S+LLVS S DKT+K+WDV S  C+KTL+ H+ YV
Sbjct:    73 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132

Query:   164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
              CC F+   +L+ SGS D++V IWD+
Sbjct:   133 FCCNFNPQSNLIVSGSFDESVRIWDV 158

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|P61964 WDR5 "WD repeat-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 209 (78.6 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
 Identities = 39/86 (45%), Positives = 58/86 (67%)

Query:   105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
             G Y G+  +T+  H   ++ V ++  S+LLVS S DKT+K+WDV S  C+KTL+ H+ YV
Sbjct:    73 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132

Query:   164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
              CC F+   +L+ SGS D++V IWD+
Sbjct:   133 FCCNFNPQSNLIVSGSFDESVRIWDV 158

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IDA

GO:0071339 "MLL1 complex" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

GO:0043984 "histone H4-K16 acetylation" evidence=IDA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IDA

GO:0000123 "histone acetyltransferase complex" evidence=IDA

GO:0043981 "histone H4-K5 acetylation" evidence=IDA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IDA

GO:0043982 "histone H4-K8 acetylation" evidence=IDA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0043966 "histone H3 acetylation" evidence=IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IDA

UNIPROTKB|F1S034 WDR5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 209 (78.6 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
 Identities = 39/86 (45%), Positives = 58/86 (67%)

Query:   105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
             G Y G+  +T+  H   ++ V ++  S+LLVS S DKT+K+WDV S  C+KTL+ H+ YV
Sbjct:    73 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132

Query:   164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
              CC F+   +L+ SGS D++V IWD+
Sbjct:   133 FCCNFNPQSNLIVSGSFDESVRIWDV 158

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

MGI|MGI:2155884 Wdr5 "WD repeat domain 5" [Mus musculus (taxid:10090)]

 Score = 209 (78.6 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
 Identities = 39/86 (45%), Positives = 58/86 (67%)

Query:   105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
             G Y G+  +T+  H   ++ V ++  S+LLVS S DKT+K+WDV S  C+KTL+ H+ YV
Sbjct:    73 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132

Query:   164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
              CC F+   +L+ SGS D++V IWD+
Sbjct:   133 FCCNFNPQSNLIVSGSFDESVRIWDV 158

GO:0000123 "histone acetyltransferase complex" evidence=ISO

GO:0001501 "skeletal system development" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0035097 "histone methyltransferase complex" evidence=ISO

GO:0043966 "histone H3 acetylation" evidence=ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO

GO:0043982 "histone H4-K8 acetylation" evidence=ISO

GO:0043984 "histone H4-K16 acetylation" evidence=ISO

GO:0048188 "Set1C/COMPASS complex" evidence=ISO

GO:0051568 "histone H3-K4 methylation" evidence=ISO

GO:0071339 "MLL1 complex" evidence=ISO

RGD|1305159 Wdr5 "WD repeat domain 5" [Rattus norvegicus (taxid:10116)]

 Score = 209 (78.6 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
 Identities = 39/86 (45%), Positives = 58/86 (67%)

Query:   105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
             G Y G+  +T+  H   ++ V ++  S+LLVS S DKT+K+WDV S  C+KTL+ H+ YV
Sbjct:    73 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132

Query:   164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
              CC F+   +L+ SGS D++V IWD+
Sbjct:   133 FCCNFNPQSNLIVSGSFDESVRIWDV 158

GO:0000123 "histone acetyltransferase complex" evidence=ISO;ISS

GO:0001501 "skeletal system development" evidence=IEA;ISO

GO:0005622 "intracellular" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISO;ISS

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA;ISO

GO:0043966 "histone H3 acetylation" evidence=IEA;ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO;ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISO;ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISO;ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISO;ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISO;ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISO;ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISO;ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISO;ISS

GO:0071339 "MLL1 complex" evidence=ISO;ISS

UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 209 (78.6 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
 Identities = 39/86 (45%), Positives = 58/86 (67%)

Query:   105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
             G Y G+  +T+  H   ++ V ++  S+LLVS S DKT+K+WDV S  C+KTL+ H+ YV
Sbjct:    73 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132

Query:   164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
              CC F+   +L+ SGS D++V IWD+
Sbjct:   133 FCCNFNPQSNLIVSGSFDESVRIWDV 158

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

ZFIN|ZDB-GENE-040426-1954 katnb1 "katanin p80 (WD repeat containing) subunit B 1" [Danio rerio (taxid:7955)]

 Score = 204 (76.9 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
 Identities = 57/158 (36%), Positives = 81/158 (51%)

Query:    40 RLLATGGDDETVTVWRSDDLSLIMETNDRGHTQ--GRIE---GWGRVPACPLCRT-RVFS 93
             RLLATGG+D  V +W     + IM     GHT   G I+      RV A  L  + R++ 
Sbjct:    34 RLLATGGEDCRVNIWAVSKPNCIMSLT--GHTSAVGCIQFNSSEERVVAGSLSGSLRLWD 91

Query:    94 TFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCI 153
                 +I+ T +G           H ++++S+ F+     L SGSVD  +KLWDV    C+
Sbjct:    92 LEAAKILRTLMG-----------HKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCV 140

Query:   154 KTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA 191
                + HT+ V C  FS D   LAS S+D TV +WD++A
Sbjct:   141 FRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIA 178

GO:0008017 "microtubule binding" evidence=IEA

GO:0008352 "katanin complex" evidence=IEA

GO:0051013 "microtubule severing" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	222
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-34
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-24
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-21
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-10
smart00320	40	smart00320, WD40, WD40 repeats	3e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-09
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-07
smart00320	40	smart00320, WD40, WD40 repeats	1e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-06
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	1e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-04
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	0.001
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	0.002
smart00320	40	smart00320, WD40, WD40 repeats	0.003
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  123 bits (310), Expect = 3e-34
 Identities = 70/207 (33%), Positives = 97/207 (46%), Gaps = 40/207 (19%)

Query: 31  RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTR 90
            CV FSPD +LLATG  D T+ VW  +   L      +GHT         V A     T 
Sbjct: 13  TCVAFSPDGKLLATGSGDGTIKVWDLETGEL--LRTLKGHTGP----VRDVAASA-DGTY 65

Query: 91  VFST-FVKQIIPTRVGVY----GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLW 145
           + S    K I      ++    G+   T+  HTS V+SV F+    +L S S DKT+K+W
Sbjct: 66  LASGSSDKTIR-----LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 146 DVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM-----LATL------- 193
           DV +  C+ TL  HT +V    FS D + +AS S D T+ +WD+     +ATL       
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV 180

Query: 194 -----------LASGSNDKTVTIWDMR 209
                      L S S+D T+ +WD+ 
Sbjct: 181 NSVAFSPDGEKLLSSSSDGTIKLWDLS 207

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 97.8 bits (244), Expect = 1e-24
 Identities = 55/205 (26%), Positives = 77/205 (37%), Gaps = 72/205 (35%)

Query: 28  SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLC 87
           S +  V FSPD R+L++   D+T+ VW  +    +     RGH                 
Sbjct: 94  SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL--RGH----------------- 134

Query: 88  RTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV 147
                                         T  V SV F+   + + S S D T+KLWD+
Sbjct: 135 ------------------------------TDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164

Query: 148 PSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLAT--------------- 192
            +  C+ TL  HT  V    FS D   L S S+D T+ +WD+                  
Sbjct: 165 RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS 224

Query: 193 --------LLASGSNDKTVTIWDMR 209
                   LLASGS D T+ +WD+R
Sbjct: 225 VAFSPDGYLLASGSEDGTIRVWDLR 249

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 88.2 bits (219), Expect = 5e-21
 Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 23/116 (19%)

Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
           HT  VT V F+    LL +GS D T+K+WD+ +   ++TL+ HT  V     S D + LA
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67

Query: 177 SGSNDKTVTIWDM-----------------------LATLLASGSNDKTVTIWDMR 209
           SGS+DKT+ +WD+                          +L+S S DKT+ +WD+ 
Sbjct: 68  SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 87.4 bits (217), Expect = 9e-21
 Identities = 51/165 (30%), Positives = 74/165 (44%), Gaps = 21/165 (12%)

Query: 31  RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTR 90
             V FSPD   +A+   D T+ +W       +      GHT       G V +       
Sbjct: 139 NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV--ATLTGHT-------GEVNSVAFSPDG 189

Query: 91  ---VFSTFVKQIIPTRVGVY----GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVK 143
              + S+    I      ++    G+   T+  H + V SV F+    LL SGS D T++
Sbjct: 190 EKLLSSSSDGTIK-----LWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIR 244

Query: 144 LWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
           +WD+ +  C++TL  HT  VT   +S D   LASGS D T+ IWD
Sbjct: 245 VWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 80.9 bits (198), Expect = 8e-18
 Identities = 61/208 (29%), Positives = 98/208 (47%), Gaps = 26/208 (12%)

Query: 31  RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTR 90
             + FSPD  LL +G  D T+ +W  D+   ++++ +  H     +     P        
Sbjct: 69  TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLA 128

Query: 91  VFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS-VDKTVKLWDVPS 149
             S+    +    +   G+   T+  H+ +VTS+ F+    LL SGS +D T+KLWD+ +
Sbjct: 129 S-SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187

Query: 150 LTCIKTLESHTRYVTCCTFSCDDS-LLASGSNDKTVTIWDMLA----------------- 191
              + TL  HT  V+   FS D   L+ASGS+D T+ +WD+                   
Sbjct: 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS 247

Query: 192 ------TLLASGSNDKTVTIWDMRGNLS 213
                 +LLASGS+D T+ +WD+R + S
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSS 275

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 75.1 bits (183), Expect = 8e-16
 Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 5/187 (2%)

Query: 28  SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLC 87
           S++  V FSPD +LLA+G  D TV +W  +   L+     +GH     EG     +    
Sbjct: 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH-----EGPVSSLSFSPD 339

Query: 88  RTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV 147
            + + S            +            S V SV F+    ++ SGS D TV+LWD+
Sbjct: 340 GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDL 399

Query: 148 PSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWD 207
            + + ++ L+ HT  VT   FS D   LASGS+D T+ +WD+  +L +   +     +  
Sbjct: 400 STGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLAS 459

Query: 208 MRGNLSV 214
              +LSV
Sbjct: 460 KSSDLSV 466

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 68.6 bits (166), Expect = 2e-13
 Identities = 59/203 (29%), Positives = 89/203 (43%), Gaps = 32/203 (15%)

Query: 31  RCVRFSPD-TRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT 89
             + FSPD   L+A+G  D T+ +W      L+  T   GH+   +  +      P    
Sbjct: 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL-SGHSDSVVSSF-----SPDGSL 255

Query: 90  RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS 149
               +    I    +        T+  H+S+V SV F+    LL SGS D TV+LWD+ +
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315

Query: 150 LTCI--KTLESHTRYVTCCTFSCDDSLLASG-SNDKTVTIWDMLA--------------- 191
              +   TL+ H   V+  +FS D SLL SG S+D T+ +WD+                 
Sbjct: 316 GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLS 375

Query: 192 -------TLLASGSNDKTVTIWD 207
                   +++SGS D TV +WD
Sbjct: 376 VSFSPDGRVVSSGSTDGTVRLWD 398

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 59.3 bits (142), Expect = 2e-10
 Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 27/126 (21%)

Query: 117 HTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIK-TLESHTRYVTCCTFSCDDSL 174
           HT  V+S+ F+     L+ SGS D T++LWD+ +   ++ TL  H+  V    FS D SL
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSL 255

Query: 175 LASGSNDKTVTIWDMLAT------------------------LLASGSNDKTVTIWDMRG 210
           LASGS+D T+ +WD+ ++                        LLASGS+D TV +WD+  
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315

Query: 211 NLSVDV 216
              +  
Sbjct: 316 GKLLSS 321

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 50.4 bits (121), Expect = 3e-09
 Identities = 20/40 (50%), Positives = 25/40 (62%)

Query: 149 SLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
           S   +KTL+ HT  VT   FS D   LASGS+D T+ +WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 23/83 (27%)

Query: 152 CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM-----LATL------------- 193
             +TL+ HT  VTC  FS D  LLA+GS D T+ +WD+     L TL             
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 194 -----LASGSNDKTVTIWDMRGN 211
                LASGS+DKT+ +WD+   
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETG 83

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 49.7 bits (119), Expect = 7e-09
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 151 TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
             ++TL+ HT  VT   FS D +LLASGS+D TV +WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 117 HTSAVTSVRFNHKSS--LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSL 174
           HT  V  V F H S+  +L S   D  V +WDV     ++ ++ H+  +T   ++ D SL
Sbjct: 124 HTKKVGIVSF-HPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL 182

Query: 175 LASGSNDKTVTIWD-----MLATLLASGSNDKTVTIWDMRGNLSVDVPLN 219
           L + S DK + I D     +++++ A  S      +W  R +L + +  +
Sbjct: 183 LCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCS 232

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 44.3 bits (105), Expect = 7e-07
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWD 146
           HT  VTSV F+   +LL SGS D TV++WD
Sbjct: 10  HTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 113 TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWD 146
           T+  HT  VTSV F+     L SGS D T+KLWD
Sbjct: 7   TLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.2 bits (108), Expect = 5e-06
 Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 102 TRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV-PSLTCIKTLES-H 159
           + V +    S  +  H  ++TS+ F+    LL+SGS D T+KLWD+      IK+LE  H
Sbjct: 49  SLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLH 108

Query: 160 TRYVTCCTFSCDDS---LLASGSNDKTVTIWD 188
              V+    S  D    LLAS S D TV +WD
Sbjct: 109 DSSVSKLALSSPDGNSILLASSSLDGTVKLWD 140

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 47/177 (26%), Positives = 66/177 (37%), Gaps = 51/177 (28%)

Query: 36  SPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHT--------QGRIEGWG-------- 79
           S D  LLA+G DD +V +W  +    I     + +          GR   +G        
Sbjct: 585 SADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYY 644

Query: 80  ---RVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSG 136
              R P  PLC              T +G           H+  V+ VRF   SS LVS 
Sbjct: 645 YDLRNPKLPLC--------------TMIG-----------HSKTVSYVRFV-DSSTLVSS 678

Query: 137 SVDKTVKLWDVP------SLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW 187
           S D T+KLWD+       + T + +   HT        S  D  +A+GS    V ++
Sbjct: 679 STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVY 735

Length = 793

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 52/224 (23%), Positives = 94/224 (41%), Gaps = 36/224 (16%)

Query: 21  RGSVHIGSNMRC-VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWG 79
           +G +   SN+ C + F  D    AT G ++ + ++  +  S+I +  D  +    +E   
Sbjct: 476 QGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECE--SIIKDGRDIHYPV--VELAS 531

Query: 80  RVPACPLC-----RTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKS-SLL 133
           R     +C     +++V S+  + ++        Q    +  H   V S+ ++    +LL
Sbjct: 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLL 591

Query: 134 VSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSL-LASGSNDKTVTIWDM--- 189
            SGS D +VKLW +     I T+++    + C  F  +    LA GS D  V  +D+   
Sbjct: 592 ASGSDDGSVKLWSINQGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADHKVYYYDLRNP 650

Query: 190 ---LATL-----------------LASGSNDKTVTIWDMRGNLS 213
              L T+                 L S S D T+ +WD+  ++S
Sbjct: 651 KLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSIS 694

Length = 793

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 13/109 (11%)

Query: 117 HTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVP----SLTCIK----TLESHTRYVTCCT 167
           HTS++  ++FN   S +L SGS D T+++W++P    S+  IK     L+ H + ++   
Sbjct: 73  HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132

Query: 168 FS-CDDSLLASGSNDKTVTIWDMLATLLASGSN--DKTVTI-WDMRGNL 212
           ++  +  ++ S   D  V IWD+     A   N   K  ++ W+++GNL
Sbjct: 133 WNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNL 181

Length = 568

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 15/24 (62%), Positives = 16/24 (66%)

Query: 31 RCVRFSPDTRLLATGGDDETVTVW 54
            V FSPD  LLA+G DD TV VW
Sbjct: 15 TSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 24/183 (13%)

Query: 33  VRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDR-GHTQGRIEGWGRVPACPLCRTR 90
           V F+P D + L T  +D T+  W   +  L    +D   H QG  +  G V   P     
Sbjct: 81  VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNV 140

Query: 91  VFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL 150
           + S     ++       G+  E +  H+  +TS+ +N   SLL + S DK + + D    
Sbjct: 141 LASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG 200

Query: 151 TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW----DMLATLLASGSNDKTVTIW 206
           T + ++E+H                AS  + + +  W    D++ TL  S S  + + +W
Sbjct: 201 TIVSSVEAH----------------ASAKSQRCL--WAKRKDLIITLGCSKSQQRQIMLW 242

Query: 207 DMR 209
           D R
Sbjct: 243 DTR 245

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 34.2 bits (79), Expect = 0.003
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 31 RCVRFSPDTRLLATGGDDETVTVW 54
            V FSPD + LA+G DD T+ +W
Sbjct: 16 TSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 37.8 bits (87), Expect = 0.003
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 35/140 (25%)

Query: 118 TSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT--------CIKTLESHTRYVTCCTFS 169
           ++ V ++ F+       +  V+K +K+++  S+          +  L S ++    C  S
Sbjct: 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNS 542

Query: 170 CDDSLLASGSNDKTVTIWDML------------------------ATLLASGSNDKTVTI 205
              S +AS + +  V +WD+                          TLLASGS+D +V +
Sbjct: 543 YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKL 602

Query: 206 WDMRGNLS---VDVPLNYCC 222
           W +   +S   +    N CC
Sbjct: 603 WSINQGVSIGTIKTKANICC 622

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
KOG0263|consensus	707		99.97
KOG0271|consensus	480		99.96
KOG0272|consensus	459		99.95
KOG0279|consensus	315		99.95
KOG0272|consensus	459		99.93
KOG0286|consensus	343		99.93
KOG0266|consensus	456		99.92
KOG0271|consensus	480		99.92
KOG0291|consensus	893		99.92
KOG0281|consensus	499		99.92
KOG0266|consensus	456		99.91
KOG0284|consensus	464		99.91
PTZ00421	493	coronin; Provisional	99.91
KOG0316|consensus	307		99.9
KOG0279|consensus	315		99.9
KOG0285|consensus	460		99.9
KOG0275|consensus	508		99.9
KOG0273|consensus	524		99.89
KOG0265|consensus	338		99.89
KOG0292|consensus	1202		99.89
KOG0315|consensus	311		99.88
KOG0283|consensus	712		99.88
KOG0295|consensus	406		99.88
PTZ00420	568	coronin; Provisional	99.88
KOG0286|consensus	343		99.87
KOG0319|consensus	775		99.87
KOG0263|consensus	707		99.87
KOG0645|consensus	312		99.87
KOG0319|consensus	775		99.87
PTZ00421	493	coronin; Provisional	99.87
KOG0318|consensus	603		99.86
KOG0645|consensus	312		99.86
KOG0291|consensus	893		99.86
KOG0295|consensus	406		99.86
KOG0274|consensus	537		99.86
KOG0647|consensus	347		99.85
KOG0284|consensus	464		99.85
KOG0315|consensus	311		99.85
KOG0265|consensus	338		99.85
PLN00181	793	protein SPA1-RELATED; Provisional	99.85
PTZ00420	568	coronin; Provisional	99.85
KOG1446|consensus	311		99.85
PLN00181	793	protein SPA1-RELATED; Provisional	99.84
KOG0282|consensus	503		99.84
KOG0641|consensus	350		99.84
KOG0296|consensus	399		99.84
KOG0318|consensus	603		99.84
KOG0275|consensus	508		99.84
KOG0276|consensus	794		99.84
KOG0276|consensus	794		99.83
KOG0282|consensus	503		99.83
KOG0273|consensus	524		99.83
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.83
KOG0772|consensus	641		99.83
KOG0300|consensus	481		99.83
KOG0296|consensus	399		99.83
KOG0305|consensus	484		99.83
KOG0643|consensus	327		99.83
KOG0277|consensus	311		99.82
KOG0973|consensus	942		99.82
KOG2096|consensus	420		99.82
KOG0292|consensus	1202		99.82
KOG0313|consensus	423		99.82
KOG0293|consensus	519		99.82
KOG0294|consensus	362		99.81
KOG0285|consensus	460		99.81
KOG0281|consensus	499		99.81
KOG0640|consensus	430		99.81
KOG0264|consensus	422		99.81
KOG0264|consensus	422		99.81
KOG0277|consensus	311		99.81
KOG0640|consensus	430		99.81
KOG0302|consensus	440		99.8
KOG0283|consensus	712		99.8
KOG0306|consensus	888		99.8
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.79
KOG0289|consensus	506		99.79
KOG0267|consensus	825		99.78
KOG0300|consensus	481		99.78
KOG1036|consensus	323		99.78
KOG0310|consensus	487		99.78
KOG0278|consensus	334		99.78
KOG1445|consensus	1012		99.78
KOG1407|consensus	313		99.78
KOG0269|consensus	839		99.78
KOG0313|consensus	423		99.77
KOG0308|consensus	735		99.77
KOG0289|consensus	506		99.76
KOG0646|consensus	476		99.75
KOG0274|consensus	537		99.74
KOG0306|consensus	888		99.74
KOG0308|consensus	735		99.74
KOG0299|consensus	479		99.74
KOG0293|consensus	519		99.73
KOG0301|consensus	745		99.73
KOG0302|consensus	440		99.73
KOG0772|consensus	641		99.72
KOG1407|consensus	313		99.72
KOG0643|consensus	327		99.72
KOG4283|consensus	397		99.71
KOG0973|consensus	942		99.71
KOG0301|consensus	745		99.71
KOG0310|consensus	487		99.71
KOG0303|consensus	472		99.7
KOG1332|consensus	299		99.7
KOG1332|consensus	299		99.7
KOG0288|consensus	459		99.69
KOG0278|consensus	334		99.68
KOG0641|consensus	350		99.68
KOG0268|consensus	433		99.67
KOG0299|consensus	479		99.67
KOG0269|consensus	839		99.66
KOG1446|consensus	311		99.65
KOG1274|consensus	933		99.64
KOG0270|consensus	463		99.64
KOG0288|consensus	459		99.64
KOG1036|consensus	323		99.64
KOG0267|consensus	825		99.63
KOG0650|consensus	733		99.63
KOG1273|consensus	405		99.63
KOG0647|consensus	347		99.62
KOG4328|consensus	498		99.62
KOG0316|consensus	307		99.61
KOG2394|consensus	636		99.61
KOG0270|consensus	463		99.61
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.61
KOG2445|consensus	361		99.61
KOG2048|consensus	691		99.6
KOG0646|consensus	476		99.58
KOG1539|consensus	910		99.58
KOG1034|consensus	385		99.58
KOG1273|consensus	405		99.57
KOG0305|consensus	484		99.57
KOG1007|consensus	370		99.57
KOG0639|consensus	705		99.56
KOG1063|consensus	764		99.53
KOG1274|consensus	933		99.52
KOG0294|consensus	362		99.52
KOG0321|consensus	720		99.52
KOG2055|consensus	514		99.51
KOG4283|consensus	397		99.51
KOG1009|consensus	434		99.5
KOG1188|consensus	376		99.5
KOG1034|consensus	385		99.49
KOG1408|consensus	1080		99.49
KOG0649|consensus	325		99.49
KOG1445|consensus	1012		99.49
KOG1310|consensus	758		99.48
KOG0268|consensus	433		99.47
KOG2055|consensus	514		99.47
KOG1009|consensus	434		99.47
KOG1063|consensus	764		99.47
KOG0321|consensus	720		99.46
KOG0642|consensus	577		99.45
KOG2919|consensus	406		99.44
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.44
KOG2110|consensus	391		99.43
KOG2106|consensus	626		99.43
KOG0303|consensus	472		99.42
KOG0307|consensus	1049		99.41
KOG4227|consensus	609		99.41
KOG0639|consensus	705		99.4
KOG2919|consensus	406		99.4
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.4
KOG0644|consensus	1113		99.38
KOG4328|consensus	498		99.38
KOG0322|consensus	323		99.38
KOG2111|consensus	346		99.38
KOG0771|consensus	398		99.38
KOG0649|consensus	325		99.36
KOG0642|consensus	577		99.36
KOG2096|consensus	420		99.36
KOG1539|consensus	910		99.34
KOG2048|consensus	691		99.34
KOG0771|consensus	398		99.33
KOG4378|consensus	673		99.32
KOG0974|consensus	967		99.32
KOG2106|consensus	626		99.31
KOG1188|consensus	376		99.3
KOG1310|consensus	758		99.29
COG2319	466	FOG: WD40 repeat [General function prediction only	99.29
COG2319	466	FOG: WD40 repeat [General function prediction only	99.29
KOG4378|consensus	673		99.28
KOG1517|consensus	1387		99.27
KOG1408|consensus	1080		99.27
KOG0307|consensus	1049		99.27
KOG2394|consensus	636		99.26
KOG2445|consensus	361		99.25
KOG1524|consensus	737		99.23
KOG1538|consensus	1081		99.21
KOG1523|consensus	361		99.2
KOG0290|consensus	364		99.2
KOG1007|consensus	370		99.2
KOG1587|consensus	555		99.18
KOG1272|consensus	545		99.16
PRK01742	429	tolB translocation protein TolB; Provisional	99.16
KOG3881|consensus	412		99.15
KOG0650|consensus	733		99.13
KOG2110|consensus	391		99.11
KOG1517|consensus	1387		99.1
KOG1240|consensus	1431		99.08
KOG2321|consensus	703		99.06
KOG1064|consensus	2439		99.05
KOG1538|consensus	1081		99.03
KOG1524|consensus	737		99.02
KOG1409|consensus	404		99.02
PRK11028	330	6-phosphogluconolactonase; Provisional	99.0
PRK11028	330	6-phosphogluconolactonase; Provisional	99.0
KOG4547|consensus	541		98.98
KOG0974|consensus	967		98.97
KOG1963|consensus	792		98.96
KOG0644|consensus	1113		98.94
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.94
KOG0290|consensus	364		98.92
KOG1272|consensus	545		98.92
KOG1587|consensus	555		98.91
KOG4227|consensus	609		98.89
KOG1523|consensus	361		98.88
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.88
PRK03629	429	tolB translocation protein TolB; Provisional	98.86
KOG2139|consensus	445		98.83
KOG2139|consensus	445		98.82
PRK02889	427	tolB translocation protein TolB; Provisional	98.81
KOG1334|consensus	559		98.77
KOG3881|consensus	412		98.77
KOG0322|consensus	323		98.77
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.76
KOG3914|consensus	390		98.76
PRK04922	433	tolB translocation protein TolB; Provisional	98.75
PRK05137	435	tolB translocation protein TolB; Provisional	98.74
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.69
PRK01742	429	tolB translocation protein TolB; Provisional	98.69
KOG1963|consensus	792		98.68
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.67
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.66
KOG4714|consensus	319		98.66
KOG2315|consensus	566		98.65
KOG2111|consensus	346		98.64
KOG1354|consensus	433		98.64
KOG4547|consensus	541		98.61
KOG2321|consensus	703		98.6
KOG1409|consensus	404		98.59
KOG0280|consensus	339		98.59
KOG1240|consensus	1431		98.55
KOG2695|consensus	425		98.47
KOG0280|consensus	339		98.46
PRK00178	430	tolB translocation protein TolB; Provisional	98.44
PRK03629	429	tolB translocation protein TolB; Provisional	98.43
KOG4497|consensus	447		98.43
PRK04792	448	tolB translocation protein TolB; Provisional	98.43
KOG2041|consensus	1189		98.42
KOG1354|consensus	433		98.38
KOG1064|consensus	2439		98.38
KOG2695|consensus	425		98.37
KOG4497|consensus	447		98.36
PRK04922	433	tolB translocation protein TolB; Provisional	98.32
KOG3914|consensus	390		98.31
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.29
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.28
KOG1334|consensus	559		98.21
PRK05137	435	tolB translocation protein TolB; Provisional	98.2
PRK02889	427	tolB translocation protein TolB; Provisional	98.18
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.16
KOG0882|consensus	558		98.14
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.13
COG4946	668	Uncharacterized protein related to the periplasmic	98.12
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.1
KOG4190|consensus	1034		98.09
KOG0309|consensus	1081		98.03
PRK01029	428	tolB translocation protein TolB; Provisional	98.02
PRK01029	428	tolB translocation protein TolB; Provisional	98.01
KOG4640|consensus	665		97.99
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.97
KOG4532|consensus	344		97.96
KOG1645|consensus	463		97.95
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.95
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.88
KOG4532|consensus	344		97.88
KOG1645|consensus	463		97.87
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.87
KOG2066|consensus	846		97.84
KOG4714|consensus	319		97.77
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.77
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.76
KOG0309|consensus	1081		97.73
COG4946	668	Uncharacterized protein related to the periplasmic	97.72
PRK00178	430	tolB translocation protein TolB; Provisional	97.72
KOG4190|consensus	1034		97.71
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.68
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.67
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.64
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.63
KOG1275|consensus	1118		97.62
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.59
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.55
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.47
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.45
PRK04792	448	tolB translocation protein TolB; Provisional	97.41
KOG2314|consensus	698		97.39
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.36
KOG4640|consensus	665		97.36
KOG3621|consensus	726		97.35
PRK04043	419	tolB translocation protein TolB; Provisional	97.34
KOG1912|consensus	1062		97.29
KOG2066|consensus	846		97.22
KOG2314|consensus	698		97.2
KOG1912|consensus	1062		97.2
KOG3617|consensus	1416		97.17
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.11
KOG1920|consensus	1265		97.11
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.0
KOG2041|consensus	1189		97.0
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.99
PRK04043	419	tolB translocation protein TolB; Provisional	96.96
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.87
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.85
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.8
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.8
KOG1832|consensus	1516		96.8
KOG1008|consensus	783		96.78
KOG1832|consensus	1516		96.74
PRK02888	635	nitrous-oxide reductase; Validated	96.72
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	96.57
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.53
KOG2315|consensus	566		96.51
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.46
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.42
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.41
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	96.38
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.25
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.13
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.93
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	95.91
KOG0882|consensus	558		95.82
KOG2444|consensus	238		95.81
KOG2079|consensus	1206		95.21
KOG4649|consensus	354		95.21
KOG1008|consensus	783		95.02
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.74
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.71
KOG2444|consensus	238		94.61
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	94.43
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	94.31
KOG2114|consensus	933		94.08
KOG1920|consensus	1265		94.08
PRK02888	635	nitrous-oxide reductase; Validated	93.92
KOG2114|consensus	933		93.92
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	93.84
KOG1275|consensus	1118		93.83
KOG2395|consensus	644		93.66
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.55
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	93.38
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	92.98
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.84
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	92.76
KOG2079|consensus	1206		92.73
KOG3621|consensus	726		92.54
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	92.39
PRK13616	591	lipoprotein LpqB; Provisional	92.11
COG3391	381	Uncharacterized conserved protein [Function unknow	91.11
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	90.98
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	90.94
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.81
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	89.94
KOG3617|consensus	1416		89.91
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	89.79
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	89.7
KOG2395|consensus	644		88.66
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	88.33
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.28
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	88.27
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	88.22
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	88.08
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	87.67
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	87.66
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	87.33
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	87.19
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.11
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	87.01
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	86.12
KOG4460|consensus	741		85.6
KOG4499|consensus	310		85.49
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	85.03
KOG4649|consensus	354		84.78
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	84.23
KOG2377|consensus	657		83.67
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	83.48
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	81.71
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	80.57
KOG1900|consensus	1311		80.56
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	80.14

>KOG0263|consensus

Probab=99.97  E-value=5.4e-29  Score=211.41  Aligned_cols=183  Identities=32%  Similarity=0.526  Sum_probs=148.7

Q ss_pred             cceEEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeee
Q psy16881         15 GTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFST   94 (222)
Q Consensus        15 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (222)
                      |+.-++.+|   +++|-..+|+|+.++|+++|.|+++|+|.+.+..++..+  ++|....   |. +.+++.  ...|++
T Consensus       442 ~~~~~L~GH---~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y--~GH~~PV---wd-V~F~P~--GyYFat  510 (707)
T KOG0263|consen  442 GTSRTLYGH---SGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY--KGHLAPV---WD-VQFAPR--GYYFAT  510 (707)
T ss_pred             ceeEEeecC---CCceeeeeecccccceeeccCCcceeeeecccceeEEEe--cCCCcce---ee-EEecCC--ceEEEe
Confidence            334457777   999999999999999999999999999999999888766  4554322   11 122222  222333


Q ss_pred             e--eeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCC
Q psy16881         95 F--VKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD  172 (222)
Q Consensus        95 ~--~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~  172 (222)
                      .  ....+.|... .....+.+.+|-..|.|++|||+.+++++||.|.+||+||..++..++.|.||..+|.+++|||+|
T Consensus       511 as~D~tArLWs~d-~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~G  589 (707)
T KOG0263|consen  511 ASHDQTARLWSTD-HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCG  589 (707)
T ss_pred             cCCCceeeeeecc-cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCC
Confidence            2  2233444322 244557788999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        173 SLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       173 ~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      ++|++|++|+.|++||+.                       +..||+||.|..|++||+.
T Consensus       590 r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  590 RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence            999999999999999984                       4679999999999999986

>KOG0271|consensus

Probab=99.96  E-value=3.4e-28  Score=192.42  Aligned_cols=157  Identities=28%  Similarity=0.429  Sum_probs=125.9

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.|.|++|+|+|++|++|+.|.++|+||+.+.+...+.  ++|..=...    +..+++.+-.+.......+..|+..
T Consensus       114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~--KgH~~WVlc----vawsPDgk~iASG~~dg~I~lwdpk  187 (480)
T KOG0271|consen  114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC--KGHKNWVLC----VAWSPDGKKIASGSKDGSIRLWDPK  187 (480)
T ss_pred             CCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee--cCCccEEEE----EEECCCcchhhccccCCeEEEecCC
Confidence            4899999999999999999999999999999987766554  444432222    3344445545555556677777654


Q ss_pred             eeccCCccccccCCCEEEEEEcC-----CCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeC
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNH-----KSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN  180 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~-----~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~  180 (222)
                      ...+..+.+.+|+..|++++|.|     ..+++++++.||.|+|||++.+.++..+.+|+..|+|+.|--+ .+|++||.
T Consensus       188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~  266 (480)
T KOG0271|consen  188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQ  266 (480)
T ss_pred             CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCC
Confidence            44556678899999999999964     4578999999999999999999999999999999999998643 58899999


Q ss_pred             CCeEEEEeC
Q psy16881        181 DKTVTIWDM  189 (222)
Q Consensus       181 D~~i~lwd~  189 (222)
                      |++|++|+.
T Consensus       267 DrtIkvw~a  275 (480)
T KOG0271|consen  267 DRTIKVWRA  275 (480)
T ss_pred             CceEEEEEc
Confidence            999999985

>KOG0272|consensus

Probab=99.95  E-value=2.1e-27  Score=189.74  Aligned_cols=184  Identities=28%  Similarity=0.435  Sum_probs=147.9

Q ss_pred             EEEeeeeeeccceEEEEEcCC--CCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee
Q psy16881         18 LILRGSVHIGSNMRCVRFSPD--TRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF   95 (222)
Q Consensus        18 ~~~~~~~~~~~~v~~l~~spd--g~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (222)
                      -+|++|   .+.|.++.|+|.  +.-+||++.||++++|+++..+.+..+  .+|.. ++.   .+.+.+.......+.+
T Consensus       211 ~~l~gH---~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l--~gH~~-RVs---~VafHPsG~~L~Tasf  281 (459)
T KOG0272|consen  211 QTLRGH---TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL--EGHLA-RVS---RVAFHPSGKFLGTASF  281 (459)
T ss_pred             EEEecc---ccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh--hcchh-hhe---eeeecCCCceeeeccc
Confidence            467777   888999999997  558999999999999999876655444  23332 221   1334444555555555


Q ss_pred             eeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEE
Q psy16881         96 VKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLL  175 (222)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l  175 (222)
                      ....+.|++.. ..+.-..++|...|.+++|+++|..++||+.|..-||||++++.++..+.+|.++|.+|.|+|+|..|
T Consensus       282 D~tWRlWD~~t-k~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~l  360 (459)
T KOG0272|consen  282 DSTWRLWDLET-KSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHL  360 (459)
T ss_pred             ccchhhccccc-chhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEE
Confidence            55566666422 22333457899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCeEEEEeCC------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        176 ASGSNDKTVTIWDML------------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       176 ~s~s~D~~i~lwd~~------------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      ||||.|.+++|||++                        +.+|++++.|++++||..++.
T Consensus       361 ATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~  420 (459)
T KOG0272|consen  361 ATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW  420 (459)
T ss_pred             eecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence            999999999999985                        458999999999999987644

>KOG0279|consensus

Probab=99.95  E-value=2.4e-26  Score=175.35  Aligned_cols=191  Identities=27%  Similarity=0.348  Sum_probs=140.0

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ   98 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (222)
                      .+.+|   +-.|..+..++||++.+++|+|+++++||+.+++....+  -+|......    +.+..+............
T Consensus        58 ~~~GH---sH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f--~GH~~dVls----va~s~dn~qivSGSrDkT  128 (315)
T KOG0279|consen   58 RLTGH---SHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF--VGHTKDVLS----VAFSTDNRQIVSGSRDKT  128 (315)
T ss_pred             eeecc---ceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE--EecCCceEE----EEecCCCceeecCCCcce
Confidence            34566   445888899999999999999999999999987554443  344333322    334444444444444444


Q ss_pred             eEeeeeeeeccCCcccc--ccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCE
Q psy16881         99 IIPTRVGVYGQDSETVG--RHTSAVTSVRFNHK--SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSL  174 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~--~h~~~i~~l~~~~~--~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~  174 (222)
                      +..|++.  +...-.+.  .+...|.|+.|+|.  +.+++++++|++||+||+++.+....+.+|+.+++.+++||||.+
T Consensus       129 iklwnt~--g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGsl  206 (315)
T KOG0279|consen  129 IKLWNTL--GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSL  206 (315)
T ss_pred             eeeeeec--ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCE
Confidence            5555431  11111111  23789999999998  569999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCeEEEEeCC---------------------CCeEEEeeCCCcEEEEeCC-CCccccCCCCc
Q psy16881        175 LASGSNDKTVTIWDML---------------------ATLLASGSNDKTVTIWDMR-GNLSVDVPLNY  220 (222)
Q Consensus       175 l~s~s~D~~i~lwd~~---------------------~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~  220 (222)
                      .++|+.||.+.+||+.                     ..+..++..+..|+|||+. +..+.++.||.
T Consensus       207 casGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~  274 (315)
T KOG0279|consen  207 CASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDG  274 (315)
T ss_pred             EecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccc
Confidence            9999999999999985                     1233334446679999998 44677777764

>KOG0272|consensus

Probab=99.93  E-value=7.1e-26  Score=181.00  Aligned_cols=186  Identities=26%  Similarity=0.366  Sum_probs=143.1

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ..+|..+.||+|++.|+|||++|.+++|...+...+.++  .+|.... ......|.. .....+.......+..|....
T Consensus       175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l--~gH~~~v-~~~~fhP~~-~~~~lat~s~Dgtvklw~~~~  250 (459)
T KOG0272|consen  175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL--RGHTSRV-GAAVFHPVD-SDLNLATASADGTVKLWKLSQ  250 (459)
T ss_pred             CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE--eccccce-eeEEEccCC-CccceeeeccCCceeeeccCC
Confidence            366888899999999999999999999999887666655  4444321 111112221 122233333444444444221


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI  186 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l  186 (222)
                       ......+.+|...|..++|+|+|+++.|++.|.+-++||+++++.+...+||+..|.+++|+++|.+++||+-|..-+|
T Consensus       251 -e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv  329 (459)
T KOG0272|consen  251 -ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV  329 (459)
T ss_pred             -CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence             1233467889999999999999999999999999999999999888888899999999999999999999999999999


Q ss_pred             EeCC-----------------------CCeEEEeeCCCcEEEEeCC-CCccccCC
Q psy16881        187 WDML-----------------------ATLLASGSNDKTVTIWDMR-GNLSVDVP  217 (222)
Q Consensus       187 wd~~-----------------------~~~l~s~~~d~~i~iwd~~-~~~~~~~~  217 (222)
                      ||++                       +..+|+||.|++++|||++ +.....+|
T Consensus       330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip  384 (459)
T KOG0272|consen  330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP  384 (459)
T ss_pred             eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc
Confidence            9986                       3479999999999999998 44555544

>KOG0286|consensus

Probab=99.93  E-value=3.7e-24  Score=164.41  Aligned_cols=186  Identities=24%  Similarity=0.387  Sum_probs=136.5

Q ss_pred             EEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEee------------ccCCCc------ceeeccce
Q psy16881         18 LILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMET------------NDRGHT------QGRIEGWG   79 (222)
Q Consensus        18 ~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~------------~~~~~~------~~~~~~~~   79 (222)
                      -+|++|   .+.|.++.|++|.++|+++|+||++.|||.-+...+.-.            .+.+..      ...+..+.
T Consensus        49 r~LkGH---~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   49 RTLKGH---LNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP  125 (343)
T ss_pred             EEeccc---ccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence            456666   899999999999999999999999999997765433211            111100      00001000


Q ss_pred             ecCcc------------------------CCcccceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcC-CCCEEE
Q psy16881         80 RVPAC------------------------PLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNH-KSSLLV  134 (222)
Q Consensus        80 ~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~  134 (222)
                       +...                        ........+........|++ +.++....+.+|.+.|.+++++| +++.++
T Consensus       126 -ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDi-e~g~~~~~f~GH~gDV~slsl~p~~~ntFv  203 (343)
T KOG0286|consen  126 -LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDI-ETGQQTQVFHGHTGDVMSLSLSPSDGNTFV  203 (343)
T ss_pred             -cccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEc-ccceEEEEecCCcccEEEEecCCCCCCeEE
Confidence             0000                        00000111111122233332 23344567889999999999999 889999


Q ss_pred             EEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC------------------------
Q psy16881        135 SGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML------------------------  190 (222)
Q Consensus       135 sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~------------------------  190 (222)
                      +|+.|++.++||++++.+++.|.+|+..|.+++|.|+|.-+++||+|++.++||++                        
T Consensus       204 Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~  283 (343)
T KOG0286|consen  204 SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK  283 (343)
T ss_pred             ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence            99999999999999999999999999999999999999999999999999999985                        


Q ss_pred             -CCeEEEeeCCCcEEEEeC
Q psy16881        191 -ATLLASGSNDKTVTIWDM  208 (222)
Q Consensus       191 -~~~l~s~~~d~~i~iwd~  208 (222)
                       +.+|.+|..|.++.+||.
T Consensus       284 SGRlLfagy~d~~c~vWDt  302 (343)
T KOG0286|consen  284 SGRLLFAGYDDFTCNVWDT  302 (343)
T ss_pred             cccEEEeeecCCceeEeec
Confidence             467888999999999996

>KOG0266|consensus

Probab=99.92  E-value=2.1e-23  Score=177.78  Aligned_cols=185  Identities=29%  Similarity=0.462  Sum_probs=147.5

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCC-CCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSD-DLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      |...|+.++|+|++++|++++.|++|++||++ ....+..+  .+|......    +.+.+.....+.......+..|++
T Consensus       202 h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l--~gH~~~v~~----~~f~p~g~~i~Sgs~D~tvriWd~  275 (456)
T KOG0266|consen  202 HTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL--KGHSTYVTS----VAFSPDGNLLVSGSDDGTVRIWDV  275 (456)
T ss_pred             cccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe--cCCCCceEE----EEecCCCCEEEEecCCCcEEEEec
Confidence            47789999999999999999999999999994 44666655  355544322    334444444455556667777775


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--eEEEeccCCcc--EEEEEEcCCCCEEEEeeC
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT--CIKTLESHTRY--VTCCTFSCDDSLLASGSN  180 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~~~~--V~~~~~s~~~~~l~s~s~  180 (222)
                      .. +.....+.+|...|++++|+++++++++++.|+.|+|||+.++.  ++..+..+...  ++++.|+|++.+|++++.
T Consensus       276 ~~-~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~  354 (456)
T KOG0266|consen  276 RT-GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL  354 (456)
T ss_pred             cC-CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence            44 44556788999999999999999999999999999999999988  56777766655  899999999999999999


Q ss_pred             CCeEEEEeCC--------------------------CCeEEEeeCCCcEEEEeCC-CCccccCC
Q psy16881        181 DKTVTIWDML--------------------------ATLLASGSNDKTVTIWDMR-GNLSVDVP  217 (222)
Q Consensus       181 D~~i~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~-~~~~~~~~  217 (222)
                      |+.+++||+.                          +.++++|++|+.|++||+. +..+.++.
T Consensus       355 d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~  418 (456)
T KOG0266|consen  355 DRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE  418 (456)
T ss_pred             CCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc
Confidence            9999999984                          3579999999999999998 43444443

>KOG0271|consensus

Probab=99.92  E-value=4.6e-24  Score=169.11  Aligned_cols=95  Identities=34%  Similarity=0.592  Sum_probs=89.0

Q ss_pred             cccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC--
Q psy16881        113 TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML--  190 (222)
Q Consensus       113 ~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~--  190 (222)
                      .+.+|..-|+.+.|+|+++++++++.|+.||+||-++++.+.+|.+|-..|..++|+.|.++|+++|.|.++++||++  
T Consensus       362 rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk  441 (480)
T KOG0271|consen  362 RMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK  441 (480)
T ss_pred             hhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee
Confidence            355788999999999999999999999999999999999999999999999999999999999999999999999985  


Q ss_pred             ---------------------CCeEEEeeCCCcEEEEe
Q psy16881        191 ---------------------ATLLASGSNDKTVTIWD  207 (222)
Q Consensus       191 ---------------------~~~l~s~~~d~~i~iwd  207 (222)
                                           +..+++|+.|+.+++|.
T Consensus       442 Kl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  442 KLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             eecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence                                 45799999999999994

>KOG0291|consensus

Probab=99.92  E-value=1.4e-23  Score=178.08  Aligned_cols=177  Identities=28%  Similarity=0.427  Sum_probs=136.2

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ...+.++++||||+++|||+.||+|++||...+.+..++..  |.... .+   +.+.......+.+.....++.|+...
T Consensus       350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte--Hts~V-t~---v~f~~~g~~llssSLDGtVRAwDlkR  423 (893)
T KOG0291|consen  350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE--HTSGV-TA---VQFTARGNVLLSSSLDGTVRAWDLKR  423 (893)
T ss_pred             ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc--CCCce-EE---EEEEecCCEEEEeecCCeEEeeeecc
Confidence            67899999999999999999999999999999889888743  32221 11   12222223334444455566665322


Q ss_pred             eccCCcccc-ccCCCEEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeE
Q psy16881        107 YGQDSETVG-RHTSAVTSVRFNHKSSLLVSGSVDKT-VKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTV  184 (222)
Q Consensus       107 ~~~~~~~~~-~h~~~i~~l~~~~~~~~l~sg~~dg~-I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i  184 (222)
                      .. ..+.+. .......|++.+|.|..+..|+.|.. |.+|+.++++.+-.+.||+.+|.+++|+|.+..|+++|+|++|
T Consensus       424 Yr-NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTV  502 (893)
T KOG0291|consen  424 YR-NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTV  502 (893)
T ss_pred             cc-eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceE
Confidence            11 111111 12345678999999999999998875 9999999999999999999999999999999999999999999


Q ss_pred             EEEeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        185 TIWDML-----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       185 ~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      ++||+-                       +..+++++-||.|.+||.+.
T Consensus       503 RiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~  551 (893)
T KOG0291|consen  503 RIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKE  551 (893)
T ss_pred             EEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence            999973                       46799999999999999873

>KOG0281|consensus

Probab=99.92  E-value=1.4e-24  Score=170.42  Aligned_cols=186  Identities=26%  Similarity=0.498  Sum_probs=138.0

Q ss_pred             EeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeee
Q psy16881         20 LRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQI   99 (222)
Q Consensus        20 ~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (222)
                      +.+|   .+.|.|+.|  +.++|++||.|.+|++||+.+++.+.+.  -.|......    +-+  .............+
T Consensus       233 L~GH---tGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tl--ihHceaVLh----lrf--~ng~mvtcSkDrsi  299 (499)
T KOG0281|consen  233 LTGH---TGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTL--IHHCEAVLH----LRF--SNGYMVTCSKDRSI  299 (499)
T ss_pred             hhcC---CCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHH--hhhcceeEE----EEE--eCCEEEEecCCcee
Confidence            3455   889999998  6679999999999999999998876543  122221110    000  01111111222234


Q ss_pred             Eeeeeeeecc--CCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881        100 IPTRVGVYGQ--DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       100 ~~~~~~~~~~--~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s  177 (222)
                      ..|+......  .-+++.+|...|+.+.|+  .+++++++.|.+|++|++.+.+++.++.+|...|.|+.+  .++++++
T Consensus       300 aVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVS  375 (499)
T KOG0281|consen  300 AVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVS  375 (499)
T ss_pred             EEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEe
Confidence            4454322211  114677899999999996  469999999999999999999999999999999988774  6999999


Q ss_pred             eeCCCeEEEEeCC---------------------CCeEEEeeCCCcEEEEeCCCCccccCCCCccC
Q psy16881        178 GSNDKTVTIWDML---------------------ATLLASGSNDKTVTIWDMRGNLSVDVPLNYCC  222 (222)
Q Consensus       178 ~s~D~~i~lwd~~---------------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  222 (222)
                      ||.|.+|++||+.                     ...++||+.||+|++||+...++.+.|-...|
T Consensus       376 GSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~C  441 (499)
T KOG0281|consen  376 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLC  441 (499)
T ss_pred             cCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchH
Confidence            9999999999984                     46799999999999999998888777765554

>KOG0266|consensus

Probab=99.91  E-value=6.8e-23  Score=174.71  Aligned_cols=181  Identities=35%  Similarity=0.567  Sum_probs=144.9

Q ss_pred             eeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc--eEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEe
Q psy16881         24 VHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS--LIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIP  101 (222)
Q Consensus        24 ~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (222)
                      .++...|.|+.|+|+|++|++++.|+.+++|+.....  ...+.  .+|.....    .+.+.++....+.+.....+..
T Consensus       156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l--~~h~~~v~----~~~fs~d~~~l~s~s~D~tiri  229 (456)
T KOG0266|consen  156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL--SGHTRGVS----DVAFSPDGSYLLSGSDDKTLRI  229 (456)
T ss_pred             ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc--ccccccee----eeEECCCCcEEEEecCCceEEE
Confidence            4457889999999999999999999999999996655  33322  22322211    1334444444555555666777


Q ss_pred             eeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCC
Q psy16881        102 TRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSND  181 (222)
Q Consensus       102 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D  181 (222)
                      |+.........++.+|...|++++|+|+++.+++|+.|++|+|||+++++++..+.+|.+.|.+++|++++++|++++.|
T Consensus       230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d  309 (456)
T KOG0266|consen  230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD  309 (456)
T ss_pred             eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence            76532233446778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCC---------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        182 KTVTIWDML---------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       182 ~~i~lwd~~---------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +.|++||+.                           ..+++++..|+.+++||+++
T Consensus       310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~  365 (456)
T KOG0266|consen  310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS  365 (456)
T ss_pred             ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC
Confidence            999999973                           24688899999999999983

>KOG0284|consensus

Probab=99.91  E-value=7.8e-24  Score=168.83  Aligned_cols=199  Identities=24%  Similarity=0.397  Sum_probs=149.0

Q ss_pred             CCcccceEEEeee-eeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCccc
Q psy16881         11 SLFNGTELILRGS-VHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT   89 (222)
Q Consensus        11 ~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (222)
                      .||||+.+.+... -.|.+.|+++.|+++|.++++|+.+|.|++|+..-.... ..  +++..+.+..   +.+++.  .
T Consensus       121 tLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk-~~--~ahh~eaIRd---lafSpn--D  192 (464)
T KOG0284|consen  121 TLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK-II--QAHHAEAIRD---LAFSPN--D  192 (464)
T ss_pred             EEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH-Hh--hHhhhhhhhe---eccCCC--C
Confidence            5788876655433 224788999999999999999999999999986422211 11  2222222221   222221  1


Q ss_pred             ceeeee--eeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEE
Q psy16881         90 RVFSTF--VKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCT  167 (222)
Q Consensus        90 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~  167 (222)
                      ..|.++  ...+..|+. ....+..++.+|...|.+++|+|....+++|+.|+.|++||.+++.|+.++.+|+..|..+.
T Consensus       193 skF~t~SdDg~ikiWdf-~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~  271 (464)
T KOG0284|consen  193 SKFLTCSDDGTIKIWDF-RMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK  271 (464)
T ss_pred             ceeEEecCCCeEEEEec-cCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEE
Confidence            223232  234555542 22334456789999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEeeCCCeEEEEeCC------------------------CCeEEEeeCCCcEEEEeCC-CCccccCCC
Q psy16881        168 FSCDDSLLASGSNDKTVTIWDML------------------------ATLLASGSNDKTVTIWDMR-GNLSVDVPL  218 (222)
Q Consensus       168 ~s~~~~~l~s~s~D~~i~lwd~~------------------------~~~l~s~~~d~~i~iwd~~-~~~~~~~~~  218 (222)
                      |++++++|+|+|.|..++++|++                        ..++++|+.|+.|..|.+- .+.+..+|+
T Consensus       272 f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~  347 (464)
T KOG0284|consen  272 FNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP  347 (464)
T ss_pred             EcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCc
Confidence            99999999999999999999985                        2579999999999999988 445555443

>PTZ00421 coronin; Provisional

Probab=99.91  E-value=1.5e-22  Score=172.96  Aligned_cols=143  Identities=26%  Similarity=0.430  Sum_probs=117.0

Q ss_pred             eccceEEEEEcC-CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         26 IGSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        26 ~~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      |.+.|.+++|+| ++++|++|+.|++|++|++.+.......                                       
T Consensus        74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~---------------------------------------  114 (493)
T PTZ00421         74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI---------------------------------------  114 (493)
T ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc---------------------------------------
Confidence            378899999999 8899999999999999998643211000                                       


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKT  183 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~  183 (222)
                         ......+.+|...|.+++|+|.+ ++|++++.|++|+|||+++++.+..+.+|...|.+++|+|++.+|++++.|++
T Consensus       115 ---~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~  191 (493)
T PTZ00421        115 ---SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK  191 (493)
T ss_pred             ---CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCE
Confidence               00001234689999999999986 69999999999999999999988899999999999999999999999999999


Q ss_pred             EEEEeCCC------------------------CeEEEee----CCCcEEEEeCCC
Q psy16881        184 VTIWDMLA------------------------TLLASGS----NDKTVTIWDMRG  210 (222)
Q Consensus       184 i~lwd~~~------------------------~~l~s~~----~d~~i~iwd~~~  210 (222)
                      |++||++.                        ..+++++    .|+.|++||++.
T Consensus       192 IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        192 LNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             EEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence            99999841                        2355443    478999999973

>KOG0316|consensus

Probab=99.90  E-value=3.9e-22  Score=149.41  Aligned_cols=155  Identities=28%  Similarity=0.370  Sum_probs=105.4

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      +.+.|+.++|+-||+|.++++.|.+|++|++..+.++.++  ++|..+.....    ...+............+..|++ 
T Consensus        16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY--sghG~EVlD~~----~s~Dnskf~s~GgDk~v~vwDV-   88 (307)
T KOG0316|consen   16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY--SGHGHEVLDAA----LSSDNSKFASCGGDKAVQVWDV-   88 (307)
T ss_pred             cccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee--cCCCceeeecc----ccccccccccCCCCceEEEEEc-
Confidence            3788999999999999999999999999999999999887  45544433211    1111111111122233445553 


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CceEEEeccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS--LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKT  183 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~--~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~  183 (222)
                      ..++..+.+.+|.+.|+.++|+.+...+++|+.|.++++||+++  .++++.+..-.+.|.++...  +..|++||.||+
T Consensus        89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt  166 (307)
T KOG0316|consen   89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT  166 (307)
T ss_pred             ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence            34555678899999999999999999999999999999999975  34555554444444444332  344555555555


Q ss_pred             EEEEeC
Q psy16881        184 VTIWDM  189 (222)
Q Consensus       184 i~lwd~  189 (222)
                      ++.||+
T Consensus       167 vRtydi  172 (307)
T KOG0316|consen  167 VRTYDI  172 (307)
T ss_pred             EEEEEe
Confidence            555554

>KOG0279|consensus

Probab=99.90  E-value=4.5e-22  Score=152.05  Aligned_cols=180  Identities=26%  Similarity=0.466  Sum_probs=130.4

Q ss_pred             EEeeeeeeccceEEEEEcCC-CCeEEEecCCCeEEEEeCCCCc-----eEEeeccCCCcceeeccceecCccCCccccee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPD-TRLLATGGDDETVTVWRSDDLS-----LIMETNDRGHTQGRIEGWGRVPACPLCRTRVF   92 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spd-g~~l~tgs~Dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (222)
                      ++.+|   .+-|..++..+. .+.|++++.|.++.+|++..-.     .+..+  .+|.... ..   +.........+.
T Consensus        10 tl~gh---~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~--~GHsH~v-~d---v~~s~dg~~alS   80 (315)
T KOG0279|consen   10 TLEGH---TDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL--TGHSHFV-SD---VVLSSDGNFALS   80 (315)
T ss_pred             eecCC---CceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee--eccceEe-cc---eEEccCCceEEe
Confidence            34455   788999999887 4588999999999999986431     11111  2222111 00   111112222222


Q ss_pred             eeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccC--CccEEEEEEcC
Q psy16881         93 STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESH--TRYVTCCTFSC  170 (222)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~--~~~V~~~~~s~  170 (222)
                      +......+.|+.. .++..+.+.+|+..|.+++|+++++.+++|+.|++|++|++..+ +..++..+  ...|.|++|+|
T Consensus        81 ~swD~~lrlWDl~-~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP  158 (315)
T KOG0279|consen   81 ASWDGTLRLWDLA-TGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSP  158 (315)
T ss_pred             ccccceEEEEEec-CCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcC
Confidence            3334456666642 23455678899999999999999999999999999999998854 44444333  78999999999


Q ss_pred             C--CCEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        171 D--DSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       171 ~--~~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      +  ..+|+++|+|+++++||+.                       +.++++|+.|+++.+||++
T Consensus       159 ~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~  222 (315)
T KOG0279|consen  159 NESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN  222 (315)
T ss_pred             CCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEcc
Confidence            8  7899999999999999984                       4689999999999999998

>KOG0285|consensus

Probab=99.90  E-value=2.4e-22  Score=158.28  Aligned_cols=156  Identities=24%  Similarity=0.381  Sum_probs=121.5

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      .+=|+|+++.|-.+.+++|+.|++++|||+.++.+..+.  .+|... +.   .+.++....+.+.......+.=|+. .
T Consensus       151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl--tGhi~~-vr---~vavS~rHpYlFs~gedk~VKCwDL-e  223 (460)
T KOG0285|consen  151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL--TGHIET-VR---GVAVSKRHPYLFSAGEDKQVKCWDL-E  223 (460)
T ss_pred             cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee--cchhhe-ee---eeeecccCceEEEecCCCeeEEEec-h
Confidence            577999999999999999999999999999999887665  233221 11   1222333333333333333333331 2


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI  186 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l  186 (222)
                      ..+-.+-..+|-+.|.|++.+|.-..+++|+.|.++||||+++...+..+.+|...|..+.+.|-...++++|.|++|++
T Consensus       224 ~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrl  303 (460)
T KOG0285|consen  224 YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRL  303 (460)
T ss_pred             hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEE
Confidence            22333455679999999999999999999999999999999999999999999999999999998999999999999999


Q ss_pred             EeC
Q psy16881        187 WDM  189 (222)
Q Consensus       187 wd~  189 (222)
                      ||+
T Consensus       304 WDl  306 (460)
T KOG0285|consen  304 WDL  306 (460)
T ss_pred             eee
Confidence            997

>KOG0275|consensus

Probab=99.90  E-value=8.9e-24  Score=164.79  Aligned_cols=165  Identities=31%  Similarity=0.541  Sum_probs=134.9

Q ss_pred             CCCCCCCCCcccce-----------------EEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeec
Q psy16881          4 FPMGDGPSLFNGTE-----------------LILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETN   66 (222)
Q Consensus         4 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~   66 (222)
                      +|.|---.||-|+-                 +++..    .+-+-|..|||||+||++||-||-|.+|++-++.......
T Consensus       177 LPPGt~iDLFRGkAA~K~~~Ee~~Pt~l~r~IKFg~----KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk  252 (508)
T KOG0275|consen  177 LPPGTTIDLFRGKAAMKDQEEERYPTQLARSIKFGQ----KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK  252 (508)
T ss_pred             CCCCceeeeccchhhhhhhHhhhchHHhhhheeccc----ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhh
Confidence            68888888898871                 12211    3447788999999999999999999999987665443221


Q ss_pred             cCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy16881         67 DRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWD  146 (222)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd  146 (222)
                      .++                                         ...+--+..+|.|+.|+.+..++++|+.||.|++|.
T Consensus       253 YQA-----------------------------------------qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr  291 (508)
T KOG0275|consen  253 YQA-----------------------------------------QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR  291 (508)
T ss_pred             hhh-----------------------------------------hcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence            110                                         001112578899999999999999999999999999


Q ss_pred             CCCCceEEEec-cCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCc
Q psy16881        147 VPSLTCIKTLE-SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKT  202 (222)
Q Consensus       147 ~~~~~~~~~~~-~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~  202 (222)
                      +.++.|+..|. +|+..|+|+.||.|+..+.+++.|.++++..+.                       +..+++++.|++
T Consensus       292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt  371 (508)
T KOG0275|consen  292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT  371 (508)
T ss_pred             EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc
Confidence            99999999887 899999999999999999999999999999874                       467999999999


Q ss_pred             EEEEeCC-CCcc
Q psy16881        203 VTIWDMR-GNLS  213 (222)
Q Consensus       203 i~iwd~~-~~~~  213 (222)
                      |++|+.+ +++.
T Consensus       372 vkvW~~KtteC~  383 (508)
T KOG0275|consen  372 VKVWHGKTTECL  383 (508)
T ss_pred             EEEecCcchhhh
Confidence            9999998 6654

>KOG0273|consensus

Probab=99.89  E-value=1.1e-21  Score=158.99  Aligned_cols=182  Identities=25%  Similarity=0.365  Sum_probs=137.0

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee--eeeeEeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF--VKQIIPTR  103 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  103 (222)
                      |.++|.+|.|+.+|.||++++-||++.+||..+++....+.......--+.....         ..|+..  ...+....
T Consensus       275 HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~---------~~F~ts~td~~i~V~k  345 (524)
T KOG0273|consen  275 HKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN---------DEFATSSTDGCIHVCK  345 (524)
T ss_pred             cCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC---------ceEeecCCCceEEEEE
Confidence            4899999999999999999999999999999888766554221111000111110         011111  11222222


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCC---------CE
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD---------SL  174 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~---------~~  174 (222)
                      ++... +...+.+|..+|.++.|+|.+..|++++.|++++||+..+..+...+.+|++.|..+.|+|.|         ..
T Consensus       346 v~~~~-P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~  424 (524)
T KOG0273|consen  346 VGEDR-PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLM  424 (524)
T ss_pred             ecCCC-cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCce
Confidence            22222 223456799999999999999999999999999999999888899999999999999999864         48


Q ss_pred             EEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCC-CCccccCC
Q psy16881        175 LASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMR-GNLSVDVP  217 (222)
Q Consensus       175 l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~-~~~~~~~~  217 (222)
                      |++++.|.++++||+.                       +.++|+|+.|+.|.+|+.+ +++++...
T Consensus       425 l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~  491 (524)
T KOG0273|consen  425 LASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ  491 (524)
T ss_pred             EEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec
Confidence            9999999999999973                       4689999999999999998 55554433

>KOG0265|consensus

Probab=99.89  E-value=8.2e-22  Score=151.99  Aligned_cols=142  Identities=27%  Similarity=0.461  Sum_probs=120.5

Q ss_pred             eeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEe
Q psy16881         22 GSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIP  101 (222)
Q Consensus        22 ~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (222)
                      .-+||.+.|..+.|+|+|.+||+|+.|..|.+|++..-.                           .             
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc---------------------------e-------------   81 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC---------------------------E-------------   81 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc---------------------------c-------------
Confidence            336678999999999999999999999999999864210                           0             


Q ss_pred             eeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEE-EeeC
Q psy16881        102 TRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA-SGSN  180 (222)
Q Consensus       102 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~-s~s~  180 (222)
                              ...++.+|+++|..+.|.++++.+++++.|++|+.||.++++++.++++|...|.++.-+..|..|+ +++.
T Consensus        82 --------N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sgsd  153 (338)
T KOG0265|consen   82 --------NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSD  153 (338)
T ss_pred             --------ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCC
Confidence                    0012347999999999999999999999999999999999999999999999999988666666554 7999


Q ss_pred             CCeEEEEeCC----------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        181 DKTVTIWDML----------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       181 D~~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      |++++|||++                      ...+.+|+-|+.|++||++.+
T Consensus       154 D~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~  206 (338)
T KOG0265|consen  154 DGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN  206 (338)
T ss_pred             CceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccC
Confidence            9999999996                      245889999999999999743

>KOG0292|consensus

Probab=99.89  E-value=3.4e-22  Score=172.42  Aligned_cols=115  Identities=33%  Similarity=0.636  Sum_probs=106.5

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.++|+.++|+|++.++++||+|.+|++|+++..++..+.                                        
T Consensus        50 HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL----------------------------------------   89 (1202)
T KOG0292|consen   50 HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL----------------------------------------   89 (1202)
T ss_pred             cCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh----------------------------------------
Confidence            4899999999999999999999999999998866655332                                        


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                               -+|-+-|..+.||+.-..++|+|.|.+||||+-.+++++..+.||+.+|+|..|+|....|+|||=|.+|+
T Consensus        90 ---------~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR  160 (1202)
T KOG0292|consen   90 ---------LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR  160 (1202)
T ss_pred             ---------ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence                     35888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeC
Q psy16881        186 IWDM  189 (222)
Q Consensus       186 lwd~  189 (222)
                      +||+
T Consensus       161 VWDi  164 (1202)
T KOG0292|consen  161 VWDI  164 (1202)
T ss_pred             EEee
Confidence            9997

>KOG0315|consensus

Probab=99.88  E-value=8e-21  Score=143.35  Aligned_cols=176  Identities=23%  Similarity=0.344  Sum_probs=132.3

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ..+|..+.|..+|+...+||.||+++|||+....+.+++...    .++...-..+   .-...........+..|+.+.
T Consensus        83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~----spVn~vvlhp---nQteLis~dqsg~irvWDl~~  155 (311)
T KOG0315|consen   83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN----SPVNTVVLHP---NQTELISGDQSGNIRVWDLGE  155 (311)
T ss_pred             CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC----CCcceEEecC---CcceEEeecCCCcEEEEEccC
Confidence            788999999999999999999999999999886665554221    1111111011   111122233445677777544


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC------ceEEEeccCCccEEEEEEcCCCCEEEEeeC
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL------TCIKTLESHTRYVTCCTFSCDDSLLASGSN  180 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~------~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~  180 (222)
                      .......+......|.++...++|.+++.+..-|...+|++-..      +.+.++++|+..+..+.+||++++||++|.
T Consensus       156 ~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss  235 (311)
T KOG0315|consen  156 NSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS  235 (311)
T ss_pred             CccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence            32222222233467999999999999999999999999998542      345678899999999999999999999999


Q ss_pred             CCeEEEEeCC------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        181 DKTVTIWDML------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       181 D~~i~lwd~~------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      |.+++||+..                        +.+|++|+.|+..++||++
T Consensus       236 dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  236 DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             CceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence            9999999863                        5689999999999999998

>KOG0283|consensus

Probab=99.88  E-value=7.2e-22  Score=169.36  Aligned_cols=185  Identities=23%  Similarity=0.395  Sum_probs=125.1

Q ss_pred             eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEE-eeccCCCcceeecc---ceecCccC---Ccccceeee--e
Q psy16881         25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIM-ETNDRGHTQGRIEG---WGRVPACP---LCRTRVFST--F   95 (222)
Q Consensus        25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~--~   95 (222)
                      -|.+.|-++.||+||+|||+||.|+.|+||.+-...... ...........+..   ........   .........  .
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            467889999999999999999999999999876422110 00000000000000   00000000   000000000  0


Q ss_pred             eee-eEeeee-eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcC-CC
Q psy16881         96 VKQ-IIPTRV-GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSC-DD  172 (222)
Q Consensus        96 ~~~-~~~~~~-~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~-~~  172 (222)
                      ... ..+... .........+.+|.+.|..|.|+. +++|++++.|++||+|++...+|+..| .|.+.|+|++|+| |.
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDD  422 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDD  422 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCC
Confidence            000 000010 112233456789999999999986 578999999999999999999999888 5899999999998 78


Q ss_pred             CEEEEeeCCCeEEEEeCC----------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        173 SLLASGSNDKTVTIWDML----------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       173 ~~l~s~s~D~~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      +++++||=|++++||++.                      +...+.|+.+|.+++|+..+.
T Consensus       423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l  483 (712)
T KOG0283|consen  423 RYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL  483 (712)
T ss_pred             CcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence            999999999999999984                      567889999999999998854

>KOG0295|consensus

Probab=99.88  E-value=5.7e-21  Score=150.61  Aligned_cols=174  Identities=26%  Similarity=0.440  Sum_probs=131.9

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee--eeEeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK--QIIPTRV  104 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  104 (222)
                      .-.|+++.|-|.|.+|++++.|.+|+.|+++++.++.++.  +|.. -+..   +...  .....++....  .+..|..
T Consensus       193 ~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~--~h~e-wvr~---v~v~--~DGti~As~s~dqtl~vW~~  264 (406)
T KOG0295|consen  193 EHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP--GHSE-WVRM---VRVN--QDGTIIASCSNDQTLRVWVV  264 (406)
T ss_pred             ccceeeEEEEecCCeeeecccccceeEEecccceeEEecc--CchH-hEEE---EEec--CCeeEEEecCCCceEEEEEe
Confidence            5569999999999999999999999999999999888763  2221 1110   1111  11112222221  2333322


Q ss_pred             eeeccCCccccccCCCEEEEEEcCC---------------CCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEc
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHK---------------SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS  169 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~---------------~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s  169 (222)
                       ...+-+..+..|..+|.+++|-|.               ++++.+++.|++||+||+.++.|+.++.+|..+|..++|+
T Consensus       265 -~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~  343 (406)
T KOG0295|consen  265 -ATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFS  343 (406)
T ss_pred             -ccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEc
Confidence             122223456779999999988431               2589999999999999999999999999999999999999


Q ss_pred             CCCCEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        170 CDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       170 ~~~~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      |.|++|+++.+|+++++||+.                       .+++++|+-|-++++|.-|
T Consensus       344 p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEcr  406 (406)
T KOG0295|consen  344 PGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  406 (406)
T ss_pred             CCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeecC
Confidence            999999999999999999984                       3689999999999999743

>PTZ00420 coronin; Provisional

Probab=99.88  E-value=7.5e-21  Score=163.85  Aligned_cols=142  Identities=18%  Similarity=0.358  Sum_probs=112.3

Q ss_pred             eccceEEEEEcCC-CCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         26 IGSNMRCVRFSPD-TRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        26 ~~~~v~~l~~spd-g~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      |.+.|.+++|+|+ +++|++|+.||+|++|++.+.......               ..                      
T Consensus        73 H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~---------------i~----------------------  115 (568)
T PTZ00420         73 HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE---------------IK----------------------  115 (568)
T ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc---------------cc----------------------
Confidence            3788999999997 789999999999999998643110000               00                      


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSL-LVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKT  183 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~-l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~  183 (222)
                          .....+.+|...|.+++|+|++.. +++++.|++|+|||+++++.+..+. |...|.+++|+++|.+|++++.|++
T Consensus       116 ----~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~  190 (568)
T PTZ00420        116 ----DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKH  190 (568)
T ss_pred             ----cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCE
Confidence                000113468899999999999874 6799999999999999988777765 5577999999999999999999999


Q ss_pred             EEEEeCCC----------------------------CeEEEeeCC----CcEEEEeCC
Q psy16881        184 VTIWDMLA----------------------------TLLASGSND----KTVTIWDMR  209 (222)
Q Consensus       184 i~lwd~~~----------------------------~~l~s~~~d----~~i~iwd~~  209 (222)
                      |++||+++                            .++++++.|    +.|+|||++
T Consensus       191 IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr  248 (568)
T PTZ00420        191 MHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK  248 (568)
T ss_pred             EEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence            99999841                            246777766    479999998

>KOG0286|consensus

Probab=99.87  E-value=8.4e-21  Score=146.05  Aligned_cols=174  Identities=28%  Similarity=0.391  Sum_probs=134.4

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeee-eeeeeEeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFST-FVKQIIPTRV  104 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  104 (222)
                      |.+-++|..|-+|+ .|+|+|.|.++.+||++++.....+  .+|....+.    +...+.....+.+. .......|++
T Consensus       144 HtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f--~GH~gDV~s----lsl~p~~~ntFvSg~cD~~aklWD~  216 (343)
T KOG0286|consen  144 HTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVF--HGHTGDVMS----LSLSPSDGNTFVSGGCDKSAKLWDV  216 (343)
T ss_pred             ccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEe--cCCcccEEE----EecCCCCCCeEEecccccceeeeec
Confidence            38889999998755 5779999999999999999888777  455544332    33333222233333 3333445554


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccC--CccEEEEEEcCCCCEEEEeeCCC
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESH--TRYVTCCTFSCDDSLLASGSNDK  182 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~--~~~V~~~~~s~~~~~l~s~s~D~  182 (222)
                      .. +...+.|.+|...|++++|.|+|.-|++|+.|+++|+||++..+.+..++..  ...|++++||..|++|++|..|.
T Consensus       217 R~-~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~  295 (343)
T KOG0286|consen  217 RS-GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF  295 (343)
T ss_pred             cC-cceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCC
Confidence            32 2445678899999999999999999999999999999999988777766543  23589999999999999999999


Q ss_pred             eEEEEeCC-----------------------CCeEEEeeCCCcEEEEe
Q psy16881        183 TVTIWDML-----------------------ATLLASGSNDKTVTIWD  207 (222)
Q Consensus       183 ~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd  207 (222)
                      ++.+||..                       +.-+++||.|.++|||.
T Consensus       296 ~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  296 TCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            99999963                       45699999999999994

>KOG0319|consensus

Probab=99.87  E-value=2e-21  Score=164.64  Aligned_cols=133  Identities=31%  Similarity=0.656  Sum_probs=120.9

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.-.|+|++++|+.+++||||+|.+.+||+++..+...                                          
T Consensus       462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~------------------------------------------  499 (775)
T KOG0319|consen  462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLG------------------------------------------  499 (775)
T ss_pred             hcccccceEecCCCceEEecccccceeeecccCceEEE------------------------------------------
Confidence            36789999999999999999999999999987433221                                          


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                             ++.+|+-.|.+++|++..+.++|+|.|++||||.+.++.|++++.||+..|--++|-.+|..|++++.||-++
T Consensus       500 -------vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliK  572 (775)
T KOG0319|consen  500 -------VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIK  572 (775)
T ss_pred             -------EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEE
Confidence                   2457999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCC-----------------------CCeEEEeeCCCcEEEEe
Q psy16881        186 IWDML-----------------------ATLLASGSNDKTVTIWD  207 (222)
Q Consensus       186 lwd~~-----------------------~~~l~s~~~d~~i~iwd  207 (222)
                      +|+++                       ..++++|+.|+.|.+|.
T Consensus       573 lWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  573 LWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             EEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            99985                       35789999999999995

>KOG0263|consensus

Probab=99.87  E-value=1e-21  Score=167.44  Aligned_cols=157  Identities=26%  Similarity=0.404  Sum_probs=125.8

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ..+|-+++|+|-|-|+||+|.|++.++|..+.....+.+  .+|.... .+   +.+.+.+...+.......++.|++ .
T Consensus       493 ~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif--aghlsDV-~c---v~FHPNs~Y~aTGSsD~tVRlWDv-~  565 (707)
T KOG0263|consen  493 LAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF--AGHLSDV-DC---VSFHPNSNYVATGSSDRTVRLWDV-S  565 (707)
T ss_pred             CcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh--ccccccc-ce---EEECCcccccccCCCCceEEEEEc-C
Confidence            688999999999999999999999999988765444333  2333221 11   223333444444444445667764 3


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI  186 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l  186 (222)
                      .+...+.|.+|+++|++++|+|.|+++++|+.||.|+|||+.+++.+..+.+|+..|.+++|+.+|.+||+|+.|.+|++
T Consensus       566 ~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~l  645 (707)
T KOG0263|consen  566 TGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRL  645 (707)
T ss_pred             CCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEE
Confidence            34455778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCC
Q psy16881        187 WDML  190 (222)
Q Consensus       187 wd~~  190 (222)
                      ||+.
T Consensus       646 WD~~  649 (707)
T KOG0263|consen  646 WDLT  649 (707)
T ss_pred             EEch
Confidence            9985

>KOG0645|consensus

Probab=99.87  E-value=2.1e-20  Score=142.54  Aligned_cols=180  Identities=26%  Similarity=0.346  Sum_probs=133.1

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.-.||.++|+|.|++|++||-|.++-||.-.+.+......-.+|..+.-.    +.++......+.-.....+..|.+.
T Consensus        60 hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~----Vaws~sG~~LATCSRDKSVWiWe~d  135 (312)
T KOG0645|consen   60 HKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKC----VAWSASGNYLATCSRDKSVWIWEID  135 (312)
T ss_pred             chheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeE----EEEcCCCCEEEEeeCCCeEEEEEec
Confidence            467799999999999999999999999998665443322222444433211    2222222222222233344444432


Q ss_pred             eec--cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC---CCceEEEeccCCccEEEEEEcCCCCEEEEeeC
Q psy16881        106 VYG--QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP---SLTCIKTLESHTRYVTCCTFSCDDSLLASGSN  180 (222)
Q Consensus       106 ~~~--~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~---~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~  180 (222)
                      ...  ....++..|+..|..+.|||....|++++.|++||+|+-.   +-.++.++.+|+..|.++.|++.|..|++++.
T Consensus       136 eddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd  215 (312)
T KOG0645|consen  136 EDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD  215 (312)
T ss_pred             CCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC
Confidence            111  1124677899999999999999999999999999999765   34788999999999999999999999999999


Q ss_pred             CCeEEEEeCC-----------------CCeEEEeeCCCcEEEEeCC
Q psy16881        181 DKTVTIWDML-----------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       181 D~~i~lwd~~-----------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      |++++||-..                 ...++|++.|+.|+++.-.
T Consensus       216 D~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s  261 (312)
T KOG0645|consen  216 DGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKES  261 (312)
T ss_pred             CcceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEec
Confidence            9999999732                 3479999999999999765

>KOG0319|consensus

Probab=99.87  E-value=5.4e-21  Score=162.08  Aligned_cols=187  Identities=28%  Similarity=0.434  Sum_probs=132.5

Q ss_pred             eEEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEE-e-eccCCCcceeeccceecCccCCcccceeee
Q psy16881         17 ELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIM-E-TNDRGHTQGRIEGWGRVPACPLCRTRVFST   94 (222)
Q Consensus        17 ~~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (222)
                      +..+.+|   .+.|.+++...+|.+|+|||.|+++++|++++..... . ....+|... +..   +..+ .....++..
T Consensus       358 c~ii~GH---~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s-vga---va~~-~~~asffvs  429 (775)
T KOG0319|consen  358 CQIIPGH---TEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS-VGA---VAGS-KLGASFFVS  429 (775)
T ss_pred             eEEEeCc---hhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccc-cce---eeec-ccCccEEEE
Confidence            3344555   8889999876788999999999999999884332111 0 001122211 000   1110 111122222


Q ss_pred             e--eeeeEeeeeee--ec--cC----CccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEE
Q psy16881         95 F--VKQIIPTRVGV--YG--QD----SETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVT  164 (222)
Q Consensus        95 ~--~~~~~~~~~~~--~~--~~----~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~  164 (222)
                      .  ...+..|..+.  ..  +.    ..+...|...|++++++|+.+.++|||.|++.+||++.+...+..+.+|+..|+
T Consensus       430 vS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw  509 (775)
T KOG0319|consen  430 VSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVW  509 (775)
T ss_pred             ecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceE
Confidence            1  12233333211  00  00    113346899999999999999999999999999999999899999999999999


Q ss_pred             EEEEcCCCCEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        165 CCTFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       165 ~~~~s~~~~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      |+.|++..+.++|+|.|++|+||.+.                       ...|+|++.||.|++|+++++
T Consensus       510 ~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~  579 (775)
T KOG0319|consen  510 CVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN  579 (775)
T ss_pred             EEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence            99999999999999999999999973                       468999999999999999843

>PTZ00421 coronin; Provisional

Probab=99.87  E-value=4e-20  Score=158.15  Aligned_cols=135  Identities=24%  Similarity=0.446  Sum_probs=110.8

Q ss_pred             ccceEEEEEcCCC-CeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         27 GSNMRCVRFSPDT-RLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        27 ~~~v~~l~~spdg-~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      ...|.+++|+|++ ++|++|+.|++|+|||+.++.....                                         
T Consensus       125 ~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~-----------------------------------------  163 (493)
T PTZ00421        125 TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEV-----------------------------------------  163 (493)
T ss_pred             CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEE-----------------------------------------
Confidence            7889999999986 6899999999999999875432211                                         


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCcc-EEEEEEcCCCCEEEEee----C
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRY-VTCCTFSCDDSLLASGS----N  180 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~-V~~~~~s~~~~~l~s~s----~  180 (222)
                              +..|...|.+++|+++++++++++.|+.|+|||+++++.+.++.+|... +..+.|.+++..|++++    .
T Consensus       164 --------l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~  235 (493)
T PTZ00421        164 --------IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQ  235 (493)
T ss_pred             --------EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCC
Confidence                    1347888999999999999999999999999999999998888888764 34677888888887654    4


Q ss_pred             CCeEEEEeCC-------------------------CCeEEEee-CCCcEEEEeCCC
Q psy16881        181 DKTVTIWDML-------------------------ATLLASGS-NDKTVTIWDMRG  210 (222)
Q Consensus       181 D~~i~lwd~~-------------------------~~~l~s~~-~d~~i~iwd~~~  210 (222)
                      |+.|++||++                         +.++++++ .|+.|++||++.
T Consensus       236 Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        236 QRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             CCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence            7899999984                         23566666 599999999983

>KOG0318|consensus

Probab=99.86  E-value=5.7e-20  Score=150.95  Aligned_cols=157  Identities=25%  Similarity=0.426  Sum_probs=130.7

Q ss_pred             CCCCCcccceEEEe-eeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCC
Q psy16881          8 DGPSLFNGTELILR-GSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPL   86 (222)
Q Consensus         8 ~~~~~~~~~~~~~~-~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (222)
                      |--+.|.|--+++. .+-+|+..|+|++|+|||+++|+++.||++.+||=++++.+.++..                   
T Consensus       170 n~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~-------------------  230 (603)
T KOG0318|consen  170 NTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED-------------------  230 (603)
T ss_pred             CeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC-------------------
Confidence            44567888888886 4467789999999999999999999999999999877766554421                   


Q ss_pred             cccceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe----------
Q psy16881         87 CRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL----------  156 (222)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~----------  156 (222)
                                                 -.+|++.|..++|+|++..++|++.|.++||||..+.++++++          
T Consensus       231 ---------------------------~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqq  283 (603)
T KOG0318|consen  231 ---------------------------SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQ  283 (603)
T ss_pred             ---------------------------CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceE
Confidence                                       0258999999999999999999999999999998765554433          


Q ss_pred             ---------------------------------ccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC-------------
Q psy16881        157 ---------------------------------ESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML-------------  190 (222)
Q Consensus       157 ---------------------------------~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~-------------  190 (222)
                                                       .+|...|++++.++++.+|++|+-||.|.-||+.             
T Consensus       284 vG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~  363 (603)
T KOG0318|consen  284 VGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHT  363 (603)
T ss_pred             EEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccccccc
Confidence                                             4788999999999999999999999999999973             


Q ss_pred             ----------CCeEEEeeCCCcEEEEeCCC
Q psy16881        191 ----------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       191 ----------~~~l~s~~~d~~i~iwd~~~  210 (222)
                                ...+++.+.|.++++-++..
T Consensus       364 nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~  393 (603)
T KOG0318|consen  364 NQIKGMAASESGELFTIGWDDTLRVISLKD  393 (603)
T ss_pred             ceEEEEeecCCCcEEEEecCCeEEEEeccc
Confidence                      14588889999999998863

>KOG0645|consensus

Probab=99.86  E-value=5.2e-20  Score=140.35  Aligned_cols=138  Identities=30%  Similarity=0.490  Sum_probs=116.6

Q ss_pred             ccceEEEEEcCC-CCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         27 GSNMRCVRFSPD-TRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        27 ~~~v~~l~~spd-g~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      .+.+-.++|+|- |..||++|.|..|++|+...+......                                .  .    
T Consensus        14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck--------------------------------~--v----   55 (312)
T KOG0645|consen   14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCK--------------------------------T--V----   55 (312)
T ss_pred             CCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEE--------------------------------E--e----
Confidence            678999999998 899999999999999987532111000                                0  0    


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP--SLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKT  183 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~--~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~  183 (222)
                             .-.+|+..|..++|+|.|++|++|+.|.++.||.-.  +++++..++||+.+|.|++|+++|++||++|.|+.
T Consensus        56 -------ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKS  128 (312)
T KOG0645|consen   56 -------LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKS  128 (312)
T ss_pred             -------ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCe
Confidence                   002589999999999999999999999999999654  46889999999999999999999999999999999


Q ss_pred             EEEEeCC--------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        184 VTIWDML--------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       184 i~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      +=+|.+.                          ..+|+|+|.|++|++|+-.
T Consensus       129 VWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~  180 (312)
T KOG0645|consen  129 VWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDE  180 (312)
T ss_pred             EEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeec
Confidence            9999873                          2589999999999999754

>KOG0291|consensus

Probab=99.86  E-value=4.9e-20  Score=156.81  Aligned_cols=180  Identities=25%  Similarity=0.339  Sum_probs=135.5

Q ss_pred             eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee--eeEee
Q psy16881         25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK--QIIPT  102 (222)
Q Consensus        25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  102 (222)
                      .|.+.|..+.|+..|+.|++.|-||+|+.||+...+..+++......+...     +...+ ....+.+...+  .+..|
T Consensus       390 eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfsc-----vavD~-sGelV~AG~~d~F~IfvW  463 (893)
T KOG0291|consen  390 EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSC-----VAVDP-SGELVCAGAQDSFEIFVW  463 (893)
T ss_pred             cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeE-----EEEcC-CCCEEEeeccceEEEEEE
Confidence            348899999999999999999999999999999887777663221111110     11111 11222333222  34445


Q ss_pred             eeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eEEEeccCCccEEEEEEcCCCCEEEEeeCC
Q psy16881        103 RVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT-CIKTLESHTRYVTCCTFSCDDSLLASGSND  181 (222)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~-~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D  181 (222)
                      . ...++....+.+|.++|.+++|+|.+..++|+++|++||+||+-... .+.++. +.+.+..++|+|+|+.|++++-|
T Consensus       464 S-~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTld  541 (893)
T KOG0291|consen  464 S-VQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLD  541 (893)
T ss_pred             E-eecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEec
Confidence            4 24466677889999999999999999999999999999999996543 344443 45668999999999999999999


Q ss_pred             CeEEEEeCC-------------------------------------------CCeEEEeeCCCcEEEEeCCCCc
Q psy16881        182 KTVTIWDML-------------------------------------------ATLLASGSNDKTVTIWDMRGNL  212 (222)
Q Consensus       182 ~~i~lwd~~-------------------------------------------~~~l~s~~~d~~i~iwd~~~~~  212 (222)
                      |.|.+||+.                                           +..+.+||+.+.|.|||+....
T Consensus       542 gqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v  615 (893)
T KOG0291|consen  542 GQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV  615 (893)
T ss_pred             ceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence            999999973                                           3568899999999999998543

>KOG0295|consensus

Probab=99.86  E-value=8.3e-21  Score=149.70  Aligned_cols=183  Identities=26%  Similarity=0.397  Sum_probs=137.8

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      -..|..+-|.|+--++++++.|++|++||..++++....  ++|..+.+.    +.+....+..+.....-.+..|+...
T Consensus       108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L--rGHt~sv~d----i~~~a~Gk~l~tcSsDl~~~LWd~~~  181 (406)
T KOG0295|consen  108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL--RGHTDSVFD----ISFDASGKYLATCSSDLSAKLWDFDT  181 (406)
T ss_pred             ccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh--hccccceeE----EEEecCccEEEecCCccchhheeHHH
Confidence            467888899999999999999999999999998885433  666655332    11111111111111111122222111


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI  186 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l  186 (222)
                      .-.....+.+|...|.++.|-|.|++++|++.|.+|++|++.++.+++++.+|..+|+.+..+.||.++|+++.|.++++
T Consensus       182 ~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~v  261 (406)
T KOG0295|consen  182 FFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRV  261 (406)
T ss_pred             HHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEE
Confidence            11112345578999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCC--------------------------------------CCeEEEeeCCCcEEEEeCC-CCcccc
Q psy16881        187 WDML--------------------------------------ATLLASGSNDKTVTIWDMR-GNLSVD  215 (222)
Q Consensus       187 wd~~--------------------------------------~~~l~s~~~d~~i~iwd~~-~~~~~~  215 (222)
                      |-+.                                      ..++.+++.|++|++||+. +.+++.
T Consensus       262 W~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t  329 (406)
T KOG0295|consen  262 WVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT  329 (406)
T ss_pred             EEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence            9762                                      2489999999999999998 444544

>KOG0274|consensus

Probab=99.86  E-value=6.5e-20  Score=157.48  Aligned_cols=180  Identities=30%  Similarity=0.415  Sum_probs=136.4

Q ss_pred             EeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeee
Q psy16881         20 LRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQI   99 (222)
Q Consensus        20 ~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (222)
                      +.+|   .+.|.+++|..-+.+|++|+.|.++++||..++.+...+.  +|...... ......     ....+.....+
T Consensus       245 l~GH---~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~--gh~stv~~-~~~~~~-----~~~sgs~D~tV  313 (537)
T KOG0274|consen  245 LVGH---FGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ--GHTSSVRC-LTIDPF-----LLVSGSRDNTV  313 (537)
T ss_pred             ccCC---CCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec--CCCceEEE-EEccCc-----eEeeccCCceE
Confidence            4455   8889999998778899999999999999999999887763  33322111 110000     01111233344


Q ss_pred             EeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEee
Q psy16881        100 IPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS  179 (222)
Q Consensus       100 ~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s  179 (222)
                      ..|.+. .+.....+.+|..+|.++.++  +.++++|+.|++|++||+.++++++++.+|+.+|.++.+... ..+++|+
T Consensus       314 kVW~v~-n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs  389 (537)
T KOG0274|consen  314 KVWDVT-NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS  389 (537)
T ss_pred             EEEecc-CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee
Confidence            445432 222234455699999999987  789999999999999999999999999999999999988765 8999999


Q ss_pred             CCCeEEEEeCC----------------------CCeEEEeeCCCcEEEEeCC-CCccc
Q psy16881        180 NDKTVTIWDML----------------------ATLLASGSNDKTVTIWDMR-GNLSV  214 (222)
Q Consensus       180 ~D~~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~-~~~~~  214 (222)
                      .|++|++||+.                      ...|++++.|++|++||.. +++..
T Consensus       390 ~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~  447 (537)
T KOG0274|consen  390 LDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLR  447 (537)
T ss_pred             eccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceee
Confidence            99999999985                      3569999999999999987 44443

>KOG0647|consensus

Probab=99.85  E-value=2.8e-20  Score=143.72  Aligned_cols=136  Identities=26%  Similarity=0.511  Sum_probs=112.9

Q ss_pred             ccceEEEEEcCCCC-eEEEecCCCeEEEEeCCCC-ceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         27 GSNMRCVRFSPDTR-LLATGGDDETVTVWRSDDL-SLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        27 ~~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      ..+|++|+|||... ++++||+||+||+|++... ..+.                                         
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-----------------------------------------   65 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-----------------------------------------   65 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccc-----------------------------------------
Confidence            57799999999544 5669999999999987631 1100                                         


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCC--EEEEeeCCC
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS--LLASGSNDK  182 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~--~l~s~s~D~  182 (222)
                             .....|.++|.+++|+.+|..+++|+.|+.+++||+.+++ +..+..|..+|.++.|-+...  .|+|||+|+
T Consensus        66 -------ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDK  137 (347)
T KOG0647|consen   66 -------KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDK  137 (347)
T ss_pred             -------hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEeccccc
Confidence                   1123488999999999999999999999999999999885 566788999999999976655  899999999


Q ss_pred             eEEEEeCC--------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        183 TVTIWDML--------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       183 ~i~lwd~~--------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      +|+.||.+                    .++++.+..++.|.+|.|+..
T Consensus       138 TlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~  186 (347)
T KOG0647|consen  138 TLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENP  186 (347)
T ss_pred             ceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCC
Confidence            99999986                    357888999999999999743

>KOG0284|consensus

Probab=99.85  E-value=8e-21  Score=151.74  Aligned_cols=178  Identities=23%  Similarity=0.353  Sum_probs=125.1

Q ss_pred             eeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         24 VHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        24 ~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      +.-...|..|+|.|+|++|++|++.|...+|+-...  ..++=.++|... +....   .+........+.....+.-|.
T Consensus        93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f--nFEtilQaHDs~-Vr~m~---ws~~g~wmiSgD~gG~iKyWq  166 (464)
T KOG0284|consen   93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF--NFETILQAHDSP-VRTMK---WSHNGTWMISGDKGGMIKYWQ  166 (464)
T ss_pred             cccccceeeEEEcCCCceeEeecccccEEEecCcee--eHHHHhhhhccc-ceeEE---EccCCCEEEEcCCCceEEecc
Confidence            334567888999999999999999999999976322  111111222211 11111   111111111111111111121


Q ss_pred             eeeeccCCccc-cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCC
Q psy16881        104 VGVYGQDSETV-GRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDK  182 (222)
Q Consensus       104 ~~~~~~~~~~~-~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~  182 (222)
                      .  .......+ ..|+..|++++|+|....|++++.||+|+|||....+....+.+|...|.++.|+|...+|++||.|.
T Consensus       167 p--nmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn  244 (464)
T KOG0284|consen  167 P--NMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN  244 (464)
T ss_pred             c--chhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCc
Confidence            1  01111122 34569999999999989999999999999999988777777899999999999999999999999999


Q ss_pred             eEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        183 TVTIWDML-----------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       183 ~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      .|++||.+                       .++|+++|.|..++++|+|
T Consensus       245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR  294 (464)
T KOG0284|consen  245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR  294 (464)
T ss_pred             eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehh
Confidence            99999975                       4789999999999999999

>KOG0315|consensus

Probab=99.85  E-value=4.7e-20  Score=139.23  Aligned_cols=142  Identities=23%  Similarity=0.391  Sum_probs=103.8

Q ss_pred             CeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeecc-CCccccccC
Q psy16881         40 RLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQ-DSETVGRHT  118 (222)
Q Consensus        40 ~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~  118 (222)
                      -+|+++|.|-+||+|...++.+..+.........+.+      ..+.-+. ..+..-..++..++..... ....+++|+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLe------iTpdk~~-LAaa~~qhvRlyD~~S~np~Pv~t~e~h~   83 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLE------ITPDKKD-LAAAGNQHVRLYDLNSNNPNPVATFEGHT   83 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEE------EcCCcch-hhhccCCeeEEEEccCCCCCceeEEeccC
Confidence            3789999999999999999999888754322221111      1111010 0111112333333333222 456788999


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881        119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      ..|+.+.|..+|+.+++|++||++||||++...+.+.++ |.++|+++..+|+..-|+++..+|.|++||+
T Consensus        84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl  153 (311)
T KOG0315|consen   84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDL  153 (311)
T ss_pred             CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEc
Confidence            999999999999999999999999999999876666554 5689999999999999999999999999998

>KOG0265|consensus

Probab=99.85  E-value=1.4e-19  Score=139.68  Aligned_cols=187  Identities=24%  Similarity=0.334  Sum_probs=142.3

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCccccee-eeeeeeeEeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF-STFVKQIIPTRV  104 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  104 (222)
                      |++.|-.+.|.+|++.|+++|.|.+|+.||+++++.....  ++|....-.    +..+......+. .....+...++.
T Consensus        89 HsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~--k~h~~~vNs----~~p~rrg~~lv~SgsdD~t~kl~D~  162 (338)
T KOG0265|consen   89 HSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKH--KGHTSFVNS----LDPSRRGPQLVCSGSDDGTLKLWDI  162 (338)
T ss_pred             ccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehh--ccccceeee----cCccccCCeEEEecCCCceEEEEee
Confidence            4899999999999999999999999999999999888765  333322111    110111111111 222334444543


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeE
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTV  184 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i  184 (222)
                      ...... ..+ ..+.+++++.|...+..+++|+-|+.|++||++.+..+..+.+|.+.|+.+..+++|..+.+-+-|.++
T Consensus       163 R~k~~~-~t~-~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tv  240 (338)
T KOG0265|consen  163 RKKEAI-KTF-ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTV  240 (338)
T ss_pred             cccchh-hcc-ccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceE
Confidence            222111 112 236789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCC-------------------------------CCeEEEeeCCCcEEEEeCC-CCccccCCCCc
Q psy16881        185 TIWDML-------------------------------ATLLASGSNDKTVTIWDMR-GNLSVDVPLNY  220 (222)
Q Consensus       185 ~lwd~~-------------------------------~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~  220 (222)
                      ++||++                               .+.+.+|+.|+.+++||.. +.+++++|+-+
T Consensus       241 rvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~  308 (338)
T KOG0265|consen  241 RVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY  308 (338)
T ss_pred             EEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc
Confidence            999984                               3568888999999999997 56888888743

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.85  E-value=1.7e-19  Score=163.58  Aligned_cols=175  Identities=24%  Similarity=0.390  Sum_probs=125.6

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCce--------EEeeccCCCcceeeccceecCccCC-cccceeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSL--------IMETNDRGHTQGRIEGWGRVPACPL-CRTRVFSTFV   96 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   96 (222)
                      |.+.|.+++|+|+|++||+|+.|++|+||+......        ....  ..+  ..+...   ..... ....+.+...
T Consensus       482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~--~~v~~l---~~~~~~~~~las~~~D  554 (793)
T PLN00181        482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASR--SKLSGI---CWNSYIKSQVASSNFE  554 (793)
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--ccc--CceeeE---EeccCCCCEEEEEeCC
Confidence            578899999999999999999999999999753210        0000  000  011111   11111 1112223333


Q ss_pred             eeeEeeeeeeeccCCccccccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEc-CCCCE
Q psy16881         97 KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS-CDDSL  174 (222)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s-~~~~~  174 (222)
                      ..+..|+... .+....+.+|...|.+++|+| ++.+|++|+.|++|++||++++.++..+..+ ..|.++.|+ +++.+
T Consensus       555 g~v~lWd~~~-~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~  632 (793)
T PLN00181        555 GVVQVWDVAR-SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRS  632 (793)
T ss_pred             CeEEEEECCC-CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCE
Confidence            4455555321 122234567999999999996 6789999999999999999999888888755 578899995 57999


Q ss_pred             EEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        175 LASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       175 l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      |++|+.|+.|++||+.                       ...+++++.|++|++||++
T Consensus       633 latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        633 LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             EEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCC
Confidence            9999999999999984                       2468999999999999997

>PTZ00420 coronin; Provisional

Probab=99.85  E-value=4e-19  Score=153.25  Aligned_cols=135  Identities=16%  Similarity=0.298  Sum_probs=109.7

Q ss_pred             ccceEEEEEcCCCCe-EEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         27 GSNMRCVRFSPDTRL-LATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        27 ~~~v~~l~~spdg~~-l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      ...|.+++|+|++.. |++++.|++|+|||+.++......                                        
T Consensus       125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i----------------------------------------  164 (568)
T PTZ00420        125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI----------------------------------------  164 (568)
T ss_pred             CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE----------------------------------------
Confidence            788999999999875 578999999999998754322111                                        


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEE-----EEEcCCCCEEEEeeC
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTC-----CTFSCDDSLLASGSN  180 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~-----~~~s~~~~~l~s~s~  180 (222)
                                .|...|.+++|+++|++|++++.|+.|+|||+++++.+.++.+|...+.+     ..|++++.+|++++.
T Consensus       165 ----------~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~  234 (568)
T PTZ00420        165 ----------NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGF  234 (568)
T ss_pred             ----------ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEc
Confidence                      13456899999999999999999999999999999999999999865433     345688899999887


Q ss_pred             CC----eEEEEeCC--------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        181 DK----TVTIWDML--------------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       181 D~----~i~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      |+    +|+|||++                          +.++++|+.|+.|++|++...
T Consensus       235 d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        235 SKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             CCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence            74    79999975                          235788999999999999643

>KOG1446|consensus

Probab=99.85  E-value=3.6e-19  Score=138.23  Aligned_cols=155  Identities=19%  Similarity=0.262  Sum_probs=106.0

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee--eeeeEeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF--VKQIIPTRV  104 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  104 (222)
                      ...|.++.|+++|.+|++++.|.+|+|||..++..+............+. +...+.+     ...++.  ...++-.. 
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~-Fth~~~~-----~i~sStk~d~tIryLs-   86 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLAC-FTHHSNT-----VIHSSTKEDDTIRYLS-   86 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEE-EecCCce-----EEEccCCCCCceEEEE-
Confidence            56799999999999999999999999999999888776644321111110 0000000     001110  01111000 


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeE
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTV  184 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i  184 (222)
                      ....+-.+-+.+|+..|+.|+.+|-+..++|++.|++|++||++..+|...+.....  ..++|+|.|-++|.+.....|
T Consensus        87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~I  164 (311)
T KOG1446|consen   87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELI  164 (311)
T ss_pred             eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeE
Confidence            112223356789999999999999999999999999999999997777655543333  357888888888888877788


Q ss_pred             EEEeCC
Q psy16881        185 TIWDML  190 (222)
Q Consensus       185 ~lwd~~  190 (222)
                      ++||++
T Consensus       165 kLyD~R  170 (311)
T KOG1446|consen  165 KLYDLR  170 (311)
T ss_pred             EEEEec
Confidence            888873

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.84  E-value=6.9e-19  Score=159.67  Aligned_cols=176  Identities=25%  Similarity=0.330  Sum_probs=128.7

Q ss_pred             eccceEEEEEcC-CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         26 IGSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        26 ~~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      |.+.|.+++|+| ++.+|++|+.||+|++||+.++........  +..  +......  .......+.+.....+..|+.
T Consensus       574 H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~--~~~--v~~v~~~--~~~g~~latgs~dg~I~iwD~  647 (793)
T PLN00181        574 HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT--KAN--ICCVQFP--SESGRSLAFGSADHKVYYYDL  647 (793)
T ss_pred             CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec--CCC--eEEEEEe--CCCCCEEEEEeCCCeEEEEEC
Confidence            478899999996 789999999999999999988776654421  111  1111000  011112223333334555553


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC------CceEEEeccCCccEEEEEEcCCCCEEEEe
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS------LTCIKTLESHTRYVTCCTFSCDDSLLASG  178 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~------~~~~~~~~~~~~~V~~~~~s~~~~~l~s~  178 (222)
                      .........+.+|...|.++.|. ++.++++++.|++|+|||++.      .+++..+.+|...+.++.|++++.+|++|
T Consensus       648 ~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasg  726 (793)
T PLN00181        648 RNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATG  726 (793)
T ss_pred             CCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEE
Confidence            22211223456799999999997 678999999999999999974      35678899999999999999999999999


Q ss_pred             eCCCeEEEEeCC------------------------------------CCeEEEeeCCCcEEEEeC
Q psy16881        179 SNDKTVTIWDML------------------------------------ATLLASGSNDKTVTIWDM  208 (222)
Q Consensus       179 s~D~~i~lwd~~------------------------------------~~~l~s~~~d~~i~iwd~  208 (222)
                      +.|+.+++|+..                                    ...+++|+.||.|+|||+
T Consensus       727 s~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        727 SETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             eCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            999999999841                                    236889999999999996

>KOG0282|consensus

Probab=99.84  E-value=1.5e-20  Score=152.91  Aligned_cols=137  Identities=28%  Similarity=0.535  Sum_probs=119.0

Q ss_pred             ccceEEEEEcC-CCCeEEEecCCCeEEEEeCCC-CceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         27 GSNMRCVRFSP-DTRLLATGGDDETVTVWRSDD-LSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        27 ~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      ...|+++.|.| .+.+|++++.|++|+||++.+ ..++                                          
T Consensus       214 ~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l------------------------------------------  251 (503)
T KOG0282|consen  214 TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL------------------------------------------  251 (503)
T ss_pred             ccccchhhhccceeeEEEecCCCceEEEEEEecCccee------------------------------------------
Confidence            56699999999 899999999999999998754 2222                                          


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCC-CEEEEeeCCCe
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD-SLLASGSNDKT  183 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~-~~l~s~s~D~~  183 (222)
                             +.+.+|..+|..++|+.+|..+.|++.|+.|++||+++|+++..+.. ...++|+.|+|++ +.+++|+.|+.
T Consensus       252 -------rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~k  323 (503)
T KOG0282|consen  252 -------RTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKK  323 (503)
T ss_pred             -------hhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCc
Confidence                   23457999999999999999999999999999999999999998865 3468999999998 88889999999


Q ss_pred             EEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCCCcc
Q psy16881        184 VTIWDML-----------------------ATLLASGSNDKTVTIWDMRGNLS  213 (222)
Q Consensus       184 i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~~~~  213 (222)
                      |+.||++                       +..++++++|+.++||+.+....
T Consensus       324 i~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~  376 (503)
T KOG0282|consen  324 IRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP  376 (503)
T ss_pred             EEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc
Confidence            9999996                       45799999999999999886543

>KOG0641|consensus

Probab=99.84  E-value=4.9e-19  Score=132.35  Aligned_cols=195  Identities=25%  Similarity=0.399  Sum_probs=133.2

Q ss_pred             eeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccC--CCcceeeccceecCccCCcccceeee-e-e
Q psy16881         21 RGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDR--GHTQGRIEGWGRVPACPLCRTRVFST-F-V   96 (222)
Q Consensus        21 ~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~   96 (222)
                      .-..||.+.|.|.+|||+|++|++|++|++|++-.+...++...-.+.  ....+.+.....+...........+. . .
T Consensus        83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd  162 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD  162 (350)
T ss_pred             eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence            344678999999999999999999999999998766544332211000  00111111111111110011111111 1 1


Q ss_pred             eeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc-------CCccEEEEEEc
Q psy16881         97 KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES-------HTRYVTCCTFS  169 (222)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~-------~~~~V~~~~~s  169 (222)
                      ..+-..+. ..++....+.+|++.|..+ ++=++.++++|+.|.+||.||++-..++..+..       .++.|.+++.+
T Consensus       163 c~iy~tdc-~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vd  240 (350)
T KOG0641|consen  163 CKIYITDC-GRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVD  240 (350)
T ss_pred             ceEEEeec-CCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEEC
Confidence            12222221 2344556778999999887 444578999999999999999998777776531       24679999999


Q ss_pred             CCCCEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCCCccccCC
Q psy16881        170 CDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRGNLSVDVP  217 (222)
Q Consensus       170 ~~~~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~~~~~~~~  217 (222)
                      |.|++|++|-+|....+||++                       ..++.+++.|.+|++=|+.+.+...+|
T Consensus       241 psgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~  311 (350)
T KOG0641|consen  241 PSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELP  311 (350)
T ss_pred             CCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCc
Confidence            999999999999999999985                       247999999999999999988876665

>KOG0296|consensus

Probab=99.84  E-value=1.1e-19  Score=143.49  Aligned_cols=185  Identities=21%  Similarity=0.262  Sum_probs=128.7

Q ss_pred             eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      .|+.+|.|+.||.||.+||||..+|+|+||+..++....++...   ..-+..   +...+.....+.......+++|.+
T Consensus       104 gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e---~~dieW---l~WHp~a~illAG~~DGsvWmw~i  177 (399)
T KOG0296|consen  104 GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE---VEDIEW---LKWHPRAHILLAGSTDGSVWMWQI  177 (399)
T ss_pred             CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecc---cCceEE---EEecccccEEEeecCCCcEEEEEC
Confidence            34899999999999999999999999999999988776655210   011111   111111122223334445666665


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccC-------------------------
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESH-------------------------  159 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~-------------------------  159 (222)
                      +.. ....++.+|..++++=.|.|+|+.++++..||+|++||+++++.+..+.+.                         
T Consensus       178 p~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~  256 (399)
T KOG0296|consen  178 PSQ-ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV  256 (399)
T ss_pred             CCc-ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence            433 344577889999999999999999999999999999999998776555310                         


Q ss_pred             --------------------------CccEEEEE---EcCCCCEEEEeeCCCeEEEEeCC--------------------
Q psy16881        160 --------------------------TRYVTCCT---FSCDDSLLASGSNDKTVTIWDML--------------------  190 (222)
Q Consensus       160 --------------------------~~~V~~~~---~s~~~~~l~s~s~D~~i~lwd~~--------------------  190 (222)
                                                ...+.|+.   ++..-++.|+|+-||+|.|||+.                    
T Consensus       257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~  336 (399)
T KOG0296|consen  257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWL  336 (399)
T ss_pred             EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEc
Confidence                                      01112222   22334677888899999999873                    


Q ss_pred             -CCeEEEeeCCCcEEEEeCC-CCccccC
Q psy16881        191 -ATLLASGSNDKTVTIWDMR-GNLSVDV  216 (222)
Q Consensus       191 -~~~l~s~~~d~~i~iwd~~-~~~~~~~  216 (222)
                       +.+|++++.|++|+.||.| +.+.+..
T Consensus       337 ~t~~l~t~c~~g~v~~wDaRtG~l~~~y  364 (399)
T KOG0296|consen  337 NTDYLLTACANGKVRQWDARTGQLKFTY  364 (399)
T ss_pred             CcchheeeccCceEEeeeccccceEEEE
Confidence             3578888889999999988 5565544

>KOG0318|consensus

Probab=99.84  E-value=1.6e-18  Score=142.55  Aligned_cols=76  Identities=25%  Similarity=0.417  Sum_probs=72.2

Q ss_pred             ccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec---cCCccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881        114 VGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE---SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       114 ~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~---~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      ++.|..-|.+++|+|+|..|++++.||+|.+||=++++.+.++.   +|+..|.+++|+||+..++|+|.|+++++||+
T Consensus       186 ~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdV  264 (603)
T KOG0318|consen  186 FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDV  264 (603)
T ss_pred             ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEe
Confidence            45688889999999999999999999999999999999999987   89999999999999999999999999999997

>KOG0275|consensus

Probab=99.84  E-value=8.4e-21  Score=148.25  Aligned_cols=140  Identities=30%  Similarity=0.540  Sum_probs=123.7

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      +...|.|+.||.|...||+|+.||+|++|++.++.+++.+.                                       
T Consensus       262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd---------------------------------------  302 (508)
T KOG0275|consen  262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD---------------------------------------  302 (508)
T ss_pred             cccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh---------------------------------------
Confidence            47889999999999999999999999999998776654321                                       


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                               ..|+..|++++|+.++..+.+++.|-++||.-++++++++++.+|+++|+...|.++|..|+++|.||+++
T Consensus       303 ---------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvk  373 (508)
T KOG0275|consen  303 ---------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVK  373 (508)
T ss_pred             ---------hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEE
Confidence                     24888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCC--------------------------CCeEEEeeCCCcEEEEeCCCCcc
Q psy16881        186 IWDML--------------------------ATLLASGSNDKTVTIWDMRGNLS  213 (222)
Q Consensus       186 lwd~~--------------------------~~~l~s~~~d~~i~iwd~~~~~~  213 (222)
                      +|+..                          ...++.+-..++++|-++.+..+
T Consensus       374 vW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV  427 (508)
T KOG0275|consen  374 VWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV  427 (508)
T ss_pred             EecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE
Confidence            99974                          23577777778888888776654

>KOG0276|consensus

Probab=99.84  E-value=1.7e-19  Score=150.88  Aligned_cols=178  Identities=27%  Similarity=0.385  Sum_probs=131.8

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      .-+||...|-.--+.+++|++|..|++|+..+.+.+..+..  |.. -+..   +...+..+....+...-.+..|+...
T Consensus        55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeA--H~D-yIR~---iavHPt~P~vLtsSDDm~iKlW~we~  128 (794)
T KOG0276|consen   55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEA--HSD-YIRS---IAVHPTLPYVLTSSDDMTIKLWDWEN  128 (794)
T ss_pred             ccchhhheeeeccceEEEecCCceEEEEecccceeeEEeec--ccc-ceee---eeecCCCCeEEecCCccEEEEeeccC
Confidence            45677777877778899999999999999999887766532  211 0111   11111112222223332343443211


Q ss_pred             eccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCC--CCEEEEeeCCCe
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCD--DSLLASGSNDKT  183 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~--~~~l~s~s~D~~  183 (222)
                      .-...+.+++|..-|-+++|+|.. +.++|++.|++||+|.+.+..+..++++|...|+|+.+-+.  .++|+||++|.+
T Consensus       129 ~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t  208 (794)
T KOG0276|consen  129 EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT  208 (794)
T ss_pred             ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce
Confidence            111235688999999999999876 69999999999999999999999999999999999999764  479999999999


Q ss_pred             EEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        184 VTIWDML-----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       184 i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +++||..                       -+.++|||+||++|||.-.+
T Consensus       209 iKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  209 IKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT  258 (794)
T ss_pred             EEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence            9999974                       36799999999999998653

>KOG0276|consensus

Probab=99.83  E-value=1.8e-19  Score=150.73  Aligned_cols=158  Identities=26%  Similarity=0.408  Sum_probs=123.0

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc-eEEeeccCCCcceeeccceecCccCCcccceeee-eeeeeEeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS-LIMETNDRGHTQGRIEGWGRVPACPLCRTRVFST-FVKQIIPTR  103 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  103 (222)
                      |+.-|||++.+|+..+++++|+|=+|++|+.+..- +..++  .+|..-.++    +.+.+.....+.+. ....+..|.
T Consensus        96 H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf--eGH~HyVMq----v~fnPkD~ntFaS~sLDrTVKVWs  169 (794)
T KOG0276|consen   96 HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF--EGHEHYVMQ----VAFNPKDPNTFASASLDRTVKVWS  169 (794)
T ss_pred             cccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE--cCcceEEEE----EEecCCCccceeeeeccccEEEEE
Confidence            37889999999999999999999999999988653 33444  455544443    33333333333332 233444554


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCC
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKS--SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSND  181 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~--~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D  181 (222)
                      .+.. ....++++|...|+|+.|-+-|  .+++||+.|.+|||||..+..|+++++||...|..+.|+|.-++|+|||+|
T Consensus       170 lgs~-~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsED  248 (794)
T KOG0276|consen  170 LGSP-HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSED  248 (794)
T ss_pred             cCCC-CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCC
Confidence            3322 2334678999999999998765  499999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCC
Q psy16881        182 KTVTIWDML  190 (222)
Q Consensus       182 ~~i~lwd~~  190 (222)
                      |++++|+..
T Consensus       249 GTvriWhs~  257 (794)
T KOG0276|consen  249 GTVRIWNSK  257 (794)
T ss_pred             ccEEEecCc
Confidence            999999863

>KOG0282|consensus

Probab=99.83  E-value=1.6e-20  Score=152.73  Aligned_cols=122  Identities=20%  Similarity=0.390  Sum_probs=107.5

Q ss_pred             cceE-EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceee
Q psy16881         15 GTEL-ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFS   93 (222)
Q Consensus        15 ~~~~-~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (222)
                      |.++ ++.+|   ...|+.++|+++|+.++++|.|+.|++||.+++++...+.                           
T Consensus       248 ~~~lrtf~gH---~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~---------------------------  297 (503)
T KOG0282|consen  248 RRCLRTFKGH---RKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH---------------------------  297 (503)
T ss_pred             cceehhhhcc---hhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe---------------------------
Confidence            5555 44555   8889999999999999999999999999999887765431                           


Q ss_pred             eeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCC
Q psy16881         94 TFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD  172 (222)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~  172 (222)
                                             ....++|+.|+|++ +.|++|+.|+.|+.||+++++.++++..|-..|..+.|-+.|
T Consensus       298 -----------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g  354 (503)
T KOG0282|consen  298 -----------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEG  354 (503)
T ss_pred             -----------------------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCC
Confidence                                   12346789999998 799999999999999999999999999999999999999999


Q ss_pred             CEEEEeeCCCeEEEEeC
Q psy16881        173 SLLASGSNDKTVTIWDM  189 (222)
Q Consensus       173 ~~l~s~s~D~~i~lwd~  189 (222)
                      +++++.++|+++++|+.
T Consensus       355 ~rFissSDdks~riWe~  371 (503)
T KOG0282|consen  355 RRFISSSDDKSVRIWEN  371 (503)
T ss_pred             ceEeeeccCccEEEEEc
Confidence            99999999999999996

>KOG0273|consensus

Probab=99.83  E-value=2.4e-19  Score=145.61  Aligned_cols=118  Identities=31%  Similarity=0.509  Sum_probs=99.9

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.|.++.|.|.|.+|+++|+|++++||......+...                                         
T Consensus       358 H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~-----------------------------------------  396 (524)
T KOG0273|consen  358 HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHD-----------------------------------------  396 (524)
T ss_pred             ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhh-----------------------------------------
Confidence            467799999999999999999999999998764332221                                         


Q ss_pred             eeccCCccccccCCCEEEEEEcCCC---------CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKS---------SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA  176 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~---------~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~  176 (222)
                              +..|...|..+.|+|.|         ..+++++.|++|++||+..+.++..+..|..+|.+++|+|+|+++|
T Consensus       397 --------l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylA  468 (524)
T KOG0273|consen  397 --------LQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLA  468 (524)
T ss_pred             --------hhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEE
Confidence                    22456666666666543         3799999999999999999999999999999999999999999999


Q ss_pred             EeeCCCeEEEEeCCCC
Q psy16881        177 SGSNDKTVTIWDMLAT  192 (222)
Q Consensus       177 s~s~D~~i~lwd~~~~  192 (222)
                      +|+.||.|.+|+....
T Consensus       469 sGs~dg~V~iws~~~~  484 (524)
T KOG0273|consen  469 SGSLDGCVHIWSTKTG  484 (524)
T ss_pred             ecCCCCeeEeccccch
Confidence            9999999999998643

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.83  E-value=2.2e-18  Score=135.63  Aligned_cols=177  Identities=37%  Similarity=0.573  Sum_probs=129.6

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      .+.|.+++|+|++++|++++.||.|++|++.+........  .+... +..   +.................+..++...
T Consensus         9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~--~~~~~-i~~---~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK--GHTGP-VRD---VAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe--cCCcc-eeE---EEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            6889999999999999999999999999998765443331  11111 100   11111111222222233344443221


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI  186 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l  186 (222)
                       ......+..|...|.++.|+++++++++++.|+.|++||+++++....+..|...|.++.|+|++.++++++.|+.+++
T Consensus        83 -~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i  161 (289)
T cd00200          83 -GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL  161 (289)
T ss_pred             -ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence             1222344567888999999999888998888999999999988888888889999999999999999999988999999


Q ss_pred             EeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        187 WDML-----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       187 wd~~-----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      ||+.                       ...+++++.|+.|++||++.
T Consensus       162 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~  208 (289)
T cd00200         162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST  208 (289)
T ss_pred             EEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCC
Confidence            9974                       23688888899999999973

>KOG0772|consensus

Probab=99.83  E-value=5.7e-20  Score=150.75  Aligned_cols=194  Identities=20%  Similarity=0.312  Sum_probs=125.4

Q ss_pred             eeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEE----eeccCCCcceeeccceecCccCCcccce--eeeeee
Q psy16881         24 VHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIM----ETNDRGHTQGRIEGWGRVPACPLCRTRV--FSTFVK   97 (222)
Q Consensus        24 ~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~   97 (222)
                      .|++-.|+.+++.|.|-+|++||.|.+|++||+.......    .+.+......+...|     +......+  +.....
T Consensus       164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y-----s~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY-----SVTGDQILVVSGSAQA  238 (641)
T ss_pred             cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeee-----cCCCCeEEEEecCcce
Confidence            3447789999999999999999999999999987543221    111111111111000     00000000  000000


Q ss_pred             eeEeeeeeee-----ccC----CccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEE-Ee-----ccCCc
Q psy16881         98 QIIPTRVGVY-----GQD----SETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIK-TL-----ESHTR  161 (222)
Q Consensus        98 ~~~~~~~~~~-----~~~----~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~-~~-----~~~~~  161 (222)
                      .+...+-..+     +..    -....+|...++|.+|+|..+ .|+|++.||++||||++..+... .+     .+..-
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            1111110000     100    113467999999999999875 89999999999999997654322 12     12344


Q ss_pred             cEEEEEEcCCCCEEEEeeCCCeEEEEeCC----------------------------CCeEEEeeCCCcEEEEeCC--CC
Q psy16881        162 YVTCCTFSCDDSLLASGSNDKTVTIWDML----------------------------ATLLASGSNDKTVTIWDMR--GN  211 (222)
Q Consensus       162 ~V~~~~~s~~~~~l~s~s~D~~i~lwd~~----------------------------~~~l~s~~~d~~i~iwd~~--~~  211 (222)
                      .++.++|+++|+.||+|+.||.|.+|+..                            +++|+|-|.|+++++|||+  .+
T Consensus       319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk  398 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK  398 (641)
T ss_pred             CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence            68899999999999999999999999952                            4679999999999999997  33


Q ss_pred             cc-------ccCCCCccC
Q psy16881        212 LS-------VDVPLNYCC  222 (222)
Q Consensus       212 ~~-------~~~~~~~~~  222 (222)
                      ++       ...|.+.||
T Consensus       399 pL~~~tgL~t~~~~tdc~  416 (641)
T KOG0772|consen  399 PLNVRTGLPTPFPGTDCC  416 (641)
T ss_pred             chhhhcCCCccCCCCccc
Confidence            32       456667776

>KOG0300|consensus

Probab=99.83  E-value=4e-20  Score=144.09  Aligned_cols=192  Identities=23%  Similarity=0.362  Sum_probs=133.1

Q ss_pred             CcccceE-EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEe-eccCCCcce-eeccceecCccCCcc
Q psy16881         12 LFNGTEL-ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIME-TNDRGHTQG-RIEGWGRVPACPLCR   88 (222)
Q Consensus        12 ~~~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~   88 (222)
                      |-+|.|+ +..+|   .+.|+++.|+|.+.++++++.|++..||...-.-.+.. ..+..+..+ .....+..     ..
T Consensus       177 ~Esg~CL~~Y~GH---~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~-----~~  248 (481)
T KOG0300|consen  177 LESGACLATYTGH---TGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEH-----NR  248 (481)
T ss_pred             eccccceeeeccc---ccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccc-----cc
Confidence            3456666 44566   88899999999999999999999999997321100000 000111100 00000000     00


Q ss_pred             cceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEE
Q psy16881         89 TRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTF  168 (222)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~  168 (222)
                      ........+.      .........+.+|.+.|.+..|-..|+.++++++|.+..+||.++++.+..+.+|....+-++-
T Consensus       249 d~d~~~~sD~------~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcst  322 (481)
T KOG0300|consen  249 DTDSSEKSDG------HTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCST  322 (481)
T ss_pred             ccccccccCC------ceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcccccc
Confidence            0000000000      0000111235679999999999998999999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCC--CCccccCC
Q psy16881        169 SCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMR--GNLSVDVP  217 (222)
Q Consensus       169 s~~~~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~--~~~~~~~~  217 (222)
                      +|..++++++|.|.+.++||++                       ...++||+.|++|++||++  +.....++
T Consensus       323 HptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR  396 (481)
T KOG0300|consen  323 HPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR  396 (481)
T ss_pred             CCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeee
Confidence            9999999999999999999985                       2468999999999999998  44444443

>KOG0296|consensus

Probab=99.83  E-value=7.1e-19  Score=138.91  Aligned_cols=166  Identities=20%  Similarity=0.355  Sum_probs=126.6

Q ss_pred             eEEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee
Q psy16881         17 ELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV   96 (222)
Q Consensus        17 ~~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (222)
                      +.++.....|.+.|.+++.+|+.++++||+.|....+|+..++....+.  .+|+.....    ..++.+....+.....
T Consensus        54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el--tgHKDSVt~----~~FshdgtlLATGdms  127 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL--TGHKDSVTC----CSFSHDGTLLATGDMS  127 (399)
T ss_pred             ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe--cCCCCceEE----EEEccCceEEEecCCC
Confidence            5556666666999999999999999999999999999999998866655  455554332    2222233333333444


Q ss_pred             eeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEE
Q psy16881         97 KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA  176 (222)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~  176 (222)
                      ..+..+.. ..+.....+......|.-+.|||.+.+|+.|+.||.+=+|.+.++...+.+.+|+.++++=.|.|+|++++
T Consensus       128 G~v~v~~~-stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~  206 (399)
T KOG0296|consen  128 GKVLVFKV-STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRIL  206 (399)
T ss_pred             ccEEEEEc-ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEE
Confidence            44444432 12222223333456788899999999999999999999999999888899999999999999999999999


Q ss_pred             EeeCCCeEEEEeC
Q psy16881        177 SGSNDKTVTIWDM  189 (222)
Q Consensus       177 s~s~D~~i~lwd~  189 (222)
                      ++..||+|++||+
T Consensus       207 tgy~dgti~~Wn~  219 (399)
T KOG0296|consen  207 TGYDDGTIIVWNP  219 (399)
T ss_pred             EEecCceEEEEec
Confidence            9999999999997

>KOG0305|consensus

Probab=99.83  E-value=3.4e-19  Score=149.01  Aligned_cols=155  Identities=24%  Similarity=0.350  Sum_probs=112.8

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCccccee-eeeeeeeEeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF-STFVKQIIPTRVG  105 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  105 (222)
                      ...|.++.|+++|++|++|-.+|.|.|||..+.....++.  ++...++-...   ..   ..... ......+...++.
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~--~~h~~rvg~la---W~---~~~lssGsr~~~I~~~dvR  288 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR--GSHASRVGSLA---WN---SSVLSSGSRDGKILNHDVR  288 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc--CCcCceeEEEe---cc---CceEEEecCCCcEEEEEEe
Confidence            6789999999999999999999999999998776665542  21222211110   00   11111 1112223333322


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCC-CCEEEE--eeCCC
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCD-DSLLAS--GSNDK  182 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~-~~~l~s--~s~D~  182 (222)
                      ........+.+|...|..++|+++++++++|+.|+.+.|||..+.+....+..|...|.+++|+|- ..+||+  |+.|+
T Consensus       289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~  368 (484)
T KOG0305|consen  289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR  368 (484)
T ss_pred             cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence            222222246789999999999999999999999999999999888888899999999999999994 568887  45899


Q ss_pred             eEEEEeC
Q psy16881        183 TVTIWDM  189 (222)
Q Consensus       183 ~i~lwd~  189 (222)
                      +|++||.
T Consensus       369 ~i~fwn~  375 (484)
T KOG0305|consen  369 CIKFWNT  375 (484)
T ss_pred             EEEEEEc
Confidence            9999997

>KOG0643|consensus

Probab=99.83  E-value=4.4e-19  Score=135.19  Aligned_cols=167  Identities=19%  Similarity=0.279  Sum_probs=119.2

Q ss_pred             cccceE-EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccce
Q psy16881         13 FNGTEL-ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRV   91 (222)
Q Consensus        13 ~~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (222)
                      .||+.+ +.++|   .+.|-|++.+.+.++|+||+.|.++++||++++..+..+....    ++..   +.+........
T Consensus        40 ~nGerlGty~GH---tGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~----~Vk~---~~F~~~gn~~l  109 (327)
T KOG0643|consen   40 LNGERLGTYDGH---TGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNS----PVKR---VDFSFGGNLIL  109 (327)
T ss_pred             cCCceeeeecCC---CceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCC----eeEE---EeeccCCcEEE
Confidence            377777 77788   9999999999999999999999999999999999887653211    1110   11111100000


Q ss_pred             eee-----eeeeeEeeeee-----e-eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-EEEeccC
Q psy16881         92 FST-----FVKQIIPTRVG-----V-YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC-IKTLESH  159 (222)
Q Consensus        92 ~~~-----~~~~~~~~~~~-----~-~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~-~~~~~~~  159 (222)
                      +..     ....+..-++.     . ......++.-+.++++.+-|.|.++++++|..||.|.+||+++++. +.....|
T Consensus       110 ~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h  189 (327)
T KOG0643|consen  110 ASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEH  189 (327)
T ss_pred             EEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhh
Confidence            000     00111111111     0 0111223344668899999999999999999999999999999754 5566789


Q ss_pred             CccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881        160 TRYVTCCTFSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       160 ~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      +..|+.++++++..+++++|.|.+.++||+
T Consensus       190 ~~~Ind~q~s~d~T~FiT~s~Dttakl~D~  219 (327)
T KOG0643|consen  190 SSKINDLQFSRDRTYFITGSKDTTAKLVDV  219 (327)
T ss_pred             ccccccccccCCcceEEecccCccceeeec
Confidence            999999999999999999999999999997

>KOG0277|consensus

Probab=99.82  E-value=5.1e-19  Score=133.99  Aligned_cols=136  Identities=26%  Similarity=0.436  Sum_probs=112.9

Q ss_pred             ccceEEEEEcCCC-CeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         27 GSNMRCVRFSPDT-RLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        27 ~~~v~~l~~spdg-~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      ...+..++|++.. ..+++++.||+++|||.....          .                                  
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s----------~----------------------------------   95 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS----------K----------------------------------   95 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCC----------c----------------------------------
Confidence            3557778999764 478899999999999943100          0                                  


Q ss_pred             eeccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCC-CCEEEEeeCCCe
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCD-DSLLASGSNDKT  183 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~-~~~l~s~s~D~~  183 (222)
                          ....++.|+..|.++.|++.. +.++++++|++||+|+.+..+.+.++.+|...|....|+|. .+.++++|.|++
T Consensus        96 ----Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~  171 (311)
T KOG0277|consen   96 ----PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT  171 (311)
T ss_pred             ----chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence                112345689999999998765 47888899999999999988889999999999999999995 678999999999


Q ss_pred             EEEEeCC------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        184 VTIWDML------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       184 i~lwd~~------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +++||++                        ..++++|+.|+.|+.||+|.
T Consensus       172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~  222 (311)
T KOG0277|consen  172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN  222 (311)
T ss_pred             EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence            9999985                        35799999999999999984

>KOG0973|consensus

Probab=99.82  E-value=2.5e-19  Score=157.51  Aligned_cols=133  Identities=28%  Similarity=0.480  Sum_probs=106.0

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.|.|++|+|||++||+||+|+.|.||.....-.-..+... ....                        ....|.  
T Consensus        68 h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~-g~~~------------------------~vE~wk--  120 (942)
T KOG0973|consen   68 HDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGST-GGAK------------------------NVESWK--  120 (942)
T ss_pred             ccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccccccc-cccc------------------------ccceee--
Confidence            4899999999999999999999999999986531000000000 0000                        011111  


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                          ....+.+|...|..+.|+|++.++++++.|++|.|||.++++++..+.+|...|..++|+|-|++||+-+.|++|+
T Consensus       121 ----~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtik  196 (942)
T KOG0973|consen  121 ----VVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLK  196 (942)
T ss_pred             ----EEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEE
Confidence                1123457999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeC
Q psy16881        186 IWDM  189 (222)
Q Consensus       186 lwd~  189 (222)
                      +|.+
T Consensus       197 vwrt  200 (942)
T KOG0973|consen  197 VWRT  200 (942)
T ss_pred             EEEc
Confidence            9984

>KOG2096|consensus

Probab=99.82  E-value=9.5e-19  Score=136.38  Aligned_cols=185  Identities=21%  Similarity=0.336  Sum_probs=123.5

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee-ee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF-VK   97 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   97 (222)
                      .|.+|   +..|++++|+.||+.|+|.+.|++|++|++++......-...  .......-..+.+.++|+....+-. .+
T Consensus        81 ~LKgH---~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R--~nve~dhpT~V~FapDc~s~vv~~~~g~  155 (420)
T KOG2096|consen   81 VLKGH---KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIR--QNVEYDHPTRVVFAPDCKSVVVSVKRGN  155 (420)
T ss_pred             hhhcc---CCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhh--ccccCCCceEEEECCCcceEEEEEccCC
Confidence            45566   899999999999999999999999999999875422110000  0000000111223344443322211 11


Q ss_pred             eeEeeee-----eeeccCC------ccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEE
Q psy16881         98 QIIPTRV-----GVYGQDS------ETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCC  166 (222)
Q Consensus        98 ~~~~~~~-----~~~~~~~------~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~  166 (222)
                      .+.....     +......      .--+.|+..|-.+-.-..++++.+++.|..|.+||++ ++.+..+......-+..
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a  234 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA  234 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence            1211110     0000000      0112456666666665667899999999999999999 88888887777677788


Q ss_pred             EEcCCCCEEEEeeCCCeEEEEeCC-------------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        167 TFSCDDSLLASGSNDKTVTIWDML-------------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       167 ~~s~~~~~l~s~s~D~~i~lwd~~-------------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      +.||+|+.|++++..-.+++|++.                               ...+++.|.||+++|||..
T Consensus       235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            999999999999999999999972                               3579999999999999975

>KOG0292|consensus

Probab=99.82  E-value=1.3e-19  Score=156.73  Aligned_cols=135  Identities=30%  Similarity=0.559  Sum_probs=121.9

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ++.|..++|+|....++++-..|.|++||..=+.++                                            
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli--------------------------------------------   44 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI--------------------------------------------   44 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhhhHH--------------------------------------------
Confidence            678899999999999999999999999997522222                                            


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI  186 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l  186 (222)
                           ..|..|.++|..+.|||.+..|+||+.|-+|++|++++.+|+.++.+|-++|+.+.|++.-+.|+|+|+|.+|++
T Consensus        45 -----~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrI  119 (1202)
T KOG0292|consen   45 -----DRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRI  119 (1202)
T ss_pred             -----hhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEE
Confidence                 124469999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        187 WDML-----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       187 wd~~-----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      |+..                       ..+++|+|-|-+||+||+++
T Consensus       120 WNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisG  166 (1202)
T KOG0292|consen  120 WNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISG  166 (1202)
T ss_pred             EeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecc
Confidence            9974                       25799999999999999875

>KOG0313|consensus

Probab=99.82  E-value=5.1e-19  Score=140.34  Aligned_cols=165  Identities=26%  Similarity=0.402  Sum_probs=120.7

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |...|-+++..++|.++++||+|..|.||+.... ...+........   .          -+.... . .        .
T Consensus       192 Hk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~-~~~~~E~~s~~r---r----------k~~~~~-~-~--------~  247 (423)
T KOG0313|consen  192 HKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETD-EEDELESSSNRR---R----------KKQKRE-K-E--------G  247 (423)
T ss_pred             cccceeEEEecCCCCeEEeecccceeeecccCCC-ccccccccchhh---h----------hhhhhh-h-c--------c
Confidence            3788999999999999999999999999983321 111100000000   0          000000 0 0        0


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                      ........+++|+.+|..+.|++ ...++++++|-+|+.||+.++.+..++.+ .....|+.+++..++|++|+.|+.|+
T Consensus       248 ~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  248 GTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIR  325 (423)
T ss_pred             cccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCcee
Confidence            00111234678999999999988 67899999999999999999998888876 45689999999999999999999999


Q ss_pred             EEeCC---------------------------CCeEEEeeCCCcEEEEeCC-CC-ccccC
Q psy16881        186 IWDML---------------------------ATLLASGSNDKTVTIWDMR-GN-LSVDV  216 (222)
Q Consensus       186 lwd~~---------------------------~~~l~s~~~d~~i~iwd~~-~~-~~~~~  216 (222)
                      +||.+                           ..+|+|++.|+++++||+| .+ +.+++
T Consensus       326 l~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI  385 (423)
T KOG0313|consen  326 LWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI  385 (423)
T ss_pred             ecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee
Confidence            99985                           2469999999999999998 33 44443

>KOG0293|consensus

Probab=99.82  E-value=4.7e-19  Score=142.03  Aligned_cols=118  Identities=22%  Similarity=0.380  Sum_probs=98.8

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |...|=-+.||++|++||+++.|.+..+|.+..-....                                          
T Consensus       223 htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~k------------------------------------------  260 (519)
T KOG0293|consen  223 HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFK------------------------------------------  260 (519)
T ss_pred             CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCccee------------------------------------------
Confidence            57889999999999999999999999999864211100                                          


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc-CCccEEEEEEcCCCCEEEEeeCCCeE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES-HTRYVTCCTFSCDDSLLASGSNDKTV  184 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~-~~~~V~~~~~s~~~~~l~s~s~D~~i  184 (222)
                          ....+.+|..+|..+.|+|+.+++++++.|-.+++||..++.+...+.. +...+.+++|.|||..+++|+.|++|
T Consensus       261 ----l~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i  336 (519)
T KOG0293|consen  261 ----LKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTI  336 (519)
T ss_pred             ----eeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcE
Confidence                0123457999999999999999999999999999999999988766532 35678999999999999999999999


Q ss_pred             EEEeC
Q psy16881        185 TIWDM  189 (222)
Q Consensus       185 ~lwd~  189 (222)
                      .-||+
T Consensus       337 ~~wdl  341 (519)
T KOG0293|consen  337 IMWDL  341 (519)
T ss_pred             EEecC
Confidence            99986

>KOG0294|consensus

Probab=99.81  E-value=7.5e-19  Score=136.57  Aligned_cols=113  Identities=23%  Similarity=0.387  Sum_probs=98.1

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.+.+|+.  +|.++|+||.|-+|+|||+.+.....                                          
T Consensus        42 H~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg------------------------------------------   77 (362)
T KOG0294|consen   42 HAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLG------------------------------------------   77 (362)
T ss_pred             cccceeEEEe--cceeEeccCCCCcEEEEeccchhhhc------------------------------------------
Confidence            4677999998  68999999999999999986421110                                          


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSS--LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKT  183 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~  183 (222)
                             .+-.|++.|+++.|.+.-.  .|++|+.||.|.+|+....+++..+++|...|+.++.+|.+++-++.+.|+.
T Consensus        78 -------~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~  150 (362)
T KOG0294|consen   78 -------ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQV  150 (362)
T ss_pred             -------ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCce
Confidence                   1124899999999987653  8999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeC
Q psy16881        184 VTIWDM  189 (222)
Q Consensus       184 i~lwd~  189 (222)
                      +++||+
T Consensus       151 lr~WNL  156 (362)
T KOG0294|consen  151 LRTWNL  156 (362)
T ss_pred             eeeehh
Confidence            999997

>KOG0285|consensus

Probab=99.81  E-value=2e-18  Score=136.39  Aligned_cols=180  Identities=25%  Similarity=0.391  Sum_probs=142.1

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ   98 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (222)
                      ++-+|   .+.|+.+++|+-..||++++.|++|+.||++....++.+  .+|..+...    +...+.....+.....+.
T Consensus       188 tltGh---i~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Y--hGHlS~V~~----L~lhPTldvl~t~grDst  258 (460)
T KOG0285|consen  188 TLTGH---IETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHY--HGHLSGVYC----LDLHPTLDVLVTGGRDST  258 (460)
T ss_pred             eecch---hheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHh--ccccceeEE----EeccccceeEEecCCcce
Confidence            44555   788999999999999999999999999999988877765  566555433    122211222233334445


Q ss_pred             eEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEe
Q psy16881         99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG  178 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~  178 (222)
                      ++.|++.. .....++.+|+.+|..+.+.|.+..+++|+.|++|++||++.++.+..+..|...|++++.+|....+|++
T Consensus       259 ~RvWDiRt-r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASa  337 (460)
T KOG0285|consen  259 IRVWDIRT-RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASA  337 (460)
T ss_pred             EEEeeecc-cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhcc
Confidence            66666432 22335678899999999999988899999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCC----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        179 SNDKTVTIWDML----------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       179 s~D~~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      +.| .|+-|++.                      ..++++|++++.|-+||.+
T Consensus       338 s~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwk  389 (460)
T KOG0285|consen  338 SPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWK  389 (460)
T ss_pred             CCc-cceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecC
Confidence            999 58899873                      3468889999999999987

>KOG0281|consensus

Probab=99.81  E-value=7e-20  Score=144.16  Aligned_cols=128  Identities=30%  Similarity=0.694  Sum_probs=111.6

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      .+.|+.+.|  +.++++++|.|.+|++|+..+.+.+.+                                          
T Consensus       320 rAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRt------------------------------------------  355 (499)
T KOG0281|consen  320 RAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRT------------------------------------------  355 (499)
T ss_pred             hhheeeecc--ccceEEEecCCceEEEEeccceeeehh------------------------------------------
Confidence            788999888  567999999999999999876554432                                          


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI  186 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l  186 (222)
                             +.+|+-.|.|+++  .++.+++|+.|++|++||+..++++.-++||+..|+|+.|+  ...|++|.-||+|++
T Consensus       356 -------l~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikv  424 (499)
T KOG0281|consen  356 -------LNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKV  424 (499)
T ss_pred             -------hhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEE
Confidence                   3468888988887  47899999999999999999999999999999999999996  678999999999999


Q ss_pred             EeCCC------------------------------CeEEEeeCCCcEEEEeCC
Q psy16881        187 WDMLA------------------------------TLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       187 wd~~~------------------------------~~l~s~~~d~~i~iwd~~  209 (222)
                      ||+.+                              -.+++++.|.+|-|||+-
T Consensus       425 Wdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  425 WDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFL  477 (499)
T ss_pred             EecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcC
Confidence            99841                              248899999999999986

>KOG0640|consensus

Probab=99.81  E-value=4.2e-19  Score=137.95  Aligned_cols=142  Identities=25%  Similarity=0.472  Sum_probs=118.4

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ   98 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (222)
                      +|.+|   .+.|+++.|.|...+|++|+.|++|++||+.+.....-+                                 
T Consensus       167 TlYDH---~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~---------------------------------  210 (430)
T KOG0640|consen  167 TLYDH---VDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAF---------------------------------  210 (430)
T ss_pred             ehhhc---cCcccceeecchhheEEeccCCCeEEEEecccHHHHHHH---------------------------------
Confidence            44455   788999999999999999999999999998753322110                                 


Q ss_pred             eEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe---ccCCccEEEEEEcCCCCEE
Q psy16881         99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL---ESHTRYVTCCTFSCDDSLL  175 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~---~~~~~~V~~~~~s~~~~~l  175 (222)
                                   ..+ ....+|.+++|+|.|.+++.|..-.++++||+++.+|...-   .+|+..|+++.+++.+++-
T Consensus       211 -------------K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lY  276 (430)
T KOG0640|consen  211 -------------KVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLY  276 (430)
T ss_pred             -------------HHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEE
Confidence                         001 12567899999999999999999999999999998886543   4688899999999999999


Q ss_pred             EEeeCCCeEEEEeCC-------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        176 ASGSNDKTVTIWDML-------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       176 ~s~s~D~~i~lwd~~-------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      ++||.||.|++||=.                         +.++.++|.|..+++|++.+
T Consensus       277 vTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t  336 (430)
T KOG0640|consen  277 VTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST  336 (430)
T ss_pred             EEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence            999999999999942                         46899999999999999973

>KOG0264|consensus

Probab=99.81  E-value=3e-18  Score=138.51  Aligned_cols=189  Identities=29%  Similarity=0.406  Sum_probs=129.5

Q ss_pred             EEEeeeeeeccceEEEEEcCCCC-eEEEecCCCeEEEEeCCCCceE-----EeeccCCCcceeeccceecCccCCcccce
Q psy16881         18 LILRGSVHIGSNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSLI-----METNDRGHTQGRIEGWGRVPACPLCRTRV   91 (222)
Q Consensus        18 ~~~~~~~~~~~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (222)
                      ++|.+|   ...=..|+|++... .|++|+.|++|.+||+......     ...-..+|.... .   .+.+.......+
T Consensus       171 l~L~gH---~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~V-e---DV~~h~~h~~lF  243 (422)
T KOG0264|consen  171 LRLKGH---EKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVV-E---DVAWHPLHEDLF  243 (422)
T ss_pred             eEEEee---cccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcce-e---hhhccccchhhh
Confidence            456666   22234478988765 6899999999999998753321     000011121111 1   122222222222


Q ss_pred             eeeee-eeeEeeeeee-eccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-ceEEEeccCCccEEEEE
Q psy16881         92 FSTFV-KQIIPTRVGV-YGQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSL-TCIKTLESHTRYVTCCT  167 (222)
Q Consensus        92 ~~~~~-~~~~~~~~~~-~~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~V~~~~  167 (222)
                      .+... .....++... .........+|..+|+|++|+|.+ ..||||+.|++|++||+++. +++.++.+|...|..|.
T Consensus       244 ~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~  323 (422)
T KOG0264|consen  244 GSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVE  323 (422)
T ss_pred             eeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEE
Confidence            22222 2344455443 222334556799999999999876 58999999999999999874 56889999999999999


Q ss_pred             EcCC-CCEEEEeeCCCeEEEEeCC--------------------------------------CCeEEEeeCCCcEEEEeC
Q psy16881        168 FSCD-DSLLASGSNDKTVTIWDML--------------------------------------ATLLASGSNDKTVTIWDM  208 (222)
Q Consensus       168 ~s~~-~~~l~s~s~D~~i~lwd~~--------------------------------------~~~l~s~~~d~~i~iwd~  208 (222)
                      |||+ ...||+++.|+.+.+||+.                                      .-.++|+++|+.++||++
T Consensus       324 WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~  403 (422)
T KOG0264|consen  324 WSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM  403 (422)
T ss_pred             eCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence            9996 5788899999999999984                                      125889999999999999


Q ss_pred             CCCcc
Q psy16881        209 RGNLS  213 (222)
Q Consensus       209 ~~~~~  213 (222)
                      ...+.
T Consensus       404 s~~i~  408 (422)
T KOG0264|consen  404 AENIY  408 (422)
T ss_pred             ccccc
Confidence            86544

>KOG0264|consensus

Probab=99.81  E-value=5.8e-19  Score=142.55  Aligned_cols=181  Identities=23%  Similarity=0.386  Sum_probs=129.5

Q ss_pred             eccceEEEEEcCCC-CeEEEecCCCeEEEEeCCCCceEEee--------ccCCCcceeeccceecCccCCcccceeeeee
Q psy16881         26 IGSNMRCVRFSPDT-RLLATGGDDETVTVWRSDDLSLIMET--------NDRGHTQGRIEGWGRVPACPLCRTRVFSTFV   96 (222)
Q Consensus        26 ~~~~v~~l~~spdg-~~l~tgs~Dg~i~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (222)
                      |.+.|..+++-|+. .+||+.+..+.|.|||..+.......        .-.+|..   .+++...........+.+...
T Consensus       123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~---eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK---EGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc---cccccccccccceeEeeccCC
Confidence            45668777887765 46788899999999998754332211        1112222   122211111112222333344


Q ss_pred             eeeEeeeeeeeccC------CccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCC--CCceEEEeccCCccEEEEE
Q psy16881         97 KQIIPTRVGVYGQD------SETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVP--SLTCIKTLESHTRYVTCCT  167 (222)
Q Consensus        97 ~~~~~~~~~~~~~~------~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~--~~~~~~~~~~~~~~V~~~~  167 (222)
                      ..++.|++.....+      ...+.+|...|+.++|++.. +.|++++.|+.+.|||++  +.+......+|...|.|++
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~  279 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA  279 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence            45666765443332      23467899999999999875 589999999999999999  5666778889999999999


Q ss_pred             EcC-CCCEEEEeeCCCeEEEEeCC-------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        168 FSC-DDSLLASGSNDKTVTIWDML-------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       168 ~s~-~~~~l~s~s~D~~i~lwd~~-------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      |+| ++.+|||||.|++|.|||++                         .+.|||++.|+.+.+||++
T Consensus       280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             eCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence            998 46788999999999999985                         3579999999999999997

>KOG0277|consensus

Probab=99.81  E-value=9.8e-19  Score=132.45  Aligned_cols=177  Identities=25%  Similarity=0.328  Sum_probs=131.8

Q ss_pred             eeccceEEEEEcCC-CCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceee-eeeeeeEee
Q psy16881         25 HIGSNMRCVRFSPD-TRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFS-TFVKQIIPT  102 (222)
Q Consensus        25 ~~~~~v~~l~~spd-g~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  102 (222)
                      +|...|.++.+++. ++.++++|+|++|++|+......+.++  .+|......    ..+.+.....+.+ ........|
T Consensus       102 EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf--~gh~~~Iy~----a~~sp~~~nlfas~Sgd~~l~lw  175 (311)
T KOG0277|consen  102 EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF--NGHNSCIYQ----AAFSPHIPNLFASASGDGTLRLW  175 (311)
T ss_pred             hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee--cCCccEEEE----EecCCCCCCeEEEccCCceEEEE
Confidence            35677999999875 456788899999999999887777775  333332222    1222222222222 222334556


Q ss_pred             eeeeeccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-ceEEEeccCCccEEEEEEcCC-CCEEEEee
Q psy16881        103 RVGVYGQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSL-TCIKTLESHTRYVTCCTFSCD-DSLLASGS  179 (222)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~V~~~~~s~~-~~~l~s~s  179 (222)
                      ++...+ ....++.|...|.+..|+..+ ++++||+.|+.||.||++.- ..+.++.+|.-.|+.+.|||. ..+||+++
T Consensus       176 dvr~~g-k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSas  254 (311)
T KOG0277|consen  176 DVRSPG-KFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASAS  254 (311)
T ss_pred             EecCCC-ceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhcc
Confidence            544332 233477899999999998765 68999999999999999864 457888999999999999996 46889999


Q ss_pred             CCCeEEEEeCC-------------------------CCeEEEeeCCCcEEEEeC
Q psy16881        180 NDKTVTIWDML-------------------------ATLLASGSNDKTVTIWDM  208 (222)
Q Consensus       180 ~D~~i~lwd~~-------------------------~~~l~s~~~d~~i~iwd~  208 (222)
                      =|-++++||..                         ..++|+++-|+.++||+.
T Consensus       255 YDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  255 YDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            99999999973                         467999999999999985

>KOG0640|consensus

Probab=99.81  E-value=7.8e-19  Score=136.48  Aligned_cols=153  Identities=25%  Similarity=0.392  Sum_probs=115.6

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.+++-+|+|||.++|+||.|-.|+|.|++..-.....  ......                     .. +       
T Consensus       111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~--~em~~~---------------------~~-q-------  159 (430)
T KOG0640|consen  111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKP--KEMISG---------------------DT-Q-------  159 (430)
T ss_pred             cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcch--hhhccC---------------------Cc-c-------
Confidence            6889999999999999999999999999998743221100  000000                     00 0       


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ceEEEeccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL--TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKT  183 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~  183 (222)
                      ..-.-.+.+-.|...|+++.|+|....|++|+.|++||++|+..-  +...+.-....+|++++|+|.|.+|+.|.+-.+
T Consensus       160 a~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~  239 (430)
T KOG0640|consen  160 ARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPT  239 (430)
T ss_pred             cCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCc
Confidence            000011244569999999999999999999999999999998632  222233345678999999999999999999999


Q ss_pred             EEEEeCC--------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        184 VTIWDML--------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       184 i~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      +++||+.                          +.+.++++.||-|+|||--
T Consensus       240 ~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGV  291 (430)
T KOG0640|consen  240 LRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGV  291 (430)
T ss_pred             eeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccc
Confidence            9999984                          3578999999999999953

>KOG0302|consensus

Probab=99.80  E-value=1.5e-18  Score=137.65  Aligned_cols=187  Identities=25%  Similarity=0.398  Sum_probs=121.5

Q ss_pred             eeeccceEEEEEcCC--CCeEEEecCCCeEEEEeCCCCceE-EeeccCCC--ccee--------eccceecCccCCc-cc
Q psy16881         24 VHIGSNMRCVRFSPD--TRLLATGGDDETVTVWRSDDLSLI-METNDRGH--TQGR--------IEGWGRVPACPLC-RT   89 (222)
Q Consensus        24 ~~~~~~v~~l~~spd--g~~l~tgs~Dg~i~iwd~~~~~~~-~~~~~~~~--~~~~--------~~~~~~~~~~~~~-~~   89 (222)
                      +|.+. ++.++.++-  ..+.|+-+..|.|+||++...... .+.....+  ...+        ..+++ +..++.. ..
T Consensus       149 ~h~g~-~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~-LdWSp~~~g~  226 (440)
T KOG0302|consen  149 PHYGG-INRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYG-LDWSPIKTGR  226 (440)
T ss_pred             ccccc-cceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcccee-eecccccccc
Confidence            44443 555555554  457788888999999997643211 11000000  0000        11222 1111110 00


Q ss_pred             ceeeeeeeeeEeeee--eeeccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCc--eEEEeccCCccEE
Q psy16881         90 RVFSTFVKQIIPTRV--GVYGQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLT--CIKTLESHTRYVT  164 (222)
Q Consensus        90 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~~~~V~  164 (222)
                      .....+...+..|..  +.|......+.+|+..|..++|+|.. .+|+|++.||+|+|||++.++  .....++|...|+
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN  306 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN  306 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence            111122233333322  33444445667799999999999976 599999999999999999872  2233488999999


Q ss_pred             EEEEcCCCCEEEEeeCCCeEEEEeCC---------------------------CCeEEEeeCCCcEEEEeCCCCc
Q psy16881        165 CCTFSCDDSLLASGSNDKTVTIWDML---------------------------ATLLASGSNDKTVTIWDMRGNL  212 (222)
Q Consensus       165 ~~~~s~~~~~l~s~s~D~~i~lwd~~---------------------------~~~l~s~~~d~~i~iwd~~~~~  212 (222)
                      -++|+.+-.+||+|+.||+++|||++                           ...++++|.|+.|.|||++-+.
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA  381 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence            99999998899999999999999985                           2468899999999999997443

>KOG0283|consensus

Probab=99.80  E-value=1e-18  Score=150.19  Aligned_cols=142  Identities=23%  Similarity=0.375  Sum_probs=116.4

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ   98 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (222)
                      ++.+|   .+.|..|.||.+ .+|+++|+|.|||||++....++..+                                 
T Consensus       364 ef~GH---t~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F---------------------------------  406 (712)
T KOG0283|consen  364 EFKGH---TADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF---------------------------------  406 (712)
T ss_pred             hhhcc---chhheecccccC-CeeEeccccccEEeecCCCcceeeEE---------------------------------
Confidence            44555   899999999965 68999999999999998866555433                                 


Q ss_pred             eEeeeeeeeccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881         99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s  177 (222)
                                       .|..-|+|++|+|.+ ++|++|+.|++||||++.+.+.+. +..-...|++++|.|+|+..+.
T Consensus       407 -----------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk~avI  468 (712)
T KOG0283|consen  407 -----------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGKGAVI  468 (712)
T ss_pred             -----------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccCCceEEE
Confidence                             388889999999865 799999999999999999776554 3333478999999999999999


Q ss_pred             eeCCCeEEEEeCC--------------------------------CCeEEEeeCCCcEEEEeCC-CCcccc
Q psy16881        178 GSNDKTVTIWDML--------------------------------ATLLASGSNDKTVTIWDMR-GNLSVD  215 (222)
Q Consensus       178 ~s~D~~i~lwd~~--------------------------------~~~l~s~~~d~~i~iwd~~-~~~~~~  215 (222)
                      |+-+|.+++|+..                                ...+.+.+.|..|||+|++ .+++.+
T Consensus       469 Gt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~K  539 (712)
T KOG0283|consen  469 GTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHK  539 (712)
T ss_pred             EEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhh
Confidence            9999999999973                                1246777899999999996 445443

>KOG0306|consensus

Probab=99.80  E-value=2e-18  Score=147.09  Aligned_cols=140  Identities=30%  Similarity=0.516  Sum_probs=122.8

Q ss_pred             eeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         24 VHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        24 ~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      ..+.+.|.|+++||||++|+++--|++|++|-+++.....                                        
T Consensus       505 Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFfl----------------------------------------  544 (888)
T KOG0306|consen  505 LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFL----------------------------------------  544 (888)
T ss_pred             EeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeee----------------------------------------
Confidence            3457889999999999999999999999999776432211                                        


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKT  183 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~  183 (222)
                               .+-+|+-+|.|+.++|+++.++||+.|++|+||=+.=|.|-+++.+|.+.|+++.|-|....+.+++.|+.
T Consensus       545 ---------sLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~k  615 (888)
T KOG0306|consen  545 ---------SLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGK  615 (888)
T ss_pred             ---------eecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcce
Confidence                     12369999999999999999999999999999998888999999999999999999999999999999999


Q ss_pred             EEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCCCc
Q psy16881        184 VTIWDML-----------------------ATLLASGSNDKTVTIWDMRGNL  212 (222)
Q Consensus       184 i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~~~  212 (222)
                      |+.||-.                       +.+++|+|.|+.|++|....+.
T Consensus       616 vKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~  667 (888)
T KOG0306|consen  616 VKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI  667 (888)
T ss_pred             EEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence            9999842                       4689999999999999876543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.79  E-value=4.3e-17  Score=128.27  Aligned_cols=173  Identities=38%  Similarity=0.549  Sum_probs=126.3

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee-eeeeEeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF-VKQIIPTRVG  105 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  105 (222)
                      ...|.++.|+|+++++++++.||.|++|++.+........  .+.. .+...   ...+.. ....... ...+..++..
T Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~-~i~~~---~~~~~~-~~l~~~~~~~~i~i~d~~  165 (289)
T cd00200          93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR--GHTD-WVNSV---AFSPDG-TFVASSSQDGTIKLWDLR  165 (289)
T ss_pred             CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec--cCCC-cEEEE---EEcCcC-CEEEEEcCCCcEEEEEcc
Confidence            5679999999999999998889999999998766555442  1111 11111   111111 1111111 2233333321


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                       .......+..|...|.++.|+++++.+++++.|+.|++||+++++.+..+..|...+.++.|++++.++++++.|+.++
T Consensus       166 -~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~  244 (289)
T cd00200         166 -TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIR  244 (289)
T ss_pred             -ccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEE
Confidence             1122234456778899999999999999999999999999998888888888888999999999999999888899999


Q ss_pred             EEeCC-----------------------CCeEEEeeCCCcEEEEe
Q psy16881        186 IWDML-----------------------ATLLASGSNDKTVTIWD  207 (222)
Q Consensus       186 lwd~~-----------------------~~~l~s~~~d~~i~iwd  207 (222)
                      +||+.                       ...+++++.|+.|++|+
T Consensus       245 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         245 VWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            99974                       25789999999999996

>KOG0289|consensus

Probab=99.79  E-value=7.7e-18  Score=135.78  Aligned_cols=136  Identities=24%  Similarity=0.349  Sum_probs=116.3

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.|+.+...|.|+||+++++||+..+.|+.++........                                      
T Consensus       302 h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~--------------------------------------  343 (506)
T KOG0289|consen  302 HEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD--------------------------------------  343 (506)
T ss_pred             ccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee--------------------------------------
Confidence            467899999999999999999999999999887655432210                                      


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                               +...-.+++++|||+|..|.+|..|+.|+|||++++..+..|.+|+.+|.+++|+-+|.+|+++++|+.|+
T Consensus       344 ---------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~  414 (506)
T KOG0289|consen  344 ---------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVK  414 (506)
T ss_pred             ---------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEE
Confidence                     00123478899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCC------------------------CCeEEEeeCCCcEEEEeC
Q psy16881        186 IWDML------------------------ATLLASGSNDKTVTIWDM  208 (222)
Q Consensus       186 lwd~~------------------------~~~l~s~~~d~~i~iwd~  208 (222)
                      +||++                        +.+|+.++.|=.|++++-
T Consensus       415 lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k  461 (506)
T KOG0289|consen  415 LWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKK  461 (506)
T ss_pred             EEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEec
Confidence            99985                        467888888877777763

>KOG0267|consensus

Probab=99.78  E-value=2.3e-19  Score=152.10  Aligned_cols=140  Identities=38%  Similarity=0.668  Sum_probs=123.1

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ   98 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (222)
                      .+.+|   .+.|.+|.|+++..+|++|+.+|+|++||++....+.                                   
T Consensus        65 S~~~h---espIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr-----------------------------------  106 (825)
T KOG0267|consen   65 SLTGH---ESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR-----------------------------------  106 (825)
T ss_pred             eeecc---CCcceeeecCcchhhhcccccCCceeeeehhhhhhhh-----------------------------------
Confidence            34555   7889999999999999999999999999997432221                                   


Q ss_pred             eEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEe
Q psy16881         99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG  178 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~  178 (222)
                                    .+-+|...+..++|+|.+.++++|+.|..+++||++...|...+.+|...|.++.|+|+|++++++
T Consensus       107 --------------tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g  172 (825)
T KOG0267|consen  107 --------------TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASG  172 (825)
T ss_pred             --------------hhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeecc
Confidence                          234688889999999999999999999999999999888999999999999999999999999999


Q ss_pred             eCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        179 SNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       179 s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      ++|.++++||+.                       .-++++||.|+++++||+++
T Consensus       173 ~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet  227 (825)
T KOG0267|consen  173 GEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET  227 (825)
T ss_pred             CCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccce
Confidence            999999999983                       12689999999999999983

>KOG0300|consensus

Probab=99.78  E-value=6.3e-18  Score=131.95  Aligned_cols=164  Identities=26%  Similarity=0.476  Sum_probs=130.5

Q ss_pred             CcCCCCCCCCCcccce---------------------------EEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEE
Q psy16881          2 HEFPMGDGPSLFNGTE---------------------------LILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVW   54 (222)
Q Consensus         2 ~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iw   54 (222)
                      ||.|.+|.|.=+.+++                           .++.+   |.+.|.+..|--.|+.++++++|.+..+|
T Consensus       223 ~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg---H~~vV~a~dWL~gg~Q~vTaSWDRTAnlw  299 (481)
T KOG0300|consen  223 WEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG---HRAVVSACDWLAGGQQMVTASWDRTANLW  299 (481)
T ss_pred             CcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec---cccceEehhhhcCcceeeeeeccccceee
Confidence            6788888888777761                           12223   47888998999999999999999999999


Q ss_pred             eCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEE
Q psy16881         55 RSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLV  134 (222)
Q Consensus        55 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~  134 (222)
                      |++++..+...                                                 .+|....+.++-+|..+.++
T Consensus       300 DVEtge~v~~L-------------------------------------------------tGHd~ELtHcstHptQrLVv  330 (481)
T KOG0300|consen  300 DVETGEVVNIL-------------------------------------------------TGHDSELTHCSTHPTQRLVV  330 (481)
T ss_pred             eeccCceeccc-------------------------------------------------cCcchhccccccCCcceEEE
Confidence            99977655322                                                 25667777788889899999


Q ss_pred             EEeCCCcEEEEeCCC-CceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCCC----------------------
Q psy16881        135 SGSVDKTVKLWDVPS-LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA----------------------  191 (222)
Q Consensus       135 sg~~dg~I~iwd~~~-~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~----------------------  191 (222)
                      +.+.|-+.++||++. -..+..|++|.+.|+++.|..+. .+++||+|++|++||++.                      
T Consensus       331 TsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g  409 (481)
T KOG0300|consen  331 TSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKG  409 (481)
T ss_pred             EeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecC
Confidence            999999999999984 35577899999999999998654 577999999999999851                      


Q ss_pred             -CeEEEeeCCCcEEEEeCCCCccccCCC
Q psy16881        192 -TLLASGSNDKTVTIWDMRGNLSVDVPL  218 (222)
Q Consensus       192 -~~l~s~~~d~~i~iwd~~~~~~~~~~~  218 (222)
                       +.+|---.++.|++||+.+.-+.++|-
T Consensus       410 ~~iIAiPhDNRqvRlfDlnG~RlaRlPr  437 (481)
T KOG0300|consen  410 HPIIAIPHDNRQVRLFDLNGNRLARLPR  437 (481)
T ss_pred             CceEEeccCCceEEEEecCCCccccCCc
Confidence             123333347889999999888888773

>KOG1036|consensus

Probab=99.78  E-value=1e-17  Score=129.84  Aligned_cols=133  Identities=26%  Similarity=0.438  Sum_probs=111.9

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ...|+.+.|+|.++.|++++|||++++|++....+..+                                          
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~------------------------------------------   50 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK------------------------------------------   50 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh------------------------------------------
Confidence            46799999999999999999999999999874321111                                          


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI  186 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l  186 (222)
                              -.|..++.+++|.+ ...+++|+.||.|+.+|++++... .+..|...|+|+.+++....+++||+|++|++
T Consensus        51 --------~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~  120 (323)
T KOG1036|consen   51 --------FKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKF  120 (323)
T ss_pred             --------eecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEE
Confidence                    13788999999976 567999999999999999987653 34568899999999999899999999999999


Q ss_pred             EeCC--------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        187 WDML--------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       187 wd~~--------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      ||.+                    +..|+.|+.|+.+.+||+|..
T Consensus       121 wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~  165 (323)
T KOG1036|consen  121 WDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNL  165 (323)
T ss_pred             EeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccc
Confidence            9985                    356888999999999999953

>KOG0310|consensus

Probab=99.78  E-value=5.6e-18  Score=138.07  Aligned_cols=175  Identities=26%  Similarity=0.336  Sum_probs=121.9

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ...|.++.|-.||++||+|...|.|++||.++...+..+  .+|....-.    +.+++.....+.+...+.+..+....
T Consensus        68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~--~ah~apv~~----~~f~~~d~t~l~s~sDd~v~k~~d~s  141 (487)
T KOG0310|consen   68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL--YAHQAPVHV----TKFSPQDNTMLVSGSDDKVVKYWDLS  141 (487)
T ss_pred             ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHH--hhccCceeE----EEecccCCeEEEecCCCceEEEEEcC
Confidence            456888999999999999999999999997653333322  122211100    11222222222222223322221111


Q ss_pred             eccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC-ceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSL-TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTV  184 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i  184 (222)
                      .......+.+|++-|.|.+++|.+. +++||+.||+||+||++.. ..+.++ .|..+|..+.+-|.|.+|++++.. .+
T Consensus       142 ~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn-~v  219 (487)
T KOG0310|consen  142 TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGN-SV  219 (487)
T ss_pred             CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCC-eE
Confidence            1111224568999999999998876 8999999999999999876 566666 477899999999999999998755 79


Q ss_pred             EEEeCC------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        185 TIWDML------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       185 ~lwd~~------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      ++||+.                        ...|.|++-|+.+++||+.
T Consensus       220 kVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t  268 (487)
T KOG0310|consen  220 KVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT  268 (487)
T ss_pred             EEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEcc
Confidence            999985                        2568999999999999954

>KOG0278|consensus

Probab=99.78  E-value=8.8e-19  Score=132.56  Aligned_cols=122  Identities=30%  Similarity=0.475  Sum_probs=89.9

Q ss_pred             cceEEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeee
Q psy16881         15 GTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFST   94 (222)
Q Consensus        15 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (222)
                      |-++.--.|.|+   |+.++|+.|.++|++|+++.-+|+||+......                                
T Consensus        91 gdelhsf~hkhi---vk~~af~~ds~~lltgg~ekllrvfdln~p~Ap--------------------------------  135 (334)
T KOG0278|consen   91 GDELHSFEHKHI---VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP--------------------------------  135 (334)
T ss_pred             hhhhhhhhhhhe---eeeEEecccchhhhccchHHHhhhhhccCCCCC--------------------------------
Confidence            334333345555   999999999999999999999999997632211                                


Q ss_pred             eeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCE
Q psy16881         95 FVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSL  174 (222)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~  174 (222)
                                      ...+.+|++.|..+-|....+.+++...|++||+||.++++.++++.- ...|+++.++++|++
T Consensus       136 ----------------p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~i  198 (334)
T KOG0278|consen  136 ----------------PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRI  198 (334)
T ss_pred             ----------------chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCE
Confidence                            112457889999999988888889889999999999999988887754 345677777777665


Q ss_pred             EEEeeCCCeEEEEeC
Q psy16881        175 LASGSNDKTVTIWDM  189 (222)
Q Consensus       175 l~s~s~D~~i~lwd~  189 (222)
                      |.. ...+.|+.||.
T Consensus       199 lTi-a~gssV~Fwda  212 (334)
T KOG0278|consen  199 LTI-AYGSSVKFWDA  212 (334)
T ss_pred             EEE-ecCceeEEecc
Confidence            533 34456667764

>KOG1445|consensus

Probab=99.78  E-value=1.3e-18  Score=146.06  Aligned_cols=133  Identities=28%  Similarity=0.448  Sum_probs=111.9

Q ss_pred             cCCCCCCCCCcccceEEEeeeeeeccceEEEEEcC-CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceec
Q psy16881          3 EFPMGDGPSLFNGTELILRGSVHIGSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRV   81 (222)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (222)
                      .||+|=-+.|+||..            |..+.|.| |.++||++++||.|++|.+..+-.....                
T Consensus       615 rLPDgv~p~l~Ngt~------------vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~----------------  666 (1012)
T KOG1445|consen  615 RLPDGVMPGLFNGTL------------VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE----------------  666 (1012)
T ss_pred             CCCcccccccccCce------------eeecccCCCChHHeeecccCceEEEEEeccCCCCccc----------------
Confidence            478999999999887            78888886 7789999999999999998643222111                


Q ss_pred             CccCCcccceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEeccCC
Q psy16881         82 PACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTLESHT  160 (222)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~  160 (222)
                                                ......+..|..+|+.+.|+|-. +.+++++.|.+|++||+.+.+.-..+.+|+
T Consensus       667 --------------------------~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHt  720 (1012)
T KOG1445|consen  667 --------------------------MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHT  720 (1012)
T ss_pred             --------------------------CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCc
Confidence                                      00111234689999999999975 689999999999999999998888899999


Q ss_pred             ccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881        161 RYVTCCTFSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       161 ~~V~~~~~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      +.|..++|||+|+++|+.+.||++++|+.
T Consensus       721 dqIf~~AWSpdGr~~AtVcKDg~~rVy~P  749 (1012)
T KOG1445|consen  721 DQIFGIAWSPDGRRIATVCKDGTLRVYEP  749 (1012)
T ss_pred             CceeEEEECCCCcceeeeecCceEEEeCC
Confidence            99999999999999999999999999986

>KOG1407|consensus

Probab=99.78  E-value=8.6e-18  Score=127.79  Aligned_cols=195  Identities=24%  Similarity=0.311  Sum_probs=130.7

Q ss_pred             CCCCCCCCCcccceEEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeec-cceecC
Q psy16881          4 FPMGDGPSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIE-GWGRVP   82 (222)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~   82 (222)
                      .|.++..+|+..   +++++   .+.|.+|+|.-+|..|++|+.|+++.+|.++..+...+....+|.....+ .|.   
T Consensus         3 ~t~~~~~~l~~r---~~~~~---~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~---   73 (313)
T KOG1407|consen    3 ETLPKFKSLKRR---ELQGH---VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWD---   73 (313)
T ss_pred             ccccchhhhhhH---Hhhhh---hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeC---
Confidence            345555666652   33444   67799999999999999999999999999987766655555555433211 111   


Q ss_pred             ccCCcccc-eeeeeeeeeEeeeeeeecc-------------------------------------CC--ccccccCCCEE
Q psy16881         83 ACPLCRTR-VFSTFVKQIIPTRVGVYGQ-------------------------------------DS--ETVGRHTSAVT  122 (222)
Q Consensus        83 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------------------------------~~--~~~~~h~~~i~  122 (222)
                        +..... +.+.....++.|++.....                                     ..  ..-+.....++
T Consensus        74 --~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~n  151 (313)
T KOG1407|consen   74 --PKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVN  151 (313)
T ss_pred             --CCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceee
Confidence              011111 1111222233332110000                                     00  00111234466


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC------------
Q psy16881        123 SVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML------------  190 (222)
Q Consensus       123 ~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~------------  190 (222)
                      .+.|+-++++++.....|+|.|....+-+.+.++++|.....|+.|+|+|+++|+|+.|..+.|||+.            
T Consensus       152 e~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld  231 (313)
T KOG1407|consen  152 EISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD  231 (313)
T ss_pred             eeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc
Confidence            67777666776666667888888888888888999999999999999999999999999999999973            


Q ss_pred             -----------CCeEEEeeCCCcEEEEeCC
Q psy16881        191 -----------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       191 -----------~~~l~s~~~d~~i~iwd~~  209 (222)
                                 +.+|||||+|..|-|=++.
T Consensus       232 wpVRTlSFS~dg~~lASaSEDh~IDIA~ve  261 (313)
T KOG1407|consen  232 WPVRTLSFSHDGRMLASASEDHFIDIAEVE  261 (313)
T ss_pred             CceEEEEeccCcceeeccCccceEEeEecc
Confidence                       5799999999988776665

>KOG0269|consensus

Probab=99.78  E-value=1.8e-18  Score=147.70  Aligned_cols=140  Identities=26%  Similarity=0.454  Sum_probs=112.8

Q ss_pred             eeeccceEEEEEcCC-CCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee
Q psy16881         24 VHIGSNMRCVRFSPD-TRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT  102 (222)
Q Consensus        24 ~~~~~~v~~l~~spd-g~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (222)
                      ..|.-.|.+++|++. ..+|++||+||+|++||+.......++                                     
T Consensus       130 ~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~-------------------------------------  172 (839)
T KOG0269|consen  130 NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF-------------------------------------  172 (839)
T ss_pred             hhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc-------------------------------------
Confidence            445677999999875 468999999999999998642211111                                     


Q ss_pred             eeeeeccCCccccccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC-ceEEEeccCCccEEEEEEcCCCCEEEEeeC
Q psy16881        103 RVGVYGQDSETVGRHTSAVTSVRFNHK-SSLLVSGSVDKTVKLWDVPSL-TCIKTLESHTRYVTCCTFSCDDSLLASGSN  180 (222)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~  180 (222)
                                  .+....|..++|+|. +++|+++.+.|.+++||+++- ++...+.+|..+|.|+.|+|++.+||||+.
T Consensus       173 ------------~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR  240 (839)
T KOG0269|consen  173 ------------RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR  240 (839)
T ss_pred             ------------cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC
Confidence                        113456778889875 578999999999999999864 567788999999999999999999999999


Q ss_pred             CCeEEEEeCC-------------------------CCeEEEee--CCCcEEEEeCCCCc
Q psy16881        181 DKTVTIWDML-------------------------ATLLASGS--NDKTVTIWDMRGNL  212 (222)
Q Consensus       181 D~~i~lwd~~-------------------------~~~l~s~~--~d~~i~iwd~~~~~  212 (222)
                      |++|+|||+.                         ...||+++  .|..|++||+++..
T Consensus       241 DK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY  299 (839)
T KOG0269|consen  241 DKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY  299 (839)
T ss_pred             CccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence            9999999984                         23577776  47789999999764

>KOG0313|consensus

Probab=99.77  E-value=1.7e-17  Score=131.75  Aligned_cols=168  Identities=28%  Similarity=0.393  Sum_probs=111.9

Q ss_pred             CCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee--eee-ccCCcccc
Q psy16881         39 TRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV--GVY-GQDSETVG  115 (222)
Q Consensus        39 g~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~  115 (222)
                      ++.|++|+.||.+++||.+. ......  .+|.... .....+.........+.+.....+..|..  +.. ......-.
T Consensus       115 ~~~IltgsYDg~~riWd~~G-k~~~~~--~Ght~~i-k~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~  190 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLKG-KSIKTI--VGHTGPI-KSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCR  190 (423)
T ss_pred             CceEEEeecCCeeEEEecCC-ceEEEE--ecCCcce-eeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhc
Confidence            68999999999999999864 333322  2222111 10000100000001111222222333321  111 11112234


Q ss_pred             ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-------------------------CCceEEEeccCCccEEEEEEcC
Q psy16881        116 RHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP-------------------------SLTCIKTLESHTRYVTCCTFSC  170 (222)
Q Consensus       116 ~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~-------------------------~~~~~~~~~~~~~~V~~~~~s~  170 (222)
                      +|+..|.+++..++|..+++|++|.+|+||+..                         ++..+..+.+|...|.++.|++
T Consensus       191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD  270 (423)
T ss_pred             ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence            899999999999999999999999999999921                         1223556789999999999997


Q ss_pred             CCCEEEEeeCCCeEEEEeCC----------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        171 DDSLLASGSNDKTVTIWDML----------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       171 ~~~~l~s~s~D~~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                       ...++++|+|.+|+.||+.                      ..+|++|+.|+-|++||+|..
T Consensus       271 -~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~  332 (423)
T KOG0313|consen  271 -ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG  332 (423)
T ss_pred             -CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCC
Confidence             6788999999999999984                      358999999999999999843

>KOG0308|consensus

Probab=99.77  E-value=7.4e-18  Score=141.64  Aligned_cols=149  Identities=26%  Similarity=0.455  Sum_probs=123.3

Q ss_pred             EEeeeeeeccceEEEEE-cCCCCeEEEecCCCeEEEEeCCCCce--EEeeccCCCcceeeccceecCccCCcccceeeee
Q psy16881         19 ILRGSVHIGSNMRCVRF-SPDTRLLATGGDDETVTVWRSDDLSL--IMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF   95 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~-spdg~~l~tgs~Dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (222)
                      +++.|   ..=|.|+++ -++..++|+||-|+.|.+||+..+..  +..++.             ++.+           
T Consensus       112 tir~H---~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~-------------~t~~-----------  164 (735)
T KOG0308|consen  112 TIRTH---KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN-------------VTVN-----------  164 (735)
T ss_pred             hhhcc---cchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc-------------cccc-----------
Confidence            34455   888999999 78888999999999999999986532  111100             0000           


Q ss_pred             eeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEE
Q psy16881         96 VKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLL  175 (222)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l  175 (222)
                                      ....+++..|.+++.++.|..+++|+.++.+++||.++.+.+..+.||++.|+++..+++|+.+
T Consensus       165 ----------------sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~  228 (735)
T KOG0308|consen  165 ----------------SLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRL  228 (735)
T ss_pred             ----------------cCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeE
Confidence                            0112678999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        176 ASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       176 ~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +++|.||+|++||+.                       -..+++|+.|+.|..=|++.
T Consensus       229 ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  229 LSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             eecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence            999999999999985                       24689999999999888874

>KOG0289|consensus

Probab=99.76  E-value=5.2e-17  Score=131.03  Aligned_cols=177  Identities=23%  Similarity=0.358  Sum_probs=128.4

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY  107 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (222)
                      ..+..+...|....+++|+.|.++-++|....+.+..+  .+|.-. +..   +.+.+.......+.....++.|..+..
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~--~Gh~kk-i~~---v~~~~~~~~v~~aSad~~i~vws~~~~  293 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATL--KGHTKK-ITS---VKFHKDLDTVITASADEIIRVWSVPLS  293 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhc--cCcceE-EEE---EEeccchhheeecCCcceEEeeccccc
Confidence            34666777777789999999999999998877766554  333221 111   111112222222223333444443221


Q ss_pred             ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccC--CccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESH--TRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~--~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                       ........|..+|+.+..+|.|.||++++.||+....|++++.++......  .-.+++.+|+|||.++++|+.|+.++
T Consensus       294 -s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vk  372 (506)
T KOG0289|consen  294 -SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVK  372 (506)
T ss_pred             -cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEE
Confidence             233445679999999999999999999999999999999999887666543  23478999999999999999999999


Q ss_pred             EEeCC-----------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        186 IWDML-----------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       186 lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      +||+.                       +.+||++.+|+.|++||+|+.
T Consensus       373 iwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl  421 (506)
T KOG0289|consen  373 IWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL  421 (506)
T ss_pred             EEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence            99985                       357999999999999999843

>KOG0646|consensus

Probab=99.75  E-value=3e-17  Score=133.26  Aligned_cols=142  Identities=25%  Similarity=0.445  Sum_probs=114.1

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY  107 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (222)
                      -+|+|+.|+-||.+|+|||.||.|.+|.+.+--  ...+  .+                                    .
T Consensus       124 Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv--~a~~--~~------------------------------------~  163 (476)
T KOG0646|consen  124 QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV--SADN--DH------------------------------------S  163 (476)
T ss_pred             cceeEEEEeCCCcEEEecCCCccEEEEEEEeec--cccc--CC------------------------------------C
Confidence            459999999999999999999999999864210  0000  00                                    0


Q ss_pred             ccCCccccccCCCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        108 GQDSETVGRHTSAVTSVRFNHKS--SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       108 ~~~~~~~~~h~~~i~~l~~~~~~--~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                      ......+..|+-+|+.+...+-|  .+++|++.|.++|+||+..+.++.++.- ...+.+++++|.++.++.|+.+|.|.
T Consensus       164 ~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~  242 (476)
T KOG0646|consen  164 VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIF  242 (476)
T ss_pred             ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEE
Confidence            11112456799999999887653  5899999999999999999998888765 45689999999999999999999999


Q ss_pred             EEeCC-----------------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        186 IWDML-----------------------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       186 lwd~~-----------------------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +.++.                                         +++|+||++||++.+||+.+
T Consensus       243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S  308 (476)
T KOG0646|consen  243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS  308 (476)
T ss_pred             eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence            98762                                         46899999999999999864

>KOG0274|consensus

Probab=99.74  E-value=3.7e-17  Score=140.60  Aligned_cols=184  Identities=30%  Similarity=0.470  Sum_probs=135.7

Q ss_pred             ccceE-EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCccccee
Q psy16881         14 NGTEL-ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF   92 (222)
Q Consensus        14 ~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (222)
                      +|.+. ++.+|   .+.|+|+..-+.  ++++|+.|.+|++|++..+.++....  +|......      ........+.
T Consensus       280 sg~C~~~l~gh---~stv~~~~~~~~--~~~sgs~D~tVkVW~v~n~~~l~l~~--~h~~~V~~------v~~~~~~lvs  346 (537)
T KOG0274|consen  280 TGECTHSLQGH---TSSVRCLTIDPF--LLVSGSRDNTVKVWDVTNGACLNLLR--GHTGPVNC------VQLDEPLLVS  346 (537)
T ss_pred             CCcEEEEecCC---CceEEEEEccCc--eEeeccCCceEEEEeccCcceEEEec--cccccEEE------EEecCCEEEE
Confidence            35555 56788   888999988874  67889999999999999988888774  23222111      0011122233


Q ss_pred             eeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceEEEeccCCccEEEEEEcCC
Q psy16881         93 STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL-TCIKTLESHTRYVTCCTFSCD  171 (222)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~V~~~~~s~~  171 (222)
                      ......+..|+.. ..+-...+.+|...|.++.+... +.+++|+.|++|++||+++. +|+..+.+|...+..+.  ..
T Consensus       347 gs~d~~v~VW~~~-~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~  422 (537)
T KOG0274|consen  347 GSYDGTVKVWDPR-TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LR  422 (537)
T ss_pred             EecCceEEEEEhh-hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cc
Confidence            3334445555533 23333456789999999988765 89999999999999999999 99999999999886555  45


Q ss_pred             CCEEEEeeCCCeEEEEeCC----------------------CCeEEEeeCCCcEEEEeCC-CCccc
Q psy16881        172 DSLLASGSNDKTVTIWDML----------------------ATLLASGSNDKTVTIWDMR-GNLSV  214 (222)
Q Consensus       172 ~~~l~s~s~D~~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~-~~~~~  214 (222)
                      ++.|++++.|++|++||..                      ...+++++.|+++++||++ +.+..
T Consensus       423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhh
Confidence            8899999999999999973                      1568889999999999998 44443

>KOG0306|consensus

Probab=99.74  E-value=3.8e-16  Score=133.39  Aligned_cols=187  Identities=25%  Similarity=0.327  Sum_probs=133.4

Q ss_pred             EEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeecccee-----------------
Q psy16881         18 LILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGR-----------------   80 (222)
Q Consensus        18 ~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----------------   80 (222)
                      +++.+|   .+.|+.++||.+...+++|+ .+.+++|+.++.+++++..........+..++.                 
T Consensus       367 i~~~GH---R~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla  442 (888)
T KOG0306|consen  367 IEIGGH---RSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLA  442 (888)
T ss_pred             eeeccc---hhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEee
Confidence            455565   89999999999988888875 578999999998888776432211111111110                 


Q ss_pred             -----------------cCccCCcccceeeeeeeeeEeeeeeeecc----CC--------ccccccCCCEEEEEEcCCCC
Q psy16881         81 -----------------VPACPLCRTRVFSTFVKQIIPTRVGVYGQ----DS--------ETVGRHTSAVTSVRFNHKSS  131 (222)
Q Consensus        81 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--------~~~~~h~~~i~~l~~~~~~~  131 (222)
                                       +...++...-..+.....+..|+......    ..        +.+ .-...|.|++++|+++
T Consensus       443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk  521 (888)
T KOG0306|consen  443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGK  521 (888)
T ss_pred             hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCc
Confidence                             01111112222222333344443221111    10        111 1357899999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC---------------------
Q psy16881        132 LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML---------------------  190 (222)
Q Consensus       132 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~---------------------  190 (222)
                      +++.+-.|++|+||-+.+.+..-++-||.-+|.|+.+||+++.++|||+|+.|++|-+.                     
T Consensus       522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~  601 (888)
T KOG0306|consen  522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL  601 (888)
T ss_pred             EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence            99999999999999999998888899999999999999999999999999999999763                     


Q ss_pred             --CCeEEEeeCCCcEEEEeCC
Q psy16881        191 --ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       191 --~~~l~s~~~d~~i~iwd~~  209 (222)
                        +.++.++|.|++|+-||-.
T Consensus       602 P~~~~FFt~gKD~kvKqWDg~  622 (888)
T KOG0306|consen  602 PKTHLFFTCGKDGKVKQWDGE  622 (888)
T ss_pred             ccceeEEEecCcceEEeechh
Confidence              4679999999999999864

>KOG0308|consensus

Probab=99.74  E-value=1.8e-17  Score=139.32  Aligned_cols=176  Identities=22%  Similarity=0.379  Sum_probs=116.7

Q ss_pred             EEEc-CCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccce-ecCccCCcccceeeeeeeeeEeeeeeeec-c
Q psy16881         33 VRFS-PDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWG-RVPACPLCRTRVFSTFVKQIIPTRVGVYG-Q  109 (222)
Q Consensus        33 l~~s-pdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  109 (222)
                      +..+ |.+++|+|||.||.|++|++....-..+....+..+. ...|. .+..+...+..........+..|+....+ .
T Consensus        30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~-HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~  108 (735)
T KOG0308|consen   30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH-HSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF  108 (735)
T ss_pred             ccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhh-hHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence            4444 5678899999999999998763221111100000000 01111 11122222223333333344444432211 1


Q ss_pred             CCccccccCCCEEEEEE-cCCCCEEEEEeCCCcEEEEeCCCCc--eEE--------Ee-ccCCccEEEEEEcCCCCEEEE
Q psy16881        110 DSETVGRHTSAVTSVRF-NHKSSLLVSGSVDKTVKLWDVPSLT--CIK--------TL-ESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       110 ~~~~~~~h~~~i~~l~~-~~~~~~l~sg~~dg~I~iwd~~~~~--~~~--------~~-~~~~~~V~~~~~s~~~~~l~s  177 (222)
                      -...++.|++-|.|+++ -++...++||+.|+.|.+||++++.  .+.        .+ .++...|.+++..+.|..|++
T Consensus       109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs  188 (735)
T KOG0308|consen  109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS  188 (735)
T ss_pred             hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence            22456789999999999 5666799999999999999999762  222        22 378889999999999999999


Q ss_pred             eeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        178 GSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       178 ~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      |+..+.+++||.+                       ++.+.|+|.|++|++||+.
T Consensus       189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg  243 (735)
T KOG0308|consen  189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG  243 (735)
T ss_pred             cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence            9999999999974                       4679999999999999997

>KOG0299|consensus

Probab=99.74  E-value=2.3e-17  Score=133.79  Aligned_cols=140  Identities=28%  Similarity=0.499  Sum_probs=120.4

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |...+.+++.||||+|||+|+.|..|.||+..+...+.                                          
T Consensus       201 h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~------------------------------------------  238 (479)
T KOG0299|consen  201 HVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK------------------------------------------  238 (479)
T ss_pred             ccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhh------------------------------------------
Confidence            36679999999999999999999999999987543322                                          


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                             ++.+|.+.|.+++|-.....+++++.|++|++|++.+...+.++-+|++.|..+.....++.+-+|+.|++++
T Consensus       239 -------~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~r  311 (479)
T KOG0299|consen  239 -------VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVR  311 (479)
T ss_pred             -------cccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeE
Confidence                   2356999999999987778899999999999999999888999999999999998888888888888999999


Q ss_pred             EEeCC---------------------CCeEEEeeCCCcEEEEeCC-CCccc
Q psy16881        186 IWDML---------------------ATLLASGSNDKTVTIWDMR-GNLSV  214 (222)
Q Consensus       186 lwd~~---------------------~~~l~s~~~d~~i~iwd~~-~~~~~  214 (222)
                      +|++.                     ...+++||.||.|.+|++- .++++
T Consensus       312 lwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf  362 (479)
T KOG0299|consen  312 LWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLF  362 (479)
T ss_pred             EEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCcee
Confidence            99983                     3569999999999999986 44443

>KOG0293|consensus

Probab=99.73  E-value=3.6e-17  Score=131.31  Aligned_cols=190  Identities=22%  Similarity=0.340  Sum_probs=126.8

Q ss_pred             CCcccceEEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccc
Q psy16881         11 SLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTR   90 (222)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (222)
                      ++.+|.+..+..+. ++-++.+++|.|||..+++|+.|+++..||.+... ....  .+.....+..   +....+.+..
T Consensus       297 Dv~tgd~~~~y~~~-~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W--~gvr~~~v~d---lait~Dgk~v  369 (519)
T KOG0293|consen  297 DVDTGDLRHLYPSG-LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNW--EGVRDPKVHD---LAITYDGKYV  369 (519)
T ss_pred             cCCcchhhhhcccC-cCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcc--cccccceeEE---EEEcCCCcEE
Confidence            45677777777775 56789999999999999999999999999987432 1111  1111011110   1111122222


Q ss_pred             eeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCcc---EEEEE
Q psy16881         91 VFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRY---VTCCT  167 (222)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~---V~~~~  167 (222)
                      ........++..+..  ....+.+-.-..+|++++++.+++++++--.+..|.+||++..+.+.++.||...   |++ +
T Consensus       370 l~v~~d~~i~l~~~e--~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS-C  446 (519)
T KOG0293|consen  370 LLVTVDKKIRLYNRE--ARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS-C  446 (519)
T ss_pred             EEEecccceeeechh--hhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe-c
Confidence            111211122221110  0001111223567999999999999999989999999999988888889998764   333 3


Q ss_pred             Ec-CCCCEEEEeeCCCeEEEEeCC------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        168 FS-CDDSLLASGSNDKTVTIWDML------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       168 ~s-~~~~~l~s~s~D~~i~lwd~~------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      |- .+...+++||+|++|.+|+..                        ..++||||.|++||||.++.
T Consensus       447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            43 355899999999999999964                        24799999999999998874

>KOG0301|consensus

Probab=99.73  E-value=2.1e-16  Score=133.82  Aligned_cols=173  Identities=27%  Similarity=0.422  Sum_probs=128.7

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ   98 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (222)
                      +|.+|   .++|.|++...++. +++||+|.++++|...+....  .  .+|...   .|+. ...+.. ....+.....
T Consensus        96 ~LkgH---~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~--l--~gH~as---VWAv-~~l~e~-~~vTgsaDKt  162 (745)
T KOG0301|consen   96 TLKGH---KSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYS--L--QGHTAS---VWAV-ASLPEN-TYVTGSADKT  162 (745)
T ss_pred             hhhcc---ccceeeeecCCcCc-eEecccccceEEecchhhhcc--c--CCcchh---eeee-eecCCC-cEEeccCcce
Confidence            34455   89999999888887 899999999999986543222  1  344322   1221 111111 2233334444


Q ss_pred             eEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEe
Q psy16881         99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG  178 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~  178 (222)
                      +..|..   +.....+.+|++-|..+++-++ ..|+|++.||.|+.|++ +++++.+..+|+..|.+++...++..|+|+
T Consensus       163 IklWk~---~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~  237 (745)
T KOG0301|consen  163 IKLWKG---GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVST  237 (745)
T ss_pred             eeeccC---CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEe
Confidence            555542   3334577899999999999765 45999999999999998 789999999999999999988888899999


Q ss_pred             eCCCeEEEEeCC--------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        179 SNDKTVTIWDML--------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       179 s~D~~i~lwd~~--------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      ++|+++++|+..                    ..-+++|+.||.||+|..+
T Consensus       238 gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  238 GEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             cCCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence            999999999863                    2348899999999999776

>KOG0302|consensus

Probab=99.73  E-value=1e-16  Score=127.42  Aligned_cols=118  Identities=24%  Similarity=0.468  Sum_probs=97.5

Q ss_pred             eccceEEEEEcCCCC-eEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         26 IGSNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        26 ~~~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      |...|-.|+|||..+ .||++|-||+|+|||+.........                                       
T Consensus       256 H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~---------------------------------------  296 (440)
T KOG0302|consen  256 HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV---------------------------------------  296 (440)
T ss_pred             cccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee---------------------------------------
Confidence            578899999999765 7899999999999998642110000                                       


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---ceEEEeccCCccEEEEEEcCC-CCEEEEeeC
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL---TCIKTLESHTRYVTCCTFSCD-DSLLASGSN  180 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~---~~~~~~~~~~~~V~~~~~s~~-~~~l~s~s~  180 (222)
                              ....|.+.|+.|+|+..-.+|++|+.||+++|||+++.   +.+.+++-|..+|+++.|+|. ...|++++.
T Consensus       297 --------~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~  368 (440)
T KOG0302|consen  297 --------STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE  368 (440)
T ss_pred             --------EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC
Confidence                    01348889999999988889999999999999999864   568899999999999999986 467888999


Q ss_pred             CCeEEEEeCC
Q psy16881        181 DKTVTIWDML  190 (222)
Q Consensus       181 D~~i~lwd~~  190 (222)
                      |.+|.+||+.
T Consensus       369 D~QitiWDls  378 (440)
T KOG0302|consen  369 DNQITIWDLS  378 (440)
T ss_pred             CCcEEEEEee
Confidence            9999999983

>KOG0772|consensus

Probab=99.72  E-value=5e-17  Score=133.66  Aligned_cols=122  Identities=26%  Similarity=0.499  Sum_probs=93.7

Q ss_pred             eccceEEEEEcCCCC-eEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         26 IGSNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        26 ~~~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      |.+.+.|.+|.|+.+ .++|++.||++|||++.+.......         +                             
T Consensus       267 Hia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV---------i-----------------------------  308 (641)
T KOG0772|consen  267 HIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV---------I-----------------------------  308 (641)
T ss_pred             ceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE---------E-----------------------------
Confidence            368899999999865 6889999999999998753311100         0                             


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce---EEEeccCCc--cEEEEEEcCCCCEEEEee
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC---IKTLESHTR--YVTCCTFSCDDSLLASGS  179 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~---~~~~~~~~~--~V~~~~~s~~~~~l~s~s  179 (222)
                      ..     ....+-.-.++.++|+++++.+|+|..||+|.+||..+...   ...-.+|..  .|+|++||++|++|++-+
T Consensus       309 k~-----k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg  383 (641)
T KOG0772|consen  309 KT-----KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG  383 (641)
T ss_pred             ee-----ccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence            00     00112355678899999999999999999999999865422   223356766  899999999999999999


Q ss_pred             CCCeEEEEeCC
Q psy16881        180 NDKTVTIWDML  190 (222)
Q Consensus       180 ~D~~i~lwd~~  190 (222)
                      .|.++++||++
T Consensus       384 ~D~tLKvWDLr  394 (641)
T KOG0772|consen  384 FDDTLKVWDLR  394 (641)
T ss_pred             CCCceeeeecc
Confidence            99999999984

>KOG1407|consensus

Probab=99.72  E-value=5.7e-16  Score=117.95  Aligned_cols=149  Identities=22%  Similarity=0.318  Sum_probs=107.9

Q ss_pred             EEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee-eeeEeeeeeeeccC
Q psy16881         32 CVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV-KQIIPTRVGVYGQD  110 (222)
Q Consensus        32 ~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  110 (222)
                      .+.|+|+|+++++++.|..|.+.|..+.+...+....  ....-     .... .....++.+.. ..+.+.... ..+.
T Consensus       111 ~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~--~e~ne-----~~w~-~~nd~Fflt~GlG~v~ILsyp-sLkp  181 (313)
T KOG1407|consen  111 NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK--FEVNE-----ISWN-NSNDLFFLTNGLGCVEILSYP-SLKP  181 (313)
T ss_pred             EEEEcCCCCEEEEecCcccEEEEEecccceeehhccc--ceeee-----eeec-CCCCEEEEecCCceEEEEecc-cccc
Confidence            3689999999999999999999998876655433211  11100     1111 12223333222 222222111 1223


Q ss_pred             CccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881        111 SETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       111 ~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      ...+..|...+.||.|+|+|++|++|+.|..+.+||+...-|+..+.-+.-+|+.++||.+|++||+||+|..|-|=++
T Consensus       182 v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~v  260 (313)
T KOG1407|consen  182 VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEV  260 (313)
T ss_pred             ccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEec
Confidence            3456779999999999999999999999999999999998899999999999999999999999999999998876443

>KOG0643|consensus

Probab=99.72  E-value=9.9e-16  Score=117.04  Aligned_cols=140  Identities=27%  Similarity=0.445  Sum_probs=116.9

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ   98 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (222)
                      .+++|   .-++..|.|+.+|.+|++++.|.+..+|-..+++.+-                                   
T Consensus         5 ~l~GH---ERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG-----------------------------------   46 (327)
T KOG0643|consen    5 LLQGH---ERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG-----------------------------------   46 (327)
T ss_pred             ccccC---ccccceEEecCCCcEEEEecCCCCceEEEecCCceee-----------------------------------
Confidence            34555   4668889999999999999999999999654443322                                   


Q ss_pred             eEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEe
Q psy16881         99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG  178 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~  178 (222)
                                    ...+|++.|.|+..+-+.+.+++|+.|.++++||+++++++..++. ...|..+.|+++|++++..
T Consensus        47 --------------ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~  111 (327)
T KOG0643|consen   47 --------------TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILAS  111 (327)
T ss_pred             --------------eecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEE
Confidence                          2357999999999999999999999999999999999999998875 4679999999999988877


Q ss_pred             eCC-----CeEEEEeCC------------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        179 SND-----KTVTIWDML------------------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       179 s~D-----~~i~lwd~~------------------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      +++     +.|.++|+.                              ...+++|.+|+.|.+||.++.
T Consensus       112 tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g  179 (327)
T KOG0643|consen  112 TDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTG  179 (327)
T ss_pred             ehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccC
Confidence            644     478888874                              357999999999999999953

>KOG4283|consensus

Probab=99.71  E-value=2e-16  Score=122.43  Aligned_cols=78  Identities=33%  Similarity=0.580  Sum_probs=58.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCC-EEEEeeCCCeEEEEeCC--------------------
Q psy16881        132 LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS-LLASGSNDKTVTIWDML--------------------  190 (222)
Q Consensus       132 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~-~l~s~s~D~~i~lwd~~--------------------  190 (222)
                      .+++|..|-.|++.|+.++.+-..+.+|.+.|.++.|+|... .|++|+.||.|++||++                    
T Consensus       160 LiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~  239 (397)
T KOG4283|consen  160 LIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPIL  239 (397)
T ss_pred             EEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccc
Confidence            455555556666666666666667778888899999998754 56789999999999974                    


Q ss_pred             ------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        191 ------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       191 ------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                                        +.++++++.|..+++|...
T Consensus       240 ~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~  276 (397)
T KOG4283|consen  240 KTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME  276 (397)
T ss_pred             cccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence                              2357788888889999875

>KOG0973|consensus

Probab=99.71  E-value=1.8e-16  Score=139.71  Aligned_cols=150  Identities=31%  Similarity=0.490  Sum_probs=118.1

Q ss_pred             eeeeccceEEEEEcCCCCeEEEec--CCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeE
Q psy16881         23 SVHIGSNMRCVRFSPDTRLLATGG--DDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQII  100 (222)
Q Consensus        23 ~~~~~~~v~~l~~spdg~~l~tgs--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (222)
                      -.|....|.+++.+|||..+|||+  .||.++||..+..-  .+....   ..                           
T Consensus         9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl--~~~~~~---~~---------------------------   56 (942)
T KOG0973|consen    9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVL--DEKEEK---NE---------------------------   56 (942)
T ss_pred             cccCCeeEEEEEecCCceeEecCCccccccceeecccccc--chhhhh---hc---------------------------
Confidence            356667799999999999999999  89999999765211  000000   00                           


Q ss_pred             eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC------------------CceEEEeccCCcc
Q psy16881        101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS------------------LTCIKTLESHTRY  162 (222)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~------------------~~~~~~~~~~~~~  162 (222)
                           ........+..|.+.|+|+.|+++|++||+|++|+.|.||....                  .+++..+.+|...
T Consensus        57 -----~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~D  131 (942)
T KOG0973|consen   57 -----NLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSD  131 (942)
T ss_pred             -----ccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCc
Confidence                 00001112346999999999999999999999999999998762                  1255677899999


Q ss_pred             EEEEEEcCCCCEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        163 VTCCTFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       163 V~~~~~s~~~~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      |..+.|+|++.++++++-|++|.+||..                       +.++||-+.|++|++|++.
T Consensus       132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~  201 (942)
T KOG0973|consen  132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS  201 (942)
T ss_pred             cceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcc
Confidence            9999999999999999999999999963                       5789999999999999965

>KOG0301|consensus

Probab=99.71  E-value=4e-16  Score=132.10  Aligned_cols=185  Identities=25%  Similarity=0.372  Sum_probs=125.7

Q ss_pred             EEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCC--ccc-ceeee
Q psy16881         18 LILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPL--CRT-RVFST   94 (222)
Q Consensus        18 ~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~   94 (222)
                      .++.+|   ...|+.+++.+. ..++++|.||++++|+-............++..-..     ...+..  .+. .....
T Consensus         8 ~~l~gH---~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~-----~~i~y~e~~~~~l~~g~   78 (745)
T KOG0301|consen    8 HELEGH---KSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIA-----NSICYAESDKGRLVVGG   78 (745)
T ss_pred             EEeccC---ccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceee-----ccceeccccCcceEeec
Confidence            355566   888999887644 468899999999999876554443221111111000     001100  011 11222


Q ss_pred             eeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCE
Q psy16881         95 FVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSL  174 (222)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~  174 (222)
                      ....+..+.. ........+.+|+..|.+++...++. ++|||+|.++++|-.  +++...+.+|+..|+++..-|.+ .
T Consensus        79 ~D~~i~v~~~-~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~  153 (745)
T KOG0301|consen   79 MDTTIIVFKL-SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-T  153 (745)
T ss_pred             ccceEEEEec-CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-c
Confidence            2222332221 11223346788999999998877666 999999999999965  46667799999999999998887 7


Q ss_pred             EEEeeCCCeEEEEeCC--------------------CCeEEEeeCCCcEEEEeCCCCccccC
Q psy16881        175 LASGSNDKTVTIWDML--------------------ATLLASGSNDKTVTIWDMRGNLSVDV  216 (222)
Q Consensus       175 l~s~s~D~~i~lwd~~--------------------~~~l~s~~~d~~i~iwd~~~~~~~~~  216 (222)
                      ++|||.|++|++|.-.                    ...++|++.|+.|++|++.++...+.
T Consensus       154 ~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~  215 (745)
T KOG0301|consen  154 YVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEM  215 (745)
T ss_pred             EEeccCcceeeeccCCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeee
Confidence            8899999999999742                    34689999999999999988765543

>KOG0310|consensus

Probab=99.71  E-value=2.7e-16  Score=128.36  Aligned_cols=174  Identities=24%  Similarity=0.355  Sum_probs=115.3

Q ss_pred             ccceEEEEEcCCCCe-EEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         27 GSNMRCVRFSPDTRL-LATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        27 ~~~v~~l~~spdg~~-l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      -+.|.+++|||...+ +|+++ .-.+.||+..+.....++..   ....+.+   +.+..+.+..+.......+...+. 
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~sr---Fk~~v~s---~~fR~DG~LlaaGD~sG~V~vfD~-   97 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSR---FKDVVYS---VDFRSDGRLLAAGDESGHVKVFDM-   97 (487)
T ss_pred             cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHh---hccceeE---EEeecCCeEEEccCCcCcEEEecc-
Confidence            477999999997654 45444 36899998765433322210   0000000   111111111111111111211110 


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCC-CEEEEeeCCCe
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD-SLLASGSNDKT  183 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~-~~l~s~s~D~~  183 (222)
                      ......+.+..|+.++..+.|+|.++ ++++|+.|+.+++||+.+......+.+|+++|+|.+++|.. .+++|||=||+
T Consensus        98 k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~  177 (487)
T KOG0310|consen   98 KSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK  177 (487)
T ss_pred             ccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce
Confidence            01112345678999999999999876 78999999999999999887767899999999999999864 58889999999


Q ss_pred             EEEEeCC-----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        184 VTIWDML-----------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       184 i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      |++||++                       +.++|+++ ...+++||+.
T Consensus       178 vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~  225 (487)
T KOG0310|consen  178 VRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLT  225 (487)
T ss_pred             EEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEec
Confidence            9999985                       24677776 4579999997

>KOG0303|consensus

Probab=99.70  E-value=1e-16  Score=128.04  Aligned_cols=121  Identities=26%  Similarity=0.439  Sum_probs=102.1

Q ss_pred             ccceEEEEEcC-CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         27 GSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        27 ~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      .+.|..++|.| +...||+||.|.+|.||.+.+.-+.....                                       
T Consensus        81 t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---------------------------------------  121 (472)
T KOG0303|consen   81 TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---------------------------------------  121 (472)
T ss_pred             cccccccccCccCCceeecCCCCceEEEEECCCcccccCcc---------------------------------------
Confidence            78999999998 55689999999999999987543332210                                       


Q ss_pred             eeccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTV  184 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i  184 (222)
                         .....+.+|+..|..++|+|.. +.|++++.|++|.|||+.+++.+.++. |.+.|.+++|+.+|.+|+|++.|++|
T Consensus       122 ---epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkv  197 (472)
T KOG0303|consen  122 ---EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKV  197 (472)
T ss_pred             ---cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeeccccee
Confidence               0001245799999999999976 689999999999999999999888877 99999999999999999999999999


Q ss_pred             EEEeCC
Q psy16881        185 TIWDML  190 (222)
Q Consensus       185 ~lwd~~  190 (222)
                      ++||.+
T Consensus       198 Rv~dpr  203 (472)
T KOG0303|consen  198 RVIDPR  203 (472)
T ss_pred             EEEcCC
Confidence            999985

>KOG1332|consensus

Probab=99.70  E-value=1.1e-16  Score=120.83  Aligned_cols=139  Identities=22%  Similarity=0.265  Sum_probs=111.8

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.|..+....-|++|||++.|++|+||.+.......                                          
T Consensus        10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~------------------------------------------   47 (299)
T KOG1332|consen   10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSK------------------------------------------   47 (299)
T ss_pred             hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCce------------------------------------------
Confidence            36778777888889999999999999999875321100                                          


Q ss_pred             eeccCCccccccCCCEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCc--eEEEeccCCccEEEEEEcCC--CCEEEEee
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNH--KSSLLVSGSVDKTVKLWDVPSLT--CIKTLESHTRYVTCCTFSCD--DSLLASGS  179 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~~~~V~~~~~s~~--~~~l~s~s  179 (222)
                          ....+.+|.++|..++|-+  .|.+|++++.||.|.||.-.++.  ...+...|+..|++++|-|+  |-.|++++
T Consensus        48 ----ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lacas  123 (299)
T KOG1332|consen   48 ----LLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACAS  123 (299)
T ss_pred             ----eeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEee
Confidence                0012457999999999954  58899999999999999877653  34567789999999999875  67999999


Q ss_pred             CCCeEEEEeCC----------------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        180 NDKTVTIWDML----------------------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       180 ~D~~i~lwd~~----------------------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      .||+|.+.+..                                        ...|+||+.|+.++||+...
T Consensus       124 SDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~  194 (299)
T KOG1332|consen  124 SDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS  194 (299)
T ss_pred             CCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCC
Confidence            99999998763                                        13599999999999999874

>KOG1332|consensus

Probab=99.70  E-value=6.2e-16  Score=116.77  Aligned_cols=188  Identities=24%  Similarity=0.316  Sum_probs=126.1

Q ss_pred             eEEEeeeeeeccceEEEEEcC--CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeee
Q psy16881         17 ELILRGSVHIGSNMRCVRFSP--DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFST   94 (222)
Q Consensus        17 ~~~~~~~~~~~~~v~~l~~sp--dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (222)
                      ..+|.+|   +++|-.++|-.  -|.+||+++.||+|.||+...++-........|.. .+......|.. .....+.+.
T Consensus        49 l~~L~Gh---~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~-SVNsV~waphe-ygl~Lacas  123 (299)
T KOG1332|consen   49 LAELTGH---SGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSA-SVNSVAWAPHE-YGLLLACAS  123 (299)
T ss_pred             eeEecCC---CCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcc-cceeecccccc-cceEEEEee
Confidence            4577788   99999999964  79999999999999999988764222111122221 11111111110 001112222


Q ss_pred             eeeeeEeeeeeeecc--CCccccccCCCEEEEEEcCC---C-----------CEEEEEeCCCcEEEEeCCCCc--eEEEe
Q psy16881         95 FVKQIIPTRVGVYGQ--DSETVGRHTSAVTSVRFNHK---S-----------SLLVSGSVDKTVKLWDVPSLT--CIKTL  156 (222)
Q Consensus        95 ~~~~~~~~~~~~~~~--~~~~~~~h~~~i~~l~~~~~---~-----------~~l~sg~~dg~I~iwd~~~~~--~~~~~  156 (222)
                      ....+........+.  .......|.-.|++++|.|.   |           +.|++|+.|+.|+||+..++.  .-..+
T Consensus       124 SDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l  203 (299)
T KOG1332|consen  124 SDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL  203 (299)
T ss_pred             CCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh
Confidence            222333222111111  11234468999999999876   4           569999999999999987653  33458


Q ss_pred             ccCCccEEEEEEcCCC----CEEEEeeCCCeEEEEeCC--------------------------CCeEEEeeCCCcEEEE
Q psy16881        157 ESHTRYVTCCTFSCDD----SLLASGSNDKTVTIWDML--------------------------ATLLASGSNDKTVTIW  206 (222)
Q Consensus       157 ~~~~~~V~~~~~s~~~----~~l~s~s~D~~i~lwd~~--------------------------~~~l~s~~~d~~i~iw  206 (222)
                      .+|++.|+.++|.|.-    ..||++|.||++.||...                          +..|+.++-|+++++|
T Consensus       204 ~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw  283 (299)
T KOG1332|consen  204 EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW  283 (299)
T ss_pred             hhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence            8999999999999863    689999999999999752                          4678999999999999


Q ss_pred             eCC
Q psy16881        207 DMR  209 (222)
Q Consensus       207 d~~  209 (222)
                      .-+
T Consensus       284 ke~  286 (299)
T KOG1332|consen  284 KEN  286 (299)
T ss_pred             EeC
Confidence            765

>KOG0288|consensus

Probab=99.69  E-value=3.6e-16  Score=125.48  Aligned_cols=179  Identities=23%  Similarity=0.314  Sum_probs=124.9

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      .+.|..+.|.++++.+++++.|+.+++|+++..+...++  .+|......    +.+.......+.......+..|+...
T Consensus       219 ~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL--sGHtdkVt~----ak~~~~~~~vVsgs~DRtiK~WDl~k  292 (459)
T KOG0288|consen  219 LGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL--SGHTDKVTA----AKFKLSHSRVVSGSADRTIKLWDLQK  292 (459)
T ss_pred             CCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhh--cccccceee----ehhhccccceeeccccchhhhhhhhh
Confidence            677999999999999999999999999999988777665  455544322    11111111111112222222232211


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI  186 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l  186 (222)
                      ..-....+  ....+..|..+  ...+++|..|++||.||+++..++.++..+. .|+++..++++..|.+.+.|-++++
T Consensus       293 ~~C~kt~l--~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~v  367 (459)
T KOG0288|consen  293 AYCSKTVL--PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKV  367 (459)
T ss_pred             hheecccc--ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceee
Confidence            10111111  12334444443  4568999999999999999999999888876 7999999999999999999999999


Q ss_pred             EeCC---------------------------CCeEEEeeCCCcEEEEeCC-CCccccC
Q psy16881        187 WDML---------------------------ATLLASGSNDKTVTIWDMR-GNLSVDV  216 (222)
Q Consensus       187 wd~~---------------------------~~~l~s~~~d~~i~iwd~~-~~~~~~~  216 (222)
                      .|++                           ..++++||.||.|+||++. +++-..+
T Consensus       368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l  425 (459)
T KOG0288|consen  368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVL  425 (459)
T ss_pred             eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEe
Confidence            9985                           3689999999999999997 5554443

>KOG0278|consensus

Probab=99.68  E-value=1.8e-15  Score=114.80  Aligned_cols=154  Identities=21%  Similarity=0.290  Sum_probs=109.8

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      .+.|+.+-|-...+.+++..+|++||+||..++..+.......+-    ..   .....+.. ...-.....+..|+...
T Consensus       143 tg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~V----tS---lEvs~dG~-ilTia~gssV~Fwdaks  214 (334)
T KOG0278|consen  143 TGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPV----TS---LEVSQDGR-ILTIAYGSSVKFWDAKS  214 (334)
T ss_pred             CCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCC----cc---eeeccCCC-EEEEecCceeEEecccc
Confidence            778999999888888888899999999999998877655322110    00   00001111 11111222333333221


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe-ccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL-ESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~-~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                      .+..+  -......|++.+++|+...++.|++|..+..||+.++..+..+ ++|..+|.|+.|+|+|..-++||+||+|+
T Consensus       215 f~~lK--s~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTir  292 (334)
T KOG0278|consen  215 FGLLK--SYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIR  292 (334)
T ss_pred             cccee--eccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEE
Confidence            11110  0113567889999999999999999999999999999988885 89999999999999999999999999999


Q ss_pred             EEeCC
Q psy16881        186 IWDML  190 (222)
Q Consensus       186 lwd~~  190 (222)
                      ||-..
T Consensus       293 lWQt~  297 (334)
T KOG0278|consen  293 LWQTT  297 (334)
T ss_pred             EEEec
Confidence            99874

>KOG0641|consensus

Probab=99.68  E-value=3.6e-15  Score=111.80  Aligned_cols=140  Identities=25%  Similarity=0.415  Sum_probs=111.3

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      .+-|..+ |+=+|-.+++|++|.+|++||+.-..++.......+.                                   
T Consensus       183 tghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~-----------------------------------  226 (350)
T KOG0641|consen  183 TGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD-----------------------------------  226 (350)
T ss_pred             cccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccC-----------------------------------
Confidence            3445554 5557888999999999999998744444332110000                                   


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI  186 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l  186 (222)
                           ..+  ..+.|..++.+|.|+.+++|..|....+||++-+..++.+..|+..|+|+.|||...++.+++-|.+|++
T Consensus       227 -----~gl--essavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikl  299 (350)
T KOG0641|consen  227 -----GGL--ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKL  299 (350)
T ss_pred             -----CCc--ccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEE
Confidence                 001  2466889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCC---------------------------CeEEEeeCCCcEEEEeCC
Q psy16881        187 WDMLA---------------------------TLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       187 wd~~~---------------------------~~l~s~~~d~~i~iwd~~  209 (222)
                      -|+.+                           -.++|.+.|++..+|.+.
T Consensus       300 tdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  300 TDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             eecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            99842                           237788889999999764

>KOG0268|consensus

Probab=99.67  E-value=6.9e-16  Score=122.21  Aligned_cols=182  Identities=24%  Similarity=0.398  Sum_probs=116.3

Q ss_pred             ccceEEEEEcCCC-CeEEEecCCCeEEEEeCCCCceEEeeccCC-Ccce------e---------ecccee-cC-c-cCC
Q psy16881         27 GSNMRCVRFSPDT-RLLATGGDDETVTVWRSDDLSLIMETNDRG-HTQG------R---------IEGWGR-VP-A-CPL   86 (222)
Q Consensus        27 ~~~v~~l~~spdg-~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~-~~~~------~---------~~~~~~-~~-~-~~~   86 (222)
                      .+.|.|++=.|.. ..+|+|+.||.|+|||+....+...+.... .-.+      .         +..|.. .+ . ...
T Consensus        66 rdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~til  145 (433)
T KOG0268|consen   66 RDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTIL  145 (433)
T ss_pred             ccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeee
Confidence            6779999988875 789999999999999998766555442110 0000      0         000110 00 0 000


Q ss_pred             -----------cccceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEE
Q psy16881         87 -----------CRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIK  154 (222)
Q Consensus        87 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~  154 (222)
                                 .....+++....+..|+..... ....+.=-...|.++.|+|.. ..|+++..|+.|-+||+++.+.+.
T Consensus       146 g~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~  224 (433)
T KOG0268|consen  146 GKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDN-PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK  224 (433)
T ss_pred             ccccccccccccccccccccCceeeecccccCC-ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc
Confidence                       0011222222233333321100 111111124568888888875 478888888999899988765543


Q ss_pred             Ee------------------------------------------ccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC--
Q psy16881        155 TL------------------------------------------ESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML--  190 (222)
Q Consensus       155 ~~------------------------------------------~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~--  190 (222)
                      ++                                          .+|-+.|.++.|||.|+-+++||-|++|+||...  
T Consensus       225 KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  225 KVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG  304 (433)
T ss_pred             eeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence            32                                          3466678999999999999999999999999873  


Q ss_pred             ----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        191 ----------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       191 ----------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                                            ..+++|||.|+.|++|.-+
T Consensus       305 ~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  305 HSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             cchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence                                  4689999999999999865

>KOG0299|consensus

Probab=99.67  E-value=2.4e-15  Score=122.19  Aligned_cols=158  Identities=22%  Similarity=0.387  Sum_probs=121.0

Q ss_pred             eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      .|.-+|.+++++|+++++++++.||+|.=|++.++......-+..   . +-           +        ..      
T Consensus       140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~---e-v~-----------k--------~~------  190 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD---E-VL-----------K--------SH------  190 (479)
T ss_pred             cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc---h-hh-----------h--------hc------
Confidence            345679999999999999999999999999987665331110000   0 00           0        00      


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeE
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTV  184 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i  184 (222)
                      ........  .+|...|.+++.+++|++|++|+.|..|.|||+.+.+.++.+.+|...|.+++|-..-..+++++.|+++
T Consensus       191 ~~~~k~~r--~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsv  268 (479)
T KOG0299|consen  191 GNPLKESR--KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSV  268 (479)
T ss_pred             cCCCCccc--ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCce
Confidence            00000111  2688899999999999999999999999999999999999999999999999998888899999999999


Q ss_pred             EEEeCC-----------------------CCeEEEeeCCCcEEEEeCCCCcc
Q psy16881        185 TIWDML-----------------------ATLLASGSNDKTVTIWDMRGNLS  213 (222)
Q Consensus       185 ~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~~~~  213 (222)
                      ++|++.                       ...+-+|+.|+++++|++-.+.+
T Consensus       269 kvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq  320 (479)
T KOG0299|consen  269 KVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ  320 (479)
T ss_pred             EEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce
Confidence            999973                       12344455999999999964443

>KOG0269|consensus

Probab=99.66  E-value=6.4e-16  Score=132.28  Aligned_cols=96  Identities=32%  Similarity=0.550  Sum_probs=86.2

Q ss_pred             ccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCC-CCEEEEeeCCCeEEEEeCC-
Q psy16881        114 VGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCD-DSLLASGSNDKTVTIWDML-  190 (222)
Q Consensus       114 ~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~-~~~l~s~s~D~~i~lwd~~-  190 (222)
                      +..|.-.++++.|++.. ++|++|+.||+||+||++..+...++.+....|+.|.|+|. +..++++.+.|.+.+||++ 
T Consensus       129 f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq  208 (839)
T KOG0269|consen  129 FNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ  208 (839)
T ss_pred             hhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccC
Confidence            45688899999999776 69999999999999999988888888888889999999984 7889999999999999996 


Q ss_pred             -----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        191 -----------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       191 -----------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                                             ..+||+||.|++|+|||+.
T Consensus       209 p~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t  250 (839)
T KOG0269|consen  209 PDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT  250 (839)
T ss_pred             chhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence                                   3589999999999999987

>KOG1446|consensus

Probab=99.65  E-value=8.9e-14  Score=108.44  Aligned_cols=166  Identities=18%  Similarity=0.229  Sum_probs=111.5

Q ss_pred             CcccceE-EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccc
Q psy16881         12 LFNGTEL-ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTR   90 (222)
Q Consensus        12 ~~~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (222)
                      |++-+.+ ++.+|   ...|..|+.+|-++.+++++.|++|++||+...++.-.....+.-   +..++       ....
T Consensus        87 l~dNkylRYF~GH---~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p---i~AfD-------p~GL  153 (311)
T KOG1446|consen   87 LHDNKYLRYFPGH---KKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP---IAAFD-------PEGL  153 (311)
T ss_pred             eecCceEEEcCCC---CceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc---ceeEC-------CCCc
Confidence            4444444 44555   888999999999999999999999999999865544332211111   11110       1112


Q ss_pred             eeeeeee--eeEeeeeeeec-cCCccc---cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccE-
Q psy16881         91 VFSTFVK--QIIPTRVGVYG-QDSETV---GRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV-  163 (222)
Q Consensus        91 ~~~~~~~--~~~~~~~~~~~-~~~~~~---~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V-  163 (222)
                      .++....  .+...+....+ .....+   .+.....+.+.|+++|++++.++..+.+.+.|.-+|....++.++...- 
T Consensus       154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~  233 (311)
T KOG1446|consen  154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN  233 (311)
T ss_pred             EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC
Confidence            2222211  22222222221 111111   1235668899999999999999999999999999999888887765432 


Q ss_pred             --EEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        164 --TCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       164 --~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                        -..+|+|+++.+++|+.||+|.+|++.
T Consensus       234 ~~~~a~ftPds~Fvl~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  234 LPLSATFTPDSKFVLSGSDDGTIHVWNLE  262 (311)
T ss_pred             cceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence              467899999999999999999999985

>KOG1274|consensus

Probab=99.64  E-value=8.9e-15  Score=127.36  Aligned_cols=136  Identities=24%  Similarity=0.380  Sum_probs=113.6

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      .-++++++|+-+|+.+|.||+|-.|++-+..+....                                            
T Consensus        96 tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~--------------------------------------------  131 (933)
T KOG1274|consen   96 TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE--------------------------------------------  131 (933)
T ss_pred             eccceEEEEecCCcEEEeecCceeEEEEeccccchh--------------------------------------------
Confidence            356899999999999999999999999876543211                                            


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc--------CCccEEEEEEcCCCCEEEEe
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES--------HTRYVTCCTFSCDDSLLASG  178 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~--------~~~~V~~~~~s~~~~~l~s~  178 (222)
                           ..+++|.++|.++.|+|.+++||+.+.||+|++||+.++.+...+.+        ....+..++|+|+|..++..
T Consensus       132 -----~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~  206 (933)
T KOG1274|consen  132 -----KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP  206 (933)
T ss_pred             -----eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee
Confidence                 13457999999999999999999999999999999998876554432        13446779999999999999


Q ss_pred             eCCCeEEEEeCC-------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        179 SNDKTVTIWDML-------------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       179 s~D~~i~lwd~~-------------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      +.|+.|++|+..                         +.+||+++.||.|.|||..+.
T Consensus       207 ~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~  264 (933)
T KOG1274|consen  207 PVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH  264 (933)
T ss_pred             ccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc
Confidence            999999999863                         578999999999999999863

>KOG0270|consensus

Probab=99.64  E-value=6.3e-15  Score=119.30  Aligned_cols=181  Identities=19%  Similarity=0.318  Sum_probs=124.5

Q ss_pred             eeccceEEEEEcCC-CCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         25 HIGSNMRCVRFSPD-TRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        25 ~~~~~v~~l~~spd-g~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      +|...|..+++... ..+||+||.|.+|++||++++.+...+...+   ..++.....+..+  .....+.....+...+
T Consensus       241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~---k~Vq~l~wh~~~p--~~LLsGs~D~~V~l~D  315 (463)
T KOG0270|consen  241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG---KKVQTLEWHPYEP--SVLLSGSYDGTVALKD  315 (463)
T ss_pred             cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC---CceeEEEecCCCc--eEEEeccccceEEeee
Confidence            45777888888765 3579999999999999999998877654222   2222221111111  1111122222222222


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-ceEEEeccCCccEEEEEEcCCC-CEEEEeeC
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSL-TCIKTLESHTRYVTCCTFSCDD-SLLASGSN  180 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~V~~~~~s~~~-~~l~s~s~  180 (222)
                      ..........+ .-.+.|..+.|++.. ..++.+..||.|+-+|+|+. +++.++++|...|.+++++..- .+++|+|.
T Consensus       316 ~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~  394 (463)
T KOG0270|consen  316 CRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAST  394 (463)
T ss_pred             ccCccccCceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccc
Confidence            11111111111 135789999998876 57888899999999999864 8899999999999999998765 56788999


Q ss_pred             CCeEEEEeCC--------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        181 DKTVTIWDML--------------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       181 D~~i~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      |+.+++|++.                          .-.+|.|+..+.+++||+...
T Consensus       395 d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  395 DKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             cceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence            9999999984                          135888999999999998744

>KOG0288|consensus

Probab=99.64  E-value=1.2e-16  Score=128.24  Aligned_cols=145  Identities=32%  Similarity=0.547  Sum_probs=118.9

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      .+.|..+.|-++...|++|+.|..|++|++....+.                                            
T Consensus       175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~--------------------------------------------  210 (459)
T KOG0288|consen  175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE--------------------------------------------  210 (459)
T ss_pred             ccccceeEEccCcchhhhcchhhhhhhhhcccchhh--------------------------------------------
Confidence            455889999999899999999999999987532210                                            


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI  186 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l  186 (222)
                         ....+.+..+.|+.+.|.++++++++++.|+.+++|+..+.+...++.+|++.|+++.|......+++|+.|++|++
T Consensus       211 ---~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~  287 (459)
T KOG0288|consen  211 ---LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKL  287 (459)
T ss_pred             ---hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhh
Confidence               00123345678999999999999999999999999999999999999999999999999877777999999999999


Q ss_pred             EeCCC--------------------CeEEEeeCCCcEEEEeCC-CCccccCCC
Q psy16881        187 WDMLA--------------------TLLASGSNDKTVTIWDMR-GNLSVDVPL  218 (222)
Q Consensus       187 wd~~~--------------------~~l~s~~~d~~i~iwd~~-~~~~~~~~~  218 (222)
                      ||+..                    ..++||=.|++|++||.+ ......+|+
T Consensus       288 WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~  340 (459)
T KOG0288|consen  288 WDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPL  340 (459)
T ss_pred             hhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeec
Confidence            99851                    235666689999999987 445665554

>KOG1036|consensus

Probab=99.64  E-value=9.7e-15  Score=113.44  Aligned_cols=117  Identities=24%  Similarity=0.441  Sum_probs=90.7

Q ss_pred             EeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeee
Q psy16881         20 LRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQI   99 (222)
Q Consensus        20 ~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (222)
                      ++..-.++.++.+.+|.++ ..+++|+-||.|+.+|+.++...                                     
T Consensus        47 l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~-------------------------------------   88 (323)
T KOG1036|consen   47 LKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED-------------------------------------   88 (323)
T ss_pred             hhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-------------------------------------
Confidence            3444456899999999864 56789999999999998643211                                     


Q ss_pred             EeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEee
Q psy16881        100 IPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS  179 (222)
Q Consensus       100 ~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s  179 (222)
                                   .+..|..+|.|+.+.+..+.+++|++|++|++||.+....+..+... ..|.|+..  .++.|++|+
T Consensus        89 -------------~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v--~g~~LvVg~  152 (323)
T KOG1036|consen   89 -------------QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDV--SGNRLVVGT  152 (323)
T ss_pred             -------------eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceEEEEec--cCCEEEEee
Confidence                         12358899999999988889999999999999999875555555443 36777665  488899999


Q ss_pred             CCCeEEEEeCC
Q psy16881        180 NDKTVTIWDML  190 (222)
Q Consensus       180 ~D~~i~lwd~~  190 (222)
                      .|+.+.+||++
T Consensus       153 ~~r~v~iyDLR  163 (323)
T KOG1036|consen  153 SDRKVLIYDLR  163 (323)
T ss_pred             cCceEEEEEcc
Confidence            99999999983

>KOG0267|consensus

Probab=99.63  E-value=2.6e-16  Score=133.80  Aligned_cols=145  Identities=34%  Similarity=0.639  Sum_probs=124.3

Q ss_pred             eeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         24 VHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        24 ~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      ..|++.|.|+..-..++.+++|++|-++-+|.+.+.....                                        
T Consensus        25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~----------------------------------------   64 (825)
T KOG0267|consen   25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT----------------------------------------   64 (825)
T ss_pred             hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh----------------------------------------
Confidence            4568889998887788899999999999999764321110                                        


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKT  183 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~  183 (222)
                               .+.+|..+|.++.|++....++.|+.+|+||+||+...+.+.++.+|...+.++.|+|.+.+.|+|+.|..
T Consensus        65 ---------S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd  135 (825)
T KOG0267|consen   65 ---------SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTD  135 (825)
T ss_pred             ---------eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccccccc
Confidence                     12468999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCC-----------------------CCeEEEeeCCCcEEEEeCC-CCccccCC
Q psy16881        184 VTIWDML-----------------------ATLLASGSNDKTVTIWDMR-GNLSVDVP  217 (222)
Q Consensus       184 i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~-~~~~~~~~  217 (222)
                      +++||++                       +.+++++++|.+++|||+. +++..+++
T Consensus       136 ~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~  193 (825)
T KOG0267|consen  136 LKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK  193 (825)
T ss_pred             ceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccc
Confidence            9999985                       3589999999999999996 77765554

>KOG0650|consensus

Probab=99.63  E-value=2.2e-14  Score=120.10  Aligned_cols=198  Identities=20%  Similarity=0.340  Sum_probs=126.4

Q ss_pred             cCCCCCCCCCcccce-EEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceec
Q psy16881          3 EFPMGDGPSLFNGTE-LILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRV   81 (222)
Q Consensus         3 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (222)
                      +||.++----|--++ +.+++|   .+.|++|...|.|..|++|+.||+|+||.+.+++++......+...  ...|...
T Consensus       378 kLPsp~dLrPFPt~~~lvyrGH---tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~--~vaw~P~  452 (733)
T KOG0650|consen  378 KLPSPKDLRPFPTRCALVYRGH---TGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIR--SVAWNPL  452 (733)
T ss_pred             cCCChhhcCCCcceeeeeEecc---CCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeE--EEEecCC
Confidence            455555444443333 456788   8889999999999999999999999999999999987654332111  1111110


Q ss_pred             CccC---------------Ccc---------cceeee-----eeeeeEeeeee----------------------eec--
Q psy16881         82 PACP---------------LCR---------TRVFST-----FVKQIIPTRVG----------------------VYG--  108 (222)
Q Consensus        82 ~~~~---------------~~~---------~~~~~~-----~~~~~~~~~~~----------------------~~~--  108 (222)
                      +..+               ...         ..+...     ...++..|...                      .|-  
T Consensus       453 ~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk  532 (733)
T KOG0650|consen  453 SDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK  532 (733)
T ss_pred             CCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence            0000               000         000000     00001111100                      000  


Q ss_pred             ------------------------cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEE
Q psy16881        109 ------------------------QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVT  164 (222)
Q Consensus       109 ------------------------~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~  164 (222)
                                              .....|...++.|.++.|+|...+|+.++. ..|+|||+..+.+++++......|.
T Consensus       533 GDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS  611 (733)
T KOG0650|consen  533 GDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWIS  611 (733)
T ss_pred             CceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeee
Confidence                                    000112233456677777777666666653 5788888877777777777778899


Q ss_pred             EEEEcCCCCEEEEeeCCCeEEEEeCC------------------------CCeEEEeeCCCcEEEE
Q psy16881        165 CCTFSCDDSLLASGSNDKTVTIWDML------------------------ATLLASGSNDKTVTIW  206 (222)
Q Consensus       165 ~~~~s~~~~~l~s~s~D~~i~lwd~~------------------------~~~l~s~~~d~~i~iw  206 (222)
                      .++.+|.|..|+.++-|+.+.++|+.                        -++++||+.|+++.++
T Consensus       612 ~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  612 SMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF  677 (733)
T ss_pred             eeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence            99999999999999999999999984                        3689999999999988

>KOG1273|consensus

Probab=99.63  E-value=1e-14  Score=113.93  Aligned_cols=131  Identities=20%  Similarity=0.408  Sum_probs=103.0

Q ss_pred             eEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeecc
Q psy16881         30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQ  109 (222)
Q Consensus        30 v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (222)
                      ..|+.|++-|.+||+|+.||.|-|||+.+...                                                
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------------------------------------------------   57 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------------------------------------------------   57 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccch------------------------------------------------
Confidence            67899999999999999999999999874321                                                


Q ss_pred             CCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc---------C--Cc-----------c-----
Q psy16881        110 DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES---------H--TR-----------Y-----  162 (222)
Q Consensus       110 ~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~---------~--~~-----------~-----  162 (222)
                       .+++.+|.-+|.+++|+++|+.|+|++.|..|++||+..+.+++.+.-         |  +.           +     
T Consensus        58 -ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~  136 (405)
T KOG1273|consen   58 -ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDF  136 (405)
T ss_pred             -hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEe
Confidence             123457899999999999999999999999999999988777655421         0  00           0     


Q ss_pred             -------------------EEEEEEcCCCCEEEEeeCCCeEEEEeCC------------------------CCeEEEeeC
Q psy16881        163 -------------------VTCCTFSCDDSLLASGSNDKTVTIWDML------------------------ATLLASGSN  199 (222)
Q Consensus       163 -------------------V~~~~~s~~~~~l~s~s~D~~i~lwd~~------------------------~~~l~s~~~  199 (222)
                                         ..+..|++.|++|++|...|.+.++|..                        +..++.-+.
T Consensus       137 s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts  216 (405)
T KOG1273|consen  137 SDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS  216 (405)
T ss_pred             cCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC
Confidence                               0122366778899999999999999863                        346777788


Q ss_pred             CCcEEEEeCC
Q psy16881        200 DKTVTIWDMR  209 (222)
Q Consensus       200 d~~i~iwd~~  209 (222)
                      |+.||.|+++
T Consensus       217 DRvIR~ye~~  226 (405)
T KOG1273|consen  217 DRVIRTYEIS  226 (405)
T ss_pred             CceEEEEehh
Confidence            9999999876

>KOG0647|consensus

Probab=99.62  E-value=4.7e-14  Score=109.51  Aligned_cols=112  Identities=22%  Similarity=0.359  Sum_probs=82.4

Q ss_pred             eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      .|.++|.+++|+.||..+++|+-|+++++||+.++...                                          
T Consensus        70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~------------------------------------------  107 (347)
T KOG0647|consen   70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS------------------------------------------  107 (347)
T ss_pred             ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee------------------------------------------
Confidence            36889999999999999999999999999998754321                                          


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCC
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSS--LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDK  182 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~  182 (222)
                              .+..|..+|.++.|-+..+  .|+||++|++||.||+++...+.++...+. +  .+.+.--.+++.+..++
T Consensus       108 --------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-v--Ya~Dv~~pm~vVata~r  176 (347)
T KOG0647|consen  108 --------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-V--YAADVLYPMAVVATAER  176 (347)
T ss_pred             --------eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-e--eehhccCceeEEEecCC
Confidence                    1234888899888865554  799999999999999998877776654332 2  22333344555566666


Q ss_pred             eEEEEeC
Q psy16881        183 TVTIWDM  189 (222)
Q Consensus       183 ~i~lwd~  189 (222)
                      .|.+|++
T Consensus       177 ~i~vynL  183 (347)
T KOG0647|consen  177 HIAVYNL  183 (347)
T ss_pred             cEEEEEc
Confidence            6666655

>KOG4328|consensus

Probab=99.62  E-value=1.5e-14  Score=117.64  Aligned_cols=181  Identities=19%  Similarity=0.284  Sum_probs=123.8

Q ss_pred             ccceEEEEEcCCC-CeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         27 GSNMRCVRFSPDT-RLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        27 ~~~v~~l~~spdg-~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      ++.|.++.|+|.. ..+++.|.||+|++=|++.......+... ....-+..   ..+........+....+....++..
T Consensus       234 s~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~-~d~~~fs~---~d~~~e~~~vl~~~~~G~f~~iD~R  309 (498)
T KOG4328|consen  234 SGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD-TDNIWFSS---LDFSAESRSVLFGDNVGNFNVIDLR  309 (498)
T ss_pred             CccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcC-ccceeeee---ccccCCCccEEEeecccceEEEEee
Confidence            6889999999965 47888899999999998865422111100 00011111   1122222333333333333333333


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCc--e--EEEeccCCccEEEEEEcCCCCEEEEeeC
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLT--C--IKTLESHTRYVTCCTFSCDDSLLASGSN  180 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~--~--~~~~~~~~~~V~~~~~s~~~~~l~s~s~  180 (222)
                      ..+.+...+.-|+..|+.++++|... +++|++.|++.+|||+++..  .  +-....|...|.+..|||.+..|+|.+.
T Consensus       310 ~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~  389 (498)
T KOG4328|consen  310 TDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ  389 (498)
T ss_pred             cCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc
Confidence            33444445556888999999999875 79999999999999998532  1  2333478999999999999888999999


Q ss_pred             CCeEEEEeCC--------------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        181 DKTVTIWDML--------------------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       181 D~~i~lwd~~--------------------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      |..|+|||..                                ..++++|-.-+.|-++|-.+.
T Consensus       390 D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~  452 (498)
T KOG4328|consen  390 DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG  452 (498)
T ss_pred             CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence            9999999972                                246888888888999998743

>KOG0316|consensus

Probab=99.61  E-value=3.9e-14  Score=106.70  Aligned_cols=192  Identities=23%  Similarity=0.327  Sum_probs=119.2

Q ss_pred             cccceEEE-eeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceee-cccee---c--C---
Q psy16881         13 FNGTELIL-RGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRI-EGWGR---V--P---   82 (222)
Q Consensus        13 ~~~~~~~~-~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~---~--~---   82 (222)
                      +.|.+++. .+|   +-.|..++.+.|...+++++.|..+.+||+.+++..+.+.  +|..... ..+..   +  +   
T Consensus        47 ~rg~liktYsgh---G~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r--gH~aqVNtV~fNeesSVv~Sgsf  121 (307)
T KOG0316|consen   47 LRGALIKTYSGH---GHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFR--GHLAQVNTVRFNEESSVVASGSF  121 (307)
T ss_pred             cccceeeeecCC---CceeeeccccccccccccCCCCceEEEEEcccCeeeeecc--cccceeeEEEecCcceEEEeccc
Confidence            34555533 355   6679999999999999999999999999999998887663  2221110 00000   0  0   


Q ss_pred             ----ccCCcccceeee------eeeeeEeeee-------eeeccCCc---------cccccCCCEEEEEEcCCCCEEEEE
Q psy16881         83 ----ACPLCRTRVFST------FVKQIIPTRV-------GVYGQDSE---------TVGRHTSAVTSVRFNHKSSLLVSG  136 (222)
Q Consensus        83 ----~~~~~~~~~~~~------~~~~~~~~~~-------~~~~~~~~---------~~~~h~~~i~~l~~~~~~~~l~sg  136 (222)
                          ...+|+...+.+      ..+.+...++       +......+         .......+|++++|+++++..+.+
T Consensus       122 D~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~  201 (307)
T KOG0316|consen  122 DSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLAS  201 (307)
T ss_pred             cceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEe
Confidence                000011100000      0000000000       00000000         011235789999999999999999


Q ss_pred             eCCCcEEEEeCCCCceEEEeccCCcc--EEEEEEcCCCCEEEEeeCCCeEEEEeCCCCeEEEee-CCCcEEEEeCC
Q psy16881        137 SVDKTVKLWDVPSLTCIKTLESHTRY--VTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGS-NDKTVTIWDMR  209 (222)
Q Consensus       137 ~~dg~I~iwd~~~~~~~~~~~~~~~~--V~~~~~s~~~~~l~s~s~D~~i~lwd~~~~~l~s~~-~d~~i~iwd~~  209 (222)
                      +.|+++++.|-.+++.+...++|...  -..++++.....+++||+||.+.+||+....+++.- .-+++.+-|+.
T Consensus       202 ~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~  277 (307)
T KOG0316|consen  202 SLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLS  277 (307)
T ss_pred             eccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeee
Confidence            99999999999999999999998753  335667777889999999999999999654444432 23344444443

>KOG2394|consensus

Probab=99.61  E-value=5.6e-15  Score=122.26  Aligned_cols=117  Identities=19%  Similarity=0.301  Sum_probs=92.5

Q ss_pred             CCCCCCCCCcccceEEEe-----eeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccc
Q psy16881          4 FPMGDGPSLFNGTELILR-----GSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGW   78 (222)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~   78 (222)
                      +++|+.-+.+.++..+-+     .+.. .+.|...+|+|||++||+.|.||.+|||++++..++...             
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~-~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m-------------  328 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIG-EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM-------------  328 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEec-cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH-------------
Confidence            456666666666644331     1111 346888999999999999999999999998765433211             


Q ss_pred             eecCccCCcccceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc
Q psy16881         79 GRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES  158 (222)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~  158 (222)
                                                          +..-+...|++|+|||+++++|++|-.|.||.+..++.+..-++
T Consensus       329 ------------------------------------kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG  372 (636)
T KOG2394|consen  329 ------------------------------------KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG  372 (636)
T ss_pred             ------------------------------------HhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc
Confidence                                                12345678999999999999999999999999999999999999


Q ss_pred             CCccEEEEEEcC
Q psy16881        159 HTRYVTCCTFSC  170 (222)
Q Consensus       159 ~~~~V~~~~~s~  170 (222)
                      |+++|..|+|+|
T Consensus       373 HkSWVs~VaFDp  384 (636)
T KOG2394|consen  373 HKSWVSVVAFDP  384 (636)
T ss_pred             cccceeeEeecc
Confidence            999999999996

>KOG0270|consensus

Probab=99.61  E-value=4.1e-15  Score=120.38  Aligned_cols=137  Identities=28%  Similarity=0.392  Sum_probs=96.4

Q ss_pred             eccceEEEEEcC-------CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881         26 IGSNMRCVRFSP-------DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ   98 (222)
Q Consensus        26 ~~~~v~~l~~sp-------dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (222)
                      +.+...|++|-.       -|+++|.|..|..|.|||++=...+...-..+...                        ++
T Consensus       172 lpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~------------------------sk  227 (463)
T KOG0270|consen  172 LPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKA------------------------SK  227 (463)
T ss_pred             ccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhh------------------------hh
Confidence            355566766642       26899999999999999986211110000000000                        00


Q ss_pred             eEeeeeeeeccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCC-CCEEE
Q psy16881         99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCD-DSLLA  176 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~-~~~l~  176 (222)
                      .    ............+|+..|..++|+..- +.|+||+.|.+|++||+.++++..++..|...|.++.|+|. ..+|+
T Consensus       228 ~----~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LL  303 (463)
T KOG0270|consen  228 K----KKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLL  303 (463)
T ss_pred             h----hhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEE
Confidence            0    000011112234699999999998765 58999999999999999999999999999999999999986 56888


Q ss_pred             EeeCCCeEEEEeCC
Q psy16881        177 SGSNDKTVTIWDML  190 (222)
Q Consensus       177 s~s~D~~i~lwd~~  190 (222)
                      +||.|+++.+.|.+
T Consensus       304 sGs~D~~V~l~D~R  317 (463)
T KOG0270|consen  304 SGSYDGTVALKDCR  317 (463)
T ss_pred             eccccceEEeeecc
Confidence            99999999999974

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.61  E-value=6e-14  Score=106.62  Aligned_cols=126  Identities=22%  Similarity=0.353  Sum_probs=94.1

Q ss_pred             cceEEEEEcCCCCeEE--EecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         28 SNMRCVRFSPDTRLLA--TGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~--tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      +.|..++|+|+|+.+|  +|..+++|.+||++ ...+.++                                        
T Consensus        60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~----------------------------------------   98 (194)
T PF08662_consen   60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF----------------------------------------   98 (194)
T ss_pred             CceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee----------------------------------------
Confidence            4599999999999754  45568899999974 1111110                                        


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCC
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVD---KTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDK  182 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~  182 (222)
                                 +...++.+.|+|+|++++.++.+   |.|.+||.++.+.+.+...  ..+..++|||+|++|++++...
T Consensus        99 -----------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t~~  165 (194)
T PF08662_consen   99 -----------GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATATTSP  165 (194)
T ss_pred             -----------cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEEEecc
Confidence                       13456789999999999998754   5699999998888877643  3478999999999999987653


Q ss_pred             eEEEEeCCCCeEEEeeCCCcEEEEeCCCCccccCCCCc
Q psy16881        183 TVTIWDMLATLLASGSNDKTVTIWDMRGNLSVDVPLNY  220 (222)
Q Consensus       183 ~i~lwd~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  220 (222)
                      ..             ..|+.++||+..+.+..+.+.+.
T Consensus       166 r~-------------~~dng~~Iw~~~G~~l~~~~~~~  190 (194)
T PF08662_consen  166 RL-------------RVDNGFKIWSFQGRLLYKKPFDE  190 (194)
T ss_pred             ce-------------eccccEEEEEecCeEeEecchhh
Confidence            32             23778888888887777766654

>KOG2445|consensus

Probab=99.61  E-value=7.9e-14  Score=108.57  Aligned_cols=119  Identities=24%  Similarity=0.278  Sum_probs=90.9

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |...|.|+.|.+-|+++|+++.|++|+|||..+..-....                                 .     .
T Consensus        12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~---------------------------------T-----s   53 (361)
T KOG2445|consen   12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSC---------------------------------T-----S   53 (361)
T ss_pred             CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEE---------------------------------e-----e
Confidence            3577999999999999999999999999996532111000                                 0     0


Q ss_pred             eeccCCccccccCCCEEEEEE-cCC-CCEEEEEeCCCcEEEEeC--C---C----CceEEEeccCCccEEEEEEcC--CC
Q psy16881        106 VYGQDSETVGRHTSAVTSVRF-NHK-SSLLVSGSVDKTVKLWDV--P---S----LTCIKTLESHTRYVTCCTFSC--DD  172 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~-~~~-~~~l~sg~~dg~I~iwd~--~---~----~~~~~~~~~~~~~V~~~~~s~--~~  172 (222)
                             ..+.|.+.|..+.| +|. |+.+++++.|++++||.=  +   .    -....++......|+.+.|.|  -|
T Consensus        54 -------~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlG  126 (361)
T KOG2445|consen   54 -------SWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLG  126 (361)
T ss_pred             -------eEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcc
Confidence                   12358888888888 443 789999999999999953  1   1    123456666777899999998  48


Q ss_pred             CEEEEeeCCCeEEEEeC
Q psy16881        173 SLLASGSNDKTVTIWDM  189 (222)
Q Consensus       173 ~~l~s~s~D~~i~lwd~  189 (222)
                      -.||+++.||.++||+.
T Consensus       127 LklA~~~aDG~lRIYEA  143 (361)
T KOG2445|consen  127 LKLAAASADGILRIYEA  143 (361)
T ss_pred             eEEEEeccCcEEEEEec
Confidence            89999999999999985

>KOG2048|consensus

Probab=99.60  E-value=1.9e-13  Score=115.76  Aligned_cols=176  Identities=20%  Similarity=0.299  Sum_probs=128.2

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceee-eeeeeeEeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFS-TFVKQIIPTRVG  105 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  105 (222)
                      .+.|.++||+.+.+.||.+-.||.|.||++...-+....- .+.....+++..+.     ...+.++ .....+..|+..
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi-~g~~drsIE~L~W~-----e~~RLFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVI-HGPEDRSIESLAWA-----EGGRLFSSGLSGSITEWDLH   98 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEE-ecCCCCceeeEEEc-----cCCeEEeecCCceEEEEecc
Confidence            4679999999999999999999999999998754433221 22222223322111     2233343 344456666532


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE--eccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKT--LESHTRYVTCCTFSCDDSLLASGSNDKT  183 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~--~~~~~~~V~~~~~s~~~~~l~s~s~D~~  183 (222)
                       .......+....+.|++++.+|.+..++.|+.||.+.+.+...++....  +.-.+..|-+++|++++..|++|+.||.
T Consensus        99 -~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~  177 (691)
T KOG2048|consen   99 -TLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV  177 (691)
T ss_pred             -cCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence             2223334444578899999999999999999999888888877766543  3344678999999999999999999999


Q ss_pred             EEEEeCC------------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        184 VTIWDML------------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       184 i~lwd~~------------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      |++||..                              ...++||..-|+|++||..
T Consensus       178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~  233 (691)
T KOG2048|consen  178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSI  233 (691)
T ss_pred             EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEccc
Confidence            9999974                              3469999999999999986

>KOG0646|consensus

Probab=99.58  E-value=5.6e-14  Score=114.44  Aligned_cols=136  Identities=18%  Similarity=0.319  Sum_probs=113.7

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      +.+.|.|++-+|+|.+|+.|...|.|++|.+.++.++..+                                        
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~----------------------------------------  119 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL----------------------------------------  119 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH----------------------------------------
Confidence            4677999999999999999989999999998876654321                                        


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC---------CCceEEEeccCCccEEEEEEcCC--CCE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP---------SLTCIKTLESHTRYVTCCTFSCD--DSL  174 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~---------~~~~~~~~~~~~~~V~~~~~s~~--~~~  174 (222)
                               .+|=..|+++.|+.+|.+++||+.||-|.+|++.         +-+.+..+..|.-.|+.+...+.  ..+
T Consensus       120 ---------~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~r  190 (476)
T KOG0646|consen  120 ---------SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNAR  190 (476)
T ss_pred             ---------HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccce
Confidence                     3466789999999999999999999999999863         23567889999999999988754  478


Q ss_pred             EEEeeCCCeEEEEeCC----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        175 LASGSNDKTVTIWDML----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       175 l~s~s~D~~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      |+|+|.|.++++||+.                      ...+..|+++|.|-+.++-+
T Consensus       191 l~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~  248 (476)
T KOG0646|consen  191 LYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFK  248 (476)
T ss_pred             EEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhc
Confidence            9999999999999984                      24688889999888877653

>KOG1539|consensus

Probab=99.58  E-value=1.9e-14  Score=124.27  Aligned_cols=150  Identities=23%  Similarity=0.344  Sum_probs=121.0

Q ss_pred             CCCcccceE-EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcc
Q psy16881         10 PSLFNGTEL-ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCR   88 (222)
Q Consensus        10 ~~~~~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (222)
                      .|+=+|.-- ++..++-|++.|+.++...-++.+++++.||-+++|++.+..+....                       
T Consensus       475 fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l-----------------------  531 (910)
T KOG1539|consen  475 FNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL-----------------------  531 (910)
T ss_pred             EEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeee-----------------------
Confidence            344455433 33334566889999999999999999999999999998754432211                       


Q ss_pred             cceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEE
Q psy16881         89 TRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTF  168 (222)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~  168 (222)
                                                 .-...++++.++.....++.+..|=.|+++|..+.+.++++.+|...|++++|
T Consensus       532 ---------------------------~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~F  584 (910)
T KOG1539|consen  532 ---------------------------RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTF  584 (910)
T ss_pred             ---------------------------ccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEe
Confidence                                       01344566777777788999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEeeCCCeEEEEeCC----------------------CCeEEEeeCC-CcEEEEeCC
Q psy16881        169 SCDDSLLASGSNDKTVTIWDML----------------------ATLLASGSND-KTVTIWDMR  209 (222)
Q Consensus       169 s~~~~~l~s~s~D~~i~lwd~~----------------------~~~l~s~~~d-~~i~iwd~~  209 (222)
                      ||+|+.|++++.|++|++||+.                      +.+||++..| ..|++|.=+
T Consensus       585 S~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  585 SPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             CCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence            9999999999999999999984                      4689999877 789999643

>KOG1034|consensus

Probab=99.58  E-value=1e-13  Score=108.83  Aligned_cols=109  Identities=22%  Similarity=0.465  Sum_probs=92.8

Q ss_pred             ccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEe---ccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881        114 VGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTL---ESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       114 ~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~---~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      +.+|...|+.|.++|.. +++++++.|-.||+|++++..|+..+   .+|.+.|-++.|+++|.+|++++.|-++++|++
T Consensus       131 ~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l  210 (385)
T KOG1034|consen  131 YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRL  210 (385)
T ss_pred             eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEec
Confidence            35699999999999986 69999999999999999999998765   679999999999999999999999999999998


Q ss_pred             C-------------------------------------------------CCeEEEeeCCCcEEEEeC-C-CCc-cccCC
Q psy16881        190 L-------------------------------------------------ATLLASGSNDKTVTIWDM-R-GNL-SVDVP  217 (222)
Q Consensus       190 ~-------------------------------------------------~~~l~s~~~d~~i~iwd~-~-~~~-~~~~~  217 (222)
                      .                                                 +.++.|-|.++.|..|.+ + .+. ....|
T Consensus       211 ~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp  290 (385)
T KOG1034|consen  211 NVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKP  290 (385)
T ss_pred             ChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCC
Confidence            3                                                 246888888999999998 4 332 34447


Q ss_pred             CCccC
Q psy16881        218 LNYCC  222 (222)
Q Consensus       218 ~~~~~  222 (222)
                      ++.||
T Consensus       291 ~es~~  295 (385)
T KOG1034|consen  291 PESAT  295 (385)
T ss_pred             Cccce
Confidence            77664

>KOG1273|consensus

Probab=99.57  E-value=3.6e-13  Score=105.33  Aligned_cols=155  Identities=14%  Similarity=0.259  Sum_probs=100.9

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee-eeEeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK-QIIPTRVG  105 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  105 (222)
                      --+|.+++||+||+.|+|+|.|..|.+||+.++..+.......    ++-.....+..   .....+.... ........
T Consensus        65 ~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~s----pv~~~q~hp~k---~n~~va~~~~~sp~vi~~s  137 (405)
T KOG1273|consen   65 VRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDS----PVWGAQWHPRK---RNKCVATIMEESPVVIDFS  137 (405)
T ss_pred             ccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccC----ccceeeecccc---CCeEEEEEecCCcEEEEec
Confidence            3569999999999999999999999999999988765542211    11100001110   0000000000 00000000


Q ss_pred             eeccCCccccc-----cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCC-ccEEEEEEcCCCCEEEEee
Q psy16881        106 VYGQDSETVGR-----HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT-RYVTCCTFSCDDSLLASGS  179 (222)
Q Consensus       106 ~~~~~~~~~~~-----h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-~~V~~~~~s~~~~~l~s~s  179 (222)
                        ......+..     -.....+..|++.|+++++|..-|.+-++|..+.+++..+.... ..|..+.++..|+.|+.-+
T Consensus       138 --~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNt  215 (405)
T KOG1273|consen  138 --DPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINT  215 (405)
T ss_pred             --CCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEec
Confidence              000000000     01111223588999999999999999999999999998887666 7799999999999999999


Q ss_pred             CCCeEEEEeCC
Q psy16881        180 NDKTVTIWDML  190 (222)
Q Consensus       180 ~D~~i~lwd~~  190 (222)
                      .|+.|+.|++.
T Consensus       216 sDRvIR~ye~~  226 (405)
T KOG1273|consen  216 SDRVIRTYEIS  226 (405)
T ss_pred             CCceEEEEehh
Confidence            99999999973

>KOG0305|consensus

Probab=99.57  E-value=1.2e-13  Score=115.88  Aligned_cols=158  Identities=23%  Similarity=0.390  Sum_probs=111.6

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCccccee---eeeeeeeEee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF---STFVKQIIPT  102 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  102 (222)
                      |...|..+.|++|+++||+|+.|+.+.|||..+......+  ..|... +-   .+.+++.......   ...+..+..|
T Consensus       300 H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~--~~H~aA-VK---A~awcP~q~~lLAsGGGs~D~~i~fw  373 (484)
T KOG0305|consen  300 HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF--TEHTAA-VK---ALAWCPWQSGLLATGGGSADRCIKFW  373 (484)
T ss_pred             ccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE--ecccee-ee---EeeeCCCccCceEEcCCCcccEEEEE
Confidence            4777999999999999999999999999998555444333  122211 11   1223332222221   1223344445


Q ss_pred             eeeeeccCCccccccCCCEEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeC
Q psy16881        103 RVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSG--SVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN  180 (222)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg--~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~  180 (222)
                      ++. .+.....+ .....|..+.|++..+.++++  ..++.|.||++.+.+.+..+.+|...|-.++++|+|..|++|+.
T Consensus       374 n~~-~g~~i~~v-dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~  451 (484)
T KOG0305|consen  374 NTN-TGARIDSV-DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAA  451 (484)
T ss_pred             EcC-CCcEeccc-ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecc
Confidence            432 11111111 246789999999998766665  44678999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCC
Q psy16881        181 DKTVTIWDMLA  191 (222)
Q Consensus       181 D~~i~lwd~~~  191 (222)
                      |.++++|++-.
T Consensus       452 DETlrfw~~f~  462 (484)
T KOG0305|consen  452 DETLRFWNLFD  462 (484)
T ss_pred             cCcEEeccccC
Confidence            99999999854

>KOG1007|consensus

Probab=99.57  E-value=1.9e-13  Score=105.73  Aligned_cols=184  Identities=20%  Similarity=0.304  Sum_probs=116.3

Q ss_pred             CCcCCCCCCCCCcccc-eEEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCce-EEeeccCCCcc--eeec
Q psy16881          1 MHEFPMGDGPSLFNGT-ELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSL-IMETNDRGHTQ--GRIE   76 (222)
Q Consensus         1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~-~~~~~~~~~~~--~~~~   76 (222)
                      .|++|.+=+++=..-. ++...+-.++ +.|.|+.|-|++..+++- .|+.|.+|++..... +.+....+...  -.+.
T Consensus        97 iw~ipe~~~~S~~~tlE~v~~Ldteav-g~i~cvew~Pns~klasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ft  174 (370)
T KOG1007|consen   97 IWQIPEPLGQSNSSTLECVASLDTEAV-GKINCVEWEPNSDKLASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFT  174 (370)
T ss_pred             EEecccccCccccchhhHhhcCCHHHh-CceeeEEEcCCCCeeEEe-ccCceEEEEcccCcchheeecccccccccceec
Confidence            3677776666211111 1111222333 489999999999988874 599999999986544 33332111111  1111


Q ss_pred             cceecCccCC-cccceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC-ceE
Q psy16881         77 GWGRVPACPL-CRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSL-TCI  153 (222)
Q Consensus        77 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~-~~~  153 (222)
                      +-.   .++- ....+..........|+.....+....-..|...|..+.|+|+.+ ++++++.||.|+|||++.- ..+
T Consensus       175 sg~---WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv  251 (370)
T KOG1007|consen  175 SGA---WSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV  251 (370)
T ss_pred             ccc---cCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc
Confidence            111   1111 111222223333444443322222222235788899999999876 7999999999999999854 568


Q ss_pred             EEeccCCccEEEEEEcC-CCCEEEEeeCCCeEEEEeC
Q psy16881        154 KTLESHTRYVTCCTFSC-DDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       154 ~~~~~~~~~V~~~~~s~-~~~~l~s~s~D~~i~lwd~  189 (222)
                      .++.+|..+|+++.|+| ...+|.+++.|..+.+|..
T Consensus       252 ~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  252 QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA  288 (370)
T ss_pred             cccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence            89999999999999998 4678889999999999986

>KOG0639|consensus

Probab=99.56  E-value=4.5e-14  Score=116.30  Aligned_cols=161  Identities=20%  Similarity=0.244  Sum_probs=108.5

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCccee--eccceecCccCCcccceeeeeeeeeEeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGR--IEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      |++.|..+.+|..-+.+.||+. |-|+|||+.......   +-.+.+..  -..........+.+............+|+
T Consensus       418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~---PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD  493 (705)
T KOG0639|consen  418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKS---PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD  493 (705)
T ss_pred             cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCC---ccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence            4888999999999999999875 789999997542110   00000000  00000001112223333333444455555


Q ss_pred             eeeeccCC-ccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCC
Q psy16881        104 VGVYGQDS-ETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDK  182 (222)
Q Consensus       104 ~~~~~~~~-~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~  182 (222)
                      ........ ..+....-.+..++.+|+.+..+++..||.|.|||+.++..+..+++|.+-+.|+.++.+|..|-||+-|.
T Consensus       494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn  573 (705)
T KOG0639|consen  494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN  573 (705)
T ss_pred             ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence            32221111 11111223456688899999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCC
Q psy16881        183 TVTIWDML  190 (222)
Q Consensus       183 ~i~lwd~~  190 (222)
                      +++-||++
T Consensus       574 tvRcWDlr  581 (705)
T KOG0639|consen  574 TVRCWDLR  581 (705)
T ss_pred             ceeehhhh
Confidence            99999984

>KOG1063|consensus

Probab=99.53  E-value=1.8e-13  Score=116.20  Aligned_cols=139  Identities=27%  Similarity=0.488  Sum_probs=110.0

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCe-----EEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDET-----VTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFS   93 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (222)
                      ++.+|   +-.|.+++.+|+|+++|+++....     |++|..                                     
T Consensus       520 KLYGH---GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t-------------------------------------  559 (764)
T KOG1063|consen  520 KLYGH---GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNT-------------------------------------  559 (764)
T ss_pred             HhccC---ceeEEEEEecCCCCEEeehhhhCCccceEEEEEec-------------------------------------
Confidence            45666   788999999999999999986543     334432                                     


Q ss_pred             eeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc----eEEEeccCCccEEEEEEc
Q psy16881         94 TFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT----CIKTLESHTRYVTCCTFS  169 (222)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~----~~~~~~~~~~~V~~~~~s  169 (222)
                                 ..|.+.. .+..|.-.|+.++|+|++++|++++.|.++.+|......    .....+.|+.-|+++.|+
T Consensus       560 -----------~~W~~~~-~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~  627 (764)
T KOG1063|consen  560 -----------ANWLQVQ-ELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWS  627 (764)
T ss_pred             -----------cchhhhh-eecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccC
Confidence                       1222222 456799999999999999999999999999999764221    123467899999999999


Q ss_pred             CCCCEEEEeeCCCeEEEEeCC--------------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        170 CDDSLLASGSNDKTVTIWDML--------------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       170 ~~~~~l~s~s~D~~i~lwd~~--------------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      |++.+++|+|.|+++++|...                                ..+++.|-+.|.|.+|..+
T Consensus       628 pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  628 PDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             cccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            999999999999999999752                                2367888899999999866

>KOG1274|consensus

Probab=99.52  E-value=1.7e-12  Score=113.46  Aligned_cols=183  Identities=19%  Similarity=0.316  Sum_probs=125.8

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc-eEEeeccCCCcceeeccceecCccCCcccceeee-eeeeeEeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS-LIMETNDRGHTQGRIEGWGRVPACPLCRTRVFST-FVKQIIPTRV  104 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  104 (222)
                      ..--..|+|.|+|++|.+++.||.|++|+.-... ......   .....+.+.+.      ....+... ....+.....
T Consensus        13 t~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~---~~g~~v~~ia~------~s~~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   13 TGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID---ISGELVSSIAC------YSNHFLTGSEQNTVLRYKF   83 (933)
T ss_pred             cCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh---ccCceeEEEee------cccceEEeeccceEEEeeC
Confidence            3446779999999999999999999999754321 110000   00011111000      00011111 1111111110


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeE
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTV  184 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i  184 (222)
                       ..+.....+...+-++++++++.+|++++.|+.|=.|++-+..+......+.+|..+|.++.|+|.+.+||+.+.||++
T Consensus        84 -ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v  162 (933)
T KOG1274|consen   84 -PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKV  162 (933)
T ss_pred             -CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceE
Confidence             1111222344567889999999999999999999999999998887788899999999999999999999999999999


Q ss_pred             EEEeCC-------------------------------CCeEEEeeCCCcEEEEeCCCC-ccccCCCC
Q psy16881        185 TIWDML-------------------------------ATLLASGSNDKTVTIWDMRGN-LSVDVPLN  219 (222)
Q Consensus       185 ~lwd~~-------------------------------~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~  219 (222)
                      ++||+.                               +..++....|+.|++|+..++ .+++++++
T Consensus       163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~  229 (933)
T KOG1274|consen  163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK  229 (933)
T ss_pred             EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc
Confidence            999983                               235677778999999999866 46777765

>KOG0294|consensus

Probab=99.52  E-value=6.1e-13  Score=103.93  Aligned_cols=164  Identities=18%  Similarity=0.304  Sum_probs=104.0

Q ss_pred             eeeeccceEEEEEcCCCC--eEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccC-------C-------
Q psy16881         23 SVHIGSNMRCVRFSPDTR--LLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACP-------L-------   86 (222)
Q Consensus        23 ~~~~~~~v~~l~~spdg~--~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-------   86 (222)
                      -.+|.+.|+++.|++...  .|++|+.||.|.+|+..+..++...  .+|... ++...-.|...       +       
T Consensus        79 ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~sl--K~H~~~-Vt~lsiHPS~KLALsVg~D~~lr~WN  155 (362)
T KOG0294|consen   79 LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSL--KAHKGQ-VTDLSIHPSGKLALSVGGDQVLRTWN  155 (362)
T ss_pred             eeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeee--cccccc-cceeEecCCCceEEEEcCCceeeeeh
Confidence            355689999999998875  8999999999999999988766554  222222 11111111000       0       


Q ss_pred             ---c------------ccceeeeeeeeeEe---eeeeeeccCC-ccccc--cCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy16881         87 ---C------------RTRVFSTFVKQIIP---TRVGVYGQDS-ETVGR--HTSAVTSVRFNHKSSLLVSGSVDKTVKLW  145 (222)
Q Consensus        87 ---~------------~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~--h~~~i~~l~~~~~~~~l~sg~~dg~I~iw  145 (222)
                         .            ....+....+....   ..+..+.... ..+..  ....+.++-|. ++.++++|..|+.|++|
T Consensus       156 LV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~  234 (362)
T KOG0294|consen  156 LVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLK  234 (362)
T ss_pred             hhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEe
Confidence               0            00001110000000   0000110000 01110  12346666664 46789999999999999


Q ss_pred             eCCCCceEEEeccCCccEEEEEE--cCCCCEEEEeeCCCeEEEEeCC
Q psy16881        146 DVPSLTCIKTLESHTRYVTCCTF--SCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       146 d~~~~~~~~~~~~~~~~V~~~~~--s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      |..+..+...+.+|...|..+.+  .|.+.+|+|+|.||.|++||+.
T Consensus       235 D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  235 DTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID  281 (362)
T ss_pred             ccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence            99999999999999999999885  4678999999999999999986

>KOG0321|consensus

Probab=99.52  E-value=1.9e-13  Score=115.29  Aligned_cols=153  Identities=24%  Similarity=0.431  Sum_probs=109.4

Q ss_pred             CCcccceEEEe-------eeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCc
Q psy16881         11 SLFNGTELILR-------GSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPA   83 (222)
Q Consensus        11 ~~~~~~~~~~~-------~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (222)
                      -||+-+...++       .-.-|-..|-.+.+-|....|++++.|.++++||++..++...-                  
T Consensus        77 ~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~------------------  138 (720)
T KOG0321|consen   77 ILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR------------------  138 (720)
T ss_pred             eeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce------------------
Confidence            45665544443       22335677999999996668999999999999999765433110                  


Q ss_pred             cCCcccceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCc--eE-------
Q psy16881         84 CPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLT--CI-------  153 (222)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~--~~-------  153 (222)
                                                   ..-+|...|.+++|.+.+ ..|++|+.||.|.|||++-..  .+       
T Consensus       139 -----------------------------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~  189 (720)
T KOG0321|consen  139 -----------------------------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRI  189 (720)
T ss_pred             -----------------------------eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhh
Confidence                                         123689999999999887 489999999999999986321  00       


Q ss_pred             ------------------EEeccCCccEEE---EEEcCCCCEEEEeeC-CCeEEEEeCC---------------------
Q psy16881        154 ------------------KTLESHTRYVTC---CTFSCDDSLLASGSN-DKTVTIWDML---------------------  190 (222)
Q Consensus       154 ------------------~~~~~~~~~V~~---~~~s~~~~~l~s~s~-D~~i~lwd~~---------------------  190 (222)
                                        ....++...|.+   +.+..|...||++++ |+.|++||++                     
T Consensus       190 ~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~sk  269 (720)
T KOG0321|consen  190 YGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSK  269 (720)
T ss_pred             hccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCccc
Confidence                              011233334554   556678899999887 9999999994                     


Q ss_pred             -------------CC-eEEEeeCCCcEEEEeCCCC
Q psy16881        191 -------------AT-LLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       191 -------------~~-~l~s~~~d~~i~iwd~~~~  211 (222)
                                   ++ ++|++. |+.|++|++.+.
T Consensus       270 rs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~  303 (720)
T KOG0321|consen  270 RSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSL  303 (720)
T ss_pred             ceeeeEEEEecCCCCeEEEEec-CCcEEEEecccc
Confidence                         23 455555 999999999754

>KOG2055|consensus

Probab=99.51  E-value=2.2e-12  Score=105.23  Aligned_cols=198  Identities=18%  Similarity=0.237  Sum_probs=129.3

Q ss_pred             CCCCCCcccceEEEe------eeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceE--EeeccCCCcceeeccc
Q psy16881          7 GDGPSLFNGTELILR------GSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLI--METNDRGHTQGRIEGW   78 (222)
Q Consensus         7 ~~~~~~~~~~~~~~~------~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~   78 (222)
                      -+..+|.-|+....+      .++.+ +.|+++.|+|...+|++++.||+++||.++.....  .....   ...++.. 
T Consensus       188 s~s~~Lp~~tl~~krlkDaNa~~ps~-~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l---~~fPi~~-  262 (514)
T KOG2055|consen  188 SRSKLLPPGTLNIKRLKDANAAHPSH-GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL---EKFPIQK-  262 (514)
T ss_pred             cccccCCCceeeeEeecccccCCcCc-CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee---ccCccce-
Confidence            355677778765332      23444 56999999999999999999999999988743211  11100   0000000 


Q ss_pred             eecCccCCcccceeeeeeeeeE-eeeeee-eccCCcccccc-CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q psy16881         79 GRVPACPLCRTRVFSTFVKQII-PTRVGV-YGQDSETVGRH-TSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKT  155 (222)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~h-~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~  155 (222)
                        ..+.+......+........ .++... .......+.++ ...+....+++++++++..+..|.|-+...++++.+.+
T Consensus       263 --a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s  340 (514)
T KOG2055|consen  263 --AEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITS  340 (514)
T ss_pred             --eeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhe
Confidence              00111111111111111111 111100 00011111222 34567788899999999999999999999999998888


Q ss_pred             eccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        156 LESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML------------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       156 ~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~------------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      ++. ...|..++|+.+++.|+..+.+|.|.+||+.                        ..++|+||..|.++|||....
T Consensus       341 ~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~  419 (514)
T KOG2055|consen  341 FKI-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC  419 (514)
T ss_pred             eee-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchh
Confidence            765 4669999999999999999999999999984                        358999999999999997755


Q ss_pred             c
Q psy16881        212 L  212 (222)
Q Consensus       212 ~  212 (222)
                      .
T Consensus       420 ~  420 (514)
T KOG2055|consen  420 F  420 (514)
T ss_pred             h
Confidence            4

>KOG4283|consensus

Probab=99.51  E-value=9.1e-13  Score=102.35  Aligned_cols=160  Identities=21%  Similarity=0.352  Sum_probs=104.3

Q ss_pred             eeccceEEEEEcCCC-CeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         25 HIGSNMRCVRFSPDT-RLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        25 ~~~~~v~~l~~spdg-~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      .|.=.|..+.|.|-. -.+.++|-|.++++||..+.+....+++.+.    +-..+..+..-..-..+.+....++..-+
T Consensus        99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~----VYshamSp~a~sHcLiA~gtr~~~VrLCD  174 (397)
T KOG4283|consen   99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGK----VYSHAMSPMAMSHCLIAAGTRDVQVRLCD  174 (397)
T ss_pred             cceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCce----eehhhcChhhhcceEEEEecCCCcEEEEe
Confidence            345567777777744 4678889999999999987766655543221    11111111111011111111111222222


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC-ceEEE--------------eccCCccEEEEE
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSL-TCIKT--------------LESHTRYVTCCT  167 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~-~~~~~--------------~~~~~~~V~~~~  167 (222)
                      + ..+.-...+.+|...|.++.|+|... .|++|+.||.||+||++.- .|...              -.+|...|..++
T Consensus       175 i-~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla  253 (397)
T KOG4283|consen  175 I-ASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA  253 (397)
T ss_pred             c-cCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee
Confidence            1 11222245778999999999999887 6999999999999999743 23222              235777799999


Q ss_pred             EcCCCCEEEEeeCCCeEEEEeC
Q psy16881        168 FSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       168 ~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      |..++.++++.+.|..+++|+.
T Consensus       254 ~tSd~~~l~~~gtd~r~r~wn~  275 (397)
T KOG4283|consen  254 WTSDARYLASCGTDDRIRVWNM  275 (397)
T ss_pred             ecccchhhhhccCccceEEeec
Confidence            9999999999999999999997

>KOG1009|consensus

Probab=99.50  E-value=2.3e-13  Score=109.26  Aligned_cols=134  Identities=30%  Similarity=0.496  Sum_probs=105.2

Q ss_pred             eeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         24 VHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        24 ~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      .+|...|++++|+|+|++||+|+++|+|.+|...+....    +... +.                    ....  ..|.
T Consensus        62 s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~----~~d~-e~--------------------~~~k--e~w~  114 (434)
T KOG1009|consen   62 SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF----DADT-EA--------------------DLNK--EKWV  114 (434)
T ss_pred             cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc----cccc-hh--------------------hhCc--cceE
Confidence            566788999999999999999999999999986541110    0000 00                    0000  0000


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKT  183 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~  183 (222)
                      +      ...+.+|...|..++|+++++++++++.|+.+++||+..++.+..+..|..+|.-++|+|.++++++-+.|+.
T Consensus       115 v------~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~  188 (434)
T KOG1009|consen  115 V------KKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRH  188 (434)
T ss_pred             E------EEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcc
Confidence            0      0134568999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             EEEEeCC
Q psy16881        184 VTIWDML  190 (222)
Q Consensus       184 i~lwd~~  190 (222)
                      .+.+.+.
T Consensus       189 ~~~~~~~  195 (434)
T KOG1009|consen  189 PEGFSAK  195 (434)
T ss_pred             cceeeee
Confidence            7777764

>KOG1188|consensus

Probab=99.50  E-value=1.1e-12  Score=103.37  Aligned_cols=158  Identities=18%  Similarity=0.218  Sum_probs=99.3

Q ss_pred             ccceEEEEEcC--CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeee------eeee
Q psy16881         27 GSNMRCVRFSP--DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFST------FVKQ   98 (222)
Q Consensus        27 ~~~v~~l~~sp--dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~   98 (222)
                      .+.++-++|..  ....|.+++.||+|++||+............++...++..++     ..|+......      ....
T Consensus        70 ~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld-----~nck~~ii~~GtE~~~s~A~  144 (376)
T KOG1188|consen   70 PATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLD-----LNCKKNIIACGTELTRSDAS  144 (376)
T ss_pred             CCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEee-----ccCcCCeEEeccccccCceE
Confidence            45566677765  456799999999999999876543332222222212222111     1112111111      1112


Q ss_pred             eEeeeeeeeccCC-ccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCc---eEEEeccCCccEEEEEEcCCC-
Q psy16881         99 IIPTRVGVYGQDS-ETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLT---CIKTLESHTRYVTCCTFSCDD-  172 (222)
Q Consensus        99 ~~~~~~~~~~~~~-~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~---~~~~~~~~~~~V~~~~~s~~~-  172 (222)
                      +..|++..+.+.. .-.+.|...|++++|+|.. ++|+||+.||.|.|+|++...   .+...-.|...|.++.|+..+ 
T Consensus       145 v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~y  224 (376)
T KOG1188|consen  145 VVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKY  224 (376)
T ss_pred             EEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCc
Confidence            3344443333322 2245699999999999987 699999999999999997532   122233456679999998776 


Q ss_pred             CEEEEeeCCCeEEEEeC
Q psy16881        173 SLLASGSNDKTVTIWDM  189 (222)
Q Consensus       173 ~~l~s~s~D~~i~lwd~  189 (222)
                      ..|.+-+..++..+|++
T Consensus       225 krI~clTH~Etf~~~el  241 (376)
T KOG1188|consen  225 KRIMCLTHMETFAIYEL  241 (376)
T ss_pred             ceEEEEEccCceeEEEc
Confidence            45888888999999986

>KOG1034|consensus

Probab=99.49  E-value=8.7e-14  Score=109.17  Aligned_cols=137  Identities=25%  Similarity=0.491  Sum_probs=108.9

Q ss_pred             ccceEEEEEcCCC-CeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         27 GSNMRCVRFSPDT-RLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        27 ~~~v~~l~~spdg-~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      +..|+.|.|.|+. ++|+++|.|.+||+|++.+..++..+.                                       
T Consensus       135 G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG---------------------------------------  175 (385)
T KOG1034|consen  135 GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG---------------------------------------  175 (385)
T ss_pred             CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec---------------------------------------
Confidence            8889999999975 689999999999999998776665431                                       


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc------eEE----------------------Eec
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT------CIK----------------------TLE  157 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~------~~~----------------------~~~  157 (222)
                             .+++|.+.|.++.|+.+|.++++++.|-+|++|+++..+      +..                      +-.
T Consensus       176 -------G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d  248 (385)
T KOG1034|consen  176 -------GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD  248 (385)
T ss_pred             -------ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence                   235799999999999999999999999999999987211      110                      112


Q ss_pred             cCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC---------------------------------------CCeEEEee
Q psy16881        158 SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML---------------------------------------ATLLASGS  198 (222)
Q Consensus       158 ~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~---------------------------------------~~~l~s~~  198 (222)
                      -|..+|.|+.|-  |.++++=|-++.|..|-..                                       ..+||.|.
T Consensus       249 iHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn  326 (385)
T KOG1034|consen  249 IHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN  326 (385)
T ss_pred             cccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc
Confidence            366667777765  6788888888899999751                                       24689999


Q ss_pred             CCCcEEEEeCCCC
Q psy16881        199 NDKTVTIWDMRGN  211 (222)
Q Consensus       199 ~d~~i~iwd~~~~  211 (222)
                      +.|++.+|||+.+
T Consensus       327 q~g~v~vwdL~~~  339 (385)
T KOG1034|consen  327 QSGKVYVWDLDNN  339 (385)
T ss_pred             CCCcEEEEECCCC
Confidence            9999999999854

>KOG1408|consensus

Probab=99.49  E-value=2e-12  Score=110.71  Aligned_cols=93  Identities=20%  Similarity=0.348  Sum_probs=80.2

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc---CCccEEEEEEcCCCCEEEEeeCCCeEEEEeCCC----
Q psy16881        119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES---HTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA----  191 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~---~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~----  191 (222)
                      ..+..++..|..+++++++.|..|+|||+.+++..+.|++   |+...-.+..+|.|.+||+.+.|+++.++|+.+    
T Consensus       597 tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv  676 (1080)
T KOG1408|consen  597 TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV  676 (1080)
T ss_pred             ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh
Confidence            5577889999999999999999999999999999998876   434455788999999999999999999999841    


Q ss_pred             -------------------CeEEEeeCCCcEEEEeCCCC
Q psy16881        192 -------------------TLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       192 -------------------~~l~s~~~d~~i~iwd~~~~  211 (222)
                                         ..|+|.+-|+.|-+|.+...
T Consensus       677 A~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  677 AQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             hhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence                               35889999999999987543

>KOG0649|consensus

Probab=99.49  E-value=1.1e-12  Score=99.39  Aligned_cols=72  Identities=18%  Similarity=0.294  Sum_probs=64.8

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      ..|+.+.+.|..+-++.++.|+.+.-||+++++...++.+|+++|.++..-.....|.+|++||++++||.+
T Consensus       115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~k  186 (325)
T KOG0649|consen  115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTK  186 (325)
T ss_pred             CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEecc
Confidence            468899999988878888889999999999999999999999999999985566678899999999999985

>KOG1445|consensus

Probab=99.49  E-value=1.6e-13  Score=115.93  Aligned_cols=151  Identities=29%  Similarity=0.402  Sum_probs=111.8

Q ss_pred             eeeccceEEEEEcC-CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee
Q psy16881         24 VHIGSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT  102 (222)
Q Consensus        24 ~~~~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (222)
                      +.|++.|..+.|+| +..+|||+|.|..|+||.+..+.          .+.. .          .               
T Consensus        76 ~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~----------~q~L-S----------a---------------  119 (1012)
T KOG1445|consen   76 AAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGH----------SQKL-S----------A---------------  119 (1012)
T ss_pred             ecccceeeccCccccchhhhhcccCCCeeEEEecCCCc----------cccc-C----------C---------------
Confidence            44689999999998 55689999999999999986321          1100 0          0               


Q ss_pred             eeeeeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCC
Q psy16881        103 RVGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSND  181 (222)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D  181 (222)
                             ....+.+-.-.+.++.|+|... +++++ ..|+++|||+.+++.+.++.+|.+.|.++.|+-||.+|++++.|
T Consensus       120 -------pe~~~g~~~~~vE~l~fHpTaDgil~s~-a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKd  191 (1012)
T KOG1445|consen  120 -------PEIDVGGGNVIVECLRFHPTADGILASG-AHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKD  191 (1012)
T ss_pred             -------cceeecCCceEEEEeecccCcCceEEec-cCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCC
Confidence                   0001122234578999998764 55555 47999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCC-------------------------CeEEEeeCC----CcEEEEeCC--CCccccCCC
Q psy16881        182 KTVTIWDMLA-------------------------TLLASGSND----KTVTIWDMR--GNLSVDVPL  218 (222)
Q Consensus       182 ~~i~lwd~~~-------------------------~~l~s~~~d----~~i~iwd~~--~~~~~~~~~  218 (222)
                      +.|+|||.+.                         ..|++.+.+    +.+++||.+  +...+.+.+
T Consensus       192 kqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tlel  259 (1012)
T KOG1445|consen  192 KQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLEL  259 (1012)
T ss_pred             cceEEeCCccCCCccccccccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEe
Confidence            9999999751                         135555543    579999988  334444443

>KOG1310|consensus

Probab=99.48  E-value=1.4e-13  Score=114.43  Aligned_cols=140  Identities=29%  Similarity=0.455  Sum_probs=111.1

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ   98 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (222)
                      +|.+|   .+=|.|+.|+.+|.+|++||+|-.+.|||+-....+...                                 
T Consensus        45 eL~GH---~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI---------------------------------   88 (758)
T KOG1310|consen   45 ELTGH---TGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI---------------------------------   88 (758)
T ss_pred             hhccc---cceecceeecCCCCEEeecCCcceEEeecchhcceeeee---------------------------------
Confidence            44555   777999999999999999999999999997532221111                                 


Q ss_pred             eEeeeeeeeccCCccccccCCCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCc----------eEEEeccCCccEEEE
Q psy16881         99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKS--SLLVSGSVDKTVKLWDVPSLT----------CIKTLESHTRYVTCC  166 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~--~~l~sg~~dg~I~iwd~~~~~----------~~~~~~~~~~~V~~~  166 (222)
                                     -.+|..-|.++.|-|..  +.+++|..|..|+++|+.+.+          ....+..|...|.-+
T Consensus        89 ---------------~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKri  153 (758)
T KOG1310|consen   89 ---------------STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRI  153 (758)
T ss_pred             ---------------ecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhhe
Confidence                           02588899999997653  589999999999999997421          223445677888888


Q ss_pred             EEcCCC-CEEEEeeCCCeEEEEeCC----------------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        167 TFSCDD-SLLASGSNDKTVTIWDML----------------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       167 ~~s~~~-~~l~s~s~D~~i~lwd~~----------------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      +--|.+ +.+-++++||+|+.+|++                                  ..+|+.|+.|-..++||.|
T Consensus       154 a~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  154 ATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             ecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            888888 677799999999999985                                  3579999999999999954

>KOG0268|consensus

Probab=99.47  E-value=2.8e-13  Score=107.55  Aligned_cols=156  Identities=21%  Similarity=0.313  Sum_probs=98.5

Q ss_pred             ccceEEEEEcCCCC-eEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee-eeEeeee
Q psy16881         27 GSNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK-QIIPTRV  104 (222)
Q Consensus        27 ~~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  104 (222)
                      -.+|.++.|+|-.. +|++++.|+.|.|||+.....+...-..-...    .   +.+.+. ...+.+...+ ..-.-+.
T Consensus       187 ~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN----~---IswnPe-afnF~~a~ED~nlY~~Dm  258 (433)
T KOG0268|consen  187 ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN----T---ICWNPE-AFNFVAANEDHNLYTYDM  258 (433)
T ss_pred             CCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc----c---eecCcc-ccceeeccccccceehhh
Confidence            35688999999765 67788899999999998765443221000000    0   111110 0000000000 0000011


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc-CCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES-HTRYVTCCTFSCDDSLLASGSNDKT  183 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~-~~~~V~~~~~s~~~~~l~s~s~D~~  183 (222)
                      ........+..+|...|..+.|+|.|+.+++|+.|++|+||..+.+........ --+.|.|+.||.|.++|++||+|+.
T Consensus       259 R~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~n  338 (433)
T KOG0268|consen  259 RNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGN  338 (433)
T ss_pred             hhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcc
Confidence            111122345567899999999999999999999999999999886543222111 1134899999999999999999999


Q ss_pred             EEEEeCC
Q psy16881        184 VTIWDML  190 (222)
Q Consensus       184 i~lwd~~  190 (222)
                      |++|-..
T Consensus       339 vRlWka~  345 (433)
T KOG0268|consen  339 VRLWKAK  345 (433)
T ss_pred             eeeeecc
Confidence            9999753

>KOG2055|consensus

Probab=99.47  E-value=6.5e-12  Score=102.56  Aligned_cols=170  Identities=16%  Similarity=0.219  Sum_probs=110.6

Q ss_pred             ccceEEEeeeeee-ccceEEEEEcCCCC-eEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccce
Q psy16881         14 NGTELILRGSVHI-GSNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRV   91 (222)
Q Consensus        14 ~~~~~~~~~~~~~-~~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (222)
                      +|+-..+.++.|+ +.+|.+.+|.|+|+ .+++++.-.-++.||+.+.....-....+.....+..|..   +......+
T Consensus       243 DGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeV---Shd~~fia  319 (514)
T KOG2055|consen  243 DGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEV---SHDSNFIA  319 (514)
T ss_pred             cCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEe---cCCCCeEE
Confidence            3444444455554 77899999999999 8999999999999999876554433333333322332221   11112222


Q ss_pred             eeeeeeeeEeeeeeeeccC-CccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCc-cEEEEEEc
Q psy16881         92 FSTFVKQIIPTRVGVYGQD-SETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTR-YVTCCTFS  169 (222)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~-~V~~~~~s  169 (222)
                      .......+....  ....+ ...+ +-.+.|..+.|+.+++.++..+.+|.|.+||+++..++..+..... .=++++.|
T Consensus       320 ~~G~~G~I~lLh--akT~eli~s~-KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S  396 (514)
T KOG2055|consen  320 IAGNNGHIHLLH--AKTKELITSF-KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCIS  396 (514)
T ss_pred             EcccCceEEeeh--hhhhhhhhee-eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeec
Confidence            222222221110  01111 1111 2356788999999999998888999999999999999988864322 12567888


Q ss_pred             CCCCEEEEeeCCCeEEEEeC
Q psy16881        170 CDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       170 ~~~~~l~s~s~D~~i~lwd~  189 (222)
                      +++.++|+||..|.|.|||.
T Consensus       397 ~ng~ylA~GS~~GiVNIYd~  416 (514)
T KOG2055|consen  397 LNGSYLATGSDSGIVNIYDG  416 (514)
T ss_pred             CCCceEEeccCcceEEEecc
Confidence            99999999999999999994

>KOG1009|consensus

Probab=99.47  E-value=1.5e-12  Score=104.74  Aligned_cols=135  Identities=30%  Similarity=0.465  Sum_probs=102.4

Q ss_pred             ccceEEEEEcCCCC-eEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         27 GSNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        27 ~~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      ..+|..+.|.+++. +||||+.|..|++|.+.....       +.....+.                             
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~-------~~~~~~V~-----------------------------   56 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEP-------GGGDMKVE-----------------------------   56 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCC-------CCCceeEE-----------------------------
Confidence            46799999998876 999999999999998753211       00000000                             


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC--------C--------CceEEEeccCCccEEEEEEc
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP--------S--------LTCIKTLESHTRYVTCCTFS  169 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~--------~--------~~~~~~~~~~~~~V~~~~~s  169 (222)
                          -...+.+|...|+++.|+|+|+.++||+.+|.|.+|--.        +        ......+.+|.+.|..++|+
T Consensus        57 ----y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws  132 (434)
T KOG1009|consen   57 ----YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS  132 (434)
T ss_pred             ----EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc
Confidence                001345799999999999999999999999999999654        2        11234556798999999999


Q ss_pred             CCCCEEEEeeCCCeEEEEeCCCCeEEEeeCCC
Q psy16881        170 CDDSLLASGSNDKTVTIWDMLATLLASGSNDK  201 (222)
Q Consensus       170 ~~~~~l~s~s~D~~i~lwd~~~~~l~s~~~d~  201 (222)
                      |++..+++++-|..+++||+...++.++..|.
T Consensus       133 ~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh  164 (434)
T KOG1009|consen  133 PDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH  164 (434)
T ss_pred             CCCceeeeeeccceEEEEEeccceeEeecccc
Confidence            99999999999999999999766555554444

>KOG1063|consensus

Probab=99.47  E-value=3.1e-12  Score=108.88  Aligned_cols=99  Identities=26%  Similarity=0.439  Sum_probs=87.7

Q ss_pred             cccccCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEE
Q psy16881        113 TVGRHTSAVTSVRFNHKSSLLVSGSVDK-----TVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW  187 (222)
Q Consensus       113 ~~~~h~~~i~~l~~~~~~~~l~sg~~dg-----~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lw  187 (222)
                      ++-+|...|.+++.+|+++.++|++...     .|++|++.+-..++.+.+|+-.|+-+.|||+|++|++.|.|+++.+|
T Consensus       520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~  599 (764)
T KOG1063|consen  520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLY  599 (764)
T ss_pred             HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEee
Confidence            4568999999999999999999997644     49999998887788899999999999999999999999999999999


Q ss_pred             eCC---------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        188 DML---------------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       188 d~~---------------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      ...                           ..++|++|.|+++++|.....
T Consensus       600 ~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  600 EVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             eeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            752                           346999999999999987643

>KOG0321|consensus

Probab=99.46  E-value=5.1e-13  Score=112.68  Aligned_cols=137  Identities=26%  Similarity=0.470  Sum_probs=105.7

Q ss_pred             EEEcCC---CCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeecc
Q psy16881         33 VRFSPD---TRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQ  109 (222)
Q Consensus        33 l~~spd---g~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (222)
                      ..|++.   ..+|+.+..||.|.+||.+......+.                                           .
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee-------------------------------------------~   91 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEE-------------------------------------------R   91 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhh-------------------------------------------h
Confidence            456543   457999999999999987643211000                                           0


Q ss_pred             CCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE--eccCCccEEEEEEcCCC-CEEEEeeCCCeEEE
Q psy16881        110 DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKT--LESHTRYVTCCTFSCDD-SLLASGSNDKTVTI  186 (222)
Q Consensus       110 ~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~--~~~~~~~V~~~~~s~~~-~~l~s~s~D~~i~l  186 (222)
                      ....+..|...|-.+.|-|-...|++++.|.+++.||+++.+++..  +.+|+..|.+++|.+.. ..+++|+.||.|.|
T Consensus        92 ~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill  171 (720)
T KOG0321|consen   92 QLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL  171 (720)
T ss_pred             hhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence            0011234888899999988445899999999999999999888765  88999999999999865 57778999999999


Q ss_pred             EeCC-----------------------------------------------------CCeEEEeeC-CCcEEEEeCCCCc
Q psy16881        187 WDML-----------------------------------------------------ATLLASGSN-DKTVTIWDMRGNL  212 (222)
Q Consensus       187 wd~~-----------------------------------------------------~~~l~s~~~-d~~i~iwd~~~~~  212 (222)
                      ||++                                                     ...||++|. |+.|++||+++..
T Consensus       172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~  251 (720)
T KOG0321|consen  172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY  251 (720)
T ss_pred             EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence            9973                                                     135888887 9999999999653

>KOG0642|consensus

Probab=99.45  E-value=9.9e-13  Score=109.53  Aligned_cols=127  Identities=26%  Similarity=0.414  Sum_probs=99.3

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ   98 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (222)
                      +++.|   -.-|+.++|.|-...|++++.||+|.+|++.+.      .  .+...                       + 
T Consensus       289 tl~s~---~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~------~--~s~~~-----------------------~-  333 (577)
T KOG0642|consen  289 TLRSH---DDCIRALAFHPSEPVLITASEDGTLKLWNLQKA------K--KSAEK-----------------------D-  333 (577)
T ss_pred             eeecc---hhhhhhhhcCCCCCeEEEeccccchhhhhhccc------C--Ccccc-----------------------c-
Confidence            45555   677899999999999999999999999998430      0  00000                       0 


Q ss_pred             eEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC----------CceEEEeccCCccEEEEEE
Q psy16881         99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS----------LTCIKTLESHTRYVTCCTF  168 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~----------~~~~~~~~~~~~~V~~~~~  168 (222)
                      +         ...-.+.+|.++|.|+.+.+.+.++++|+-||+|+.|++..          ......+.||.+.|+.+++
T Consensus       334 ~---------epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~  404 (577)
T KOG0642|consen  334 V---------EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLAL  404 (577)
T ss_pred             e---------eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeee
Confidence            0         00113567999999999999999999999999999996531          1223467899999999999


Q ss_pred             cCCCCEEEEeeCCCeEEEEeC
Q psy16881        169 SCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       169 s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      |.....|++++.||++++|+.
T Consensus       405 s~~~~~Llscs~DgTvr~w~~  425 (577)
T KOG0642|consen  405 SSTKDRLLSCSSDGTVRLWEP  425 (577)
T ss_pred             cccccceeeecCCceEEeecc
Confidence            999889999999999999985

>KOG2919|consensus

Probab=99.44  E-value=2.1e-11  Score=95.87  Aligned_cols=198  Identities=22%  Similarity=0.334  Sum_probs=132.5

Q ss_pred             CCCCCcccceEEEeeeeeeccceEEEEEc-------CCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeecccee
Q psy16881          8 DGPSLFNGTELILRGSVHIGSNMRCVRFS-------PDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGR   80 (222)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-------pdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~   80 (222)
                      +++.++.=+......+   +..|-.-+|.       |+-.++|+.+.|.-|++||.-++.+...+....+.....-. ..
T Consensus        88 ~~~~~~~~~~~~r~~e---g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taA-hs  163 (406)
T KOG2919|consen   88 DGPLNFSKHLSYRYQE---GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAA-HS  163 (406)
T ss_pred             CCccccccceeEEecc---CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhh-ee
Confidence            3444444444444566   7777665554       67889999999999999999888766554333222221111 11


Q ss_pred             cCccCCcccceeeeeeeeeEeeeeeeeccCCc---c----ccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCce
Q psy16881         81 VPACPLCRTRVFSTFVKQIIPTRVGVYGQDSE---T----VGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTC  152 (222)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~  152 (222)
                      +.++++. ...++.....+..-+....+....   +    ..+..+-|.+++|+|... .++.|+....+-||.-..+..
T Consensus       164 L~Fs~DG-eqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p  242 (406)
T KOG2919|consen  164 LQFSPDG-EQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP  242 (406)
T ss_pred             EEecCCC-CeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc
Confidence            2222222 223333333333322211111100   0    122356688999999874 899999999999987767778


Q ss_pred             EEEeccCCccEEEEEEcCCCCEEEEee-CCCeEEEEeCC---------------------------CCeEEEeeCCCcEE
Q psy16881        153 IKTLESHTRYVTCCTFSCDDSLLASGS-NDKTVTIWDML---------------------------ATLLASGSNDKTVT  204 (222)
Q Consensus       153 ~~~~~~~~~~V~~~~~s~~~~~l~s~s-~D~~i~lwd~~---------------------------~~~l~s~~~d~~i~  204 (222)
                      +..+-+|..-|+-+.|.++|+.|++|+ .|-+|..||++                           ...|++|+.||.|+
T Consensus       243 l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~  322 (406)
T KOG2919|consen  243 LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVR  322 (406)
T ss_pred             eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEE
Confidence            888889999999999999999999987 46789999985                           35799999999999


Q ss_pred             EEeCCC
Q psy16881        205 IWDMRG  210 (222)
Q Consensus       205 iwd~~~  210 (222)
                      +||++.
T Consensus       323 vwdlk~  328 (406)
T KOG2919|consen  323 VWDLKD  328 (406)
T ss_pred             EEecCC
Confidence            999983

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.44  E-value=4.9e-11  Score=95.69  Aligned_cols=183  Identities=15%  Similarity=0.122  Sum_probs=104.9

Q ss_pred             cceEEEEEcCCCCeEEE-ecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee-eEeeeee
Q psy16881         28 SNMRCVRFSPDTRLLAT-GGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ-IIPTRVG  105 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~t-gs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  105 (222)
                      ..+..++|+|+++.|++ ++.|++|++||+.+.+.+...... ...   ..   +...+............. ...++..
T Consensus        73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~---~~---~~~~~dg~~l~~~~~~~~~~~~~d~~  145 (300)
T TIGR03866        73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEP---EG---MAVSPDGKIVVNTSETTNMAHFIDTK  145 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCc---ce---EEECCCCCEEEEEecCCCeEEEEeCC
Confidence            34667899999997754 456899999999876655443211 000   00   011111111111111111 1111100


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceEEEeccCC-------ccEEEEEEcCCCCEEEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLV-SGSVDKTVKLWDVPSLTCIKTLESHT-------RYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~-sg~~dg~I~iwd~~~~~~~~~~~~~~-------~~V~~~~~s~~~~~l~s  177 (222)
                      . ....... .....+..++|+++++.++ ++..++.|++||+++++.+..+..+.       .....++|+|+++.++.
T Consensus       146 ~-~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~  223 (300)
T TIGR03866       146 T-YEIVDNV-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV  223 (300)
T ss_pred             C-CeEEEEE-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEE
Confidence            0 0000001 1123456789999998775 44569999999999888766553221       12346889999998655


Q ss_pred             -eeCCCeEEEEeCC----------------------CCeEEEe-eCCCcEEEEeCC-CCccccCCCC
Q psy16881        178 -GSNDKTVTIWDML----------------------ATLLASG-SNDKTVTIWDMR-GNLSVDVPLN  219 (222)
Q Consensus       178 -~s~D~~i~lwd~~----------------------~~~l~s~-~~d~~i~iwd~~-~~~~~~~~~~  219 (222)
                       ...+..+.+||+.                      ...|+++ +.++.|++||++ .+....++..
T Consensus       224 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~  290 (300)
T TIGR03866       224 ALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG  290 (300)
T ss_pred             EcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence             3456689999973                      2356665 568999999998 4444554443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2110|consensus

Probab=99.43  E-value=5.9e-11  Score=94.65  Aligned_cols=155  Identities=17%  Similarity=0.274  Sum_probs=103.2

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee--eeeEeeeee
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV--KQIIPTRVG  105 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  105 (222)
                      ..|.+|.+..  ++|++.-. ..|+|||+++...+.+.......+..+..   .+........++....  ..+...+ .
T Consensus        88 t~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~A---lS~n~~n~ylAyp~s~t~GdV~l~d-~  160 (391)
T KOG2110|consen   88 TSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCA---LSPNNANCYLAYPGSTTSGDVVLFD-T  160 (391)
T ss_pred             CceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEe---eccCCCCceEEecCCCCCceEEEEE-c
Confidence            4466666643  46666655 45999999998887665433222111111   1111111112221111  1222222 1


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCceEEEeccCCc--cEEEEEEcCCCCEEEEeeCCC
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKT-VKLWDVPSLTCIKTLESHTR--YVTCCTFSCDDSLLASGSNDK  182 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~-I~iwd~~~~~~~~~~~~~~~--~V~~~~~s~~~~~l~s~s~D~  182 (222)
                      ...+....+..|++.+-+++|+++|.++||+++.|+ ||++.+.+++.+.+|.-...  .|.+++|++++.+|++.|..+
T Consensus       161 ~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te  240 (391)
T KOG2110|consen  161 INLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE  240 (391)
T ss_pred             ccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC
Confidence            122333456789999999999999999999999998 78999999999998864433  478899999999999999999


Q ss_pred             eEEEEeC
Q psy16881        183 TVTIWDM  189 (222)
Q Consensus       183 ~i~lwd~  189 (222)
                      +|.+|-+
T Consensus       241 TVHiFKL  247 (391)
T KOG2110|consen  241 TVHIFKL  247 (391)
T ss_pred             eEEEEEe
Confidence            9999976

>KOG2106|consensus

Probab=99.43  E-value=2.6e-11  Score=100.18  Aligned_cols=181  Identities=23%  Similarity=0.301  Sum_probs=115.9

Q ss_pred             CcccceEEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccce
Q psy16881         12 LFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRV   91 (222)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (222)
                      |.+|..++.++|   +...--++..|+...++|++.|+.+++|+  +.+......  ...+....  +   +.+.. ..+
T Consensus       356 ~~~~f~~~v~gh---~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~--~~d~~~~~--~---fhpsg-~va  422 (626)
T KOG2106|consen  356 LENGFTLTVQGH---GDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI--IEDPAECA--D---FHPSG-VVA  422 (626)
T ss_pred             ecCCceEEEEec---ccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE--ecCceeEe--e---ccCcc-eEE
Confidence            344445566666   66777889999999999999999999998  444443321  00111111  1   11111 111


Q ss_pred             eeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eEEE-eccCCccEEEEEEc
Q psy16881         92 FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT-CIKT-LESHTRYVTCCTFS  169 (222)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~-~~~~-~~~~~~~V~~~~~s  169 (222)
                      ...........+.  ..+....+.....++++++|+|+|.++|.|+.|+.|.||.+.... .... -..+-++|+.+.||
T Consensus       423 ~Gt~~G~w~V~d~--e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS  500 (626)
T KOG2106|consen  423 VGTATGRWFVLDT--ETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWS  500 (626)
T ss_pred             EeeccceEEEEec--ccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeec
Confidence            1111111111110  001111112236789999999999999999999999999876432 2221 12233889999999


Q ss_pred             CCCCEEEEeeCCCeEEEEeCC-----------------------------------------CCeEEEeeCCCcEEEEe
Q psy16881        170 CDDSLLASGSNDKTVTIWDML-----------------------------------------ATLLASGSNDKTVTIWD  207 (222)
Q Consensus       170 ~~~~~l~s~s~D~~i~lwd~~-----------------------------------------~~~l~s~~~d~~i~iwd  207 (222)
                      +|+++|.+-|-|..|..|...                                         ..++|+|.+.++|+||.
T Consensus       501 ~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~  579 (626)
T KOG2106|consen  501 SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFS  579 (626)
T ss_pred             CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEc
Confidence            999999999999999999531                                         25789999999999995

>KOG0303|consensus

Probab=99.42  E-value=1e-11  Score=99.78  Aligned_cols=157  Identities=19%  Similarity=0.355  Sum_probs=116.0

Q ss_pred             CcCCCCCCCCCcccceEEEeeeeeeccceEEEEEcCCCC-eEEEecCCCeEEEEeCCCCceEEeeccCCCcceeecccee
Q psy16881          2 HEFPMGDGPSLFNGTELILRGSVHIGSNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGR   80 (222)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~   80 (222)
                      ||.|.+--+-=++---..|.+|   .-.|.-++|+|... +|++++.|++|.+|++.++..+.+.               
T Consensus       109 W~IPe~~l~~~ltepvv~L~gH---~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l---------------  170 (472)
T KOG0303|consen  109 WQIPENGLTRDLTEPVVELYGH---QRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITL---------------  170 (472)
T ss_pred             EECCCcccccCcccceEEEeec---ceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeec---------------
Confidence            7777653322222223456677   67788899999764 7889999999999999876544321               


Q ss_pred             cCccCCcccceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCC
Q psy16881         81 VPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT  160 (222)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~  160 (222)
                                                         .|...|.++.|+.+|.++++++.|+.|||||.++++.+.+-.+|.
T Consensus       171 -----------------------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he  215 (472)
T KOG0303|consen  171 -----------------------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE  215 (472)
T ss_pred             -----------------------------------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc
Confidence                                               278889999999999999999999999999999999998887776


Q ss_pred             cc-EEEEEEcCCCCEEEEee----CCCeEEEEeCC-------------------------CCe-EEEeeCCCcEEEEeCC
Q psy16881        161 RY-VTCCTFSCDDSLLASGS----NDKTVTIWDML-------------------------ATL-LASGSNDKTVTIWDMR  209 (222)
Q Consensus       161 ~~-V~~~~~s~~~~~l~s~s----~D~~i~lwd~~-------------------------~~~-l~s~~~d~~i~iwd~~  209 (222)
                      .. ..-+.|-.+|. |+|.+    .++++-|||..                         +.+ ..+|--|+.||-|++.
T Consensus       216 G~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit  294 (472)
T KOG0303|consen  216 GAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT  294 (472)
T ss_pred             CCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence            53 23355666787 55444    56799999853                         233 4455578999999887


Q ss_pred             CCc
Q psy16881        210 GNL  212 (222)
Q Consensus       210 ~~~  212 (222)
                      .+.
T Consensus       295 ~d~  297 (472)
T KOG0303|consen  295 NEP  297 (472)
T ss_pred             CCC
Confidence            553

>KOG0307|consensus

Probab=99.41  E-value=1.1e-12  Score=116.90  Aligned_cols=180  Identities=19%  Similarity=0.335  Sum_probs=118.9

Q ss_pred             eeccceEEEEEcCCCC-eEEEecCCCeEEEEeCCCCceEEeeccCC-CcceeeccceecCccCCcccceee-eeeeeeEe
Q psy16881         25 HIGSNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSLIMETNDRG-HTQGRIEGWGRVPACPLCRTRVFS-TFVKQIIP  101 (222)
Q Consensus        25 ~~~~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  101 (222)
                      .|.+.|+.|.|++... +||+|++||.|.|||+.+........... .....+..|..     .....+.+ ........
T Consensus       114 ~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNr-----kvqhILAS~s~sg~~~i  188 (1049)
T KOG0307|consen  114 KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNR-----KVSHILASGSPSGRAVI  188 (1049)
T ss_pred             ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccch-----hhhHHhhccCCCCCcee
Confidence            3567899999998765 99999999999999998654333322110 01111111211     00111111 12223444


Q ss_pred             eeeeeeccCCccccccC--CCEEEEEEcCCCC-EEEEEeCCC---cEEEEeCCC-CceEEEeccCCccEEEEEEcCCC-C
Q psy16881        102 TRVGVYGQDSETVGRHT--SAVTSVRFNHKSS-LLVSGSVDK---TVKLWDVPS-LTCIKTLESHTRYVTCCTFSCDD-S  173 (222)
Q Consensus       102 ~~~~~~~~~~~~~~~h~--~~i~~l~~~~~~~-~l~sg~~dg---~I~iwd~~~-~~~~~~~~~~~~~V~~~~~s~~~-~  173 (222)
                      |++... .....+..|.  ..+..++|||+.. .+++++.|.   .|.+||+|. ...++++++|+..|.++.|++.+ +
T Consensus       189 WDlr~~-~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~  267 (1049)
T KOG0307|consen  189 WDLRKK-KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPR  267 (1049)
T ss_pred             ccccCC-CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCch
Confidence            554322 1222233232  3477899999974 566666554   599999974 34577788999999999999876 8


Q ss_pred             EEEEeeCCCeEEEEeCCC------------------------CeEEEeeCCCcEEEEeCCC
Q psy16881        174 LLASGSNDKTVTIWDMLA------------------------TLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       174 ~l~s~s~D~~i~lwd~~~------------------------~~l~s~~~d~~i~iwd~~~  210 (222)
                      +|+|.+.|+.|..|+..+                        .++++++-||+|.|+.+.+
T Consensus       268 lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~  328 (1049)
T KOG0307|consen  268 LLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG  328 (1049)
T ss_pred             hhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence            899999999999999742                        3688889999999999874

>KOG4227|consensus

Probab=99.41  E-value=3.7e-12  Score=102.42  Aligned_cols=141  Identities=26%  Similarity=0.323  Sum_probs=111.9

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      .+-|..|.||.++++|++|++|-.+++|.++........       ++                             ++.
T Consensus        56 ~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~-------KP-----------------------------I~~   99 (609)
T KOG4227|consen   56 TGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTP-------KP-----------------------------IGV   99 (609)
T ss_pred             ccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCC-------CC-----------------------------cee
Confidence            566999999999999999999999999987632111100       00                             000


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc--CCccEEEEEEcCCCCEEEEeeCCCeE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES--HTRYVTCCTFSCDDSLLASGSNDKTV  184 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~--~~~~V~~~~~s~~~~~l~s~s~D~~i  184 (222)
                            +-..|...|.|++|+..+..+++|..+++|...|+.+.+.+..+..  ....|.-+..+|-.+.+++.+.++.+
T Consensus       100 ------~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V  173 (609)
T KOG4227|consen  100 ------MEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLV  173 (609)
T ss_pred             ------ccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceE
Confidence                  0124678999999999888999999999999999998877665532  22378999999999999999999999


Q ss_pred             EEEeCC---------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        185 TIWDML---------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       185 ~lwd~~---------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      .+||++                           ..++++.++.+.+.+||.+
T Consensus       174 ~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R  225 (609)
T KOG4227|consen  174 SFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRR  225 (609)
T ss_pred             EEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeec
Confidence            999984                           2478889999999999987

>KOG0639|consensus

Probab=99.40  E-value=3e-12  Score=105.69  Aligned_cols=152  Identities=17%  Similarity=0.317  Sum_probs=93.1

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEe--eccCCCcceeeccceecCccCCcccceeeeee-eeeEeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIME--TNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV-KQIIPTR  103 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  103 (222)
                      ..-|+++...|||+.|++|+.-.+|.|||+...+.-..  ....+.     .+++ +..+++.+ ..|+-+. ..+..|+
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssap-----aCyA-La~spDak-vcFsccsdGnI~vwD  537 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP-----ACYA-LAISPDAK-VCFSCCSDGNIAVWD  537 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcch-----hhhh-hhcCCccc-eeeeeccCCcEEEEE
Confidence            56688889999999999999999999999986543221  111000     0010 11111111 2233322 2455555


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKT  183 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~  183 (222)
                      .. .....+.+.+|++.+.||.++++|..|-||+.|++||-||++++..+.... -.+.|.++..+|.+..|+.|.+.+.
T Consensus       538 Lh-nq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~  615 (705)
T KOG0639|consen  538 LH-NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSN  615 (705)
T ss_pred             cc-cceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCc
Confidence            32 111235678999999999999999999999999999999998765433211 1233444445555555555555544


Q ss_pred             EEEE
Q psy16881        184 VTIW  187 (222)
Q Consensus       184 i~lw  187 (222)
                      +.+-
T Consensus       616 vevl  619 (705)
T KOG0639|consen  616 VEVL  619 (705)
T ss_pred             EEEE
Confidence            4443

>KOG2919|consensus

Probab=99.40  E-value=4.4e-12  Score=99.61  Aligned_cols=157  Identities=20%  Similarity=0.291  Sum_probs=93.0

Q ss_pred             eEEEEEcCCCCeEEEecCCCeEEEEeCCC-CceEEeeccCCC----cceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         30 MRCVRFSPDTRLLATGGDDETVTVWRSDD-LSLIMETNDRGH----TQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        30 v~~l~~spdg~~l~tgs~Dg~i~iwd~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      ..+|+|+|||..|++| ....|++||... ++.........+    ..+.+..+...|....  .....+.....- ...
T Consensus       161 AhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~--~~a~gsY~q~~g-iy~  236 (406)
T KOG2919|consen  161 AHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSK--TLAVGSYGQRVG-IYN  236 (406)
T ss_pred             heeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCc--ceeeecccceee-eEe
Confidence            5679999999999875 678999999843 332211111111    0111111111111110  011111111000 000


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC-CceEEEeccCCc-cEEEE--EEcCCCCEEEEee
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV-DKTVKLWDVPS-LTCIKTLESHTR-YVTCC--TFSCDDSLLASGS  179 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~-dg~I~iwd~~~-~~~~~~~~~~~~-~V~~~--~~s~~~~~l~s~s  179 (222)
                      .........+.+|.+.|+.++|+++|+.|++|.. |-.|..||++. ...+..+..|.. .-.-+  ...|+++.|++|+
T Consensus       237 ~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~  316 (406)
T KOG2919|consen  237 DDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD  316 (406)
T ss_pred             cCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC
Confidence            0111223456689999999999999999999864 67899999985 344555555543 22233  4468999999999


Q ss_pred             CCCeEEEEeCC
Q psy16881        180 NDKTVTIWDML  190 (222)
Q Consensus       180 ~D~~i~lwd~~  190 (222)
                      .||.|++||+.
T Consensus       317 tdG~V~vwdlk  327 (406)
T KOG2919|consen  317 TDGSVRVWDLK  327 (406)
T ss_pred             CCccEEEEecC
Confidence            99999999985

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.40  E-value=8.7e-11  Score=94.22  Aligned_cols=132  Identities=17%  Similarity=0.160  Sum_probs=94.4

Q ss_pred             cceEEEEEcCCCCeE-EEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         28 SNMRCVRFSPDTRLL-ATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        28 ~~v~~l~~spdg~~l-~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ..++.++|+|+|+.+ ++++.+++|++||..+++.....                                         
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-----------------------------------------   69 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL-----------------------------------------   69 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec-----------------------------------------
Confidence            346789999999976 57788999999998754332211                                         


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCC-eE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVS-GSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDK-TV  184 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~s-g~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~-~i  184 (222)
                              ..+ ..+..+.++|+++.++. ++.++.|++||+++.+.+..+..+ ..+.+++|+|++..+++++.++ .+
T Consensus        70 --------~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~  139 (300)
T TIGR03866        70 --------PSG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMA  139 (300)
T ss_pred             --------cCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeE
Confidence                    001 11345778999986655 456899999999988777766533 3467899999999999888765 45


Q ss_pred             EEEeCC----------------------CCeE-EEeeCCCcEEEEeCCC
Q psy16881        185 TIWDML----------------------ATLL-ASGSNDKTVTIWDMRG  210 (222)
Q Consensus       185 ~lwd~~----------------------~~~l-~s~~~d~~i~iwd~~~  210 (222)
                      .+||..                      ...+ +++..++.|++||+++
T Consensus       140 ~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~  188 (300)
T TIGR03866       140 HFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT  188 (300)
T ss_pred             EEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence            666763                      2345 4445689999999974

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0644|consensus

Probab=99.38  E-value=1.9e-13  Score=118.38  Aligned_cols=111  Identities=27%  Similarity=0.524  Sum_probs=98.1

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      -+.|-|+.|...|.++++|++|-.++||..++..+...                                          
T Consensus       190 ~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs------------------------------------------  227 (1113)
T KOG0644|consen  190 RNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS------------------------------------------  227 (1113)
T ss_pred             hhheeeeeeccccceEeecCccceeeeeeccchhhhcc------------------------------------------
Confidence            56799999999999999999999999998775544321                                          


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI  186 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l  186 (222)
                             ..+|.+.|+.++.+..+.++++++.|..|++|.+.++..+..+.+|+..|++++|+|..    +.+.||++++
T Consensus       228 -------~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~  296 (1113)
T KOG0644|consen  228 -------CRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRI  296 (1113)
T ss_pred             -------CCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEe
Confidence                   14689999999998888899999999999999999999999999999999999999975    7789999999


Q ss_pred             EeCC
Q psy16881        187 WDML  190 (222)
Q Consensus       187 wd~~  190 (222)
                      ||.+
T Consensus       297 wd~r  300 (1113)
T KOG0644|consen  297 WDAR  300 (1113)
T ss_pred             cccc
Confidence            9964

>KOG4328|consensus

Probab=99.38  E-value=1.6e-11  Score=100.20  Aligned_cols=179  Identities=19%  Similarity=0.292  Sum_probs=115.4

Q ss_pred             eccceEEEEEcCCCC--eEEEecCCCeEEEEeCCCCceEEeeccCCC-cceeeccceecCccCCcccceee-eeeeeeEe
Q psy16881         26 IGSNMRCVRFSPDTR--LLATGGDDETVTVWRSDDLSLIMETNDRGH-TQGRIEGWGRVPACPLCRTRVFS-TFVKQIIP  101 (222)
Q Consensus        26 ~~~~v~~l~~spdg~--~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  101 (222)
                      +...|.+++|+|.-.  +||+|..-|+|-+|++.......+....++ ....+..   +.+.+......++ .....+..
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~---l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSG---LKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccc---eEecCCChhheeeeccCceeee
Confidence            378899999999754  799999999999999952221111000000 0111111   2222333222222 22333332


Q ss_pred             eeeeeeccCCcc-cc--ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-EEEeccCCccEEEEEEcCCC-CEEE
Q psy16881        102 TRVGVYGQDSET-VG--RHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC-IKTLESHTRYVTCCTFSCDD-SLLA  176 (222)
Q Consensus       102 ~~~~~~~~~~~~-~~--~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~-~~~~~~~~~~V~~~~~s~~~-~~l~  176 (222)
                      .+..  ...... +.  .-...+..++|+.+...++.+..-|..-+||+++.+. ...+..|+..|..++++|.. .+||
T Consensus       262 ~D~~--~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la  339 (498)
T KOG4328|consen  262 QDFE--GNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA  339 (498)
T ss_pred             eeec--chhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence            2211  111111 11  1234466778888888888888878999999987654 66677888999999999965 5788


Q ss_pred             EeeCCCeEEEEeCC---------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        177 SGSNDKTVTIWDML---------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       177 s~s~D~~i~lwd~~---------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      |+|-|++.+|||++                           +..|++.+.|..|+|||.+
T Consensus       340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            99999999999984                           2238889999999999986

>KOG0322|consensus

Probab=99.38  E-value=3.9e-12  Score=97.43  Aligned_cols=71  Identities=24%  Similarity=0.485  Sum_probs=66.6

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881        119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      ..|..+.+-|+++.++|+++|+-||||+.++...+..++-|+..|++++|+|+..++|.||.|++|.+|++
T Consensus       252 pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  252 PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            44677888899999999999999999999999999999999999999999999999999999999999986

>KOG2111|consensus

Probab=99.38  E-value=8.5e-11  Score=92.19  Aligned_cols=158  Identities=18%  Similarity=0.294  Sum_probs=101.6

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCC-CCceEEeeccCCCcceeeccceecCccCCccccee-eeeeeeeEeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSD-DLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF-STFVKQIIPTR  103 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  103 (222)
                      ..+.|+.|.++++  +|++. .+++|++|.+. +.+.+..+.....-.+.+. ..  +..... ..++ +....++...+
T Consensus        93 f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~-~~--~~~~k~-~LafPg~k~GqvQi~d  165 (346)
T KOG2111|consen   93 FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCS-LC--PTSNKS-LLAFPGFKTGQVQIVD  165 (346)
T ss_pred             eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEe-ec--CCCCce-EEEcCCCccceEEEEE
Confidence            3566999998776  34443 57899999887 3344433321111011111 00  000000 0111 11122222222


Q ss_pred             eeeecc-CCccccccCCCEEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCceEEEecc--CCccEEEEEEcCCCCEEEEee
Q psy16881        104 VGVYGQ-DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKT-VKLWDVPSLTCIKTLES--HTRYVTCCTFSCDDSLLASGS  179 (222)
Q Consensus       104 ~~~~~~-~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~-I~iwd~~~~~~~~~~~~--~~~~V~~~~~s~~~~~l~s~s  179 (222)
                      ...... ....+..|...|.|++++.+|..+||+|..|+ |||||+.++..+.++.-  ....|.|++|||++.+|+++|
T Consensus       166 L~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS  245 (346)
T KOG2111|consen  166 LASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS  245 (346)
T ss_pred             hhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc
Confidence            111111 22456679999999999999999999999998 88999999999888753  344699999999999999999


Q ss_pred             CCCeEEEEeCC
Q psy16881        180 NDKTVTIWDML  190 (222)
Q Consensus       180 ~D~~i~lwd~~  190 (222)
                      +-|++.++.++
T Consensus       246 dKgTlHiF~l~  256 (346)
T KOG2111|consen  246 DKGTLHIFSLR  256 (346)
T ss_pred             CCCeEEEEEee
Confidence            99999999875

>KOG0771|consensus

Probab=99.38  E-value=1.7e-11  Score=98.96  Aligned_cols=162  Identities=20%  Similarity=0.301  Sum_probs=106.0

Q ss_pred             eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee--eeeeEee
Q psy16881         25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF--VKQIIPT  102 (222)
Q Consensus        25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  102 (222)
                      .|.+.|.++.|||||++|++-+.| ..++|+..++..+....+.. .+..+.......+..-...+.++..  ...+...
T Consensus       184 ~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~-k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~  261 (398)
T KOG0771|consen  184 AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFS-KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLC  261 (398)
T ss_pred             hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcc-cchhhhhceecccCCCceEEEEEecCCCCceeEE
Confidence            345779999999999999999999 99999999886555443211 1111111000000000011111111  1122222


Q ss_pred             eeeeecc-----CCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe-ccCCccEEEEEEcCCCCEEE
Q psy16881        103 RVGVYGQ-----DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL-ESHTRYVTCCTFSCDDSLLA  176 (222)
Q Consensus       103 ~~~~~~~-----~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~-~~~~~~V~~~~~s~~~~~l~  176 (222)
                      +...|..     ....+.+ ...|.+++.+++|++++.|+.||.|.|++.++.++++-+ +.|...|+.++|+|+.++++
T Consensus       262 ~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~  340 (398)
T KOG0771|consen  262 DISLWSGSNFLRLRKKIKR-FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLA  340 (398)
T ss_pred             Eeeeeccccccchhhhhhc-cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccc
Confidence            2222222     1122222 346899999999999999999999999999988776544 57889999999999999999


Q ss_pred             EeeCCCeEEEEeC
Q psy16881        177 SGSNDKTVTIWDM  189 (222)
Q Consensus       177 s~s~D~~i~lwd~  189 (222)
                      +.+.|..+.+.-+
T Consensus       341 svSs~~~~~v~~l  353 (398)
T KOG0771|consen  341 SVSSDNEAAVTKL  353 (398)
T ss_pred             ccccCCceeEEEE
Confidence            9998888877655

>KOG0649|consensus

Probab=99.36  E-value=6.7e-11  Score=89.87  Aligned_cols=139  Identities=19%  Similarity=0.393  Sum_probs=103.9

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY  107 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (222)
                      ..|+.+...|...-|+.++.|+.++-||+++++..+++                                          
T Consensus       115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~------------------------------------------  152 (325)
T KOG0649|consen  115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY------------------------------------------  152 (325)
T ss_pred             CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE------------------------------------------
Confidence            34777888877665556668999999999887655443                                          


Q ss_pred             ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCC----------ccEEEEEEcCCCCEEEE
Q psy16881        108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT----------RYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~----------~~V~~~~~s~~~~~l~s  177 (222)
                             ++|++-|.++.--.....+++|++||++||||+++++++..+....          .+|.+++.  +...|++
T Consensus       153 -------rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvC  223 (325)
T KOG0649|consen  153 -------RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVC  223 (325)
T ss_pred             -------cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEe
Confidence                   4678888888664445579999999999999999999988775432          23555554  4667777


Q ss_pred             eeCCCeEEEEeCC--------------------CCeEEEeeCCCcEEEEeCCCCccccCCC
Q psy16881        178 GSNDKTVTIWDML--------------------ATLLASGSNDKTVTIWDMRGNLSVDVPL  218 (222)
Q Consensus       178 ~s~D~~i~lwd~~--------------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~  218 (222)
                      |+ ...+.+|+++                    ...+.++++-+-+.-|.+.+.+..-+|.
T Consensus       224 Gg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gvl~a~ip~  283 (325)
T KOG0649|consen  224 GG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLNGVLQANIPV  283 (325)
T ss_pred             cC-CCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeeccEEEEeccC
Confidence            65 4579999985                    2457788888899999999887766654

>KOG0642|consensus

Probab=99.36  E-value=1.8e-11  Score=102.19  Aligned_cols=150  Identities=22%  Similarity=0.309  Sum_probs=109.5

Q ss_pred             EEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee
Q psy16881         18 LILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK   97 (222)
Q Consensus        18 ~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (222)
                      .++++|   .++|.|++++++++.+.+|+.||+|+.|++....-.            ...++.                 
T Consensus       338 ~tfraH---~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp------------~ds~dp-----------------  385 (577)
T KOG0642|consen  338 LTFRAH---EGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP------------DDSYDP-----------------  385 (577)
T ss_pred             EEEecc---cCceEEEEecCCceEEEeeccCceeeeeccCCCCCc------------ccccCc-----------------
Confidence            366666   899999999999999999999999999986511000            000000                 


Q ss_pred             eeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-EE------------Eec----cC-
Q psy16881         98 QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC-IK------------TLE----SH-  159 (222)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~-~~------------~~~----~~-  159 (222)
                                ......+.+|++.|+.+++++....|++++.||++++|+...... +.            .+.    .| 
T Consensus       386 ----------~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~  455 (577)
T KOG0642|consen  386 ----------SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHS  455 (577)
T ss_pred             ----------chhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhh
Confidence                      000123457999999999999888999999999999998654322 00            000    00 


Q ss_pred             ---------------------------------CccEEEEEEcCCCCEEEEeeCCCeEEEEeCC----------------
Q psy16881        160 ---------------------------------TRYVTCCTFSCDDSLLASGSNDKTVTIWDML----------------  190 (222)
Q Consensus       160 ---------------------------------~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~----------------  190 (222)
                                                       ...+.-+..+|.+.+.+++-.|+.|+++|..                
T Consensus       456 ~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svt  535 (577)
T KOG0642|consen  456 LASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVT  535 (577)
T ss_pred             hhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceec
Confidence                                             0114456778888999999999999999963                


Q ss_pred             -------CCeEEEeeCCCcEEEEeCC
Q psy16881        191 -------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       191 -------~~~l~s~~~d~~i~iwd~~  209 (222)
                             +.+|++++.|+.+++|.+.
T Consensus       536 slai~~ng~~l~s~s~d~sv~l~kld  561 (577)
T KOG0642|consen  536 SLAIDPNGPYLMSGSHDGSVRLWKLD  561 (577)
T ss_pred             ceeecCCCceEEeecCCceeehhhcc
Confidence                   5789999999999999985

>KOG2096|consensus

Probab=99.36  E-value=3.7e-11  Score=94.38  Aligned_cols=119  Identities=14%  Similarity=0.244  Sum_probs=93.9

Q ss_pred             eeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEe
Q psy16881         22 GSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIP  101 (222)
Q Consensus        22 ~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (222)
                      .+..|+..+..+.....+++|.+++.|.+|-+|+++ ++.+.....                                  
T Consensus       182 f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt----------------------------------  226 (420)
T KOG2096|consen  182 FERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT----------------------------------  226 (420)
T ss_pred             cchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc----------------------------------
Confidence            445567888888888899999999999999999987 444332210                                  


Q ss_pred             eeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC---CCC-----ceEEEeccCCccEEEEEEcCCCC
Q psy16881        102 TRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV---PSL-----TCIKTLESHTRYVTCCTFSCDDS  173 (222)
Q Consensus       102 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~---~~~-----~~~~~~~~~~~~V~~~~~s~~~~  173 (222)
                                     ....-...+.+|+|+++++++----|++|..   +++     +.+.++++|++.|.+++|+++..
T Consensus       227 ---------------nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~  291 (420)
T KOG2096|consen  227 ---------------NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST  291 (420)
T ss_pred             ---------------ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc
Confidence                           0111123668899999999999889999975   222     23567899999999999999999


Q ss_pred             EEEEeeCCCeEEEEeCC
Q psy16881        174 LLASGSNDKTVTIWDML  190 (222)
Q Consensus       174 ~l~s~s~D~~i~lwd~~  190 (222)
                      .++|.|.||++++||+.
T Consensus       292 r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  292 RAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             eeEEEecCCcEEEeecc
Confidence            99999999999999973

>KOG1539|consensus

Probab=99.34  E-value=4.1e-11  Score=104.01  Aligned_cols=139  Identities=22%  Similarity=0.258  Sum_probs=115.2

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      ....+.+++.++.|++.+.|...|+|.+|++.++.....+.                                       
T Consensus       447 ~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~---------------------------------------  487 (910)
T KOG1539|consen  447 DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG---------------------------------------  487 (910)
T ss_pred             cCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc---------------------------------------
Confidence            45789999999999999999999999999987553322210                                       


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                             .-..|+.+|+.++.+..++.+++++.+|.++.||.+.......+... ..+.++..+.....++.+.+|-.|+
T Consensus       488 -------~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-~~~~~iv~hr~s~l~a~~~ddf~I~  559 (910)
T KOG1539|consen  488 -------DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-SSITGIVYHRVSDLLAIALDDFSIR  559 (910)
T ss_pred             -------cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-CCcceeeeeehhhhhhhhcCceeEE
Confidence                   00248999999999988999999999999999999987776666543 4577888898889999999999999


Q ss_pred             EEeCC-----------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        186 IWDML-----------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       186 lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      ++|..                       +..+++++.|++|++||+-+.
T Consensus       560 vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~  608 (910)
T KOG1539|consen  560 VVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG  608 (910)
T ss_pred             EEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc
Confidence            99973                       468999999999999998643

>KOG2048|consensus

Probab=99.34  E-value=4.1e-10  Score=95.92  Aligned_cols=186  Identities=20%  Similarity=0.295  Sum_probs=117.7

Q ss_pred             eEEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee
Q psy16881         17 ELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV   96 (222)
Q Consensus        17 ~~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (222)
                      ..+...+.+....|-.++|. ++.+|++.+-+|+|.-||+.+..........+.     ..|. ....+... ...-.+.
T Consensus        59 ~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg-----~IWs-iai~p~~~-~l~Igcd  130 (691)
T KOG2048|consen   59 FLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGG-----AIWS-IAINPENT-ILAIGCD  130 (691)
T ss_pred             eeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCc-----ceeE-EEeCCccc-eEEeecC
Confidence            34444555567889999999 555677888999999999998776554421110     0111 00000000 0000111


Q ss_pred             eeeE-eeeeeeec-cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec--------cCCccEEEE
Q psy16881         97 KQII-PTRVGVYG-QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE--------SHTRYVTCC  166 (222)
Q Consensus        97 ~~~~-~~~~~~~~-~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~--------~~~~~V~~~  166 (222)
                      +... ....+... .-.+.+...++.|.+++|++++..+++|+.||.|++||.+++..+....        ...--|+++
T Consensus       131 dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv  210 (691)
T KOG2048|consen  131 DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSV  210 (691)
T ss_pred             CceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEE
Confidence            1100 00000000 0112344567899999999999999999999999999999887765221        123347788


Q ss_pred             EEcCCCCEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        167 TFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       167 ~~s~~~~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      .|-.+ ..|++|-..|+|+.||..                       ...+.++|.|++|..+.+.++
T Consensus       211 ~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  211 LFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             EEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence            77744 568899899999999973                       357899999999888877643

>KOG0771|consensus

Probab=99.33  E-value=2e-11  Score=98.59  Aligned_cols=129  Identities=29%  Similarity=0.488  Sum_probs=90.7

Q ss_pred             EEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccC
Q psy16881         31 RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQD  110 (222)
Q Consensus        31 ~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (222)
                      .+++|+++|..|++|+.||++|+|+..+...+.+                                              
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~----------------------------------------------  181 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE----------------------------------------------  181 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhh----------------------------------------------
Confidence            7899999999999999999999998653221110                                              


Q ss_pred             CccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc--CCccEEEEEEcCCC-----CEEEEeeCCCe
Q psy16881        111 SETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES--HTRYVTCCTFSCDD-----SLLASGSNDKT  183 (222)
Q Consensus       111 ~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~--~~~~V~~~~~s~~~-----~~l~s~s~D~~  183 (222)
                         ...|...|.++.|+|+|+.+++-+.| ..+||+.+++.++.....  .......+.|+.++     ...+....-+.
T Consensus       182 ---e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~  257 (398)
T KOG0771|consen  182 ---EIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGG  257 (398)
T ss_pred             ---hHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCc
Confidence               12478889999999999999999999 999999998866554431  12234556666555     23333444455


Q ss_pred             EEEEeCC----------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        184 VTIWDML----------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       184 i~lwd~~----------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      |++||+.                            ++++|-|+.||.|-|++..
T Consensus       258 v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~  311 (398)
T KOG0771|consen  258 VRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAK  311 (398)
T ss_pred             eeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEec
Confidence            6665541                            4567777777777777765

>KOG4378|consensus

Probab=99.32  E-value=1.2e-11  Score=102.06  Aligned_cols=130  Identities=25%  Similarity=0.376  Sum_probs=102.8

Q ss_pred             EEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccC
Q psy16881         31 RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQD  110 (222)
Q Consensus        31 ~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (222)
                      .|++......++++|+..+.|+|||+....+.                                                
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h------------------------------------------------  114 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIH------------------------------------------------  114 (673)
T ss_pred             HHHhhhhcceeeeccCcCceeeehhhHHHHHh------------------------------------------------
Confidence            44444445578888888888888887521111                                                


Q ss_pred             CccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccC-CccEEEEEEcCCCC-EEEEeeCCCeEEEEe
Q psy16881        111 SETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESH-TRYVTCCTFSCDDS-LLASGSNDKTVTIWD  188 (222)
Q Consensus       111 ~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~-~~~V~~~~~s~~~~-~l~s~s~D~~i~lwd  188 (222)
                       +.+++|+..|+++.|+-...++++++..|-|.|..+.++....++... .+.|+-+.||+..+ +|.+++.+|.+.+||
T Consensus       115 -r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD  193 (673)
T KOG4378|consen  115 -RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD  193 (673)
T ss_pred             -hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence             123569999999999988899999999999999999988877777654 45577899999776 455799999999999


Q ss_pred             CC-------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        189 ML-------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       189 ~~-------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      +.                         ..++++.|.|.+|++||.+
T Consensus       194 v~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~  239 (673)
T KOG4378|consen  194 VQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR  239 (673)
T ss_pred             ccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence            84                         2579999999999999997

>KOG0974|consensus

Probab=99.32  E-value=5.2e-11  Score=105.44  Aligned_cols=169  Identities=17%  Similarity=0.276  Sum_probs=118.3

Q ss_pred             EcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccce--ecCccCCcccceeeeeeeeeEeeeeeeeccCCc
Q psy16881         35 FSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWG--RVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSE  112 (222)
Q Consensus        35 ~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (222)
                      +.-+.++++.+..++.+.+||........+...    ..+...+.  ..-+........+......+..|+.. ......
T Consensus        95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~----~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~-~dn~p~  169 (967)
T KOG0974|consen   95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQS----DERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH-EDNKPI  169 (967)
T ss_pred             hhhhcceEEEEEcCceEEEEecccCceehhcCC----CceEEEEeEEEEeccCcEEEEEeccccccEEEEecc-ccCCcc
Confidence            344567788888899999999887665543311    11111000  00111111122223333344455433 112222


Q ss_pred             cccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE-EeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC-
Q psy16881        113 TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIK-TLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML-  190 (222)
Q Consensus       113 ~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~-~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~-  190 (222)
                      .+.+|.+.|..+.++.+|.++++.|+|.++|+|++.+++... ..-+|+..|+.+.|+|.  .|+|++.|-+.++|+.. 
T Consensus       170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~  247 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG  247 (967)
T ss_pred             eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc
Confidence            467899999999999999999999999999999999887765 66789999999999988  89999999999999542 


Q ss_pred             ----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        191 ----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       191 ----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                                            ....++++.|+.+++||+.+
T Consensus       248 ~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  248 TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence                                  35689999999999999864

>KOG2106|consensus

Probab=99.31  E-value=3.1e-10  Score=93.96  Aligned_cols=92  Identities=22%  Similarity=0.315  Sum_probs=76.8

Q ss_pred             ccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC---
Q psy16881        114 VGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML---  190 (222)
Q Consensus       114 ~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~---  190 (222)
                      ..+|......++.+|+.+.+++++.|+.+++|+  ..+...+..- .+++.|+.|+|.| .+|.|+..|...+.|..   
T Consensus       364 v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~-~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~  439 (626)
T KOG2106|consen  364 VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII-EDPAECADFHPSG-VVAVGTATGRWFVLDTETQD  439 (626)
T ss_pred             EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe-cCceeEeeccCcc-eEEEeeccceEEEEecccce
Confidence            456888999999999999999999999999999  4444443322 4567899999999 99999999998888863   


Q ss_pred             -------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        191 -------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       191 -------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                                         +.++|.|+.|+.|+||.++
T Consensus       440 lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs  477 (626)
T KOG2106|consen  440 LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS  477 (626)
T ss_pred             eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence                               5689999999999999876

>KOG1188|consensus

Probab=99.30  E-value=6.4e-11  Score=93.65  Aligned_cols=123  Identities=26%  Similarity=0.459  Sum_probs=90.6

Q ss_pred             CeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCCccccccCC
Q psy16881         40 RLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTS  119 (222)
Q Consensus        40 ~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  119 (222)
                      ..+|++...|+|++||..++..+.++                                                 .+|..
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~f-------------------------------------------------k~~~~   71 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEF-------------------------------------------------KGPPA   71 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhhee-------------------------------------------------cCCCC
Confidence            45889999999999998765554433                                                 23444


Q ss_pred             CEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceE--EEeccCC-ccEEEEEEcCCCCEEEEee----CCCeEEEEeCC
Q psy16881        120 AVTSVRFNH--KSSLLVSGSVDKTVKLWDVPSLTCI--KTLESHT-RYVTCCTFSCDDSLLASGS----NDKTVTIWDML  190 (222)
Q Consensus       120 ~i~~l~~~~--~~~~l~sg~~dg~I~iwd~~~~~~~--~~~~~~~-~~V~~~~~s~~~~~l~s~s----~D~~i~lwd~~  190 (222)
                      .++.++|..  ....+++++.||+||+||++++...  ..+.++. .+-.|+.....++++++|+    .+-.+.+||++
T Consensus        72 ~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR  151 (376)
T KOG1188|consen   72 TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVR  151 (376)
T ss_pred             cccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEec
Confidence            555566643  3457999999999999999976543  4455555 3456676666788888887    45688999985


Q ss_pred             --------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        191 --------------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       191 --------------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                                                ..+|+|||.||.+.++|++..
T Consensus       152 ~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  152 SEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             cccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence                                      368999999999999999753

>KOG1310|consensus

Probab=99.29  E-value=3.2e-11  Score=100.71  Aligned_cols=98  Identities=27%  Similarity=0.455  Sum_probs=87.5

Q ss_pred             cccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe-ccCCccEEEEEEcCC--CCEEEEeeCCCeEEEEeC
Q psy16881        113 TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL-ESHTRYVTCCTFSCD--DSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       113 ~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~-~~~~~~V~~~~~s~~--~~~l~s~s~D~~i~lwd~  189 (222)
                      .+.+|++=|+++.|+.+|..|++|+.|--+.|||....+++..+ .+|...|.++.|-|.  .+++++|..|..|+++|+
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl  124 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL  124 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence            56789999999999999999999999999999999877777655 689999999999874  578999999999999998


Q ss_pred             C----------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        190 L----------------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       190 ~----------------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      .                                  ...+.++++||+|+-+|+|.
T Consensus       125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE  179 (758)
T ss_pred             ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence            4                                  24689999999999999984

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.29  E-value=1e-09  Score=90.40  Aligned_cols=136  Identities=40%  Similarity=0.704  Sum_probs=107.9

Q ss_pred             eccceEEEEEcCCCCeEEEecC-CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGD-DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      |...|+.++|+|+++.+++++. |+.+++|+........                                         
T Consensus       154 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------  192 (466)
T COG2319         154 HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS-----------------------------------------  192 (466)
T ss_pred             CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE-----------------------------------------
Confidence            3677999999999998888886 9999999986421111                                         


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEE-EeccCCccEEEEEEcCCCCEEEEeeCCC
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIK-TLESHTRYVTCCTFSCDDSLLASGSNDK  182 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~-~~~~~~~~V~~~~~s~~~~~l~s~s~D~  182 (222)
                              .+.+|...|.+++|+|++. .+++++.|+.|++||.+.+..+. .+.+|...+ ...|++++..+++++.|+
T Consensus       193 --------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~  263 (466)
T COG2319         193 --------TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDG  263 (466)
T ss_pred             --------eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCC
Confidence                    1123788899999999887 66666999999999998777777 688888775 448999998999999999


Q ss_pred             eEEEEeCC------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        183 TVTIWDML------------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       183 ~i~lwd~~------------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      .+++|++.                        ...+++++.|+.+++||++..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  316 (466)
T COG2319         264 TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG  316 (466)
T ss_pred             cEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence            99999873                        134666777888999988743

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.29  E-value=1.5e-09  Score=89.43  Aligned_cols=183  Identities=33%  Similarity=0.527  Sum_probs=124.3

Q ss_pred             eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc-eEEeeccCCCcceeeccceecCccCCcccceee-ee-eeeeEe
Q psy16881         25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS-LIMETNDRGHTQGRIEGWGRVPACPLCRTRVFS-TF-VKQIIP  101 (222)
Q Consensus        25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~  101 (222)
                      .+...+..+.|.+.+..++.++.|+.+.+|+..... ......... . ..+..... . .......... .. ...+..
T Consensus        63 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~-~-~~~~~~~~~~~~~~d~~~~~  138 (466)
T COG2319          63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLH-D-SSVSKLAL-S-SPDGNSILLASSSLDGTVKL  138 (466)
T ss_pred             eccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccC-C-CceeeEEE-E-CCCcceEEeccCCCCccEEE
Confidence            346789999999999999999999999999988775 333321110 0 01110000 0 0111100110 11 112222


Q ss_pred             eeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCC-EEEEee
Q psy16881        102 TRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV-DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS-LLASGS  179 (222)
Q Consensus       102 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~-~l~s~s  179 (222)
                      ++..........+..|...|..+.|+++++.+++++. |+.+++|+....+.+..+.+|...|.++.|+|++. .+++++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  218 (466)
T COG2319         139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS  218 (466)
T ss_pred             EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence            2211101222345678899999999999998888885 99999999998888888888999999999999998 666669


Q ss_pred             CCCeEEEEeCC--------------C---------CeEEEeeCCCcEEEEeCCCC
Q psy16881        180 NDKTVTIWDML--------------A---------TLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       180 ~D~~i~lwd~~--------------~---------~~l~s~~~d~~i~iwd~~~~  211 (222)
                      .|+.+++||..              .         .++++++.|+.+++||++..
T Consensus       219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  273 (466)
T COG2319         219 SDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSS  273 (466)
T ss_pred             CCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCC
Confidence            99999999753              1         35667889999999999743

>KOG4378|consensus

Probab=99.28  E-value=1.2e-10  Score=96.24  Aligned_cols=138  Identities=23%  Similarity=0.336  Sum_probs=108.6

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.|.++.|.....+||+++..|.|.|-.+.+.....++.                                       
T Consensus       120 h~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~---------------------------------------  160 (673)
T KOG4378|consen  120 HQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT---------------------------------------  160 (673)
T ss_pred             CcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee---------------------------------------
Confidence            48999999999999999999999999998776432211110                                       


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEE-eccCCccEEEEEEcCCC-CEEEEeeCCC
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKT-LESHTRYVTCCTFSCDD-SLLASGSNDK  182 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~-~~~~~~~V~~~~~s~~~-~~l~s~s~D~  182 (222)
                               .+....|.-+.|++..+ .|.+++.+|.|.+||+........ .+.|+.+-..++|+|.. .+|++.+-|.
T Consensus       161 ---------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dk  231 (673)
T KOG4378|consen  161 ---------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDK  231 (673)
T ss_pred             ---------cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccc
Confidence                     00123345788988876 688899999999999987665544 46799998999999864 6778899999


Q ss_pred             eEEEEeCC----------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        183 TVTIWDML----------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       183 ~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      +|.+||+.                      +..|++|...|.|..||+|..
T Consensus       232 ki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  232 KINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST  282 (673)
T ss_pred             eEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence            99999984                      457999999999999999943

>KOG1517|consensus

Probab=99.27  E-value=3e-10  Score=101.21  Aligned_cols=179  Identities=16%  Similarity=0.244  Sum_probs=113.5

Q ss_pred             eccceEEEEEcC--CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecC--------------ccCCccc
Q psy16881         26 IGSNMRCVRFSP--DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVP--------------ACPLCRT   89 (222)
Q Consensus        26 ~~~~v~~l~~sp--dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~   89 (222)
                      ....|+.+.+-.  |..+|++|+.||.|+||+-....        ...++.++.|..+.              ....+..
T Consensus      1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~--------~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~ 1179 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK--------WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGH 1179 (1387)
T ss_pred             CCCccceeeeecccchhheeeeccCceEEEecccccc--------cCCceeEEeeccccccCccCCCCCeeeehhhhCCe
Confidence            356688888764  44589999999999999743211        01111222222111              1111222


Q ss_pred             ceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEc-CCCCEEEEEeCCCcEEEEeCCCC---ceEEEeccCCcc--E
Q psy16881         90 RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFN-HKSSLLVSGSVDKTVKLWDVPSL---TCIKTLESHTRY--V  163 (222)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~~~l~sg~~dg~I~iwd~~~~---~~~~~~~~~~~~--V  163 (222)
                      ...++....++.|+............+...-|+++.-+ ..|++++.|-.||.|++||.+.-   ..+.....|++.  |
T Consensus      1180 Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~I 1259 (1387)
T KOG1517|consen 1180 LLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPI 1259 (1387)
T ss_pred             EEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccc
Confidence            23333345566665421111111122234456666544 34699999999999999998742   235566778887  8


Q ss_pred             EEEEEcCCCCE-EEEeeCCCeEEEEeCC----------------------------CCeEEEeeCCCcEEEEeCCCCcc
Q psy16881        164 TCCTFSCDDSL-LASGSNDKTVTIWDML----------------------------ATLLASGSNDKTVTIWDMRGNLS  213 (222)
Q Consensus       164 ~~~~~s~~~~~-l~s~s~D~~i~lwd~~----------------------------~~~l~s~~~d~~i~iwd~~~~~~  213 (222)
                      .-+.+-++|-. |++|+.||.|++||++                            .+.+|+|+. ..|+||++.++..
T Consensus      1260 v~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l 1337 (1387)
T KOG1517|consen 1260 VHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL 1337 (1387)
T ss_pred             eeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh
Confidence            88888887654 9999999999999985                            245888887 8999999997754

>KOG1408|consensus

Probab=99.27  E-value=5.7e-11  Score=101.93  Aligned_cols=119  Identities=19%  Similarity=0.296  Sum_probs=103.1

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ..++..++..|..++++++++|..|+||+++.+.....+.-                                       
T Consensus       596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKg---------------------------------------  636 (1080)
T KOG1408|consen  596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKG---------------------------------------  636 (1080)
T ss_pred             cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecc---------------------------------------
Confidence            45678899999999999999999999999987765544310                                       


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI  186 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l  186 (222)
                             -.+|.+...-+..+|.|.|+++.+.|+++.++|+-+++|+....+|...|+.+.|.+|=+.|++.+.||.|.+
T Consensus       637 -------s~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFv  709 (1080)
T KOG1408|consen  637 -------SRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFV  709 (1080)
T ss_pred             -------cccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEE
Confidence                   0135555566889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCC
Q psy16881        187 WDMLA  191 (222)
Q Consensus       187 wd~~~  191 (222)
                      |-+..
T Consensus       710 W~lp~  714 (1080)
T KOG1408|consen  710 WKLPL  714 (1080)
T ss_pred             EECch
Confidence            99853

>KOG0307|consensus

Probab=99.27  E-value=2.2e-11  Score=108.73  Aligned_cols=188  Identities=17%  Similarity=0.270  Sum_probs=122.6

Q ss_pred             ccceEEEEEcCCCCe----EEEecCCCeEEEEeCCCCc---eEEeeccCCCcceeeccceecCccCCccc-ceeeeeeee
Q psy16881         27 GSNMRCVRFSPDTRL----LATGGDDETVTVWRSDDLS---LIMETNDRGHTQGRIEGWGRVPACPLCRT-RVFSTFVKQ   98 (222)
Q Consensus        27 ~~~v~~l~~spdg~~----l~tgs~Dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   98 (222)
                      ...-..|+|.+-|..    ||.|..||.|.+|+.....   ............+.+.+.   .+...-.. .+.....+.
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gL---DfN~~q~nlLASGa~~ge  140 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGL---DFNPFQGNLLASGADDGE  140 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeee---eccccCCceeeccCCCCc
Confidence            344567899887765    8999999999999987531   111111111122223322   22222222 222334456


Q ss_pred             eEeeeeeeeccCCccc--cccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEeccCCc--cEEEEEEcCCC-
Q psy16881         99 IIPTRVGVYGQDSETV--GRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTLESHTR--YVTCCTFSCDD-  172 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~--~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~--~V~~~~~s~~~-  172 (222)
                      +..|+..... .....  ....+.|.+++|+..- .+|++++.+|.+.|||++..+.+-.+..+..  .+..+.|+|+. 
T Consensus       141 I~iWDlnn~~-tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a  219 (1049)
T KOG0307|consen  141 ILIWDLNKPE-TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA  219 (1049)
T ss_pred             EEEeccCCcC-CCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc
Confidence            7778754321 11111  1245789999998654 4799999999999999998877766655544  36689999975 


Q ss_pred             CEEEEeeCCC---eEEEEeCC-------------------------CCeEEEeeCCCcEEEEeCC-CCccccCCC
Q psy16881        173 SLLASGSNDK---TVTIWDML-------------------------ATLLASGSNDKTVTIWDMR-GNLSVDVPL  218 (222)
Q Consensus       173 ~~l~s~s~D~---~i~lwd~~-------------------------~~~l~s~~~d~~i~iwd~~-~~~~~~~~~  218 (222)
                      ..|++++.|.   .|.+||++                         ..+|+|++.|+.|.+|+.. ++.+-.+|-
T Consensus       220 Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~  294 (1049)
T KOG0307|consen  220 TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA  294 (1049)
T ss_pred             eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence            5677777663   89999974                         2579999999999999998 555555553

>KOG2394|consensus

Probab=99.26  E-value=9.7e-11  Score=97.54  Aligned_cols=83  Identities=17%  Similarity=0.352  Sum_probs=71.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCCCCeEEEe
Q psy16881        118 TSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASG  197 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~~~l~s~  197 (222)
                      ++.|+..+|+++|++||+.+.||.+||+|+.+++++..++..-....|++|||||++|++|++|--+.||.+....+++-
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR  369 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR  369 (636)
T ss_pred             cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence            45789999999999999999999999999998887766655555678999999999999999999999999976666666


Q ss_pred             eCC
Q psy16881        198 SND  200 (222)
Q Consensus       198 ~~d  200 (222)
                      ++-
T Consensus       370 GqG  372 (636)
T KOG2394|consen  370 GQG  372 (636)
T ss_pred             ccc
Confidence            543

>KOG2445|consensus

Probab=99.25  E-value=1.3e-10  Score=90.94  Aligned_cols=93  Identities=27%  Similarity=0.467  Sum_probs=81.3

Q ss_pred             ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC----CceEEEeccCCccEEEEEEc-C-CCCEEEEeeCCCeEEEEeC
Q psy16881        116 RHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS----LTCIKTLESHTRYVTCCTFS-C-DDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       116 ~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~----~~~~~~~~~~~~~V~~~~~s-~-~~~~l~s~s~D~~i~lwd~  189 (222)
                      +|++-|.++.|+..|+.+++++.|++|+|||.++    ..+..++..|...|..+.|- | -|+.+|++|.|++++||+=
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE   90 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE   90 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence            5888999999999999999999999999999643    45677889999999999995 4 4899999999999999973


Q ss_pred             C----------------------------------CCeEEEeeCCCcEEEEeC
Q psy16881        190 L----------------------------------ATLLASGSNDKTVTIWDM  208 (222)
Q Consensus       190 ~----------------------------------~~~l~s~~~d~~i~iwd~  208 (222)
                      .                                  +.+||+++.||.+|||+.
T Consensus        91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA  143 (361)
T KOG2445|consen   91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEA  143 (361)
T ss_pred             cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEec
Confidence            1                                  357999999999999963

>KOG1524|consensus

Probab=99.23  E-value=1.1e-10  Score=97.34  Aligned_cols=143  Identities=20%  Similarity=0.262  Sum_probs=86.7

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |-+.|.|-+|+|||.-|++++.||.|++|.-... +-.+. .+...+..+..|+..     .....|-.. +.+.+-. .
T Consensus       103 H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-LRStl-~Q~~~~v~c~~W~p~-----S~~vl~c~g-~h~~IKp-L  173 (737)
T KOG1524|consen  103 HAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-LRSTV-VQNEESIRCARWAPN-----SNSIVFCQG-GHISIKP-L  173 (737)
T ss_pred             hhhhhhhcccCCCCceeeeecCCceEEEEeccch-HHHHH-hhcCceeEEEEECCC-----CCceEEecC-CeEEEee-c
Confidence            3466888999999999999999999999974321 11100 011111112222211     111111110 0000000 0


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEee
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS  179 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s  179 (222)
                      ........+..|.+-|.++.|++.++.+++|++|-..+|||-. +..+.+-..|+.+|++++|.|+ ..++.+|
T Consensus       174 ~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S  245 (737)
T KOG1524|consen  174 AANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWS  245 (737)
T ss_pred             ccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeee
Confidence            0111122356799999999999999999999999999999954 5556666677777777777777 4444554

>KOG1538|consensus

Probab=99.21  E-value=5.8e-10  Score=95.31  Aligned_cols=174  Identities=17%  Similarity=0.352  Sum_probs=111.7

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCC-CceEEeeccCCCcceeeccceecCccCCcccceeeeeee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDD-LSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK   97 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (222)
                      ++.+|   ...|.|++|+.||+++|+|+.|+.|.+|...- +.+...     |... +...   .+.+.....  +    
T Consensus        48 tLKgH---KDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYS-----H~D~-IQCM---sFNP~~h~L--a----  109 (1081)
T KOG1538|consen   48 PLKGH---KDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYS-----HNDA-IQCM---SFNPITHQL--A----  109 (1081)
T ss_pred             ccccc---cceEEEEEEccCCceeccCCCceeEEEecccccceeeec-----cCCe-eeEe---ecCchHHHh--h----
Confidence            44555   89999999999999999999999999997541 111111     1111 1100   000000000  0    


Q ss_pred             eeEeeeeeeeccCCccccccC--CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE--EeccCCccEEEEEEcCCC-
Q psy16881         98 QIIPTRVGVYGQDSETVGRHT--SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIK--TLESHTRYVTCCTFSCDD-  172 (222)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~h~--~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~--~~~~~~~~V~~~~~s~~~-  172 (222)
                      .....+.+.|......+.+|+  ..|.+.+|..+|++++.|-.+|+|.|=+-...+.+.  .--+.+++|++++|+|.. 
T Consensus       110 sCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg  189 (1081)
T KOG1538|consen  110 SCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSG  189 (1081)
T ss_pred             hcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCC
Confidence            000111223333333333444  557788999999999999999999987643222222  223577889999999853 


Q ss_pred             ----CEEEEeeCCCeEEEEeCC----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        173 ----SLLASGSNDKTVTIWDML----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       173 ----~~l~s~s~D~~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                          ..+++.-+..++..|.+.                      +.++..||.|+.+++|..++
T Consensus       190 ~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G  253 (1081)
T KOG1538|consen  190 EGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG  253 (1081)
T ss_pred             CCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC
Confidence                588888999999998874                      45788899999999996553

>KOG1523|consensus

Probab=99.20  E-value=6.3e-10  Score=87.47  Aligned_cols=136  Identities=24%  Similarity=0.358  Sum_probs=109.1

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      -++|.|-+|++|++.+|++-+...|.||.......-.                                           
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~-------------------------------------------   46 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWE-------------------------------------------   46 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCce-------------------------------------------
Confidence            5789999999999999999999999999765322110                                           


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-C--ceEEEeccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS-L--TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKT  183 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~-~--~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~  183 (222)
                         ...++..|...|+.+.|.|..+.+++++.|..-.+|...+ +  +..-.+.-++...+++.|+|.++.+|+||..+.
T Consensus        47 ---~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~  123 (361)
T KOG1523|consen   47 ---PAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARL  123 (361)
T ss_pred             ---eceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccE
Confidence               0123345888999999999999999999999999998843 3  233344557788999999999999999999999


Q ss_pred             EEEEeCC---------------------------CCeEEEeeCCCcEEEEeC
Q psy16881        184 VTIWDML---------------------------ATLLASGSNDKTVTIWDM  208 (222)
Q Consensus       184 i~lwd~~---------------------------~~~l~s~~~d~~i~iwd~  208 (222)
                      |.+|=+.                           .-+|++|+.|+++|++..
T Consensus       124 isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  124 ISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA  175 (361)
T ss_pred             EEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEE
Confidence            9998542                           236899999999999953

>KOG0290|consensus

Probab=99.20  E-value=4.2e-10  Score=87.50  Aligned_cols=74  Identities=24%  Similarity=0.391  Sum_probs=62.5

Q ss_pred             cCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCce---EEEeccCCccEEEEEEcCCC-CEEEEeeCCCeEEEEeCC
Q psy16881        117 HTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTC---IKTLESHTRYVTCCTFSCDD-SLLASGSNDKTVTIWDML  190 (222)
Q Consensus       117 h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~---~~~~~~~~~~V~~~~~s~~~-~~l~s~s~D~~i~lwd~~  190 (222)
                      +..++++..|+.-. +++.+.+-|-+..|||+.++..   -..+-+|.++|..++|...+ +.+|+.++||.+++||++
T Consensus       149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR  227 (364)
T KOG0290|consen  149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR  227 (364)
T ss_pred             cCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence            56788999998655 6899999999999999987632   34567899999999999755 578899999999999984

>KOG1007|consensus

Probab=99.20  E-value=4.4e-10  Score=87.34  Aligned_cols=100  Identities=24%  Similarity=0.409  Sum_probs=77.6

Q ss_pred             cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-EEEec-----cCCccEEEEEEcC--CCCEEEEeeCCCeEEEEe
Q psy16881        117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC-IKTLE-----SHTRYVTCCTFSC--DDSLLASGSNDKTVTIWD  188 (222)
Q Consensus       117 h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~-~~~~~-----~~~~~V~~~~~s~--~~~~l~s~s~D~~i~lwd  188 (222)
                      +-+.|.|+.|.|++..+++-. |+.|.+|++..... +.++.     .+....++-+|+|  +++.+++.+ |+++..||
T Consensus       122 avg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D  199 (370)
T KOG1007|consen  122 AVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWD  199 (370)
T ss_pred             HhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEE
Confidence            345899999999998888876 88999999976654 33332     2455677888998  677887764 78999999


Q ss_pred             CCC-------------------------CeEEEeeCCCcEEEEeCC--CCccccCCC
Q psy16881        189 MLA-------------------------TLLASGSNDKTVTIWDMR--GNLSVDVPL  218 (222)
Q Consensus       189 ~~~-------------------------~~l~s~~~d~~i~iwd~~--~~~~~~~~~  218 (222)
                      +++                         ..|++++.|+.|+|||.|  +..++.+|+
T Consensus       200 ~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~  256 (370)
T KOG1007|consen  200 LRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG  256 (370)
T ss_pred             ccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC
Confidence            852                         369999999999999998  445676665

>KOG1587|consensus

Probab=99.18  E-value=1.3e-09  Score=94.10  Aligned_cols=187  Identities=22%  Similarity=0.253  Sum_probs=114.2

Q ss_pred             eccceEEEEEcCCCC--eEEEecCCCeEEEEeCCCCceEEeeccCCCcc------eeeccceecCccCCcccceee-eee
Q psy16881         26 IGSNMRCVRFSPDTR--LLATGGDDETVTVWRSDDLSLIMETNDRGHTQ------GRIEGWGRVPACPLCRTRVFS-TFV   96 (222)
Q Consensus        26 ~~~~v~~l~~spdg~--~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~   96 (222)
                      |.+.+..+.|-++-.  -++++|.||+|..|+++......+........      ....+...+.+.......+.. +..
T Consensus       290 h~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~  369 (555)
T KOG1587|consen  290 HSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEE  369 (555)
T ss_pred             CCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCC
Confidence            477888888865543  48999999999999876543321111000000      000000111111111211111 111


Q ss_pred             eeeEe-eeeeeeccC------CccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCceEEEeccCCccEEEEEE
Q psy16881         97 KQIIP-TRVGVYGQD------SETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP-SLTCIKTLESHTRYVTCCTF  168 (222)
Q Consensus        97 ~~~~~-~~~~~~~~~------~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~-~~~~~~~~~~~~~~V~~~~~  168 (222)
                      +.+.. .+.+.....      ...+..|.++|.++.++|-+..++..+.|-+++||+.. .-..+..+..+.+.|++++|
T Consensus       370 G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaW  449 (555)
T KOG1587|consen  370 GKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAW  449 (555)
T ss_pred             cEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEE
Confidence            11111 010111111      11334578899999999988644444449999999987 55667777778888999999


Q ss_pred             cCCC-CEEEEeeCCCeEEEEeCC-------------------------CCeEEEeeCCCcEEEEeCCCCc
Q psy16881        169 SCDD-SLLASGSNDKTVTIWDML-------------------------ATLLASGSNDKTVTIWDMRGNL  212 (222)
Q Consensus       169 s~~~-~~l~s~s~D~~i~lwd~~-------------------------~~~l~s~~~d~~i~iwd~~~~~  212 (222)
                      ||.- .+++++..||.+.+||+.                         +.+++.|+..|.+++|++...+
T Consensus       450 SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l  519 (555)
T KOG1587|consen  450 SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESL  519 (555)
T ss_pred             cCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCchh
Confidence            9976 466677789999999983                         4579999999999999997544

>KOG1272|consensus

Probab=99.16  E-value=6.9e-11  Score=96.83  Aligned_cols=89  Identities=22%  Similarity=0.340  Sum_probs=74.4

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCCC-------
Q psy16881        119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA-------  191 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~-------  191 (222)
                      +.+..+.-+|-+.++=+|...|+|.+|.-++.+.+..+..|..+|.+++++++|++++|++.|+.++|||++.       
T Consensus       252 G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~  331 (545)
T KOG1272|consen  252 GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY  331 (545)
T ss_pred             CccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence            4455566678888899999999999999998888888889999999999999999999999999999999851       


Q ss_pred             -------------CeEEEeeCCCcEEEEe
Q psy16881        192 -------------TLLASGSNDKTVTIWD  207 (222)
Q Consensus       192 -------------~~l~s~~~d~~i~iwd  207 (222)
                                   ..+.+.|....+.||.
T Consensus       332 ~tp~~a~~ls~SqkglLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  332 RTPHPASNLSLSQKGLLALSYGDHVQIWK  360 (545)
T ss_pred             ecCCCccccccccccceeeecCCeeeeeh
Confidence                         1244455566799994

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=3.9e-09  Score=89.84  Aligned_cols=180  Identities=13%  Similarity=0.131  Sum_probs=103.2

Q ss_pred             ccceEEEEEcCCCCeEEEecCC---CeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee-eeeeEee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDD---ETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF-VKQIIPT  102 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  102 (222)
                      ...+...+|||||+.|+..+.+   .+|++||+.++.........++...       ..++++....++... ......+
T Consensus       203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~-------~~wSPDG~~La~~~~~~g~~~Iy  275 (429)
T PRK01742        203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGA-------PAFSPDGSRLAFASSKDGVLNIY  275 (429)
T ss_pred             CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCc-------eeECCCCCEEEEEEecCCcEEEE
Confidence            4568889999999999887654   3799999987653222111111110       112222222222211 1111111


Q ss_pred             eeeeeccCCccccccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCC-ceEEEeccCCccEEEEEEcCCCCEEEEeeC
Q psy16881        103 RVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS-VDKTVKLWDVPSL-TCIKTLESHTRYVTCCTFSCDDSLLASGSN  180 (222)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~-~dg~I~iwd~~~~-~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~  180 (222)
                      ...........+..+...+....|+|+|+.++..+ .++...||++... .....+ .+..  ....|+|+|+.|+.++.
T Consensus       276 ~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~  352 (429)
T PRK01742        276 VMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMING  352 (429)
T ss_pred             EEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcC
Confidence            11111122223334556677899999998666544 5788888876432 222222 3333  35679999999988877


Q ss_pred             CCeEEEEeCC---------------------CCeEEEeeCCCcEEEEeC---CCCccccCC
Q psy16881        181 DKTVTIWDML---------------------ATLLASGSNDKTVTIWDM---RGNLSVDVP  217 (222)
Q Consensus       181 D~~i~lwd~~---------------------~~~l~s~~~d~~i~iwd~---~~~~~~~~~  217 (222)
                      ++ +.+||+.                     +.+++.++.++.+++|++   .+.....++
T Consensus       353 ~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~  412 (429)
T PRK01742        353 DN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP  412 (429)
T ss_pred             CC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence            65 4558863                     346888888887777654   455555443

>KOG3881|consensus

Probab=99.15  E-value=2.3e-09  Score=86.31  Aligned_cols=94  Identities=17%  Similarity=0.263  Sum_probs=80.0

Q ss_pred             CEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCC-ceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC------
Q psy16881        120 AVTSVRFNHK--SSLLVSGSVDKTVKLWDVPSL-TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML------  190 (222)
Q Consensus       120 ~i~~l~~~~~--~~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~------  190 (222)
                      +++.+.|-+.  ...|++++.-+.+|+||++.+ .++..+.--+..|+++...|.++.|++|-.-+.+..||++      
T Consensus       204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g  283 (412)
T KOG3881|consen  204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLG  283 (412)
T ss_pred             eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeec
Confidence            4556777655  678999999999999999854 5677887778889999999999999999999999999985      


Q ss_pred             ------------------CCeEEEeeCCCcEEEEeCCC-Ccc
Q psy16881        191 ------------------ATLLASGSNDKTVTIWDMRG-NLS  213 (222)
Q Consensus       191 ------------------~~~l~s~~~d~~i~iwd~~~-~~~  213 (222)
                                        .+++|++|-|+.+||+|+++ .+.
T Consensus       284 ~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  284 CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             cccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence                              25899999999999999985 443

>KOG0650|consensus

Probab=99.13  E-value=2.2e-10  Score=96.51  Aligned_cols=131  Identities=24%  Similarity=0.320  Sum_probs=106.0

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      ..+.|.++.|.|...+|+++.. ..|+|||+....++.+.-                                       
T Consensus       565 skG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~---------------------------------------  604 (733)
T KOG0650|consen  565 SKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLL---------------------------------------  604 (733)
T ss_pred             cCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHh---------------------------------------
Confidence            3677999999999998888764 789999987654432220                                       


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS-LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTV  184 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i  184 (222)
                                .-...|..++++|.|..++.|+.|+.+..+|+.- .+..+.+..|...+++|+|++.=+++++|+.|+++
T Consensus       605 ----------tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv  674 (733)
T KOG0650|consen  605 ----------TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTV  674 (733)
T ss_pred             ----------cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcE
Confidence                      0123467788999999999999999999999963 35567778899999999999999999999999999


Q ss_pred             EEEeC------------------------------------CCCeEEEeeCCCcEEEE
Q psy16881        185 TIWDM------------------------------------LATLLASGSNDKTVTIW  206 (222)
Q Consensus       185 ~lwd~------------------------------------~~~~l~s~~~d~~i~iw  206 (222)
                      .|+.-                                    ..+.|.|++.|++|++|
T Consensus       675 ~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  675 IVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             EEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            99852                                    13579999999999998

>KOG2110|consensus

Probab=99.11  E-value=7.1e-08  Score=77.37  Aligned_cols=96  Identities=24%  Similarity=0.371  Sum_probs=79.4

Q ss_pred             ccCCCEEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCe-EEEEeCC--
Q psy16881        116 RHTSAVTSVRFNHKSSLLVSGS--VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKT-VTIWDML--  190 (222)
Q Consensus       116 ~h~~~i~~l~~~~~~~~l~sg~--~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~-i~lwd~~--  190 (222)
                      .+...+..++++..+.+++--+  ..|.|.|||+.+-+.+..+.+|+..+.|++|+++|.+|||||+.|+ |||+.+.  
T Consensus       127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G  206 (391)
T KOG2110|consen  127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG  206 (391)
T ss_pred             CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence            3455566777777777776543  3678999999999999999999999999999999999999999985 6788763  


Q ss_pred             -----------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        191 -----------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       191 -----------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                                             ..+|+++|..++|++|.+..-
T Consensus       207 ~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  207 QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence                                   468999999999999998743

>KOG1517|consensus

Probab=99.10  E-value=7.5e-09  Score=92.53  Aligned_cols=181  Identities=17%  Similarity=0.226  Sum_probs=109.9

Q ss_pred             eEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee----
Q psy16881         30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG----  105 (222)
Q Consensus        30 v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  105 (222)
                      -+.+.|+|=...++++..--.|++||.++++....+.....-...++.... ....++.....+.....+..|+.-    
T Consensus      1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~l-iNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLEL-INEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeee-ecccchhheeeeccCceEEEeccccccc
Confidence            455678887778888887789999999988876554322211111111110 000111112222223334444210    


Q ss_pred             -------eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc-CCccEEEEEEcC-CCCEEE
Q psy16881        106 -------VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES-HTRYVTCCTFSC-DDSLLA  176 (222)
Q Consensus       106 -------~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~-~~~~V~~~~~s~-~~~~l~  176 (222)
                             .|......+.+..+.=.-+.|.....++++++.-..|||||....+++..+.. .+..|++++-+. .|++|+
T Consensus      1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred             CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence                   11111111111111113357777666777777788999999988777766643 344577777653 579999


Q ss_pred             EeeCCCeEEEEeCC-----------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        177 SGSNDKTVTIWDML-----------------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       177 s~s~D~~i~lwd~~-----------------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      .|-.||.+++||.+                             -..|+||+.||.|++||+|.+
T Consensus      1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence            99999999999974                             124999999999999999974

>KOG1240|consensus

Probab=99.08  E-value=6.7e-09  Score=93.96  Aligned_cols=92  Identities=23%  Similarity=0.368  Sum_probs=71.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec-cCCccEEEEEEcC---CCCEEEEee--CCCeEEEEeCC-
Q psy16881        118 TSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE-SHTRYVTCCTFSC---DDSLLASGS--NDKTVTIWDML-  190 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~~~~V~~~~~s~---~~~~l~s~s--~D~~i~lwd~~-  190 (222)
                      .+.|++++.+|.++.+++|+..|.+.+||++=+..+.+++ ++..+|+-+..+|   +....++++  ..+.+.+|++. 
T Consensus      1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred             ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc
Confidence            3679999999999999999999999999999777776664 3445677666654   334555544  45789999872 


Q ss_pred             -----------------------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        191 -----------------------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       191 -----------------------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                                                               +.++.+|+.|.+|+.||..
T Consensus      1275 g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1275 GLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             CcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence                                                     3578899999999999986

>KOG2321|consensus

Probab=99.06  E-value=1.1e-08  Score=86.17  Aligned_cols=74  Identities=28%  Similarity=0.473  Sum_probs=62.4

Q ss_pred             cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc------CCc-----cEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES------HTR-----YVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       117 h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~------~~~-----~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                      ..+.++++..++....|+.|+.+|.|..||-++...+..+..      |..     .|+++.|+.+|-.+++|+.+|.+.
T Consensus       174 ~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~  253 (703)
T KOG2321|consen  174 DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVL  253 (703)
T ss_pred             ccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEE
Confidence            457899999999999999999999999999987665554432      222     389999999999999999999999


Q ss_pred             EEeCC
Q psy16881        186 IWDML  190 (222)
Q Consensus       186 lwd~~  190 (222)
                      +||++
T Consensus       254 iyDLR  258 (703)
T KOG2321|consen  254 IYDLR  258 (703)
T ss_pred             EEEcc
Confidence            99985

>KOG1064|consensus

Probab=99.05  E-value=4.9e-09  Score=97.89  Aligned_cols=185  Identities=19%  Similarity=0.255  Sum_probs=119.7

Q ss_pred             eeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         24 VHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        24 ~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      .|+-..|+++.-+|...+-+||+.||.|++|.-..+..+..+...+.  .+++.   ..++..............+..|.
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr---~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTR---SRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhh---hhhcccCCceeeeccCCceeecc
Confidence            45577899988889999999999999999998777666655543332  22111   11111111111111222222222


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCCCEEEEE---eCCCcEEEEeCCC---CceEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSG---SVDKTVKLWDVPS---LTCIKTLESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg---~~dg~I~iwd~~~---~~~~~~~~~~~~~V~~~~~s~~~~~l~s  177 (222)
                      ..  .........|........|-.  ..++++   +.++.+.+||+.-   ..++.  ..|...++++++-|..++|++
T Consensus      2280 ~~--pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllis 2353 (2439)
T KOG1064|consen 2280 AS--PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLIS 2353 (2439)
T ss_pred             cC--CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEe
Confidence            11  111122234555556666543  334554   3577899999852   23344  678889999999999999999


Q ss_pred             eeCCCeEEEEeCC-------------CCeEEEeeCCCcEEEEeCC-CCccccCCCC
Q psy16881        178 GSNDKTVTIWDML-------------ATLLASGSNDKTVTIWDMR-GNLSVDVPLN  219 (222)
Q Consensus       178 ~s~D~~i~lwd~~-------------~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~  219 (222)
                      |+.+|.+++||++             ..++++++..|.|+||+++ -.+...+|.+
T Consensus      2354 ggr~G~v~l~D~rqrql~h~~~~~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQALDTREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred             cCCcCcEEEeehHHHHHHHHhhhhhhhheeeccCcccceEEEEccccchhhcCchh
Confidence            9999999999985             3578999999999999998 3455666543

>KOG1538|consensus

Probab=99.03  E-value=1.9e-09  Score=92.27  Aligned_cols=130  Identities=25%  Similarity=0.388  Sum_probs=93.7

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeec
Q psy16881         29 NMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYG  108 (222)
Q Consensus        29 ~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (222)
                      .|..++|-|||..|+.+. +.++.+||..++..+.                                             
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llq---------------------------------------------   47 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQ---------------------------------------------   47 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCccccc---------------------------------------------
Confidence            588899999999776654 4689999987665442                                             


Q ss_pred             cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEE-
Q psy16881        109 QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW-  187 (222)
Q Consensus       109 ~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lw-  187 (222)
                          .+.+|++.|.+++|+.+|+.++||+.|+.|.+|.-+-.. +-.. .|.+.|.|+.|+|....|++.+-. ..-+| 
T Consensus        48 ----tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS  120 (1081)
T KOG1538|consen   48 ----PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWS  120 (1081)
T ss_pred             ----ccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeee-ccCCeeeEeecCchHHHhhhcchh-hccccC
Confidence                235799999999999999999999999999999754211 1122 477788888888888777776622 12333 


Q ss_pred             --------------------eCCCCeEEEeeCCCcEEEEeCCCC
Q psy16881        188 --------------------DMLATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       188 --------------------d~~~~~l~s~~~d~~i~iwd~~~~  211 (222)
                                          .-.+.+++-|-.||+|.|=+-.++
T Consensus       121 ~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE  164 (1081)
T KOG1538|consen  121 PEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE  164 (1081)
T ss_pred             hhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC
Confidence                                333567777777777777654444

>KOG1524|consensus

Probab=99.02  E-value=3.5e-09  Score=88.51  Aligned_cols=60  Identities=18%  Similarity=0.401  Sum_probs=45.0

Q ss_pred             cccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCC
Q psy16881        113 TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS  173 (222)
Q Consensus       113 ~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~  173 (222)
                      .+..|.+.|.+-.|+|+|.-++++++||.|+||. +++-+...+......|+|++|.|+++
T Consensus        99 sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~  158 (737)
T KOG1524|consen   99 SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSN  158 (737)
T ss_pred             hhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCC
Confidence            4567999999999999999999999999999998 34443334444445566666666544

>KOG1409|consensus

Probab=99.02  E-value=9.7e-09  Score=81.68  Aligned_cols=154  Identities=21%  Similarity=0.331  Sum_probs=98.6

Q ss_pred             eeeccceEEEEEcCCCCeEEEecCCCeEEEEeC-CCCceEEeeccCCCcceeeccceecCccCCcc-cceee-eeeeeeE
Q psy16881         24 VHIGSNMRCVRFSPDTRLLATGGDDETVTVWRS-DDLSLIMETNDRGHTQGRIEGWGRVPACPLCR-TRVFS-TFVKQII  100 (222)
Q Consensus        24 ~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~  100 (222)
                      ..|.+.|..+-|+-..+.+++.+.|..+. |-- +.+..+      ++..  +....   ....+. ...+- ....++.
T Consensus       111 ~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~l------g~Y~--~~~~~---t~~~~d~~~~fvGd~~gqvt  178 (404)
T KOG1409|consen  111 LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRL------GGYN--FETPA---SALQFDALYAFVGDHSGQIT  178 (404)
T ss_pred             hhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcc------cceE--eeccC---CCCceeeEEEEecccccceE
Confidence            34578888888988888889999988774 432 211111      0000  00000   000000 00000 0111111


Q ss_pred             eeeee-eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eEEEeccCCccEEEEEEcCCCCEEEEe
Q psy16881        101 PTRVG-VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT-CIKTLESHTRYVTCCTFSCDDSLLASG  178 (222)
Q Consensus       101 ~~~~~-~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~-~~~~~~~~~~~V~~~~~s~~~~~l~s~  178 (222)
                      ..... ...+....+.+|...+.+++|.+..+.+++|..|..+.+||+.-++ ...+..+|.+.|..+..-+.-+.+.++
T Consensus       179 ~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~  258 (404)
T KOG1409|consen  179 MLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISC  258 (404)
T ss_pred             EEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeec
Confidence            11111 1112234567899999999999999999999999999999996443 345778999999999888888999999


Q ss_pred             eCCCeEEEEeC
Q psy16881        179 SNDKTVTIWDM  189 (222)
Q Consensus       179 s~D~~i~lwd~  189 (222)
                      +.||.|.+||+
T Consensus       259 ~edg~i~~w~m  269 (404)
T KOG1409|consen  259 GEDGGIVVWNM  269 (404)
T ss_pred             cCCCeEEEEec
Confidence            99999999997

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.00  E-value=2.1e-07  Score=76.43  Aligned_cols=177  Identities=13%  Similarity=0.162  Sum_probs=99.3

Q ss_pred             cceEEEEEcCCCCeEEEecC-CCeEEEEeCCC-CceEEeeccCCCcceeeccceecCccCCcccceeee-eeeeeEeeee
Q psy16881         28 SNMRCVRFSPDTRLLATGGD-DETVTVWRSDD-LSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFST-FVKQIIPTRV  104 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~-Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  104 (222)
                      +....++|+|+|++|++++. ++.|.+|++++ +...............   +. ....+..+...... ..+.+..++.
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~---~~-~~~~p~g~~l~v~~~~~~~v~v~d~  155 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGC---HS-ANIDPDNRTLWVPCLKEDRIRLFTL  155 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcc---cE-eEeCCCCCEEEEeeCCCCEEEEEEE
Confidence            45678999999998887764 89999999863 2111100000000000   00 11111111111111 1223333332


Q ss_pred             eeeccC----C--ccccccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC--C--ceEEEecc------CCccEEEEE
Q psy16881        105 GVYGQD----S--ETVGRHTSAVTSVRFNHKSSLLVSGSV-DKTVKLWDVPS--L--TCIKTLES------HTRYVTCCT  167 (222)
Q Consensus       105 ~~~~~~----~--~~~~~h~~~i~~l~~~~~~~~l~sg~~-dg~I~iwd~~~--~--~~~~~~~~------~~~~V~~~~  167 (222)
                      ...+..    .  .... .......+.|+|++++++++.. ++.|.+||++.  +  +.+.++..      +......+.
T Consensus       156 ~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~  234 (330)
T PRK11028        156 SDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH  234 (330)
T ss_pred             CCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence            211100    0  0011 1233567899999999988876 89999999873  2  22333322      112334688


Q ss_pred             EcCCCCEEEEee-CCCeEEEEeCC--------------------------CCeEEEee-CCCcEEEEeCC
Q psy16881        168 FSCDDSLLASGS-NDKTVTIWDML--------------------------ATLLASGS-NDKTVTIWDMR  209 (222)
Q Consensus       168 ~s~~~~~l~s~s-~D~~i~lwd~~--------------------------~~~l~s~~-~d~~i~iwd~~  209 (222)
                      ++|++++++++. .++.|.+|++.                          +.+|+++. .+++|.+|++.
T Consensus       235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            999999999875 46899999862                          24566555 48899999874

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.00  E-value=1.4e-07  Score=77.54  Aligned_cols=155  Identities=13%  Similarity=0.147  Sum_probs=85.8

Q ss_pred             ccceEEEEEcCCCCeEEEec-CCCeEEEEeCCC-CceE--EeeccCCCcceeeccceecCccCCcccceeeee-eeeeEe
Q psy16881         27 GSNMRCVRFSPDTRLLATGG-DDETVTVWRSDD-LSLI--METNDRGHTQGRIEGWGRVPACPLCRTRVFSTF-VKQIIP  101 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs-~Dg~i~iwd~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  101 (222)
                      .+....++++|++++|++++ .++.|.+|++.+ +...  .... .+..+   .   .+.+.+..+....+.. ...+..
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p---~---~i~~~~~g~~l~v~~~~~~~v~v  106 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP---T---HISTDHQGRFLFSASYNANCVSV  106 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc---e---EEEECCCCCEEEEEEcCCCeEEE
Confidence            46678899999999887654 588999999863 3321  1111 11000   0   0111111211111111 122222


Q ss_pred             eeeeeecc---CCccccccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceEE-------EeccCCccEEEEEEcC
Q psy16881        102 TRVGVYGQ---DSETVGRHTSAVTSVRFNHKSSLLVSGS-VDKTVKLWDVPSLTCIK-------TLESHTRYVTCCTFSC  170 (222)
Q Consensus       102 ~~~~~~~~---~~~~~~~h~~~i~~l~~~~~~~~l~sg~-~dg~I~iwd~~~~~~~~-------~~~~~~~~V~~~~~s~  170 (222)
                      ++....+.   ....+. +......+.++|+++++++++ .++.|.+||+++...+.       ..... .....+.|+|
T Consensus       107 ~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~p  184 (330)
T PRK11028        107 SPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHP  184 (330)
T ss_pred             EEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEECC
Confidence            22211110   011111 223456788999999876554 56899999997633221       11122 2356799999


Q ss_pred             CCCEEEEeeC-CCeEEEEeCC
Q psy16881        171 DDSLLASGSN-DKTVTIWDML  190 (222)
Q Consensus       171 ~~~~l~s~s~-D~~i~lwd~~  190 (222)
                      +|++++++.. +++|.+|++.
T Consensus       185 dg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        185 NQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             CCCEEEEEecCCCEEEEEEEe
Confidence            9999988876 8899999873

>KOG4547|consensus

Probab=98.98  E-value=2.4e-08  Score=84.20  Aligned_cols=152  Identities=18%  Similarity=0.240  Sum_probs=104.1

Q ss_pred             cCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCccee--eccceecCcc-C---Cc-----------ccceeeeeeee
Q psy16881         36 SPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGR--IEGWGRVPAC-P---LC-----------RTRVFSTFVKQ   98 (222)
Q Consensus        36 spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~---~~-----------~~~~~~~~~~~   98 (222)
                      +|-+.++|....||.+++|+....+...++.+..+..+.  ...|+..... +   .+           ...+.++....
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            456778999999999999999998888887665554433  3334321100 0   00           00011111111


Q ss_pred             eEeeeeeeeccCCc--cccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEE
Q psy16881         99 IIPTRVGVYGQDSE--TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA  176 (222)
Q Consensus        99 ~~~~~~~~~~~~~~--~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~  176 (222)
                      +....+ ..++...  .-.+|-+.|+++.++.+-..++|++.|+.+.+|+.++.+....+......+.+++.+|||..++
T Consensus        82 v~~ys~-~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~  160 (541)
T KOG4547|consen   82 VLLYSV-AGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL  160 (541)
T ss_pred             EEEEEe-cCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence            111110 0011111  1246889999999888888999999999999999999988889988888899999999999999


Q ss_pred             EeeCCCeEEEEeCC
Q psy16881        177 SGSNDKTVTIWDML  190 (222)
Q Consensus       177 s~s~D~~i~lwd~~  190 (222)
                      +|+  ++|++||+.
T Consensus       161 ~as--~~ik~~~~~  172 (541)
T KOG4547|consen  161 TAS--RQIKVLDIE  172 (541)
T ss_pred             ecc--ceEEEEEcc
Confidence            887  779999984

>KOG0974|consensus

Probab=98.97  E-value=5.5e-09  Score=92.91  Aligned_cols=113  Identities=21%  Similarity=0.324  Sum_probs=93.6

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      .+.+..+.++-||+++++.|+|.++|+|++++.+....                                          
T Consensus       175 eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~------------------------------------------  212 (967)
T KOG0974|consen  175 EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC------------------------------------------  212 (967)
T ss_pred             CCceEEEEEccCCcEEEEEecCcceeeeecccccccCc------------------------------------------
Confidence            67799999999999999999999999999986432210                                          


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCc-cEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTR-YVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~-~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                            .--+|+..|..+.+++.  .++|++.|-+.++|+.+ ++.+..+.+|.. -|+.+..++....++|++.|+.++
T Consensus       213 ------~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk  283 (967)
T KOG0974|consen  213 ------TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLK  283 (967)
T ss_pred             ------ccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchh
Confidence                  01258999999999986  89999999999999765 444556666654 488999999999999999999999


Q ss_pred             EEeCC
Q psy16881        186 IWDML  190 (222)
Q Consensus       186 lwd~~  190 (222)
                      +||+.
T Consensus       284 ~~~l~  288 (967)
T KOG0974|consen  284 LWDLN  288 (967)
T ss_pred             hhhhh
Confidence            99985

>KOG1963|consensus

Probab=98.96  E-value=2.8e-08  Score=87.08  Aligned_cols=122  Identities=24%  Similarity=0.367  Sum_probs=92.9

Q ss_pred             eeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEe
Q psy16881         22 GSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIP  101 (222)
Q Consensus        22 ~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (222)
                      .+.||.-.+.|.++||+++++|+|-.||+|.+|.--..           ....                    .....  
T Consensus       200 ~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-----------~~~~--------------------~t~t~--  246 (792)
T KOG1963|consen  200 ITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-----------SDDS--------------------ETCTL--  246 (792)
T ss_pred             hhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-----------cccc--------------------ccceE--
Confidence            34667777999999999999999999999999952110           0000                    00011  


Q ss_pred             eeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCC
Q psy16881        102 TRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSND  181 (222)
Q Consensus       102 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D  181 (222)
                                  +.=|...|++++|+++|.+++||+.++.+-+|.+.+++. +-+.--.+.|..+.+|||+.+.+...+|
T Consensus       247 ------------lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLPRLgs~I~~i~vS~ds~~~sl~~~D  313 (792)
T KOG1963|consen  247 ------------LHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLPRLGSPILHIVVSPDSDLYSLVLED  313 (792)
T ss_pred             ------------EEecccccceeEEecCCceEeecccceEEEEEeecCCCc-ccccccCCeeEEEEEcCCCCeEEEEecC
Confidence                        112778899999999999999999999999999987762 1122224678999999999999999999


Q ss_pred             CeEEEEeC
Q psy16881        182 KTVTIWDM  189 (222)
Q Consensus       182 ~~i~lwd~  189 (222)
                      .+|.+-..
T Consensus       314 NqI~li~~  321 (792)
T KOG1963|consen  314 NQIHLIKA  321 (792)
T ss_pred             ceEEEEec
Confidence            99999865

>KOG0644|consensus

Probab=98.94  E-value=7.1e-10  Score=96.71  Aligned_cols=97  Identities=30%  Similarity=0.586  Sum_probs=87.7

Q ss_pred             cccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCCC-
Q psy16881        113 TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA-  191 (222)
Q Consensus       113 ~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~-  191 (222)
                      .+.+|...|.|+.|+..|.++++|+.|..+|||...+..|+....||+..|+.++.+....+++++|.|..|++|-+.. 
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence            3557999999999999999999999999999999999999999999999999999999999999999999999998741 


Q ss_pred             ------------------CeEEEeeCCCcEEEEeCC
Q psy16881        192 ------------------TLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       192 ------------------~~l~s~~~d~~i~iwd~~  209 (222)
                                        .=.++++.||++++||.+
T Consensus       265 ~pvsvLrghtgavtaiafsP~~sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  265 APVSVLRGHTGAVTAIAFSPRASSSDDGTCRIWDAR  300 (1113)
T ss_pred             chHHHHhccccceeeeccCccccCCCCCceEecccc
Confidence                              113467889999999998

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.94  E-value=4.4e-09  Score=58.28  Aligned_cols=39  Identities=36%  Similarity=0.740  Sum_probs=36.5

Q ss_pred             CceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEe
Q psy16881        150 LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD  188 (222)
Q Consensus       150 ~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd  188 (222)
                      ++++.++.+|...|++++|+|++++|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            357888999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0290|consensus

Probab=98.92  E-value=3.9e-08  Score=76.74  Aligned_cols=154  Identities=14%  Similarity=0.160  Sum_probs=90.5

Q ss_pred             eccceEEEEEcCCCC-eEEEecCCCeEEEEeCCCCceEEeeccCCC-cceeeccceecCcc-CCcccce-eeeeeeeeEe
Q psy16881         26 IGSNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSLIMETNDRGH-TQGRIEGWGRVPAC-PLCRTRV-FSTFVKQIIP  101 (222)
Q Consensus        26 ~~~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~  101 (222)
                      |...|..++|...+. .+|+.|.||.||+||+......-..-+... ......    +... .+....+ ++.....+.+
T Consensus       195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlR----LswnkqDpnymATf~~dS~~V~i  270 (364)
T KOG0290|consen  195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLR----LSWNKQDPNYMATFAMDSNKVVI  270 (364)
T ss_pred             cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCccee----eccCcCCchHHhhhhcCCceEEE
Confidence            456799999998765 689999999999999875432211110111 000000    1111 1111111 1122223333


Q ss_pred             eeeeeeccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCce------EEEeccCCccEEEEEEcCC-CC
Q psy16881        102 TRVGVYGQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTC------IKTLESHTRYVTCCTFSCD-DS  173 (222)
Q Consensus       102 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~------~~~~~~~~~~V~~~~~s~~-~~  173 (222)
                      .++.......-.+++|++.|+.++|.|.. ..+.|++.|..+.|||+.+...      +.... -..+|.-+.|++. ..
T Consensus       271 LDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~D  349 (364)
T KOG0290|consen  271 LDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPD  349 (364)
T ss_pred             EEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCC
Confidence            33333333445678899999999999876 5899999999999999975322      11222 3456889999854 45


Q ss_pred             EEEEeeCCCeEE
Q psy16881        174 LLASGSNDKTVT  185 (222)
Q Consensus       174 ~l~s~s~D~~i~  185 (222)
                      .|+.+. ++++.
T Consensus       350 wiai~~-~kkle  360 (364)
T KOG0290|consen  350 WIAICF-GKKLE  360 (364)
T ss_pred             EEEEEe-cCeee
Confidence            555444 33443

>KOG1272|consensus

Probab=98.92  E-value=4.2e-09  Score=86.56  Aligned_cols=168  Identities=20%  Similarity=0.285  Sum_probs=119.0

Q ss_pred             EEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCC
Q psy16881         32 CVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDS  111 (222)
Q Consensus        32 ~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (222)
                      .+.|+.+|+.|+.|+.-|.|..+|..+..+..+.+-...    +..   +.+  .....+++.......-.+ ...+.+.
T Consensus       134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Et----v~D---v~~--LHneq~~AVAQK~y~yvY-D~~GtEl  203 (545)
T KOG1272|consen  134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMET----VRD---VTF--LHNEQFFAVAQKKYVYVY-DNNGTEL  203 (545)
T ss_pred             eeeecCCccEEEecCCccceeeeecccceeeeeeehhhh----hhh---hhh--hcchHHHHhhhhceEEEe-cCCCcEE
Confidence            368899999999999999999999998888776632211    110   000  011111111111111000 1111121


Q ss_pred             ccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC-
Q psy16881        112 ETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML-  190 (222)
Q Consensus       112 ~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~-  190 (222)
                      ..+.. ...|..+.|-|.--.|++++..|.++.-|+..++.+.++......+..+.-+|...++-+|...|+|.+|... 
T Consensus       204 HClk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s  282 (545)
T KOG1272|consen  204 HCLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS  282 (545)
T ss_pred             eehhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence            22222 3457778888887889999999999999999999999888777888888889999999999999999999853 


Q ss_pred             ----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        191 ----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       191 ----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                                            +.++|++|.|+.++|||+|.
T Consensus       283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~  324 (545)
T KOG1272|consen  283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN  324 (545)
T ss_pred             cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecc
Confidence                                  57899999999999999983

>KOG1587|consensus

Probab=98.91  E-value=1.2e-07  Score=82.09  Aligned_cols=181  Identities=19%  Similarity=0.173  Sum_probs=109.8

Q ss_pred             ccceEEEEEcCC-CCeEEEecCCCeEEEEeCCCCce--EEeeccCCC-cceeeccceecCccCCcccceeeee-eeeeEe
Q psy16881         27 GSNMRCVRFSPD-TRLLATGGDDETVTVWRSDDLSL--IMETNDRGH-TQGRIEGWGRVPACPLCRTRVFSTF-VKQIIP  101 (222)
Q Consensus        27 ~~~v~~l~~spd-g~~l~tgs~Dg~i~iwd~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  101 (222)
                      .+.|.|+.|+|. ..+|+.|..+|+|-+||+..+..  ........+ ....+...-.+.  ......+++.. +..+..
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~--~~~~~~f~s~ssDG~i~~  319 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ--NEHNTEFFSLSSDGSICS  319 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec--cCCCCceEEEecCCcEee
Confidence            577999999985 56788999999999999987654  221111111 111111111111  11112233322 334555


Q ss_pred             eeeeeecc-----CCcccc------ccCCCEEEEEEcCCC-CEEEEEeCCCcEEEE---eCCCCc-----eEEEeccCCc
Q psy16881        102 TRVGVYGQ-----DSETVG------RHTSAVTSVRFNHKS-SLLVSGSVDKTVKLW---DVPSLT-----CIKTLESHTR  161 (222)
Q Consensus       102 ~~~~~~~~-----~~~~~~------~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iw---d~~~~~-----~~~~~~~~~~  161 (222)
                      |++.....     ......      .-...+++++|.+.. +.|+.|+++|.|.--   +.+...     .......|..
T Consensus       320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g  399 (555)
T KOG1587|consen  320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG  399 (555)
T ss_pred             eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence            54321111     000000      123568889998765 579999999998762   333222     1234456788


Q ss_pred             cEEEEEEcCCCCEEEEeeCCCeEEEEeCC-------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        162 YVTCCTFSCDDSLLASGSNDKTVTIWDML-------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       162 ~V~~~~~s~~~~~l~s~s~D~~i~lwd~~-------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      .|+++.++|=+..++..+.|-+++||.-.                         ..+++++..||.|.+|||.
T Consensus       400 ~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl  472 (555)
T KOG1587|consen  400 PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL  472 (555)
T ss_pred             ceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence            89999999977666655559999999753                         3478999999999999996

>KOG4227|consensus

Probab=98.89  E-value=8.5e-08  Score=77.71  Aligned_cols=124  Identities=16%  Similarity=0.129  Sum_probs=91.0

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ   98 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (222)
                      .+.+|+ |.+.|.|++|....++|.+|+.+++|..-|+++...+..++.                               
T Consensus        98 ~~~~~~-H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~-------------------------------  145 (609)
T KOG4227|consen   98 GVMEHP-HRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANE-------------------------------  145 (609)
T ss_pred             eeccCc-cccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecc-------------------------------
Confidence            344553 457899999999999999999999999999886543322210                               


Q ss_pred             eEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eE--EEeccCCccEEEEEEcCCC-CE
Q psy16881         99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT-CI--KTLESHTRYVTCCTFSCDD-SL  174 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~-~~--~~~~~~~~~V~~~~~s~~~-~~  174 (222)
                                      ....+.|..+..+|..+.+++.+.+|.|.+||.+..+ ..  .......+....+.|+|-. .+
T Consensus       146 ----------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  146 ----------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             ----------------cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence                            1124577888889999999999999999999998654 21  1222233456778899865 46


Q ss_pred             EEEeeCCCeEEEEeCC
Q psy16881        175 LASGSNDKTVTIWDML  190 (222)
Q Consensus       175 l~s~s~D~~i~lwd~~  190 (222)
                      |++++..+-+.+||++
T Consensus       210 i~~~~~~~G~~~~D~R  225 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDRR  225 (609)
T ss_pred             EEeccccCCCCceeec
Confidence            6788888889999973

>KOG1523|consensus

Probab=98.88  E-value=5.4e-08  Score=76.79  Aligned_cols=139  Identities=20%  Similarity=0.247  Sum_probs=106.3

Q ss_pred             eeccceEEEEEcCCCCeEEEecCCCeEEEEeCC-CCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSD-DLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      .|...|..|+|+|.++.|++++.|..-++|... ++.-..+.                                      
T Consensus        53 ~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptl--------------------------------------   94 (361)
T KOG1523|consen   53 EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTL--------------------------------------   94 (361)
T ss_pred             hhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccce--------------------------------------
Confidence            357889999999999999999999999999752 21111000                                      


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce--EE--EeccCCccEEEEEEcCCCCEEEEee
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC--IK--TLESHTRYVTCCTFSCDDSLLASGS  179 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~--~~--~~~~~~~~V~~~~~s~~~~~l~s~s  179 (222)
                               ++-.+....+++.|+|.++.|++|+.-..|.||=+++..-  +.  .-+.+.+.|.++.|+|++-+|+.||
T Consensus        95 ---------vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs  165 (361)
T KOG1523|consen   95 ---------VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS  165 (361)
T ss_pred             ---------eEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence                     1123567789999999999999999999999987764321  11  2235677899999999999999999


Q ss_pred             CCCeEEEEeCC-----------------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        180 NDKTVTIWDML-----------------------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       180 ~D~~i~lwd~~-----------------------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      .|++.+++..-                                         +..|+-.+.|+++.+=|-.+
T Consensus       166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~  237 (361)
T KOG1523|consen  166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG  237 (361)
T ss_pred             cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence            99999998641                                         34577778888888888764

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.88  E-value=2e-07  Score=70.82  Aligned_cols=91  Identities=21%  Similarity=0.286  Sum_probs=64.8

Q ss_pred             CCCEEEEEEcCCCCEEEE--EeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCC---CeEEEEeCCCC
Q psy16881        118 TSAVTSVRFNHKSSLLVS--GSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSND---KTVTIWDMLAT  192 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~s--g~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D---~~i~lwd~~~~  192 (222)
                      .++|..++|+|+|+.++.  |..++.|.+||++ .+.+..+.  ...+..+.|+|+|++|++++.+   |.+.+||+...
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~  135 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK  135 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            456999999999987544  4467899999997 66666664  4567889999999999998754   67999999754


Q ss_pred             eEEEeeC--CCcEEEEeCCCC
Q psy16881        193 LLASGSN--DKTVTIWDMRGN  211 (222)
Q Consensus       193 ~l~s~~~--d~~i~iwd~~~~  211 (222)
                      ..+...+  +-+.--|+..+.
T Consensus       136 ~~i~~~~~~~~t~~~WsPdGr  156 (194)
T PF08662_consen  136 KKISTFEHSDATDVEWSPDGR  156 (194)
T ss_pred             EEeeccccCcEEEEEEcCCCC
Confidence            3333222  223445666554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.86  E-value=1.5e-06  Score=74.14  Aligned_cols=181  Identities=12%  Similarity=0.081  Sum_probs=100.6

Q ss_pred             ccceEEEEEcCCCCeEEEecC---CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee---eeE
Q psy16881         27 GSNMRCVRFSPDTRLLATGGD---DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK---QII  100 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  100 (222)
                      ...+...+|||||+.|+..+.   +..|.+|++.+++........++...       ..++++....++.....   .+.
T Consensus       198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~-------~~~SPDG~~La~~~~~~g~~~I~  270 (429)
T PRK03629        198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGA-------PAFSPDGSKLAFALSKTGSLNLY  270 (429)
T ss_pred             CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCC-------eEECCCCCEEEEEEcCCCCcEEE
Confidence            356888999999998886542   45789999887654322211111100       11222222222221111   122


Q ss_pred             eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeC-CCcEEEE--eCCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881        101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV-DKTVKLW--DVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~-dg~I~iw--d~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s  177 (222)
                      .++.  .......+..+...+....|+|+|+.++..+. ++...||  |+.+++. ..+..+...+....|+|+|+.|+.
T Consensus       271 ~~d~--~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~  347 (429)
T PRK03629        271 VMDL--ASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVM  347 (429)
T ss_pred             EEEC--CCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEE
Confidence            2221  11111122223345678899999997766665 3455555  6665543 333333344567889999999987


Q ss_pred             eeCC---CeEEEEeCC---------------------CCeEEEeeCCCc---EEEEeCCCCccccCC
Q psy16881        178 GSND---KTVTIWDML---------------------ATLLASGSNDKT---VTIWDMRGNLSVDVP  217 (222)
Q Consensus       178 ~s~D---~~i~lwd~~---------------------~~~l~s~~~d~~---i~iwd~~~~~~~~~~  217 (222)
                      .+.+   ..|.+||+.                     +.+++.++.++.   +.++++.+.....++
T Consensus       348 ~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~  414 (429)
T PRK03629        348 VSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP  414 (429)
T ss_pred             EEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECc
Confidence            6543   357778863                     345777776653   778888766555443

>KOG2139|consensus

Probab=98.83  E-value=1.4e-07  Score=75.68  Aligned_cols=112  Identities=13%  Similarity=0.236  Sum_probs=81.0

Q ss_pred             cceEEEEEcCCCCeEEEecC-CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         28 SNMRCVRFSPDTRLLATGGD-DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ..|.++++.+||..|++++- |..|+|||++++..+.-.                                         
T Consensus       196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-----------------------------------------  234 (445)
T KOG2139|consen  196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-----------------------------------------  234 (445)
T ss_pred             ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-----------------------------------------
Confidence            67999999999999998887 678999999865432110                                         


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI  186 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l  186 (222)
                              ..-.+.+.-+.|+|++.+++.++.|+..++|+..+..-..........|...+|+|+|+.|..++. +.-++
T Consensus       235 --------~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~l  305 (445)
T KOG2139|consen  235 --------PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRL  305 (445)
T ss_pred             --------ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceE
Confidence                    011345677999999999999999999999976544333333334558999999999987765442 23345


Q ss_pred             EeC
Q psy16881        187 WDM  189 (222)
Q Consensus       187 wd~  189 (222)
                      |.+
T Consensus       306 ysl  308 (445)
T KOG2139|consen  306 YSL  308 (445)
T ss_pred             EEE
Confidence            543

>KOG2139|consensus

Probab=98.82  E-value=3.5e-07  Score=73.43  Aligned_cols=156  Identities=16%  Similarity=0.230  Sum_probs=96.7

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ...++.++|++.=--+|++..|-+|++|+-+. +........  .+..+...   ...+.+.....-.....++.|....
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~--sQrnvtcl---awRPlsaselavgCr~gIciW~~s~  171 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSV--SQRNVTCL---AWRPLSASELAVGCRAGICIWSDSR  171 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecch--hhcceeEE---EeccCCcceeeeeecceeEEEEcCc
Confidence            45678889988545578899999999998665 222111111  11111111   1112222222222333445543211


Q ss_pred             ecc-----------CCccc--cccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCceEEEeccCCccEEEEEEcCCC
Q psy16881        107 YGQ-----------DSETV--GRHTSAVTSVRFNHKSSLLVSGSV-DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD  172 (222)
Q Consensus       107 ~~~-----------~~~~~--~~h~~~i~~l~~~~~~~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~  172 (222)
                      ...           ...++  .+| ..|++++|+++|..+++++. |..|+|||..++.++....-.-..+.-+.|||++
T Consensus       172 tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdg  250 (445)
T KOG2139|consen  172 TLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDG  250 (445)
T ss_pred             ccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCC
Confidence            111           01111  123 57999999999999999876 5679999999887765442233457789999999


Q ss_pred             CEEEEeeCCCeEEEEeC
Q psy16881        173 SLLASGSNDKTVTIWDM  189 (222)
Q Consensus       173 ~~l~s~s~D~~i~lwd~  189 (222)
                      .+|+.++.|+..++|+.
T Consensus       251 d~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  251 DVLFAATCDAVFRLWQE  267 (445)
T ss_pred             CEEEEecccceeeeehh
Confidence            99999999999999954

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.81  E-value=1.1e-06  Score=75.00  Aligned_cols=156  Identities=17%  Similarity=0.062  Sum_probs=84.4

Q ss_pred             ccceEEEEEcCCCCeEEEecCC---CeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee-eeeeEee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDD---ETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF-VKQIIPT  102 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  102 (222)
                      ...+...+|+|||+.|+..+.+   ..|.+||+.+++........+...    .   ..++++.....+... ......+
T Consensus       195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~----~---~~~SPDG~~la~~~~~~g~~~Iy  267 (427)
T PRK02889        195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS----A---PAWSPDGRTLAVALSRDGNSQIY  267 (427)
T ss_pred             CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc----c---eEECCCCCEEEEEEccCCCceEE
Confidence            4667889999999998877653   459999998776443221111110    0   111222222222211 1111111


Q ss_pred             eeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeC--CCCceEEEeccCCccEEEEEEcCCCCEEEEee
Q psy16881        103 RVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV-DKTVKLWDV--PSLTCIKTLESHTRYVTCCTFSCDDSLLASGS  179 (222)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~-dg~I~iwd~--~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s  179 (222)
                      ...........+..+........|+|+|+.++..+. ++...||.+  .+++. ..+..+........|||+|+.|+..+
T Consensus       268 ~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s  346 (427)
T PRK02889        268 TVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYIS  346 (427)
T ss_pred             EEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEE
Confidence            111111122223334444566789999997776554 466667754  44432 22222223344578999999998776


Q ss_pred             CCC---eEEEEeCC
Q psy16881        180 NDK---TVTIWDML  190 (222)
Q Consensus       180 ~D~---~i~lwd~~  190 (222)
                      .++   .|.+||+.
T Consensus       347 ~~~g~~~I~v~d~~  360 (427)
T PRK02889        347 RVGGAFKLYVQDLA  360 (427)
T ss_pred             ccCCcEEEEEEECC
Confidence            554   68999974

>KOG1334|consensus

Probab=98.77  E-value=7.1e-08  Score=79.91  Aligned_cols=160  Identities=20%  Similarity=0.215  Sum_probs=97.5

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      .+-|..|-|...|..|++||+|.+|.+||...+.....+. .+|....++ -++++++. +..........++....+..
T Consensus       142 ~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-SGH~~NvfQ-aKFiP~s~-d~ti~~~s~dgqvr~s~i~~  218 (559)
T KOG1334|consen  142 KGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE-SGHCNNVFQ-AKFIPFSG-DRTIVTSSRDGQVRVSEILE  218 (559)
T ss_pred             CCccceeeecccCceeeccCccceEEeehhhccCcccccc-cccccchhh-hhccCCCC-CcCceeccccCceeeeeecc
Confidence            5668889999999999999999999999987766554331 334332222 11333332 12222222222322221111


Q ss_pred             ec-cC-CccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEE---EeccCCc---cEEEEEEcCCCC-EEE
Q psy16881        107 YG-QD-SETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIK---TLESHTR---YVTCCTFSCDDS-LLA  176 (222)
Q Consensus       107 ~~-~~-~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~---~~~~~~~---~V~~~~~s~~~~-~l~  176 (222)
                      .+ .+ ...+..|.++|.-++.-|.. +.|++++.|+.+.=.|+++.....   ....+..   .-.+++.+|... .++
T Consensus       219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~fa  298 (559)
T KOG1334|consen  219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFA  298 (559)
T ss_pred             ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccc
Confidence            11 11 13456799999999998877 479999999999999988654322   2222332   234566666544 667


Q ss_pred             EeeCCCeEEEEeC
Q psy16881        177 SGSNDKTVTIWDM  189 (222)
Q Consensus       177 s~s~D~~i~lwd~  189 (222)
                      +++.|..+++||.
T Consensus       299 VgG~dqf~RvYD~  311 (559)
T KOG1334|consen  299 VGGSDQFARVYDQ  311 (559)
T ss_pred             cCChhhhhhhhcc
Confidence            7777777777774

>KOG3881|consensus

Probab=98.77  E-value=1.2e-07  Score=76.67  Aligned_cols=112  Identities=15%  Similarity=0.165  Sum_probs=91.4

Q ss_pred             EEEEEcCC--CCeEEEecCCCeEEEEeCCCCceEE-eeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881         31 RCVRFSPD--TRLLATGGDDETVTVWRSDDLSLIM-ETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY  107 (222)
Q Consensus        31 ~~l~~spd--g~~l~tgs~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (222)
                      ..+.|-+.  ...||++..-+.|++||...++... ++                                          
T Consensus       206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f------------------------------------------  243 (412)
T KOG3881|consen  206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF------------------------------------------  243 (412)
T ss_pred             ccceecCCCCCceEEEEecceeEEEecCcccCcceeEe------------------------------------------
Confidence            44677766  6778999999999999976543211 11                                          


Q ss_pred             ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE-eccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881        108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKT-LESHTRYVTCCTFSCDDSLLASGSNDKTVTI  186 (222)
Q Consensus       108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~-~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l  186 (222)
                             .--..+|.++...|.++.+++|..-|.+..+|+++++.... +.+-...|+++..+|..++|++++=|+.++|
T Consensus       244 -------d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRI  316 (412)
T KOG3881|consen  244 -------DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRI  316 (412)
T ss_pred             -------ccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEE
Confidence                   00145678888899999999999999999999999988765 7777888999999999999999999999999


Q ss_pred             EeCCC
Q psy16881        187 WDMLA  191 (222)
Q Consensus       187 wd~~~  191 (222)
                      +|+.+
T Consensus       317 hD~kt  321 (412)
T KOG3881|consen  317 HDIKT  321 (412)
T ss_pred             eeccc
Confidence            99975

>KOG0322|consensus

Probab=98.77  E-value=1.2e-08  Score=78.62  Aligned_cols=71  Identities=28%  Similarity=0.531  Sum_probs=59.4

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY  107 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (222)
                      .-|..+++-||++++||+++|+.||+|...+...+.                                            
T Consensus       252 pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA--------------------------------------------  287 (323)
T KOG0322|consen  252 PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA--------------------------------------------  287 (323)
T ss_pred             CCccceEEccCCcEEeecccCCcEEEEEeccCCchh--------------------------------------------
Confidence            346778899999999999999999999765432221                                            


Q ss_pred             ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy16881        108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV  147 (222)
Q Consensus       108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~  147 (222)
                           ++.-|.+.|.+++|+|+.+.++.++.|+.|.+|++
T Consensus       288 -----VLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  288 -----VLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             -----hhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence                 23458999999999999999999999999999986

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.76  E-value=3.3e-08  Score=54.70  Aligned_cols=34  Identities=38%  Similarity=0.811  Sum_probs=30.7

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEe
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWR   55 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd   55 (222)
                      ++.+|   .+.|.+++|+|++++|++|+.|++|++||
T Consensus         6 ~~~~h---~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    6 TFRGH---SSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEESS---SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEcCC---CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            44555   89999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3914|consensus

Probab=98.76  E-value=1e-07  Score=77.18  Aligned_cols=79  Identities=24%  Similarity=0.477  Sum_probs=64.6

Q ss_pred             CccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe-ccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881        111 SETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL-ESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       111 ~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~-~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      ...+-+|-.-++.++++|++++++++..|..|||-.+..-..+..+ -||+..|..+++-+ +..|+++|.|+++++||+
T Consensus       144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDI  222 (390)
T ss_pred             cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEec
Confidence            3445578999999999999999999999999999877644344443 47999999988764 455899999999999998


Q ss_pred             C
Q psy16881        190 L  190 (222)
Q Consensus       190 ~  190 (222)
                      .
T Consensus       223 ~  223 (390)
T KOG3914|consen  223 T  223 (390)
T ss_pred             c
Confidence            4

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.75  E-value=2.6e-06  Score=72.71  Aligned_cols=180  Identities=12%  Similarity=0.069  Sum_probs=98.0

Q ss_pred             ccceEEEEEcCCCCeEEEecCC---CeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee-e--eeE
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDD---ETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV-K--QII  100 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~  100 (222)
                      ...+...+|+|||+.|+..+.+   ..|.+|++.+++........+...    .   ..++++....++.... .  .+.
T Consensus       203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~----~---~~~SpDG~~l~~~~s~~g~~~Iy  275 (433)
T PRK04922        203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING----A---PSFSPDGRRLALTLSRDGNPEIY  275 (433)
T ss_pred             CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc----C---ceECCCCCEEEEEEeCCCCceEE
Confidence            4567888999999998877643   469999998765432221111110    0   1122222222222111 1  122


Q ss_pred             eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeC-CCc--EEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881        101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV-DKT--VKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~-dg~--I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s  177 (222)
                      .++.  .......+..+.......+|+|+|+.++..+. +|.  |.++|+.+++.. .+..+.......+|+|+|+.|+.
T Consensus       276 ~~d~--~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~  352 (433)
T PRK04922        276 VMDL--GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAM  352 (433)
T ss_pred             EEEC--CCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEE
Confidence            2211  11111222233444456899999997776654 444  556677665432 22222334456899999999987


Q ss_pred             eeCCC---eEEEEeCC---------------------CCeEEEeeCC---CcEEEEeCCCCccccC
Q psy16881        178 GSNDK---TVTIWDML---------------------ATLLASGSND---KTVTIWDMRGNLSVDV  216 (222)
Q Consensus       178 ~s~D~---~i~lwd~~---------------------~~~l~s~~~d---~~i~iwd~~~~~~~~~  216 (222)
                      .+.++   .|.+||+.                     +.+++..+.+   ..|.++++.+.....+
T Consensus       353 ~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l  418 (433)
T PRK04922        353 VHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRL  418 (433)
T ss_pred             EECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEc
Confidence            65432   68899973                     2344444432   3578888876544433

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.74  E-value=6e-06  Score=70.58  Aligned_cols=153  Identities=14%  Similarity=0.050  Sum_probs=86.5

Q ss_pred             ccceEEEEEcCCCCeEEEecC---CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee---eeeE
Q psy16881         27 GSNMRCVRFSPDTRLLATGGD---DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV---KQII  100 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  100 (222)
                      ...+...+|+|||+.|+..+.   +..|.+|++.++.........+.    ...   ..++++....++....   ..+.
T Consensus       201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~----~~~---~~~SPDG~~la~~~~~~g~~~Iy  273 (435)
T PRK05137        201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGM----TFA---PRFSPDGRKVVMSLSQGGNTDIY  273 (435)
T ss_pred             CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCc----ccC---cEECCCCCEEEEEEecCCCceEE
Confidence            567899999999998887654   46899999987654322111110    000   1112222222222111   1121


Q ss_pred             eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881        101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV-DK--TVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~-dg--~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s  177 (222)
                      ..+  ........+..+........|+|+|+.++..+. +|  .|.++|+..++. ..+..+...+....|+|+|+.|+.
T Consensus       274 ~~d--~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~  350 (435)
T PRK05137        274 TMD--LRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAF  350 (435)
T ss_pred             EEE--CCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEE
Confidence            111  111111223334444567899999997776663 33  577788775543 333333444566889999999987


Q ss_pred             eeCC---CeEEEEeC
Q psy16881        178 GSND---KTVTIWDM  189 (222)
Q Consensus       178 ~s~D---~~i~lwd~  189 (222)
                      .+.+   ..|.+||+
T Consensus       351 ~~~~~~~~~i~~~d~  365 (435)
T PRK05137        351 TKQGGGQFSIGVMKP  365 (435)
T ss_pred             EEcCCCceEEEEEEC
Confidence            6543   36777876

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.69  E-value=5e-06  Score=69.42  Aligned_cols=131  Identities=17%  Similarity=0.208  Sum_probs=85.1

Q ss_pred             EEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccC
Q psy16881         31 RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQD  110 (222)
Q Consensus        31 ~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (222)
                      ..+.|+|||+++.+++.||.|.++|+.+.+.+.+..                                            
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~--------------------------------------------   75 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK--------------------------------------------   75 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--------------------------------------------
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe--------------------------------------------
Confidence            346799999999999999999999998776554431                                            


Q ss_pred             CccccccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceEEEeccC-------CccEEEEEEcCCCCEEEEeeCC-
Q psy16881        111 SETVGRHTSAVTSVRFNHKSSLLVSGS-VDKTVKLWDVPSLTCIKTLESH-------TRYVTCCTFSCDDSLLASGSND-  181 (222)
Q Consensus       111 ~~~~~~h~~~i~~l~~~~~~~~l~sg~-~dg~I~iwd~~~~~~~~~~~~~-------~~~V~~~~~s~~~~~l~s~s~D-  181 (222)
                            -......++++++|++++.+. .++.+.++|.++.+.++.+...       ...+..+..++..+.++..-.| 
T Consensus        76 ------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~  149 (369)
T PF02239_consen   76 ------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT  149 (369)
T ss_dssp             -------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT
T ss_pred             ------cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC
Confidence                  012235688999999888765 6899999999999888877532       2356677778888755555444 


Q ss_pred             CeEEEEeCC------------------------CCe-EEEeeCCCcEEEEeCCCC
Q psy16881        182 KTVTIWDML------------------------ATL-LASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       182 ~~i~lwd~~------------------------~~~-l~s~~~d~~i~iwd~~~~  211 (222)
                      +.|-+-|..                        ..+ +++.-..+.|-++|+++.
T Consensus       150 ~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~  204 (369)
T PF02239_consen  150 GEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG  204 (369)
T ss_dssp             TEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             CeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccc
Confidence            666666642                        233 444455668889998743

...

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.69  E-value=9.4e-07  Score=75.35  Aligned_cols=147  Identities=15%  Similarity=0.089  Sum_probs=80.3

Q ss_pred             eEEEEEcCCCCeEEEec-CCCeEEEE--eCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee-eeeEeeeee
Q psy16881         30 MRCVRFSPDTRLLATGG-DDETVTVW--RSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV-KQIIPTRVG  105 (222)
Q Consensus        30 v~~l~~spdg~~l~tgs-~Dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  105 (222)
                      ...++|+|||+.|+.++ .+|.+.||  ++.++..........    ....   ..+.++.....+.... .....+...
T Consensus       250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~----~~~~---~~wSpDG~~i~f~s~~~g~~~I~~~~  322 (429)
T PRK01742        250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAG----NNTE---PSWSPDGQSILFTSDRSGSPQVYRMS  322 (429)
T ss_pred             cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCC----CcCC---EEECCCCCEEEEEECCCCCceEEEEE
Confidence            44689999999888764 68877666  554443322111000    0000   1112222222222211 111122111


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                      ........+ .+..  ....|+|+|+.++..+.++. .+||+.+++........  ......|+|+|+.|++++.++.+.
T Consensus       323 ~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~i-~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~  396 (429)
T PRK01742        323 ASGGGASLV-GGRG--YSAQISADGKTLVMINGDNV-VKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGK  396 (429)
T ss_pred             CCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCCE-EEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCce
Confidence            111111111 2222  35779999999888877654 45999887654322222  235678999999999999999888


Q ss_pred             EEeC
Q psy16881        186 IWDM  189 (222)
Q Consensus       186 lwd~  189 (222)
                      +|++
T Consensus       397 ~l~~  400 (429)
T PRK01742        397 VLQL  400 (429)
T ss_pred             EEEE
Confidence            8875

>KOG1963|consensus

Probab=98.68  E-value=1.3e-06  Score=76.99  Aligned_cols=113  Identities=17%  Similarity=0.259  Sum_probs=73.5

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      .+.|.+++|++||.+|++||.+|.+-+|.++++..  ++                                         
T Consensus       251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--qf-----------------------------------------  287 (792)
T KOG1963|consen  251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--QF-----------------------------------------  287 (792)
T ss_pred             ccccceeEEecCCceEeecccceEEEEEeecCCCc--cc-----------------------------------------
Confidence            67899999999999999999999999998775431  11                                         


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc-----------CCccEEEEEEcCCCCEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES-----------HTRYVTCCTFSCDDSLL  175 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~-----------~~~~V~~~~~s~~~~~l  175 (222)
                             +.+-.++|..+.++|++...+....|+.|.+....+......+.+           .....+-++++|.-+.+
T Consensus       288 -------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~  360 (792)
T KOG1963|consen  288 -------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL  360 (792)
T ss_pred             -------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence                   112356677778888887777777788777766543322222211           12234455566655555


Q ss_pred             EEeeCCCeEEEEeC
Q psy16881        176 ASGSNDKTVTIWDM  189 (222)
Q Consensus       176 ~s~s~D~~i~lwd~  189 (222)
                      +-.+.-+.|.+||+
T Consensus       361 vln~~~g~vQ~ydl  374 (792)
T KOG1963|consen  361 VLNGHPGHVQFYDL  374 (792)
T ss_pred             eecCCCceEEEEec
Confidence            55555666666654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.67  E-value=7.5e-06  Score=64.07  Aligned_cols=160  Identities=19%  Similarity=0.238  Sum_probs=84.8

Q ss_pred             EEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcce----eeccceecCccCC---cccceeeeeeeeeEeee
Q psy16881         31 RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQG----RIEGWGRVPACPL---CRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        31 ~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  103 (222)
                      |.++||||+.+||.+...|+|++||+....+. ...+.-....    .+.+.........   +.....-+.......-.
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~  125 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL  125 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence            67999999999999999999999998764433 2221110100    0110000000000   00000001111111111


Q ss_pred             eee-eccCC---c--cc-cccCCCEEEEEEcCCCCEEEEEeCCC-----------cEEEEeCCCCce----E--------
Q psy16881        104 VGV-YGQDS---E--TV-GRHTSAVTSVRFNHKSSLLVSGSVDK-----------TVKLWDVPSLTC----I--------  153 (222)
Q Consensus       104 ~~~-~~~~~---~--~~-~~h~~~i~~l~~~~~~~~l~sg~~dg-----------~I~iwd~~~~~~----~--------  153 (222)
                      +.. ..+..   .  .+ ..+...|+++.|+|.-+.|+.|+...           -+.-|.+-++..    +        
T Consensus       126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~  205 (282)
T PF15492_consen  126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDIT  205 (282)
T ss_pred             EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccc
Confidence            100 00111   1  11 12467899999999888777765421           245565422110    0        


Q ss_pred             ---------E--E-----e-ccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCCC
Q psy16881        154 ---------K--T-----L-ESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA  191 (222)
Q Consensus       154 ---------~--~-----~-~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~  191 (222)
                               +  .     . ....+.|..|++||+|..||+...+|.|.+|++..
T Consensus       206 ~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs  260 (282)
T PF15492_consen  206 ASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS  260 (282)
T ss_pred             ccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence                     0  0     0 12345688899999999999999999999999853

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.66  E-value=1e-05  Score=68.55  Aligned_cols=154  Identities=14%  Similarity=0.065  Sum_probs=85.7

Q ss_pred             ccceEEEEEcCCCCeEEEecCC---CeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee---eeE
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDD---ETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK---QII  100 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  100 (222)
                      ...+...+|+|||++|+.+..+   ..|++|++.++.........+..    ..   ..+.++....++.....   .+.
T Consensus       189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~----~~---~~~spDg~~l~~~~~~~~~~~i~  261 (417)
T TIGR02800       189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMN----GA---PAFSPDGSKLAVSLSKDGNPDIY  261 (417)
T ss_pred             CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCc----cc---eEECCCCCEEEEEECCCCCccEE
Confidence            3457778899999999877654   47999999876543222111110    00   01112222222211111   111


Q ss_pred             eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881        101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV-DK--TVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~-dg--~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s  177 (222)
                      ..+.  .......+..+........|+++++.++..+. ++  .|.++|+.+++. ..+..+...+....|+|+|++|+.
T Consensus       262 ~~d~--~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~  338 (417)
T TIGR02800       262 VMDL--DGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAF  338 (417)
T ss_pred             EEEC--CCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEE
Confidence            1111  11111122223333445789999987766554 33  477778876653 334444555677899999999998


Q ss_pred             eeCCC---eEEEEeCC
Q psy16881        178 GSNDK---TVTIWDML  190 (222)
Q Consensus       178 ~s~D~---~i~lwd~~  190 (222)
                      ++.++   .|.+||+.
T Consensus       339 ~~~~~~~~~i~~~d~~  354 (417)
T TIGR02800       339 VHREGGGFNIAVMDLD  354 (417)
T ss_pred             EEccCCceEEEEEeCC
Confidence            87775   78888863

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4714|consensus

Probab=98.66  E-value=9.3e-08  Score=73.62  Aligned_cols=88  Identities=24%  Similarity=0.406  Sum_probs=72.1

Q ss_pred             CCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCce-EEEeccCCccEEEEEEcC-CCCEEEEeeCCCeEEEEeCCCCeEE
Q psy16881        119 SAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTC-IKTLESHTRYVTCCTFSC-DDSLLASGSNDKTVTIWDMLATLLA  195 (222)
Q Consensus       119 ~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~-~~~~~~~~~~V~~~~~s~-~~~~l~s~s~D~~i~lwd~~~~~l~  195 (222)
                      ..|.+++-+|.. +.++.|+.||.+.+||.++... +..+.+|+.+|+.+-|+| ++..|+++++||.+--||..+.+|.
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~  259 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLS  259 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEE
Confidence            348888888876 4788999999999999987643 345688999999999998 4678999999999999999888877


Q ss_pred             EeeCCCcEEEE
Q psy16881        196 SGSNDKTVTIW  206 (222)
Q Consensus       196 s~~~d~~i~iw  206 (222)
                      .+-....+..|
T Consensus       260 i~~~~s~~s~W  270 (319)
T KOG4714|consen  260 ISNQASVISSW  270 (319)
T ss_pred             ecCcccccccc
Confidence            55555567777

>KOG2315|consensus

Probab=98.65  E-value=1.3e-06  Score=73.60  Aligned_cols=79  Identities=19%  Similarity=0.446  Sum_probs=60.6

Q ss_pred             CEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCCCCeEEE
Q psy16881        120 AVTSVRFNHKSSLLVSGSV---DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLAS  196 (222)
Q Consensus       120 ~i~~l~~~~~~~~l~sg~~---dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~~~l~s  196 (222)
                      +=+++-|+|.|++++.++-   -|.+.|||..+.+++.++.....  +-+.|+|+|.+++|++..-.+++          
T Consensus       313 pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrv----------  380 (566)
T KOG2315|consen  313 PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRV----------  380 (566)
T ss_pred             CccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEe----------
Confidence            3467889999999888875   46799999999999988877554  45789999999999987655554          


Q ss_pred             eeCCCcEEEEeCCCCcc
Q psy16881        197 GSNDKTVTIWDMRGNLS  213 (222)
Q Consensus       197 ~~~d~~i~iwd~~~~~~  213 (222)
                         |+.++||+..+.++
T Consensus       381 ---dNg~KiwhytG~~l  394 (566)
T KOG2315|consen  381 ---DNGIKIWHYTGSLL  394 (566)
T ss_pred             ---cCCeEEEEecCcee
Confidence               66666666665543

>KOG2111|consensus

Probab=98.64  E-value=2.3e-06  Score=67.73  Aligned_cols=77  Identities=22%  Similarity=0.394  Sum_probs=65.6

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeE-EEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETV-TVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      |.+.|.|++.+.+|.+|||+|.-|++ ||||..+++.+.|+..                                     
T Consensus       180 H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR-------------------------------------  222 (346)
T KOG2111|consen  180 HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR-------------------------------------  222 (346)
T ss_pred             ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec-------------------------------------
Confidence            47889999999999999999999987 9999998887766521                                     


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS  149 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~  149 (222)
                                +.....|.+++|+|+..+++.+|.-|++-|+.++.
T Consensus       223 ----------G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  223 ----------GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             ----------CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence                      01245689999999999999999999999998864

>KOG1354|consensus

Probab=98.64  E-value=7.6e-07  Score=71.17  Aligned_cols=147  Identities=20%  Similarity=0.365  Sum_probs=96.8

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ...|.+|.|..+|.+||||..+|.|-+|.-+.... .+++..                        ......        
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-~ey~~~------------------------t~fqsh--------   71 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-GEYNFQ------------------------TEFQSH--------   71 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccc-cceeee------------------------eeeecc--------
Confidence            45689999999999999999999999995432111 011000                        000000        


Q ss_pred             eccCCc---cccccCCCEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCc--e------------------EEEe-----
Q psy16881        107 YGQDSE---TVGRHTSAVTSVRFNHKSS--LLVSGSVDKTVKLWDVPSLT--C------------------IKTL-----  156 (222)
Q Consensus       107 ~~~~~~---~~~~h~~~i~~l~~~~~~~--~l~sg~~dg~I~iwd~~~~~--~------------------~~~~-----  156 (222)
                       ..+..   .+ .-..+|+.+.|.++++  .++..+.|++|++|-+....  .                  +..+     
T Consensus        72 -epEFDYLkSl-eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~  149 (433)
T KOG1354|consen   72 -EPEFDYLKSL-EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDL  149 (433)
T ss_pred             -Ccccchhhhh-hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccc
Confidence             00000   00 0245677888887764  67777889999999764211  1                  0000     


Q ss_pred             -----------ccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC--------------------------------CCe
Q psy16881        157 -----------ESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML--------------------------------ATL  193 (222)
Q Consensus       157 -----------~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~--------------------------------~~~  193 (222)
                                 .+|..-|.+++++.|+..++++ +|-.|.+|++.                                -++
T Consensus       150 ~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~  228 (433)
T KOG1354|consen  150 EVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNV  228 (433)
T ss_pred             eeeeeeeeeccccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccE
Confidence                       2466668899999999888877 57789999873                                146


Q ss_pred             EEEeeCCCcEEEEeCC
Q psy16881        194 LASGSNDKTVTIWDMR  209 (222)
Q Consensus       194 l~s~~~d~~i~iwd~~  209 (222)
                      ++-++..|+|+|-|+|
T Consensus       229 f~YSSSKGtIrLcDmR  244 (433)
T KOG1354|consen  229 FVYSSSKGTIRLCDMR  244 (433)
T ss_pred             EEEecCCCcEEEeech
Confidence            7778889999999998

>KOG4547|consensus

Probab=98.61  E-value=1.4e-06  Score=73.69  Aligned_cols=115  Identities=17%  Similarity=0.236  Sum_probs=89.9

Q ss_pred             eeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         24 VHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        24 ~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      ..|-+.|.++.++.+...|-+++.|+.+-.|++.+......+.                                     
T Consensus        99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-------------------------------------  141 (541)
T KOG4547|consen   99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK-------------------------------------  141 (541)
T ss_pred             CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec-------------------------------------
Confidence            5567889998888888889999999999999876544433321                                     


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCC-----CCE-EEE
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCD-----DSL-LAS  177 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~-----~~~-l~s  177 (222)
                                  ..+..+.+++++|+++++++|+  +.|++||+++.+.+..|.+|..+|++++|--.     |.+ |.+
T Consensus       142 ------------~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss  207 (541)
T KOG4547|consen  142 ------------EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS  207 (541)
T ss_pred             ------------cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeec
Confidence                        1234466788999999999987  79999999999999999999999999999655     444 445


Q ss_pred             eeCCCeEEEEeC
Q psy16881        178 GSNDKTVTIWDM  189 (222)
Q Consensus       178 ~s~D~~i~lwd~  189 (222)
                      +..+.-+.+|=+
T Consensus       208 a~~~r~i~~w~v  219 (541)
T KOG4547|consen  208 AAAERGITVWVV  219 (541)
T ss_pred             cccccceeEEEE
Confidence            666677778744

>KOG2321|consensus

Probab=98.60  E-value=9.4e-07  Score=74.83  Aligned_cols=124  Identities=19%  Similarity=0.311  Sum_probs=87.2

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ++.+.++..++-..+|++|..||+|.+||..+...+.......+          +                       . 
T Consensus       175 ~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~----------v-----------------------~-  220 (703)
T KOG2321|consen  175 SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS----------V-----------------------N-  220 (703)
T ss_pred             cccceeeeecCccceEEecccCceEEEecchhhhhheeeecccc----------c-----------------------C-
Confidence            57799999999999999999999999999875443322210000          0                       0 


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE-EeccCCccEEEEEEcCC--CCEEEEeeCCCe
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIK-TLESHTRYVTCCTFSCD--DSLLASGSNDKT  183 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~-~~~~~~~~V~~~~~s~~--~~~l~s~s~D~~  183 (222)
                          ..........|+++.|+.+|-.++.|+.+|.+.|||+++.+.+. .-.+..-+|..+.|-+.  ++.|+|. ....
T Consensus       221 ----s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~  295 (703)
T KOG2321|consen  221 ----SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRI  295 (703)
T ss_pred             ----CCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHH
Confidence                00001134568999999989999999999999999999876643 33445566778888654  4555543 4568


Q ss_pred             EEEEeC
Q psy16881        184 VTIWDM  189 (222)
Q Consensus       184 i~lwd~  189 (222)
                      ++|||-
T Consensus       296 ~kiWd~  301 (703)
T KOG2321|consen  296 LKIWDE  301 (703)
T ss_pred             hhhccc
Confidence            999985

>KOG1409|consensus

Probab=98.59  E-value=2.5e-06  Score=68.27  Aligned_cols=172  Identities=22%  Similarity=0.366  Sum_probs=103.6

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCC----ceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDL----SLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT  102 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (222)
                      ...++++.+.++.+.|+.|-..|++.=|.+..-    ......  ..| ..++..   +.+ ........+...++...|
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~--~~h-~~~v~~---~if-~~~~e~V~s~~~dk~~~~  140 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDY--LAH-QARVSA---IVF-SLTHEWVLSTGKDKQFAW  140 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhh--hhh-hcceee---EEe-cCCceeEEEeccccceEE
Confidence            567888999999999999999999987755421    111110  001 111110   000 001111111111222222


Q ss_pred             eeeeeccCCccccccC--CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CceEEEeccCCccEEEEEEcCCCCEEEEe
Q psy16881        103 RVGVYGQDSETVGRHT--SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS--LTCIKTLESHTRYVTCCTFSCDDSLLASG  178 (222)
Q Consensus       103 ~~~~~~~~~~~~~~h~--~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~--~~~~~~~~~~~~~V~~~~~s~~~~~l~s~  178 (222)
                      .....   ...++++.  ...+.+.+...  +.+.|...|.|.+-.+..  -..+.++.+|...+.+++|++...+|+++
T Consensus       141 hc~e~---~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg  215 (404)
T KOG1409|consen  141 HCTES---GNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSG  215 (404)
T ss_pred             Eeecc---CCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEec
Confidence            11100   01111111  11122222222  667777778877766543  45678899999999999999999999999


Q ss_pred             eCCCeEEEEeCC------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        179 SNDKTVTIWDML------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       179 s~D~~i~lwd~~------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      ..|..+..||+.                        +..+.|+++|+.|-+|+++-
T Consensus       216 ~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  216 ASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             cccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            999999999984                        45799999999999999973

>KOG0280|consensus

Probab=98.59  E-value=7.7e-07  Score=69.70  Aligned_cols=97  Identities=19%  Similarity=0.320  Sum_probs=79.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce--EEEeccCCccEEEEEEcCCC-CEEEEeeCCCeEEEEeCC-------
Q psy16881        121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC--IKTLESHTRYVTCCTFSCDD-SLLASGSNDKTVTIWDML-------  190 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~--~~~~~~~~~~V~~~~~s~~~-~~l~s~s~D~~i~lwd~~-------  190 (222)
                      ..++.|++.+..++++-.+|.+.+-+.+....  ++++++|+-+.+...|+... +++++|++|+.+.-||++       
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            35678888888899999999998666554433  45889999999999998644 588899999999999985       


Q ss_pred             -------------------CCeEEEeeCCCcEEEEeCC--CCccccCC
Q psy16881        191 -------------------ATLLASGSNDKTVTIWDMR--GNLSVDVP  217 (222)
Q Consensus       191 -------------------~~~l~s~~~d~~i~iwd~~--~~~~~~~~  217 (222)
                                         ...+++|+.|..|++||.|  +++.++-+
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~  251 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK  251 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc
Confidence                               2479999999999999998  66666544

>KOG1240|consensus

Probab=98.55  E-value=9.7e-07  Score=80.46  Aligned_cols=74  Identities=30%  Similarity=0.425  Sum_probs=57.6

Q ss_pred             ccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC-------ceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEE
Q psy16881        116 RHTSAVTSVRFNHK-SSLLVSGSVDKTVKLWDVPSL-------TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW  187 (222)
Q Consensus       116 ~h~~~i~~l~~~~~-~~~l~sg~~dg~I~iwd~~~~-------~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lw  187 (222)
                      .|...+..++.++. +.+|+||+.||+||+||++.-       ....++......+.++.+.+.+..+|+++.||.|.+.
T Consensus      1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred             hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence            46777777777655 489999999999999998641       1122333345668899999999999999999999998


Q ss_pred             eC
Q psy16881        188 DM  189 (222)
Q Consensus       188 d~  189 (222)
                      .+
T Consensus      1126 ~i 1127 (1431)
T KOG1240|consen 1126 RI 1127 (1431)
T ss_pred             Ec
Confidence            76

>KOG2695|consensus

Probab=98.47  E-value=4.7e-07  Score=72.36  Aligned_cols=120  Identities=18%  Similarity=0.301  Sum_probs=87.4

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      +++|.++.|...+.+|+.|+..|.|..+|+...       .++.....                                
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~r-------nqG~~~~a--------------------------------  292 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCR-------NQGNGWCA--------------------------------  292 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeec-------ccCCCcce--------------------------------
Confidence            567888888888888899999999988887532       01111000                                


Q ss_pred             eccCCccccccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCce---EEEeccCCccEEE--EEEcCCCCEEEEeeC
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTC---IKTLESHTRYVTC--CTFSCDDSLLASGSN  180 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~-~~~~l~sg~~dg~I~iwd~~~~~~---~~~~~~~~~~V~~--~~~s~~~~~l~s~s~  180 (222)
                           .. --|.+.|++++.-. +++++.+.+.+|+|++||++--++   +...++|-..-.-  +..++....|+++++
T Consensus       293 -----~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd  366 (425)
T KOG2695|consen  293 -----QR-LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD  366 (425)
T ss_pred             -----EE-EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccC
Confidence                 00 12788888887765 678888889999999999987666   8888888653322  334567788889999


Q ss_pred             CCeEEEEeCCC
Q psy16881        181 DKTVTIWDMLA  191 (222)
Q Consensus       181 D~~i~lwd~~~  191 (222)
                      |-..++|.++.
T Consensus       367 DcytRiWsl~~  377 (425)
T KOG2695|consen  367 DCYTRIWSLDS  377 (425)
T ss_pred             eeEEEEEeccc
Confidence            99999999863

>KOG0280|consensus

Probab=98.46  E-value=8.2e-06  Score=64.07  Aligned_cols=79  Identities=25%  Similarity=0.336  Sum_probs=63.9

Q ss_pred             ccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCC-CCceEEE-eccCCccEEEEEEcC-CCCEEEEeeCCCeEEEE
Q psy16881        112 ETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVP-SLTCIKT-LESHTRYVTCCTFSC-DDSLLASGSNDKTVTIW  187 (222)
Q Consensus       112 ~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~-~~~~~~~-~~~~~~~V~~~~~s~-~~~~l~s~s~D~~i~lw  187 (222)
                      ..++.|.-.+..+.|+... +.+++|+.|+.+.-||++ ..+.+.. .+-|...|.++.-+| ...+|+||+=|..|++|
T Consensus       159 q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~  238 (339)
T KOG0280|consen  159 QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVL  238 (339)
T ss_pred             ccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeee
Confidence            3567799999999997654 699999999999999998 3344433 456778888887765 57899999999999999


Q ss_pred             eCC
Q psy16881        188 DML  190 (222)
Q Consensus       188 d~~  190 (222)
                      |.+
T Consensus       239 DtR  241 (339)
T KOG0280|consen  239 DTR  241 (339)
T ss_pred             ehh
Confidence            986

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.44  E-value=0.00012  Score=62.36  Aligned_cols=154  Identities=16%  Similarity=0.058  Sum_probs=80.9

Q ss_pred             ccceEEEEEcCCCCeEEEecCC---CeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee---eeE
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDD---ETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK---QII  100 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  100 (222)
                      ...+...+|+|||+.|+..+.+   ..|.+|++.++.........+...    .   ..++++....++.....   .+.
T Consensus       198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~----~---~~~SpDG~~la~~~~~~g~~~Iy  270 (430)
T PRK00178        198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG----A---PAWSPDGSKLAFVLSKDGNPEIY  270 (430)
T ss_pred             CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC----C---eEECCCCCEEEEEEccCCCceEE
Confidence            4567888999999998776644   368888988765433221111110    0   11122222222221111   111


Q ss_pred             eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881        101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV-DK--TVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~-dg--~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s  177 (222)
                      ..+.  .......+..+........|+|+|+.++..+. ++  .|.++|+.+++... +...........|+|+|+.|+.
T Consensus       271 ~~d~--~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~  347 (430)
T PRK00178        271 VMDL--ASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVM  347 (430)
T ss_pred             EEEC--CCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEE
Confidence            1111  11111222233444556789999987665543 33  47677877665422 2211223345689999999987


Q ss_pred             eeCC-C--eEEEEeCC
Q psy16881        178 GSND-K--TVTIWDML  190 (222)
Q Consensus       178 ~s~D-~--~i~lwd~~  190 (222)
                      .+.+ +  .|.++|+.
T Consensus       348 ~~~~~~~~~l~~~dl~  363 (430)
T PRK00178        348 VHRQDGNFHVAAQDLQ  363 (430)
T ss_pred             EEccCCceEEEEEECC
Confidence            6643 3  57777863

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.43  E-value=2.4e-05  Score=66.81  Aligned_cols=152  Identities=12%  Similarity=0.082  Sum_probs=80.9

Q ss_pred             eEEEEEcCCCCeEEEe-cCCC--eEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee-eeEeeeee
Q psy16881         30 MRCVRFSPDTRLLATG-GDDE--TVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK-QIIPTRVG  105 (222)
Q Consensus        30 v~~l~~spdg~~l~tg-s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  105 (222)
                      +...+|+|||+.|+.. +.+|  .|.+||++++..........    ....   ..++++....++..... ....+...
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~----~~~~---~~wSPDG~~I~f~s~~~g~~~Iy~~d  317 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS----NNTE---PTWFPDSQNLAYTSDQAGRPQVYKVN  317 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCC----CcCc---eEECCCCCEEEEEeCCCCCceEEEEE
Confidence            4567899999988754 4455  58888987765443221110    0010   11222222233322211 11111111


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCC
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVD---KTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDK  182 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~  182 (222)
                      ..+.....+..+........|+|+|+.++..+.+   ..|.+||+.+++.. .+... .......|+|+|+.|+.++.++
T Consensus       318 ~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~  395 (429)
T PRK03629        318 INGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQG  395 (429)
T ss_pred             CCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCC
Confidence            1111111122223334568899999987766543   34888999877543 33322 1234678999999999988876


Q ss_pred             e---EEEEeCC
Q psy16881        183 T---VTIWDML  190 (222)
Q Consensus       183 ~---i~lwd~~  190 (222)
                      .   +.++++.
T Consensus       396 ~~~~l~~~~~~  406 (429)
T PRK03629        396 MGSVLNLVSTD  406 (429)
T ss_pred             CceEEEEEECC
Confidence            4   5556654

>KOG4497|consensus

Probab=98.43  E-value=1.2e-06  Score=69.66  Aligned_cols=70  Identities=14%  Similarity=0.315  Sum_probs=55.0

Q ss_pred             CEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCE-EEEeeCCCeEEEEeC
Q psy16881        120 AVTSVRFNHKSSLL-VSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSL-LASGSNDKTVTIWDM  189 (222)
Q Consensus       120 ~i~~l~~~~~~~~l-~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~-l~s~s~D~~i~lwd~  189 (222)
                      +|..+.|..+..++ -....++.|.+|++.+.+--.++......+.+.+|||+|+. |.+...|-.|.+|.+
T Consensus        50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL  121 (447)
T KOG4497|consen   50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSL  121 (447)
T ss_pred             HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEe
Confidence            45566777766544 44577889999999988777777777888999999999965 456778999999987

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.43  E-value=8.9e-05  Score=63.65  Aligned_cols=153  Identities=13%  Similarity=0.036  Sum_probs=77.8

Q ss_pred             ccceEEEEEcCCCCeEEEecCC-C--eEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee---eeE
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDD-E--TVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK---QII  100 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~D-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  100 (222)
                      ...+...+|||||+.|+..+.+ +  .|.+||+.++.........+...    .   ..++++....++.....   .+.
T Consensus       217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~----~---~~wSPDG~~La~~~~~~g~~~Iy  289 (448)
T PRK04792        217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING----A---PRFSPDGKKLALVLSKDGQPEIY  289 (448)
T ss_pred             CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC----C---eeECCCCCEEEEEEeCCCCeEEE
Confidence            3456778999999988866543 3  57888887665432211111100    0   11222222222221111   111


Q ss_pred             eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeC-CCc--EEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881        101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV-DKT--VKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~-dg~--I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s  177 (222)
                      ..+  ........+..+........|+|+++.++..+. ++.  |.++|+.+++... +..+.......+|+|+|+.|+.
T Consensus       290 ~~d--l~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~  366 (448)
T PRK04792        290 VVD--IATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIM  366 (448)
T ss_pred             EEE--CCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEE
Confidence            111  111111222233444567889999987665543 444  5566777665432 2212222345689999999887


Q ss_pred             eeC-CC--eEEEEeC
Q psy16881        178 GSN-DK--TVTIWDM  189 (222)
Q Consensus       178 ~s~-D~--~i~lwd~  189 (222)
                      .+. ++  .|.++|+
T Consensus       367 ~~~~~g~~~I~~~dl  381 (448)
T PRK04792        367 VNRTNGKFNIARQDL  381 (448)
T ss_pred             EEecCCceEEEEEEC
Confidence            654 34  3444565

>KOG2041|consensus

Probab=98.42  E-value=1.2e-06  Score=76.17  Aligned_cols=156  Identities=14%  Similarity=0.281  Sum_probs=104.3

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY  107 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (222)
                      ....|++|.....++|.|+.||.+++-++.+.+.....  ++        .+              .          ...
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~--~g--------la--------------a----------~sn   60 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNK--SG--------LA--------------A----------ASN   60 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccc--cc--------cc--------------c----------ccc
Confidence            44689999999999999999999999988753321111  00        00              0          000


Q ss_pred             ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe--ccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL--ESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~--~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                      ..-.+.+++|...|..+.|+...+.+-|...+|.|.+|=+-.+.-..+.  .-..+.|.+++|..+|..|.-.-+||.|.
T Consensus        61 LsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavI  140 (1189)
T KOG2041|consen   61 LSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVI  140 (1189)
T ss_pred             cchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEE
Confidence            1112356789999999999998899999999999999987655433222  12455688999998888776666666554


Q ss_pred             E--------EeC--CC------------CeEEEeeCCCcEEEEeCCCCccccCC
Q psy16881        186 I--------WDM--LA------------TLLASGSNDKTVTIWDMRGNLSVDVP  217 (222)
Q Consensus       186 l--------wd~--~~------------~~l~s~~~d~~i~iwd~~~~~~~~~~  217 (222)
                      +        |.-  .+            .++..+-.+|.++++|..+++-.++.
T Consensus       141 VGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~  194 (1189)
T KOG2041|consen  141 VGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLE  194 (1189)
T ss_pred             EEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhh
Confidence            4        532  11            12223445788999988776654443

>KOG1354|consensus

Probab=98.38  E-value=3.7e-06  Score=67.35  Aligned_cols=137  Identities=18%  Similarity=0.365  Sum_probs=92.5

Q ss_pred             eEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeecc
Q psy16881         30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQ  109 (222)
Q Consensus        30 v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (222)
                      |.++.++.|++.++++ +|=.|.+|.++-.......               +                     ++     
T Consensus       167 iNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnI---------------V---------------------DI-----  204 (433)
T KOG1354|consen  167 INSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNI---------------V---------------------DI-----  204 (433)
T ss_pred             eeeeeecCccceEeec-cceeeeeccccccCCceeE---------------E---------------------Ec-----
Confidence            8889999999998885 6889999987621110000               0                     00     


Q ss_pred             CCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceE----EEeccCC------------ccEEEEEEcCCC
Q psy16881        110 DSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCI----KTLESHT------------RYVTCCTFSCDD  172 (222)
Q Consensus       110 ~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~----~~~~~~~------------~~V~~~~~s~~~  172 (222)
                      ....++.-+.-|++..|+|.. ++++=.+.-|+|++.|+++..+.    +.+....            ..|..+.|+..|
T Consensus       205 KP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG  284 (433)
T KOG1354|consen  205 KPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG  284 (433)
T ss_pred             cccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC
Confidence            011223345668888899875 45555666899999999854321    1111111            236789999999


Q ss_pred             CEEEEeeCCCeEEEEeCC---------------------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        173 SLLASGSNDKTVTIWDML---------------------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       173 ~~l~s~s~D~~i~lwd~~---------------------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      ++|++-. --++++||+.                                       ...+++|+.++..+++++.
T Consensus       285 ryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~  359 (433)
T KOG1354|consen  285 RYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA  359 (433)
T ss_pred             cEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence            9998653 2589999983                                       2479999999999999965

>KOG1064|consensus

Probab=98.38  E-value=6.8e-07  Score=84.18  Aligned_cols=147  Identities=16%  Similarity=0.230  Sum_probs=89.0

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY  107 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (222)
                      +.|+.+.|+.+|.-+..+..||.+.+|-.... .....  +-|. .....+..+.....  ....++....+..|+....
T Consensus      2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk-~~~s~--qchn-k~~~Df~Fi~s~~~--tag~s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK-PYTSW--QCHN-KALSDFRFIGSLLA--TAGRSSDNRNVCLWDTLLP 2325 (2439)
T ss_pred             chhhhhhhcccCCceeeeccCCceeecccCCc-ceecc--ccCC-ccccceeeeehhhh--ccccCCCCCcccchhcccC
Confidence            56777788888888888888999999976521 11100  0000 00011111110000  0000111112233332111


Q ss_pred             ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEE
Q psy16881        108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW  187 (222)
Q Consensus       108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lw  187 (222)
                      ....-+-..|.+.++++++-|..+.+++|+.+|.|++||+++.+....++.         ++ ...++++|+..|.|+||
T Consensus      2326 ~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw 2395 (2439)
T KOG1064|consen 2326 PMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIW 2395 (2439)
T ss_pred             cccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEE
Confidence            111011135888999999999999999999999999999998887766654         44 56788999999999999


Q ss_pred             eCC
Q psy16881        188 DML  190 (222)
Q Consensus       188 d~~  190 (222)
                      .+.
T Consensus      2396 ~~s 2398 (2439)
T KOG1064|consen 2396 RLS 2398 (2439)
T ss_pred             Ecc
Confidence            984

>KOG2695|consensus

Probab=98.37  E-value=6.7e-07  Score=71.48  Aligned_cols=100  Identities=20%  Similarity=0.344  Sum_probs=80.2

Q ss_pred             cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----ceEEEeccCCccEEEEEEcC-CCCEEEEeeCCCeEEEEeCC
Q psy16881        117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL-----TCIKTLESHTRYVTCCTFSC-DDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       117 h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~-----~~~~~~~~~~~~V~~~~~s~-~~~~l~s~s~D~~i~lwd~~  190 (222)
                      .++.|.+++|...++.++.|..+|.|-.+|++.+     .+...+ -|.+.|+++..-. +++.|++.+-+|+|++||++
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R  329 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR  329 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence            4577888999888999999999999999999754     233333 4777888888765 78889999999999999985


Q ss_pred             ----------------------------CCeEEEeeCCCcEEEEeCC-CCccccCC
Q psy16881        191 ----------------------------ATLLASGSNDKTVTIWDMR-GNLSVDVP  217 (222)
Q Consensus       191 ----------------------------~~~l~s~~~d~~i~iwd~~-~~~~~~~~  217 (222)
                                                  ...+++++.|-..|||.++ +.+.-.+|
T Consensus       330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence                                        2358889999999999998 65655554

>KOG4497|consensus

Probab=98.36  E-value=6.1e-05  Score=60.28  Aligned_cols=102  Identities=20%  Similarity=0.337  Sum_probs=70.0

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe------------------------------------ccC---
Q psy16881        119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL------------------------------------ESH---  159 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~------------------------------------~~~---  159 (222)
                      -.+..++|+|.+++++.|+.|+++||.+--+-+...++                                    .+|   
T Consensus       211 lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~  290 (447)
T KOG4497|consen  211 LGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWE  290 (447)
T ss_pred             cceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccc
Confidence            56888999999999999999999998653221111000                                    000   


Q ss_pred             ---------------------------CccEEEEEEcCCCCEEEEeeCC--CeEEEEeCC--------------------
Q psy16881        160 ---------------------------TRYVTCCTFSCDDSLLASGSND--KTVTIWDML--------------------  190 (222)
Q Consensus       160 ---------------------------~~~V~~~~~s~~~~~l~s~s~D--~~i~lwd~~--------------------  190 (222)
                                                 ...+.-++|++|..+++|-...  ..+=+||+.                    
T Consensus       291 ~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~Wd  370 (447)
T KOG4497|consen  291 ESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWD  370 (447)
T ss_pred             cchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeC
Confidence                                       0114568999999999987654  367788974                    


Q ss_pred             --CCeEEEeeCCCcEEEEeCCCCccccCCCCc
Q psy16881        191 --ATLLASGSNDKTVTIWDMRGNLSVDVPLNY  220 (222)
Q Consensus       191 --~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  220 (222)
                        .+.|+.+.....+++|.+++.....+|..+
T Consensus       371 P~~prL~vctg~srLY~W~psg~~~V~vP~~G  402 (447)
T KOG4497|consen  371 PGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKG  402 (447)
T ss_pred             CCCceEEEEcCCceEEEEcCCCceEEecCCCC
Confidence              234555555666999999987777777654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.32  E-value=5.3e-05  Score=64.74  Aligned_cols=151  Identities=17%  Similarity=0.106  Sum_probs=79.0

Q ss_pred             ceEEEEEcCCCCeEE-EecCCC--eEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee---eeEee
Q psy16881         29 NMRCVRFSPDTRLLA-TGGDDE--TVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK---QIIPT  102 (222)
Q Consensus        29 ~v~~l~~spdg~~l~-tgs~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  102 (222)
                      .....+|+|||+.|+ +.+.+|  .|++|++.++............    ..   ..+.++.....+.....   .+...
T Consensus       249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~----~~---~~~spDG~~l~f~sd~~g~~~iy~~  321 (433)
T PRK04922        249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGID----TE---PTWAPDGKSIYFTSDRGGRPQIYRV  321 (433)
T ss_pred             CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCc----cc---eEECCCCCEEEEEECCCCCceEEEE
Confidence            345679999999765 445555  5889998876543322111000    00   11122222222222111   11111


Q ss_pred             eeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEee
Q psy16881        103 RVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDK---TVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS  179 (222)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg---~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s  179 (222)
                      +  ........+..+.......+|+|+|+.++..+.++   .|.+||+.+++.. .+.. ........|+|+|+.|+..+
T Consensus       322 d--l~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~~~~~p~~spdG~~i~~~s  397 (433)
T PRK04922        322 A--ASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-GSLDESPSFAPNGSMVLYAT  397 (433)
T ss_pred             E--CCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC-CCCCCCceECCCCCEEEEEE
Confidence            1  10111111111122334678999999877665433   5899999877654 3332 22345678999999888766


Q ss_pred             CC---CeEEEEeCC
Q psy16881        180 ND---KTVTIWDML  190 (222)
Q Consensus       180 ~D---~~i~lwd~~  190 (222)
                      .+   +.+.++++.
T Consensus       398 ~~~g~~~L~~~~~~  411 (433)
T PRK04922        398 REGGRGVLAAVSTD  411 (433)
T ss_pred             ecCCceEEEEEECC
Confidence            54   356666664

>KOG3914|consensus

Probab=98.31  E-value=3.9e-06  Score=68.16  Aligned_cols=96  Identities=20%  Similarity=0.281  Sum_probs=70.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC----------
Q psy16881        121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML----------  190 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~----------  190 (222)
                      |..+..+.....+-.++....+.+|....+. ...+.+|-+.+..++++||++.|+++-.|..|++-...          
T Consensus       113 i~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl  191 (390)
T KOG3914|consen  113 ISFIREDTSVLVADKAGDVYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL  191 (390)
T ss_pred             eeeeeccceEEEEeecCCceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc
Confidence            4444444444445555666677777766543 34456899999999999999999999999999997642          


Q ss_pred             -------------CCeEEEeeCCCcEEEEeCC-CCccccCC
Q psy16881        191 -------------ATLLASGSNDKTVTIWDMR-GNLSVDVP  217 (222)
Q Consensus       191 -------------~~~l~s~~~d~~i~iwd~~-~~~~~~~~  217 (222)
                                   +..|+|+|-|+++++||++ ++....++
T Consensus       192 GH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  192 GHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             ccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence                         3458999999999999998 54444433

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.29  E-value=5e-05  Score=63.43  Aligned_cols=67  Identities=18%  Similarity=0.210  Sum_probs=53.9

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEee-CCCeEEEEeCC
Q psy16881        123 SVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS-NDKTVTIWDML  190 (222)
Q Consensus       123 ~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s-~D~~i~lwd~~  190 (222)
                      .+.++++|++++.++.||.|.++|+.+.+.+.++..... ...+++|++|++++++. ..+.+.++|..
T Consensus        41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~  108 (369)
T PF02239_consen   41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAE  108 (369)
T ss_dssp             EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred             EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccc
Confidence            366899999999999999999999999999998877554 57899999999999765 67899999974

...

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.28  E-value=5.6e-06  Score=70.58  Aligned_cols=72  Identities=21%  Similarity=0.234  Sum_probs=60.6

Q ss_pred             cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       117 h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      .++.|.+.+++|+...++.|+.||+|.+||.+.+..  ......-.++.++|+|+|..+++|+..|.+.+||+.
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            567889999999999999999999999999876532  222333456789999999999999999999999973

>KOG1334|consensus

Probab=98.21  E-value=2.5e-05  Score=65.16  Aligned_cols=92  Identities=25%  Similarity=0.393  Sum_probs=70.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEeC--CCC----------ceEEE-eccCCc--cEEEEEE-cCCCCEEEEeeCC
Q psy16881        118 TSAVTSVRFNHKSSLLVSGSVDKTVKLWDV--PSL----------TCIKT-LESHTR--YVTCCTF-SCDDSLLASGSND  181 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~--~~~----------~~~~~-~~~~~~--~V~~~~~-s~~~~~l~s~s~D  181 (222)
                      ...|+++.|++++.-+.+...|-.|.++.-  ..+          ..+.. +++|..  .|..+-| -|...++++||.=
T Consensus       336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC  415 (559)
T KOG1334|consen  336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC  415 (559)
T ss_pred             cccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCcc
Confidence            456999999988877777777888888832  223          22333 567654  4667766 4788999999999


Q ss_pred             CeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        182 KTVTIWDML-----------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       182 ~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      |.|.+|+-.                       -++||++|-|.-|+||...
T Consensus       416 GhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~  466 (559)
T KOG1334|consen  416 GHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL  466 (559)
T ss_pred             ceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence            999999963                       3689999999999999874

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.20  E-value=0.00013  Score=62.30  Aligned_cols=144  Identities=12%  Similarity=0.058  Sum_probs=74.0

Q ss_pred             ccceEEEEEcCCCCeEE-EecCCCe--EEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee---eeE
Q psy16881         27 GSNMRCVRFSPDTRLLA-TGGDDET--VTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK---QII  100 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~-tgs~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  100 (222)
                      .+.+...+|+|||+.|+ +.+.+|.  |.+|++.++....-....+..    ..   ..++++....++.....   .+.
T Consensus       245 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~----~~---~~~spDG~~i~f~s~~~g~~~Iy  317 (435)
T PRK05137        245 PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAID----TS---PSYSPDGSQIVFESDRSGSPQLY  317 (435)
T ss_pred             CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCcc----Cc---eeEcCCCCEEEEEECCCCCCeEE
Confidence            34566789999999765 5555665  666677765443221111000    00   11122222222222111   111


Q ss_pred             eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881        101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVD---KTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s  177 (222)
                      ..+  ..+.....+..+...+....|+|+|+.++..+.+   ..|.+||+..+.. ..+.. ...+....|+|+|+.|+.
T Consensus       318 ~~d--~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~  393 (435)
T PRK05137        318 VMN--ADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMF  393 (435)
T ss_pred             EEE--CCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEE
Confidence            111  1111111122223445667899999988776543   3577888765432 33322 224667899999999887


Q ss_pred             eeCC
Q psy16881        178 GSND  181 (222)
Q Consensus       178 ~s~D  181 (222)
                      .+.+
T Consensus       394 ~~~~  397 (435)
T PRK05137        394 FRQT  397 (435)
T ss_pred             EEcc
Confidence            6543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.18  E-value=0.00012  Score=62.55  Aligned_cols=59  Identities=15%  Similarity=0.098  Sum_probs=42.8

Q ss_pred             EEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCC
Q psy16881        122 TSVRFNHKSSLLVSGSVDK---TVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDK  182 (222)
Q Consensus       122 ~~l~~~~~~~~l~sg~~dg---~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~  182 (222)
                      ...+|+|+|++++..+.++   .|.+||+.+++.. .+..+ .......|+|+|+.|+.++.++
T Consensus       331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecC
Confidence            3578999999888776554   5999999877643 33322 2346789999999999877654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.16  E-value=2e-05  Score=62.62  Aligned_cols=102  Identities=23%  Similarity=0.409  Sum_probs=71.5

Q ss_pred             cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--Cc-eEEEeccCCc-----cEEEEEEcCCC-CEEEEeeCCCeEE
Q psy16881        115 GRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS--LT-CIKTLESHTR-----YVTCCTFSCDD-SLLASGSNDKTVT  185 (222)
Q Consensus       115 ~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~--~~-~~~~~~~~~~-----~V~~~~~s~~~-~~l~s~s~D~~i~  185 (222)
                      ..|+..|++++++.+...++++. |-.|-+|++.-  +. .+..++.|..     -|++..|+|.. ..++-.+..|.|+
T Consensus       169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             ccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            35889999999999888888765 67888998752  21 2344555543     37888999865 3445566788999


Q ss_pred             EEeCC---------------------------------------CCeEEEeeCCCcEEEEeCC--CCccccCCC
Q psy16881        186 IWDML---------------------------------------ATLLASGSNDKTVTIWDMR--GNLSVDVPL  218 (222)
Q Consensus       186 lwd~~---------------------------------------~~~l~s~~~d~~i~iwd~~--~~~~~~~~~  218 (222)
                      +-|++                                       +.++++-+ --+++|||.+  .++...+|+
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~  320 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPM  320 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeech
Confidence            99985                                       23444433 3489999987  557776664

>KOG0882|consensus

Probab=98.14  E-value=8e-06  Score=67.56  Aligned_cols=173  Identities=17%  Similarity=0.118  Sum_probs=102.5

Q ss_pred             cccceEEEeeeeeeccceEEEEEcCCCCeEEEecC-CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccce
Q psy16881         13 FNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGD-DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRV   91 (222)
Q Consensus        13 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~tgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (222)
                      .+|.+.....+.|+ +.|..++.+.+|.++.|.+. |..+++||+++...+.-.. ....++.+.... .+  .+.....
T Consensus        40 isGvEfVKhFraHL-~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiK-L~~lPg~a~wv~-sk--Gd~~s~I  114 (558)
T KOG0882|consen   40 ISGVEFVKHFRAHL-GVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIK-LVDLPGFAEWVT-SK--GDKISLI  114 (558)
T ss_pred             ccceeehhhhHHHH-HHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcc-cccCCCceEEec-CC--CCeeeeE
Confidence            34555544444444 66888899999999999888 9999999998654332110 011111111000 00  0000000


Q ss_pred             e-ee-eeeeeEeeeeeeeccCC-ccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-Cce-----EE--------
Q psy16881         92 F-ST-FVKQIIPTRVGVYGQDS-ETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS-LTC-----IK--------  154 (222)
Q Consensus        92 ~-~~-~~~~~~~~~~~~~~~~~-~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~-~~~-----~~--------  154 (222)
                      . +. ....+..-+-.....+. ...+-|..+|..+.+.+.+..+++....|+|..|..+. .+.     ..        
T Consensus       115 AVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL  194 (558)
T KOG0882|consen  115 AVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL  194 (558)
T ss_pred             EeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchh
Confidence            0 00 00011111101111111 11234899999999999999999999999999998762 111     11        


Q ss_pred             -EeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        155 -TLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       155 -~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                       .+........++.|+|++..+.+-+.|.+|++++++
T Consensus       195 y~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K  231 (558)
T KOG0882|consen  195 YGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK  231 (558)
T ss_pred             hcccccccCccceEEccccCcccccCcccEEEEEEec
Confidence             112233456899999999999999999999999985

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.13  E-value=1.8e-05  Score=67.58  Aligned_cols=73  Identities=16%  Similarity=0.331  Sum_probs=58.0

Q ss_pred             eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      .+.+.|.|.+++|+.+.|+.|+.||+|.+||...+.....                                        
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~----------------------------------------  296 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA----------------------------------------  296 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee----------------------------------------
Confidence            3567899999999999999999999999999754311100                                        


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP  148 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~  148 (222)
                                 ...-..+.++|||+|.+++.|+..|.+.+||+-
T Consensus       297 -----------ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  297 -----------KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             -----------eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence                       012234679999999999999999999999974

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.12  E-value=0.00057  Score=57.36  Aligned_cols=74  Identities=11%  Similarity=0.108  Sum_probs=61.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCC----eEEEEeCCC
Q psy16881        118 TSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDK----TVTIWDMLA  191 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~----~i~lwd~~~  191 (222)
                      -+.|..+..+++|++++.+.....|-+.|+.++.....=+.....|+...|||+++.||-+-.+|    .|+++|+.+
T Consensus       401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            45688899999999999998888888889998876444344566799999999999999887775    789999865

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.10  E-value=0.00052  Score=64.76  Aligned_cols=91  Identities=11%  Similarity=0.165  Sum_probs=64.1

Q ss_pred             EEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEecc-------------C--------CccEEEEEEcCCCCEEEEe
Q psy16881        121 VTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTLES-------------H--------TRYVTCCTFSCDDSLLASG  178 (222)
Q Consensus       121 i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~-------------~--------~~~V~~~~~s~~~~~l~s~  178 (222)
                      ...++++++++ ++++-+.++.|++||+.++.......+             +        -.....++++++|+++++-
T Consensus       742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVAD  821 (1057)
T PLN02919        742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVAD  821 (1057)
T ss_pred             ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEE
Confidence            46689999988 455556678999999986543211000             0        0123578899999998888


Q ss_pred             eCCCeEEEEeCC------------------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        179 SNDKTVTIWDML------------------------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       179 s~D~~i~lwd~~------------------------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      +.++.|++||..                                    +.++++-+.++.|++||+++.
T Consensus       822 s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        822 SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             CCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            899999999973                                    124555566889999999743

>KOG4190|consensus

Probab=98.09  E-value=3.8e-06  Score=71.20  Aligned_cols=96  Identities=28%  Similarity=0.490  Sum_probs=75.9

Q ss_pred             cccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-------CceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        113 TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS-------LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       113 ~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~-------~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                      .+.+|+.+|..++--.+.+-+++++.|++||+|.++.       ..|..+.+.|+.+|..+.|-.+-++++  +.|+-|.
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giH  807 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIH  807 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccCcce
Confidence            4567888888876656677899999999999999863       346778899999999999988877776  5688999


Q ss_pred             EEeCC---------------------------CCeEEEe-eCCCcEEEEeCCC
Q psy16881        186 IWDML---------------------------ATLLASG-SNDKTVTIWDMRG  210 (222)
Q Consensus       186 lwd~~---------------------------~~~l~s~-~~d~~i~iwd~~~  210 (222)
                      +||..                           ...++++ +...+++++|.|.
T Consensus       808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs  860 (1034)
T KOG4190|consen  808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS  860 (1034)
T ss_pred             eecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccc
Confidence            99952                           1234444 7888999999884

>KOG0309|consensus

Probab=98.03  E-value=3.7e-05  Score=67.38  Aligned_cols=97  Identities=27%  Similarity=0.458  Sum_probs=76.0

Q ss_pred             cccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC-ceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        113 TVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSL-TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       113 ~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      ++.+|...|+.+.|++... ++++++.|-.+-.||+++- ..+..+..-...-..+.|+.....+.+.+..+.|.+||++
T Consensus       109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r  188 (1081)
T KOG0309|consen  109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR  188 (1081)
T ss_pred             EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence            4567999999999998874 8999999999999999874 3355544333345678898876666667777889999985


Q ss_pred             -------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        191 -------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       191 -------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                                               -..+.+++.|++++.||-.
T Consensus       189 ~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~  232 (1081)
T KOG0309|consen  189 KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS  232 (1081)
T ss_pred             CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence                                     1358889999999999975

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.02  E-value=0.00043  Score=59.08  Aligned_cols=72  Identities=8%  Similarity=0.131  Sum_probs=49.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeC---CCeEEEEeCC
Q psy16881        118 TSAVTSVRFNHKSSLLVSGSVD---KTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN---DKTVTIWDML  190 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~---D~~i~lwd~~  190 (222)
                      ...+....|+|+|+.++..+.+   ..|.+||+.+++... +......+....|+|+|+.|+..+.   ...|.++|+.
T Consensus       326 ~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~  403 (428)
T PRK01029        326 YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI  403 (428)
T ss_pred             CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence            3456678999999977765443   368899998776543 3333345677899999998875443   2456667764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.01  E-value=0.0013  Score=56.13  Aligned_cols=70  Identities=19%  Similarity=0.244  Sum_probs=46.5

Q ss_pred             EEEEEEcCCCCEEEEEe-CCCcEEEE--eCCC-CceEEEeccCCccEEEEEEcCCCCEEEEeeCC---CeEEEEeCC
Q psy16881        121 VTSVRFNHKSSLLVSGS-VDKTVKLW--DVPS-LTCIKTLESHTRYVTCCTFSCDDSLLASGSND---KTVTIWDML  190 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg~-~dg~I~iw--d~~~-~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D---~~i~lwd~~  190 (222)
                      .....|+|+|+.|+..+ .+|...||  ++.. +.....+..+...+....|||+|+.|+..+.+   ..|.+||+.
T Consensus       283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~  359 (428)
T PRK01029        283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLA  359 (428)
T ss_pred             cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            35678999999766554 46765666  4432 23334444444566788999999998876543   468888873

>KOG4640|consensus

Probab=97.99  E-value=5.8e-05  Score=64.97  Aligned_cols=90  Identities=22%  Similarity=0.274  Sum_probs=75.3

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEE-EEEEcCCCCEEEEeeCCCeEEEEeCCCCe---
Q psy16881        118 TSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVT-CCTFSCDDSLLASGSNDKTVTIWDMLATL---  193 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~-~~~~s~~~~~l~s~s~D~~i~lwd~~~~~---  193 (222)
                      ...|.-+.|+|.-..+|.+..+|.|-+..++ .+.+.++.-|...++ +++|.|||+.||.|-.||+|++.|+.+..   
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            4457778999999999999999999999988 677778876667777 99999999999999999999999986543   


Q ss_pred             --EEEeeCCCcEEEEeC
Q psy16881        194 --LASGSNDKTVTIWDM  208 (222)
Q Consensus       194 --l~s~~~d~~i~iwd~  208 (222)
                        +++-..|-+-..|+.
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence              344567888889973

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.97  E-value=0.00043  Score=65.30  Aligned_cols=70  Identities=11%  Similarity=0.141  Sum_probs=54.7

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec-------------cCCccEEEEEEcCCCCEEEEeeCCCeEEEEe
Q psy16881        122 TSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE-------------SHTRYVTCCTFSCDDSLLASGSNDKTVTIWD  188 (222)
Q Consensus       122 ~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~-------------~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd  188 (222)
                      ..++++++|+.+++-+.++.|++||..++.......             +.-.....++++++|+++++-+.+..|++||
T Consensus       807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence            468889999988888889999999998765542211             1112467899999999998988999999999


Q ss_pred             CCC
Q psy16881        189 MLA  191 (222)
Q Consensus       189 ~~~  191 (222)
                      +.+
T Consensus       887 ~~~  889 (1057)
T PLN02919        887 LNK  889 (1057)
T ss_pred             CCC
Confidence            854

>KOG4532|consensus

Probab=97.96  E-value=0.0011  Score=51.96  Aligned_cols=114  Identities=21%  Similarity=0.214  Sum_probs=75.7

Q ss_pred             eEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeecc
Q psy16881         30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQ  109 (222)
Q Consensus        30 v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (222)
                      +..+.++||++++++.++...|.+|.+++.....+.                                 +          
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~---------------------------------~----------  197 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN---------------------------------I----------  197 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeee---------------------------------e----------
Confidence            677889999999998888888888877642211000                                 0          


Q ss_pred             CCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-E----EEeccCCccEEEEEEcCCCC---EEEEeeCC
Q psy16881        110 DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC-I----KTLESHTRYVTCCTFSCDDS---LLASGSND  181 (222)
Q Consensus       110 ~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~-~----~~~~~~~~~V~~~~~s~~~~---~l~s~s~D  181 (222)
                         ..+...+.-.+.+|+.....+|++..||++.|||++.... .    .+...|...++.+.|++.|.   ++++-. -
T Consensus       198 ---~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh-f  273 (344)
T KOG4532|consen  198 ---YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH-F  273 (344)
T ss_pred             ---EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecC-c
Confidence               0001122235677888888999999999999999986432 2    22345788899999998653   233322 2


Q ss_pred             CeEEEEeCC
Q psy16881        182 KTVTIWDML  190 (222)
Q Consensus       182 ~~i~lwd~~  190 (222)
                      +.+.+-|++
T Consensus       274 s~~hv~D~R  282 (344)
T KOG4532|consen  274 SRVHVVDTR  282 (344)
T ss_pred             ceEEEEEcc
Confidence            456777764

>KOG1645|consensus

Probab=97.95  E-value=5.5e-05  Score=61.86  Aligned_cols=75  Identities=16%  Similarity=0.219  Sum_probs=58.8

Q ss_pred             eeccceEEEEEcCCCC-eEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         25 HIGSNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        25 ~~~~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      .++..|+.++|||..+ ++..++-+++|+|.|+++...+...                                      
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy--------------------------------------  232 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY--------------------------------------  232 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe--------------------------------------
Confidence            3478899999999888 7888999999999998864433221                                      


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCC
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPS  149 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~  149 (222)
                                 ..| ..+++++|+-+. ++++.|..+|.|.|||+++
T Consensus       233 -----------~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  233 -----------IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             -----------ecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence                       012 457888898765 5899999999999999975

>smart00320 WD40 WD40 repeats

Probab=97.95  E-value=4.3e-05  Score=40.39  Aligned_cols=38  Identities=47%  Similarity=0.693  Sum_probs=33.2

Q ss_pred             ceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEe
Q psy16881        151 TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD  188 (222)
Q Consensus       151 ~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd  188 (222)
                      +++..+..|...|.++.|++.+..+++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45566677888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.88  E-value=0.0012  Score=54.77  Aligned_cols=124  Identities=21%  Similarity=0.311  Sum_probs=76.7

Q ss_pred             eccceEEEEEcCCCCeEE-EecCCCeEEEEeCC--CCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee
Q psy16881         26 IGSNMRCVRFSPDTRLLA-TGGDDETVTVWRSD--DLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT  102 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~-tgs~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (222)
                      .++..+.++|+|+++++. +...+++|.+|++.  ++.... .          ..   +                     
T Consensus       190 ~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~-~----------~~---~---------------------  234 (345)
T PF10282_consen  190 PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE-I----------QT---I---------------------  234 (345)
T ss_dssp             TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE-E----------EE---E---------------------
T ss_pred             cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE-E----------EE---e---------------------
Confidence            356678899999999764 55668999999876  221100 0          00   0                     


Q ss_pred             eeeeeccCCccccccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCC--CCc--eEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881        103 RVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS-VDKTVKLWDVP--SLT--CIKTLESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~-~dg~I~iwd~~--~~~--~~~~~~~~~~~V~~~~~s~~~~~l~s  177 (222)
                        .....   .+. .......|.++|+|++|+... ..+.|.++++.  +++  .+..+...-...+.+.++|+|++|++
T Consensus       235 --~~~~~---~~~-~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~V  308 (345)
T PF10282_consen  235 --STLPE---GFT-GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYV  308 (345)
T ss_dssp             --ESCET---TSC-SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEE
T ss_pred             --eeccc---ccc-ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEE
Confidence              00000   000 112456789999999766654 57789999983  233  23444433445789999999999998


Q ss_pred             ee-CCCeEEEEeCC
Q psy16881        178 GS-NDKTVTIWDML  190 (222)
Q Consensus       178 ~s-~D~~i~lwd~~  190 (222)
                      +. .++.|.+|++.
T Consensus       309 a~~~s~~v~vf~~d  322 (345)
T PF10282_consen  309 ANQDSNTVSVFDID  322 (345)
T ss_dssp             EETTTTEEEEEEEE
T ss_pred             EecCCCeEEEEEEe
Confidence            76 55689998763

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4532|consensus

Probab=97.88  E-value=0.0026  Score=49.81  Aligned_cols=70  Identities=19%  Similarity=0.137  Sum_probs=55.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceE-E-EeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPS-LTCI-K-TLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~-~~~~-~-~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      ...+.++++++.+++.+....|-.|.+.. ++.+ . .....++--.+.+|+.....+|+++.||++.+||++
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR  233 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVR  233 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEec
Confidence            77899999999999999999999998754 3333 3 223334445688999999999999999999999985

>KOG1645|consensus

Probab=97.87  E-value=6.5e-05  Score=61.49  Aligned_cols=76  Identities=17%  Similarity=0.326  Sum_probs=66.4

Q ss_pred             ccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCC-CEEEEeeCCCeEEEEeCC
Q psy16881        114 VGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD-SLLASGSNDKTVTIWDML  190 (222)
Q Consensus       114 ~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~-~~l~s~s~D~~i~lwd~~  190 (222)
                      +..|...|..++|+|..+ .+..++.+++|+|.|+++..++..+..+ ..+++++|+.+. ++|+.|-..|.|.+||++
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            345778899999999887 7899999999999999999888888887 679999999765 678888899999999985

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.87  E-value=0.0012  Score=55.86  Aligned_cols=63  Identities=8%  Similarity=0.078  Sum_probs=43.6

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCC
Q psy16881        118 TSAVTSVRFNHKSSLLVSGSVDK---TVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDK  182 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~sg~~dg---~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~  182 (222)
                      ...+....|+|++++++.++.++   .|.+||+.++.. ..+... .......|+|+++.|+..+.++
T Consensus       321 ~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       321 GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence            34456788999999888887766   788899887543 223222 2234567999999888777654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2066|consensus

Probab=97.84  E-value=0.00061  Score=60.36  Aligned_cols=69  Identities=17%  Similarity=0.217  Sum_probs=49.0

Q ss_pred             CCCEEEEEEcCC-----CCEEEEEeCCCcEEEEeCCC--CceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        118 TSAVTSVRFNHK-----SSLLVSGSVDKTVKLWDVPS--LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       118 ~~~i~~l~~~~~-----~~~l~sg~~dg~I~iwd~~~--~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      +-++.+++++|+     .+.+++|+.-| +-++.-+=  .+.-........+|.++.|.  |++||=++.+| |++||..
T Consensus       112 ~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~  187 (846)
T KOG2066|consen  112 KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTP  187 (846)
T ss_pred             CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEecc
Confidence            456778888887     46899999888 66665321  11111344556789999996  88999998887 7999973

>KOG4714|consensus

Probab=97.77  E-value=0.0002  Score=55.64  Aligned_cols=128  Identities=19%  Similarity=0.341  Sum_probs=80.3

Q ss_pred             ceEEEEEcCCC-CeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881         29 NMRCVRFSPDT-RLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY  107 (222)
Q Consensus        29 ~v~~l~~spdg-~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (222)
                      .|.+++-.|.. +++++|+.||.+.+||.......                    .                        
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p--------------------~------------------------  216 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP--------------------V------------------------  216 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccch--------------------H------------------------
Confidence            38888888854 46789999999999997632100                    0                        


Q ss_pred             ccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEE--EEEcCCCCEEE-E---eeC
Q psy16881        108 GQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTC--CTFSCDDSLLA-S---GSN  180 (222)
Q Consensus       108 ~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~--~~~s~~~~~l~-s---~s~  180 (222)
                          ..+..|+.+|..+-|+|.. ..|+++++||.+--||..+ +.+. +. ....+.+  ++=+|-..+|= +   -+.
T Consensus       217 ----S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~l~-i~-~~~s~~s~WLsgD~v~s~i~i~~ll~~~  289 (319)
T KOG4714|consen  217 ----SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TFLS-IS-NQASVISSWLSGDPVKSRIEITSLLPSR  289 (319)
T ss_pred             ----HHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ceEE-ec-CccccccccccCCcccceEeeecccccc
Confidence                1234588999999999876 5899999999999999874 2222 11 1111111  11111111110 0   122


Q ss_pred             CCeEEEEeCCCCeEEEeeCCCcEEEEe
Q psy16881        181 DKTVTIWDMLATLLASGSNDKTVTIWD  207 (222)
Q Consensus       181 D~~i~lwd~~~~~l~s~~~d~~i~iwd  207 (222)
                      ...|.-+|+.++-|++|+.-+.|++++
T Consensus       290 ~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  290 SLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             ceeeeeeeccCceEEeccccceEEEec
Confidence            345677888888888888778888764

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.77  E-value=0.016  Score=47.98  Aligned_cols=72  Identities=18%  Similarity=0.173  Sum_probs=55.9

Q ss_pred             CEEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCC-EEEEee-CCCeEEEE
Q psy16881        120 AVTSVRFNHKSSLLVSGS----------VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS-LLASGS-NDKTVTIW  187 (222)
Q Consensus       120 ~i~~l~~~~~~~~l~sg~----------~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~-~l~s~s-~D~~i~lw  187 (222)
                      .+.-++++++++.++...          ..+.|.++|..+++.+..+... ..+..++++++++ +|++.. .++.|.++
T Consensus       249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsVi  327 (352)
T TIGR02658       249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIF  327 (352)
T ss_pred             cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEE
Confidence            344489999998777732          2257999999999998887653 4688999999999 888766 57889999


Q ss_pred             eCCCC
Q psy16881        188 DMLAT  192 (222)
Q Consensus       188 d~~~~  192 (222)
                      |..+.
T Consensus       328 D~~t~  332 (352)
T TIGR02658       328 DAETG  332 (352)
T ss_pred             ECcCC
Confidence            98543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.76  E-value=0.0043  Score=51.39  Aligned_cols=108  Identities=11%  Similarity=0.047  Sum_probs=70.5

Q ss_pred             CCCCCcccceEEEeeeeeeccceEEEEEcCCCCeEEEecC----------CCeEEEEeCCCCceEEeeccCCCcceeecc
Q psy16881          8 DGPSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGD----------DETVTVWRSDDLSLIMETNDRGHTQGRIEG   77 (222)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~tgs~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~   77 (222)
                      |.-.++++...++.+....+..-+-+ +||||+.|.++..          +..|.+||..+.+...+..-. ..+     
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p-~~p-----   99 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP-EGP-----   99 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC-CCc-----
Confidence            44557777666665443333344445 9999998776655          889999999887766554200 000     


Q ss_pred             ceecCccCCcccceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEe-C-CCcEEEEeCCCCceEEE
Q psy16881         78 WGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS-V-DKTVKLWDVPSLTCIKT  155 (222)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~-~-dg~I~iwd~~~~~~~~~  155 (222)
                                                        +..  ....-..++++++|++++... . ++.|.+.|+.+++.+.+
T Consensus       100 ----------------------------------~~~--~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~e  143 (352)
T TIGR02658       100 ----------------------------------RFL--VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRM  143 (352)
T ss_pred             ----------------------------------hhh--ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEE
Confidence                                              000  011224578899999888766 3 68999999999998887


Q ss_pred             ecc
Q psy16881        156 LES  158 (222)
Q Consensus       156 ~~~  158 (222)
                      +..
T Consensus       144 i~v  146 (352)
T TIGR02658       144 MDV  146 (352)
T ss_pred             EeC
Confidence            754

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0309|consensus

Probab=97.73  E-value=0.00017  Score=63.30  Aligned_cols=124  Identities=27%  Similarity=0.408  Sum_probs=84.3

Q ss_pred             cceEEEeeeeeeccceEEEEEcCCCC-eEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceee
Q psy16881         15 GTELILRGSVHIGSNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFS   93 (222)
Q Consensus        15 ~~~~~~~~~~~~~~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (222)
                      ..++.+.+|   +..|..+-|.|+.. +|++++-|..+..||+.......-.                            
T Consensus       105 aIef~lhgh---sraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys----------------------------  153 (1081)
T KOG0309|consen  105 AIEFVLHGH---SRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS----------------------------  153 (1081)
T ss_pred             ceEEEEecC---ccceeccccCCCCCcceeeccccccceeeeccCCCcceee----------------------------
Confidence            456666666   77788889988754 7889999999999988643211100                            


Q ss_pred             eeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceEEEeccCCccEEEEEEcC-C
Q psy16881         94 TFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL-TCIKTLESHTRYVTCCTFSC-D  171 (222)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~V~~~~~s~-~  171 (222)
                      .     ..|              | .....++|+.....+...+..+.|.+||++.+ ..+..+++|...|..+.|.. .
T Consensus       154 ~-----~~w--------------~-s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~  213 (1081)
T KOG0309|consen  154 T-----SSW--------------R-SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFK  213 (1081)
T ss_pred             e-----ecc--------------c-ccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhh
Confidence            0     000              1 12245677765544444455678999999865 45677888888888888864 3


Q ss_pred             CCEEEEeeCCCeEEEEeC
Q psy16881        172 DSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       172 ~~~l~s~s~D~~i~lwd~  189 (222)
                      -..+.+.+.|++++.||-
T Consensus       214 ~s~~~s~~~d~tvkfw~y  231 (1081)
T KOG0309|consen  214 YSEIMSSSNDGTVKFWDY  231 (1081)
T ss_pred             hhhhcccCCCCceeeecc
Confidence            346778889999999984

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.72  E-value=0.011  Score=50.06  Aligned_cols=74  Identities=15%  Similarity=0.149  Sum_probs=61.6

Q ss_pred             ccCCCEEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        116 RHTSAVTSVRFNHKSSLLVSGSVDK-TVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       116 ~h~~~i~~l~~~~~~~~l~sg~~dg-~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      +|...|....+..+++-++.|..|| .+-|+|..+++ ++.+...-..|.++..+++|+.++.+-....+-+.|+.
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence            4677799988888888899999999 89999988664 55666777889999999999999988877777777774

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.72  E-value=0.0038  Score=53.25  Aligned_cols=66  Identities=12%  Similarity=0.081  Sum_probs=41.5

Q ss_pred             EEEEcCCCCEEEEEeCC-C--cEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCC-C--eEEEEeCC
Q psy16881        123 SVRFNHKSSLLVSGSVD-K--TVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSND-K--TVTIWDML  190 (222)
Q Consensus       123 ~l~~~~~~~~l~sg~~d-g--~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D-~--~i~lwd~~  190 (222)
                      ...|+|+|+.++..+.+ +  .|.+||+.+++.. .+.. ........|+|+|+.|+..+.+ +  .+.+.++.
T Consensus       335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             ceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            46799999987766543 3  4778898876542 2222 1122346899999998876644 2  34455553

>KOG4190|consensus

Probab=97.71  E-value=0.00021  Score=60.99  Aligned_cols=163  Identities=17%  Similarity=0.196  Sum_probs=91.3

Q ss_pred             EeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCC-------ceEEeeccCCCcceeeccceecCccCCccccee
Q psy16881         20 LRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDL-------SLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF   92 (222)
Q Consensus        20 ~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (222)
                      +.....|.+.|+.++.-.+.+-+++++.|++|++|.++..       .+..++  ..|+.. +...+.+     ...+..
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY--~aHkk~-i~~igfL-----~~lr~i  799 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY--QAHKKP-IHDIGFL-----ADLRSI  799 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh--hhccCc-ccceeee-----ecccee
Confidence            3333445888998866556666789999999999987631       122222  222211 1111111     011111


Q ss_pred             eeeeeeeEeeee--eeecc-CCc-cccccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceEEEec-----cCCcc
Q psy16881         93 STFVKQIIPTRV--GVYGQ-DSE-TVGRHTSAVTSVRFNHKSSLLVSG-SVDKTVKLWDVPSLTCIKTLE-----SHTRY  162 (222)
Q Consensus        93 ~~~~~~~~~~~~--~~~~~-~~~-~~~~h~~~i~~l~~~~~~~~l~sg-~~dg~I~iwd~~~~~~~~~~~-----~~~~~  162 (222)
                      ......+..|+.  +.... -.. ..++..+.|.++. +-+...++.| +...+||++|.+..+.+.+++     +.+..
T Consensus       800 ~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~  878 (1034)
T KOG4190|consen  800 ASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL  878 (1034)
T ss_pred             eeccCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence            222333434431  10000 000 0111223344442 1122334444 788999999999877665553     44567


Q ss_pred             EEEEEEcCCCCEEEEeeCCCeEEEEeCCC
Q psy16881        163 VTCCTFSCDDSLLASGSNDKTVTIWDMLA  191 (222)
Q Consensus       163 V~~~~~s~~~~~l~s~s~D~~i~lwd~~~  191 (222)
                      +++++.-+.|+.++.+-..|.|.+.|.++
T Consensus       879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~  907 (1034)
T KOG4190|consen  879 TRAIAVADKGNKLAAALSNGCIAILDARN  907 (1034)
T ss_pred             eeEEEeccCcchhhHHhcCCcEEEEecCC
Confidence            89999999999999999999999999763

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.68  E-value=0.0039  Score=58.12  Aligned_cols=145  Identities=17%  Similarity=0.228  Sum_probs=76.9

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccC----CCcceeeccceecCccCCcccceeeeeeeee-E
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDR----GHTQGRIEGWGRVPACPLCRTRVFSTFVKQI-I  100 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  100 (222)
                      ..+.|.+.+||||+++|+....+++|.+-. .+...+.+..-.    +.....-.+|+.-..       .|.+...+. .
T Consensus       119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeT-------QF~Gs~gK~aa  190 (928)
T PF04762_consen  119 VDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKET-------QFHGSAGKAAA  190 (928)
T ss_pred             EcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCccccCCCceeeeccCcccC-------ccCcchhhhhh
Confidence            567799999999999998888888886653 344444443211    111112234442111       111111000 0


Q ss_pred             e-eeeee-eccCCccccccCCCEEEEEEcCCCCEEEEEeC---C---CcEEEEeCCCCceEEEeccCCccEEEEEEcCCC
Q psy16881        101 P-TRVGV-YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV---D---KTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD  172 (222)
Q Consensus       101 ~-~~~~~-~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~---d---g~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~  172 (222)
                      . ..... ...+...+. +...-..|+|-.||++|+..+.   .   ..||||+-+ |++...-+.-...-.+++|-|.|
T Consensus       191 ~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG  268 (928)
T PF04762_consen  191 RQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG  268 (928)
T ss_pred             hhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC
Confidence            0 00000 000111222 3344567999999999888875   3   479999954 55443332222223467788888


Q ss_pred             CEEEEeeC
Q psy16881        173 SLLASGSN  180 (222)
Q Consensus       173 ~~l~s~s~  180 (222)
                      ++||+.-.
T Consensus       269 ~lIA~~q~  276 (928)
T PF04762_consen  269 NLIASSQR  276 (928)
T ss_pred             CEEEEEEE
Confidence            88877653

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.67  E-value=0.00084  Score=53.59  Aligned_cols=147  Identities=17%  Similarity=0.342  Sum_probs=90.9

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc-eEEeec--cCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS-LIMETN--DRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      ...|+.+.|...|.||++|...|.|.+|.-+... +...+.  .++|... +..                          
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~E-FDY--------------------------   78 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELE-FDY--------------------------   78 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccc-hhh--------------------------
Confidence            4568999999999999999999999999644321 100000  0000000 000                          


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCC--ceE-------------------------E
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKS--SLLVSGSVDKTVKLWDVPSL--TCI-------------------------K  154 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~--~~l~sg~~dg~I~iwd~~~~--~~~-------------------------~  154 (222)
                          ..   .+ .-...|..+.|..++  +.++..+.|++|++|.+...  +.+                         .
T Consensus        79 ----Lk---Sl-eieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lp  150 (460)
T COG5170          79 ----LK---SL-EIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLP  150 (460)
T ss_pred             ----hh---hc-cHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcc
Confidence                00   00 013456777776544  36777778999999986422  000                         0


Q ss_pred             Ee----------------ccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC----------------------------
Q psy16881        155 TL----------------ESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML----------------------------  190 (222)
Q Consensus       155 ~~----------------~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~----------------------------  190 (222)
                      .+                .+|..-|.+++|..+...++++ .|-.|.+|++.                            
T Consensus       151 rls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeF  229 (460)
T COG5170         151 RLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEF  229 (460)
T ss_pred             cccccceEEEeccceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhccc
Confidence            00                2344446788888888877766 57789999873                            


Q ss_pred             ----CCeEEEeeCCCcEEEEeCC
Q psy16881        191 ----ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       191 ----~~~l~s~~~d~~i~iwd~~  209 (222)
                          -.++.-++..|.|++-|+|
T Consensus       230 hp~~cn~fmYSsSkG~Ikl~DlR  252 (460)
T COG5170         230 HPEMCNVFMYSSSKGEIKLNDLR  252 (460)
T ss_pred             CHhHcceEEEecCCCcEEehhhh
Confidence                1356667779999999998

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.64  E-value=0.0074  Score=41.12  Aligned_cols=64  Identities=22%  Similarity=0.224  Sum_probs=38.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEE-cCCC---CEEEEeeCCCeEE
Q psy16881        118 TSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTF-SCDD---SLLASGSNDKTVT  185 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~-s~~~---~~l~s~s~D~~i~  185 (222)
                      +..|+.+.-... ..|+-+-.+|+|-+|+-...  +-.++..+. +.++.+ +.++   +-|++|..+|+|.
T Consensus        42 ~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R--lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   42 TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR--LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ccceEEEEEcCC-CEEEEEecCCEEEEEeCcce--eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            344555654443 56888888999999975432  333333333 445444 4332   4688888888874

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.63  E-value=0.024  Score=46.14  Aligned_cols=92  Identities=11%  Similarity=0.235  Sum_probs=60.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCC-ceEEEecc---------CCccEEEEEEcCCCCEEEEeeCC-CeEE
Q psy16881        118 TSAVTSVRFNHKSSLLVSGSV-DKTVKLWDVPSL-TCIKTLES---------HTRYVTCCTFSCDDSLLASGSND-KTVT  185 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~sg~~-dg~I~iwd~~~~-~~~~~~~~---------~~~~V~~~~~s~~~~~l~s~s~D-~~i~  185 (222)
                      ...-..+.|+|++++.+..++ +++|.+|.++.. ..+.+++.         ......++.++++|++|++.-.. ..|-
T Consensus       190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~  269 (346)
T COG2706         190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA  269 (346)
T ss_pred             CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence            455678999999998777765 889999988762 22222221         22345678889999988765321 1444


Q ss_pred             EEeCC---------------------------CCeEEEeeCC-CcEEEEeCC
Q psy16881        186 IWDML---------------------------ATLLASGSND-KTVTIWDMR  209 (222)
Q Consensus       186 lwd~~---------------------------~~~l~s~~~d-~~i~iwd~~  209 (222)
                      +|-+.                           ..+|+++.+| ..|.+|...
T Consensus       270 ~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         270 VFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             EEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence            54431                           3567766654 569999775

>KOG1275|consensus

Probab=97.62  E-value=0.0013  Score=59.21  Aligned_cols=67  Identities=28%  Similarity=0.409  Sum_probs=55.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEee---------CCCeEEEEeCC
Q psy16881        120 AVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS---------NDKTVTIWDML  190 (222)
Q Consensus       120 ~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s---------~D~~i~lwd~~  190 (222)
                      .|+-++  .+++++.+|...|+|.+-|.++.+.+.++.+|+..|.  .|+.+|+.|++++         .|..++|||++
T Consensus       179 ~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLR  254 (1118)
T KOG1275|consen  179 GVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLR  254 (1118)
T ss_pred             ceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeecccccee--eeeccCCeEEEeecccccccccccchhhhhhhh
Confidence            355555  3468999999999999999999999999999999875  4667899999887         46688999984

>smart00320 WD40 WD40 repeats

Probab=97.59  E-value=0.00025  Score=37.23  Aligned_cols=29  Identities=38%  Similarity=0.743  Sum_probs=27.0

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEe
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWR   55 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd   55 (222)
                      ...|.++.|.++++++++++.|+.+++|+
T Consensus        12 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       12 TGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            67899999999999999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.55  E-value=0.00031  Score=40.28  Aligned_cols=36  Identities=31%  Similarity=0.639  Sum_probs=31.2

Q ss_pred             eeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCC
Q psy16881         22 GSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSD   57 (222)
Q Consensus        22 ~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~   57 (222)
                      .+..+.+.|.+++|+|..++||.|..+|.|.+|++.
T Consensus         6 ~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen    6 GEKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            334456789999999999999999999999999983

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.47  E-value=0.026  Score=45.63  Aligned_cols=35  Identities=31%  Similarity=0.349  Sum_probs=26.0

Q ss_pred             EEEcCCCCeEEEecC-----CCeEEEEeCC-CCceEEeecc
Q psy16881         33 VRFSPDTRLLATGGD-----DETVTVWRSD-DLSLIMETND   67 (222)
Q Consensus        33 l~~spdg~~l~tgs~-----Dg~i~iwd~~-~~~~~~~~~~   67 (222)
                      -.||+||++|.+.-+     .|.|-|||.. +...+.++..
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s   96 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPS   96 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecC
Confidence            479999999988644     6889999998 4445555543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.45  E-value=0.048  Score=45.23  Aligned_cols=128  Identities=20%  Similarity=0.221  Sum_probs=76.0

Q ss_pred             eccceEEEEEcCCCCeEEEecC-CCeEEEEeCCCC-ceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGD-DETVTVWRSDDL-SLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~-Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      .+.....++++|++++|+++.. +|+|.++++.+. ........       +.                          .
T Consensus        85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~-------~~--------------------------~  131 (345)
T PF10282_consen   85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQT-------VR--------------------------H  131 (345)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEE-------EE--------------------------S
T ss_pred             CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeee-------cc--------------------------c
Confidence            4556677999999999988874 999999998752 22111100       00                          0


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCc--eE--EEec-cCCccEEEEEEcCCCCEEEE
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV-DKTVKLWDVPSLT--CI--KTLE-SHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~-dg~I~iwd~~~~~--~~--~~~~-~~~~~V~~~~~s~~~~~l~s  177 (222)
                      .+. +..  ....-.....++.++|++++++.... ...|.+|++....  +.  ..+. ......+.+.|+|++++++.
T Consensus       132 ~g~-g~~--~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv  208 (345)
T PF10282_consen  132 EGS-GPN--PDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYV  208 (345)
T ss_dssp             EEE-ESS--TTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEE
T ss_pred             CCC-CCc--ccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEE
Confidence            000 000  00112344677899999998877643 3468899886543  31  2222 22334678999999998887


Q ss_pred             ee-CCCeEEEEeC
Q psy16881        178 GS-NDKTVTIWDM  189 (222)
Q Consensus       178 ~s-~D~~i~lwd~  189 (222)
                      .. .++.|.++++
T Consensus       209 ~~e~s~~v~v~~~  221 (345)
T PF10282_consen  209 VNELSNTVSVFDY  221 (345)
T ss_dssp             EETTTTEEEEEEE
T ss_pred             ecCCCCcEEEEee
Confidence            65 4467777765

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.41  E-value=0.015  Score=50.12  Aligned_cols=58  Identities=5%  Similarity=-0.003  Sum_probs=35.4

Q ss_pred             EEEEEcCCCCEEEEEeC-CCc--EEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCC
Q psy16881        122 TSVRFNHKSSLLVSGSV-DKT--VKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSND  181 (222)
Q Consensus       122 ~~l~~~~~~~~l~sg~~-dg~--I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D  181 (222)
                      ....|+|+|++++..+. ++.  |.++|+.+++.. .+.... ......|+|+|+.|+..+.+
T Consensus       353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~~ps~spdG~~I~~~~~~  413 (448)
T PRK04792        353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-LDESPSVAPNGTMVIYSTTY  413 (448)
T ss_pred             cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-CCCCceECCCCCEEEEEEec
Confidence            34689999987766554 444  445687776542 232221 22245799999988765543

>KOG2314|consensus

Probab=97.39  E-value=0.00081  Score=57.40  Aligned_cols=102  Identities=15%  Similarity=0.249  Sum_probs=67.5

Q ss_pred             ceEEEEEcCCCCeEEEecCC-----------CeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee
Q psy16881         29 NMRCVRFSPDTRLLATGGDD-----------ETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK   97 (222)
Q Consensus        29 ~v~~l~~spdg~~l~tgs~D-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (222)
                      .|+-+.|||..+||+|-|..           ..+.|||+.++.....+..                              
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~------------------------------  300 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPV------------------------------  300 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceec------------------------------
Confidence            48889999999999887642           5678888877665543310                              


Q ss_pred             eeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881         98 QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s  177 (222)
                                      +......-.-..|+.+++++|--.. ++|.||+..+..++-.-...-..|...+|+|.+++||-
T Consensus       301 ----------------~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  301 ----------------IKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             ----------------cCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence                            0000000112678999999888776 58889998876655433333445778888888877764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.36  E-value=0.0048  Score=52.25  Aligned_cols=67  Identities=13%  Similarity=0.438  Sum_probs=47.2

Q ss_pred             EEEEEcCCCCEEEEEeCC---CcEEEEeCCCC-ceEEEeccCCccEEEEEEcCCCCEEEEeeC------CCeEEEEeCC
Q psy16881        122 TSVRFNHKSSLLVSGSVD---KTVKLWDVPSL-TCIKTLESHTRYVTCCTFSCDDSLLASGSN------DKTVTIWDML  190 (222)
Q Consensus       122 ~~l~~~~~~~~l~sg~~d---g~I~iwd~~~~-~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~------D~~i~lwd~~  190 (222)
                      +.+-|+|.+++++.++-|   |.|-+||.... +++..+.+...  .-+.|+|++.++.+...      |..|+|||+.
T Consensus       319 NT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~--s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         319 NTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             ccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc--eEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence            346688999988887765   46899998654 44446666443  34679999999887763      4567777764

>KOG4640|consensus

Probab=97.36  E-value=0.002  Score=55.85  Aligned_cols=93  Identities=18%  Similarity=0.238  Sum_probs=67.7

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      +..+.-+.|+|.-.++|++-.+|.|.+.++. ...++++.                                        
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip----------------------------------------   58 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIP----------------------------------------   58 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEecc----------------------------------------
Confidence            4557778999999999999999999998765 22222210                                        


Q ss_pred             eccCCccccccCCCE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe-ccCCccEEEEEEc
Q psy16881        107 YGQDSETVGRHTSAV-TSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL-ESHTRYVTCCTFS  169 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i-~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~-~~~~~~V~~~~~s  169 (222)
                               -|...+ .+++|.|+|+.++.|-.||+|++.|..++..+..+ ..-...|.++.|+
T Consensus        59 ---------~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   59 ---------IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             ---------CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeecc
Confidence                     123334 48999999999999999999999999988776652 1123446677775

>KOG3621|consensus

Probab=97.35  E-value=0.0025  Score=55.91  Aligned_cols=116  Identities=15%  Similarity=0.166  Sum_probs=83.2

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY  107 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (222)
                      ..|.--+++-.+++++.|+.-|.|++|.-..+....-                                           
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-------------------------------------------   70 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-------------------------------------------   70 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-------------------------------------------
Confidence            4455556778899999999999999997543221100                                           


Q ss_pred             ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-----EEEe-ccCCccEEEEEEcCCCCEEEEeeCC
Q psy16881        108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC-----IKTL-ESHTRYVTCCTFSCDDSLLASGSND  181 (222)
Q Consensus       108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~-----~~~~-~~~~~~V~~~~~s~~~~~l~s~s~D  181 (222)
                           ..++-.+.+..+.+++...++|.|+..|.|.++-++....     +... +.|...|+|++|++++..+++|-..
T Consensus        71 -----~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~  145 (726)
T KOG3621|consen   71 -----KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQ  145 (726)
T ss_pred             -----cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCC
Confidence                 0011133455667888889999999999999998764322     2222 2367889999999999999999999


Q ss_pred             CeEEEEeCCC
Q psy16881        182 KTVTIWDMLA  191 (222)
Q Consensus       182 ~~i~lwd~~~  191 (222)
                      |+|.+-.+..
T Consensus       146 Gkv~~~~L~s  155 (726)
T KOG3621|consen  146 GKVVLTELDS  155 (726)
T ss_pred             ceEEEEEech
Confidence            9998877653

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.34  E-value=0.08  Score=45.20  Aligned_cols=149  Identities=6%  Similarity=-0.080  Sum_probs=72.9

Q ss_pred             ceEEEEEcCCCCe-EEEecCC---CeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee---eeeEe
Q psy16881         29 NMRCVRFSPDTRL-LATGGDD---ETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV---KQIIP  101 (222)
Q Consensus        29 ~v~~l~~spdg~~-l~tgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  101 (222)
                      .+..-+|||||+. ++..+.+   ..|.++|+.+++...-....+....  .     .++++.....+....   ..+..
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~--~-----~~SPDG~~la~~~~~~g~~~Iy~  261 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVV--S-----DVSKDGSKLLLTMAPKGQPDIYL  261 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEe--e-----EECCCCCEEEEEEccCCCcEEEE
Confidence            4566799999984 6644443   5688888877654332221111100  0     112222222222111   11111


Q ss_pred             eeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEe
Q psy16881        102 TRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV-DK--TVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG  178 (222)
Q Consensus       102 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~-dg--~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~  178 (222)
                      .+  ..+.....+..+........|+|+|+.++-.+. .+  .|.+.|+.+++....... ...  ...|||+|+.|+..
T Consensus       262 ~d--l~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~  336 (419)
T PRK04043        262 YD--TNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYS  336 (419)
T ss_pred             EE--CCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEE
Confidence            11  111111122222222234579999986555543 33  466778876655322211 111  24899999988866


Q ss_pred             eCC---------CeEEEEeC
Q psy16881        179 SND---------KTVTIWDM  189 (222)
Q Consensus       179 s~D---------~~i~lwd~  189 (222)
                      +..         ..|.+.|+
T Consensus       337 ~~~~~~~~~~~~~~I~v~d~  356 (419)
T PRK04043        337 SRETNNEFGKNTFNLYLIST  356 (419)
T ss_pred             EcCCCcccCCCCcEEEEEEC
Confidence            543         25667776

>KOG1912|consensus

Probab=97.29  E-value=0.007  Score=53.95  Aligned_cols=130  Identities=15%  Similarity=0.135  Sum_probs=81.1

Q ss_pred             CCcccceEEEee-eeeeccceEEEEEcCC------C------CeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeecc
Q psy16881         11 SLFNGTELILRG-SVHIGSNMRCVRFSPD------T------RLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEG   77 (222)
Q Consensus        11 ~~~~~~~~~~~~-~~~~~~~v~~l~~spd------g------~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~   77 (222)
                      .+.+....++-+ .++|++.|..++|.|-      +      -+||++.-.|.|.+||+.....+..+            
T Consensus        38 ~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l------------  105 (1062)
T KOG1912|consen   38 SVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL------------  105 (1062)
T ss_pred             EEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh------------
Confidence            344444454433 3788999999999874      1      25778888999999997644332221            


Q ss_pred             ceecCccCCcccceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEc---CCC-CEEEEEeCCCcEEEEeCCCCceE
Q psy16881         78 WGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFN---HKS-SLLVSGSVDKTVKLWDVPSLTCI  153 (222)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~-~~l~sg~~dg~I~iwd~~~~~~~  153 (222)
                                                           ..|..++..++|-   ++. ..++.-...++|-+|++.+|+.+
T Consensus       106 -------------------------------------~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~  148 (1062)
T KOG1912|consen  106 -------------------------------------SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF  148 (1062)
T ss_pred             -------------------------------------cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee
Confidence                                                 1123333334332   333 34555555678999999999988


Q ss_pred             EEeccCCccEEEEEEcC-CCCEEEEeeCCCeEEEEeC
Q psy16881        154 KTLESHTRYVTCCTFSC-DDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       154 ~~~~~~~~~V~~~~~s~-~~~~l~s~s~D~~i~lwd~  189 (222)
                      -+.........|+.++| +.+.+..-+..|.+.+-+.
T Consensus       149 Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  149 WKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             eccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence            77665555667788887 4455554445556666554

>KOG2066|consensus

Probab=97.22  E-value=0.0047  Score=55.01  Aligned_cols=89  Identities=17%  Similarity=0.181  Sum_probs=63.7

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCC-----CCEEEEeeCCCeEEEEeC------------
Q psy16881        127 NHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCD-----DSLLASGSNDKTVTIWDM------------  189 (222)
Q Consensus       127 ~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~-----~~~l~s~s~D~~i~lwd~------------  189 (222)
                      +.+|.+++|++.||+|.|-.+-+.+....+.- ..++.+++++|+     .+.+++|+.-| +.++.-            
T Consensus        80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~  157 (846)
T KOG2066|consen   80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS  157 (846)
T ss_pred             ccCCceEEEecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence            45689999999999999988876655544432 467889999997     57888888887 777653            


Q ss_pred             -----------CCCeEEEeeCCCcEEEEeCCCC-ccccCCC
Q psy16881        190 -----------LATLLASGSNDKTVTIWDMRGN-LSVDVPL  218 (222)
Q Consensus       190 -----------~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~  218 (222)
                                 .++++|=++.+ .|++||+... ....+|+
T Consensus       158 ~~eG~I~~i~W~g~lIAWand~-Gv~vyd~~~~~~l~~i~~  197 (846)
T KOG2066|consen  158 EGEGPIHSIKWRGNLIAWANDD-GVKVYDTPTRQRLTNIPP  197 (846)
T ss_pred             cCccceEEEEecCcEEEEecCC-CcEEEeccccceeeccCC
Confidence                       14566666544 5999998733 3444544

>KOG2314|consensus

Probab=97.20  E-value=0.0019  Score=55.28  Aligned_cols=85  Identities=14%  Similarity=0.148  Sum_probs=56.3

Q ss_pred             CCEEEEEEcCCCCEEEEE---eCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCCCCeEE
Q psy16881        119 SAVTSVRFNHKSSLLVSG---SVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLA  195 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~sg---~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~~~l~  195 (222)
                      ...+.+.|+|.|+.++.+   |..|.+..+|+.-..+...-...+-..+.+.|+|.|++++|++.-..            
T Consensus       493 ~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wr------------  560 (698)
T KOG2314|consen  493 KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWR------------  560 (698)
T ss_pred             cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhh------------
Confidence            446789999999977766   44688999998742222111222234567899999999999875443            


Q ss_pred             EeeCCCcEEEEeCCCCccccC
Q psy16881        196 SGSNDKTVTIWDMRGNLSVDV  216 (222)
Q Consensus       196 s~~~d~~i~iwd~~~~~~~~~  216 (222)
                       ...|..-+||++.+.++.+.
T Consensus       561 -hk~d~GYri~tfqGrll~~~  580 (698)
T KOG2314|consen  561 -HKVDNGYRIFTFQGRLLKED  580 (698)
T ss_pred             -hccccceEEEEeecHHHHHH
Confidence             23466667777776655443

>KOG1912|consensus

Probab=97.20  E-value=0.0024  Score=56.78  Aligned_cols=92  Identities=16%  Similarity=0.380  Sum_probs=63.4

Q ss_pred             cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEc-CC----------------CCEEEEee
Q psy16881        117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS-CD----------------DSLLASGS  179 (222)
Q Consensus       117 h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s-~~----------------~~~l~s~s  179 (222)
                      ...+|+.+..+..++|++..=.+.-+.|||+++..++......--.|+.+.|+ |.                .+..++.+
T Consensus       520 despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds  599 (1062)
T KOG1912|consen  520 DESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDS  599 (1062)
T ss_pred             CcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhceeeecc
Confidence            46789999999999999999999999999998765544433322236667776 21                23344444


Q ss_pred             CCCeEEEEeC-----------------------------CCCeEEEeeCCCcEEEEeCCC
Q psy16881        180 NDKTVTIWDM-----------------------------LATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       180 ~D~~i~lwd~-----------------------------~~~~l~s~~~d~~i~iwd~~~  210 (222)
                      .|  .+++.+                             +...++.|..+|.+++||+.+
T Consensus       600 ~e--s~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk~d~lv~GD~~GNl~~WDlg~  657 (1062)
T KOG1912|consen  600 VE--SRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWKDDILVVGDVEGNLVVWDLGR  657 (1062)
T ss_pred             cc--chheehhhhhhhhccccchhhHHHHHHHHHHhhhccCCeeEeecccCceeEEeccc
Confidence            22  233332                             146799999999999999863

>KOG3617|consensus

Probab=97.17  E-value=0.0046  Score=55.64  Aligned_cols=69  Identities=17%  Similarity=0.250  Sum_probs=59.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881        121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      +++++|+|..-.++.|=.-|.+.+|...+.+.-.-...|..+|.-+.||++|..++|+-.=|.+.+|-.
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~  130 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY  130 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence            456999998888888888899999998776655555679999999999999999999999999999954

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.11  E-value=0.012  Score=46.50  Aligned_cols=45  Identities=18%  Similarity=0.416  Sum_probs=37.6

Q ss_pred             cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCc
Q psy16881        117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTR  161 (222)
Q Consensus       117 h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~  161 (222)
                      ....|..+.++|+|..|++.+.+|.|.+|++.+-....++..++.
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq  272 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ  272 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence            356788999999999999999999999999988777666655443

>KOG1920|consensus

Probab=97.11  E-value=0.031  Score=52.21  Aligned_cols=67  Identities=13%  Similarity=0.216  Sum_probs=43.2

Q ss_pred             EEEEEcCCCCEEEEE-----eCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEee---CCCeEEEEeC
Q psy16881        122 TSVRFNHKSSLLVSG-----SVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS---NDKTVTIWDM  189 (222)
Q Consensus       122 ~~l~~~~~~~~l~sg-----~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s---~D~~i~lwd~  189 (222)
                      ++|.|--+|+++++.     ..-+.|++||.+ +.+-..-......-.+++|=|.|..+++..   .|..|.+|.-
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr  273 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER  273 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec
Confidence            357888889988873     333799999976 443222222222235788989998888744   3446777764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.00  E-value=0.055  Score=45.30  Aligned_cols=59  Identities=15%  Similarity=0.030  Sum_probs=41.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEecc-CCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        130 SSLLVSGSVDKTVKLWDVPSLTCIKTLES-HTRYVTCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       130 ~~~l~sg~~dg~I~iwd~~~~~~~~~~~~-~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      ++.++.++.+|.+..+|..+++.+.+... ......+...  .+..|++++.+|.+.++|..
T Consensus       279 ~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~  338 (377)
T TIGR03300       279 DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE  338 (377)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence            56788888899999999998887654422 1111111112  46788889999999999874

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2041|consensus

Probab=97.00  E-value=0.0042  Score=54.87  Aligned_cols=137  Identities=16%  Similarity=0.131  Sum_probs=89.0

Q ss_pred             CCCCCCCCcccceEEEeee-eeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCc
Q psy16881          5 PMGDGPSLFNGTELILRGS-VHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPA   83 (222)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (222)
                      |++|-.-|-+.-.+++.+- ..|.++|..+.|.-+.+.|-|...+|.|.+|-+.++.-..+.-                 
T Consensus        48 ~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi-----------------  110 (1189)
T KOG2041|consen   48 TDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI-----------------  110 (1189)
T ss_pred             CcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh-----------------
Confidence            4455444555555544322 3348999999999888899999999999999875432111100                 


Q ss_pred             cCCcccceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE-EEeccCCcc
Q psy16881         84 CPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCI-KTLESHTRY  162 (222)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~-~~~~~~~~~  162 (222)
                                                    -...++.|.+++|+.+|..+.....||.|.+=.+.-...- +++++.  .
T Consensus       111 ------------------------------NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~  158 (1189)
T KOG2041|consen  111 ------------------------------NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--L  158 (1189)
T ss_pred             ------------------------------hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh--e
Confidence                                          0113556777888888887777788887766444321110 122221  1


Q ss_pred             EEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        163 VTCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       163 V~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      ..-+.|++|...+..+-+.|.+.+||..
T Consensus       159 l~hv~ws~D~~~~Lf~~ange~hlydnq  186 (1189)
T KOG2041|consen  159 LAHVLWSEDLEQALFKKANGETHLYDNQ  186 (1189)
T ss_pred             ccceeecccHHHHHhhhcCCcEEEeccc
Confidence            2357899999999999999999999974

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.99  E-value=0.075  Score=43.32  Aligned_cols=125  Identities=11%  Similarity=0.188  Sum_probs=77.2

Q ss_pred             eccceEEEEEcCCCCeEEE-ecCCCeEEEEeCCCC-ceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         26 IGSNMRCVRFSPDTRLLAT-GGDDETVTVWRSDDL-SLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~t-gs~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      .++--|.|.|+|++++... .--+++|.+|..+.. ....+...             +..                    
T Consensus       189 ~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~-------------i~t--------------------  235 (346)
T COG2706         189 PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT-------------IDT--------------------  235 (346)
T ss_pred             CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee-------------ecc--------------------
Confidence            4666788999999998654 445999999987653 11111100             000                    


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCC--CCce--EEEeccCCccEEEEEEcCCCCEEEEe
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV-DKTVKLWDVP--SLTC--IKTLESHTRYVTCCTFSCDDSLLASG  178 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~-dg~I~iwd~~--~~~~--~~~~~~~~~~V~~~~~s~~~~~l~s~  178 (222)
                         ..   ..+.+ ..+.-.|.++++|++|+.... ...|-++.+.  ++++  +.....+-...+...|++.+++|+++
T Consensus       236 ---lP---~dF~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa  308 (346)
T COG2706         236 ---LP---EDFTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA  308 (346)
T ss_pred             ---Cc---cccCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence               00   00111 234456788999998887643 3467777664  2332  22233344457889999999999998


Q ss_pred             eCCC-eEEEEeCC
Q psy16881        179 SNDK-TVTIWDML  190 (222)
Q Consensus       179 s~D~-~i~lwd~~  190 (222)
                      .++. .|.+|.+.
T Consensus       309 ~q~sd~i~vf~~d  321 (346)
T COG2706         309 NQKSDNITVFERD  321 (346)
T ss_pred             ccCCCcEEEEEEc
Confidence            8664 68888764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=96.96  E-value=0.13  Score=43.97  Aligned_cols=56  Identities=14%  Similarity=0.014  Sum_probs=36.7

Q ss_pred             EEEcCCCCEEEEEeCC---------CcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCC
Q psy16881        124 VRFNHKSSLLVSGSVD---------KTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSND  181 (222)
Q Consensus       124 l~~~~~~~~l~sg~~d---------g~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D  181 (222)
                      ..|+|+|+.++..+..         ..|.+.|+.++.. ..+.... ......|+|+|+.|+..+.+
T Consensus       324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANG-VNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCC-CcCCeEECCCCCEEEEEEcc
Confidence            4799999976655543         2577778877654 3333322 23357899999988876643

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.87  E-value=0.071  Score=45.77  Aligned_cols=154  Identities=14%  Similarity=0.136  Sum_probs=70.7

Q ss_pred             CcccceEEE--eeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCccc
Q psy16881         12 LFNGTELIL--RGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT   89 (222)
Q Consensus        12 ~~~~~~~~~--~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (222)
                      +-+|..+.+  +.-....-..+.+.++|+|+++++ +.||.-.||.....+.....  .+.      .+  +... ..  
T Consensus        15 ~~dg~~~~l~~k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~G--~g~------~~--vw~~-~n--   80 (443)
T PF04053_consen   15 IKDGERLPLSVKELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAFG--SGL------SF--VWSS-RN--   80 (443)
T ss_dssp             --TTS-B----EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEEE--E-S------EE--EE-T-SS--
T ss_pred             cCCCceeeEEeccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccccC--cee------EE--EEec-Cc--
Confidence            445554433  222333455788999999999988 56889889874433322110  000      00  0000 00  


Q ss_pred             ceeeeee--eeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEE
Q psy16881         90 RVFSTFV--KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCT  167 (222)
Q Consensus        90 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~  167 (222)
                       .++...  ..+.... .........+. ....+..+-.   |..+...+. +.|.+||..+++.+.++...  .|..+.
T Consensus        81 -~yAv~~~~~~I~I~k-n~~~~~~k~i~-~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~  151 (443)
T PF04053_consen   81 -RYAVLESSSTIKIYK-NFKNEVVKSIK-LPFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVI  151 (443)
T ss_dssp             -EEEEE-TTS-EEEEE-TTEE-TT------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEE
T ss_pred             -cEEEEECCCeEEEEE-cCccccceEEc-CCcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEE
Confidence             111111  1111100 00000100111 1123444422   776666654 48999999999999988754  388999


Q ss_pred             EcCCCCEEEEeeCCCeEEEEeC
Q psy16881        168 FSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       168 ~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      |++++.+++-.+.+ .+.+++.
T Consensus       152 Ws~~g~~val~t~~-~i~il~~  172 (443)
T PF04053_consen  152 WSDDGELVALVTKD-SIYILKY  172 (443)
T ss_dssp             E-TTSSEEEEE-S--SEEEEEE
T ss_pred             EECCCCEEEEEeCC-eEEEEEe
Confidence            99999999988877 4666543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.85  E-value=0.15  Score=42.66  Aligned_cols=83  Identities=16%  Similarity=0.118  Sum_probs=58.2

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC-------------------
Q psy16881        130 SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML-------------------  190 (222)
Q Consensus       130 ~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~-------------------  190 (222)
                      +..++.++.+|.+..+|.++++.+-......  ....  ...+..|+.++.||.+..+|..                   
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp  316 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASS--YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAP  316 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeeccCC--ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccC
Confidence            5678888899999999999988765544211  1111  1245677777788888887763                   


Q ss_pred             ---CCeEEEeeCCCcEEEEeCC-CCccccC
Q psy16881        191 ---ATLLASGSNDKTVTIWDMR-GNLSVDV  216 (222)
Q Consensus       191 ---~~~l~s~~~d~~i~iwd~~-~~~~~~~  216 (222)
                         ...++.++.++.++++|.+ ++..-+.
T Consensus       317 ~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~  346 (377)
T TIGR03300       317 AVVGGYLVVGDFEGYLHWLSREDGSFVARL  346 (377)
T ss_pred             EEECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence               2357888899999999987 6655443

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.80  E-value=0.083  Score=36.05  Aligned_cols=60  Identities=18%  Similarity=0.207  Sum_probs=44.9

Q ss_pred             EcCCC-CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881        126 FNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       126 ~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      |..+| +.|+.|+.|..||+|+-  ...+.++..+ +.|.+++-... ..++.+.++|+|-+|+-
T Consensus        10 ~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen   10 FDGDGENELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             cCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            33444 58999999999999973  3567777654 45777776544 67889999999988874

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.80  E-value=0.056  Score=45.71  Aligned_cols=152  Identities=16%  Similarity=0.196  Sum_probs=77.1

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeecccee--cCccCCcccceeeeeeeeeEeeeeee
Q psy16881         29 NMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGR--VPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        29 ~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      .|..+.|.++-.-|++|...|.|-||+................+.....+..  .+...................     
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~-----   77 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFL-----   77 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEE-----
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccC-----
Confidence            3788999999888999999999999987643221100000000000000000  000000000000000000000     


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE--ecc------CCccEEEEEEcC-----C--
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKT--LES------HTRYVTCCTFSC-----D--  171 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~--~~~------~~~~V~~~~~s~-----~--  171 (222)
                         ....+...+++|++++.+.- .+++.|..+|.+.|.|++....+..  +..      ....|+++.|..     |  
T Consensus        78 ---P~~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   78 ---PLTLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             ---EEEEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             ---chhheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence               00112234789999998744 4899999999999999987666543  222      334688888862     2  


Q ss_pred             -CCEEEEeeCCCeEEEEeC
Q psy16881        172 -DSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       172 -~~~l~s~s~D~~i~lwd~  189 (222)
                       +-.+.+|...|.+.+|.+
T Consensus       154 SSi~L~vGTn~G~v~~fkI  172 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKI  172 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEE
T ss_pred             cceEEEEEeCCCCEEEEEE
Confidence             357888999999999976

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1832|consensus

Probab=96.80  E-value=0.0023  Score=57.76  Aligned_cols=111  Identities=23%  Similarity=0.305  Sum_probs=74.9

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      .+.-.|++|+-+.+.|++|+-.|.|++|++.++.....                                          
T Consensus      1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s------------------------------------------ 1138 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES------------------------------------------ 1138 (1516)
T ss_pred             ccceeeEEeecCCceEEeeeccceEEEEEccCcccccc------------------------------------------
Confidence            68889999999999999999999999999875432211                                          


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeC-CC-cEEEEeCCC-CceEEEeccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV-DK-TVKLWDVPS-LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKT  183 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~-dg-~I~iwd~~~-~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~  183 (222)
                             ...|.++|+-+.-+.+|.++.+.+. .. ...+|+..+ +....++..    -.++.|+.....-+.|+....
T Consensus      1139 -------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~ 1207 (1516)
T KOG1832|consen 1139 -------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADD 1207 (1516)
T ss_pred             -------ccccccccccccccCCcceeeeeccccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccc
Confidence                   1247888888888888875554443 33 466899864 344444433    236777754333333444456


Q ss_pred             EEEEeCC
Q psy16881        184 VTIWDML  190 (222)
Q Consensus       184 i~lwd~~  190 (222)
                      ..+||+.
T Consensus      1208 a~~YDvq 1214 (1516)
T KOG1832|consen 1208 ALLYDVQ 1214 (1516)
T ss_pred             eEEEecc
Confidence            8899984

>KOG1008|consensus

Probab=96.78  E-value=0.00073  Score=58.66  Aligned_cols=89  Identities=26%  Similarity=0.407  Sum_probs=63.8

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcC-CCCEEEEeeCCCeEEEEeC-C------
Q psy16881        119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSC-DDSLLASGSNDKTVTIWDM-L------  190 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~-~~~~l~s~s~D~~i~lwd~-~------  190 (222)
                      ....+++|..+.+.+.+|....++.+.|+++.. .....-.++.+..++++| ..+++++-. |+.|-+||. .      
T Consensus       155 ~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl  232 (783)
T KOG1008|consen  155 DGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPL  232 (783)
T ss_pred             cCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHH
Confidence            345578888778899999999999999998432 222222455677788888 677776665 899999992 1      


Q ss_pred             -----------------------CCeEEEeeCC-CcEEEEeCC
Q psy16881        191 -----------------------ATLLASGSND-KTVTIWDMR  209 (222)
Q Consensus       191 -----------------------~~~l~s~~~d-~~i~iwd~~  209 (222)
                                             +.++++.+.| ++|+++|+.
T Consensus       233 ~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  233 QIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             HHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence                                   2356666654 689999876

>KOG1832|consensus

Probab=96.74  E-value=0.0024  Score=57.69  Aligned_cols=99  Identities=21%  Similarity=0.323  Sum_probs=77.9

Q ss_pred             cccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEee-CCC-eEEEEeCC
Q psy16881        113 TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS-NDK-TVTIWDML  190 (222)
Q Consensus       113 ~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s-~D~-~i~lwd~~  190 (222)
                      .+..|....+|++|+...+.++.|+..|.|++++..+|........|.+.|+-+.-+.+|..+.+.+ +.. -..+|++.
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence            4566788899999999999999999999999999999998889999999999999999998777644 333 46689874


Q ss_pred             C--------------------CeEEEeeCCCcEEEEeCCCC
Q psy16881        191 A--------------------TLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       191 ~--------------------~~l~s~~~d~~i~iwd~~~~  211 (222)
                      .                    ..-+.|.+-....+||+.+.
T Consensus      1176 s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1176 STGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTC 1216 (1516)
T ss_pred             cccCccccccccceeehhhhHHHHHhcccccceEEEecccC
Confidence            1                    11223344456889998754

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.72  E-value=0.096  Score=46.39  Aligned_cols=69  Identities=14%  Similarity=0.197  Sum_probs=50.9

Q ss_pred             CEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCce------------EEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881        120 AVTSVRFNHKSSLLVSGS-VDKTVKLWDVPSLTC------------IKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI  186 (222)
Q Consensus       120 ~i~~l~~~~~~~~l~sg~-~dg~I~iwd~~~~~~------------~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l  186 (222)
                      ....+.++|+|++++.++ .+++|.|.|+.+.+.            +.+......+. -.+|+++|+...|-.-|..|..
T Consensus       322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPL-HTaFDg~G~aytslf~dsqv~k  400 (635)
T PRK02888        322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPL-HTAFDGRGNAYTTLFLDSQIVK  400 (635)
T ss_pred             CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcc-eEEECCCCCEEEeEeecceeEE
Confidence            345688999999766554 589999999987552            33443333332 4678999988888888999999


Q ss_pred             EeC
Q psy16881        187 WDM  189 (222)
Q Consensus       187 wd~  189 (222)
                      ||+
T Consensus       401 wn~  403 (635)
T PRK02888        401 WNI  403 (635)
T ss_pred             Eeh
Confidence            997

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=96.57  E-value=0.23  Score=42.51  Aligned_cols=39  Identities=23%  Similarity=0.464  Sum_probs=33.2

Q ss_pred             cceEEEEEcCCCCeEEEecCCCe---------------EEEEeCCCCceEEeec
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDET---------------VTVWRSDDLSLIMETN   66 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~---------------i~iwd~~~~~~~~~~~   66 (222)
                      ..|..+.|||.++||.+-+..+.               +.+||..++..+..+.
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~  125 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFN  125 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeecc
Confidence            56999999999999999887766               8899999888877653

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.53  E-value=0.011  Score=33.85  Aligned_cols=33  Identities=18%  Similarity=0.319  Sum_probs=29.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q psy16881        118 TSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT  151 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~  151 (222)
                      ...|.+++|+|....+|.++.+|.|.++.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            456899999999999999999999999998 444

>KOG2315|consensus

Probab=96.51  E-value=0.06  Score=46.29  Aligned_cols=91  Identities=12%  Similarity=0.204  Sum_probs=64.5

Q ss_pred             CCCEEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCC---CeEEEEeCCCC
Q psy16881        118 TSAVTSVRFNHKSSLLVSG--SVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSND---KTVTIWDMLAT  192 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~sg--~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D---~~i~lwd~~~~  192 (222)
                      .++|.++.|+++++.++..  -.-.++.|+|++ +..+..+-  +.+-.++-|+|.|++|+.++.+   |.+.+||+...
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~  346 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR  346 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence            5889999999999865554  446689999987 56666653  3445688999999999998877   79999998643


Q ss_pred             eEEEe--eCCCcEEEEeCCCC
Q psy16881        193 LLASG--SNDKTVTIWDMRGN  211 (222)
Q Consensus       193 ~l~s~--~~d~~i~iwd~~~~  211 (222)
                      .+++.  -.|-++-=|..+++
T Consensus       347 K~i~~~~a~~tt~~eW~PdGe  367 (566)
T KOG2315|consen  347 KLIAKFKAANTTVFEWSPDGE  367 (566)
T ss_pred             hhccccccCCceEEEEcCCCc
Confidence            32222  12444555555544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.46  E-value=0.3  Score=38.20  Aligned_cols=58  Identities=16%  Similarity=0.192  Sum_probs=43.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEc-CCCCEEEEee
Q psy16881        121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS-CDDSLLASGS  179 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s-~~~~~l~s~s  179 (222)
                      .-.++++.+|++.++....+.|.++|-+ ++.+..+......+++++|- ++.+.|+..+
T Consensus       186 pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  186 PDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             CCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            5678899999987777778999999976 88888777665689999994 5656555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.42  E-value=0.3  Score=37.70  Aligned_cols=78  Identities=17%  Similarity=0.139  Sum_probs=52.1

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeccCCcc----------E-EEEEEcCCCCEEEEeeCCCe-EEEEeCC-------
Q psy16881        130 SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRY----------V-TCCTFSCDDSLLASGSNDKT-VTIWDML-------  190 (222)
Q Consensus       130 ~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~----------V-~~~~~s~~~~~l~s~s~D~~-i~lwd~~-------  190 (222)
                      ++.++.+..++.|..+|.++++.+.+.......          + ..+.+. ++ .++.++.++. +.+ |+.       
T Consensus       122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~w~  198 (238)
T PF13360_consen  122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKLWS  198 (238)
T ss_dssp             TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEEEE
T ss_pred             cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEEEE
Confidence            778888888999999999999988776553321          1 122222 33 5555555553 444 542       


Q ss_pred             -------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        191 -------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       191 -------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                                   ...++.++.++.+..||+++
T Consensus       199 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  199 KPISGIYSLPSVDGGTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             ECSS-ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred             ecCCCccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence                         34577777899999999984

...

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.41  E-value=0.29  Score=44.92  Aligned_cols=69  Identities=12%  Similarity=0.146  Sum_probs=49.6

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE-EeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881        118 TSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIK-TLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~-~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      +....|++=..+ .+||.|+.+|.||+||- .++..+ .+.+-..+|..+..+.||++|+..+.. .+.|++.
T Consensus       577 ~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t  646 (794)
T PF08553_consen  577 KNNFSCFATTED-GYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT  646 (794)
T ss_pred             CCCceEEEecCC-ceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence            345667765544 47999999999999994 333332 344556789999999999999877755 5667664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=96.38  E-value=0.91  Score=42.84  Aligned_cols=72  Identities=19%  Similarity=0.325  Sum_probs=46.5

Q ss_pred             cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eEE-Eec-cCCccEEEEEEcCCC-CEEEEeeCCCeEEEEeC
Q psy16881        117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT-CIK-TLE-SHTRYVTCCTFSCDD-SLLASGSNDKTVTIWDM  189 (222)
Q Consensus       117 h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~-~~~-~~~-~~~~~V~~~~~s~~~-~~l~s~s~D~~i~lwd~  189 (222)
                      ....|..++|++++..|+..-.|. |.+|-+.+-. .++ ++. .....+..+.|||.. ..|...+.++.+..+++
T Consensus       303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            456789999999999999877654 9999876532 121 221 112234458888854 44666666566666554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.25  E-value=0.41  Score=37.49  Aligned_cols=72  Identities=11%  Similarity=0.155  Sum_probs=49.4

Q ss_pred             CEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCC-c------eEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCCC
Q psy16881        120 AVTSVRFNHKSSLLV-SGSVDKTVKLWDVPSL-T------CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA  191 (222)
Q Consensus       120 ~i~~l~~~~~~~~l~-sg~~dg~I~iwd~~~~-~------~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~  191 (222)
                      ..+.++|+++++.|+ +-+..+.|..+++... .      .+..+.........++++.+|++.++....+.|.++|..+
T Consensus       135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G  214 (246)
T PF08450_consen  135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG  214 (246)
T ss_dssp             SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS
T ss_pred             cccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc
Confidence            357899999998765 5566778888887522 2      1222233233477899999999888877788899998754

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.13  E-value=0.1  Score=40.29  Aligned_cols=19  Identities=16%  Similarity=0.118  Sum_probs=14.5

Q ss_pred             CCCeEEEEeCCCCceEEee
Q psy16881         47 DDETVTVWRSDDLSLIMET   65 (222)
Q Consensus        47 ~Dg~i~iwd~~~~~~~~~~   65 (222)
                      ++|+|..||..+++.+...
T Consensus         1 ~~g~l~~~d~~tG~~~W~~   19 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSY   19 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEECCCCCEEEEE
Confidence            3688999998888777665

...

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.93  E-value=0.63  Score=36.79  Aligned_cols=141  Identities=11%  Similarity=0.166  Sum_probs=76.0

Q ss_pred             eeeccceEEEEEcCCCC-eEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee
Q psy16881         24 VHIGSNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT  102 (222)
Q Consensus        24 ~~~~~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (222)
                      +.+...++.|+|.|+.+ ++++....+.|.-++. ++..+.....                                   
T Consensus        18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l-----------------------------------   61 (248)
T PF06977_consen   18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPL-----------------------------------   61 (248)
T ss_dssp             TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------------------------
T ss_pred             CCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeC-----------------------------------
Confidence            34456699999999855 6667777777766664 3343332210                                   


Q ss_pred             eeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC------ceEEEec-----cCCccEEEEEEcCC
Q psy16881        103 RVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL------TCIKTLE-----SHTRYVTCCTFSCD  171 (222)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~------~~~~~~~-----~~~~~V~~~~~s~~  171 (222)
                                  .+ .+..+.|.+-.++.++++--.++.+.+.++...      ..+..+.     .++..+..++|++.
T Consensus        62 ------------~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~  128 (248)
T PF06977_consen   62 ------------DG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPK  128 (248)
T ss_dssp             ------------SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETT
T ss_pred             ------------CC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCC
Confidence                        01 123456666655656665545777777776321      1112221     24455788999998


Q ss_pred             CCEEEEeeCCCeEEEEeCC-----------------------------------CCeEEEeeCCCcEEEEeCCCCcc
Q psy16881        172 DSLLASGSNDKTVTIWDML-----------------------------------ATLLASGSNDKTVTIWDMRGNLS  213 (222)
Q Consensus       172 ~~~l~s~s~D~~i~lwd~~-----------------------------------~~~l~s~~~d~~i~iwd~~~~~~  213 (222)
                      ++.|+.+-+..-..+|.+.                                   ..+++-+.+++.|-.+|..++..
T Consensus       129 ~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~  205 (248)
T PF06977_consen  129 TNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVV  205 (248)
T ss_dssp             TTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EE
T ss_pred             CCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEE
Confidence            8877777766555555431                                   23566667777788888776643

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.91  E-value=0.28  Score=39.76  Aligned_cols=56  Identities=16%  Similarity=0.122  Sum_probs=43.2

Q ss_pred             EEEcCCCCEEEEE-----eCCCcEEEEeCC-CCceEEEeccCCccEEEEEEcCCCCEEEEee
Q psy16881        124 VRFNHKSSLLVSG-----SVDKTVKLWDVP-SLTCIKTLESHTRYVTCCTFSCDDSLLASGS  179 (222)
Q Consensus       124 l~~~~~~~~l~sg-----~~dg~I~iwd~~-~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s  179 (222)
                      ..|+++|++|++.     ...|.|-|||.. +.+.+.++..|---...+.+.|+|+.|+.+-
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN  117 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN  117 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence            4589999988886     346789999998 5677888877666666788899997776653

>KOG0882|consensus

Probab=95.82  E-value=0.11  Score=43.74  Aligned_cols=131  Identities=12%  Similarity=0.130  Sum_probs=83.5

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.|.++.+.|-++-.++....|-|..|..+. ...  +..   ..        +-+......               .
T Consensus       143 H~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~q--fPr---~~--------l~~~~K~eT---------------d  193 (558)
T KOG0882|consen  143 HFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQ--FPR---TN--------LNFELKHET---------------D  193 (558)
T ss_pred             ccCceEEEEeeccccceeeccccceeEeecCCC-ccc--Ccc---cc--------ccccccccc---------------h
Confidence            578899999999999888888889999997652 100  000   00        000000000               0


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc---------------------------
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES---------------------------  158 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~---------------------------  158 (222)
                      .     -.+.+.+....++.|+|+++.+.+-+.|..|++.++++++.++.+..                           
T Consensus       194 L-----y~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmave  268 (558)
T KOG0882|consen  194 L-----YGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVE  268 (558)
T ss_pred             h-----hcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHH
Confidence            0     01123456678899999999999999999999999998877654421                           


Q ss_pred             -----CCc-cEEEEEEcCCCCEEEEeeCCCeEEEEeCCC
Q psy16881        159 -----HTR-YVTCCTFSCDDSLLASGSNDKTVTIWDMLA  191 (222)
Q Consensus       159 -----~~~-~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~  191 (222)
                           |.. .-+-+.|+..|++|+-++-=| |++.++.+
T Consensus       269 relek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t  306 (558)
T KOG0882|consen  269 RELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT  306 (558)
T ss_pred             hhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec
Confidence                 111 013456777788888777665 77777754

>KOG2444|consensus

Probab=95.81  E-value=0.064  Score=41.26  Aligned_cols=62  Identities=18%  Similarity=0.283  Sum_probs=38.3

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCceEEEeccCC-ccEEEEEEcCCCCEEEEe--eCCCeEEEEeC
Q psy16881        128 HKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT-RYVTCCTFSCDDSLLASG--SNDKTVTIWDM  189 (222)
Q Consensus       128 ~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-~~V~~~~~s~~~~~l~s~--s~D~~i~lwd~  189 (222)
                      .++.+..++.+||.||.|+++-.+.+.....|+ ..+.....+..+..|+.+  |.|..++.|++
T Consensus       112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  112 RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             cccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence            345688999999999999998777666555565 333333333344444444  44445555544

>KOG2079|consensus

Probab=95.21  E-value=0.088  Score=48.83  Aligned_cols=70  Identities=31%  Similarity=0.545  Sum_probs=54.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEE---cCCCCEEEEeeCCCeEEEEeC
Q psy16881        118 TSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTF---SCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~---s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      +++|++++|+.+|..+..|-.+|.|.+||...++.++.+..|..+.+.+-+   ..++..+.++-..|.  +|.+
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            678999999999999999999999999999988888877666666555444   345556777666664  6654

>KOG4649|consensus

Probab=95.21  E-value=1  Score=35.76  Aligned_cols=60  Identities=18%  Similarity=0.143  Sum_probs=47.3

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEE-EEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        130 SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVT-CCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       130 ~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~-~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      |++++.|...|.+.+.+.+++.....+..-.. |. ....++++..|..|+.|+.....|.+
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~-vk~~a~~d~~~glIycgshd~~~yalD~~  123 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILET-VKVRAQCDFDGGLIYCGSHDGNFYALDPK  123 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhh-hccceEEcCCCceEEEecCCCcEEEeccc
Confidence            77899999999999999999977666654222 22 24457889999999999999988874

>KOG1008|consensus

Probab=95.02  E-value=0.0069  Score=52.84  Aligned_cols=93  Identities=25%  Similarity=0.438  Sum_probs=66.4

Q ss_pred             ccccCCCEEEEEEcCCC-CEEEEE----eCCCcEEEEeCCCC--ce--EEEecc-CCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881        114 VGRHTSAVTSVRFNHKS-SLLVSG----SVDKTVKLWDVPSL--TC--IKTLES-HTRYVTCCTFSCDDSLLASGSNDKT  183 (222)
Q Consensus       114 ~~~h~~~i~~l~~~~~~-~~l~sg----~~dg~I~iwd~~~~--~~--~~~~~~-~~~~V~~~~~s~~~~~l~s~s~D~~  183 (222)
                      ..+|...+++++|++-. +.++.|    ..|..++|||+.+.  .+  -..+.+ ......+++|..+.+++.+|...+.
T Consensus        98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~  177 (783)
T KOG1008|consen   98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRS  177 (783)
T ss_pred             cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccch
Confidence            44677889999998764 566666    34678999999865  11  112222 2233457888888899999999999


Q ss_pred             EEEEeCC-----------------------CCeEEEeeCCCcEEEEe
Q psy16881        184 VTIWDML-----------------------ATLLASGSNDKTVTIWD  207 (222)
Q Consensus       184 i~lwd~~-----------------------~~~l~s~~~d~~i~iwd  207 (222)
                      +.++|++                       ..++++ ..|+.|-+||
T Consensus       178 ~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs-~~dg~iAiwD  223 (783)
T KOG1008|consen  178 VHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS-NSDGDIAIWD  223 (783)
T ss_pred             hhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec-cccCceeecc
Confidence            9999985                       134444 4499999999

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.74  E-value=0.13  Score=28.65  Aligned_cols=31  Identities=29%  Similarity=0.558  Sum_probs=26.0

Q ss_pred             cceEEEEEcCCC---CeEEEecCCCeEEEEeCCC
Q psy16881         28 SNMRCVRFSPDT---RLLATGGDDETVTVWRSDD   58 (222)
Q Consensus        28 ~~v~~l~~spdg---~~l~tgs~Dg~i~iwd~~~   58 (222)
                      +.|+++.|||+.   ++|+-+-.-|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            358999999854   5899888999999999873

It contains a characteristic DLL sequence motif.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.71  E-value=0.95  Score=37.00  Aligned_cols=57  Identities=14%  Similarity=0.064  Sum_probs=41.8

Q ss_pred             EEEEEcCCCCEEEEEeCCC-cEEEEeCCCCceEEEeccCCccEEEEEEc-CCCCEEEEee
Q psy16881        122 TSVRFNHKSSLLVSGSVDK-TVKLWDVPSLTCIKTLESHTRYVTCCTFS-CDDSLLASGS  179 (222)
Q Consensus       122 ~~l~~~~~~~~l~sg~~dg-~I~iwd~~~~~~~~~~~~~~~~V~~~~~s-~~~~~l~s~s  179 (222)
                      -.++.+.+|++.+++..+| .|.+|+.. ++++..+......+++++|= ++.+.|+..+
T Consensus       216 DG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         216 DGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             CceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence            3466778888877666665 89999977 88888888776778888884 4555555444

>KOG2444|consensus

Probab=94.61  E-value=0.17  Score=38.98  Aligned_cols=81  Identities=19%  Similarity=0.147  Sum_probs=49.9

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEE-eccCCccEEEEEEc-CCCCEEEEeeCCCeEEEEeCC---------------CC
Q psy16881        130 SSLLVSGSVDKTVKLWDVPSLTCIKT-LESHTRYVTCCTFS-CDDSLLASGSNDKTVTIWDML---------------AT  192 (222)
Q Consensus       130 ~~~l~sg~~dg~I~iwd~~~~~~~~~-~~~~~~~V~~~~~s-~~~~~l~s~s~D~~i~lwd~~---------------~~  192 (222)
                      +..++.|+.+|.|.+|..+....... +..-...|.+..-. .++.+..++++|+.|+.|++.               ..
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            46789999999999998763211111 11112223332222 345577789999999999974               23


Q ss_pred             eEEEeeCCCcEEEEeCCC
Q psy16881        193 LLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       193 ~l~s~~~d~~i~iwd~~~  210 (222)
                      .+++.+.|+.|.+|+++.
T Consensus       150 ~~ivv~sd~~i~~a~~S~  167 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSH  167 (238)
T ss_pred             eeEEecCCceEEeecccc
Confidence            456666677777776653

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=94.43  E-value=2.7  Score=35.49  Aligned_cols=59  Identities=10%  Similarity=0.025  Sum_probs=36.1

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeccCC-ccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        130 SSLLVSGSVDKTVKLWDVPSLTCIKTLESHT-RYVTCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       130 ~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      ++.++.++.+|.+..+|.++++.+-....-. ....+..+  .+.+|+.++.||.+...|..
T Consensus       294 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~  353 (394)
T PRK11138        294 GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINRE  353 (394)
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECC
Confidence            5667777888888888988887654322111 11111111  25567777888888877763

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=94.31  E-value=3  Score=35.59  Aligned_cols=30  Identities=20%  Similarity=0.244  Sum_probs=23.8

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCC
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSD   57 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~   57 (222)
                      ++.+.++.|+.+.++| .-..||++++|++.
T Consensus        80 ~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~  109 (410)
T PF04841_consen   80 SGRIVGMGWTDDEELV-VVQSDGTVRVYDLF  109 (410)
T ss_pred             CCCEEEEEECCCCeEE-EEEcCCEEEEEeCC
Confidence            3778999998866655 44689999999985

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2114|consensus

Probab=94.08  E-value=2.5  Score=38.81  Aligned_cols=117  Identities=15%  Similarity=0.248  Sum_probs=76.5

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ..++++++.+.+-+.+|.|-.+|.|..+.   +...++-   +.                             ....   
T Consensus       125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~---GDi~RDr---gs-----------------------------r~~~---  166 (933)
T KOG2114|consen  125 PSPASSLAVSEDLKTIVCGFTNGLVICYK---GDILRDR---GS-----------------------------RQDY---  166 (933)
T ss_pred             CCcceEEEEEccccEEEEEecCcEEEEEc---Ccchhcc---cc-----------------------------ceee---
Confidence            56789999999999999999999999883   1111110   00                             0000   


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCce-EEEeccCCccEEEEEEcCCCCEEEEeeCCCeE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSL-LVSGSVDKTVKLWDVPSLTC-IKTLESHTRYVTCCTFSCDDSLLASGSNDKTV  184 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~-l~sg~~dg~I~iwd~~~~~~-~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i  184 (222)
                             ...-+.+|+.+.+..+++. ++.+. -..|.+|.+..... ...+..|-....|.++++....+++++.. .+
T Consensus       167 -------~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l  237 (933)
T KOG2114|consen  167 -------SHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FL  237 (933)
T ss_pred             -------eccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eE
Confidence                   0113678999999877764 33333 35788998874432 34455666678899998776657666644 57


Q ss_pred             EEEeCC
Q psy16881        185 TIWDML  190 (222)
Q Consensus       185 ~lwd~~  190 (222)
                      .+||..
T Consensus       238 ~fY~sd  243 (933)
T KOG2114|consen  238 YFYDSD  243 (933)
T ss_pred             EEEcCC
Confidence            888764

>KOG1920|consensus

Probab=94.08  E-value=1.5  Score=41.57  Aligned_cols=89  Identities=17%  Similarity=0.183  Sum_probs=50.9

Q ss_pred             CCEEEEEEcCCCCEEEE---EeCCCcEEEEeCCCCce-E-EEeccCCccEEEEEEcCCC-CEEEEeeCCCeEEEEeCCCC
Q psy16881        119 SAVTSVRFNHKSSLLVS---GSVDKTVKLWDVPSLTC-I-KTLESHTRYVTCCTFSCDD-SLLASGSNDKTVTIWDMLAT  192 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~s---g~~dg~I~iwd~~~~~~-~-~~~~~~~~~V~~~~~s~~~-~~l~s~s~D~~i~lwd~~~~  192 (222)
                      ..|+.++|+.++..++.   ......|++|-+.+-.- + ..+.-.....  +.|+|.. ..|..-..+|...++|+.-.
T Consensus       290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~~~  367 (1265)
T KOG1920|consen  290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFAWT  367 (1265)
T ss_pred             cchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEEEe
Confidence            34899999999988777   44444599998876422 1 1222222212  7788853 34444447888888887421


Q ss_pred             eEEEeeCCCcEEEEeCC
Q psy16881        193 LLASGSNDKTVTIWDMR  209 (222)
Q Consensus       193 ~l~s~~~d~~i~iwd~~  209 (222)
                      .-.+-..++++.+-|-+
T Consensus       368 t~~s~~d~S~~~VIDgs  384 (1265)
T KOG1920|consen  368 TDRSPNDGSTVYVIDGS  384 (1265)
T ss_pred             eeccCCCCceEEEEeCC
Confidence            11111223555565554

>PRK02888 nitrous-oxide reductase; Validated

Probab=93.92  E-value=2.4  Score=37.92  Aligned_cols=34  Identities=32%  Similarity=0.382  Sum_probs=26.2

Q ss_pred             ccceEEEEEcCCCCeEEEecC-CCeEEEEeCCCCc
Q psy16881         27 GSNMRCVRFSPDTRLLATGGD-DETVTVWRSDDLS   60 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~-Dg~i~iwd~~~~~   60 (222)
                      +.....++++|||+++++++. +++|.+.|+.+..
T Consensus       320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            444566899999998765554 9999999987643

>KOG2114|consensus

Probab=93.92  E-value=0.41  Score=43.57  Aligned_cols=58  Identities=19%  Similarity=0.359  Sum_probs=41.1

Q ss_pred             CEEEEEeCCC-----cEEEEeCCCC------ceEE--Eecc-----CCccEEEEEEcCCCCEEEEeeCCCeEEEEe
Q psy16881        131 SLLVSGSVDK-----TVKLWDVPSL------TCIK--TLES-----HTRYVTCCTFSCDDSLLASGSNDKTVTIWD  188 (222)
Q Consensus       131 ~~l~sg~~dg-----~I~iwd~~~~------~~~~--~~~~-----~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd  188 (222)
                      +++++.+.|+     .++|||++..      +++.  .+.+     ...++.+++.|.+-..+|+|-.+|.|..+.
T Consensus        78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~  153 (933)
T KOG2114|consen   78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK  153 (933)
T ss_pred             eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence            5666666654     4999998532      3331  1222     355688899999999999999999998884

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=93.84  E-value=3.1  Score=34.02  Aligned_cols=121  Identities=17%  Similarity=0.224  Sum_probs=70.9

Q ss_pred             eEEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc-eEEeeccCCCcceeeccceecCccCCcccceeeee
Q psy16881         17 ELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS-LIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF   95 (222)
Q Consensus        17 ~~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (222)
                      .+++.......+.|.+++-- +|+++++.  .++|.+|++.... ......                             
T Consensus        78 ~l~~i~~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~-----------------------------  125 (321)
T PF03178_consen   78 KLKLIHSTEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAF-----------------------------  125 (321)
T ss_dssp             EEEEEEEEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEE-----------------------------
T ss_pred             EEEEEEEEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhhe-----------------------------
Confidence            44554455567889888665 55544443  4899999886543 211100                             


Q ss_pred             eeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceEEEe--ccCCccEEEEEEcCCC
Q psy16881         96 VKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS-LTCIKTL--ESHTRYVTCCTFSCDD  172 (222)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~-~~~~~~~--~~~~~~V~~~~~s~~~  172 (222)
                                         -.....+.++...  +++++.|..-..+.++..+. ...+..+  ......++++.|-+++
T Consensus       126 -------------------~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~  184 (321)
T PF03178_consen  126 -------------------YDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE  184 (321)
T ss_dssp             -------------------E-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS
T ss_pred             -------------------ecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC
Confidence                               0012234555443  67899998888888774432 2222222  2235568888887666


Q ss_pred             CEEEEeeCCCeEEEEeCC
Q psy16881        173 SLLASGSNDKTVTIWDML  190 (222)
Q Consensus       173 ~~l~s~s~D~~i~lwd~~  190 (222)
                      +.++.+-.+|.+.++...
T Consensus       185 ~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  185 DTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             SEEEEEETTSEEEEEEE-
T ss_pred             cEEEEEcCCCeEEEEEEC
Confidence            788899999999888653

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1275|consensus

Probab=93.83  E-value=0.76  Score=42.33  Aligned_cols=147  Identities=14%  Similarity=0.204  Sum_probs=79.5

Q ss_pred             CCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCcc-CCcccc--eeeeeeee-eEeeeeeeeccCCc
Q psy16881         37 PDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPAC-PLCRTR--VFSTFVKQ-IIPTRVGVYGQDSE  112 (222)
Q Consensus        37 pdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~  112 (222)
                      .+++++.+|..-|+|.+-|+.+.+.+.++..  |... +..++..-.. ..|...  .+.-..+. +..++.... ....
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a--Hs~s-iSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~  260 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDA--HSGS-ISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALS  260 (1118)
T ss_pred             ecCcEEEeecccceEEeecCCcCceeeeeec--cccc-eeeeeccCCeEEEeecccccccccccchhhhhhhhhh-hccC
Confidence            4789999999999999999988777766532  2111 1111100000 000000  00000000 000110000 0000


Q ss_pred             cccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCC---CC-ceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEE
Q psy16881        113 TVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVP---SL-TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW  187 (222)
Q Consensus       113 ~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~---~~-~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lw  187 (222)
                      .+.-+.++ .-++|+|.- ..++.++..|...+-|..   +- .-+.-+......+..+.+|+.++.||.|-.+|.|.+|
T Consensus       261 PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~w  339 (1118)
T KOG1275|consen  261 PIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLW  339 (1118)
T ss_pred             CcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeee
Confidence            01111121 346777764 468888889999998842   22 1122333444558899999999999999999999999


Q ss_pred             e
Q psy16881        188 D  188 (222)
Q Consensus       188 d  188 (222)
                      -
T Consensus       340 a  340 (1118)
T KOG1275|consen  340 A  340 (1118)
T ss_pred             c
Confidence            6

>KOG2395|consensus

Probab=93.66  E-value=0.38  Score=41.59  Aligned_cols=80  Identities=16%  Similarity=0.207  Sum_probs=58.1

Q ss_pred             CCC-EEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCC--EE-----EEeeCCCeEEEEeCC----------
Q psy16881        129 KSS-LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS--LL-----ASGSNDKTVTIWDML----------  190 (222)
Q Consensus       129 ~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~--~l-----~s~s~D~~i~lwd~~----------  190 (222)
                      +.+ ++.++.....+.-.|+..++.+.++.-+.+ |+-+.+.|+..  .|     +.|-.|..|.-||.+          
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            344 345555666788889999999999988777 66666666531  22     235567788888874          


Q ss_pred             ------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        191 ------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       191 ------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                                        ..++|.||.+|.||+||..
T Consensus       423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri  459 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRI  459 (644)
T ss_pred             eccccccccccceeeecCCceEEEeecCCcEEeehhh
Confidence                              2479999999999999964

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.55  E-value=2.4  Score=36.40  Aligned_cols=143  Identities=17%  Similarity=0.118  Sum_probs=65.2

Q ss_pred             EEEEEcCCCCeEE-EecCCCeEEEE--eCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee-eeee
Q psy16881         31 RCVRFSPDTRLLA-TGGDDETVTVW--RSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT-RVGV  106 (222)
Q Consensus        31 ~~l~~spdg~~l~-tgs~Dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  106 (222)
                      ..-+|+|||+.|+ +...||...||  |+.......-.+..+...       .-...++....+|.......... ....
T Consensus       241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~-------~Ps~spdG~~ivf~Sdr~G~p~I~~~~~  313 (425)
T COG0823         241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINT-------SPSWSPDGSKIVFTSDRGGRPQIYLYDL  313 (425)
T ss_pred             CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCcccc-------CccCCCCCCEEEEEeCCCCCcceEEECC
Confidence            3457999999765 66678887766  444433221111111100       01223334444444333222211 1111


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeC-CCc--EEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCC
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV-DKT--VKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSND  181 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~-dg~--I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D  181 (222)
                      .+.....+......-..-.|+|+|++++..+. +|.  |.+.|+.++.....+. +......-++.++++.++..+..
T Consensus       314 ~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         314 EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             CCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccC
Confidence            11111111001111115678899997776664 344  6666766554333222 22223345567777777665543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=93.38  E-value=3  Score=35.20  Aligned_cols=57  Identities=14%  Similarity=0.074  Sum_probs=39.1

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEE-EEEcCCCCEEEEeeCCCeEEEEe
Q psy16881        130 SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTC-CTFSCDDSLLASGSNDKTVTIWD  188 (222)
Q Consensus       130 ~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~-~~~s~~~~~l~s~s~D~~i~lwd  188 (222)
                      +.+++.++.+|.|...|..+++.+.+.......+.+ -.+  .+..|+.++.||.+..++
T Consensus       335 ~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        335 NGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT  392 (394)
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence            567888999999999999999887766543322221 111  245677788888776654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.98  E-value=0.55  Score=39.05  Aligned_cols=70  Identities=13%  Similarity=0.177  Sum_probs=42.2

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE-EeccC-------C---------ccEEEEEEcCCCCEEEEee-C
Q psy16881        119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIK-TLESH-------T---------RYVTCCTFSCDDSLLASGS-N  180 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~-~~~~~-------~---------~~V~~~~~s~~~~~l~s~s-~  180 (222)
                      ..+....|+|+|+.++-.. ++.|.+++..+++..+ +..+.       .         ..-..+-|||++++|+... .
T Consensus        43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence            3456688999999888776 5789999887664432 11120       0         1124678999999999755 4


Q ss_pred             CCeEEEEeC
Q psy16881        181 DKTVTIWDM  189 (222)
Q Consensus       181 D~~i~lwd~  189 (222)
                      +..++.+.+
T Consensus       122 ~~~v~~~~~  130 (353)
T PF00930_consen  122 EREVPEYPL  130 (353)
T ss_dssp             -TTS-EEEE
T ss_pred             CcCCceEEe
Confidence            455666554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.84  E-value=1.2  Score=34.44  Aligned_cols=64  Identities=11%  Similarity=0.212  Sum_probs=48.0

Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCceEEEe-------c-------cCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        126 FNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL-------E-------SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       126 ~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~-------~-------~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      +...+++++.-+.+|.+.+||+++++++..-       .       .....|..+.++.+|.-|++-+ +|....|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            3456788999999999999999988765321       1       2445688888998888777765 4678888864

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=92.76  E-value=1  Score=41.44  Aligned_cols=73  Identities=15%  Similarity=0.142  Sum_probs=52.8

Q ss_pred             eCCCcEEEEeCCCCceEEEeccCCcc-EEEEEEcC-----CCCEEEEeeCCCeEEEEeCC--------------------
Q psy16881        137 SVDKTVKLWDVPSLTCIKTLESHTRY-VTCCTFSC-----DDSLLASGSNDKTVTIWDML--------------------  190 (222)
Q Consensus       137 ~~dg~I~iwd~~~~~~~~~~~~~~~~-V~~~~~s~-----~~~~l~s~s~D~~i~lwd~~--------------------  190 (222)
                      ...+.|.-.|++.++.+.++..|... |..++-+.     ....-+.|-.+..+..||.+                    
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            44577888899999999999887764 54444221     12334456667778888874                    


Q ss_pred             -------CCeEEEeeCCCcEEEEeCC
Q psy16881        191 -------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       191 -------~~~l~s~~~d~~i~iwd~~  209 (222)
                             ...+|.|+.+|.|||||--
T Consensus       581 s~~aTt~~G~iavgs~~G~IRLyd~~  606 (794)
T PF08553_consen  581 SCFATTEDGYIAVGSNKGDIRLYDRL  606 (794)
T ss_pred             eEEEecCCceEEEEeCCCcEEeeccc
Confidence                   2479999999999999943

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2079|consensus

Probab=92.73  E-value=0.48  Score=44.25  Aligned_cols=42  Identities=26%  Similarity=0.410  Sum_probs=35.5

Q ss_pred             eeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEee
Q psy16881         24 VHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMET   65 (222)
Q Consensus        24 ~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~   65 (222)
                      .+-++.|.+++|+.+|++++.|-.+|.|.+||+.........
T Consensus       127 e~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i  168 (1206)
T KOG2079|consen  127 ERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI  168 (1206)
T ss_pred             CccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence            345788999999999999999999999999999876555443

>KOG3621|consensus

Probab=92.54  E-value=0.81  Score=40.81  Aligned_cols=93  Identities=19%  Similarity=0.233  Sum_probs=66.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE-EeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC------
Q psy16881        118 TSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIK-TLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML------  190 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~-~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~------  190 (222)
                      ...|..-+++..+++++.|+.-|.+.+|+-..++... +..+....+...++|+...++|.|++.|.|.++-+.      
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            4444545566778999999999999999876654432 233344455667788888999999999999998652      


Q ss_pred             -----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        191 -----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       191 -----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                                             ...+.+|...|+|.+-.+..
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                                   34577777777777776654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.39  E-value=6.1  Score=33.45  Aligned_cols=33  Identities=24%  Similarity=0.335  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCeEEEe-cCC----CeEEEEeCCCCceE
Q psy16881         30 MRCVRFSPDTRLLATG-GDD----ETVTVWRSDDLSLI   62 (222)
Q Consensus        30 v~~l~~spdg~~l~tg-s~D----g~i~iwd~~~~~~~   62 (222)
                      +...++||||++||-+ +..    .+|+++|++++..+
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l  163 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL  163 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc
Confidence            3457899999988744 223    45899999877544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=92.11  E-value=2.3  Score=38.10  Aligned_cols=26  Identities=15%  Similarity=-0.041  Sum_probs=20.0

Q ss_pred             CccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881        160 TRYVTCCTFSCDDSLLASGSNDKTVTI  186 (222)
Q Consensus       160 ~~~V~~~~~s~~~~~l~s~s~D~~i~l  186 (222)
                      ...|..+.|||||..|+... +++|.+
T Consensus       447 ~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        447 PGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             CCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            34699999999999888766 456655

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=91.11  E-value=8.5  Score=32.47  Aligned_cols=69  Identities=16%  Similarity=0.188  Sum_probs=51.7

Q ss_pred             EEEEEcCCCCEEEEEeC---CCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE-eeCCCeEEEEeCCC
Q psy16881        122 TSVRFNHKSSLLVSGSV---DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS-GSNDKTVTIWDMLA  191 (222)
Q Consensus       122 ~~l~~~~~~~~l~sg~~---dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s-~s~D~~i~lwd~~~  191 (222)
                      ..++++++++.++.+..   ++.+.+.|..+.+...+......+ ..++++|+|..++. -..++.+.+.|...
T Consensus       119 ~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~  191 (381)
T COG3391         119 VGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG  191 (381)
T ss_pred             ceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC
Confidence            45788999987777765   688889998888877765544444 78999999996665 44778898888643

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=90.98  E-value=11  Score=33.54  Aligned_cols=30  Identities=20%  Similarity=0.366  Sum_probs=21.3

Q ss_pred             cceEEEEEcCCC----CeEEEecCCCeEEEEeCC
Q psy16881         28 SNMRCVRFSPDT----RLLATGGDDETVTVWRSD   57 (222)
Q Consensus        28 ~~v~~l~~spdg----~~l~tgs~Dg~i~iwd~~   57 (222)
                      +-|..+.|.|-+    ..|++...-+.|.+|-+.
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            447778998853    245556778899999764

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.94  E-value=3.8  Score=33.03  Aligned_cols=55  Identities=15%  Similarity=0.152  Sum_probs=42.9

Q ss_pred             EEcCCCCEEEEEeC-----CCcEEEEeCCCC-ceEEEeccCCccEEEEEEcCCCCEEEEee
Q psy16881        125 RFNHKSSLLVSGSV-----DKTVKLWDVPSL-TCIKTLESHTRYVTCCTFSCDDSLLASGS  179 (222)
Q Consensus       125 ~~~~~~~~l~sg~~-----dg~I~iwd~~~~-~~~~~~~~~~~~V~~~~~s~~~~~l~s~s  179 (222)
                      .|+++|.+|+..-.     -|.|-|||.+.+ +.+.++..|---...+.+.+||+.|+.+.
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            48999998887643     467999998743 55778887777777899999999998764

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.81  E-value=7.3  Score=35.83  Aligned_cols=102  Identities=23%  Similarity=0.205  Sum_probs=57.2

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ   98 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (222)
                      ++....+..=.|..|.++|+|++||..|..|..-+.-....-....+     ..+        .....|+         .
T Consensus        76 ~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~-----~~g--------~~~i~Cr---------t  133 (717)
T PF10168_consen   76 KLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEF-----EDG--------KKEINCR---------T  133 (717)
T ss_pred             eeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccc-----cCC--------CcceeEE---------E
Confidence            44444445567888999999999998887776655432211000000     000        0000000         0


Q ss_pred             eEeeeeeeeccCCccccccCCCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCC
Q psy16881         99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKS---SLLVSGSVDKTVKLWDVPS  149 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~---~~l~sg~~dg~I~iwd~~~  149 (222)
                      +   .++   .... ...+...|..+.|+|.+   ..++.=..|+++|+||+..
T Consensus       134 ~---~v~---~~~~-~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  134 V---PVD---ERFF-TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             E---Eec---hhhc-cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence            0   000   0000 11245678899999874   6788888899999999964

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=89.94  E-value=10  Score=32.38  Aligned_cols=99  Identities=7%  Similarity=0.016  Sum_probs=57.6

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccC-CccEEEEEEcCCCCEEE-------EeeCCCeEEEEeCC
Q psy16881        119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESH-TRYVTCCTFSCDDSLLA-------SGSNDKTVTIWDML  190 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~-~~~V~~~~~s~~~~~l~-------s~s~D~~i~lwd~~  190 (222)
                      +++..+++||++++++.-..+|.+.|.+..-.+...++... ......+.|.-+...++       -.+.++.-.-|...
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~~~~l~lvg~~~~~~~~~~~  296 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSWEDELLLVGPDGDSISFWYD  296 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEeCCEEEEECCCCCceEEecc
Confidence            57899999999999999999999998875444444444433 23445666654432222       11222222222223


Q ss_pred             CCeEEEeeCCCcEEEEeCC-CCccccCCC
Q psy16881        191 ATLLASGSNDKTVTIWDMR-GNLSVDVPL  218 (222)
Q Consensus       191 ~~~l~s~~~d~~i~iwd~~-~~~~~~~~~  218 (222)
                      .......-.|| +||..-. -++..++|.
T Consensus       297 ~~~~l~~E~DG-~riit~~~~~~l~~Vp~  324 (410)
T PF04841_consen  297 GPVILVSEIDG-VRIITSTSHEFLQRVPD  324 (410)
T ss_pred             CceEEeccCCc-eEEEeCCceEEEEECCH
Confidence            33344444454 8888776 445666663

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3617|consensus

Probab=89.91  E-value=0.37  Score=44.09  Aligned_cols=36  Identities=19%  Similarity=0.468  Sum_probs=32.6

Q ss_pred             cccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy16881        113 TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP  148 (222)
Q Consensus       113 ~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~  148 (222)
                      +...|+.+|..+.|+++|+.+.++..-|.+.+|.+.
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            445699999999999999999999999999999875

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=89.79  E-value=2  Score=23.11  Aligned_cols=32  Identities=19%  Similarity=0.153  Sum_probs=23.0

Q ss_pred             CCCCEEEEEe-CCCcEEEEeCCCCceEEEeccC
Q psy16881        128 HKSSLLVSGS-VDKTVKLWDVPSLTCIKTLESH  159 (222)
Q Consensus       128 ~~~~~l~sg~-~dg~I~iwd~~~~~~~~~~~~~  159 (222)
                      |+++.++.+. .++.|.++|..+.+.+..+...
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence            4566555544 5789999999888887776653

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.70  E-value=9.6  Score=30.87  Aligned_cols=39  Identities=23%  Similarity=0.297  Sum_probs=30.9

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMET   65 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~   65 (222)
                      .+.|+.+.|+|+.+.|++..+...-.++--.++..+...
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti  123 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI  123 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe
Confidence            566999999999999888877777778866667666654

>KOG2395|consensus

Probab=88.66  E-value=7.1  Score=34.17  Aligned_cols=66  Identities=14%  Similarity=0.200  Sum_probs=46.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE-EEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881        121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCI-KTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~-~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      ..|.+-. ...+++.|+.+|.||+||- .+... ..+.+--++|.-+..+.+|..|+..+.. .+.|.|.
T Consensus       433 Fsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t-yLlLi~t  499 (644)
T KOG2395|consen  433 FSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT-YLLLIDT  499 (644)
T ss_pred             cceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc-EEEEEEE
Confidence            3444433 2358999999999999996 33322 2345556789999999999998877655 5666664

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=88.33  E-value=3  Score=23.25  Aligned_cols=31  Identities=26%  Similarity=0.335  Sum_probs=25.0

Q ss_pred             CCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCC
Q psy16881        119 SAVTSVRFNHKS---SLLVSGSVDKTVKLWDVPS  149 (222)
Q Consensus       119 ~~i~~l~~~~~~---~~l~sg~~dg~I~iwd~~~  149 (222)
                      +.|.++.|+|..   ..|+-+-.-|.|-|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            357899999754   4788877788999999985

It contains a characteristic DLL sequence motif.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.28  E-value=4.8  Score=36.73  Aligned_cols=72  Identities=13%  Similarity=0.153  Sum_probs=47.8

Q ss_pred             CCCEEEEEEc--CCCCEEEEEeCCCcEEEEeCCC--Cc-eEEEeccCCccEEEEEEcCC-----CC-EEEEeeCCCeEEE
Q psy16881        118 TSAVTSVRFN--HKSSLLVSGSVDKTVKLWDVPS--LT-CIKTLESHTRYVTCCTFSCD-----DS-LLASGSNDKTVTI  186 (222)
Q Consensus       118 ~~~i~~l~~~--~~~~~l~sg~~dg~I~iwd~~~--~~-~~~~~~~~~~~V~~~~~s~~-----~~-~l~s~s~D~~i~l  186 (222)
                      ...+++++++  ...+++|.++....|.|+=+..  .+ ....-..+...|.+++|-++     |. .|++++-.|.+-+
T Consensus       163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~  242 (717)
T PF08728_consen  163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT  242 (717)
T ss_pred             CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence            4467888888  6667888888878888874321  11 11111125567899999653     22 6777888888888


Q ss_pred             EeC
Q psy16881        187 WDM  189 (222)
Q Consensus       187 wd~  189 (222)
                      |++
T Consensus       243 ~~I  245 (717)
T PF08728_consen  243 FKI  245 (717)
T ss_pred             EEE
Confidence            887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=88.27  E-value=11  Score=29.77  Aligned_cols=69  Identities=13%  Similarity=0.019  Sum_probs=40.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCCce-EEEeccC--CccEEEEEEcCCCCEEEEee---CCCeEEEEe
Q psy16881        120 AVTSVRFNHKSSLLVSGSVDKTVKLWD-VPSLTC-IKTLESH--TRYVTCCTFSCDDSLLASGS---NDKTVTIWD  188 (222)
Q Consensus       120 ~i~~l~~~~~~~~l~sg~~dg~I~iwd-~~~~~~-~~~~~~~--~~~V~~~~~s~~~~~l~s~s---~D~~i~lwd  188 (222)
                      .+..-+|++++...+....+...+++. ..++.. ...+...  ...|.++.+||||..++...   .++.+.+--
T Consensus        67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~  142 (253)
T PF10647_consen   67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAG  142 (253)
T ss_pred             ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEE
Confidence            344556777777666666666666663 222222 1122111  11799999999999888766   345666553

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=88.22  E-value=20  Score=32.51  Aligned_cols=70  Identities=14%  Similarity=0.268  Sum_probs=43.3

Q ss_pred             CCCEEEEEEc--CCCCEEEEEeCCCcEEEEeC-----C----CCceEEEe--ccCC-ccEEEEEEcCCCCEEEEeeCCCe
Q psy16881        118 TSAVTSVRFN--HKSSLLVSGSVDKTVKLWDV-----P----SLTCIKTL--ESHT-RYVTCCTFSCDDSLLASGSNDKT  183 (222)
Q Consensus       118 ~~~i~~l~~~--~~~~~l~sg~~dg~I~iwd~-----~----~~~~~~~~--~~~~-~~V~~~~~s~~~~~l~s~s~D~~  183 (222)
                      .+.|..+.|.  |+++.+++.+..+.|.+|--     .    +...+.++  ..++ .+|.+..|.++|..++.++  ..
T Consensus        72 ~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nq  149 (631)
T PF12234_consen   72 DDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQ  149 (631)
T ss_pred             CCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CE
Confidence            4556667663  66777777777788887732     1    11223322  2333 5688999999987776443  46


Q ss_pred             EEEEeC
Q psy16881        184 VTIWDM  189 (222)
Q Consensus       184 i~lwd~  189 (222)
                      +.++|-
T Consensus       150 lfv~dk  155 (631)
T PF12234_consen  150 LFVFDK  155 (631)
T ss_pred             EEEECC
Confidence            777763

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=88.08  E-value=16  Score=31.40  Aligned_cols=66  Identities=15%  Similarity=0.098  Sum_probs=36.9

Q ss_pred             EEEEcCCCCEEEEE-eCCCc--EEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeC-CCe--EEEEeC
Q psy16881        123 SVRFNHKSSLLVSG-SVDKT--VKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN-DKT--VTIWDM  189 (222)
Q Consensus       123 ~l~~~~~~~~l~sg-~~dg~--I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~-D~~--i~lwd~  189 (222)
                      .-.|+|+|+.++-. +..|.  |-++|...... ..+......-..-.++|+|++|+..+. +|.  |.+.|+
T Consensus       286 ~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~  357 (425)
T COG0823         286 SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDL  357 (425)
T ss_pred             CccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence            45689999865544 44554  55556654433 222221111125678999999987663 233  555544

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=87.67  E-value=11  Score=32.03  Aligned_cols=32  Identities=22%  Similarity=0.234  Sum_probs=24.3

Q ss_pred             cCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        158 SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       158 ~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      ....+|++++.| +-..+|.|.++|.+.|.|++
T Consensus        84 ~~~g~vtal~~S-~iGFvaigy~~G~l~viD~R  115 (395)
T PF08596_consen   84 AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLR  115 (395)
T ss_dssp             --S-SEEEEEE--BTSEEEEEETTSEEEEEETT
T ss_pred             ccCCcEeEEecC-CCcEEEEEecCCcEEEEECC
Confidence            345678888887 66789999999999999986

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=87.66  E-value=1.6  Score=38.60  Aligned_cols=36  Identities=22%  Similarity=0.540  Sum_probs=27.6

Q ss_pred             EEEEEEcC----CCCEEEEEeCCCcEEEEeCCCCceEEEe
Q psy16881        121 VTSVRFNH----KSSLLVSGSVDKTVKLWDVPSLTCIKTL  156 (222)
Q Consensus       121 i~~l~~~~----~~~~l~sg~~dg~I~iwd~~~~~~~~~~  156 (222)
                      +..++++.    ...++++-+.|+++|+||+++++++.+.
T Consensus       217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            44455554    5679999999999999999999996654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=87.33  E-value=12  Score=30.70  Aligned_cols=70  Identities=13%  Similarity=0.131  Sum_probs=40.4

Q ss_pred             CEEEEEEcCCCCEEEEEeC---------CCcEEEEeCC-CCceEEEeccCCccEEEEEEcCCCCEEEEeeC-CCeEEEEe
Q psy16881        120 AVTSVRFNHKSSLLVSGSV---------DKTVKLWDVP-SLTCIKTLESHTRYVTCCTFSCDDSLLASGSN-DKTVTIWD  188 (222)
Q Consensus       120 ~i~~l~~~~~~~~l~sg~~---------dg~I~iwd~~-~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~-D~~i~lwd  188 (222)
                      ..+.+...++|.+.++.-.         -..=++|-+. .+..+..+..+-..-+.++|||+++.|+.+-. .+.|.-|+
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~  191 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD  191 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence            3456667788876555433         0111344444 45555545444444467999999987776544 35666665


Q ss_pred             C
Q psy16881        189 M  189 (222)
Q Consensus       189 ~  189 (222)
                      +
T Consensus       192 ~  192 (307)
T COG3386         192 L  192 (307)
T ss_pred             c
Confidence            4

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.19  E-value=14  Score=32.03  Aligned_cols=51  Identities=12%  Similarity=0.146  Sum_probs=27.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----------ceEEEeccCCccEEEEEEcCC
Q psy16881        120 AVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL-----------TCIKTLESHTRYVTCCTFSCD  171 (222)
Q Consensus       120 ~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~-----------~~~~~~~~~~~~V~~~~~s~~  171 (222)
                      +|..+.|++++.+++..+.+ .+.|++.+..           ..+..+..-...|.+..|.-+
T Consensus       146 ~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  146 AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED  207 (443)
T ss_dssp             E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred             CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence            37899999999999988865 6667765432           012222211345777788755

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.11  E-value=25  Score=32.49  Aligned_cols=71  Identities=20%  Similarity=0.225  Sum_probs=48.8

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEeCC----------CCce---EEEe--------ccCCccEEEEEEcCC---CCE
Q psy16881        119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVP----------SLTC---IKTL--------ESHTRYVTCCTFSCD---DSL  174 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~----------~~~~---~~~~--------~~~~~~V~~~~~s~~---~~~  174 (222)
                      -.|..|.+++.|..++..+..|.+ |-.+.          .++.   ..++        ..+...|..+.|+|.   +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            357889999999988888876554 33332          1111   1111        133456888999986   478


Q ss_pred             EEEeeCCCeEEEEeCC
Q psy16881        175 LASGSNDKTVTIWDML  190 (222)
Q Consensus       175 l~s~s~D~~i~lwd~~  190 (222)
                      |+.=+.|+++++||+.
T Consensus       164 l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDIS  179 (717)
T ss_pred             EEEEecCCEEEEEecC
Confidence            8888899999999985

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=87.01  E-value=14  Score=31.60  Aligned_cols=39  Identities=15%  Similarity=0.044  Sum_probs=31.8

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMET   65 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~   65 (222)
                      .-.+.+|+.+|++++.|+...=|.|.++|+.++..++.+
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW  345 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW  345 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh
Confidence            344778999999999999988999999999877665443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=86.12  E-value=13  Score=30.31  Aligned_cols=71  Identities=14%  Similarity=0.187  Sum_probs=41.8

Q ss_pred             cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEe
Q psy16881        117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD  188 (222)
Q Consensus       117 h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd  188 (222)
                      -...+..+...++|++++.+..-+...-||--...-...-......|..+.|++++.+.+.+ ..|.|+.-+
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~  213 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD  213 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence            34668888888999988888766666678754322222222346789999999998887755 788888876

>KOG4460|consensus

Probab=85.60  E-value=17  Score=32.06  Aligned_cols=32  Identities=16%  Similarity=0.308  Sum_probs=24.6

Q ss_pred             CEEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCc
Q psy16881        120 AVTSVRFNHKS---SLLVSGSVDKTVKLWDVPSLT  151 (222)
Q Consensus       120 ~i~~l~~~~~~---~~l~sg~~dg~I~iwd~~~~~  151 (222)
                      .+..++|+|+.   ..+..-+.|+.||+||+....
T Consensus       167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             eeeeccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence            45678898876   467777889999999987543

>KOG4499|consensus

Probab=85.49  E-value=4.1  Score=31.94  Aligned_cols=46  Identities=20%  Similarity=0.258  Sum_probs=39.5

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEc
Q psy16881        124 VRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS  169 (222)
Q Consensus       124 l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s  169 (222)
                      .+++.+|+..++.-..++|...|..+++.+.++.-....|+|++|-
T Consensus       217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            3446678887877778899999999999999999889999999995

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=85.03  E-value=22  Score=30.52  Aligned_cols=43  Identities=14%  Similarity=0.054  Sum_probs=36.2

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCc
Q psy16881        119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTR  161 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~  161 (222)
                      -.+.++..+|.+++.+....=|-|.++|+.++..+.-++|..+
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd  350 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD  350 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence            4478899999999888887788899999999888888887655

>KOG4649|consensus

Probab=84.78  E-value=19  Score=28.88  Aligned_cols=33  Identities=18%  Similarity=0.318  Sum_probs=28.3

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec
Q psy16881        125 RFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE  157 (222)
Q Consensus       125 ~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~  157 (222)
                      ...+++..++.|+.|++....|.++..++.+.+
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence            456788999999999999999999988887654

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=84.23  E-value=2.9  Score=37.02  Aligned_cols=38  Identities=21%  Similarity=0.280  Sum_probs=27.9

Q ss_pred             cceEEEEEcC----CCCeEEEecCCCeEEEEeCCCCceEEee
Q psy16881         28 SNMRCVRFSP----DTRLLATGGDDETVTVWRSDDLSLIMET   65 (222)
Q Consensus        28 ~~v~~l~~sp----dg~~l~tgs~Dg~i~iwd~~~~~~~~~~   65 (222)
                      +.+..+++++    +..+|++-+.|++||+|++.++.++.+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            3345556666    6779999999999999999999886554

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2377|consensus

Probab=83.67  E-value=7.6  Score=33.48  Aligned_cols=30  Identities=23%  Similarity=0.418  Sum_probs=27.6

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeC
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRS   56 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~   56 (222)
                      .+.|+++.||+|.+.||+--.|.+|.++..
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf   95 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNF   95 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCceEEEEec
Confidence            457999999999999999999999999976

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=83.48  E-value=11  Score=33.92  Aligned_cols=61  Identities=13%  Similarity=0.122  Sum_probs=42.5

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCceEEEec-cCCccEEEEEEc--CCCCEEEEeeCCCeEEEEe
Q psy16881        128 HKSSLLVSGSVDKTVKLWDVPSLTCIKTLE-SHTRYVTCCTFS--CDDSLLASGSNDKTVTIWD  188 (222)
Q Consensus       128 ~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~~~~V~~~~~s--~~~~~l~s~s~D~~i~lwd  188 (222)
                      ..++..+.-+....+.|||.+.+....+-. ...+.|..+.|.  |+++.+.+.+....|.+|.
T Consensus        39 s~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   39 SIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             ccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence            334433333444569999999876543322 346678888885  7899999999999999985

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=81.71  E-value=6  Score=20.95  Aligned_cols=29  Identities=14%  Similarity=0.086  Sum_probs=18.2

Q ss_pred             CCccEEEEEEcCCCCEEEEee-CC--CeEEEE
Q psy16881        159 HTRYVTCCTFSCDDSLLASGS-ND--KTVTIW  187 (222)
Q Consensus       159 ~~~~V~~~~~s~~~~~l~s~s-~D--~~i~lw  187 (222)
                      .......-.|||+|+.|+-.+ .+  |...||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            334566788999999888655 33  454444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=80.57  E-value=17  Score=28.09  Aligned_cols=84  Identities=14%  Similarity=0.188  Sum_probs=49.8

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ++.+..+  ..++++|++-..+|.+++||+.+.+.+...               ++..+...         .      ..
T Consensus        12 gs~~~~l--~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~---------------~Si~pll~---------~------~~   59 (219)
T PF07569_consen   12 GSPVSFL--ECNGSYLLAITSSGLLYVWNLKKGKAVLPP---------------VSIAPLLN---------S------SP   59 (219)
T ss_pred             CCceEEE--EeCCCEEEEEeCCCeEEEEECCCCeeccCC---------------ccHHHHhc---------c------cc
Confidence            4445544  457888888889999999999876654321               00000000         0      00


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP  148 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~  148 (222)
                       . . ..  .....|..+.++.+|.-+++-+ +|....||..
T Consensus        60 -~-~-~~--~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   60 -V-S-DK--SSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             -c-c-cC--CCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence             0 0 00  2356678888888887666655 4778888765

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1900|consensus

Probab=80.56  E-value=41  Score=32.89  Aligned_cols=72  Identities=15%  Similarity=0.301  Sum_probs=49.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEE--EEeCCCC---c-e----------------EEEec-cCCccEEEEEEcCCCCE
Q psy16881        118 TSAVTSVRFNHKSSLLVSGSVDKTVK--LWDVPSL---T-C----------------IKTLE-SHTRYVTCCTFSCDDSL  174 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~sg~~dg~I~--iwd~~~~---~-~----------------~~~~~-~~~~~V~~~~~s~~~~~  174 (222)
                      ...|+++....+|+.|++|- ||.|.  +|...++   + |                +.++. .+.++|..++.+..-.+
T Consensus       178 g~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~I  256 (1311)
T KOG1900|consen  178 GVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNI  256 (1311)
T ss_pred             CceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccce
Confidence            45688888777788777665 45332  2222221   1 1                01122 45678999999988899


Q ss_pred             EEEeeCCCeEEEEeCC
Q psy16881        175 LASGSNDKTVTIWDML  190 (222)
Q Consensus       175 l~s~s~D~~i~lwd~~  190 (222)
                      +++-+..++|..||+.
T Consensus       257 lY~lsek~~v~~Y~i~  272 (1311)
T KOG1900|consen  257 LYVLSEKGTVSAYDIG  272 (1311)
T ss_pred             eeeeccCceEEEEEcc
Confidence            9999999999999984

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=80.14  E-value=32  Score=28.37  Aligned_cols=26  Identities=35%  Similarity=0.452  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEEe
Q psy16881         29 NMRCVRFSPDTRLLATGGDDETVTVWR   55 (222)
Q Consensus        29 ~v~~l~~spdg~~l~tgs~Dg~i~iwd   55 (222)
                      ..+.++|.|||+++++ ...|+|++++
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~   28 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD   28 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe
Confidence            3577999999987765 5699999998

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	222
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		8e-16
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-10
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-15
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-15
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-15
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-15
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-15
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-15
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-15
2h9l_A	329	Wdr5delta23 Length = 329		2e-15
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-15
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-15
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-15
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-15
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-15
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-15
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-15
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-15
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-15
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-12
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		8e-08
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-11
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-07
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-10
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		7e-09
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-10
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-09
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-09
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		4e-09
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-08
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-08
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		7e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		5e-08
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		6e-08
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		9e-08
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		7e-06
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-07
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-04
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-05
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-07
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-05
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-07
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-05
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-07
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		3e-07
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		3e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-07
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		3e-07
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-07
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		4e-07
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-06
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		8e-05
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-06
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		7e-06
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		7e-06
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		8e-06
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		8e-06
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		8e-06
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-05
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-05
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-05
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		1e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-05
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		3e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-05
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		1e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		2e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 108/224 (48%), Gaps = 34/224 (15%)
Query: 12  LFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHT 71
           L+N    +L+      S++  V FSPD + +A+  DD+TV +W  +   L   T   GH+
Sbjct: 288 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLT---GHS 344
Query: 72  QGRIEGWGRVPACPLCRTRVFSTFVKQI-IPTRVGVYGQDSETVGRHTSAVTSVRFNHKS 130
                 WG V   P  +T   ++  K + +  R    GQ  +T+  H+S+V  V F+   
Sbjct: 345 SSV---WG-VAFSPDGQTIASASDDKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDG 397
Query: 131 SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD-- 188
             + S S DKTVKLW+      ++TL  H+  V    FS DD  +AS S+DKTV +W+  
Sbjct: 398 QTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN 456
Query: 189 --MLATL------------------LASGSNDKTVTIWDMRGNL 212
             +L TL                  +AS S+DKTV +W+  G L
Sbjct: 457 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 500

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 23/118 (19%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
           H+S+V  V F+     + S S DKTVKLW+      ++TL  H+  V    FS D   +A
Sbjct: 15  HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIA 73
Query: 177 SGSNDKTVTIWD----MLATL------------------LASGSNDKTVTIWDMRGNL 212
           S S+DKTV +W+    +L TL                  +AS S+DKTV +W+  G L
Sbjct: 74  SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 131

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
           G Y G+  +T+  H   ++ V ++  S+LLVS S DKT+K+WDV S  C+KTL+ H+ YV
Sbjct: 54  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
            CC F+   +L+ SGS D++V IWD+
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDV 139

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
           G Y G+  +T+  H   ++ V ++  S+LLVS S DKT+K+WDV S  C+KTL+ H+ YV
Sbjct: 54  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
            CC F+   +L+ SGS D++V IWD+
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDV 139

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
           G Y G+  +T+  H   ++ V ++  S+LLVS S DKT+K+WDV S  C+KTL+ H+ YV
Sbjct: 54  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
            CC F+   +L+ SGS D++V IWD+
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDV 139

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 23/135 (17%)
Query: 98  QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE 157
           Q  PT V        T+  HT AV+SV+F+     L S S DK +K+W        KT+ 
Sbjct: 9   QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 68
Query: 158 SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM-----------------------LATLL 194
            H   ++   +S D +LL S S+DKT+ IWD+                        + L+
Sbjct: 69  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 195 ASGSNDKTVTIWDMR 209
            SGS D++V IWD++
Sbjct: 129 VSGSFDESVRIWDVK 143

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 23/140 (16%)
Query: 93  STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC 152
           S+   Q  PT V        T+  HT AV+SV+F+     L S S DK +K+W       
Sbjct: 22  SSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 81
Query: 153 IKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM----------------------- 189
            KT+  H   ++   +S D +LL S S+DKT+ IWD+                       
Sbjct: 82  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 141
Query: 190 LATLLASGSNDKTVTIWDMR 209
            + L+ SGS D++V IWD++
Sbjct: 142 QSNLIVSGSFDESVRIWDVK 161

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 23/140 (16%)
Query: 93  STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC 152
           S+   Q  PT V        T+  HT AV+SV+F+     L S S DK +K+W       
Sbjct: 20  SSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 79
Query: 153 IKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM----------------------- 189
            KT+  H   ++   +S D +LL S S+DKT+ IWD+                       
Sbjct: 80  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 139
Query: 190 LATLLASGSNDKTVTIWDMR 209
            + L+ SGS D++V IWD++
Sbjct: 140 QSNLIVSGSFDESVRIWDVK 159

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 23/135 (17%)
Query: 98  QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE 157
           Q  PT V        T+  HT AV+SV+F+     L S S DK +K+W        KT+ 
Sbjct: 9   QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 68
Query: 158 SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM-----------------------LATLL 194
            H   ++   +S D +LL S S+DKT+ IWD+                        + L+
Sbjct: 69  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 195 ASGSNDKTVTIWDMR 209
            SGS D++V IWD++
Sbjct: 129 VSGSFDESVRIWDVK 143

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 23/135 (17%)
Query: 98  QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE 157
           Q  PT V        T+  HT AV+SV+F+     L S S DK +K+W        KT+ 
Sbjct: 20  QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 79
Query: 158 SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM-----------------------LATLL 194
            H   ++   +S D +LL S S+DKT+ IWD+                        + L+
Sbjct: 80  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 139
Query: 195 ASGSNDKTVTIWDMR 209
            SGS D++V IWD++
Sbjct: 140 VSGSFDESVRIWDVK 154

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 23/135 (17%)
Query: 98  QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE 157
           Q  PT V        T+  HT AV+SV+F+     L S S DK +K+W        KT+ 
Sbjct: 8   QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 67
Query: 158 SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM-----------------------LATLL 194
            H   ++   +S D +LL S S+DKT+ IWD+                        + L+
Sbjct: 68  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 127
Query: 195 ASGSNDKTVTIWDMR 209
            SGS D++V IWD++
Sbjct: 128 VSGSFDESVRIWDVK 142

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 23/135 (17%)
Query: 98  QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE 157
           Q  PT V        T+  HT AV+SV+F+     L S S DK +K+W        KT+ 
Sbjct: 9   QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 68
Query: 158 SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM-----------------------LATLL 194
            H   ++   +S D +LL S S+DKT+ IWD+                        + L+
Sbjct: 69  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 195 ASGSNDKTVTIWDMR 209
            SGS D++V IWD++
Sbjct: 129 VSGSFDESVRIWDVK 143

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
           G Y G+  +T+  H   ++ V ++  S+LLVS S DKT+K+WDV S  C+KTL+ H+ YV
Sbjct: 47  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 106
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
            CC F+   +L+ SGS D++V IWD+
Sbjct: 107 FCCNFNPQSNLIVSGSFDESVRIWDV 132

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
           G Y G+  +T+  H   ++ V ++  S+LLVS S DKT+K+WDV S  C+KTL+ H+ YV
Sbjct: 54  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
            CC F+   +L+ SGS D++V IWD+
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDV 139

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 23/135 (17%)
Query: 98  QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE 157
           Q  PT V        T+  HT AV+SV+F+     L S S DK +K+W        KT+ 
Sbjct: 3   QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 62
Query: 158 SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM-----------------------LATLL 194
            H   ++   +S D +LL S S+DKT+ IWD+                        + L+
Sbjct: 63  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 195 ASGSNDKTVTIWDMR 209
            SGS D++V IWD++
Sbjct: 123 VSGSFDESVRIWDVK 137

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 23/135 (17%)
Query: 98  QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE 157
           Q  PT V        T+  HT AV+SV+F+     L S S DK +K+W        KT+ 
Sbjct: 3   QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 62
Query: 158 SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM-----------------------LATLL 194
            H   ++   +S D +LL S S+DKT+ IWD+                        + L+
Sbjct: 63  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 195 ASGSNDKTVTIWDMR 209
            SGS D++V IWD++
Sbjct: 123 VSGSFDESVRIWDVK 137

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
           G Y G+  +T+  H   ++ V ++  S+LLVS S DKT+K+WDV S  C+KTL+ H+ YV
Sbjct: 54  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
            CC F+   +L+ SGS D++V IWD+
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDV 139

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
           G Y G+  +T+  H   ++ V ++  S+LLVS S DKT+K+WDV S  C+KTL+ H+ YV
Sbjct: 50  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 109
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
            CC F+   +L+ SGS D++V IWD+
Sbjct: 110 FCCNFNPQSNLIVSGSFDESVRIWDV 135

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 23/135 (17%)
Query: 98  QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE 157
           Q  PT V        T+  HT AV+SV+F+     L S S DK +K+W        KT+ 
Sbjct: 4   QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 63
Query: 158 SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM-----------------------LATLL 194
            H   ++   +S D +LL S S+DKT+ IWD+                        + L+
Sbjct: 64  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 123
Query: 195 ASGSNDKTVTIWDMR 209
            SGS D++V IWD++
Sbjct: 124 VSGSFDESVRIWDVK 138

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 78/205 (38%), Gaps = 56/205 (27%)
Query: 30  MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT 89
           +R VR + D  L+A+  +D+TV VW                          V A   C+ 
Sbjct: 237 VRMVRPNQDGTLIASCSNDQTVRVW--------------------------VVATKECKA 270
Query: 90  --RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV 147
             R     V+ I       Y   SE  G  T      +       L+SGS DKT+K+WDV
Sbjct: 271 ELREHRHVVECISWAPESSYSSISEATGSETK-----KSGKPGPFLLSGSRDKTIKMWDV 325
Query: 148 PSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM------------------ 189
            +  C+ TL  H  +V    F      + S ++DKT+ +WD                   
Sbjct: 326 STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS 385
Query: 190 -----LATLLASGSNDKTVTIWDMR 209
                 A  + +GS D+TV +W+ R
Sbjct: 386 LDFHKTAPYVVTGSVDQTVKVWECR 410

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 23/116 (19%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
           H S VT V F+   S++VS S D T+K+WD  +    +TL+ HT  V   +F     LLA
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 177 SGSNDKTVTIWDM-----LATL------------------LASGSNDKTVTIWDMR 209
           S S D T+ +WD      + T+                  + S S DKT+ +W+++
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 35  FSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCR--TRVF 92
           FS D + +A+ G D+T+ V++++    +++   + H          V  C      + + 
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDI--KAHED-------EVLCCAFSSDDSYIA 680
Query: 93  STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS--LLVSGSVDKTVKLWDVPSL 150
           +    + +       G+   T   H+  V    F +KS+  LL +GS D  +KLWD+   
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 740
Query: 151 TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
            C  T+  HT  V  C FS DD LLAS S D T+ +WD+
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 25/117 (21%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
           HT AV    F+     + S   DKT++++   +   +  +++H   V CC FS DDS +A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 177 SGSNDKTVTIWDMLA-------------------------TLLASGSNDKTVTIWDM 208
           + S DK V IWD                             LLA+GSND  + +WD+
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 737

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 35  FSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCR--TRVF 92
           FS D + +A+ G D+T+ V++++    +++   + H          V  C      + + 
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDI--KAHED-------EVLCCAFSSDDSYIA 673
Query: 93  STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS--LLVSGSVDKTVKLWDVPSL 150
           +    + +       G+   T   H+  V    F +KS+  LL +GS D  +KLWD+   
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733
Query: 151 TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
            C  T+  HT  V  C FS DD LLAS S D T+ +WD+
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 25/117 (21%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
           HT AV    F+     + S   DKT++++   +   +  +++H   V CC FS DDS +A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 177 SGSNDKTVTIWDMLA-------------------------TLLASGSNDKTVTIWDM 208
           + S DK V IWD                             LLA+GSND  + +WD+
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 730

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 25/127 (19%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
           H +AV  V F+ K   +VS S D+T+K+W+  +   ++TL  H R + C  +   D L+ 
Sbjct: 255 HRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVV 310
Query: 177 SGSNDKTVTIWDM-----LATL----------------LASGSNDKTVTIWDMRGNLSVD 215
           SGS+D T+ +WD+     L  L                + SG+ D  + +WD+   L   
Sbjct: 311 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPR 370
Query: 216 VPLNYCC 222
            P    C
Sbjct: 371 APAGTLC 377

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 94/239 (39%), Gaps = 68/239 (28%)
Query: 18  LILRGSVHIGSNMRCVRFSP--DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRI 75
           L+L+G++   ++M     +P  +  ++ +   D+++ +W+     L  +    G  Q R+
Sbjct: 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWK-----LTKDDKAYGVAQRRL 426
Query: 76  EGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGR-----------------HT 118
            G               S FV+ ++ +  G +       G                  HT
Sbjct: 427 TG--------------HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHT 472
Query: 119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL----ESHTRYVTCCTFSCD--D 172
             V SV F+  +  +VS S D+T+KLW+     C  T+    E H  +V+C  FS +   
Sbjct: 473 KDVLSVAFSLDNRQIVSASRDRTIKLWNTLG-ECKYTISEGGEGHRDWVSCVRFSPNTLQ 531
Query: 173 SLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDM 208
             + S S DKTV +W++                         +L ASG  D  V +WD+
Sbjct: 532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 32/204 (15%)
Query: 19  ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGW 78
           +L G V   + +RCV++  D R + +G  D  V VW  +  + +     +GHT       
Sbjct: 234 VLMGHV---AAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTL--QGHTN------ 280
Query: 79  GRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV 138
            RV +       V S  +   I       G    T+  H S  + +    K ++LVSG+ 
Sbjct: 281 -RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNA 337
Query: 139 DKTVKLWDVPSLTCIKTLE---SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM------ 189
           D TVK+WD+ +  C++TL+    H   VTC  F  + + + + S+D TV +WD+      
Sbjct: 338 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFI 395
Query: 190 --LATLLASGSNDKTVTIWDMRGN 211
             L TL + GS      +W +R +
Sbjct: 396 RNLVTLESGGSGG---VVWRIRAS 416

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 61/159 (38%), Gaps = 50/159 (31%)
Query: 33  VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF 92
           V FSPD R + +GG D  + VW      +        HT  R                  
Sbjct: 115 VAFSPDNRQIVSGGRDNALRVWNVKGECM--------HTLSR------------------ 148
Query: 93  STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHK--SSLLVSGSVDKTVKLWDVPSL 150
                                 G HT  V+ VRF+    + ++VSG  D  VK+WD+ + 
Sbjct: 149 ----------------------GAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATG 186
Query: 151 TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
             +  L+ HT YVT  T S D SL AS   D    +WD+
Sbjct: 187 RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 36/171 (21%)
Query: 82  PACPLCRTRVFSTFVKQII------PTRVGV---YGQDSETVGRHTSAVTSVRFNHKSSL 132
           P  P   T+V ST   + +      P R      YG     +  H++ V+ V  ++  + 
Sbjct: 22  PQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNF 81
Query: 133 LVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML-- 190
            VS S D +++LW++ +  C      HT+ V    FS D+  + SG  D  + +W++   
Sbjct: 82  AVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGE 141
Query: 191 ------------------------ATLLASGSNDKTVTIWDMR-GNLSVDV 216
                                   A ++ SG  D  V +WD+  G L  D+
Sbjct: 142 CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDL 192

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCC 166
           YG     +  H+  V+ V  +      +SGS D T++LWD+ + T  +    HT+ V   
Sbjct: 75  YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV 134
Query: 167 TFSCDDSLLASGSNDKTVTIWDMLA 191
            FS D+  + SGS DKT+ +W+ L 
Sbjct: 135 AFSSDNRQIVSGSRDKTIKLWNTLG 159

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCC 166
           YG     +  H+  V+ V  +      +SGS D T++LWD+ + T  +    HT+ V   
Sbjct: 52  YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV 111
Query: 167 TFSCDDSLLASGSNDKTVTIWDMLA 191
            FS D+  + SGS DKT+ +W+ L 
Sbjct: 112 AFSSDNRQIVSGSRDKTIKLWNTLG 136

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 16/166 (9%)
Query: 30  MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT 89
           +R +   P    + +G DD TV +W  ++   + +T          EG      C     
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT---------FEGHEHFVMCVAFNP 150
Query: 90  RVFSTFVKQIIPTRVGVY--GQDSETVGRHTSAVTSVRFNHKSSL-----LVSGSVDKTV 142
           +  STF    +   V V+  GQ +      T     V +     L     +++ S D T+
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 143 KLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
           K+WD  + +C+ TLE H   V+   F     ++ SGS D T+ IW+
Sbjct: 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCI-KTLESHTRYVTCCTFSCDD-SL 174
           H   + S+  +     ++SGS D TVKLW+  +   + +T E H  +V C  F+  D S 
Sbjct: 96  HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 175 LASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRGNLSVD 215
            ASG  D+TV +W      L   + + T+T    RG   VD
Sbjct: 156 FASGCLDRTVKVWS-----LGQSTPNFTLTTGQERGVNYVD 191

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 86/226 (38%), Gaps = 65/226 (28%)
Query: 10  PSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRG 69
           P+L    ++ L  S+   S + CV+FS D   LATG + +T  V+R  D SL+   +D  
Sbjct: 47  PALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCN-KTTQVYRVSDGSLVARLSDDS 105
Query: 70  HTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSA-----VTSV 124
                                                  +D E +   +S      + SV
Sbjct: 106 AAN------------------------------------KDPENLNTSSSPSSDLYIRSV 129
Query: 125 RFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTV 184
            F+     L +G+ D+ +++WD+ +   +  L+ H + +    +      L SGS D+TV
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 189
Query: 185 TIWDML-----------------------ATLLASGSNDKTVTIWD 207
            IWD+                           +A+GS D+ V +WD
Sbjct: 190 RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 42/134 (31%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE------------------S 158
           HTS V  V+F++    L +G  +KT +++ V   + +  L                   S
Sbjct: 63  HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 159 HTRYVTCCTFSCDDSLLASGSNDKTVTIWDM---------------LATL--------LA 195
              Y+    FS D   LA+G+ D+ + IWD+               + +L        L 
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 196 SGSNDKTVTIWDMR 209
           SGS D+TV IWD+R
Sbjct: 182 SGSGDRTVRIWDLR 195

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 17/183 (9%)
Query: 13  FNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQ 72
           +N  E ++    H    +R +   P    + +G DD TV +W  ++   + +T       
Sbjct: 84  YNTGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT------- 135
Query: 73  GRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY--GQDSETVGRHTSAVTSVRFNHKS 130
              EG      C     +  STF    +   V V+  GQ +      T     V +    
Sbjct: 136 --FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 131 SL-----LVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT 185
            L     +++ S D T+K+WD  + +C+ TLE H   V+   F     ++ SGS D T+ 
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253
Query: 186 IWD 188
           IW+
Sbjct: 254 IWN 256

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCI-KTLESHTRYVTCCTFSCDD-SL 174
           H   + S+  +     ++SGS D TVKLW+  +   + +T E H  +V C  F+  D S 
Sbjct: 96  HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 175 LASGSNDKTVTIWDM 189
            ASG  D+TV +W +
Sbjct: 156 FASGCLDRTVKVWSL 170

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 17/183 (9%)
Query: 13  FNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQ 72
           +N  E ++    H    +R +   P    + +G DD TV +W  ++   + +T       
Sbjct: 84  YNTGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT------- 135
Query: 73  GRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY--GQDSETVGRHTSAVTSVRFNHKS 130
              EG      C     +  STF    +   V V+  GQ +      T     V +    
Sbjct: 136 --FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 131 SL-----LVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT 185
            L     +++ S D T+K+WD  + +C+ TLE H   V+   F     ++ SGS D T+ 
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253
Query: 186 IWD 188
           IW+
Sbjct: 254 IWN 256

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCI-KTLESHTRYVTCCTFSCDD-SL 174
           H   + S+  +     ++SGS D TVKLW+  +   + +T E H  +V C  F+  D S 
Sbjct: 96  HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 175 LASGSNDKTVTIWDM 189
            ASG  D+TV +W +
Sbjct: 156 FASGCLDRTVKVWSL 170

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 17/183 (9%)
Query: 13  FNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQ 72
           +N  E ++    H    +R +   P    + +G DD TV +W  ++   + +T       
Sbjct: 84  YNTGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT------- 135
Query: 73  GRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY--GQDSETVGRHTSAVTSVRFNHKS 130
              EG      C     +  STF    +   V V+  GQ +      T     V +    
Sbjct: 136 --FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 131 SL-----LVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT 185
            L     +++ S D T+K+WD  + +C+ TLE H   V+   F     ++ SGS D T+ 
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253
Query: 186 IWD 188
           IW+
Sbjct: 254 IWN 256

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCI-KTLESHTRYVTCCTFSCDD-SL 174
           H   + S+  +     ++SGS D TVKLW+  +   + +T E H  +V C  F+  D S 
Sbjct: 96  HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 175 LASGSNDKTVTIWDM 189
            ASG  D+TV +W +
Sbjct: 156 FASGCLDRTVKVWSL 170

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 99  IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTC-IKTL 156
           I  TR     + S  V  HT+ V  + FN  S  +L +GS DKTV LWD+ +L   + T 
Sbjct: 256 IWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 315
Query: 157 ESHTRYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
           ESH   +    +S  ++++LAS   D+ + +WD+
Sbjct: 316 ESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 99  IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTC-IKTL 156
           I  TR     + S TV  HT+ V  + FN  S  +L +GS DKTV LWD+ +L   + + 
Sbjct: 260 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 319
Query: 157 ESHTRYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
           ESH   +    +S  ++++LAS   D+ + +WD+
Sbjct: 320 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 99  IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTC-IKTL 156
           I  TR     + S TV  HT+ V  + FN  S  +L +GS DKTV LWD+ +L   + + 
Sbjct: 262 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 321
Query: 157 ESHTRYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
           ESH   +    +S  ++++LAS   D+ + +WD+
Sbjct: 322 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 99  IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTC-IKTL 156
           I  TR     + S  V  HT+ V  + FN  S  +L +GS DKTV LWD+ +L   + T 
Sbjct: 256 IWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 315
Query: 157 ESHTRYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
           ESH   +    +S  ++++LAS   D+ + +WD+
Sbjct: 316 ESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 99  IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTC-IKTL 156
           I  TR     + S TV  HT+ V  + FN  S  +L +GS DKTV LWD+ +L   + + 
Sbjct: 258 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 317
Query: 157 ESHTRYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
           ESH   +    +S  ++++LAS   D+ + +WD+
Sbjct: 318 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 93/224 (41%), Gaps = 42/224 (18%)
Query: 18  LILRGSVHIGSNMRC--VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETN-DRGHTQGR 74
           L+L G V    + RC  + ++P   LLA+ G D  + +W ++  S I ++    GH +  
Sbjct: 5   LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTV 64
Query: 75  IEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDS----ETVGRHTSAVTSVRFNHKS 130
                R  A   C   + S        T +    QD      T+  H + V SV +    
Sbjct: 65  -----RKVAWSPCGNYLASASFDAT--TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG 117
Query: 131 SLLVSGSVDKTVKLWDV---PSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI- 186
           +LL + S DK+V +W+V       C+  L SHT+ V    +     LLAS S D TV + 
Sbjct: 118 NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177
Query: 187 ------WDMLATL------------------LASGSNDKTVTIW 206
                 W   ATL                  LAS S+D+TV IW
Sbjct: 178 REEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 99  IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTC-IKTL 156
           I  TR     + S +V  HT+ V  + FN  S  +L +GS DKTV LWD+ +L   + + 
Sbjct: 254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313
Query: 157 ESHTRYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
           ESH   +    +S  ++++LAS   D+ + +WD+
Sbjct: 314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 80/213 (37%), Gaps = 73/213 (34%)
Query: 30  MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT 89
           +R V + P T LLA G  D TV++W  +      E+ DR                     
Sbjct: 61  IRSVAWRPHTSLLAAGSFDSTVSIWAKE------ESADR--------------------- 93
Query: 90  RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV-- 147
               TF   ++    G           H + V  V +++    L + S DK+V +W+   
Sbjct: 94  ----TFEMDLLAIIEG-----------HENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138
Query: 148 --PSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI-------WDMLATL----- 193
                 CI  L+ H++ V    +   ++LLAS S D TV I       W+ +A L     
Sbjct: 139 SGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG 198
Query: 194 ---------------LASGSNDKTVTIWDMRGN 211
                          L SGS+D TV +W   G+
Sbjct: 199 TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 49/124 (39%), Gaps = 34/124 (27%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS-------LTCIKTLESHTRYVTCCTFS 169
           H  A+ SV +   +SLL +GS D TV +W           +  +  +E H   V    +S
Sbjct: 57  HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS 116
Query: 170 CDDSLLASGSNDKTVTIWDMLAT---------------------------LLASGSNDKT 202
            D   LA+ S DK+V IW+   +                           LLAS S D T
Sbjct: 117 NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT 176
Query: 203 VTIW 206
           V IW
Sbjct: 177 VRIW 180

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 48/102 (47%)
Query: 105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVT 164
           G +G   + +  H   V+ +  + ++   +S S DKT++LWD+ + T  K    H   V 
Sbjct: 63  GYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVY 122
Query: 165 CCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIW 206
              FS D+  + S   ++ + +W++L     S +  +  + W
Sbjct: 123 SVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDW 164

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 84/224 (37%), Gaps = 40/224 (17%)
Query: 16  TELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRI 75
           T   LRG +   + +  + +  D+RLL +   D  + +W S        T ++ H     
Sbjct: 58  TRRTLRGHL---AKIYAMHWGTDSRLLVSASQDGKLIIWDS-------YTTNKVHAIPLR 107
Query: 76  EGWGRVPACPLCRTRVFSTFVKQI-----IPTRVGVYGQDSETVGRHTSAVTSVRFNHKS 130
             W    A       V    +  I     + TR G      E  G HT  ++  RF   +
Sbjct: 108 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG-HTGYLSCCRFLDDN 166
Query: 131 SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML 190
            ++ S S D T  LWD+ +     T   HT  V   + + D  L  SG+ D +  +WD+ 
Sbjct: 167 QIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 225
Query: 191 ATL-----------------------LASGSNDKTVTIWDMRGN 211
             +                        A+GS+D T  ++D+R +
Sbjct: 226 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 269

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
           HT  V S+     + L VSG+ D + KLWDV    C +T   H   +    F  + +  A
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 177 SGSNDKTVTIWDMLA 191
           +GS+D T  ++D+ A
Sbjct: 243 TGSDDATCRLFDLRA 257

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
           HT  V S+     + L VSG+ D + KLWDV    C +T   H   +    F  + +  A
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 177 SGSNDKTVTIWDMLA 191
           +GS+D T  ++D+ A
Sbjct: 243 TGSDDATCRLFDLRA 257

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 84/224 (37%), Gaps = 40/224 (17%)
Query: 16  TELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRI 75
           T   LRG +   + +  + +  D+RLL +   D  + +W S        T ++ H     
Sbjct: 47  TRRTLRGHL---AKIYAMHWGTDSRLLVSASQDGKLIIWDS-------YTTNKVHAIPLR 96
Query: 76  EGWGRVPACPLCRTRVFSTFVKQI-----IPTRVGVYGQDSETVGRHTSAVTSVRFNHKS 130
             W    A       V    +  I     + TR G      E  G HT  ++  RF   +
Sbjct: 97  SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG-HTGYLSCCRFLDDN 155
Query: 131 SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML 190
            ++ S S D T  LWD+ +     T   HT  V   + + D  L  SG+ D +  +WD+ 
Sbjct: 156 QIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 191 ATL-----------------------LASGSNDKTVTIWDMRGN 211
             +                        A+GS+D T  ++D+R +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 84/224 (37%), Gaps = 40/224 (17%)
Query: 16  TELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRI 75
           T   LRG +   + +  + +  D+RLL +   D  + +W S        T ++ H     
Sbjct: 47  TRRTLRGHL---AKIYAMHWGTDSRLLVSASQDGKLIIWDS-------YTTNKVHAIPLR 96
Query: 76  EGWGRVPACPLCRTRVFSTFVKQI-----IPTRVGVYGQDSETVGRHTSAVTSVRFNHKS 130
             W    A       V    +  I     + TR G      E  G HT  ++  RF   +
Sbjct: 97  SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG-HTGYLSCCRFLDDN 155
Query: 131 SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML 190
            ++ S S D T  LWD+ +     T   HT  V   + + D  L  SG+ D +  +WD+ 
Sbjct: 156 QIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 191 ATL-----------------------LASGSNDKTVTIWDMRGN 211
             +                        A+GS+D T  ++D+R +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 7/179 (3%)
Query: 33  VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF 92
           + FSPD++ LATG     V ++  +        + RG     I       A       + 
Sbjct: 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSI-------AYSPDGKYLA 180
Query: 93  STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC 152
           S  +  II       G+   T+  H   + S+ F+  S LLV+ S D  +K++DV     
Sbjct: 181 SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240
Query: 153 IKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRGN 211
             TL  H  +V    F  DD+   S S+DK+V +WD+          D    +W ++ N
Sbjct: 241 AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN 299

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 29/128 (22%)
Query: 113 TVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLW-----DVPSLTCIKTLESHTRYVTCC 166
           T+  H   VTS+  +  + +LL+S S DKT+  W     D      +++ + H+  V  C
Sbjct: 6   TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 167 TFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTV 203
           T + D +   S S DKT+ +WD+                        A+++ SGS DKT+
Sbjct: 66  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 204 TIWDMRGN 211
            +W ++G 
Sbjct: 126 KVWTIKGQ 133

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 29/128 (22%)
Query: 113 TVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLW-----DVPSLTCIKTLESHTRYVTCC 166
           T+  H   VTS+  +  + +LL+S S DKT+  W     D      +++ + H+  V  C
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 167 TFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTV 203
           T + D +   S S DKT+ +WD+                        A+++ SGS DKT+
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 204 TIWDMRGN 211
            +W ++G 
Sbjct: 132 KVWTIKGQ 139

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 29/128 (22%)
Query: 113 TVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLW-----DVPSLTCIKTLESHTRYVTCC 166
           T+  H   VTS+  +  + +LL+S S DKT+  W     D      +++ + H+  V  C
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 167 TFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTV 203
           T + D +   S S DKT+ +WD+                        A+++ SGS DKT+
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 204 TIWDMRGN 211
            +W ++G 
Sbjct: 132 KVWTIKGQ 139

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 29/128 (22%)
Query: 113 TVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLW-----DVPSLTCIKTLESHTRYVTCC 166
           T+  H   VTS+  +  + +LL+S S DKT+  W     D      +++ + H+  V  C
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 167 TFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTV 203
           T + D +   S S DKT+ +WD+                        A+++ SGS DKT+
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 204 TIWDMRGN 211
            +W ++G 
Sbjct: 132 KVWTIKGQ 139

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 29/128 (22%)
Query: 113 TVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLW-----DVPSLTCIKTLESHTRYVTCC 166
           T+  H   VTS+  +  + +LL+S S DKT+  W     D      +++ + H+  V  C
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 167 TFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTV 203
           T + D +   S S DKT+ +WD+                        A+++ SGS DKT+
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 204 TIWDMRGN 211
            +W ++G 
Sbjct: 132 KVWTIKGQ 139

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 112 ETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCD 171
           ++V  HT+ +++  F +    +++ S D T  LWDV S   +++   H   V C   +  
Sbjct: 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207
Query: 172 DS--LLASGSNDKTVTIWDMLA-----------------------TLLASGSNDKTVTIW 206
           ++     SG  DK   +WDM +                          ASGS+D T  ++
Sbjct: 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY 267
Query: 207 DMRGNLSVDV 216
           D+R +  V +
Sbjct: 268 DLRADREVAI 277

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 41/176 (23%)
Query: 33  VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF 92
           +R++PD R LA+GG+D  V VW S               +G   GW      PL      
Sbjct: 247 LRWAPDGRHLASGGNDNLVNVWPSAP------------GEG---GW-----VPLQTFTQH 286
Query: 93  STFVKQII--PTRVGVYGQDSETVGRHT-----------------SAVTSVRFNHKSSLL 133
              VK +   P +  V      T  RH                  S V S+ ++     L
Sbjct: 287 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKEL 346
Query: 134 VSGS--VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW 187
           +SG       + +W  P++  +  L+ HT  V   T S D + +AS + D+T+ +W
Sbjct: 347 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 19/165 (11%)
Query: 33  VRFSPDTRLLATGGDDETVTVWRSDD-----LSLIMETNDRGHTQGRIEGWGRVPACPLC 87
           +R++PD R LA+GG+D  V VW S       + L   T  +G  +        V  CP  
Sbjct: 156 LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA-------VAWCPW- 207
Query: 88  RTRVFST---FVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS--VDKTV 142
           ++ V +T      + I       G     V  H S V S+ ++     L+SG       +
Sbjct: 208 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQL 266
Query: 143 KLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW 187
            +W  P++  +  L+ HT  V   T S D + +AS + D+T+ +W
Sbjct: 267 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 41/176 (23%)
Query: 33  VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF 92
           +R++PD R LA+GG+D  V VW S               +G   GW      PL      
Sbjct: 236 LRWAPDGRHLASGGNDNLVNVWPSAP------------GEG---GW-----VPLQTFTQH 275
Query: 93  STFVKQII--PTRVGVYGQDSETVGRHT-----------------SAVTSVRFNHKSSLL 133
              VK +   P +  V      T  RH                  S V S+ ++     L
Sbjct: 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKEL 335
Query: 134 VSGS--VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW 187
           +SG       + +W  P++  +  L+ HT  V   T S D + +AS + D+T+ +W
Sbjct: 336 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 28  SNMRCVRF--SPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACP 85
           S +RC+      + + + TG  D T+ VW+     L  E++   H        G     P
Sbjct: 204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWK-----LPKESSVPDH--------GEEHDYP 250
Query: 86  LCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLW 145
           L    VF T  +   P  VGV       +  H ++V +V  +   +++VSGS D T+ +W
Sbjct: 251 L----VFHTPEEN--PYFVGV-------LRGHMASVRTV--SGHGNIVVSGSYDNTLIVW 295
Query: 146 DVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
           DV  + C+  L  HT  +    +  +     S S D T+ IWD+
Sbjct: 296 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSL-- 174
           H   V ++++ H   +LVSGS D+TV++WD+    C    E H   V C       ++  
Sbjct: 161 HDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY 219
Query: 175 LASGSNDKTVTIWDM 189
           + +GS D T+ +W +
Sbjct: 220 IVTGSRDNTLHVWKL 234

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 67  DRGHTQGRIEGWGRV-------PACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTS 119
           D G + G + G  R        P+ P    R+ S      +    G   +   T G HT 
Sbjct: 135 DTGTSNGNLTGQARAMNSVDFKPSRPF---RIISGSDDNTVAIFEGPPFKFKSTFGEHTK 191
Query: 120 AVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE-------SHTRYVTCCTFSCDD 172
            V SVR+N   SL  S   D T+ L++    T     E       +H+  V   T+S D 
Sbjct: 192 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 251
Query: 173 SLLASGSNDKTVTIWDMLATL 193
           + +AS S DKT+ IW+ +ATL
Sbjct: 252 TKIASASADKTIKIWN-VATL 271

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 30/164 (18%)
Query: 28  SNMRCVRF--SPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACP 85
           S +RC+      + + + TG  D T+ VW+     L  E++   H        G     P
Sbjct: 204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWK-----LPKESSVPDH--------GEEHDYP 250
Query: 86  LCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLW 145
           L    VF T  +   P  VGV       +  H ++V +V  +   +++VSGS D T+ +W
Sbjct: 251 L----VFHTPEEN--PYFVGV-------LRGHXASVRTV--SGHGNIVVSGSYDNTLIVW 295
Query: 146 DVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
           DV    C+  L  HT  +    +  +     S S D T+ IWD+
Sbjct: 296 DVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSL-- 174
           H   V ++++ H   +LVSGS D+TV++WD+    C    E H   V C       ++  
Sbjct: 161 HDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY 219
Query: 175 LASGSNDKTVTIWDM 189
           + +GS D T+ +W +
Sbjct: 220 IVTGSRDNTLHVWKL 234

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 29/128 (22%)
Query: 113 TVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLW-----DVPSLTCIKTLESHTRYVTCC 166
           T+  H   VTS+  +  + +LL+S S DKT+  W     D      +++ + H+  V  C
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 167 TFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTV 203
           T + D +   S S DKT+ +WD+                        A+ + SGS DKT+
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTI 131
Query: 204 TIWDMRGN 211
            +W ++G 
Sbjct: 132 KVWTIKGQ 139

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 103 RVGVYGQDSETVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLT-CIKTLESHT 160
           R+ ++G  SE    HT+ V S+  N   +++ +SGS D TV+LWD+   +  ++T   H 
Sbjct: 192 RISIFG--SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE 249
Query: 161 RYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
             +    F  D     +GS+D T  ++DM
Sbjct: 250 GDINSVKFFPDGQRFGTGSDDGTCRLFDM 278

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 31/138 (22%)
Query: 104 VGVYGQDSETVGR-----HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES 158
           V V+  DS +V        ++ V SV+++H  S L  G  +  V ++DV S T ++T+  
Sbjct: 115 VYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG 174
Query: 159 HTRYVTCCTFSCDDSLLASGSNDKTVTIWDM------LATL------------------L 194
           H   V C   S +  +L+SGS    +   D+      + TL                  L
Sbjct: 175 HQARVGC--LSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQL 232
Query: 195 ASGSNDKTVTIWDMRGNL 212
           ASG ND  V IWD R ++
Sbjct: 233 ASGGNDNVVQIWDARSSI 250

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 12/160 (7%)
Query: 32  CVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRV 91
           C+  S D   L TGG D TV  W   DL    +      T  +I   G  P        +
Sbjct: 188 CIDISNDGTKLWTGGLDNTVRSW---DLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGM 243
Query: 92  FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP-SL 150
            S+ V+ +      V   D   +  H S V S++F +     VS   D  +  W  P   
Sbjct: 244 ESSNVEVL-----HVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298
Query: 151 TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML 190
           +  ++ ES +  V  C  S DD  + +GS DK  T+++++
Sbjct: 299 SIFQSKESSS--VLSCDISVDDKYIVTGSGDKKATVYEVI 336

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.96
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.95
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.95
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.95
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.95
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.95
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.95
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.95
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.95
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.94
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.94
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.94
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.94
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.94
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.94
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.94
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.94
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.94
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.93
2pm7_B	297	Protein transport protein SEC13, protein transport	99.93
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.93
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.93
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.93
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.93
2pm7_B	297	Protein transport protein SEC13, protein transport	99.93
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.93
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.93
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.93
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.93
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.93
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.92
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.92
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.92
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.92
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.92
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.92
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.92
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.91
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.91
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.91
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.91
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.91
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.91
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.91
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.9
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.9
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.9
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.9
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.9
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.9
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.9
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.9
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.89
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.89
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.89
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.89
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.89
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.89
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.89
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.89
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.89
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.89
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.89
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.89
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.89
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.89
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.89
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.89
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.89
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.89
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.89
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.88
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.88
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.88
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.88
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.88
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.88
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.88
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.87
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.87
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.87
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.87
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.87
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.87
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.87
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.87
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.87
3jro_A	753	Fusion protein of protein transport protein SEC13	99.87
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.87
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.87
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.87
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.87
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.86
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.86
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.86
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.86
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.86
3jro_A	753	Fusion protein of protein transport protein SEC13	99.86
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.86
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.86
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.86
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.86
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.86
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.85
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.85
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.85
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.84
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.84
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.84
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.84
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.84
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.84
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.84
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.83
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.83
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.83
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.82
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.82
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.82
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.82
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.81
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.74
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.72
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.71
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.71
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.69
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.69
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.65
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.53
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.51
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.49
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.47
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.43
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.43
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.43
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.42
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.42
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.4
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.4
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.39
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.37
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.36
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.35
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.34
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.34
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.32
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.31
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.3
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.29
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.29
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.29
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.28
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.27
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.27
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.24
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.21
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.17
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.16
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.15
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.11
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.11
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.1
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.07
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.07
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.01
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.96
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.95
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.92
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.91
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.89
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.87
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.84
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.81
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.8
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.8
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.8
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.79
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.77
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.75
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.72
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.71
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.7
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.7
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.58
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.57
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.52
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.52
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.52
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.51
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.48
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.48
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.43
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.4
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.4
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.4
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.37
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.37
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.33
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.29
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.29
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.29
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.27
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.26
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.25
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.25
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.22
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.17
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.16
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.09
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.07
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.04
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.99
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.98
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.95
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.89
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.85
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.81
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.79
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.78
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.6
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.58
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.54
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.46
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.45
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.42
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.38
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.3
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.18
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.17
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.15
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.08
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.08
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.06
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.03
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.01
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.97
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.97
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.82
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.81
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.37
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.36
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	96.29
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.28
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.2
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.15
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.05
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	95.81
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.7
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.63
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	95.61
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	95.6
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	95.42
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	95.16
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	95.04
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	94.95
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	94.27
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	94.25
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	93.95
2p4o_A	306	Hypothetical protein; putative lactonase, structur	93.78
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	93.61
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	92.79
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	92.45
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	92.44
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.21
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.64
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	91.31
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	91.22
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	90.96
2p4o_A	306	Hypothetical protein; putative lactonase, structur	90.67
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	90.61
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	90.59
4a2l_A	795	BT_4663, two-component system sensor histidine kin	90.47
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	90.28
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	90.21
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	89.68
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	89.55
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	89.38
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	89.28
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	88.74
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	88.72
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	88.11
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	87.77
3kya_A	496	Putative phosphatase; structural genomics, joint c	87.29
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	86.18
3kya_A	496	Putative phosphatase; structural genomics, joint c	84.8
3v65_B	386	Low-density lipoprotein receptor-related protein;	84.28
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	84.15
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	83.93
4a2l_A	795	BT_4663, two-component system sensor histidine kin	83.92
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	82.39
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	81.72
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	81.59
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	81.44
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	81.32
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.45
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	80.26

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.96  E-value=3.6e-28  Score=195.52  Aligned_cols=182  Identities=21%  Similarity=0.335  Sum_probs=137.5

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ   98 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (222)
                      ++.+|   .+.|.+++|+|++++|++|+.||+|++||+.++..+.....  +... +..   ..+.+.....+.+.....
T Consensus         8 ~~~~h---~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~--~~~~-v~~---~~~~~~~~~l~s~s~d~~   78 (304)
T 2ynn_A            8 TFSNR---SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV--TETP-VRA---GKFIARKNWIIVGSDDFR   78 (304)
T ss_dssp             EEEEE---CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC--CSSC-EEE---EEEEGGGTEEEEEETTSE
T ss_pred             eecCC---CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeec--cCCc-EEE---EEEeCCCCEEEEECCCCE
Confidence            44555   78899999999999999999999999999998876665421  1111 111   111112222223333334


Q ss_pred             eEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceEEEeccCCccEEEEEEcC-CCCEEE
Q psy16881         99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL-TCIKTLESHTRYVTCCTFSC-DDSLLA  176 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~V~~~~~s~-~~~~l~  176 (222)
                      +..|+.. .+.....+.+|...|.+++|+|+++++++|+.|++|++||++++ .....+.+|...|.+++|+| ++.+|+
T Consensus        79 i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~  157 (304)
T 2ynn_A           79 IRVFNYN-TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA  157 (304)
T ss_dssp             EEEEETT-TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred             EEEEECC-CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEE
Confidence            5555431 11222356789999999999999999999999999999999876 45567889999999999999 678999


Q ss_pred             EeeCCCeEEEEeCC--------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        177 SGSNDKTVTIWDML--------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       177 s~s~D~~i~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +|+.|++|++||+.                          ..++++++.|++|++||++.
T Consensus       158 sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~  217 (304)
T 2ynn_A          158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT  217 (304)
T ss_dssp             EEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred             EEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence            99999999999973                          24799999999999999984

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.95  E-value=1.9e-26  Score=192.89  Aligned_cols=182  Identities=29%  Similarity=0.423  Sum_probs=141.5

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ   98 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (222)
                      .+.+|   .+.|.+++|+|++++|++|+.||+|++||+.++.....+  .+|... +..   +.+.+.....+.+.....
T Consensus       103 ~l~gh---~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l--~~h~~~-V~~---v~~~~~~~~l~sgs~D~~  173 (410)
T 1vyh_C          103 ALSGH---RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL--KGHTDS-VQD---ISFDHSGKLLASCSADMT  173 (410)
T ss_dssp             EEECC---SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE--CCCSSC-EEE---EEECTTSSEEEEEETTSC
T ss_pred             eeccc---CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE--eccCCc-EEE---EEEcCCCCEEEEEeCCCe
Confidence            44455   788999999999999999999999999999988776655  233322 111   122222222233333334


Q ss_pred             eEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEe
Q psy16881         99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG  178 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~  178 (222)
                      +..|+... ......+.+|...|.+++|+|+++++++|+.|++|++||+++++++..+.+|...|.++.+++++.+|+++
T Consensus       174 i~iwd~~~-~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~  252 (410)
T 1vyh_C          174 IKLWDFQG-FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC  252 (410)
T ss_dssp             CCEEETTS-SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEeCCC-CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEE
Confidence            55554311 11223456799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCC-------------------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        179 SNDKTVTIWDML-------------------------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       179 s~D~~i~lwd~~-------------------------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +.|++|++||+.                                           ..++++|+.|++|++||++.
T Consensus       253 s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~  327 (410)
T 1vyh_C          253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  327 (410)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             cCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            999999999973                                           23699999999999999984

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.95  E-value=4.1e-26  Score=187.09  Aligned_cols=180  Identities=20%  Similarity=0.211  Sum_probs=131.1

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccce-eeeeeeeeEeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRV-FSTFVKQIIPTRV  104 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  104 (222)
                      |.+.|.+++|+|+|++|++|+.||+|++||+.++..+..+  .+|.... ..   +.+.......+ .......+..|+.
T Consensus       126 H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~--~~h~~~V-~~---~~~~~~~~~~l~s~s~D~~v~iwd~  199 (344)
T 4gqb_B          126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY--RAHAAQV-TC---VAASPHKDSVFLSCSEDNRILLWDT  199 (344)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--CCCSSCE-EE---EEECSSCTTEEEEEETTSCEEEEET
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE--cCcCCce-EE---EEecCCCCCceeeeccccccccccc
Confidence            4788999999999999999999999999999998887766  3333221 11   12222222222 2223344555543


Q ss_pred             eeeccCCcc--ccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCC-CEEEEeeC
Q psy16881        105 GVYGQDSET--VGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD-SLLASGSN  180 (222)
Q Consensus       105 ~~~~~~~~~--~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~-~~l~s~s~  180 (222)
                      ... .....  ...|...+.+++|+|++ +++++|+.||.|+|||+++++++.++.+|...|++++|+|++ ++|++++.
T Consensus       200 ~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~  278 (344)
T 4gqb_B          200 RCP-KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSE  278 (344)
T ss_dssp             TSS-SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEET
T ss_pred             ccc-ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeC
Confidence            211 11111  22356679999999864 689999999999999999999999999999999999999998 57999999


Q ss_pred             CCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCCCc
Q psy16881        181 DKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRGNL  212 (222)
Q Consensus       181 D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~~~  212 (222)
                      |++|++||+.                       ..+++++|.|++|++|++..+.
T Consensus       279 D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          279 DCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             TSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             CCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            9999999974                       2468899999999999998553

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.95  E-value=3.6e-26  Score=185.47  Aligned_cols=178  Identities=22%  Similarity=0.331  Sum_probs=136.3

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |...|.+++|+|+++++++++.|++|++||+.++..+......  .. .+..   +.+.+.....+.......+..++..
T Consensus        79 h~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~--~~-~~~~---~~~spdg~~l~~g~~dg~v~i~~~~  152 (321)
T 3ow8_A           79 HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG--PV-DAWT---LAFSPDSQYLATGTHVGKVNIFGVE  152 (321)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC--TT-CCCC---EEECTTSSEEEEECTTSEEEEEETT
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCC--Cc-cEEE---EEECCCCCEEEEEcCCCcEEEEEcC
Confidence            3788999999999999999999999999999988776654321  11 0111   1122222222222333334333321


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                      . ......+..|...|.+++|+|+++++++|+.||.|++||+++++++..+.+|...|.+++|+|++++|++++.|++|+
T Consensus       153 ~-~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~  231 (321)
T 3ow8_A          153 S-GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK  231 (321)
T ss_dssp             T-CSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEE
T ss_pred             C-CceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEE
Confidence            1 111123456778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        186 IWDML-----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       186 lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +||+.                       ..+|++++.|++|++||+++
T Consensus       232 iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~  279 (321)
T 3ow8_A          232 IYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT  279 (321)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence            99974                       35799999999999999973

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.95  E-value=3.6e-26  Score=185.48  Aligned_cols=175  Identities=26%  Similarity=0.372  Sum_probs=135.9

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ...+.+++|+|++++|++|+.||+|++|++.+............   .+..   +.+.+.....+.......+..++.. 
T Consensus       122 ~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~---~v~~---~~~spdg~~lasg~~dg~i~iwd~~-  194 (321)
T 3ow8_A          122 PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK---FILS---IAYSPDGKYLASGAIDGIINIFDIA-  194 (321)
T ss_dssp             TTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS---CEEE---EEECTTSSEEEEEETTSCEEEEETT-
T ss_pred             CccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc---eEEE---EEECCCCCEEEEEcCCCeEEEEECC-
Confidence            56688899999999999999999999999998776655432111   1111   1222233333333333344444421 


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI  186 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l  186 (222)
                      .......+.+|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.|++|++
T Consensus       195 ~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~i  274 (321)
T 3ow8_A          195 TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKV  274 (321)
T ss_dssp             TTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence            11122345679999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCC-----------------------CCeEEEeeCCCcEEEEeC
Q psy16881        187 WDML-----------------------ATLLASGSNDKTVTIWDM  208 (222)
Q Consensus       187 wd~~-----------------------~~~l~s~~~d~~i~iwd~  208 (222)
                      ||+.                       ..+|++++.|++|++||.
T Consensus       275 wd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          275 WDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             EeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            9984                       357999999999999995

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.95  E-value=1.3e-25  Score=184.52  Aligned_cols=185  Identities=23%  Similarity=0.384  Sum_probs=138.2

Q ss_pred             EEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee
Q psy16881         18 LILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK   97 (222)
Q Consensus        18 ~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (222)
                      .++.+|   .+.|.+++|+|++++|++|+.||+|++||..+..........  .. .+..   +.+.+.....+......
T Consensus        58 ~~l~gH---~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~--~~-~v~~---~~~sp~g~~lasg~~d~  128 (354)
T 2pbi_B           58 RTLKGH---GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP--CT-WVMA---CAYAPSGCAIACGGLDN  128 (354)
T ss_dssp             EEEECC---SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS--SS-CCCE---EEECTTSSEEEEESTTS
T ss_pred             EEecCC---CCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecC--CC-CEEE---EEECCCCCEEEEeeCCC
Confidence            355566   889999999999999999999999999998877655443211  11 0111   11222222222222333


Q ss_pred             eeEeeeeeee-----ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcC--
Q psy16881         98 QIIPTRVGVY-----GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSC--  170 (222)
Q Consensus        98 ~~~~~~~~~~-----~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~--  170 (222)
                      .+..+.....     ......+..|...|.+++|+++++.+++++.|++|++||+++++++..+.+|...|.++.|+|  
T Consensus       129 ~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~  208 (354)
T 2pbi_B          129 KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE  208 (354)
T ss_dssp             EEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS
T ss_pred             CEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC
Confidence            3333332111     112234567999999999999999999999999999999999999999999999999999987  


Q ss_pred             CCCEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        171 DDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       171 ~~~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      ++++|++|+.|++|++||+.                       ..++++++.|++|++||++..
T Consensus       209 ~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~  272 (354)
T 2pbi_B          209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD  272 (354)
T ss_dssp             SCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            57899999999999999974                       357999999999999999843

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.95  E-value=7.3e-26  Score=184.71  Aligned_cols=183  Identities=22%  Similarity=0.354  Sum_probs=138.0

Q ss_pred             EEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee
Q psy16881         18 LILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK   97 (222)
Q Consensus        18 ~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (222)
                      .++.+|   .+.|.+++|+|++++|++|+.||+|++||+.+.........  +... +..   +.+.+.....+......
T Consensus        49 ~~l~gH---~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~--~~~~-v~~---~~~s~~~~~l~s~~~d~  119 (340)
T 1got_B           49 RTLRGH---LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL--RSSW-VMT---CAYAPSGNYVACGGLDN  119 (340)
T ss_dssp             EEECCC---SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC--SSSC-EEE---EEECTTSSEEEEEETTC
T ss_pred             eeecCC---CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec--CCcc-EEE---EEECCCCCEEEEEeCCC
Confidence            355555   88999999999999999999999999999988776655422  1111 111   11222222223333333


Q ss_pred             eeEeeeeeeec---cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCE
Q psy16881         98 QIIPTRVGVYG---QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSL  174 (222)
Q Consensus        98 ~~~~~~~~~~~---~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~  174 (222)
                      .+..++.....   .....+.+|...|.++.|++++ .+++++.|+.|++||+++++++..+.+|...|.+++|+|++++
T Consensus       120 ~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  198 (340)
T 1got_B          120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL  198 (340)
T ss_dssp             EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             eEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCE
Confidence            44444321111   1112456799999999998866 4899999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        175 LASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       175 l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      |++|+.|++|++||+.                       ..++++++.|++|++||++.
T Consensus       199 l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~  257 (340)
T 1got_B          199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             EEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence            9999999999999974                       35799999999999999984

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.95  E-value=1.5e-25  Score=180.11  Aligned_cols=184  Identities=30%  Similarity=0.498  Sum_probs=141.9

Q ss_pred             eEEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee
Q psy16881         17 ELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV   96 (222)
Q Consensus        17 ~~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (222)
                      ..++.+|   .+.|.+++|+|++++|++|+.||+|++|+..++.......  ++... +..   +.+.+.....+.....
T Consensus        16 ~~~~~gh---~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--~h~~~-v~~---~~~~~~~~~l~s~~~d   86 (312)
T 4ery_A           16 KFTLAGH---TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLG-ISD---VAWSSDSNLLVSASDD   86 (312)
T ss_dssp             EEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSC-EEE---EEECTTSSEEEEEETT
T ss_pred             EEEEccc---CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc--cCCCc-eEE---EEEcCCCCEEEEECCC
Confidence            3345555   7889999999999999999999999999998877665542  22221 111   1222222223333333


Q ss_pred             eeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEE
Q psy16881         97 KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA  176 (222)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~  176 (222)
                      ..+..|+... ......+.+|...|.+++|+|+++++++|+.|+.|++||+++++++..+..|...|.+++|+|++++|+
T Consensus        87 ~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  165 (312)
T 4ery_A           87 KTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV  165 (312)
T ss_dssp             SEEEEEETTT-CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             CEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence            3455554321 112234567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCeEEEEeCC------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        177 SGSNDKTVTIWDML------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       177 s~s~D~~i~lwd~~------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +++.|+.|++||+.                        ..++++++.|+.|++||++.
T Consensus       166 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  223 (312)
T 4ery_A          166 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK  223 (312)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred             EEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            99999999999984                        35799999999999999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.95  E-value=1.1e-25  Score=180.96  Aligned_cols=179  Identities=23%  Similarity=0.324  Sum_probs=134.1

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      +...|.+++|+|++++|++|+.|++|++||+.+++.+..+.  +|... +..   +.+.+.....+.+.....+..|+..
T Consensus        54 ~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~--~h~~~-v~~---~~~~~~~~~l~sgs~D~~v~lWd~~  127 (304)
T 2ynn_A           54 TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE--AHPDY-IRS---IAVHPTKPYVLSGSDDLTVKLWNWE  127 (304)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE--CCSSC-EEE---EEECSSSSEEEEEETTSCEEEEEGG
T ss_pred             cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEe--CCCCc-EEE---EEEcCCCCEEEEECCCCeEEEEECC
Confidence            47889999999999999999999999999999888776652  23221 111   2222333333333344455556532


Q ss_pred             eeccCCccccccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceEEEe-ccCCccEEEEEEcC--CCCEEEEeeCC
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTCIKTL-ESHTRYVTCCTFSC--DDSLLASGSND  181 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~sg~~dg~I~iwd~~~~~~~~~~-~~~~~~V~~~~~s~--~~~~l~s~s~D  181 (222)
                      ........+.+|...|.+++|+| ++.++++|+.|++|++||+++......+ .+|...|..+.|+|  ++++|++++.|
T Consensus       128 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D  207 (304)
T 2ynn_A          128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD  207 (304)
T ss_dssp             GTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT
T ss_pred             CCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC
Confidence            11112234667999999999998 5689999999999999999877665544 35667899999986  77899999999


Q ss_pred             CeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        182 KTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       182 ~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      ++|++||+.                       ..+|++++.|++|++||+++
T Consensus       208 ~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~  259 (304)
T 2ynn_A          208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (304)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             CeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            999999984                       35799999999999999973

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.95  E-value=7.9e-26  Score=189.18  Aligned_cols=177  Identities=24%  Similarity=0.421  Sum_probs=134.6

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |...|.+++|+|++++|++|+.|++|++||+.++..+..+.  +|... +..   +...+.....+.......+..|+..
T Consensus       191 h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~--~h~~~-v~~---~~~~~~g~~l~s~s~D~~v~vwd~~  264 (410)
T 1vyh_C          191 HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT--GHREW-VRM---VRPNQDGTLIASCSNDQTVRVWVVA  264 (410)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSC-EEE---EEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe--CCCcc-EEE---EEECCCCCEEEEEcCCCeEEEEECC
Confidence            36789999999999999999999999999999888776552  22211 111   1111122222222333345555431


Q ss_pred             eeccCCccccccCCCEEEEEEcCC--------------------CCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHK--------------------SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTC  165 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~--------------------~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~  165 (222)
                      . ......+.+|...|.+++|+|+                    +.++++|+.|+.|++||+++++++..+.+|...|.+
T Consensus       265 ~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~  343 (410)
T 1vyh_C          265 T-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG  343 (410)
T ss_dssp             T-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             C-CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEE
Confidence            1 1112245678999999999986                    678999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        166 CTFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       166 ~~~s~~~~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      ++|+|++++|++++.|++|++||+.                       ..++++|+.|++|++|+++
T Consensus       344 v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          344 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            9999999999999999999999974                       3579999999999999975

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.94  E-value=1.3e-25  Score=183.59  Aligned_cols=181  Identities=29%  Similarity=0.409  Sum_probs=134.0

Q ss_pred             eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEee-ccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMET-NDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      |..+.|.+++|+|+|++||+|+.|++|+||++.+....... ...+|... +..   +.+.+.....+.+.....+..|+
T Consensus        14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~-v~~---~~~sp~g~~l~s~s~D~~v~iw~   89 (345)
T 3fm0_A           14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRT-VRK---VAWSPCGNYLASASFDATTCIWK   89 (345)
T ss_dssp             STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSC-EEE---EEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCc-EEE---EEECCCCCEEEEEECCCcEEEEE
Confidence            34448999999999999999999999999998876533221 11233221 221   22233333333333344455554


Q ss_pred             eeeec-cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---ceEEEeccCCccEEEEEEcCCCCEEEEee
Q psy16881        104 VGVYG-QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL---TCIKTLESHTRYVTCCTFSCDDSLLASGS  179 (222)
Q Consensus       104 ~~~~~-~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~---~~~~~~~~~~~~V~~~~~s~~~~~l~s~s  179 (222)
                      ..... .....+.+|...|.+++|+|++++|++|+.|+.|++||+++.   +++..+.+|...|.+++|+|++++|++++
T Consensus        90 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s  169 (345)
T 3fm0_A           90 KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS  169 (345)
T ss_dssp             ECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEE
T ss_pred             ccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEe
Confidence            32111 112356689999999999999999999999999999999765   34667889999999999999999999999


Q ss_pred             CCCeEEEEeCC-------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        180 NDKTVTIWDML-------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       180 ~D~~i~lwd~~-------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      .|++|++||+.                         ..+|++++.|++|++||..
T Consensus       170 ~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          170 YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence            99999999862                         3579999999999999963

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.94  E-value=3.3e-25  Score=179.44  Aligned_cols=157  Identities=20%  Similarity=0.243  Sum_probs=120.0

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |...|.+++|+|+|++|++|+.|++|++||+.+++....+.  +|.... ..   +.+.+.....+.......+..|+..
T Consensus        64 h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~--~h~~~v-~~---~~~~~~~~~l~s~s~D~~i~vwd~~  137 (319)
T 3frx_A           64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--GHKSDV-MS---VDIDKKASMIISGSRDKTIKVWTIK  137 (319)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCE-EE---EEECTTSCEEEEEETTSCEEEEETT
T ss_pred             CcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEc--cCCCcE-EE---EEEcCCCCEEEEEeCCCeEEEEECC
Confidence            47889999999999999999999999999999888776552  332221 11   1122222222333333445555431


Q ss_pred             eeccCCccccccCCCEEEEEEcCC------CCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEee
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHK------SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS  179 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~------~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s  179 (222)
                        ......+.+|...|.++.+.|.      +..+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++
T Consensus       138 --~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~  215 (319)
T 3frx_A          138 --GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG  215 (319)
T ss_dssp             --SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE
T ss_pred             --CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe
Confidence              1222345678999999999885      34899999999999999999999899999999999999999999999999


Q ss_pred             CCCeEEEEeCC
Q psy16881        180 NDKTVTIWDML  190 (222)
Q Consensus       180 ~D~~i~lwd~~  190 (222)
                      .|++|++||+.
T Consensus       216 ~dg~i~iwd~~  226 (319)
T 3frx_A          216 KDGEIMLWNLA  226 (319)
T ss_dssp             TTCEEEEEETT
T ss_pred             CCCeEEEEECC
Confidence            99999999984

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.94  E-value=2.4e-25  Score=195.09  Aligned_cols=176  Identities=22%  Similarity=0.339  Sum_probs=132.7

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCce--EEeeccCCCcceeeccceecCccCCcccceeeeee----eee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSL--IMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV----KQI   99 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~   99 (222)
                      |.+.|.+++|+|+|++||+|+.||+|+|||+.+.+.  ....  .++.. .+..   +.+.+.....+.....    ..+
T Consensus        58 h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~--~~~~~-~v~~---v~fs~dg~~l~~~~~~~~~~~~v  131 (611)
T 1nr0_A           58 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI--PVFSG-PVKD---ISWDSESKRIAAVGEGRERFGHV  131 (611)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE--ECSSS-CEEE---EEECTTSCEEEEEECCSSCSEEE
T ss_pred             CCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee--cccCC-ceEE---EEECCCCCEEEEEECCCCceeEE
Confidence            378899999999999999999999999999865432  2222  12221 1211   2222322222221111    123


Q ss_pred             EeeeeeeeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEe
Q psy16881        100 IPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG  178 (222)
Q Consensus       100 ~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~  178 (222)
                      ..|+.   +.....+.+|...|.+++|+|++. .+++|+.|++|++||.+++++...+.+|...|.+++|+|++++|+++
T Consensus       132 ~~wd~---~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~  208 (611)
T 1nr0_A          132 FLFDT---GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST  208 (611)
T ss_dssp             EETTT---CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEeeC---CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE
Confidence            33332   222345678999999999999986 69999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCC------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        179 SNDKTVTIWDML------------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       179 s~D~~i~lwd~~------------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +.|++|++||+.                              ..+|++++.|++|++||+++
T Consensus       209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~  270 (611)
T 1nr0_A          209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT  270 (611)
T ss_dssp             ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence            999999999952                              24799999999999999973

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.94  E-value=7.6e-25  Score=178.69  Aligned_cols=177  Identities=25%  Similarity=0.365  Sum_probs=132.8

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc----eEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEe
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS----LIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIP  101 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (222)
                      +...|.+++|+|++++|++|+.|+.|++|++.+..    .....  .+|... +....   +... ...+.+.....+..
T Consensus        96 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~--~~h~~~-v~~~~---~~~~-~~l~s~s~d~~i~~  168 (340)
T 1got_B           96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL--AGHTGY-LSCCR---FLDD-NQIVTSSGDTTCAL  168 (340)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEE--ECCSSC-EEEEE---EEET-TEEEEEETTSCEEE
T ss_pred             CCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEe--cCCCcc-EEEEE---ECCC-CcEEEEECCCcEEE
Confidence            47789999999999999999999999999987643    11111  122111 11100   0001 11222222333444


Q ss_pred             eeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCC
Q psy16881        102 TRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSND  181 (222)
Q Consensus       102 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D  181 (222)
                      |+.. .......+.+|...|.+++|+|+++++++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.|
T Consensus       169 wd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d  247 (340)
T 1got_B          169 WDIE-TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD  247 (340)
T ss_dssp             EETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EECC-CCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence            4421 111223456799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCC-------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        182 KTVTIWDML-------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       182 ~~i~lwd~~-------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      ++|++||+.                         ..++++|+.|+.|++||+..
T Consensus       248 ~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~  301 (340)
T 1got_B          248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc
Confidence            999999974                         35799999999999999863

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.94  E-value=3.5e-25  Score=181.54  Aligned_cols=141  Identities=21%  Similarity=0.380  Sum_probs=118.9

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      .+.|.+++|+|++ .|++|+.||+|+|||+.+++......                                        
T Consensus        82 ~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~----------------------------------------  120 (344)
T 4gqb_B           82 EAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSK----------------------------------------  120 (344)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEE----------------------------------------
T ss_pred             CCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEee----------------------------------------
Confidence            4679999999985 67799999999999987654322110                                        


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCC-CEEEEeeCCCeEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD-SLLASGSNDKTVT  185 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~-~~l~s~s~D~~i~  185 (222)
                           ....+|...|++++|+|++++|++|+.|++|++||+++++++..+.+|...|.+++|++++ .+|++++.|++|+
T Consensus       121 -----~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~  195 (344)
T 4gqb_B          121 -----FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRIL  195 (344)
T ss_dssp             -----EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             -----ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccc
Confidence                 0123589999999999999999999999999999999999999999999999999999988 4789999999999


Q ss_pred             EEeCC--------------------------CCeEEEeeCCCcEEEEeCC-CCcc
Q psy16881        186 IWDML--------------------------ATLLASGSNDKTVTIWDMR-GNLS  213 (222)
Q Consensus       186 lwd~~--------------------------~~~l~s~~~d~~i~iwd~~-~~~~  213 (222)
                      +||+.                          ..++++|+.|++|++||++ +++.
T Consensus       196 iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~  250 (344)
T 4gqb_B          196 LWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV  250 (344)
T ss_dssp             EEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC
T ss_pred             cccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE
Confidence            99984                          2478999999999999998 4443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.94  E-value=7.5e-25  Score=180.15  Aligned_cols=179  Identities=20%  Similarity=0.215  Sum_probs=133.7

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccce-eeeeeeeeEeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRV-FSTFVKQIIPTRV  104 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  104 (222)
                      |.+.|.+++|+|+|++|++|+.||+|++||+.++..+..+.  +|... +..   +.+.......+ .......+..|+.
T Consensus       138 h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~--~h~~~-v~~---v~~s~~~~~~~~s~~~dg~v~~wd~  211 (357)
T 4g56_B          138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN--AHSSE-VNC---VAACPGKDTIFLSCGEDGRILLWDT  211 (357)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSC-EEE---EEECTTCSSCEEEEETTSCEEECCT
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc--CCCCC-EEE---EEEccCCCceeeeeccCCceEEEEC
Confidence            47889999999999999999999999999999888776653  22221 111   11222222222 2222334555543


Q ss_pred             eeecc-CCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCC-CEEEEeeCC
Q psy16881        105 GVYGQ-DSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD-SLLASGSND  181 (222)
Q Consensus       105 ~~~~~-~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~-~~l~s~s~D  181 (222)
                      ..... .......|...+.+++|+|++ +++++|+.|+.|++||+++++++..+.+|...|++++|+|++ ++|++++.|
T Consensus       212 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D  291 (357)
T 4g56_B          212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISED  291 (357)
T ss_dssp             TSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT
T ss_pred             CCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC
Confidence            21111 111233467789999999975 689999999999999999999999999999999999999987 679999999


Q ss_pred             CeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        182 KTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       182 ~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      ++|++||+.                       ..+|++++.|++|++||+..
T Consensus       292 ~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          292 CTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             SCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             CEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            999999974                       35799999999999999964

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.94  E-value=3.8e-25  Score=183.16  Aligned_cols=183  Identities=21%  Similarity=0.349  Sum_probs=137.2

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ   98 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (222)
                      ++.+|   .+.|.+++|+|++++|++|+.||+|++||+.++.......  .+... +..   +.+.+.....+.......
T Consensus        61 ~l~gH---~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~--~h~~~-v~~---~~~s~~g~~las~~~d~~  131 (380)
T 3iz6_a           61 TLQGH---SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK--LHCPW-VME---CAFAPNGQSVACGGLDSA  131 (380)
T ss_dssp             EECCC---SSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE--CCCTT-CCC---CEECTTSSEEEECCSSSC
T ss_pred             ccccc---ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe--cCCCC-EEE---EEECCCCCEEEEeeCCCc
Confidence            34555   8899999999999999999999999999998877665542  22211 111   122222222333333334


Q ss_pred             eEeeeeeee------ccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEe-----ccCCccEEEE
Q psy16881         99 IIPTRVGVY------GQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTL-----ESHTRYVTCC  166 (222)
Q Consensus        99 ~~~~~~~~~------~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~-----~~~~~~V~~~  166 (222)
                      +..|+....      ......+.+|...|.++.|.|++ ..+++|+.|++|++||+++++++..+     .+|...|.++
T Consensus       132 v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~  211 (380)
T 3iz6_a          132 CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL  211 (380)
T ss_dssp             CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred             EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence            444443211      11223567899999999999875 57999999999999999999888777     6789999999


Q ss_pred             EEcC-CCCEEEEeeCCCeEEEEeCC------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        167 TFSC-DDSLLASGSNDKTVTIWDML------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       167 ~~s~-~~~~l~s~s~D~~i~lwd~~------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +|++ ++++|++|+.|++|++||+.                        ..++++++.|++|++||+++
T Consensus       212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~  280 (380)
T 3iz6_a          212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT  280 (380)
T ss_dssp             EECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT
T ss_pred             EeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC
Confidence            9976 88999999999999999974                        35799999999999999984

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.94  E-value=6.4e-25  Score=177.73  Aligned_cols=142  Identities=24%  Similarity=0.410  Sum_probs=120.8

Q ss_pred             eeccceEEEEEcCCC-CeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         25 HIGSNMRCVRFSPDT-RLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        25 ~~~~~v~~l~~spdg-~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      .|.+.|.+++|+|++ ++|++|+.|++|++|++.......                                        
T Consensus        15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~----------------------------------------   54 (319)
T 3frx_A           15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF----------------------------------------   54 (319)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE----------------------------------------
T ss_pred             cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc----------------------------------------
Confidence            348889999999965 899999999999999864211000                                        


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKT  183 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~  183 (222)
                          ......+.+|...|.+++|+++++++++|+.|++|++||+++++++..+.+|...|.+++|+|++.+|++++.|++
T Consensus        55 ----~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~  130 (319)
T 3frx_A           55 ----GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT  130 (319)
T ss_dssp             ----EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSC
T ss_pred             ----cccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence                0000123579999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCC----------------------------CeEEEeeCCCcEEEEeCCC
Q psy16881        184 VTIWDMLA----------------------------TLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       184 i~lwd~~~----------------------------~~l~s~~~d~~i~iwd~~~  210 (222)
                      |++||+..                            ..+++++.|+.|++||++.
T Consensus       131 i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  185 (319)
T 3frx_A          131 IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ  185 (319)
T ss_dssp             EEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT
T ss_pred             EEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc
Confidence            99999741                            2689999999999999974

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.4e-24  Score=176.52  Aligned_cols=183  Identities=26%  Similarity=0.370  Sum_probs=128.6

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc--eEEeeccCCCcceeeccceecCccCCcccceeeeee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS--LIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV   96 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (222)
                      ++.+|   .+.|.+++|+|+  +|++|+.|++|++|++....  ........+|... +..   +.+.+.....+.....
T Consensus         9 ~~~~h---~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~-v~~---v~~sp~~~~las~s~D   79 (330)
T 2hes_X            9 SLKLY---KEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKA-IRS---VAWRPHTSLLAAGSFD   79 (330)
T ss_dssp             EEECC---SSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSC-EEE---EEECTTSSEEEEEETT
T ss_pred             eeccC---CCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCC-EEE---EEECCCCCEEEEEeCC
Confidence            34455   888999999987  99999999999999997642  2322211113221 221   2222222223333334


Q ss_pred             eeeEeeeeeee------ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC----CceEEEeccCCccEEEE
Q psy16881         97 KQIIPTRVGVY------GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS----LTCIKTLESHTRYVTCC  166 (222)
Q Consensus        97 ~~~~~~~~~~~------~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~----~~~~~~~~~~~~~V~~~  166 (222)
                      ..+..|+....      ......+.+|...|.+++|+|++++|++|+.|++|++||+++    .+++..+.+|...|.++
T Consensus        80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v  159 (330)
T 2hes_X           80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV  159 (330)
T ss_dssp             SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred             CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence            44555543210      011234568999999999999999999999999999999943    25677888999999999


Q ss_pred             EEcCCCCEEEEeeCCCeEEEEeCC---------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        167 TFSCDDSLLASGSNDKTVTIWDML---------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       167 ~~s~~~~~l~s~s~D~~i~lwd~~---------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +|+|++.+|++++.|++|++||+.                           ...+++++.|++|++||++.
T Consensus       160 ~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          160 IWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            999999999999999999999852                           23689999999999999863

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.93  E-value=1.1e-24  Score=178.13  Aligned_cols=179  Identities=26%  Similarity=0.353  Sum_probs=133.7

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCce--EEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSL--IMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      |...|.+++|+|+|++|++|+.|++|++|++.....  ...+  .+|... +..   +.+.+.....+.......+..|+
T Consensus        60 h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~--~~h~~~-v~~---v~~sp~~~~l~s~s~D~~v~iwd  133 (345)
T 3fm0_A           60 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL--EGHENE-VKS---VAWAPSGNLLATCSRDKSVWVWE  133 (345)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE--CCCSSC-EEE---EEECTTSSEEEEEETTSCEEEEE
T ss_pred             cCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc--cCCCCC-ceE---EEEeCCCCEEEEEECCCeEEEEE
Confidence            477899999999999999999999999999876543  2222  233322 111   22223333333333444555555


Q ss_pred             eeeec--cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--eEEEeccCCccEEEEEEcCCCCEEEEee
Q psy16881        104 VGVYG--QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT--CIKTLESHTRYVTCCTFSCDDSLLASGS  179 (222)
Q Consensus       104 ~~~~~--~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~~~~V~~~~~s~~~~~l~s~s  179 (222)
                      .....  .....+.+|...|.+++|+|++++|++|+.|+.|++||.++++  +...+.+|...|.+++|+|++++|++++
T Consensus       134 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s  213 (345)
T 3fm0_A          134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS  213 (345)
T ss_dssp             ECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe
Confidence            32111  1123456799999999999999999999999999999998764  4578899999999999999999999999


Q ss_pred             CCCeEEEEeCC---------------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        180 NDKTVTIWDML---------------------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       180 ~D~~i~lwd~~---------------------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      .|++|++||..                                       ...+++++.|+.|++|+.+.
T Consensus       214 ~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~  283 (345)
T 3fm0_A          214 DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP  283 (345)
T ss_dssp             TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred             CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence            99999999851                                       24689999999999999863

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.93  E-value=1.4e-24  Score=173.88  Aligned_cols=178  Identities=24%  Similarity=0.338  Sum_probs=127.7

Q ss_pred             eccceEEEEEcCC--CCeEEEecCCCeEEEEeCCCCc--eEEeeccCCCcceeeccceecCccCC--cccceeeeeeeee
Q psy16881         26 IGSNMRCVRFSPD--TRLLATGGDDETVTVWRSDDLS--LIMETNDRGHTQGRIEGWGRVPACPL--CRTRVFSTFVKQI   99 (222)
Q Consensus        26 ~~~~v~~l~~spd--g~~l~tgs~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   99 (222)
                      |.+.|.+++|+|+  +++|++|+.||+|++||+.++.  .....  .+|... +..   +.+.+.  ....+.+.....+
T Consensus        52 H~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~--~~h~~~-v~~---v~~~p~~~g~~l~s~s~d~~v  125 (297)
T 2pm7_B           52 HEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH--AVHSAS-VNS---VQWAPHEYGPMLLVASSDGKV  125 (297)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE--CCCSSC-EEE---EEECCGGGCSEEEEEETTSEE
T ss_pred             ccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe--ecCCCc-eeE---EEeCcCCCCcEEEEEECCCcE
Confidence            3788999999864  8999999999999999998653  22222  122111 111   111111  1112222333344


Q ss_pred             Eeeeeeeec-cCCccccccCCCEEEEEEcCC-------------CCEEEEEeCCCcEEEEeCCCCc----eEEEeccCCc
Q psy16881        100 IPTRVGVYG-QDSETVGRHTSAVTSVRFNHK-------------SSLLVSGSVDKTVKLWDVPSLT----CIKTLESHTR  161 (222)
Q Consensus       100 ~~~~~~~~~-~~~~~~~~h~~~i~~l~~~~~-------------~~~l~sg~~dg~I~iwd~~~~~----~~~~~~~~~~  161 (222)
                      ..++..... .....+.+|...|.+++|+|+             +++|++|+.|++|++||+++++    +...+.+|..
T Consensus       126 ~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~  205 (297)
T 2pm7_B          126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD  205 (297)
T ss_dssp             EEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred             EEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC
Confidence            455432111 112345679999999999986             4799999999999999997755    5677889999


Q ss_pred             cEEEEEEcCCC---CEEEEeeCCCeEEEEeCC----------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        162 YVTCCTFSCDD---SLLASGSNDKTVTIWDML----------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       162 ~V~~~~~s~~~---~~l~s~s~D~~i~lwd~~----------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      .|.+++|+|++   ++|++++.|++|++||+.                            ..+||+++.|++|+||+.+
T Consensus       206 ~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          206 WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            99999999984   899999999999999863                            2468999999999999976

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.93  E-value=4.8e-24  Score=171.31  Aligned_cols=178  Identities=28%  Similarity=0.453  Sum_probs=133.6

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |...|.+++|+|++++|++|+.||+|++||+.+...+....  ++... +..   +.+.+.....+.......+..|+..
T Consensus        64 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~-v~~---~~~~~~~~~l~s~~~d~~i~iwd~~  137 (312)
T 4ery_A           64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK--GHSNY-VFC---CNFNPQSNLIVSGSFDESVRIWDVK  137 (312)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSC-EEE---EEECSSSSEEEEEETTSCEEEEETT
T ss_pred             CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEc--CCCCC-EEE---EEEcCCCCEEEEEeCCCcEEEEECC
Confidence            36789999999999999999999999999999887766552  22211 111   1111222222223333344455431


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec-cCCccEEEEEEcCCCCEEEEeeCCCeE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE-SHTRYVTCCTFSCDDSLLASGSNDKTV  184 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~~~~V~~~~~s~~~~~l~s~s~D~~i  184 (222)
                      . ......+..|...|.+++|+++++++++++.||.|++||+++++.+..+. .+...+.+++|+|++++|++++.|+.|
T Consensus       138 ~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  216 (312)
T 4ery_A          138 T-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL  216 (312)
T ss_dssp             T-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEE
T ss_pred             C-CEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeE
Confidence            1 11223455688999999999999999999999999999999988877654 456679999999999999999999999


Q ss_pred             EEEeCC--------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        185 TIWDML--------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       185 ~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      ++||+.                          ..++++++.|+.|++||++.
T Consensus       217 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~  268 (312)
T 4ery_A          217 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT  268 (312)
T ss_dssp             EEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT
T ss_pred             EEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC
Confidence            999984                          24689999999999999983

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.93  E-value=9.6e-25  Score=178.18  Aligned_cols=145  Identities=22%  Similarity=0.402  Sum_probs=121.7

Q ss_pred             eccceEEEEE-----cC-CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeee
Q psy16881         26 IGSNMRCVRF-----SP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQI   99 (222)
Q Consensus        26 ~~~~v~~l~~-----sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (222)
                      |.+.|.+++|     ++ ++++|++|+.|++|++|++.+......      .                            
T Consensus        20 H~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~------~----------------------------   65 (343)
T 2xzm_R           20 HSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY------F----------------------------   65 (343)
T ss_dssp             CSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB------S----------------------------
T ss_pred             chhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc------c----------------------------
Confidence            3888999999     76 999999999999999999763211000      0                            


Q ss_pred             EeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEee
Q psy16881        100 IPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS  179 (222)
Q Consensus       100 ~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s  179 (222)
                              ......+.+|...|.+++|+|++.++++|+.|++|++||+++++++..+.+|...|.+++|+|++++|++++
T Consensus        66 --------~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~  137 (343)
T 2xzm_R           66 --------GIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAG  137 (343)
T ss_dssp             --------EEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEE
T ss_pred             --------ccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEc
Confidence                    000012356999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCC-----------------------------------CeEEEeeCCCcEEEEeCCCCc
Q psy16881        180 NDKTVTIWDMLA-----------------------------------TLLASGSNDKTVTIWDMRGNL  212 (222)
Q Consensus       180 ~D~~i~lwd~~~-----------------------------------~~l~s~~~d~~i~iwd~~~~~  212 (222)
                      .|++|++||+..                                   .++++++.|+.|++||.+...
T Consensus       138 ~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  205 (343)
T 2xzm_R          138 AEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQI  205 (343)
T ss_dssp             TTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEE
T ss_pred             CCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCce
Confidence            999999999731                                   479999999999999976443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.93  E-value=7.1e-24  Score=173.03  Aligned_cols=178  Identities=19%  Similarity=0.258  Sum_probs=130.8

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |...|.+++|+|++++|++|+.|++|++||+.+++....+.  +|... +..   +.+.+.....+.......+..|+..
T Consensus        75 h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~--~h~~~-v~~---v~~sp~~~~l~s~~~d~~i~~wd~~  148 (343)
T 2xzm_R           75 HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV--GHQSE-VYS---VAFSPDNRQILSAGAEREIKLWNIL  148 (343)
T ss_dssp             CSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEE--CCCSC-EEE---EEECSSTTEEEEEETTSCEEEEESS
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEc--CCCCc-EEE---EEECCCCCEEEEEcCCCEEEEEecc
Confidence            47889999999999999999999999999999887766552  23222 111   2222333333333344455555532


Q ss_pred             ee-ccCCccccccCCCEEEEEEcCCC----------CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCE
Q psy16881        106 VY-GQDSETVGRHTSAVTSVRFNHKS----------SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSL  174 (222)
Q Consensus       106 ~~-~~~~~~~~~h~~~i~~l~~~~~~----------~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~  174 (222)
                      .. .........|...|.+++|+|++          .++++++.|+.|++||. +.+....+.+|...|.+++|+|++++
T Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~  227 (343)
T 2xzm_R          149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKY  227 (343)
T ss_dssp             SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCE
Confidence            10 00111223688999999999987          78999999999999994 46677788899999999999999999


Q ss_pred             EEEeeCCCeEEEEeCC----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        175 LASGSNDKTVTIWDML----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       175 l~s~s~D~~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      |++++.|++|++||+.                      ...+++++.|+.|++||+.+
T Consensus       228 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~  285 (343)
T 2xzm_R          228 IATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMT  285 (343)
T ss_dssp             EEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSS
T ss_pred             EEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            9999999999999983                      11244566788999999873

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.2e-24  Score=176.98  Aligned_cols=179  Identities=26%  Similarity=0.394  Sum_probs=130.4

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCC-------ceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDL-------SLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ   98 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (222)
                      |...|.+++|+|++++|++|+.|++|++|++...       .....+  .+|... +..   +.+.+.....+.......
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~--~~h~~~-V~~---v~~sp~g~~las~s~D~~  130 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII--EGHENE-VKG---VAWSNDGYYLATCSRDKS  130 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE--C----C-EEE---EEECTTSCEEEEEETTSC
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE--cCCCCc-EEE---EEECCCCCEEEEEeCCCE
Confidence            4778999999999999999999999999998532       122222  222221 111   222233333333334445


Q ss_pred             eEeeeeeeec---cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ceEEEeccCCccEEEEEEcCC--
Q psy16881         99 IIPTRVGVYG---QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL--TCIKTLESHTRYVTCCTFSCD--  171 (222)
Q Consensus        99 ~~~~~~~~~~---~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~~~~V~~~~~s~~--  171 (222)
                      +..|+.....   .....+.+|...|.+++|+|++++|++|+.|++|++||..++  +++..+.+|...|.+++|+|+  
T Consensus       131 v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  210 (330)
T 2hes_X          131 VWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG  210 (330)
T ss_dssp             EEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS
T ss_pred             EEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC
Confidence            5566542111   112345679999999999999999999999999999998765  678889999999999999998  


Q ss_pred             CCEEEEeeCCCeEEEEeCC-------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        172 DSLLASGSNDKTVTIWDML-------------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       172 ~~~l~s~s~D~~i~lwd~~-------------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +.+|++++.|++|++||+.                               ..++++++.|++|++||...
T Consensus       211 ~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~  280 (330)
T 2hes_X          211 VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVD  280 (330)
T ss_dssp             SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEET
T ss_pred             eeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCC
Confidence            7799999999999999862                               13589999999999999863

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.93  E-value=1.3e-24  Score=174.13  Aligned_cols=137  Identities=20%  Similarity=0.299  Sum_probs=115.8

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      .+.|++++|+|+|++||+|+.|++|++|++.+....                                            
T Consensus         9 ~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~--------------------------------------------   44 (297)
T 2pm7_B            9 NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK--------------------------------------------   44 (297)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC--------------------------------------------
T ss_pred             cCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE--------------------------------------------
Confidence            788999999999999999999999999997531100                                            


Q ss_pred             eccCCccccccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCc--eEEEeccCCccEEEEEEcCC--CCEEEEeeC
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHK--SSLLVSGSVDKTVKLWDVPSLT--CIKTLESHTRYVTCCTFSCD--DSLLASGSN  180 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~--~~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~~~~V~~~~~s~~--~~~l~s~s~  180 (222)
                         ....+.+|...|.+++|++.  +++|++|+.|++|+|||+++++  .+..+.+|...|.+++|+|+  +.+|++++.
T Consensus        45 ---~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~  121 (297)
T 2pm7_B           45 ---LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS  121 (297)
T ss_dssp             ---CCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             ---EEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC
Confidence               00123469999999999753  7899999999999999998763  56677889999999999997  899999999


Q ss_pred             CCeEEEEeCCC--------------------------------------CeEEEeeCCCcEEEEeCCC
Q psy16881        181 DKTVTIWDMLA--------------------------------------TLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       181 D~~i~lwd~~~--------------------------------------~~l~s~~~d~~i~iwd~~~  210 (222)
                      |++|++||+..                                      .+|++|+.|++|++||++.
T Consensus       122 d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~  189 (297)
T 2pm7_B          122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS  189 (297)
T ss_dssp             TSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEET
T ss_pred             CCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC
Confidence            99999999741                                      2799999999999999873

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.93  E-value=1.1e-23  Score=172.90  Aligned_cols=175  Identities=26%  Similarity=0.377  Sum_probs=131.5

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCC--cccceeeeeeeeeEeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPL--CRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  103 (222)
                      |.+.|.+++|+|+++.|++++.|++|++||+.++..+..+.  +|... +..   +.+.+.  ....+.......+..|+
T Consensus       153 h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~--~h~~~-v~~---~~~~~~~~g~~l~sgs~Dg~v~~wd  226 (354)
T 2pbi_B          153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH--GHGAD-VLC---LDLAPSETGNTFVSGGCDKKAMVWD  226 (354)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSC-EEE---EEECCCSSCCEEEEEETTSCEEEEE
T ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc--CCCCC-eEE---EEEEeCCCCCEEEEEeCCCeEEEEE
Confidence            37889999999999999999999999999999888776652  22221 111   111111  11222233334455554


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccC--CccEEEEEEcCCCCEEEEeeCC
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESH--TRYVTCCTFSCDDSLLASGSND  181 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~--~~~V~~~~~s~~~~~l~s~s~D  181 (222)
                      ... ......+..|...|++++|+|+++++++|+.|++|++||+++.+.+..+..+  ...+.+++|+|++++|++++.|
T Consensus       227 ~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d  305 (354)
T 2pbi_B          227 MRS-GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND  305 (354)
T ss_dssp             TTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CCC-CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC
Confidence            321 1122345679999999999999999999999999999999988777666543  3468999999999999999999


Q ss_pred             CeEEEEeCC-----------------------CCeEEEeeCCCcEEEEe
Q psy16881        182 KTVTIWDML-----------------------ATLLASGSNDKTVTIWD  207 (222)
Q Consensus       182 ~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd  207 (222)
                      ++|++||+.                       +.+|++|+.|++|++|+
T Consensus       306 ~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          306 YTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            999999973                       35799999999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.93  E-value=1.7e-24  Score=178.07  Aligned_cols=181  Identities=16%  Similarity=0.245  Sum_probs=128.4

Q ss_pred             eeccceEEEEEcCCCCeEEEecC------CCeEEEEeCCCCceEEeecc--CCCcceeeccceecCccCCcccceeeeee
Q psy16881         25 HIGSNMRCVRFSPDTRLLATGGD------DETVTVWRSDDLSLIMETND--RGHTQGRIEGWGRVPACPLCRTRVFSTFV   96 (222)
Q Consensus        25 ~~~~~v~~l~~spdg~~l~tgs~------Dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (222)
                      .|...|.+++|||||++||+|+.      |++|++|+..++........  .++... +..   +.+.+.. ..+.+...
T Consensus        40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~-V~~---~~~s~d~-~~l~~s~d  114 (357)
T 4g56_B           40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAG-VTD---VAWVSEK-GILVASDS  114 (357)
T ss_dssp             CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSC-EEE---EEEETTT-EEEEEETT
T ss_pred             cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCC-EEE---EEEcCCC-CEEEEECC
Confidence            35788999999999999999997      78899998776543211100  011111 111   1122221 12222333


Q ss_pred             eeeEeeeeeeecc---CCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCC
Q psy16881         97 KQIIPTRVGVYGQ---DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS  173 (222)
Q Consensus        97 ~~~~~~~~~~~~~---~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~  173 (222)
                      ..+..|++.....   ......+|...|++++|+|++++|++|+.|+.|++||+++++++..+.+|...|++++|++++.
T Consensus       115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~  194 (357)
T 4g56_B          115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD  194 (357)
T ss_dssp             SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS
T ss_pred             CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC
Confidence            3455555322111   1112346899999999999999999999999999999999999999999999999999999874


Q ss_pred             -EEEEeeCCCeEEEEeCC--------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        174 -LLASGSNDKTVTIWDML--------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       174 -~l~s~s~D~~i~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                       ++++++.|++|++||+.                          ..++++|+.|+.|++||++.
T Consensus       195 ~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~  258 (357)
T 4g56_B          195 TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN  258 (357)
T ss_dssp             SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred             ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC
Confidence             78899999999999973                          24789999999999999973

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.93  E-value=1.3e-24  Score=179.91  Aligned_cols=182  Identities=23%  Similarity=0.343  Sum_probs=134.1

Q ss_pred             eccceEEEEEcCCC-CeEEEecCCCeEEEEeCCCCceEEeecc---CCCcceeeccceecCccC-CcccceeeeeeeeeE
Q psy16881         26 IGSNMRCVRFSPDT-RLLATGGDDETVTVWRSDDLSLIMETND---RGHTQGRIEGWGRVPACP-LCRTRVFSTFVKQII  100 (222)
Q Consensus        26 ~~~~v~~l~~spdg-~~l~tgs~Dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  100 (222)
                      |.+.|.++.|+|++ .+|++|+.|++|++||+.++..+..+..   .+|.... ..   +.... .....+.......+.
T Consensus       156 h~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v-~~---~~~~~~~~~~l~sgs~D~~v~  231 (380)
T 3iz6_a          156 HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV-LS---LSINSLNANMFISGSCDTTVR  231 (380)
T ss_dssp             CSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE-EE---EEECSSSCCEEEEEETTSCEE
T ss_pred             CCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe-EE---EEeecCCCCEEEEEECCCeEE
Confidence            36778899999974 5799999999999999998877655421   1222111 11   11111 111122233334555


Q ss_pred             eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCc-------cEEEEEEcCCCC
Q psy16881        101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTR-------YVTCCTFSCDDS  173 (222)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~-------~V~~~~~s~~~~  173 (222)
                      .|+..........+.+|...|++++|+|++++|++|+.||+|++||+++++.+..+..+..       .|.+++|+|+|+
T Consensus       232 ~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  311 (380)
T 3iz6_a          232 LWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR  311 (380)
T ss_dssp             EEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS
T ss_pred             EEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCC
Confidence            5654322233445678999999999999999999999999999999999988877755432       388999999999


Q ss_pred             EEEEeeCCCeEEEEeCC---------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        174 LLASGSNDKTVTIWDML---------------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       174 ~l~s~s~D~~i~lwd~~---------------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      +|++|+.|+.|++||+.                           +.+|++|+.|++|++|++++.
T Consensus       312 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          312 LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence            99999999999999962                           357999999999999999853

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.93  E-value=3.8e-24  Score=176.51  Aligned_cols=176  Identities=16%  Similarity=0.166  Sum_probs=125.4

Q ss_pred             cceEEEEEcCCCCeEE--EecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         28 SNMRCVRFSPDTRLLA--TGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~--tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      ..+++++|||||++|+  +++.|++|+|||+.+.....+.....    .+..   +.++++........ .+.+..+...
T Consensus       134 ~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~----~V~~---v~fspdg~~l~s~s-~~~~~~~~~~  205 (365)
T 4h5i_A          134 DYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRG----EVKD---LHFSTDGKVVAYIT-GSSLEVISTV  205 (365)
T ss_dssp             CCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSS----CCCE---EEECTTSSEEEEEC-SSCEEEEETT
T ss_pred             cCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCC----ceEE---EEEccCCceEEecc-ceeEEEEEec
Confidence            3488999999999876  45579999999999988776653211    1211   22333333222222 2222222211


Q ss_pred             eecc-CCccccccCCCEEEEEEcCCCCEEEEEeCCC----cEEEEeCCCCce----EEEeccCCccEEEEEEcCCCCEEE
Q psy16881        106 VYGQ-DSETVGRHTSAVTSVRFNHKSSLLVSGSVDK----TVKLWDVPSLTC----IKTLESHTRYVTCCTFSCDDSLLA  176 (222)
Q Consensus       106 ~~~~-~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg----~I~iwd~~~~~~----~~~~~~~~~~V~~~~~s~~~~~l~  176 (222)
                      .... .......|...|.+++|+|+++++++++.|+    .+++||+.....    ...+.+|...|++++|+|+|++||
T Consensus       206 ~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~la  285 (365)
T 4h5i_A          206 TGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAV  285 (365)
T ss_dssp             TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEE
T ss_pred             cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceE
Confidence            0000 0112345788899999999999999999887    688899876543    346778999999999999999999


Q ss_pred             EeeCCCeEEEEeCC------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        177 SGSNDKTVTIWDML------------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       177 s~s~D~~i~lwd~~------------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      +|+.|++|+|||+.                        +.+|||+|.|++|+|||+..+
T Consensus       286 sgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          286 LASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99999999999984                        468999999999999998643

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.93  E-value=1.3e-23  Score=174.66  Aligned_cols=173  Identities=29%  Similarity=0.503  Sum_probs=130.0

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeec
Q psy16881         29 NMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYG  108 (222)
Q Consensus        29 ~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (222)
                      .|++++|+|+|++|++|+.|++|++||+.+.+....+  .+|... +..   +.+.+.....+.......+..|+... .
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~--~~h~~~-v~~---~~~~p~~~~l~s~s~d~~v~iwd~~~-~  197 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL--QGHEQD-IYS---LDYFPSGDKLVSGSGDRTVRIWDLRT-G  197 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--CCCSSC-EEE---EEECTTSSEEEEEETTSEEEEEETTT-T
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE--ccCCCC-EEE---EEEcCCCCEEEEecCCCcEEEEECCC-C
Confidence            4899999999999999999999999999988776655  233322 111   12222222233333344455554311 0


Q ss_pred             cCCccccccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceEEEe-------ccCCccEEEEEEcCCCCEEEEeeC
Q psy16881        109 QDSETVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTCIKTL-------ESHTRYVTCCTFSCDDSLLASGSN  180 (222)
Q Consensus       109 ~~~~~~~~h~~~i~~l~~~~-~~~~l~sg~~dg~I~iwd~~~~~~~~~~-------~~~~~~V~~~~~s~~~~~l~s~s~  180 (222)
                      .....+ .+...+.+++++| +++++++|+.|+.|++||+++++.+..+       .+|...|.+++|+|++++|++++.
T Consensus       198 ~~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~  276 (393)
T 1erj_A          198 QCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL  276 (393)
T ss_dssp             EEEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             eeEEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence            111112 3567799999998 7899999999999999999998877666       578899999999999999999999


Q ss_pred             CCeEEEEeCC-----------------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        181 DKTVTIWDML-----------------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       181 D~~i~lwd~~-----------------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      |++|++||+.                                   ..++++++.|+.|++||++
T Consensus       277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~  340 (393)
T 1erj_A          277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK  340 (393)
T ss_dssp             TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred             CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            9999999973                                   2469999999999999997

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.92  E-value=1.1e-23  Score=182.13  Aligned_cols=172  Identities=35%  Similarity=0.508  Sum_probs=129.9

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |...|++++|+|+|++|++++.|++|++|+.. ++......  ++... +..   +.+.+.....+.......+..|+. 
T Consensus       384 ~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~--~~~~~-v~~---~~~s~d~~~l~~~~~d~~v~~w~~-  455 (577)
T 2ymu_A          384 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT--GHSSS-VWG---VAFSPDDQTIASASDDKTVKLWNR-  455 (577)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEE--CCSSC-EEE---EEECTTSSEEEEEETTSEEEEEET-
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEec--CCCCC-eEE---EEECCCCCEEEEEcCCCEEEEEEC-
Confidence            47889999999999999999999999999964 34433331  22211 111   122222332222233333444431 


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                       .......+.+|...|.+++|+|+++++++++.|+.|++||. +++++..+.+|...|++++|+|++++|++++.|+.|+
T Consensus       456 -~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~  533 (577)
T 2ymu_A          456 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK  533 (577)
T ss_dssp             -TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred             -CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEE
Confidence             11222345679999999999999999999999999999995 5788899999999999999999999999999999999


Q ss_pred             EEeCC----------------------CCeEEEeeCCCcEEEEe
Q psy16881        186 IWDML----------------------ATLLASGSNDKTVTIWD  207 (222)
Q Consensus       186 lwd~~----------------------~~~l~s~~~d~~i~iwd  207 (222)
                      +||..                      ..+|++++.|++|++||
T Consensus       534 lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          534 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            99963                      35799999999999997

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.92  E-value=2.1e-23  Score=173.36  Aligned_cols=153  Identities=29%  Similarity=0.532  Sum_probs=121.5

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.|.+++|+|||++||+|+ |+++++|++.++..+......  ......                        .   .
T Consensus        63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~--~~~~~~------------------------~---~  112 (393)
T 1erj_A           63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDD--SAANKD------------------------P---E  112 (393)
T ss_dssp             CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------------------------
T ss_pred             CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCc--cccccc------------------------c---c
Confidence            478899999999999999987 689999999887766544211  000000                        0   0


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                        .........+...|.+++|+|+++++++|+.|+.|+|||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|+
T Consensus       113 --~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~  190 (393)
T 1erj_A          113 --NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR  190 (393)
T ss_dssp             ----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             --cccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEE
Confidence              000000112345699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        186 IWDML-----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       186 lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +||+.                       ..++++++.|+.|++||+++
T Consensus       191 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~  238 (393)
T 1erj_A          191 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET  238 (393)
T ss_dssp             EEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred             EEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence            99974                       35799999999999999974

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.92  E-value=1.2e-24  Score=175.83  Aligned_cols=138  Identities=20%  Similarity=0.295  Sum_probs=115.2

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.|.+++|+|+|++||+|+.|++|++||+.++.....                                         
T Consensus        12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~-----------------------------------------   50 (316)
T 3bg1_A           12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI-----------------------------------------   50 (316)
T ss_dssp             --CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEE-----------------------------------------
T ss_pred             ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE-----------------------------------------
Confidence            378899999999999999999999999999754321000                                         


Q ss_pred             eeccCCccccccCCCEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCC--ceEEEeccCCccEEEEEEcCC--CCEEEEee
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNH--KSSLLVSGSVDKTVKLWDVPSL--TCIKTLESHTRYVTCCTFSCD--DSLLASGS  179 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~~~~V~~~~~s~~--~~~l~s~s  179 (222)
                            ..+.+|...|.+++|++  ++++|++|+.|++|++||++++  +.+..+.+|...|.+++|+|+  +.+|++++
T Consensus        51 ------~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs  124 (316)
T 3bg1_A           51 ------ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGS  124 (316)
T ss_dssp             ------EEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEEC
T ss_pred             ------EEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEc
Confidence                  01346999999999975  4789999999999999999876  456778899999999999998  78999999


Q ss_pred             CCCeEEEEeCCC-------------------------------------------CeEEEeeCCCcEEEEeCCC
Q psy16881        180 NDKTVTIWDMLA-------------------------------------------TLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       180 ~D~~i~lwd~~~-------------------------------------------~~l~s~~~d~~i~iwd~~~  210 (222)
                      .|++|++||+..                                           .+|++|+.|++|++||++.
T Consensus       125 ~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~  198 (316)
T 3bg1_A          125 SDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE  198 (316)
T ss_dssp             SSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECT
T ss_pred             CCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCC
Confidence            999999998631                                           3689999999999999973

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.92  E-value=1.5e-23  Score=181.28  Aligned_cols=118  Identities=38%  Similarity=0.578  Sum_probs=103.6

Q ss_pred             EEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee
Q psy16881         18 LILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK   97 (222)
Q Consensus        18 ~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (222)
                      .+|.+|   .+.|++++|||||++||+|+.|++|+|||.. ++.+.                                  
T Consensus        10 ~~L~GH---~~~V~~~a~spdg~~las~~~d~~v~iWd~~-~~~~~----------------------------------   51 (577)
T 2ymu_A           10 NRLEAH---SSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ----------------------------------   51 (577)
T ss_dssp             EEECCC---SSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEE----------------------------------
T ss_pred             eEECCC---CCcEEEEEECCCCCEEEEEeCCCEEEEEECC-CCEEE----------------------------------
Confidence            455666   8899999999999999999999999999853 22211                                  


Q ss_pred             eeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881         98 QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s  177 (222)
                                     .+.+|...|++++|+|++++|++++.|+.|+|||. +++++..+.+|...|.+++|+|++++|++
T Consensus        52 ---------------~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~  115 (577)
T 2ymu_A           52 ---------------TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS  115 (577)
T ss_dssp             ---------------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             ---------------EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEE
Confidence                           12468999999999999999999999999999996 57788899999999999999999999999


Q ss_pred             eeCCCeEEEEeC
Q psy16881        178 GSNDKTVTIWDM  189 (222)
Q Consensus       178 ~s~D~~i~lwd~  189 (222)
                      ++.|+.+++|+.
T Consensus       116 ~~~d~~~~~~~~  127 (577)
T 2ymu_A          116 ASDDKTVKLWNR  127 (577)
T ss_dssp             EETTSCEEEEET
T ss_pred             EcCCCceeeccc
Confidence            999999999985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.92  E-value=7.1e-24  Score=171.34  Aligned_cols=178  Identities=24%  Similarity=0.303  Sum_probs=127.4

Q ss_pred             eccceEEEEEcC--CCCeEEEecCCCeEEEEeCCCCc--eEEeeccCCCcceeeccceecCccCC--cccceeeeeeeee
Q psy16881         26 IGSNMRCVRFSP--DTRLLATGGDDETVTVWRSDDLS--LIMETNDRGHTQGRIEGWGRVPACPL--CRTRVFSTFVKQI   99 (222)
Q Consensus        26 ~~~~v~~l~~sp--dg~~l~tgs~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   99 (222)
                      |.+.|.+++|+|  ++++|++|+.|++|++||+.++.  .....  .+|... +..   +.+.+.  ....+.......+
T Consensus        56 H~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~--~~h~~~-V~~---v~~~p~~~g~~lasgs~D~~i  129 (316)
T 3bg1_A           56 HEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH--AGHDSS-VNS---VCWAPHDYGLILACGSSDGAI  129 (316)
T ss_dssp             CSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE--CCCSSC-CCE---EEECCTTTCSCEEEECSSSCE
T ss_pred             CCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc--cCCCCc-eEE---EEECCCCCCcEEEEEcCCCCE
Confidence            478899999986  48999999999999999998753  22222  222211 111   112222  1112222333344


Q ss_pred             Eeeeeeeecc--CCccccccCCCEEEEEEcCC-----------------CCEEEEEeCCCcEEEEeCCCC---ceEEEec
Q psy16881        100 IPTRVGVYGQ--DSETVGRHTSAVTSVRFNHK-----------------SSLLVSGSVDKTVKLWDVPSL---TCIKTLE  157 (222)
Q Consensus       100 ~~~~~~~~~~--~~~~~~~h~~~i~~l~~~~~-----------------~~~l~sg~~dg~I~iwd~~~~---~~~~~~~  157 (222)
                      ..|+......  ....+.+|...|.+++|+|+                 +++|++|+.|+.|++||++..   +++..+.
T Consensus       130 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~  209 (316)
T 3bg1_A          130 SLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE  209 (316)
T ss_dssp             EEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB
T ss_pred             EEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc
Confidence            4554321110  12345678899999999987                 468999999999999999754   4667788


Q ss_pred             cCCccEEEEEEcCCC----CEEEEeeCCCeEEEEeCC---------------------------CCeEEEeeCCCcEEEE
Q psy16881        158 SHTRYVTCCTFSCDD----SLLASGSNDKTVTIWDML---------------------------ATLLASGSNDKTVTIW  206 (222)
Q Consensus       158 ~~~~~V~~~~~s~~~----~~l~s~s~D~~i~lwd~~---------------------------~~~l~s~~~d~~i~iw  206 (222)
                      +|...|.+++|+|++    .+|++++.|++|++||+.                           ..+||+++.|++|++|
T Consensus       210 ~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw  289 (316)
T 3bg1_A          210 AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW  289 (316)
T ss_dssp             CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred             cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence            999999999999986    899999999999999863                           2469999999999999


Q ss_pred             eCC
Q psy16881        207 DMR  209 (222)
Q Consensus       207 d~~  209 (222)
                      +..
T Consensus       290 ~~~  292 (316)
T 3bg1_A          290 KES  292 (316)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            976

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.92  E-value=4.3e-23  Score=183.03  Aligned_cols=180  Identities=27%  Similarity=0.324  Sum_probs=133.9

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |...|.+++|+|+|++|++|+.||+|++||+.++.....+  .+|.... ..   +.+.+.....+.......+..|+..
T Consensus       429 h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~--~~h~~~v-~~---~~~s~~~~~l~s~s~D~~i~iwd~~  502 (694)
T 3dm0_A          429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF--VGHTKDV-LS---VAFSLDNRQIVSASRDRTIKLWNTL  502 (694)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--ECCSSCE-EE---EEECTTSSCEEEEETTSCEEEECTT
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEE--eCCCCCE-EE---EEEeCCCCEEEEEeCCCEEEEEECC
Confidence            3788999999999999999999999999999988776655  2333221 11   2222233333333344445555421


Q ss_pred             e--eccCCccccccCCCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCC
Q psy16881        106 V--YGQDSETVGRHTSAVTSVRFNHKS--SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSND  181 (222)
Q Consensus       106 ~--~~~~~~~~~~h~~~i~~l~~~~~~--~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D  181 (222)
                      .  .........+|...|.+++|+|++  ..+++++.|+.|++||+++.++...+.+|...|.+++|+|++++|++++.|
T Consensus       503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~D  582 (694)
T 3dm0_A          503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKD  582 (694)
T ss_dssp             SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence            0  000111234688999999999986  589999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCC---------------------CeEEEeeCCCcEEEEeCCCC
Q psy16881        182 KTVTIWDMLA---------------------TLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       182 ~~i~lwd~~~---------------------~~l~s~~~d~~i~iwd~~~~  211 (222)
                      ++|++||+..                     ..+++++.++.|++||+++.
T Consensus       583 g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~  633 (694)
T 3dm0_A          583 GVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESK  633 (694)
T ss_dssp             SBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTT
T ss_pred             CeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCC
Confidence            9999999841                     22344455778999999843

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.92  E-value=3.1e-23  Score=171.02  Aligned_cols=161  Identities=19%  Similarity=0.180  Sum_probs=111.0

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee----eeEe
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK----QIIP  101 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  101 (222)
                      +...|.+++|+|||++|++++.++ +.+|+..++..........+... +..   +.+.+............    .+..
T Consensus       175 ~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~-v~~---v~fspdg~~l~~~s~d~~~~~~i~~  249 (365)
T 4h5i_A          175 TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWS-LSK---INFIADDTVLIAASLKKGKGIVLTK  249 (365)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEE-EEE---EEEEETTEEEEEEEESSSCCEEEEE
T ss_pred             CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCC-EEE---EEEcCCCCEEEEEecCCcceeEEee
Confidence            457799999999999999998655 55666655555443322222211 111   11222222111111111    1222


Q ss_pred             eeeee---eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe-ccCCccEEEEEEcCCCCEEEE
Q psy16881        102 TRVGV---YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL-ESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       102 ~~~~~---~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~-~~~~~~V~~~~~s~~~~~l~s  177 (222)
                      ++...   .......+.+|...|++++|+|+|++|++|+.|++|+|||+++++++..+ .+|...|++++|||+|++|||
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS  329 (365)
T 4h5i_A          250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVAS  329 (365)
T ss_dssp             EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEE
T ss_pred             cccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEE
Confidence            22110   01112245578899999999999999999999999999999999998875 789999999999999999999


Q ss_pred             eeCCCeEEEEeCCC
Q psy16881        178 GSNDKTVTIWDMLA  191 (222)
Q Consensus       178 ~s~D~~i~lwd~~~  191 (222)
                      +|.|++|+|||+..
T Consensus       330 ~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          330 VSAANTIHIIKLPL  343 (365)
T ss_dssp             EETTSEEEEEECCT
T ss_pred             EeCCCeEEEEEcCC
Confidence            99999999999964

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.91  E-value=6.6e-23  Score=164.90  Aligned_cols=157  Identities=18%  Similarity=0.209  Sum_probs=111.0

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc----eEEeeccCCCcceeeccceecCccCC--cccceeeeeeeeeE
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS----LIMETNDRGHTQGRIEGWGRVPACPL--CRTRVFSTFVKQII  100 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  100 (222)
                      .+.|.+++|+|++++|++|+.||+|++|++.+..    ....+  .++... +..   +.+.+.  ....+.......+.
T Consensus        11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~-v~~---~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A           11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW--RAHDSS-IVA---IDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE--ECCSSC-EEE---EEECCGGGCSEEEEEETTSCEE
T ss_pred             ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee--ccCCCc-EEE---EEEcCCCCCCEEEEEcCCCeEE
Confidence            7889999999999999999999999999998653    22222  122211 111   112221  12222233334455


Q ss_pred             eeeeeeec--------cCCccccccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCc-------------------
Q psy16881        101 PTRVGVYG--------QDSETVGRHTSAVTSVRFNHK--SSLLVSGSVDKTVKLWDVPSLT-------------------  151 (222)
Q Consensus       101 ~~~~~~~~--------~~~~~~~~h~~~i~~l~~~~~--~~~l~sg~~dg~I~iwd~~~~~-------------------  151 (222)
                      .|+.....        .....+..|...|.+++|+|+  ++++++++.||.|++||+++++                   
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            55532111        112345578999999999999  9999999999999999986543                   


Q ss_pred             -----------------------------------------eEEEeccCCccEEEEEEcCCC----CEEEEeeCCCeEEE
Q psy16881        152 -----------------------------------------CIKTLESHTRYVTCCTFSCDD----SLLASGSNDKTVTI  186 (222)
Q Consensus       152 -----------------------------------------~~~~~~~~~~~V~~~~~s~~~----~~l~s~s~D~~i~l  186 (222)
                                                               .+..+.+|...|.+++|+|++    ++|++++.|+.|++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence                                                     144556788999999999998    89999999999999


Q ss_pred             EeC
Q psy16881        187 WDM  189 (222)
Q Consensus       187 wd~  189 (222)
                      ||+
T Consensus       245 wd~  247 (351)
T 3f3f_A          245 FKI  247 (351)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            986

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.91  E-value=1.4e-22  Score=167.00  Aligned_cols=177  Identities=16%  Similarity=0.221  Sum_probs=131.6

Q ss_pred             eccceEEEEEcCCC-CeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCc-ccceeeeeeeeeEeee
Q psy16881         26 IGSNMRCVRFSPDT-RLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLC-RTRVFSTFVKQIIPTR  103 (222)
Q Consensus        26 ~~~~v~~l~~spdg-~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  103 (222)
                      |...|.+++|+|++ ++|++|+.||+|++|++.+..........++... +..   +.+.+.. ...+.......+..|+
T Consensus        72 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~-v~~---~~~~~~~~~~l~s~~~d~~i~iwd  147 (383)
T 3ei3_B           72 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDA-ITG---MKFNQFNTNQLFVSSIRGATTLRD  147 (383)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCB-EEE---EEEETTEEEEEEEEETTTEEEEEE
T ss_pred             CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCc-eeE---EEeCCCCCCEEEEEeCCCEEEEEE
Confidence            37889999999999 8999999999999999997776655432233222 111   1112211 1122222233444444


Q ss_pred             eeeeccCCccc---cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCC-EEEEee
Q psy16881        104 VGVYGQDSETV---GRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS-LLASGS  179 (222)
Q Consensus       104 ~~~~~~~~~~~---~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~-~l~s~s  179 (222)
                      ..  ......+   ..|...|.+++|+|+++++++|+.|+.|++||+ +++.+..+.+|...|.+++|+|+++ +|++++
T Consensus       148 ~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  224 (383)
T 3ei3_B          148 FS--GSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSS  224 (383)
T ss_dssp             TT--SCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEE
T ss_pred             CC--CCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEe
Confidence            32  1111112   234578999999999999999999999999999 4778888999999999999999999 999999


Q ss_pred             CCCeEEEEeCC---------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        180 NDKTVTIWDML---------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       180 ~D~~i~lwd~~---------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      .|+.|++||+.                           ..++++++.|+.|++||++
T Consensus       225 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~  281 (383)
T 3ei3_B          225 VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY  281 (383)
T ss_dssp             TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred             CCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence            99999999974                           2479999999999999997

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.91  E-value=5.9e-24  Score=174.64  Aligned_cols=178  Identities=16%  Similarity=0.139  Sum_probs=128.0

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCC--ceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDL--SLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      .+.|.+++|+|+|++|++|+.||+|++|++.+.  .....+  .+|... +..   +.+.+.....+.......+..|+.
T Consensus        11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~--~~h~~~-v~~---~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C           11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF--SDHDKI-VTC---VDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB--CCCSSC-EEE---EEECTTTCCEEEEETTSSEEEC--
T ss_pred             CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE--ecCCce-EEE---EEEeCCCCEEEEEeCCCeEEEEEc
Confidence            578999999999999999999999999999876  333322  222221 111   122222222333333344555553


Q ss_pred             eeec--cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---eEEEecc-CCccEEEEEEcCCCCEEEEe
Q psy16881        105 GVYG--QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT---CIKTLES-HTRYVTCCTFSCDDSLLASG  178 (222)
Q Consensus       105 ~~~~--~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~---~~~~~~~-~~~~V~~~~~s~~~~~l~s~  178 (222)
                      ....  .....+.+|...|.+++|+|++++|++++.|+.|++||+++++   +...+.. |...|.+++|+|++++|+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~  164 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG  164 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence            2211  1223455789999999999999999999999999999998876   4677777 99999999999999999999


Q ss_pred             eCCCeEEEEeCC----------------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        179 SNDKTVTIWDML----------------------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       179 s~D~~i~lwd~~----------------------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +.|++|++||+.                                        ..++++++.|+.|++||++.
T Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~  236 (377)
T 3dwl_C          165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA  236 (377)
T ss_dssp             ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred             eCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            999999999962                                        34699999999999999984

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.91  E-value=3.6e-23  Score=174.03  Aligned_cols=179  Identities=17%  Similarity=0.189  Sum_probs=127.0

Q ss_pred             ccceEEEEEcC-CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCccc-ceeeeeeeeeEeeee
Q psy16881         27 GSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT-RVFSTFVKQIIPTRV  104 (222)
Q Consensus        27 ~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  104 (222)
                      ...|+||+|+| ++++||+|+.||+|+|||+.+..........+|... +..   +.+.+.... .+.+.....+..|+.
T Consensus       119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~-V~~---l~f~p~~~~~l~s~s~D~~v~iwd~  194 (435)
T 4e54_B          119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGS-ITG---LKFNPLNTNQFYASSMEGTTRLQDF  194 (435)
T ss_dssp             SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCC-CCE---EEECSSCTTEEEEECSSSCEEEEET
T ss_pred             CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCC-EEE---EEEeCCCCCEEEEEeCCCEEEEeec
Confidence            67799999999 567999999999999999987654433332344322 221   222222222 222233344555543


Q ss_pred             eeec-cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCC-EEEEeeCCC
Q psy16881        105 GVYG-QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS-LLASGSNDK  182 (222)
Q Consensus       105 ~~~~-~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~-~l~s~s~D~  182 (222)
                      .... ........+...+.+++|++++++|++|+.||.|++||++. +.+..+.+|...|.+++|+|++. +|++++.|+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~  273 (435)
T 4e54_B          195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQ  273 (435)
T ss_dssp             TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred             cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcc
Confidence            1100 00001112345678899999999999999999999999874 55677889999999999999876 788999999


Q ss_pred             eEEEEeCC--------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        183 TVTIWDML--------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       183 ~i~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      .|++||+.                          ..+|++++.|+.|++||++.
T Consensus       274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~  327 (435)
T 4e54_B          274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ  327 (435)
T ss_dssp             BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS
T ss_pred             eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC
Confidence            99999973                          35799999999999999973

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.91  E-value=3.1e-23  Score=174.43  Aligned_cols=159  Identities=19%  Similarity=0.241  Sum_probs=112.3

Q ss_pred             eccceEEEEEcC-CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         26 IGSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        26 ~~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      |.+.|.+|+|+| ++++|++|+.||+|++||+++........... ....+...   .+.+.....+.+.....+..|+.
T Consensus       163 H~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~l~~g~~dg~i~~wd~  238 (435)
T 4e54_B          163 AGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDT-INIWFCSL---DVSASSRMVVTGDNVGNVILLNM  238 (435)
T ss_dssp             SSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSS-CSCCCCCE---EEETTTTEEEEECSSSBEEEEES
T ss_pred             CCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCC-CCccEEEE---EECCCCCEEEEEeCCCcEeeecc
Confidence            478899999998 68899999999999999997654332221111 11111111   11112222222333334555543


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEE---EeccCCccEEEEEEcCCCCEEEEeeC
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIK---TLESHTRYVTCCTFSCDDSLLASGSN  180 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~---~~~~~~~~V~~~~~s~~~~~l~s~s~  180 (222)
                        .+.....+.+|...|++++|+|+++ ++++|+.|+.|+|||+++.+...   ...+|...|.+++|+|++++|++++.
T Consensus       239 --~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~  316 (435)
T 4e54_B          239 --DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ  316 (435)
T ss_dssp             --SSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES
T ss_pred             --CcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC
Confidence              1233445678999999999999886 88999999999999998765432   33578999999999999999999999


Q ss_pred             CCeEEEEeCC
Q psy16881        181 DKTVTIWDML  190 (222)
Q Consensus       181 D~~i~lwd~~  190 (222)
                      |+.|++||+.
T Consensus       317 D~~i~iwd~~  326 (435)
T 4e54_B          317 KSEIRVYSAS  326 (435)
T ss_dssp             SSCEEEEESS
T ss_pred             CCEEEEEECC
Confidence            9999999974

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.91  E-value=3.4e-22  Score=161.32  Aligned_cols=180  Identities=24%  Similarity=0.284  Sum_probs=130.4

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |...|.+++|+|+|++|++|+.|+.|++|+...................      ..........+.......+..++..
T Consensus        85 h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~s~s~d~~~~~~d~~  158 (340)
T 4aow_A           85 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS------VAFSSDNRQIVSGSRDKTIKLWNTL  158 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE------EEECTTSSCEEEEETTSCEEEECTT
T ss_pred             CCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeE------EEEeecCccceeecCCCeEEEEEeC
Confidence            3788999999999999999999999999999877655443221111100      0011111111222222233333321


Q ss_pred             eeccCCccccccCCCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKS--SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKT  183 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~--~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~  183 (222)
                      ..........+|...+..++|++++  .++++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.|+.
T Consensus       159 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~  238 (340)
T 4aow_A          159 GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ  238 (340)
T ss_dssp             SCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             CCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence            1111112345688999999998765  57899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCC---------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        184 VTIWDML---------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       184 i~lwd~~---------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      |++||+.                     ...+++++.|+.|++||+++.
T Consensus       239 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~  287 (340)
T 4aow_A          239 AMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGK  287 (340)
T ss_dssp             EEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTT
T ss_pred             EEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCC
Confidence            9999985                     235777888999999999854

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.91  E-value=1.7e-22  Score=177.05  Aligned_cols=178  Identities=22%  Similarity=0.286  Sum_probs=132.4

Q ss_pred             eccceEEEEEcCCCC-eEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         26 IGSNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        26 ~~~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      |...|.+++|+|+++ +|++|+.|++|++||..+.+....+  .+|... +..   +.+.+.....+.+.....+..|+.
T Consensus       146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l--~~H~~~-V~~---v~fspdg~~las~s~D~~i~lwd~  219 (611)
T 1nr0_A          146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF--GEHTKF-VHS---VRYNPDGSLFASTGGDGTIVLYNG  219 (611)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE--CCCSSC-EEE---EEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee--ccccCc-eEE---EEECCCCCEEEEEECCCcEEEEEC
Confidence            478899999999997 5999999999999998877766554  333322 111   223333333333344445555542


Q ss_pred             eeeccCCccc-------cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE-----------------------
Q psy16881        105 GVYGQDSETV-------GRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIK-----------------------  154 (222)
Q Consensus       105 ~~~~~~~~~~-------~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~-----------------------  154 (222)
                      .. +.....+       .+|...|.+++|+|++++|++++.|++|++||+++++++.                       
T Consensus       220 ~~-g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  298 (611)
T 1nr0_A          220 VD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV  298 (611)
T ss_dssp             TT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEE
T ss_pred             CC-CcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEE
Confidence            11 0001111       2699999999999999999999999999999998776543                       


Q ss_pred             --------------------EeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCCC-----------------------
Q psy16881        155 --------------------TLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA-----------------------  191 (222)
Q Consensus       155 --------------------~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~-----------------------  191 (222)
                                          .+.+|...|.+++|+|++++|++++.|++|++||+.+                       
T Consensus       299 s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~  378 (611)
T 1nr0_A          299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK  378 (611)
T ss_dssp             EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT
T ss_pred             EEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCC
Confidence                                3357888999999999999999999999999999742                       


Q ss_pred             CeEEEeeCCCcEEEEeCCC
Q psy16881        192 TLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       192 ~~l~s~~~d~~i~iwd~~~  210 (222)
                      ..+++++.|+.+++|++.+
T Consensus       379 ~~l~s~s~d~~v~~w~~~~  397 (611)
T 1nr0_A          379 GDLFTVSWDDHLKVVPAGG  397 (611)
T ss_dssp             SCEEEEETTTEEEEECSSS
T ss_pred             CcEEEEEcCCceEEeecCC
Confidence            3578999999999999874

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.91  E-value=7e-22  Score=158.96  Aligned_cols=182  Identities=20%  Similarity=0.272  Sum_probs=134.1

Q ss_pred             eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEE---eeccCCCcceeeccceecCccCCcccceeeeeeeeeEe
Q psy16881         25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIM---ETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIP  101 (222)
Q Consensus        25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (222)
                      .|.+.|.+++|+|++++|++++ ||+|++|++.+.....   ......+. ..+..   +.+.+.....+.......+..
T Consensus        49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~v~~---~~~~~~~~~l~~~~~d~~i~~  123 (337)
T 1gxr_A           49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD-NYIRS---CKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTT-SBEEE---EEECTTSSEEEEEESSSEEEE
T ss_pred             cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCC-CcEEE---EEEcCCCCEEEEEcCCCcEEE
Confidence            3478899999999999999998 9999999998654221   11111111 11111   112222222222333334444


Q ss_pred             eeeeeec-cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeC
Q psy16881        102 TRVGVYG-QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN  180 (222)
Q Consensus       102 ~~~~~~~-~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~  180 (222)
                      ++..... .....+..|...|.+++|+|+++++++++.||.|++||+++++.+..+..|...|.+++|+|++++|++++.
T Consensus       124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  203 (337)
T 1gxr_A          124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL  203 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence            4432111 012345568889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCC----------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        181 DKTVTIWDML----------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       181 D~~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      |+.|++||+.                      ..++++++.|+.|++||++..
T Consensus       204 dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~  256 (337)
T 1gxr_A          204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP  256 (337)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred             CCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence            9999999984                      357999999999999999854

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.7e-22  Score=163.87  Aligned_cols=178  Identities=19%  Similarity=0.242  Sum_probs=130.0

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCC--ceEEeeccCCCcceeeccceecCccCC--cccceeeeeeeeeEee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDL--SLIMETNDRGHTQGRIEGWGRVPACPL--CRTRVFSTFVKQIIPT  102 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  102 (222)
                      .+.|.+++|+|++++|++|+.||+|++|++...  ......  .+|... +..   +.+...  ....+.......+..|
T Consensus        11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~h~~~-v~~---~~~~~~~~~~~l~s~~~dg~v~iw   84 (379)
T 3jrp_A           11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL--TGHEGP-VWR---VDWAHPKFGTILASCSYDGKVLIW   84 (379)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE--CCCSSC-EEE---EEECCGGGCSEEEEEETTSCEEEE
T ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe--cCCCCc-EEE---EEeCCCCCCCEEEEeccCCEEEEE
Confidence            788999999999999999999999999999743  333333  223221 111   111111  1122222333345555


Q ss_pred             eeeeec-cCCccccccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCc--eEEEeccCCccEEEEEEcC-------
Q psy16881        103 RVGVYG-QDSETVGRHTSAVTSVRFNHK--SSLLVSGSVDKTVKLWDVPSLT--CIKTLESHTRYVTCCTFSC-------  170 (222)
Q Consensus       103 ~~~~~~-~~~~~~~~h~~~i~~l~~~~~--~~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~~~~V~~~~~s~-------  170 (222)
                      +..... .....+..|...|.+++|+|+  ++++++++.|+.|++||+++..  ....+.+|...|.+++|+|       
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  164 (379)
T 3jrp_A           85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  164 (379)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred             EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence            432111 122344568899999999999  8999999999999999998763  3456678999999999999       


Q ss_pred             ------CCCEEEEeeCCCeEEEEeCC------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        171 ------DDSLLASGSNDKTVTIWDML------------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       171 ------~~~~l~s~s~D~~i~lwd~~------------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                            ++.+|++++.|+.|++||+.                              ..++++++.|+.|++||++.
T Consensus       165 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             -----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence                  69999999999999999862                              35799999999999999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.90  E-value=4e-22  Score=176.86  Aligned_cols=182  Identities=24%  Similarity=0.400  Sum_probs=130.7

Q ss_pred             EEeeeeeeccceEEEEEcCCC-CeEEEecCCCeEEEEeCCCCce-----EEeeccCCCcceeeccceecCccCCccccee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDT-RLLATGGDDETVTVWRSDDLSL-----IMETNDRGHTQGRIEGWGRVPACPLCRTRVF   92 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg-~~l~tgs~Dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (222)
                      .+++|   .+.|++++|+|++ ++|++|+.|++|++|++.+...     ....  .+|.... ..   +.+.+.....+.
T Consensus       377 ~l~~H---~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~--~~h~~~v-~~---v~~s~~g~~l~s  447 (694)
T 3dm0_A          377 TMRAH---TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL--TGHSHFV-ED---VVLSSDGQFALS  447 (694)
T ss_dssp             EEECC---SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE--ECCSSCE-EE---EEECTTSSEEEE
T ss_pred             hcccC---CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccccee--cCCCCcE-EE---EEECCCCCEEEE
Confidence            34455   8889999999875 7999999999999999875321     1111  2222211 11   222222333333


Q ss_pred             eeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe---ccCCccEEEEEEc
Q psy16881         93 STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL---ESHTRYVTCCTFS  169 (222)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~---~~~~~~V~~~~~s  169 (222)
                      ......+..|+... ......+.+|...|.+++|+|+++++++++.|++|++||+.........   .+|...|.+++|+
T Consensus       448 gs~Dg~v~vwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  526 (694)
T 3dm0_A          448 GSWDGELRLWDLAA-GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS  526 (694)
T ss_dssp             EETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEEC
T ss_pred             EeCCCcEEEEECCC-CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEe
Confidence            33444555665321 1122345679999999999999999999999999999998754333222   4688899999999


Q ss_pred             CCC--CEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        170 CDD--SLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       170 ~~~--~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      |++  ..|++++.|++|++||+.                       ..++++++.|+.|++||++.
T Consensus       527 ~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~  592 (694)
T 3dm0_A          527 PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE  592 (694)
T ss_dssp             SCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred             CCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            986  689999999999999984                       35799999999999999973

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.90  E-value=4.1e-22  Score=166.78  Aligned_cols=169  Identities=20%  Similarity=0.301  Sum_probs=113.1

Q ss_pred             ccceEEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceee
Q psy16881         14 NGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFS   93 (222)
Q Consensus        14 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (222)
                      +|....+.....|...|.+|+|+|+|++||+|+.||+|++||+.+++.+....  +|.... ..+..     ........
T Consensus       134 tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~--~h~~~v-~~~s~-----~~~~l~sg  205 (420)
T 4gga_A          134 SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT--SHSARV-GSLSW-----NSYILSSG  205 (420)
T ss_dssp             TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCE-EEEEE-----ETTEEEEE
T ss_pred             CCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe--CCCCce-EEEee-----CCCEEEEE
Confidence            44444333222346789999999999999999999999999999988776653  332211 11110     01111111


Q ss_pred             eeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc----eEEEeccCCccEEEEEEc
Q psy16881         94 TFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT----CIKTLESHTRYVTCCTFS  169 (222)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~----~~~~~~~~~~~V~~~~~s  169 (222)
                      .....+..++..........+.+|...+..+.++++++++++++.|+.|++||..+++    .+.....|...|.+++|+
T Consensus       206 s~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~  285 (420)
T 4gga_A          206 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC  285 (420)
T ss_dssp             ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEEC
T ss_pred             eCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeC
Confidence            1222233332211112223456799999999999999999999999999999997654    345667788889999998


Q ss_pred             CCC-CEEEE--eeCCCeEEEEeCC
Q psy16881        170 CDD-SLLAS--GSNDKTVTIWDML  190 (222)
Q Consensus       170 ~~~-~~l~s--~s~D~~i~lwd~~  190 (222)
                      |.+ .++++  |+.|++|++||+.
T Consensus       286 p~~~~~la~~~gs~D~~I~iwd~~  309 (420)
T 4gga_A          286 PWQSNVLATGGGTSDRHIRIWNVC  309 (420)
T ss_dssp             TTCTTEEEEEECTTTCEEEEEETT
T ss_pred             CCcccEEEEEeecCCCEEEEEeCC
Confidence            865 44444  4578899999873

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.90  E-value=5.9e-22  Score=161.82  Aligned_cols=181  Identities=20%  Similarity=0.191  Sum_probs=130.7

Q ss_pred             eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      .|.+.|.+++|+|++++|++++.||+|++|++.+...........+... +..   +.+.+.....+.......+..++.
T Consensus        50 ~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-v~~---~~~~~~~~~l~~~~~d~~v~i~d~  125 (372)
T 1k8k_C           50 EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA-ARC---VRWAPNEKKFAVGSGSRVISICYF  125 (372)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSC-EEE---EEECTTSSEEEEEETTSSEEEEEE
T ss_pred             CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCc-eeE---EEECCCCCEEEEEeCCCEEEEEEe
Confidence            3478899999999999999999999999999987764443322222211 111   112222222222232333444443


Q ss_pred             eeecc---CCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC------------------CCCceEEEeccCCccE
Q psy16881        105 GVYGQ---DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV------------------PSLTCIKTLESHTRYV  163 (222)
Q Consensus       105 ~~~~~---~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~------------------~~~~~~~~~~~~~~~V  163 (222)
                      .....   .......|...|.+++|+|+++++++++.||.|++||+                  ..++++..+.+|...|
T Consensus       126 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  205 (372)
T 1k8k_C          126 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV  205 (372)
T ss_dssp             ETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred             cCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE
Confidence            21110   11122458899999999999999999999999999995                  3677888898999999


Q ss_pred             EEEEEcCCCCEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        164 TCCTFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       164 ~~~~~s~~~~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      .+++|+|++++|++++.|+.|++||+.                       ..+++++ .|+.|++||++.
T Consensus       206 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          206 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            999999999999999999999999984                       2345554 899999999976

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=4.3e-22  Score=162.71  Aligned_cols=178  Identities=24%  Similarity=0.345  Sum_probs=130.5

Q ss_pred             eccceEEEEEcCC--CCeEEEecCCCeEEEEeCCCCc--eEEeeccCCCcceeeccceecCccCC--cccceeeeeeeee
Q psy16881         26 IGSNMRCVRFSPD--TRLLATGGDDETVTVWRSDDLS--LIMETNDRGHTQGRIEGWGRVPACPL--CRTRVFSTFVKQI   99 (222)
Q Consensus        26 ~~~~v~~l~~spd--g~~l~tgs~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   99 (222)
                      |.+.|.+++|+|+  +++|++|+.||+|++||+.+..  .....  ..+... +..   +.+.+.  ....+.......+
T Consensus        54 h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~-v~~---~~~~~~~~~~~l~~~~~d~~i  127 (379)
T 3jrp_A           54 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH--AVHSAS-VNS---VQWAPHEYGPLLLVASSDGKV  127 (379)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE--CCCSSC-EEE---EEECCGGGCSEEEEEETTSEE
T ss_pred             CCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee--cCCCcc-eEE---EEeCCCCCCCEEEEecCCCcE
Confidence            4788999999987  9999999999999999998875  33322  222211 111   112222  1222223333345


Q ss_pred             Eeeeeeeec-cCCccccccCCCEEEEEEcC-------------CCCEEEEEeCCCcEEEEeCCCCc----eEEEeccCCc
Q psy16881        100 IPTRVGVYG-QDSETVGRHTSAVTSVRFNH-------------KSSLLVSGSVDKTVKLWDVPSLT----CIKTLESHTR  161 (222)
Q Consensus       100 ~~~~~~~~~-~~~~~~~~h~~~i~~l~~~~-------------~~~~l~sg~~dg~I~iwd~~~~~----~~~~~~~~~~  161 (222)
                      ..++..... .....+..|...|.+++|+|             +++++++++.||.|++||+++.+    ....+.+|..
T Consensus       128 ~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~  207 (379)
T 3jrp_A          128 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD  207 (379)
T ss_dssp             EEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred             EEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC
Confidence            555432111 11224457899999999999             68999999999999999997653    4567788999


Q ss_pred             cEEEEEEcCC---CCEEEEeeCCCeEEEEeCC----------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        162 YVTCCTFSCD---DSLLASGSNDKTVTIWDML----------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       162 ~V~~~~~s~~---~~~l~s~s~D~~i~lwd~~----------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      .|.+++|+|+   +++|++++.|+.|++||+.                            ..+|++++.|+.|++||++
T Consensus       208 ~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          208 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            9999999999   8999999999999999974                            3469999999999999987

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.90  E-value=1e-21  Score=159.74  Aligned_cols=136  Identities=21%  Similarity=0.374  Sum_probs=120.1

Q ss_pred             eccceEEEEEcCC----CCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEe
Q psy16881         26 IGSNMRCVRFSPD----TRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIP  101 (222)
Q Consensus        26 ~~~~v~~l~~spd----g~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (222)
                      +.+.|.+++|+|+    +++|++|+.||+|++||+.+++.+..                                     
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-------------------------------------  110 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH-------------------------------------  110 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE-------------------------------------
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee-------------------------------------
Confidence            4578999999999    67999999999999999875433221                                     


Q ss_pred             eeeeeeccCCccccccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceEEEe---ccCCccEEEEEEcCCCCEEEE
Q psy16881        102 TRVGVYGQDSETVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTCIKTL---ESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       102 ~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~sg~~dg~I~iwd~~~~~~~~~~---~~~~~~V~~~~~s~~~~~l~s  177 (222)
                                  +.+|...|.+++|+| +++++++++.||.|++||+++++.+..+   .+|...|.+++|+|++++|++
T Consensus       111 ------------~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  178 (366)
T 3k26_A          111 ------------YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMS  178 (366)
T ss_dssp             ------------EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEE
T ss_pred             ------------ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEE
Confidence                        124788999999999 8899999999999999999999888887   789999999999999999999


Q ss_pred             eeCCCeEEEEeCC-------------------------------------------------CCeEEEeeCCCcEEEEeC
Q psy16881        178 GSNDKTVTIWDML-------------------------------------------------ATLLASGSNDKTVTIWDM  208 (222)
Q Consensus       178 ~s~D~~i~lwd~~-------------------------------------------------~~~l~s~~~d~~i~iwd~  208 (222)
                      ++.|+.|++||+.                                                 ..++++++.|+.|++||+
T Consensus       179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~  258 (366)
T 3k26_A          179 CGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKP  258 (366)
T ss_dssp             EETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEE
T ss_pred             ecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeC
Confidence            9999999999985                                                 457999999999999998


Q ss_pred             CC
Q psy16881        209 RG  210 (222)
Q Consensus       209 ~~  210 (222)
                      +.
T Consensus       259 ~~  260 (366)
T 3k26_A          259 GK  260 (366)
T ss_dssp             SS
T ss_pred             CC
Confidence            74

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.9e-22  Score=168.98  Aligned_cols=178  Identities=20%  Similarity=0.338  Sum_probs=126.2

Q ss_pred             eeccceEEEEEcC-CCCeEEEecCCCeEEEEeCCC---Cc---eEEeeccCCCcceeeccceecCccCCcccceeeeeee
Q psy16881         25 HIGSNMRCVRFSP-DTRLLATGGDDETVTVWRSDD---LS---LIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK   97 (222)
Q Consensus        25 ~~~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (222)
                      +|.+.|.+++|+| ++++|++|+.||+|++||+.+   ..   .....   .|. ..+..   +.+.+.....+.+....
T Consensus        61 ~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~---~h~-~~v~~---~~~~~~~~~l~s~s~dg  133 (437)
T 3gre_A           61 NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY---DCS-STVTQ---ITMIPNFDAFAVSSKDG  133 (437)
T ss_dssp             TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE---ECS-SCEEE---EEECTTSSEEEEEETTS
T ss_pred             CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec---cCC-CCEEE---EEEeCCCCEEEEEeCCC
Confidence            4578999999999 999999999999999999865   22   11111   111 11111   11222222222333333


Q ss_pred             eeEeeeeee--eccCCc----------cccc--cCCCEEEEE--EcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc--C
Q psy16881         98 QIIPTRVGV--YGQDSE----------TVGR--HTSAVTSVR--FNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES--H  159 (222)
Q Consensus        98 ~~~~~~~~~--~~~~~~----------~~~~--h~~~i~~l~--~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~--~  159 (222)
                      .+..|+...  .+....          .+..  +...+.++.  ++++++++++|+.|+.|++||+++++++..+.+  |
T Consensus       134 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h  213 (437)
T 3gre_A          134 QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPR  213 (437)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGG
T ss_pred             EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCC
Confidence            444454321  110000          1111  456677776  557889999999999999999999999998887  7


Q ss_pred             CccEEEEEEcCCCCEEEEeeCCCeEEEEeCC----------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        160 TRYVTCCTFSCDDSLLASGSNDKTVTIWDML----------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       160 ~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~----------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      ...|.+++|+|++++|++++.|+.|++||+.                            ..++++++.|+.|++||++
T Consensus       214 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~  291 (437)
T 3gre_A          214 HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV  291 (437)
T ss_dssp             GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred             CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence            8899999999999999999999999999974                            1279999999999999997

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.90  E-value=7.7e-22  Score=159.24  Aligned_cols=146  Identities=25%  Similarity=0.491  Sum_probs=121.8

Q ss_pred             EEeeeeeeccceEEEEEcCC-CCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPD-TRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK   97 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spd-g~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (222)
                      +|++|   .+.|++|+|+|+ +++|+|||.||+|++||+.+.......                                
T Consensus        33 tL~GH---~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------------------------   77 (340)
T 4aow_A           33 TLKGH---NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------------------------   77 (340)
T ss_dssp             EECCC---SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------------------------
T ss_pred             EECCc---cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------------------------
Confidence            34455   889999999998 689999999999999998643211000                                


Q ss_pred             eeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881         98 QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s  177 (222)
                                  ....+.+|...|.+++|+|+++++++++.|+.|++|+............+...+....+++++++|++
T Consensus        78 ------------~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  145 (340)
T 4aow_A           78 ------------PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS  145 (340)
T ss_dssp             ------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred             ------------eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCcccee
Confidence                        00123468999999999999999999999999999999988888888888888999999999999999


Q ss_pred             eeCCCeEEEEeCC--------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        178 GSNDKTVTIWDML--------------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       178 ~s~D~~i~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      ++.|+.+++||+.                          ..++++++.|+.|++||++..
T Consensus       146 ~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~  205 (340)
T 4aow_A          146 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC  205 (340)
T ss_dssp             EETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT
T ss_pred             ecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC
Confidence            9999999999973                          246889999999999999843

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.89  E-value=2.1e-21  Score=163.81  Aligned_cols=178  Identities=22%  Similarity=0.363  Sum_probs=130.2

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.|.+++|+|++ +|++|+.||+|++||+.++.....+.  ++... +......+. ......+.......+..|+..
T Consensus       161 h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~--~h~~~-v~~l~~~~~-~~~~~l~s~s~d~~i~vwd~~  235 (464)
T 3v7d_B          161 HDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFE--GHNST-VRCLDIVEY-KNIKYIVTGSRDNTLHVWKLP  235 (464)
T ss_dssp             CSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEEC--CCSSC-EEEEEEEES-SSCEEEEEEETTSCEEEEECC
T ss_pred             CCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEEC--CCCCc-cEEEEEecC-CCCCEEEEEcCCCcEEEeeCC
Confidence            47889999999988 89999999999999999887776653  22211 111110000 011111222222233333321


Q ss_pred             eecc----------------------CCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccE
Q psy16881        106 VYGQ----------------------DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV  163 (222)
Q Consensus       106 ~~~~----------------------~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V  163 (222)
                      ....                      ....+.+|...|.++  +++++++++|+.||.|++||+++++++..+.+|...|
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v  313 (464)
T 3v7d_B          236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI  313 (464)
T ss_dssp             CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCE
Confidence            1100                      012345688888877  4668999999999999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEeeCCCeEEEEeCC---------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        164 TCCTFSCDDSLLASGSNDKTVTIWDML---------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       164 ~~~~~s~~~~~l~s~s~D~~i~lwd~~---------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      .+++|+|++++|++++.|+.|++||+.                     ..++++++.|+.|++||++.
T Consensus       314 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~  381 (464)
T 3v7d_B          314 YSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND  381 (464)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence            999999999999999999999999984                     35799999999999999984

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.89  E-value=1.1e-21  Score=164.36  Aligned_cols=178  Identities=17%  Similarity=0.274  Sum_probs=126.4

Q ss_pred             cceEEEEEcCCC--CeEEEecCCCeEEEEeCCCCceEEeec--------------------------------------c
Q psy16881         28 SNMRCVRFSPDT--RLLATGGDDETVTVWRSDDLSLIMETN--------------------------------------D   67 (222)
Q Consensus        28 ~~v~~l~~spdg--~~l~tgs~Dg~i~iwd~~~~~~~~~~~--------------------------------------~   67 (222)
                      +.|.+++|+|++  .+|++++.||+|++|++.+........                                      .
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            779999999998  789999999999999987644321100                                      0


Q ss_pred             CCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccC-------CccccccCCCEEEEEEcCCC-CEEEEEeCC
Q psy16881         68 RGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQD-------SETVGRHTSAVTSVRFNHKS-SLLVSGSVD  139 (222)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~i~~l~~~~~~-~~l~sg~~d  139 (222)
                      .+|.. .+..   +.+.+.....+.+ ....+..|+.......       ...+.+|...|.+++|+|++ +++++|+.|
T Consensus       174 ~~h~~-~v~~---~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d  248 (447)
T 3dw8_B          174 NAHTY-HINS---ISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK  248 (447)
T ss_dssp             SCCSS-CCCE---EEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT
T ss_pred             cCCCc-ceEE---EEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC
Confidence            01110 0110   1111222222222 3334555543211111       12356799999999999998 899999999


Q ss_pred             CcEEEEeCCCCce----EEEeccCCc------------cEEEEEEcCCCCEEEEeeCCCeEEEEeCCC------------
Q psy16881        140 KTVKLWDVPSLTC----IKTLESHTR------------YVTCCTFSCDDSLLASGSNDKTVTIWDMLA------------  191 (222)
Q Consensus       140 g~I~iwd~~~~~~----~~~~~~~~~------------~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~------------  191 (222)
                      |.|++||+++++.    +..+.+|..            .|.+++|+|++++|++++. +.|++||+..            
T Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~  327 (447)
T 3dw8_B          249 GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHE  327 (447)
T ss_dssp             SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCG
T ss_pred             CeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccc
Confidence            9999999998876    678888876            8999999999999999999 9999999841            


Q ss_pred             ---------------------------CeEEEeeCCCcEEEEeCCCC
Q psy16881        192 ---------------------------TLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       192 ---------------------------~~l~s~~~d~~i~iwd~~~~  211 (222)
                                                 .+|++++.|+.|++||+++.
T Consensus       328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred             cccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence                                       35899999999999999843

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.1e-22  Score=175.41  Aligned_cols=183  Identities=13%  Similarity=0.028  Sum_probs=129.6

Q ss_pred             eeeccceEEEEEcCC------CCeEEEecCCCeEEEEeCCCCceEE----ee-----ccCCCcceeeccceecCccCCcc
Q psy16881         24 VHIGSNMRCVRFSPD------TRLLATGGDDETVTVWRSDDLSLIM----ET-----NDRGHTQGRIEGWGRVPACPLCR   88 (222)
Q Consensus        24 ~~~~~~v~~l~~spd------g~~l~tgs~Dg~i~iwd~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~~~~~~~   88 (222)
                      .|+.+.|..++|+|+      +++||+++.||+|++|++.+.....    ..     ...++. ..+....   +... .
T Consensus       204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~-~~v~sv~---~s~~-~  278 (524)
T 2j04_B          204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD-SLITTFD---FLSP-T  278 (524)
T ss_dssp             EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT-TCEEEEE---ESSS-S
T ss_pred             EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC-CCEEEEE---ecCC-C
Confidence            345678999999997      5799999999999999997653210    00     001111 1111111   1111 1


Q ss_pred             cceeeeeeeeeEeeeeeeeccCCccccccCCCEEEE--EEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEeccCCc--cE
Q psy16881         89 TRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSV--RFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTLESHTR--YV  163 (222)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l--~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~--~V  163 (222)
                      ..+.+.....+..|+..........+.+|...|.++  .|++++ ++|+||+.|++|+|||+++++++..+.+|..  .|
T Consensus       279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v  358 (524)
T 2j04_B          279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNL  358 (524)
T ss_dssp             EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSC
T ss_pred             eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcc
Confidence            223333344566665432212223467899999999  567887 8999999999999999998877666666653  47


Q ss_pred             EEEEEcCCCCEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        164 TCCTFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       164 ~~~~~s~~~~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      .+++|+|+++.+++++.|++|++||++                       .++|++|+.|++|++||+.+.
T Consensus       359 ~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          359 VPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             CCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred             cceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence            899999999999999999999999974                       356899999999999998754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2e-22  Score=167.15  Aligned_cols=161  Identities=17%  Similarity=0.268  Sum_probs=119.6

Q ss_pred             eccceEEEEEcCC-CCeEEEecCCCeEEEEeCCCCceEEeeccCCCc---ceeeccceecCccCCcccceeee-eee---
Q psy16881         26 IGSNMRCVRFSPD-TRLLATGGDDETVTVWRSDDLSLIMETNDRGHT---QGRIEGWGRVPACPLCRTRVFST-FVK---   97 (222)
Q Consensus        26 ~~~~v~~l~~spd-g~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~---   97 (222)
                      |...|.+++|+|+ +++|++++.||+|++||+.+.+...........   ...+..   +.+.+.....+... ...   
T Consensus       164 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~~l~~~~~d~~~~  240 (416)
T 2pm9_A          164 SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV---VEWHPKNSTRVATATGSDNDP  240 (416)
T ss_dssp             SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEE---EEECSSCTTEEEEEECCSSSC
T ss_pred             CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEE---EEECCCCCCEEEEEECCCCCc
Confidence            4678999999999 789999999999999999988776665322100   111111   11222221122222 222   


Q ss_pred             eeEeeeeeeeccCCcccc-ccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCC-CE
Q psy16881         98 QIIPTRVGVYGQDSETVG-RHTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD-SL  174 (222)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~-~h~~~i~~l~~~~-~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~-~~  174 (222)
                      .+..++..........+. +|...|.+++|+| +++++++++.||.|++||+++++++..+.+|...|.+++|+|++ .+
T Consensus       241 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  320 (416)
T 2pm9_A          241 SILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDL  320 (416)
T ss_dssp             CCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTE
T ss_pred             eEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCE
Confidence            344444322222334555 7999999999999 88999999999999999999999999999999999999999999 89


Q ss_pred             EEEeeCCCeEEEEeC
Q psy16881        175 LASGSNDKTVTIWDM  189 (222)
Q Consensus       175 l~s~s~D~~i~lwd~  189 (222)
                      |++++.|+.|++||+
T Consensus       321 l~s~~~d~~i~iw~~  335 (416)
T 2pm9_A          321 FACASFDNKIEVQTL  335 (416)
T ss_dssp             EEECCSSSEEEEEES
T ss_pred             EEEEecCCcEEEEEc
Confidence            999999999999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.89  E-value=3.2e-21  Score=156.80  Aligned_cols=139  Identities=22%  Similarity=0.389  Sum_probs=121.5

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ   98 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (222)
                      ++.+|   .+.|.+++|+|++++|++|+.||.|++||+.++.....                                  
T Consensus        27 ~l~~h---~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~----------------------------------   69 (369)
T 3zwl_B           27 KLTGH---ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT----------------------------------   69 (369)
T ss_dssp             EEECC---SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE----------------------------------
T ss_pred             EEEEe---eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh----------------------------------
Confidence            34455   88899999999999999999999999999875443321                                  


Q ss_pred             eEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEe
Q psy16881         99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG  178 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~  178 (222)
                                     +.+|...|.+++|+|++++|++++.||.|++||+++++++..+. +...|.+++|+|++++|+++
T Consensus        70 ---------------~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~  133 (369)
T 3zwl_B           70 ---------------LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAI  133 (369)
T ss_dssp             ---------------ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEE
T ss_pred             ---------------hhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEe
Confidence                           13478899999999999999999999999999999999888887 78889999999999999999


Q ss_pred             eCC-----CeEEEEeCC------------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        179 SND-----KTVTIWDML------------------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       179 s~D-----~~i~lwd~~------------------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +.+     +.|++||+.                                    ..++++++.|+.|++||++.
T Consensus       134 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  206 (369)
T 3zwl_B          134 LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN  206 (369)
T ss_dssp             ECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred             cCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence            999     999999973                                    23799999999999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.89  E-value=1.7e-21  Score=162.00  Aligned_cols=180  Identities=16%  Similarity=0.203  Sum_probs=126.7

Q ss_pred             eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      .|.+.|.+++|+|++++|++|+.||+|++||+.++.....+.  +|... +..   +.+.+.....+.......+..|+.
T Consensus       137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~h~~~-v~~---~~~~~~~~~l~s~~~d~~v~iwd~  210 (420)
T 3vl1_A          137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI--GHRAT-VTD---IAIIDRGRNVLSASLDGTIRLWEC  210 (420)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE--CCSSC-EEE---EEEETTTTEEEEEETTSCEEEEET
T ss_pred             cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc--CCCCc-EEE---EEEcCCCCEEEEEcCCCcEEEeEC
Confidence            347889999999999999999999999999999877665542  22211 111   111222222222222233444432


Q ss_pred             ee--eccCCc---------------------cccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec-cCC
Q psy16881        105 GV--YGQDSE---------------------TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE-SHT  160 (222)
Q Consensus       105 ~~--~~~~~~---------------------~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~~  160 (222)
                      ..  ......                     ....+...+.+++|+|+++++++|+.||.|++||+++++.+..+. .|.
T Consensus       211 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  290 (420)
T 3vl1_A          211 GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFT  290 (420)
T ss_dssp             TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTS
T ss_pred             CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccC
Confidence            10  000000                     011133455556668899999999999999999999888776664 578


Q ss_pred             ccEEEEEEcCCCC-EEEEeeCCCeEEEEeCC------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        161 RYVTCCTFSCDDS-LLASGSNDKTVTIWDML------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       161 ~~V~~~~~s~~~~-~l~s~s~D~~i~lwd~~------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      ..|.+++|+|+++ +|++++.|+.|++||+.                        ..++++++.|+.|++||+..
T Consensus       291 ~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          291 CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred             CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence            8999999999998 99999999999999984                        24799999999999999874

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.89  E-value=6.6e-22  Score=164.35  Aligned_cols=143  Identities=24%  Similarity=0.476  Sum_probs=120.5

Q ss_pred             eccceEEEEEcC-CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         26 IGSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        26 ~~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      |.+.|.+++|+| ++++|++|+.||+|++|++.+.......                                       
T Consensus        80 h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~---------------------------------------  120 (402)
T 2aq5_A           80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL---------------------------------------  120 (402)
T ss_dssp             CSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB---------------------------------------
T ss_pred             CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc---------------------------------------
Confidence            478899999999 9999999999999999998754221100                                       


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEe--ccCCccEEEEEEcCCCCEEEEeeCC
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTL--ESHTRYVTCCTFSCDDSLLASGSND  181 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~--~~~~~~V~~~~~s~~~~~l~s~s~D  181 (222)
                         ......+.+|...|.+++|+|++ +++++++.||.|++||+++++.+..+  .+|...|.+++|+|++++|++++.|
T Consensus       121 ---~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  197 (402)
T 2aq5_A          121 ---REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD  197 (402)
T ss_dssp             ---CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT
T ss_pred             ---CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC
Confidence               00011234689999999999998 69999999999999999999999888  8899999999999999999999999


Q ss_pred             CeEEEEeCC-------------------------CCeEEEe---eCCCcEEEEeCCC
Q psy16881        182 KTVTIWDML-------------------------ATLLASG---SNDKTVTIWDMRG  210 (222)
Q Consensus       182 ~~i~lwd~~-------------------------~~~l~s~---~~d~~i~iwd~~~  210 (222)
                      +.|++||+.                         ..+++++   +.|+.|++||++.
T Consensus       198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~  254 (402)
T 2aq5_A          198 KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKH  254 (402)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTB
T ss_pred             CcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcc
Confidence            999999974                         2357777   6899999999984

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.89  E-value=1.6e-21  Score=156.02  Aligned_cols=168  Identities=19%  Similarity=0.285  Sum_probs=99.6

Q ss_pred             ccceEEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceee
Q psy16881         14 NGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFS   93 (222)
Q Consensus        14 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (222)
                      +|+.........|...|.+++|+|++++|++|+.||+|++|++.+++.+....  +|.... ..+..     ........
T Consensus        54 tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~--~h~~~~-~~~~~-----~~~~l~s~  125 (318)
T 4ggc_A           54 SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT--SHSARV-GSLSW-----NSYILSSG  125 (318)
T ss_dssp             TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCE-EEEEE-----ETTEEEEE
T ss_pred             CCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec--CccceE-EEeec-----CCCEEEEE
Confidence            45555433223346789999999999999999999999999999988776653  222111 11100     00111111


Q ss_pred             eeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce----EEEeccCCccEEEEEEc
Q psy16881         94 TFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC----IKTLESHTRYVTCCTFS  169 (222)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~----~~~~~~~~~~V~~~~~s  169 (222)
                      ........+...........+.+|...+..+.++++++++++++.|+.|++||+++++.    ......+...|.++.++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~  205 (318)
T 4ggc_A          126 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC  205 (318)
T ss_dssp             ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEEC
T ss_pred             ecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEec
Confidence            11111211111111111234567899999999999999999999999999999976542    23334445555555555


Q ss_pred             CCCCE---EEEeeCCCeEEEEeC
Q psy16881        170 CDDSL---LASGSNDKTVTIWDM  189 (222)
Q Consensus       170 ~~~~~---l~s~s~D~~i~lwd~  189 (222)
                      +.+..   +++++.+++|++||.
T Consensus       206 ~~~~~~~~~~~~~~~~~i~lwd~  228 (318)
T 4ggc_A          206 PWQSNVLATGGGTSDRHIRIWNV  228 (318)
T ss_dssp             TTSTTEEEEEECTTTCEEEEEET
T ss_pred             CCCCcEEEEEecCCCCEEEEEec
Confidence            54331   123444555555554

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.89  E-value=3.1e-21  Score=155.17  Aligned_cols=179  Identities=15%  Similarity=0.239  Sum_probs=129.8

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      +...|.+++|+|++++|++++.||+|++|++.+...........+... +..   +.+.+.............+..++..
T Consensus        96 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-i~~---~~~~~~~~~l~~~~~dg~v~~~d~~  171 (337)
T 1gxr_A           96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA-CYA---LAISPDSKVCFSCCSDGNIAVWDLH  171 (337)
T ss_dssp             TTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSC-EEE---EEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCc-eEE---EEECCCCCEEEEEeCCCcEEEEeCC
Confidence            468899999999999999999999999999987663221111111111 111   1111222222222222334444321


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                      . ......+..|...|.+++|+|+++++++++.||.|++||+++++.+..+. +...+.+++|+|++++|++++.|+.|+
T Consensus       172 ~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~  249 (337)
T 1gxr_A          172 N-QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVE  249 (337)
T ss_dssp             T-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             C-CceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEE
Confidence            1 11123455688999999999999999999999999999999988877764 677899999999999999999999999


Q ss_pred             EEeCC----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        186 IWDML----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       186 lwd~~----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +||+.                      ..++++++.|+.|++||+..
T Consensus       250 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~  296 (337)
T 1gxr_A          250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             EEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence            99984                      35799999999999999974

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.89  E-value=4.3e-22  Score=166.84  Aligned_cols=179  Identities=15%  Similarity=0.244  Sum_probs=126.7

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCC---CCceEEeeccCCCcceeeccceecC-------------ccCCccc
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSD---DLSLIMETNDRGHTQGRIEGWGRVP-------------ACPLCRT   89 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~   89 (222)
                      |.+.|.+++|+|++++|++|+.||+|++||++   ++........  +   .+......+             .......
T Consensus       110 h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (437)
T 3gre_A          110 CSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC--E---CIRKINLKNFGKNEYAVRMRAFVNEEKSL  184 (437)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE--E---EEEEEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccc--c---eeEEEEccCcccccCceEEEEEEcCCCCE
Confidence            57889999999999999999999999999984   3333322110  0   000000000             0011111


Q ss_pred             ceeeeeeeeeEeeeeeeeccCCccccc--cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec-cCCccEEEE
Q psy16881         90 RVFSTFVKQIIPTRVGVYGQDSETVGR--HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE-SHTRYVTCC  166 (222)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~~~~V~~~  166 (222)
                      .+.......+..|+... ......+..  |...|++++|+|+++++++|+.||.|++||+++++++..+. .|...|.++
T Consensus       185 l~~~~~d~~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~  263 (437)
T 3gre_A          185 LVALTNLSRVIIFDIRT-LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHV  263 (437)
T ss_dssp             EEEEETTSEEEEEETTT-CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEE
T ss_pred             EEEEeCCCeEEEEeCCC-CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEE
Confidence            22222223444444211 111223344  78999999999999999999999999999999999988876 788899999


Q ss_pred             EEc----CCCCEEEEeeCCCeEEEEeCCC------------------------------------------------CeE
Q psy16881        167 TFS----CDDSLLASGSNDKTVTIWDMLA------------------------------------------------TLL  194 (222)
Q Consensus       167 ~~s----~~~~~l~s~s~D~~i~lwd~~~------------------------------------------------~~l  194 (222)
                      +|+    +++.+|++++.|+.|++||+..                                                .++
T Consensus       264 ~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l  343 (437)
T 3gre_A          264 EVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKIL  343 (437)
T ss_dssp             EECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEE
T ss_pred             EeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEE
Confidence            665    5678999999999999999841                                                369


Q ss_pred             EEeeCCCcEEEEeCCC
Q psy16881        195 ASGSNDKTVTIWDMRG  210 (222)
Q Consensus       195 ~s~~~d~~i~iwd~~~  210 (222)
                      ++++.|+.|++||++.
T Consensus       344 ~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          344 LTDEATSSIVMFSLNE  359 (437)
T ss_dssp             EEEGGGTEEEEEETTC
T ss_pred             EecCCCCeEEEEECCC
Confidence            9999999999999973

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.89  E-value=1.4e-21  Score=161.02  Aligned_cols=158  Identities=18%  Similarity=0.224  Sum_probs=113.7

Q ss_pred             eccceEEEEEcC-CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         26 IGSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        26 ~~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      |.+.|.+++|+| ++++|++++.|++|++||+.+... ............+..   +.+.+.....+.......+..++.
T Consensus       117 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~d~~i~i~d~  192 (383)
T 3ei3_B          117 PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI-QVFAKTDSWDYWYCC---VDVSVSRQMLATGDSTGRLLLLGL  192 (383)
T ss_dssp             TTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE-EEEECCCCSSCCEEE---EEEETTTTEEEEEETTSEEEEEET
T ss_pred             cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce-EEEeccCCCCCCeEE---EEECCCCCEEEEECCCCCEEEEEC
Confidence            478899999999 789999999999999999986332 222111111111111   112222222233333334545543


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCC----CceEEEeccCCccEEEEEEcC-CCCEEEEe
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPS----LTCIKTLESHTRYVTCCTFSC-DDSLLASG  178 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~----~~~~~~~~~~~~~V~~~~~s~-~~~~l~s~  178 (222)
                        .......+..|...|.+++|+|+++ ++++++.|+.|++||+++    +.++..+ +|...|.+++|+| ++.+|+++
T Consensus       193 --~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~  269 (383)
T 3ei3_B          193 --DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTT  269 (383)
T ss_dssp             --TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEE
T ss_pred             --CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEE
Confidence              1223345567999999999999998 999999999999999987    5566666 6899999999999 99999999


Q ss_pred             eCCCeEEEEeCC
Q psy16881        179 SNDKTVTIWDML  190 (222)
Q Consensus       179 s~D~~i~lwd~~  190 (222)
                      +.|+.|++||+.
T Consensus       270 ~~d~~i~iwd~~  281 (383)
T 3ei3_B          270 DQRNEIRVYSSY  281 (383)
T ss_dssp             ESSSEEEEEETT
T ss_pred             cCCCcEEEEECC
Confidence            999999999984

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.89  E-value=2.2e-21  Score=161.34  Aligned_cols=177  Identities=21%  Similarity=0.310  Sum_probs=132.2

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      +.+.|.+++|+|++++|++|+.||.|++||+.++.......  ++... +....   .  .............+..++..
T Consensus       133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~-v~~~~---~--~~~~l~~~~~dg~i~i~d~~  204 (401)
T 4aez_A          133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA--GHQAR-VGCLS---W--NRHVLSSGSRSGAIHHHDVR  204 (401)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSC-EEEEE---E--ETTEEEEEETTSEEEEEETT
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec--CCCCc-eEEEE---E--CCCEEEEEcCCCCEEEEecc
Confidence            47889999999999999999999999999999887776653  22211 11111   1  11112222233344444432


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCC-CEEEEee--CCC
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD-SLLASGS--NDK  182 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~-~~l~s~s--~D~  182 (222)
                      ........+.+|...|.+++|+|+++++++|+.||.|++||+++++.+..+..|...|.+++|+|++ .++++++  .|+
T Consensus       205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~  284 (401)
T 4aez_A          205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK  284 (401)
T ss_dssp             SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred             cCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCC
Confidence            2222234456799999999999999999999999999999999999999999999999999999976 5666655  799


Q ss_pred             eEEEEeCC----------------------CCeEEE--eeCCCcEEEEeCCC
Q psy16881        183 TVTIWDML----------------------ATLLAS--GSNDKTVTIWDMRG  210 (222)
Q Consensus       183 ~i~lwd~~----------------------~~~l~s--~~~d~~i~iwd~~~  210 (222)
                      .|++||+.                      ..++++  |+.|+.|++||+..
T Consensus       285 ~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          285 QIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             EEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence            99999984                      345777  44899999999874

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.2e-21  Score=165.25  Aligned_cols=160  Identities=19%  Similarity=0.289  Sum_probs=114.7

Q ss_pred             eccceEEEEEcCCCCeE-EEecCCCeEEEEeCC--CCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee
Q psy16881         26 IGSNMRCVRFSPDTRLL-ATGGDDETVTVWRSD--DLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT  102 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l-~tgs~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (222)
                      +.+.|.+++|+|++++| ++|+.||+|++|++.  ++.....+....+. ..+..   +.+.+.....+.+.....+..+
T Consensus       101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~v~~---~~~sp~~~~l~~~~~~g~v~~~  176 (450)
T 2vdu_B          101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFS-KRPNA---ISIAEDDTTVIIADKFGDVYSI  176 (450)
T ss_dssp             CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECS-SCEEE---EEECTTSSEEEEEETTSEEEEE
T ss_pred             cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCC-CCceE---EEEcCCCCEEEEEeCCCcEEEE
Confidence            45679999999999996 899999999999998  66655443211111 11111   1222222222233222233333


Q ss_pred             eeeeec--c-CCccccccCCCEEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCceEEE-eccCCccEEEEEEcCCCCEE
Q psy16881        103 RVGVYG--Q-DSETVGRHTSAVTSVRFNHK---SSLLVSGSVDKTVKLWDVPSLTCIKT-LESHTRYVTCCTFSCDDSLL  175 (222)
Q Consensus       103 ~~~~~~--~-~~~~~~~h~~~i~~l~~~~~---~~~l~sg~~dg~I~iwd~~~~~~~~~-~~~~~~~V~~~~~s~~~~~l  175 (222)
                      +.....  . ....+.+|...|.+++|+|+   +++|++|+.|+.|++||+++++++.. +.+|...|.+++|+ ++++|
T Consensus       177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l  255 (450)
T 2vdu_B          177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLL  255 (450)
T ss_dssp             ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEE
T ss_pred             ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEE
Confidence            321111  1 12256679999999999999   88999999999999999999888877 56899999999999 99999


Q ss_pred             EEeeCCCeEEEEeCC
Q psy16881        176 ASGSNDKTVTIWDML  190 (222)
Q Consensus       176 ~s~s~D~~i~lwd~~  190 (222)
                      ++++.|++|++||+.
T Consensus       256 ~s~~~d~~v~vwd~~  270 (450)
T 2vdu_B          256 LSAGGDDKIFAWDWK  270 (450)
T ss_dssp             EEEESSSEEEEEETT
T ss_pred             EEEeCCCeEEEEECC
Confidence            999999999999973

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.89  E-value=1.4e-21  Score=159.57  Aligned_cols=182  Identities=17%  Similarity=0.164  Sum_probs=131.0

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc--eEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS--LIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      |.+.|.+++|+|++++|++|+.||+|++|++.+..  ....+.  ++... +..   +.+.+.....+.......+..|+
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~--~h~~~-v~~---~~~~~~~~~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK--EHNGQ-VTG---VDWAPDSNRIVTCGTDRNAYVWT   80 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE--CCSSC-EEE---EEEETTTTEEEEEETTSCEEEEE
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec--CCCCc-ccE---EEEeCCCCEEEEEcCCCeEEEEE
Confidence            36889999999999999999999999999998775  444432  22211 111   11222222222233333455554


Q ss_pred             eeeec-cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce---EE-EeccCCccEEEEEEcCCCCEEEEe
Q psy16881        104 VGVYG-QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC---IK-TLESHTRYVTCCTFSCDDSLLASG  178 (222)
Q Consensus       104 ~~~~~-~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~---~~-~~~~~~~~V~~~~~s~~~~~l~s~  178 (222)
                      ..... .....+..|...|.+++|+|+++++++++.|+.|++||++..+.   .. ...+|...|.+++|+|++++|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  160 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG  160 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEE
Confidence            32110 01112346889999999999999999999999999999987652   33 336788999999999999999999


Q ss_pred             eCCCeEEEEeCC-----------------------------------------CCeEEEeeCCCcEEEEeCC-CCcc
Q psy16881        179 SNDKTVTIWDML-----------------------------------------ATLLASGSNDKTVTIWDMR-GNLS  213 (222)
Q Consensus       179 s~D~~i~lwd~~-----------------------------------------~~~l~s~~~d~~i~iwd~~-~~~~  213 (222)
                      +.|+.|++||+.                                         ..++++++.|+.|++||++ ++..
T Consensus       161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  237 (372)
T 1k8k_C          161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV  237 (372)
T ss_dssp             ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred             cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence            999999999931                                         2479999999999999997 4443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.89  E-value=7.8e-22  Score=164.04  Aligned_cols=176  Identities=18%  Similarity=0.241  Sum_probs=128.5

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY  107 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (222)
                      ..+....|+|++++|++|+.||.|++||+.+.......  .+|... +..   +.+.+.....+.+.....+..|+.. .
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~h~~~-v~~---~~~~~~~~~l~s~s~d~~i~iwd~~-~  170 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID--QAHVSE-ITK---LKFFPSGEALISSSQDMQLKIWSVK-D  170 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET--TSSSSC-EEE---EEECTTSSEEEEEETTSEEEEEETT-T
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec--ccccCc-cEE---EEECCCCCEEEEEeCCCeEEEEeCC-C
Confidence            33455578999999999999999999999877665543  222221 211   1222222223333333455555532 1


Q ss_pred             ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc---CCccEEE-------------------
Q psy16881        108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES---HTRYVTC-------------------  165 (222)
Q Consensus       108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~---~~~~V~~-------------------  165 (222)
                      ......+.+|...|.+++|+|+++++++++.|+.|++||+++++.+..+..   +...|.+                   
T Consensus       171 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v  250 (420)
T 3vl1_A          171 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK  250 (420)
T ss_dssp             CCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred             CcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence            223345667999999999999999999999999999999999998888864   3334444                   


Q ss_pred             --EEEcCCCCEEEEeeCCCeEEEEeCC------------------------CC-eEEEeeCCCcEEEEeCCC
Q psy16881        166 --CTFSCDDSLLASGSNDKTVTIWDML------------------------AT-LLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       166 --~~~s~~~~~l~s~s~D~~i~lwd~~------------------------~~-~l~s~~~d~~i~iwd~~~  210 (222)
                        ++|+|++++|++++.|+.|++||+.                        .. ++++++.|+.|++||++.
T Consensus       251 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  322 (420)
T 3vl1_A          251 NNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS  322 (420)
T ss_dssp             CTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             cceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC
Confidence              4457899999999999999999984                        23 899999999999999984

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2e-20  Score=152.11  Aligned_cols=177  Identities=14%  Similarity=0.192  Sum_probs=131.2

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee-----eeeE
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV-----KQII  100 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  100 (222)
                      |.+.|.+++|+|++++|++++.||+|++||+.++..........    .+..   +.+.+.....+.....     ..+.
T Consensus        73 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~v~~---~~~~~~~~~l~~~~~~~~~~~g~i~  145 (369)
T 3zwl_B           73 HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPV----PVKR---VEFSPCGNYFLAILDNVMKNPGSIN  145 (369)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSS----CEEE---EEECTTSSEEEEEECCBTTBCCEEE
T ss_pred             cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC----CeEE---EEEccCCCEEEEecCCccCCCCEEE
Confidence            47889999999999999999999999999999887776653111    1111   1111222222222211     2333


Q ss_pred             eeeeeeec----------cCCccccccCC--CEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceEEEeccCCccEEEEE
Q psy16881        101 PTRVGVYG----------QDSETVGRHTS--AVTSVRFNHKSSLLVSGSVDKTVKLWDVPS-LTCIKTLESHTRYVTCCT  167 (222)
Q Consensus       101 ~~~~~~~~----------~~~~~~~~h~~--~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~V~~~~  167 (222)
                      .++.....          .....+..|..  .+.+++|+++++++++++.||.|++||+++ .+.+..+..|...|.+++
T Consensus       146 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~  225 (369)
T 3zwl_B          146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQ  225 (369)
T ss_dssp             EEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEE
T ss_pred             EEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEE
Confidence            33322111          11122334555  899999999999999999999999999998 678888999999999999


Q ss_pred             EcCCCCEEEEeeCCCeEEEEeCC----------------------CCeEEEeeCCC--------------cEEEEeCC
Q psy16881        168 FSCDDSLLASGSNDKTVTIWDML----------------------ATLLASGSNDK--------------TVTIWDMR  209 (222)
Q Consensus       168 ~s~~~~~l~s~s~D~~i~lwd~~----------------------~~~l~s~~~d~--------------~i~iwd~~  209 (222)
                      |+|++++|++++.|+.|++||+.                      ..++++++.++              .+++||+.
T Consensus       226 ~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  303 (369)
T 3zwl_B          226 FSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI  303 (369)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT
T ss_pred             ECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC
Confidence            99999999999999999999984                      35688888777              89999987

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.89  E-value=1.3e-20  Score=155.34  Aligned_cols=159  Identities=22%  Similarity=0.345  Sum_probs=113.7

Q ss_pred             eccceEEEEEcC-CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         26 IGSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        26 ~~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      |...|.+++|+| ++++|++++.||.|++||+.+............    +......+........+.......+..++.
T Consensus        98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  173 (408)
T 4a11_B           98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEET----VYSHHMSPVSTKHCLVAVGTRGPKVQLCDL  173 (408)
T ss_dssp             CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSC----EEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred             CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCc----eeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence            578899999999 778999999999999999998877665532111    111111111111112222222333444442


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCc-eEEEe---------------ccCCccEEEEE
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLT-CIKTL---------------ESHTRYVTCCT  167 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~-~~~~~---------------~~~~~~V~~~~  167 (222)
                      . .......+..|...|.+++|+|+++ ++++++.||.|++||+++.. ++..+               .+|...|.+++
T Consensus       174 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  252 (408)
T 4a11_B          174 K-SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC  252 (408)
T ss_dssp             S-SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred             C-CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence            1 1222345567899999999999998 69999999999999998764 34444               56888999999


Q ss_pred             EcCCCCEEEEeeCCCeEEEEeC
Q psy16881        168 FSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       168 ~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      |+|++++|++++.|+.|++||+
T Consensus       253 ~~~~~~~l~~~~~dg~i~vwd~  274 (408)
T 4a11_B          253 FTSDGLHLLTVGTDNRMRLWNS  274 (408)
T ss_dssp             ECTTSSEEEEEETTSCEEEEET
T ss_pred             EcCCCCEEEEecCCCeEEEEEC
Confidence            9999999999999999999996

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.89  E-value=5.2e-22  Score=163.01  Aligned_cols=159  Identities=17%  Similarity=0.147  Sum_probs=108.4

Q ss_pred             eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc---eEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEe
Q psy16881         25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS---LIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIP  101 (222)
Q Consensus        25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (222)
                      .|...|.+++|+|++++|++++.||+|++||+.+..   .....  ..+... +..   +.+.+.....+.......+..
T Consensus        53 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~--~~~~~~-v~~---~~~~~~~~~l~~~~~d~~i~i  126 (377)
T 3dwl_C           53 DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL--LRLNRA-ATF---VRWSPNEDKFAVGSGARVISV  126 (377)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC--CCCSSC-EEE---EECCTTSSCCEEEESSSCEEE
T ss_pred             cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe--cccCCc-eEE---EEECCCCCEEEEEecCCeEEE
Confidence            357889999999999999999999999999998765   22222  222211 111   222222233333333344555


Q ss_pred             eeeeeecc--CCccccc-cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC------------------CCceEEEeccCC
Q psy16881        102 TRVGVYGQ--DSETVGR-HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP------------------SLTCIKTLESHT  160 (222)
Q Consensus       102 ~~~~~~~~--~~~~~~~-h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~------------------~~~~~~~~~~~~  160 (222)
                      |+......  ....+.+ |...|.+++|+|+++++++++.|+.|++||++                  .++++..+ +|.
T Consensus       127 wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  205 (377)
T 3dwl_C          127 CYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG  205 (377)
T ss_dssp             CCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS
T ss_pred             EEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC
Confidence            54322111  1234455 89999999999999999999999999999985                  34566666 899


Q ss_pred             ccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        161 RYVTCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       161 ~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      ..|.+++|+|++++|++++.|+.|++||+.
T Consensus       206 ~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~  235 (377)
T 3dwl_C          206 GWVHAVGFSPSGNALAYAGHDSSVTIAYPS  235 (377)
T ss_dssp             SSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred             ceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            999999999999999999999999999963

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.89  E-value=7.2e-22  Score=160.63  Aligned_cols=178  Identities=20%  Similarity=0.327  Sum_probs=128.6

Q ss_pred             eccceEEEEEcC-CCCeEEEecCCCeEEEEeCCCCceEEeecc-CCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         26 IGSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETND-RGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        26 ~~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      |...|.+++|+| ++++|++|+.||+|++||+.++........ .++. ..+..   +.+.+.....+.......+..++
T Consensus       114 ~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~v~~---~~~~~~~~~l~~~~~dg~i~i~d  189 (366)
T 3k26_A          114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR-DEVLS---ADYDLLGEKIMSCGMDHSLKLWR  189 (366)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS-SCEEE---EEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc-CceeE---EEECCCCCEEEEecCCCCEEEEE
Confidence            378899999999 899999999999999999998877766521 1121 11111   11122222222222233344443


Q ss_pred             eeeecc---------------------------CCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce----
Q psy16881        104 VGVYGQ---------------------------DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC----  152 (222)
Q Consensus       104 ~~~~~~---------------------------~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~----  152 (222)
                      ......                           .......|...|.+++|+  ++++++++.|+.|++||+++.+.    
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~  267 (366)
T 3k26_A          190 INSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDK  267 (366)
T ss_dssp             SCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGG
T ss_pred             CCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccc
Confidence            211000                           001122388999999998  78999999999999999887643    


Q ss_pred             ----------EEEeccCCccEEEEEEcCC--CCEEEEeeCCCeEEEEeCC-----------------------------C
Q psy16881        153 ----------IKTLESHTRYVTCCTFSCD--DSLLASGSNDKTVTIWDML-----------------------------A  191 (222)
Q Consensus       153 ----------~~~~~~~~~~V~~~~~s~~--~~~l~s~s~D~~i~lwd~~-----------------------------~  191 (222)
                                +..+..|...|.+++|+|+  +++|++++.|+.|++||+.                             .
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  347 (366)
T 3k26_A          268 IKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS  347 (366)
T ss_dssp             CCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS
T ss_pred             cccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC
Confidence                      7778889999999999999  9999999999999999983                             3


Q ss_pred             CeEEEeeCCCcEEEEeCC
Q psy16881        192 TLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       192 ~~l~s~~~d~~i~iwd~~  209 (222)
                      .+|++++.|+.|++||+.
T Consensus       348 ~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          348 SILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SEEEEEETTSEEEEEEC-
T ss_pred             CeEEEEeCCCEEEEEEec
Confidence            579999999999999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.88  E-value=1.8e-21  Score=174.57  Aligned_cols=177  Identities=22%  Similarity=0.345  Sum_probs=135.9

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      .+.|.+++|+|+|++|++|+.||+|++||+.++.......  ++.. .+..   +.+.+.....+.......+..|+.. 
T Consensus        13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~--~~~~-~v~~---~~~s~~~~~l~~~~~dg~i~vw~~~-   85 (814)
T 3mkq_A           13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ--VTET-PVRA---GKFIARKNWIIVGSDDFRIRVFNYN-   85 (814)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSS-CEEE---EEEEGGGTEEEEEETTSEEEEEETT-
T ss_pred             CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe--cCCC-cEEE---EEEeCCCCEEEEEeCCCeEEEEECC-
Confidence            7889999999999999999999999999999887766553  2211 1111   1122222223333333344445421 


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceEEEeccCCccEEEEEEcC-CCCEEEEeeCCCeE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL-TCIKTLESHTRYVTCCTFSC-DDSLLASGSNDKTV  184 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~V~~~~~s~-~~~~l~s~s~D~~i  184 (222)
                      .+.....+.+|...|.+++|+|+++++++++.||.|++||+.++ .....+.+|...|.+++|+| ++..|++++.|+.|
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v  165 (814)
T 3mkq_A           86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV  165 (814)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred             CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence            11222345679999999999999999999999999999999876 66778889999999999999 88999999999999


Q ss_pred             EEEeCC--------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        185 TIWDML--------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       185 ~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      ++||+.                          ..++++++.|+.|++||++.
T Consensus       166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~  217 (814)
T 3mkq_A          166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT  217 (814)
T ss_dssp             EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred             EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            999973                          34799999999999999873

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=2.3e-21  Score=157.99  Aligned_cols=134  Identities=14%  Similarity=0.155  Sum_probs=113.3

Q ss_pred             ccceEEEEEcC--CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         27 GSNMRCVRFSP--DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        27 ~~~v~~l~~sp--dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      .+.|.+++|+|  ++++|++++.||+|++||+.++......                                       
T Consensus       125 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---------------------------------------  165 (343)
T 3lrv_A          125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH---------------------------------------  165 (343)
T ss_dssp             SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE---------------------------------------
T ss_pred             CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE---------------------------------------
Confidence            57799999999  9999999999999999998755432111                                       


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE-EEecc-CCccEEEEEEcCCCCEEEEeeCCC
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCI-KTLES-HTRYVTCCTFSCDDSLLASGSNDK  182 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~-~~~~~-~~~~V~~~~~s~~~~~l~s~s~D~  182 (222)
                               ...|...|.+++|+|+++++++|+.||.|++||+++++.+ ..+.. |...|.+++|+|++.+|++++.+ 
T Consensus       166 ---------~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-  235 (343)
T 3lrv_A          166 ---------SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-  235 (343)
T ss_dssp             ---------CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-
T ss_pred             ---------ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-
Confidence                     0124556889999999999999999999999999998877 78888 99999999999999999999955 


Q ss_pred             eEEEEeCC----------------------------CCeEEEeeC-CCcEEEEeCC
Q psy16881        183 TVTIWDML----------------------------ATLLASGSN-DKTVTIWDMR  209 (222)
Q Consensus       183 ~i~lwd~~----------------------------~~~l~s~~~-d~~i~iwd~~  209 (222)
                      .|++||++                            ..++++++. |+.|++|++.
T Consensus       236 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~  291 (343)
T 3lrv_A          236 TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD  291 (343)
T ss_dssp             BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence            99999974                            236888887 9999999985

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.88  E-value=3e-21  Score=161.61  Aligned_cols=178  Identities=19%  Similarity=0.285  Sum_probs=124.3

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc-----------eEEeeccCCCcc-----------eeeccceecCc
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS-----------LIMETNDRGHTQ-----------GRIEGWGRVPA   83 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~-----------~~~~~~~~~~~~-----------~~~~~~~~~~~   83 (222)
                      +.+.|.+++|+|+|++||+|+.||+|++|++.+..           ....+  .+|..           ..+..   +.+
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~~~~~~~~~V~~---l~~  101 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF--QSHEPEFDYLKSLEIEEKINK---IRW  101 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE--ECCCCEEEGGGTEEECCCCCE---EEE
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc--ccccccccccccccccCceEE---EEE
Confidence            36889999999999999999999999999988665           22222  22320           11111   111


Q ss_pred             cCCc--ccceeeeeeeeeEeeeeeeecc---------------------------------------CCccccccCCCEE
Q psy16881         84 CPLC--RTRVFSTFVKQIIPTRVGVYGQ---------------------------------------DSETVGRHTSAVT  122 (222)
Q Consensus        84 ~~~~--~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~h~~~i~  122 (222)
                      .+..  ...+.+.....+..|+......                                       ......+|...|.
T Consensus       102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  181 (447)
T 3dw8_B          102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN  181 (447)
T ss_dssp             CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred             cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence            2221  1122223333444444321100                                       0011356999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCC-CceEE-------EeccCCccEEEEEEcCCC-CEEEEeeCCCeEEEEeCC---
Q psy16881        123 SVRFNHKSSLLVSGSVDKTVKLWDVPS-LTCIK-------TLESHTRYVTCCTFSCDD-SLLASGSNDKTVTIWDML---  190 (222)
Q Consensus       123 ~l~~~~~~~~l~sg~~dg~I~iwd~~~-~~~~~-------~~~~~~~~V~~~~~s~~~-~~l~s~s~D~~i~lwd~~---  190 (222)
                      +++|+|+++++++| .|+.|++||+++ .+.+.       .+.+|...|.+++|+|++ ++|++++.|+.|++||+.   
T Consensus       182 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  260 (447)
T 3dw8_B          182 SISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA  260 (447)
T ss_dssp             EEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred             EEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence            99999999999999 799999999984 44444       256899999999999998 999999999999999963   


Q ss_pred             ------------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        191 ------------------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       191 ------------------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                                                          ..+|++++. +.|++||++.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM  315 (447)
T ss_dssp             SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred             cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence                                                236888888 9999999974

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.88  E-value=4.3e-21  Score=155.98  Aligned_cols=117  Identities=29%  Similarity=0.475  Sum_probs=100.3

Q ss_pred             eeccceEEEEEcCC---CCeEEEecCCCeEEEEeCCC-CceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeE
Q psy16881         25 HIGSNMRCVRFSPD---TRLLATGGDDETVTVWRSDD-LSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQII  100 (222)
Q Consensus        25 ~~~~~v~~l~~spd---g~~l~tgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (222)
                      .|.+.|.+++|+|+   |++|++|+.||.|++|++.+ .....                                     
T Consensus        37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~-------------------------------------   79 (368)
T 3mmy_A           37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP-------------------------------------   79 (368)
T ss_dssp             CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-------------------------------------
T ss_pred             CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-------------------------------------
Confidence            34788999999999   69999999999999999864 11110                                     


Q ss_pred             eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEE--cCCCCEEEEe
Q psy16881        101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTF--SCDDSLLASG  178 (222)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~--s~~~~~l~s~  178 (222)
                                 ..+.+|...|.+++|+|++++|++++.||.|++||+++++.+. +..|...|.+++|  ++++++|+++
T Consensus        80 -----------~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~  147 (368)
T 3mmy_A           80 -----------KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTG  147 (368)
T ss_dssp             -----------EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEE
T ss_pred             -----------EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEc
Confidence                       0123588999999999999999999999999999999887665 5578999999999  8999999999


Q ss_pred             eCCCeEEEEeCC
Q psy16881        179 SNDKTVTIWDML  190 (222)
Q Consensus       179 s~D~~i~lwd~~  190 (222)
                      +.|+.|++||+.
T Consensus       148 ~~dg~i~vwd~~  159 (368)
T 3mmy_A          148 SWDKTLKFWDTR  159 (368)
T ss_dssp             ETTSEEEEECSS
T ss_pred             cCCCcEEEEECC
Confidence            999999999974

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.88  E-value=7.1e-21  Score=154.40  Aligned_cols=180  Identities=14%  Similarity=0.186  Sum_probs=126.1

Q ss_pred             eccceEEEEEcCCCCe-EEEecC---CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCC---cccceeeeeeee
Q psy16881         26 IGSNMRCVRFSPDTRL-LATGGD---DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPL---CRTRVFSTFVKQ   98 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~-l~tgs~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~   98 (222)
                      |.+.|.+++|+|+++. +++|+.   ||+|++|++.++........ ++. ..+..   +.+.+.   ....+.......
T Consensus        17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-~~~-~~v~~---~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-EKA-KPIKC---GTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-EES-SCEEE---EECTTCCTTTCCEEEEETTSC
T ss_pred             CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-ccc-CcEEE---EEEcCCCCCCceEEEecCCCe
Confidence            4889999999999964 556766   99999999988765433211 111 11111   122222   122233333344


Q ss_pred             eEeeeeeeeccCCccccccCCCEEEEEE------cCCCCEEEEEeCCCcEEEEeCCCCc-eEEEeccCCc----cEEEEE
Q psy16881         99 IIPTRVGVYGQDSETVGRHTSAVTSVRF------NHKSSLLVSGSVDKTVKLWDVPSLT-CIKTLESHTR----YVTCCT  167 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~------~~~~~~l~sg~~dg~I~iwd~~~~~-~~~~~~~~~~----~V~~~~  167 (222)
                      +..|+..........+.+|...|.++.|      +++++++++++.||.|++||+++++ .+..+..|..    .|.++.
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  171 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA  171 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence            5555533222234456789999999954      6789999999999999999999876 6677765544    788888


Q ss_pred             ----EcCCCCEEEEeeCCCeEEEEeCC-------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        168 ----FSCDDSLLASGSNDKTVTIWDML-------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       168 ----~s~~~~~l~s~s~D~~i~lwd~~-------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                          |++++++|++++.|+.|++||+.                         ..++++++.|+.|++||++.
T Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  243 (357)
T 3i2n_A          172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT  243 (357)
T ss_dssp             EECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred             EEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence                78899999999999999999973                         25799999999999999873

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.88  E-value=4.9e-21  Score=160.86  Aligned_cols=181  Identities=25%  Similarity=0.385  Sum_probs=129.4

Q ss_pred             eeeccceEEEEEcCC-CCeEEEecCCCeEEEEeCCCC----------ceEEeeccCCCcceeeccceecCccCCcc-cce
Q psy16881         24 VHIGSNMRCVRFSPD-TRLLATGGDDETVTVWRSDDL----------SLIMETNDRGHTQGRIEGWGRVPACPLCR-TRV   91 (222)
Q Consensus        24 ~~~~~~v~~l~~spd-g~~l~tgs~Dg~i~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   91 (222)
                      ..|.+.|.+++|+|+ +++|++++.||.|++|++.+.          ......  .+|... +..   +.+.+... ..+
T Consensus       125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~-v~~---l~~~~~~~~~l~  198 (430)
T 2xyi_A          125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL--RGHQKE-GYG---LSWNPNLNGYLL  198 (430)
T ss_dssp             EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE--ECCSSC-CCC---EEECTTSTTEEE
T ss_pred             EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe--cCCCCC-eEE---EEeCCCCCCeEE
Confidence            344788999999997 679999999999999998752          222222  111111 111   11112222 122


Q ss_pred             eeeeeeeeEeeeeeeec------cCCccccccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC---ceEEEeccCCc
Q psy16881         92 FSTFVKQIIPTRVGVYG------QDSETVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSL---TCIKTLESHTR  161 (222)
Q Consensus        92 ~~~~~~~~~~~~~~~~~------~~~~~~~~h~~~i~~l~~~~-~~~~l~sg~~dg~I~iwd~~~~---~~~~~~~~~~~  161 (222)
                      .......+..|+.....      .....+.+|...|.+++|+| .+++|++++.||.|++||+++.   +.+..+..|..
T Consensus       199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  278 (430)
T 2xyi_A          199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA  278 (430)
T ss_dssp             EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred             EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence            22233345555432210      11234557899999999999 5679999999999999999876   56777889999


Q ss_pred             cEEEEEEcCCCC-EEEEeeCCCeEEEEeCC-------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        162 YVTCCTFSCDDS-LLASGSNDKTVTIWDML-------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       162 ~V~~~~~s~~~~-~l~s~s~D~~i~lwd~~-------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      .|++++|+|++. +|++|+.|+.|++||++                         ..++++++.|+.|++||++.
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            999999999987 78899999999999984                         13699999999999999975

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.88  E-value=6.2e-21  Score=158.47  Aligned_cols=137  Identities=18%  Similarity=0.405  Sum_probs=116.2

Q ss_pred             ccceEEEEEcCCC-CeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         27 GSNMRCVRFSPDT-RLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        27 ~~~v~~l~~spdg-~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      ...|.+++|+|++ ++|++++.||+|++||+.++.......                                       
T Consensus       131 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------------------------------------  171 (402)
T 2aq5_A          131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG---------------------------------------  171 (402)
T ss_dssp             SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC---------------------------------------
T ss_pred             CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe---------------------------------------
Confidence            7889999999998 699999999999999987654332210                                       


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe-ccCCcc-EEEEEEcCCCCEEEEe---eC
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL-ESHTRY-VTCCTFSCDDSLLASG---SN  180 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~-~~~~~~-V~~~~~s~~~~~l~s~---s~  180 (222)
                              ...|...|.+++|+|++++|++++.||.|++||+++++.+..+ .+|... +.++.|+|++.+|++|   +.
T Consensus       172 --------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~  243 (402)
T 2aq5_A          172 --------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMS  243 (402)
T ss_dssp             --------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTC
T ss_pred             --------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCC
Confidence                    0247889999999999999999999999999999999988888 678765 8899999999999999   79


Q ss_pred             CCeEEEEeCC-------------------------CCeEE-EeeCCCcEEEEeCCC
Q psy16881        181 DKTVTIWDML-------------------------ATLLA-SGSNDKTVTIWDMRG  210 (222)
Q Consensus       181 D~~i~lwd~~-------------------------~~~l~-s~~~d~~i~iwd~~~  210 (222)
                      |+.|++||+.                         ..+++ +++.|+.|++||++.
T Consensus       244 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~  299 (402)
T 2aq5_A          244 ERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS  299 (402)
T ss_dssp             CEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred             CceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence            9999999974                         23454 556799999999984

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.7e-20  Score=155.21  Aligned_cols=178  Identities=15%  Similarity=0.212  Sum_probs=132.3

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCccee------------eccceecCccCCcccceee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGR------------IEGWGRVPACPLCRTRVFS   93 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~   93 (222)
                      |...|.+++|+|++++|++++.||.|++|++.++...............            +...   .+... ...+..
T Consensus       148 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~  223 (425)
T 1r5m_A          148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDV---EWVDD-DKFVIP  223 (425)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCC---EEEET-TEEEEE
T ss_pred             CCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEE---EEcCC-CEEEEE
Confidence            4788999999999999999999999999999988776654322111000            0000   00000 111111


Q ss_pred             eeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCC
Q psy16881         94 TFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS  173 (222)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~  173 (222)
                      .....+..++.. .......+..|...|.+++|+|+++++++++.|+.|++||+++++.+..+.+|...|.+++|+|++ 
T Consensus       224 ~~~g~i~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-  301 (425)
T 1r5m_A          224 GPKGAIFVYQIT-EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-  301 (425)
T ss_dssp             CGGGCEEEEETT-CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-
T ss_pred             cCCCeEEEEEcC-CCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-
Confidence            222233333321 112223455789999999999999999999999999999999998888899999999999999999 


Q ss_pred             EEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        174 LLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       174 ~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      ++++++.|+.|++||+.                       ..++++++.|+.|++||++
T Consensus       302 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~  360 (425)
T 1r5m_A          302 KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK  360 (425)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred             EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence            99999999999999984                       3579999999999999997

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.87  E-value=8.1e-21  Score=173.19  Aligned_cols=146  Identities=16%  Similarity=0.184  Sum_probs=120.7

Q ss_pred             CCCcccceEEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCccc
Q psy16881         10 PSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT   89 (222)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (222)
                      .++|.=.+....+|   .+.|.+++|+|++++||+|+.||+|++|+.........                         
T Consensus         3 ~~~~~~~~~~~~gh---~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~-------------------------   54 (902)
T 2oaj_A            3 NKIFSLAETNKYGM---SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK-------------------------   54 (902)
T ss_dssp             CTTEEEEEEEEEEC---SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE-------------------------
T ss_pred             hheeeeccccccCC---CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE-------------------------
Confidence            34555445444555   78899999999999999999999999998754321110                         


Q ss_pred             ceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEc
Q psy16881         90 RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS  169 (222)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s  169 (222)
                                               ..|...|.+++|+| +++|++++.|++|++||+++++++..+. |...|++++|+
T Consensus        55 -------------------------~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~s  107 (902)
T 2oaj_A           55 -------------------------LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTD  107 (902)
T ss_dssp             -------------------------CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECC
T ss_pred             -------------------------cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEEC
Confidence                                     12567899999999 8899999999999999999999888876 66789999999


Q ss_pred             CCCCEEEEeeCCCeEEEEeCCC-----------------------------------CeEEEeeCCCcEEEEeCCCC
Q psy16881        170 CDDSLLASGSNDKTVTIWDMLA-----------------------------------TLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       170 ~~~~~l~s~s~D~~i~lwd~~~-----------------------------------~~l~s~~~d~~i~iwd~~~~  211 (222)
                      |++++|++|+.||+|++||+..                                   ..+++|+.|+.| +||++..
T Consensus       108 p~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~  183 (902)
T 2oaj_A          108 ASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVEN  183 (902)
T ss_dssp             TTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTT
T ss_pred             CCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCC
Confidence            9999999999999999999731                                   368889999999 9999843

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.87  E-value=8.5e-21  Score=162.72  Aligned_cols=135  Identities=13%  Similarity=0.194  Sum_probs=107.3

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      .+.|.+++|||+|++||+++.||+|++|+...  +.....   +.                                   
T Consensus        85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~---~~-----------------------------------  124 (588)
T 2j04_A           85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD---SK-----------------------------------  124 (588)
T ss_dssp             SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC---CS-----------------------------------
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc---CC-----------------------------------
Confidence            57899999999999999999999999998532  111100   00                                   


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-------eEEEe----ccCCccEEEEEEcCCCCEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT-------CIKTL----ESHTRYVTCCTFSCDDSLL  175 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~-------~~~~~----~~~~~~V~~~~~s~~~~~l  175 (222)
                           ..+  ....|.+++|+|+|+++++|+.||+|+|||+++++       .+.++    .+|...|.+++|+|+|  +
T Consensus       125 -----~~~--~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--L  195 (588)
T 2j04_A          125 -----GNL--SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--L  195 (588)
T ss_dssp             -----SCS--TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--E
T ss_pred             -----Ccc--ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--E
Confidence                 000  12358899999999999999999999999998875       35666    6788899999999999  8


Q ss_pred             EEeeCCCeEEEEeCC-------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        176 ASGSNDKTVTIWDML-------------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       176 ~s~s~D~~i~lwd~~-------------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      ++++.|+++++||+.                         ...+|+++ +++|++||+.+.
T Consensus       196 aass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~  255 (588)
T 2j04_A          196 VAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNY  255 (588)
T ss_dssp             EEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTT
T ss_pred             EEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCC
Confidence            888999999999972                         13577776 699999999844

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.87  E-value=7.5e-21  Score=159.75  Aligned_cols=183  Identities=26%  Similarity=0.414  Sum_probs=131.0

Q ss_pred             ccceEEEEEcCCCC-eEEEecCCCeEEEEeCCCCce----EEee-ccCCCcceeeccceecCccCCcccce-eeeeeeee
Q psy16881         27 GSNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSL----IMET-NDRGHTQGRIEGWGRVPACPLCRTRV-FSTFVKQI   99 (222)
Q Consensus        27 ~~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   99 (222)
                      .+.|.+++|+|+++ +|++|+.||+|++|++.+...    .... ...++.. .+..   +.+.+.....+ .......+
T Consensus       181 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~-~v~~---v~~~p~~~~~l~s~~~dg~i  256 (430)
T 2xyi_A          181 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA-VVED---VAWHLLHESLFGSVADDQKL  256 (430)
T ss_dssp             SSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSS-CEEE---EEECSSCTTEEEEEETTSEE
T ss_pred             CCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCC-CEee---eEEeCCCCCEEEEEeCCCeE
Confidence            78899999999998 999999999999999986321    1000 0011211 1111   11222112222 22233345


Q ss_pred             Eeeeeeeec--cCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCC-CceEEEeccCCccEEEEEEcCCCC-E
Q psy16881        100 IPTRVGVYG--QDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPS-LTCIKTLESHTRYVTCCTFSCDDS-L  174 (222)
Q Consensus       100 ~~~~~~~~~--~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~V~~~~~s~~~~-~  174 (222)
                      ..++.....  .....+..|...|++++|+|+++ ++++|+.||.|++||+++ .+.+..+..|...|.+++|+|+++ +
T Consensus       257 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~  336 (430)
T 2xyi_A          257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI  336 (430)
T ss_dssp             EEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTE
T ss_pred             EEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCE
Confidence            555543221  22334557899999999999987 799999999999999987 566788889999999999999985 7


Q ss_pred             EEEeeCCCeEEEEeCC-------------------------------------CC-eEEEeeCCCcEEEEeCCCCcc
Q psy16881        175 LASGSNDKTVTIWDML-------------------------------------AT-LLASGSNDKTVTIWDMRGNLS  213 (222)
Q Consensus       175 l~s~s~D~~i~lwd~~-------------------------------------~~-~l~s~~~d~~i~iwd~~~~~~  213 (222)
                      |++++.|+.|++||+.                                     .. ++++++.|+.|++|+++....
T Consensus       337 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~  413 (430)
T 2xyi_A          337 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY  413 (430)
T ss_dssp             EEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHH
T ss_pred             EEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccccc
Confidence            9999999999999973                                     13 799999999999999985543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.87  E-value=6.4e-22  Score=164.55  Aligned_cols=133  Identities=14%  Similarity=0.149  Sum_probs=108.4

Q ss_pred             EEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCCc
Q psy16881         33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSE  112 (222)
Q Consensus        33 l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (222)
                      ..+++++++|++|+.|++|+|||...+......                                            ...
T Consensus        95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~--------------------------------------------~~~  130 (393)
T 4gq1_A           95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQH--------------------------------------------VLG  130 (393)
T ss_dssp             --CCEEEEEEEEEETTSCEEEEEEETTEEEEEE--------------------------------------------EEC
T ss_pred             eecCCCCCEEEEEeCCCcEEEEECCCCccceee--------------------------------------------eec
Confidence            344556778999999999999997654322110                                            001


Q ss_pred             cccccCCCEEEEEEcC--------CCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCC-CEEEEeeCCCe
Q psy16881        113 TVGRHTSAVTSVRFNH--------KSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD-SLLASGSNDKT  183 (222)
Q Consensus       113 ~~~~h~~~i~~l~~~~--------~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~-~~l~s~s~D~~  183 (222)
                      .+.+|...|++++|+|        ++++|+||+.|++|+|||++++.++..+..|...|.+++|+|++ ++|++++.|++
T Consensus       131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~  210 (393)
T 4gq1_A          131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGN  210 (393)
T ss_dssp             TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred             ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCE
Confidence            3467999999999987        78899999999999999998888888888899999999999987 48999999999


Q ss_pred             EEEEeCC-------------------------------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        184 VTIWDML-------------------------------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       184 i~lwd~~-------------------------------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      |++||+.                                                 ...+++++.|+++++||++
T Consensus       211 v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~  285 (393)
T 4gq1_A          211 IRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF  285 (393)
T ss_dssp             EEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-
T ss_pred             EEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc
Confidence            9999973                                                 2468999999999999987

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.87  E-value=9.3e-21  Score=157.04  Aligned_cols=179  Identities=14%  Similarity=0.284  Sum_probs=130.9

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCC----CceEEeeccCCCcceeeccceecCccCC-cccceeeeeeeeeE
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDD----LSLIMETNDRGHTQGRIEGWGRVPACPL-CRTRVFSTFVKQII  100 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  100 (222)
                      +.+.|.+++|+|++++|++|+.||+|++|++.+    .......  .+|... +..   +.+.+. ....+.......+.
T Consensus        66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~--~~h~~~-v~~---~~~~~~~~~~l~s~~~dg~v~  139 (416)
T 2pm9_A           66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARF--SNHSSS-VKT---VKFNAKQDNVLASGGNNGEIF  139 (416)
T ss_dssp             CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEEC--CCSSSC-CCE---EEECSSSTTBEEEECSSSCEE
T ss_pred             cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhc--cCCccc-eEE---EEEcCCCCCEEEEEcCCCeEE
Confidence            467899999999999999999999999999986    2233333  222211 111   112222 12222223333455


Q ss_pred             eeeeeeec------c--CCccccccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceEEEeccC------CccEEE
Q psy16881        101 PTRVGVYG------Q--DSETVGRHTSAVTSVRFNHK-SSLLVSGSVDKTVKLWDVPSLTCIKTLESH------TRYVTC  165 (222)
Q Consensus       101 ~~~~~~~~------~--~~~~~~~h~~~i~~l~~~~~-~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~------~~~V~~  165 (222)
                      .|+.....      .  .......|...|.+++|+|+ ++++++++.||.|++||+++++.+..+..+      ...|.+
T Consensus       140 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  219 (416)
T 2pm9_A          140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV  219 (416)
T ss_dssp             BCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEE
T ss_pred             EEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEE
Confidence            55432111      0  11223568899999999999 689999999999999999999988888776      788999


Q ss_pred             EEEcCCC-CEEEEeeCCC---eEEEEeCC--------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        166 CTFSCDD-SLLASGSNDK---TVTIWDML--------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       166 ~~~s~~~-~~l~s~s~D~---~i~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      ++|+|++ .+|++++.|+   .|++||+.                          ..++++++.|+.|++||++.
T Consensus       220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~  294 (416)
T 2pm9_A          220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES  294 (416)
T ss_dssp             EEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS
T ss_pred             EEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC
Confidence            9999997 6899999998   99999973                          24699999999999999973

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.87  E-value=2.2e-20  Score=162.03  Aligned_cols=175  Identities=19%  Similarity=0.280  Sum_probs=130.4

Q ss_pred             ccc-eEEEEEcC--CCCeEEEecCCCeEEEEeCCCC--------ceEEeeccCCCcceeeccceecCccCCcccceeeee
Q psy16881         27 GSN-MRCVRFSP--DTRLLATGGDDETVTVWRSDDL--------SLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF   95 (222)
Q Consensus        27 ~~~-v~~l~~sp--dg~~l~tgs~Dg~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (222)
                      .+. |.+++|+|  ++++|++|+.||+|++|++.++        .......  .+.. .+..   +.+.+.....+....
T Consensus        63 ~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~--~~~~-~v~~---~~~s~~~~~l~~~~~  136 (615)
T 1pgu_A           63 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ--VLAG-PISD---ISWDFEGRRLCVVGE  136 (615)
T ss_dssp             TTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE--CCSS-CEEE---EEECTTSSEEEEEEC
T ss_pred             CCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhh--cccc-cEEE---EEEeCCCCEEEEecc
Confidence            778 99999999  9999999999999999999643        2332221  1111 1111   122222222222221


Q ss_pred             e----eeeEeeeeeeeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEeccCCc---cEEEEE
Q psy16881         96 V----KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTLESHTR---YVTCCT  167 (222)
Q Consensus        96 ~----~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~---~V~~~~  167 (222)
                      .    ..+..++.   ......+.+|...|.+++|+|+++ .+++++.|+.|++||+++++++..+.+|..   .|.+++
T Consensus       137 ~~~~~~~v~~~d~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~  213 (615)
T 1pgu_A          137 GRDNFGVFISWDS---GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE  213 (615)
T ss_dssp             CSSCSEEEEETTT---CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred             CCCCccEEEEEEC---CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEE
Confidence            1    12333321   112234567999999999999997 899999999999999999999999999999   999999


Q ss_pred             EcCC-CCEEEEeeCCCeEEEEeCC--------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        168 FSCD-DSLLASGSNDKTVTIWDML--------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       168 ~s~~-~~~l~s~s~D~~i~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      |+|+ +++|++++.|+.|++||+.                          ..++++++.|+.|++||++.
T Consensus       214 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~  283 (615)
T 1pgu_A          214 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT  283 (615)
T ss_dssp             ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT
T ss_pred             ECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCC
Confidence            9999 9999999999999999963                          23689999999999999983

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.87  E-value=2.4e-20  Score=174.45  Aligned_cols=162  Identities=28%  Similarity=0.412  Sum_probs=124.9

Q ss_pred             EEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee
Q psy16881         18 LILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK   97 (222)
Q Consensus        18 ~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (222)
                      ..+.+|   .+.|.+++|+|+|++|++|+.||+|++||+.++..+....  +|... +..   +.+++.....+......
T Consensus       609 ~~~~~h---~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~--~h~~~-v~~---~~~s~~~~~l~s~~~d~  679 (1249)
T 3sfz_A          609 LVVRPH---TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK--AHEDE-VLC---CAFSSDDSYIATCSADK  679 (1249)
T ss_dssp             EEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSC-EEE---EEECTTSSEEEEEETTS
T ss_pred             EEEecc---cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec--cCCCC-EEE---EEEecCCCEEEEEeCCC
Confidence            344555   7889999999999999999999999999999888776653  33222 111   22233333333333344


Q ss_pred             eeEeeeeeeeccCCccccccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEE
Q psy16881         98 QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHK--SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLL  175 (222)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~--~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l  175 (222)
                      .+..|+.. .+.....+.+|...|.+++|+++  +.++++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|
T Consensus       680 ~v~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l  758 (1249)
T 3sfz_A          680 KVKIWDSA-TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELL  758 (1249)
T ss_dssp             EEEEEETT-TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEE
T ss_pred             eEEEEECC-CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEE
Confidence            55555532 12222345679999999999984  4689999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCeEEEEeC
Q psy16881        176 ASGSNDKTVTIWDM  189 (222)
Q Consensus       176 ~s~s~D~~i~lwd~  189 (222)
                      ++++.|+.|++||+
T Consensus       759 ~s~s~dg~v~vwd~  772 (1249)
T 3sfz_A          759 ASCSADGTLRLWDV  772 (1249)
T ss_dssp             EEEESSSEEEEEEG
T ss_pred             EEEECCCeEEEEeC
Confidence            99999999999996

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.87  E-value=2.3e-20  Score=157.44  Aligned_cols=185  Identities=24%  Similarity=0.389  Sum_probs=127.3

Q ss_pred             eccceEEEEEc--CCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCccee-------------ecccee--cCccCCcc
Q psy16881         26 IGSNMRCVRFS--PDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGR-------------IEGWGR--VPACPLCR   88 (222)
Q Consensus        26 ~~~~v~~l~~s--pdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~~~~~   88 (222)
                      |.+.|.+++|+  +++++|++|+.||+|++||+.+................             ......  ........
T Consensus       202 h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  281 (464)
T 3v7d_B          202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN  281 (464)
T ss_dssp             CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETT
T ss_pred             CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCC
Confidence            47889999998  67899999999999999999876543221110000000             000000  00000011


Q ss_pred             cceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEE
Q psy16881         89 TRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTF  168 (222)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~  168 (222)
                      ..+.......+..++.. .......+.+|...|.+++|+++++++++|+.||.|++||+++++++..+.+|...|.++.|
T Consensus       282 ~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~  360 (464)
T 3v7d_B          282 IVVSGSYDNTLIVWDVA-QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL  360 (464)
T ss_dssp             EEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECC-CCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEE
Confidence            11111222233333321 11122345678999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEeeCCCeEEEEeCC----------------------CCeEEEeeCCCcEEEEeCC-CCccc
Q psy16881        169 SCDDSLLASGSNDKTVTIWDML----------------------ATLLASGSNDKTVTIWDMR-GNLSV  214 (222)
Q Consensus       169 s~~~~~l~s~s~D~~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~-~~~~~  214 (222)
                      +  +.+|++++.|+.|++||+.                      ..++++++ |+.|++||++ +++..
T Consensus       361 ~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~  426 (464)
T 3v7d_B          361 S--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH  426 (464)
T ss_dssp             C--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred             c--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence            7  6899999999999999984                      35678777 8999999998 55544

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.87  E-value=6.7e-21  Score=170.74  Aligned_cols=181  Identities=23%  Similarity=0.318  Sum_probs=132.9

Q ss_pred             eccceEEEEEcCC--CCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCC--cccceeeeeeeeeEe
Q psy16881         26 IGSNMRCVRFSPD--TRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPL--CRTRVFSTFVKQIIP  101 (222)
Q Consensus        26 ~~~~v~~l~~spd--g~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  101 (222)
                      |.+.|.+++|+|+  +++|++|+.||+|++||+.++.........++... +..   +.+.+.  ....+.......+..
T Consensus        52 h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~-V~~---v~~sp~~~~~~l~sgs~dg~I~v  127 (753)
T 3jro_A           52 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS-VNS---VQWAPHEYGPLLLVASSDGKVSV  127 (753)
T ss_dssp             CSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC-EEE---EEECCGGGCSEEEEEETTSEEEE
T ss_pred             CcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCC-eEE---EEECCCCCCCEEEEEeCCCcEEE
Confidence            4788999999988  99999999999999999987752222111222211 111   112222  122223333344555


Q ss_pred             eeeeeec-cCCccccccCCCEEEEEEcC-------------CCCEEEEEeCCCcEEEEeCCCC----ceEEEeccCCccE
Q psy16881        102 TRVGVYG-QDSETVGRHTSAVTSVRFNH-------------KSSLLVSGSVDKTVKLWDVPSL----TCIKTLESHTRYV  163 (222)
Q Consensus       102 ~~~~~~~-~~~~~~~~h~~~i~~l~~~~-------------~~~~l~sg~~dg~I~iwd~~~~----~~~~~~~~~~~~V  163 (222)
                      ++..... .....+.+|...|.++.|+|             +++++++|+.||.|++||++++    .....+.+|...|
T Consensus       128 wdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V  207 (753)
T 3jro_A          128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV  207 (753)
T ss_dssp             EECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred             EEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE
Confidence            5532221 12234567899999999999             4889999999999999999866    4567788999999


Q ss_pred             EEEEEcCC---CCEEEEeeCCCeEEEEeCC----------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        164 TCCTFSCD---DSLLASGSNDKTVTIWDML----------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       164 ~~~~~s~~---~~~l~s~s~D~~i~lwd~~----------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      .+++|+|+   +++|++++.|+.|++||+.                            +.++++++.|+.|++||++.
T Consensus       208 ~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          208 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             EEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            99999999   8999999999999999973                            24699999999999999973

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.87  E-value=3.4e-20  Score=147.77  Aligned_cols=181  Identities=25%  Similarity=0.293  Sum_probs=130.6

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ   98 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (222)
                      ++.+|   .+.|.+++| |++++|++|+.||.|++|++.+.........  +. ..+..   +.+.+.....+.......
T Consensus        13 ~l~~h---~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~--~~-~~v~~---~~~~~~~~~l~~~~~dg~   82 (313)
T 3odt_A           13 TLKGH---DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYT--GQ-GFLNS---VCYDSEKELLLFGGKDTM   82 (313)
T ss_dssp             EECCC---SSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEE--CS-SCEEE---EEEETTTTEEEEEETTSC
T ss_pred             HhhCC---CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeec--CC-ccEEE---EEECCCCCEEEEecCCCe
Confidence            34455   788999999 9999999999999999999987765544421  11 11111   112222222222333333


Q ss_pred             eEeeeeeee--ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcC-CCCEE
Q psy16881         99 IIPTRVGVY--GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSC-DDSLL  175 (222)
Q Consensus        99 ~~~~~~~~~--~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~-~~~~l  175 (222)
                      +..++....  ......+.+|...|.++.|  +++++++++.||.|++||  .++.+..+..|...|.++.|++ +++.+
T Consensus        83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (313)
T 3odt_A           83 INGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKF  158 (313)
T ss_dssp             EEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred             EEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEE
Confidence            443432211  1223455679999999999  478999999999999999  5677788889999999999988 89999


Q ss_pred             EEeeCCCeEEEEeCC---------------------CCeEEEeeCCCcEEEEeCC-CCcc
Q psy16881        176 ASGSNDKTVTIWDML---------------------ATLLASGSNDKTVTIWDMR-GNLS  213 (222)
Q Consensus       176 ~s~s~D~~i~lwd~~---------------------~~~l~s~~~d~~i~iwd~~-~~~~  213 (222)
                      ++++.|+.|++||..                     ...+++++.|+.|++||++ ++..
T Consensus       159 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~  218 (313)
T 3odt_A          159 LTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVL  218 (313)
T ss_dssp             EEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhh
Confidence            999999999999963                     2348999999999999998 4443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.87  E-value=3.6e-20  Score=150.24  Aligned_cols=180  Identities=14%  Similarity=0.214  Sum_probs=126.3

Q ss_pred             eccceEEEEEcCC---CCeEEEecCCCeEEEEeCCCCc-eEEeeccCCCcceeeccceec---CccCCcccceeeeeeee
Q psy16881         26 IGSNMRCVRFSPD---TRLLATGGDDETVTVWRSDDLS-LIMETNDRGHTQGRIEGWGRV---PACPLCRTRVFSTFVKQ   98 (222)
Q Consensus        26 ~~~~v~~l~~spd---g~~l~tgs~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~   98 (222)
                      |...|.+++|+|+   +++|++|+.||+|++|++.+.. ....+.  ++... +......   .+.+.....+.......
T Consensus        64 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~-v~~~~~~~~~~~s~~~~~l~~~~~d~~  140 (357)
T 3i2n_A           64 KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK--GHKEI-INAIDGIGGLGIGEGAPEIVTGSRDGT  140 (357)
T ss_dssp             ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEEC--CCSSC-EEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred             ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEE--ecccc-eEEEeeccccccCCCccEEEEEeCCCe
Confidence            4788999999999   6999999999999999998776 444432  22211 1111111   11222222223333334


Q ss_pred             eEeeeeeeeccCCcccccc----CCCEEEEE----EcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcC
Q psy16881         99 IIPTRVGVYGQDSETVGRH----TSAVTSVR----FNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSC  170 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~h----~~~i~~l~----~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~  170 (222)
                      +..|+..........+..|    ...|.++.    |+++++++++++.||.|++||+++++.... ..|...|.+++|+|
T Consensus       141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~  219 (357)
T 3i2n_A          141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDR  219 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESC
T ss_pred             EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCC
Confidence            5555432211122223223    33788888    678999999999999999999998877544 56788999999999


Q ss_pred             ---CCCEEEEeeCCCeEEEEeCC----------------------------CC-eEEEeeCCCcEEEEeCC
Q psy16881        171 ---DDSLLASGSNDKTVTIWDML----------------------------AT-LLASGSNDKTVTIWDMR  209 (222)
Q Consensus       171 ---~~~~l~s~s~D~~i~lwd~~----------------------------~~-~l~s~~~d~~i~iwd~~  209 (222)
                         ++.+|++++.|+.|++||+.                            .. ++++++.|+.|++||++
T Consensus       220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  290 (357)
T 3i2n_A          220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE  290 (357)
T ss_dssp             SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred             CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence               99999999999999999973                            12 79999999999999987

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.87  E-value=3.9e-20  Score=151.77  Aligned_cols=80  Identities=23%  Similarity=0.350  Sum_probs=74.7

Q ss_pred             CccccccCCCEEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCceEEEec-c-CCccEEEEEEcCCCCEEEEeeCCCeEEEE
Q psy16881        111 SETVGRHTSAVTSVRFNHKSSLLVSGSVDKT-VKLWDVPSLTCIKTLE-S-HTRYVTCCTFSCDDSLLASGSNDKTVTIW  187 (222)
Q Consensus       111 ~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~-I~iwd~~~~~~~~~~~-~-~~~~V~~~~~s~~~~~l~s~s~D~~i~lw  187 (222)
                      ...+.+|...|++++|+|++++|++|+.|++ |+|||+++++++..+. + |...|.+++|+|++++|++++.|++|++|
T Consensus       188 ~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw  267 (355)
T 3vu4_A          188 GVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVF  267 (355)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEE
T ss_pred             cEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEE
Confidence            3456789999999999999999999999998 9999999999999998 5 99999999999999999999999999999


Q ss_pred             eCC
Q psy16881        188 DML  190 (222)
Q Consensus       188 d~~  190 (222)
                      |+.
T Consensus       268 ~~~  270 (355)
T 3vu4_A          268 EIF  270 (355)
T ss_dssp             ESS
T ss_pred             Ecc
Confidence            973

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.87  E-value=1.3e-20  Score=168.83  Aligned_cols=179  Identities=23%  Similarity=0.322  Sum_probs=134.9

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.|++++|+|++++|++|+.||+|++|++.++.......  ++... +..   +.+.+.....+.......+..|+..
T Consensus        54 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--~~~~~-v~~---~~~s~~~~~l~~~~~dg~i~vw~~~  127 (814)
T 3mkq_A           54 TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE--AHPDY-IRS---IAVHPTKPYVLSGSDDLTVKLWNWE  127 (814)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE--CCSSC-EEE---EEECSSSSEEEEEETTSEEEEEEGG
T ss_pred             CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe--cCCCC-EEE---EEEeCCCCEEEEEcCCCEEEEEECC
Confidence            47889999999999999999999999999999887766553  22211 111   1222222223333333345555432


Q ss_pred             eeccCCccccccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceEEEeccCC-ccEEEEEEcC--CCCEEEEeeCC
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT-RYVTCCTFSC--DDSLLASGSND  181 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-~~V~~~~~s~--~~~~l~s~s~D  181 (222)
                      ........+.+|...|.+++|+| +++.+++++.||.|++||+++++....+..+. ..|.+++|+|  ++++|++++.|
T Consensus       128 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  207 (814)
T 3mkq_A          128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD  207 (814)
T ss_dssp             GTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT
T ss_pred             CCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC
Confidence            11122234567899999999999 78899999999999999998877766665554 7899999999  99999999999


Q ss_pred             CeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        182 KTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       182 ~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +.|++||+.                       ..++++++.|+.|++||+.+
T Consensus       208 g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~  259 (814)
T 3mkq_A          208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (814)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            999999973                       35799999999999999973

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.86  E-value=4.2e-20  Score=152.87  Aligned_cols=179  Identities=21%  Similarity=0.270  Sum_probs=123.1

Q ss_pred             ccceEEEEEcCCCC-eEEEecCCCeEEEEeC----CCCce------EEeecc--CCC-----cceeeccceecCccCCcc
Q psy16881         27 GSNMRCVRFSPDTR-LLATGGDDETVTVWRS----DDLSL------IMETND--RGH-----TQGRIEGWGRVPACPLCR   88 (222)
Q Consensus        27 ~~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~----~~~~~------~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~   88 (222)
                      .+.|.+++|+|+|+ +|++|+.||.|++|++    .++..      ......  .++     ....+..   +.+.+...
T Consensus        45 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~s~~~~  121 (425)
T 1r5m_A           45 LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTC---LAWSHDGN  121 (425)
T ss_dssp             CSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEE---EEECTTSS
T ss_pred             cCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEE---EEEcCCCC
Confidence            57799999999999 9999999999999999    77662      222211  011     1111111   11222222


Q ss_pred             cceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE-------------
Q psy16881         89 TRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKT-------------  155 (222)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~-------------  155 (222)
                      ..+.......+..|+  ........+..|...|.+++|+|+++++++++.|+.|++||+++++.+..             
T Consensus       122 ~l~~~~~dg~i~i~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  199 (425)
T 1r5m_A          122 SIVTGVENGELRLWN--KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA  199 (425)
T ss_dssp             EEEEEETTSCEEEEE--TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred             EEEEEeCCCeEEEEe--CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence            222223333344443  11222234567899999999999999999999999999999987655432             


Q ss_pred             -------------------------------------------eccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC--
Q psy16881        156 -------------------------------------------LESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML--  190 (222)
Q Consensus       156 -------------------------------------------~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~--  190 (222)
                                                                 +.+|...|.+++|+|++++|++++.|+.|++||+.  
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  279 (425)
T 1r5m_A          200 ENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG  279 (425)
T ss_dssp             ------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred             ccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence                                                       33567778999999999999999999999999973  


Q ss_pred             --------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        191 --------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       191 --------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                                          ..++++++.|+.|++||++.
T Consensus       280 ~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~  319 (425)
T 1r5m_A          280 NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQ  319 (425)
T ss_dssp             SCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTT
T ss_pred             ccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCC
Confidence                                12788999999999999873

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.86  E-value=5.4e-20  Score=151.57  Aligned_cols=179  Identities=21%  Similarity=0.314  Sum_probs=128.5

Q ss_pred             eccceEEEEEcC-CCCeEEEecCCCeEEEEeCCCCceEEeeccC-----------CCcceeeccceecCccCCcc-ccee
Q psy16881         26 IGSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDR-----------GHTQGRIEGWGRVPACPLCR-TRVF   92 (222)
Q Consensus        26 ~~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~~~   92 (222)
                      |.+.|.+++|+| ++++|++|+.||+|++|++.+..........           ++. ..+..   +.+.+... ..+.
T Consensus        42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~---~~~~~~~~~~l~s  117 (408)
T 4a11_B           42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR-YSVET---VQWYPHDTGMFTS  117 (408)
T ss_dssp             CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS-SCEEE---EEECTTCTTCEEE
T ss_pred             cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC-CcEEE---EEEccCCCcEEEE
Confidence            478999999999 9999999999999999999876543222100           111 11111   11222111 1222


Q ss_pred             eeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEc
Q psy16881         93 STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKS---SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS  169 (222)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~---~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s  169 (222)
                      ......+..|+... ...... ..+...+.++.+++.+   .++++++.|+.|++||+++++.+..+.+|...|.+++|+
T Consensus       118 ~~~d~~i~iwd~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~  195 (408)
T 4a11_B          118 SSFDKTLKVWDTNT-LQTADV-FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWS  195 (408)
T ss_dssp             EETTSEEEEEETTT-TEEEEE-EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEEC
T ss_pred             EeCCCeEEEeeCCC-Ccccee-ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEEC
Confidence            22233444444211 011111 2367788999998754   499999999999999999999999999999999999999


Q ss_pred             CCCC-EEEEeeCCCeEEEEeCC---------------------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        170 CDDS-LLASGSNDKTVTIWDML---------------------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       170 ~~~~-~l~s~s~D~~i~lwd~~---------------------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      |+++ +|++++.|+.|++||+.                                       ..++++++.|+.|++||++
T Consensus       196 ~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (408)
T 4a11_B          196 PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS  275 (408)
T ss_dssp             SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECC
Confidence            9998 58999999999999972                                       2479999999999999998


Q ss_pred             C
Q psy16881        210 G  210 (222)
Q Consensus       210 ~  210 (222)
                      .
T Consensus       276 ~  276 (408)
T 4a11_B          276 N  276 (408)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.86  E-value=1.8e-20  Score=151.83  Aligned_cols=135  Identities=13%  Similarity=0.159  Sum_probs=96.8

Q ss_pred             ccceEEEEEcC---CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         27 GSNMRCVRFSP---DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        27 ~~~v~~l~~sp---dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      +..++.++|+|   ++++|++|+.|++|+|||+++++++.++..  +.                                
T Consensus       178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g--~~--------------------------------  223 (356)
T 2w18_A          178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHI--DD--------------------------------  223 (356)
T ss_dssp             CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEEC--CC--------------------------------
T ss_pred             CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcC--CC--------------------------------
Confidence            56677777877   668899999999999999998877765421  00                                


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCCCE------------EEEEeCCCcEEEEeCCCCceEEEe-----ccCCccEEEE
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKSSL------------LVSGSVDKTVKLWDVPSLTCIKTL-----ESHTRYVTCC  166 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~------------l~sg~~dg~I~iwd~~~~~~~~~~-----~~~~~~V~~~  166 (222)
                                  .+...+.+++|+|++++            +++|+.|++|++||.++++++..+     .+|...+.+.
T Consensus       224 ------------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg  291 (356)
T 2w18_A          224 ------------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG  291 (356)
T ss_dssp             ---------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE
T ss_pred             ------------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc
Confidence                        01123444555555544            478999999999999999887654     3666554444


Q ss_pred             EEcCCCCEEEEeeCCCeEEEEeCC------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        167 TFSCDDSLLASGSNDKTVTIWDML------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       167 ~~s~~~~~l~s~s~D~~i~lwd~~------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      .+  .+..+++++.|++|+|||+.                        +.+|+||+.|++|||||++
T Consensus       292 ~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          292 DV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             EE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred             cc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence            44  48899999999999999984                        3579999999999999963

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.86  E-value=6e-21  Score=164.52  Aligned_cols=157  Identities=11%  Similarity=0.025  Sum_probs=109.9

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceE-EeeccCCCcceeeccceecCccCCc-ccceeeeeeeeeEeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLI-METNDRGHTQGRIEGWGRVPACPLC-RTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  104 (222)
                      .+.|.+++|+|+ ..|++|+.||+|++||+.++... ...  .+|... +.... ..+.... ...+.+.....+..|+.
T Consensus       266 ~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~--~~H~~~-V~sv~-~~~s~~g~~~laS~S~D~tvklWD~  340 (524)
T 2j04_B          266 DSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYD--QVHDSY-ILSVS-TAYSDFEDTVVSTVAVDGYFYIFNP  340 (524)
T ss_dssp             TTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEE--ECSSSC-EEEEE-EECCTTSCCEEEEEETTSEEEEECG
T ss_pred             CCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEe--eccccc-EEEEE-EEcCCCCCeEEEEeccCCeEEEEEC
Confidence            688999999986 48999999999999999865321 112  222221 11110 0111111 12233334445666653


Q ss_pred             eeeccCCccccccCC--CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCC
Q psy16881        105 GVYGQDSETVGRHTS--AVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDK  182 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~--~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~  182 (222)
                      ... .....+.+|..  .|.+++|+|+++.+++++.|++|++||++++.++..+.+|...|++++|+|+++.|++|+.|+
T Consensus       341 ~~~-~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg  419 (524)
T 2j04_B          341 KDI-ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADG  419 (524)
T ss_dssp             GGH-HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTT
T ss_pred             CCC-CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCC
Confidence            211 11112334442  478899999999999999999999999999988888889999999999999999999999999


Q ss_pred             eEEEEeC
Q psy16881        183 TVTIWDM  189 (222)
Q Consensus       183 ~i~lwd~  189 (222)
                      +|++||+
T Consensus       420 tv~lwd~  426 (524)
T 2j04_B          420 SLIITNA  426 (524)
T ss_dssp             EEECCBS
T ss_pred             EEEEEec
Confidence            9999874

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.1e-21  Score=179.01  Aligned_cols=143  Identities=11%  Similarity=0.098  Sum_probs=113.2

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ...+..++|+|++++|++|+.|++|++||+.++...        ....+.                 .        ... 
T Consensus       435 ~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~--------~~~~~~-----------------~--------~l~-  480 (902)
T 2oaj_A          435 VRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQ--------DNASFE-----------------V--------NLS-  480 (902)
T ss_dssp             BCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTT--------TTBCEE-----------------E--------EHH-
T ss_pred             cCCCCcccccccCcEEEEecCCCcEEEEECCCcccc--------CCceEE-----------------e--------ech-
Confidence            345667889999999999999999999998754210        000000                 0        000 


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC------------------------------------
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL------------------------------------  150 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~------------------------------------  150 (222)
                          ...-.+|...|.+++|+|++++|++|+.||+|+|||+.++                                    
T Consensus       481 ----~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (902)
T 2oaj_A          481 ----RTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDR  556 (902)
T ss_dssp             ----HHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGG
T ss_pred             ----hhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccccccc
Confidence                0001258899999999999999999999999999998754                                    


Q ss_pred             ---------ceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCCC------------------------------
Q psy16881        151 ---------TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA------------------------------  191 (222)
Q Consensus       151 ---------~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~------------------------------  191 (222)
                               +++..+.+|...|++++|||+| +||+|+.|++|++||+.+                              
T Consensus       557 ~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~  635 (902)
T 2oaj_A          557 APTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEY  635 (902)
T ss_dssp             CCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEEC
T ss_pred             CCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEec
Confidence                     2467788899999999999999 999999999999999732                              


Q ss_pred             -------CeEEEeeCCCcEEEEeC
Q psy16881        192 -------TLLASGSNDKTVTIWDM  208 (222)
Q Consensus       192 -------~~l~s~~~d~~i~iwd~  208 (222)
                             ..|++|+.|++|++||+
T Consensus       636 ~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          636 GDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             TTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             CCCCCcceEEEEEecCCcEEEEEE
Confidence                   36889999999999998

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1e-20  Score=169.54  Aligned_cols=178  Identities=20%  Similarity=0.249  Sum_probs=130.6

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCC--ceEEeeccCCCcceeeccceecCccCC--cccceeeeeeeeeEee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDL--SLIMETNDRGHTQGRIEGWGRVPACPL--CRTRVFSTFVKQIIPT  102 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  102 (222)
                      .+.|++++|+|+|++|++|+.||+|++|++.+.  ......  .+|... +..   +.+...  ....+.......+..|
T Consensus         9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l--~~h~~~-V~~---l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL--TGHEGP-VWR---VDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE--CCCSSC-EEE---EEECCTTSCSEEEEEETTSCEEEE
T ss_pred             cceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec--cCCcCc-eEE---EEecCCCCCCEEEEEeCCCeEEEE
Confidence            788999999999999999999999999998743  333333  233221 111   111111  1222233333445555


Q ss_pred             eeeeec-cCCccccccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCC--ceEEEeccCCccEEEEEEcC-------
Q psy16881        103 RVGVYG-QDSETVGRHTSAVTSVRFNHK--SSLLVSGSVDKTVKLWDVPSL--TCIKTLESHTRYVTCCTFSC-------  170 (222)
Q Consensus       103 ~~~~~~-~~~~~~~~h~~~i~~l~~~~~--~~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~~~~V~~~~~s~-------  170 (222)
                      +..... .....+..|...|.+++|+|+  ++++++|+.||.|++||++++  .....+.+|...|.++.|+|       
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            532110 022344568999999999999  899999999999999999876  33456678999999999999       


Q ss_pred             ------CCCEEEEeeCCCeEEEEeCC------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        171 ------DDSLLASGSNDKTVTIWDML------------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       171 ------~~~~l~s~s~D~~i~lwd~~------------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                            ++.+|++|+.||.|++||+.                              ..++++++.|+.|++||++.
T Consensus       163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~  238 (753)
T 3jro_A          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  238 (753)
T ss_dssp             ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred             ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence                  58999999999999999862                              34699999999999999975

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.86  E-value=8.9e-20  Score=153.17  Aligned_cols=170  Identities=26%  Similarity=0.486  Sum_probs=127.7

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.|.+++|  ++++|++|+.||+|++||+.+++......  ++... +..   +.+.  ....+.......+..++..
T Consensus       172 h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~-v~~---l~~~--~~~l~s~s~dg~i~vwd~~  241 (435)
T 1p22_A          172 HTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI--HHCEA-VLH---LRFN--NGMMVTCSKDRSIAVWDMA  241 (435)
T ss_dssp             CSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC--CCCSC-EEE---EECC--TTEEEEEETTSCEEEEECS
T ss_pred             CCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEc--CCCCc-EEE---EEEc--CCEEEEeeCCCcEEEEeCC
Confidence            3788999888  78999999999999999999888776653  22221 111   1111  1122222233344444432


Q ss_pred             eeccC--CccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881        106 VYGQD--SETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKT  183 (222)
Q Consensus       106 ~~~~~--~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~  183 (222)
                      .....  ...+.+|...|.++++  +++++++|+.||.|++||+++++++..+.+|...|.++.++  ++++++|+.|+.
T Consensus       242 ~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~  317 (435)
T 1p22_A          242 SPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT  317 (435)
T ss_dssp             SSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSC
T ss_pred             CCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCe
Confidence            11111  1345678999999999  67899999999999999999999999999999999999984  789999999999


Q ss_pred             EEEEeCC---------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        184 VTIWDML---------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       184 i~lwd~~---------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      |++||+.                     ..++++|+.|+.|++||++
T Consensus       318 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~  364 (435)
T 1p22_A          318 IRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV  364 (435)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHH
T ss_pred             EEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECC
Confidence            9999984                     3579999999999999986

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.86  E-value=7.1e-21  Score=158.27  Aligned_cols=137  Identities=15%  Similarity=0.211  Sum_probs=108.5

Q ss_pred             eeccceEEEEEcC--------CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee
Q psy16881         25 HIGSNMRCVRFSP--------DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV   96 (222)
Q Consensus        25 ~~~~~v~~l~~sp--------dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (222)
                      .|.+.|.+|+|+|        |+++||+||.|++|+|||+.+......                                
T Consensus       134 gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~--------------------------------  181 (393)
T 4gq1_A          134 GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA--------------------------------  181 (393)
T ss_dssp             SCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE--------------------------------
T ss_pred             CCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee--------------------------------
Confidence            3578899999998        899999999999999999764322211                                


Q ss_pred             eeeEeeeeeeeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEe-------------------
Q psy16881         97 KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTL-------------------  156 (222)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~-------------------  156 (222)
                                       +.+|...|.+++|+|++. +|++|+.|++|++||+++++.....                   
T Consensus       182 -----------------~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~  244 (393)
T 4gq1_A          182 -----------------GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL  244 (393)
T ss_dssp             -----------------EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred             -----------------ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence                             124778899999999874 8999999999999999876543221                   


Q ss_pred             ------ccCCccEEEEEEc-CCCCEEEEeeCCCeEEEEeCC---------------------------------------
Q psy16881        157 ------ESHTRYVTCCTFS-CDDSLLASGSNDKTVTIWDML---------------------------------------  190 (222)
Q Consensus       157 ------~~~~~~V~~~~~s-~~~~~l~s~s~D~~i~lwd~~---------------------------------------  190 (222)
                            .+|...|.++.|+ +++..|++++.|+++++||+.                                       
T Consensus       245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (393)
T 4gq1_A          245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH  324 (393)
T ss_dssp             C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred             eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence                  3566778888886 799999999999999999973                                       


Q ss_pred             ----CCeEEEeeCCCcEEEEeCCC
Q psy16881        191 ----ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       191 ----~~~l~s~~~d~~i~iwd~~~  210 (222)
                          ..++++|+.|++|++||+..
T Consensus       325 ~~~~~~~~~sgs~Dg~V~lwd~~~  348 (393)
T 4gq1_A          325 PRYMDYFATAHSQHGLIQLINTYE  348 (393)
T ss_dssp             SSCTTEEEEEETTTTEEEEEETTC
T ss_pred             cCCCCEEEEEECCCCEEEEEECCC
Confidence                12577888999999999974

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.86  E-value=4.5e-20  Score=152.18  Aligned_cols=185  Identities=16%  Similarity=0.170  Sum_probs=133.0

Q ss_pred             ccceEEEEEcCC----C---CeEEEecCCCeEEEEeCCCCce-----EEeeccCCCc----ceeeccceecCcc-CCccc
Q psy16881         27 GSNMRCVRFSPD----T---RLLATGGDDETVTVWRSDDLSL-----IMETNDRGHT----QGRIEGWGRVPAC-PLCRT   89 (222)
Q Consensus        27 ~~~v~~l~~spd----g---~~l~tgs~Dg~i~iwd~~~~~~-----~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~   89 (222)
                      ...|.+++|+|+    +   ++|++++.||.|++|++.+...     .....  .+.    ...+......+.. +....
T Consensus        62 ~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~  139 (397)
T 1sq9_A           62 KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD--LLDSDMKKHSFWALKWGASNDRLLSH  139 (397)
T ss_dssp             TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC--CSCTTGGGSCEEEEEEECCC----CE
T ss_pred             CCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec--ccccccCCCcEEEEEEeeccCCCCce
Confidence            788999999999    9   9999999999999999887664     44332  221    1222211111000 22222


Q ss_pred             -ceeeeeeeeeEeeeeeee-----ccCCc-----cc-------cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q psy16881         90 -RVFSTFVKQIIPTRVGVY-----GQDSE-----TV-------GRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT  151 (222)
Q Consensus        90 -~~~~~~~~~~~~~~~~~~-----~~~~~-----~~-------~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~  151 (222)
                       .+.......+..|+....     .....     .+       ..|...|.+++|+|++ ++++++.||.|++||+++++
T Consensus       140 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~  218 (397)
T 1sq9_A          140 RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR  218 (397)
T ss_dssp             EEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE
T ss_pred             EEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc
Confidence             222233334555543320     11222     33       3478899999999999 99999999999999999999


Q ss_pred             eEEEecc---C---CccEEEEEEcCCCCEEEEeeCC---CeEEEEeCC--------------------------------
Q psy16881        152 CIKTLES---H---TRYVTCCTFSCDDSLLASGSND---KTVTIWDML--------------------------------  190 (222)
Q Consensus       152 ~~~~~~~---~---~~~V~~~~~s~~~~~l~s~s~D---~~i~lwd~~--------------------------------  190 (222)
                      .+..+..   |   ...|.+++|+|++++|++++.|   +.|++||+.                                
T Consensus       219 ~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  298 (397)
T 1sq9_A          219 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS  298 (397)
T ss_dssp             EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE
T ss_pred             eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE
Confidence            9999988   8   8999999999999999999999   999999972                                


Q ss_pred             ----CCeEEEeeCCCcEEEEeCC-CCccc
Q psy16881        191 ----ATLLASGSNDKTVTIWDMR-GNLSV  214 (222)
Q Consensus       191 ----~~~l~s~~~d~~i~iwd~~-~~~~~  214 (222)
                          ..+|++++.|+.|++||++ .+...
T Consensus       299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  327 (397)
T 1sq9_A          299 FNDSGETLCSAGWDGKLRFWDVKTKERIT  327 (397)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             ECCCCCEEEEEeCCCeEEEEEcCCCceeE
Confidence                2469999999999999997 43433

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.86  E-value=1.6e-20  Score=154.88  Aligned_cols=178  Identities=14%  Similarity=0.161  Sum_probs=126.2

Q ss_pred             ccceEEEEEc----CCCCe-EEEecCCCeEEEEeCCC------CceEE-----eecc-----CCCcceeeccceecCccC
Q psy16881         27 GSNMRCVRFS----PDTRL-LATGGDDETVTVWRSDD------LSLIM-----ETND-----RGHTQGRIEGWGRVPACP   85 (222)
Q Consensus        27 ~~~v~~l~~s----pdg~~-l~tgs~Dg~i~iwd~~~------~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~   85 (222)
                      ...|.+++|+    |++++ |++++.||.|++||+.+      ...+.     .+..     ..+ ...+..   +.+.+
T Consensus       121 ~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~---~~~~~  196 (397)
T 1sq9_A          121 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP-SQFATS---VDISE  196 (397)
T ss_dssp             GSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSS-CCCCCE---EEECT
T ss_pred             CCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCC-CCCceE---EEECC
Confidence            4889999999    99999 99999999999999886      43322     2110     000 111111   11112


Q ss_pred             CcccceeeeeeeeeEeeeeeeeccCCccccc---c---CCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEe
Q psy16881         86 LCRTRVFSTFVKQIIPTRVGVYGQDSETVGR---H---TSAVTSVRFNHKSSLLVSGSVD---KTVKLWDVPSLTCIKTL  156 (222)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h---~~~i~~l~~~~~~~~l~sg~~d---g~I~iwd~~~~~~~~~~  156 (222)
                      .. ..+.......+..++... ......+..   |   ...|.+++|+|++++|++++.|   +.|++||+++++.+..+
T Consensus       197 ~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~  274 (397)
T 1sq9_A          197 RG-LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL  274 (397)
T ss_dssp             TS-EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred             Cc-eEEEEeCCCcEEEEECCC-CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCccccee
Confidence            22 222222223344443211 111223445   7   8899999999999999999999   99999999999999999


Q ss_pred             cc-------------CCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC---------------------------------
Q psy16881        157 ES-------------HTRYVTCCTFSCDDSLLASGSNDKTVTIWDML---------------------------------  190 (222)
Q Consensus       157 ~~-------------~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~---------------------------------  190 (222)
                      .+             |...|.+++|+|++++|++++.|+.|++||+.                                 
T Consensus       275 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  354 (397)
T 1sq9_A          275 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE  354 (397)
T ss_dssp             CBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSS
T ss_pred             ccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccC
Confidence            88             99999999999999999999999999999962                                 


Q ss_pred             -----------C----------CeEEEeeCCCcEEEEeCCC
Q psy16881        191 -----------A----------TLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       191 -----------~----------~~l~s~~~d~~i~iwd~~~  210 (222)
                                 .          .++++++.|+.|++||+++
T Consensus       355 ~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          355 PGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             CCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             CceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence                       1          3799999999999999863

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.86  E-value=3.5e-20  Score=150.96  Aligned_cols=165  Identities=11%  Similarity=0.093  Sum_probs=114.8

Q ss_pred             EcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee----eec-c
Q psy16881         35 FSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG----VYG-Q  109 (222)
Q Consensus        35 ~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~  109 (222)
                      +.+++++|++|+.||+|++||+.+++.+.....     ..+..   +...+.   .+.......+..|...    .+. .
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~-----~~v~~---~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~  112 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTITT-----PNPRT---GGEHPA---IISRGPCNRLLLLYPGNQITILDSK  112 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEEE-----ECCCT---TCCCCS---EEEECSTTEEEEEETTTEEEEEETT
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEec-----CCcee---eeeCCc---eEEecCCCeEEEEEccCceEEeecC
Confidence            446788999999999999999998876655431     11111   111111   1222222233333211    011 1


Q ss_pred             CCccc----cccCCCEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceEEEecc-CCccEEEEEEcCCCCEEEEeeCCC
Q psy16881        110 DSETV----GRHTSAVTSVRFNH--KSSLLVSGSVDKTVKLWDVPSLTCIKTLES-HTRYVTCCTFSCDDSLLASGSNDK  182 (222)
Q Consensus       110 ~~~~~----~~h~~~i~~l~~~~--~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~-~~~~V~~~~~s~~~~~l~s~s~D~  182 (222)
                      ....+    .+|...|.+++|+|  +++++++++.||.|++||+++++++..... |...|.+++|+|++.+|++|+.|+
T Consensus       113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg  192 (343)
T 3lrv_A          113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG  192 (343)
T ss_dssp             TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS
T ss_pred             CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC
Confidence            11111    14568899999999  999999999999999999999888766543 455799999999999999999999


Q ss_pred             eEEEEeCC-------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        183 TVTIWDML-------------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       183 ~i~lwd~~-------------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      .|++||+.                         ..+|++++ |+.|++||++..
T Consensus       193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~  245 (343)
T 3lrv_A          193 ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD  245 (343)
T ss_dssp             CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS
T ss_pred             EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC
Confidence            99999974                         34688888 449999999843

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.85  E-value=1e-20  Score=153.34  Aligned_cols=162  Identities=16%  Similarity=0.174  Sum_probs=111.4

Q ss_pred             ccceEEEEEcCC----CCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee
Q psy16881         27 GSNMRCVRFSPD----TRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT  102 (222)
Q Consensus        27 ~~~v~~l~~spd----g~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (222)
                      ...|+.|+|+||    ++.+++++.+  +++|.+.+++.+.... .++ ...+..|...+                    
T Consensus       111 ~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~-~g~-d~~V~~~~~s~--------------------  166 (356)
T 2w18_A          111 IREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSG-TLS-DQQVEVMTFAE--------------------  166 (356)
T ss_dssp             EEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEES-SST-TCEEEEEEECT--------------------
T ss_pred             ccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecc-cCC-CCcEEEEEECC--------------------
Confidence            356999999999    9999998854  7889988776665431 111 11122111100                    


Q ss_pred             eeeeeccCCccccccCCCEEEEEEcC---CCCEEEEEeCCCcEEEEeCCCCceEEEeccCCc---cEEEEEEcCCCCEE-
Q psy16881        103 RVGVYGQDSETVGRHTSAVTSVRFNH---KSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTR---YVTCCTFSCDDSLL-  175 (222)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~i~~l~~~~---~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~---~V~~~~~s~~~~~l-  175 (222)
                          .+........|...++.++|++   ++..+++++.|++|||||+++++++.++.+|..   .+.+++|+|+|.++ 
T Consensus       167 ----dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lv  242 (356)
T 2w18_A          167 ----DGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFI  242 (356)
T ss_dssp             ----TSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEE
T ss_pred             ----CCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEE
Confidence                0111112335788888888888   678999999999999999999999999987543   56778999999876 


Q ss_pred             -----------EEeeCCCeEEEEeCCCC--------------------------eEEEeeCCCcEEEEeCC-CCccccC
Q psy16881        176 -----------ASGSNDKTVTIWDMLAT--------------------------LLASGSNDKTVTIWDMR-GNLSVDV  216 (222)
Q Consensus       176 -----------~s~s~D~~i~lwd~~~~--------------------------~l~s~~~d~~i~iwd~~-~~~~~~~  216 (222)
                                 ++|+.|++|++||..+.                          ++|+++.|++|+|||++ +++...+
T Consensus       243 s~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL  321 (356)
T 2w18_A          243 VLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALL  321 (356)
T ss_dssp             EEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             EeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEe
Confidence                       67889999999996422                          46888999999999998 5554443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.2e-19  Score=144.46  Aligned_cols=171  Identities=22%  Similarity=0.290  Sum_probs=120.9

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |...|.+++|  ++++|++++.||+|++||  .........  .+... +......+  ..............+..++..
T Consensus       103 ~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~--~~~~~-v~~~~~~~--~~~~~l~~~~~d~~i~i~d~~  173 (313)
T 3odt_A          103 HQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ--AHNAS-VWDAKVVS--FSENKFLTASADKTIKLWQND  173 (313)
T ss_dssp             CSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE--CCSSC-EEEEEEEE--TTTTEEEEEETTSCEEEEETT
T ss_pred             cccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc--cCCCc-eeEEEEcc--CCCCEEEEEECCCCEEEEecC
Confidence            3788999999  678999999999999999  333333321  11111 11000000  011111222222233344311


Q ss_pred             eeccCCccccc-cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeE
Q psy16881        106 VYGQDSETVGR-HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTV  184 (222)
Q Consensus       106 ~~~~~~~~~~~-h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i  184 (222)
                         .....+.. |...|.+++|++++. +++++.||.|++||+++++.+..+.+|...|.+++|+|++ .|++++.|+.|
T Consensus       174 ---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v  248 (313)
T 3odt_A          174 ---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTV  248 (313)
T ss_dssp             ---EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEE
T ss_pred             ---ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEE
Confidence               11122233 788999999999888 9999999999999999999999999999999999999999 58899999999


Q ss_pred             EEEeCC----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        185 TIWDML----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       185 ~lwd~~----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      ++||+.                      ...+++++.|+.|++||++.
T Consensus       249 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          249 RIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             EEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCG
T ss_pred             EEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCC
Confidence            999984                      12377899999999999984

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.85  E-value=9e-20  Score=149.62  Aligned_cols=80  Identities=18%  Similarity=0.196  Sum_probs=68.4

Q ss_pred             CEEEE--EeCCCcEEEEeCCCCc----------------eEEEeccCCccEEEEEEcCCCCEEEEeeCCCe-EEEEeCC-
Q psy16881        131 SLLVS--GSVDKTVKLWDVPSLT----------------CIKTLESHTRYVTCCTFSCDDSLLASGSNDKT-VTIWDML-  190 (222)
Q Consensus       131 ~~l~s--g~~dg~I~iwd~~~~~----------------~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~-i~lwd~~-  190 (222)
                      ++++.  |+.||.|++||+++++                ++..+.+|...|.+++|+|++++|++++.|++ |++||+. 
T Consensus       148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~  227 (355)
T 3vu4_A          148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED  227 (355)
T ss_dssp             TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred             cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            44444  6889999999998765                26778899999999999999999999999998 9999974 


Q ss_pred             ------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        191 ------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       191 ------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                                              ..+|++++.|++|++||++.
T Consensus       228 ~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~  271 (355)
T 3vu4_A          228 GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN  271 (355)
T ss_dssp             CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred             CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence                                    35799999999999999973

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.84  E-value=5.1e-20  Score=148.78  Aligned_cols=138  Identities=17%  Similarity=0.141  Sum_probs=115.9

Q ss_pred             eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      .|.+.|.+++|+|++++|++++.||+|++|++.+.......                                       
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~---------------------------------------   49 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL---------------------------------------   49 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE---------------------------------------
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccc---------------------------------------
Confidence            34788999999999999999999999999997643210000                                       


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeC-CCCceEEEecc--CCccEEEEEEcCCCCEEEEeeC
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDV-PSLTCIKTLES--HTRYVTCCTFSCDDSLLASGSN  180 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~-~~~~~~~~~~~--~~~~V~~~~~s~~~~~l~s~s~  180 (222)
                             ..+..|...|.+++|+|+++ ++++|+.||.|++||+ ++++. ..+.+  |...|.+++|+| +++|++++.
T Consensus        50 -------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~  120 (342)
T 1yfq_A           50 -------LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASW  120 (342)
T ss_dssp             -------EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEET
T ss_pred             -------eeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcC
Confidence                   00124788999999999999 9999999999999999 77654 67788  999999999999 999999999


Q ss_pred             CCeEEEEeCCC-----------------------------CeEEEeeCCCcEEEEeCCC
Q psy16881        181 DKTVTIWDMLA-----------------------------TLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       181 D~~i~lwd~~~-----------------------------~~l~s~~~d~~i~iwd~~~  210 (222)
                      |+.|++||+..                             ..+++++.|+.|++||++.
T Consensus       121 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~  179 (342)
T 1yfq_A          121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL  179 (342)
T ss_dssp             TSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSC
T ss_pred             CCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCc
Confidence            99999999642                             2388999999999999986

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.84  E-value=1.4e-19  Score=169.37  Aligned_cols=177  Identities=24%  Similarity=0.379  Sum_probs=129.7

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcc--cceeeeeeeeeEeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCR--TRVFSTFVKQIIPTR  103 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  103 (222)
                      |.+.|.+++|+|+|++|++|+.||+|++||+.++..+..+.  ++... +..   +.+.+...  ..........+..|+
T Consensus       656 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~~-v~~---~~~~~~~~~~~l~sg~~d~~v~vwd  729 (1249)
T 3sfz_A          656 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD--EHSEQ-VNC---CHFTNKSNHLLLATGSNDFFLKLWD  729 (1249)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSC-EEE---EEECSSSSCCEEEEEETTSCEEEEE
T ss_pred             CCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEc--CCCCc-EEE---EEEecCCCceEEEEEeCCCeEEEEE
Confidence            47889999999999999999999999999999888776653  22211 111   11111111  111222223344454


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe---------------------------
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL---------------------------  156 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~---------------------------  156 (222)
                      ... ......+.+|...|++++|+|+++++++++.||.|++||+++++....+                           
T Consensus       730 ~~~-~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  808 (1249)
T 3sfz_A          730 LNQ-KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA  808 (1249)
T ss_dssp             TTS-SSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT
T ss_pred             CCC-cchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC
Confidence            211 1122345679999999999999999999999999999998766543322                           


Q ss_pred             ----------------------------ccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC------------------
Q psy16881        157 ----------------------------ESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML------------------  190 (222)
Q Consensus       157 ----------------------------~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~------------------  190 (222)
                                                  .+|...|.+++|+|+++++++++.|+.|++||+.                  
T Consensus       809 dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v  888 (1249)
T 3sfz_A          809 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGV  888 (1249)
T ss_dssp             TSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEE
Confidence                                        1567788899999999999999999999999974                  


Q ss_pred             -----CCeEEEeeCCCcEEEEeCC
Q psy16881        191 -----ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       191 -----~~~l~s~~~d~~i~iwd~~  209 (222)
                           +..+++++.|+.|++||++
T Consensus       889 ~~spdg~~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          889 MFSPDGSSFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEHH
T ss_pred             EECCCCCEEEEEeCCCeEEEEEcc
Confidence                 3579999999999999975

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.84  E-value=2.6e-19  Score=148.77  Aligned_cols=135  Identities=23%  Similarity=0.457  Sum_probs=113.9

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.|.+++|+|++++|++|+.||+|++||+.+......                                         
T Consensus       216 ~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-----------------------------------------  254 (401)
T 4aez_A          216 HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT-----------------------------------------  254 (401)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE-----------------------------------------
T ss_pred             CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE-----------------------------------------
Confidence            378899999999999999999999999999875433221                                         


Q ss_pred             eeccCCccccccCCCEEEEEEcCCC-CEEEEEe--CCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE--eeC
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKS-SLLVSGS--VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS--GSN  180 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~--~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s--~s~  180 (222)
                              +..|...|.+++|+|++ .++++++  .|+.|++||+++++++..+. +...|.+++|+|+++.|++  |+.
T Consensus       255 --------~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~  325 (401)
T 4aez_A          255 --------KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFP  325 (401)
T ss_dssp             --------ECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTT
T ss_pred             --------ecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecC
Confidence                    12477889999999977 5777765  79999999999999888876 5567999999999999999  448


Q ss_pred             CCeEEEEeCC-------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        181 DKTVTIWDML-------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       181 D~~i~lwd~~-------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      |+.|++||+.                         ..++++++.|+.|++||+..
T Consensus       326 dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          326 DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             TCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             CCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            9999999973                         35799999999999999973

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.84  E-value=2.9e-19  Score=154.91  Aligned_cols=171  Identities=13%  Similarity=0.150  Sum_probs=122.3

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee-eeeeEeeeeeee
Q psy16881         29 NMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF-VKQIIPTRVGVY  107 (222)
Q Consensus        29 ~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  107 (222)
                      .+.+++|+|++++++++ .++.+++|+..+++.+.........    ..   +.+.  ....+.... ...+..++....
T Consensus       408 ~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~--~~~l~~~~~~d~~i~~~~~~~~  477 (615)
T 1pgu_A          408 QPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNSPG----SA---VSLS--QNYVAVGLEEGNTIQVFKLSDL  477 (615)
T ss_dssp             CEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECSSCE----EE---EEEC--SSEEEEEETTTSCEEEEETTEE
T ss_pred             CceEEEEcCCCCEEEEe-CCCceEEEeccCCceeeecccCCCc----eE---EEEc--CCEEEEeecCCCeEEEEECCCc
Confidence            46677888888777776 6778888887777766655321110    00   0000  111111111 222333332111


Q ss_pred             ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc-CCccEEEEEEcC----------CCCEEE
Q psy16881        108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES-HTRYVTCCTFSC----------DDSLLA  176 (222)
Q Consensus       108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~-~~~~V~~~~~s~----------~~~~l~  176 (222)
                      ......+..|...|++++|+|++++|++++.||.|++||+.+++++..+.+ |...|++++|+|          ++++|+
T Consensus       478 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~  557 (615)
T 1pgu_A          478 EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA  557 (615)
T ss_dssp             EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEE
T ss_pred             cccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEE
Confidence            000023456899999999999999999999999999999999999988888 999999999999          999999


Q ss_pred             EeeCCCeEEEEeCC------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        177 SGSNDKTVTIWDML------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       177 s~s~D~~i~lwd~~------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +++.|+.|++||+.                        .. |++++.|+.|++||++.
T Consensus       558 ~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          558 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             EEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             EEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            99999999999984                        24 99999999999999874

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.84  E-value=4.6e-19  Score=148.82  Aligned_cols=178  Identities=27%  Similarity=0.481  Sum_probs=129.2

Q ss_pred             eeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeE
Q psy16881         21 RGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQII  100 (222)
Q Consensus        21 ~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (222)
                      ..+.++...|.+++|  ++++|++|+.||+|++||+.+++......  +|... +....   .  .....+.+.....+.
T Consensus       127 ~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~-v~~l~---~--~~~~l~sg~~dg~i~  196 (435)
T 1p22_A          127 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT--GHTGS-VLCLQ---Y--DERVIITGSSDSTVR  196 (435)
T ss_dssp             ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEEC--CCSSC-EEEEE---C--CSSEEEEEETTSCEE
T ss_pred             ecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEc--CCCCc-EEEEE---E--CCCEEEEEcCCCeEE
Confidence            344445667888766  89999999999999999999887776652  23221 11111   1  112222233333455


Q ss_pred             eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE---EEeccCCccEEEEEEcCCCCEEEE
Q psy16881        101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCI---KTLESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~---~~~~~~~~~V~~~~~s~~~~~l~s  177 (222)
                      .|+... +.....+.+|...|.+++|+  ++++++|+.||.|++||+++++..   ..+.+|...|.+++|  ++++|++
T Consensus       197 vwd~~~-~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s  271 (435)
T 1p22_A          197 VWDVNT-GEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVS  271 (435)
T ss_dssp             EEESSS-CCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEE
T ss_pred             EEECCC-CcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEE
Confidence            554321 12223456789999999996  469999999999999999877654   667889999999998  6889999


Q ss_pred             eeCCCeEEEEeCC---------------------CCeEEEeeCCCcEEEEeCC-CCcc
Q psy16881        178 GSNDKTVTIWDML---------------------ATLLASGSNDKTVTIWDMR-GNLS  213 (222)
Q Consensus       178 ~s~D~~i~lwd~~---------------------~~~l~s~~~d~~i~iwd~~-~~~~  213 (222)
                      ++.|+.|++||+.                     ..++++|+.|+.|++||++ +...
T Consensus       272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~  329 (435)
T 1p22_A          272 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL  329 (435)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEE
T ss_pred             EeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEE
Confidence            9999999999984                     3579999999999999998 4443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.84  E-value=1.5e-19  Score=145.21  Aligned_cols=79  Identities=16%  Similarity=0.384  Sum_probs=71.0

Q ss_pred             cccccCCCEEEEEEcCCC----CEEEEEeCCCcEEEEeCCCC--------------------------------------
Q psy16881        113 TVGRHTSAVTSVRFNHKS----SLLVSGSVDKTVKLWDVPSL--------------------------------------  150 (222)
Q Consensus       113 ~~~~h~~~i~~l~~~~~~----~~l~sg~~dg~I~iwd~~~~--------------------------------------  150 (222)
                      .+.+|...|++++|+|++    ++|++++.||.|++||++++                                      
T Consensus       209 ~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (351)
T 3f3f_A          209 KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKA  288 (351)
T ss_dssp             ECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------------
T ss_pred             ecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceee
Confidence            355689999999999998    89999999999999999764                                      


Q ss_pred             --------ceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCCC
Q psy16881        151 --------TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA  191 (222)
Q Consensus       151 --------~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~  191 (222)
                              +.+..+.+|...|.+++|+|++++|++++.|+.|++||+..
T Consensus       289 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          289 ELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY  337 (351)
T ss_dssp             --CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             eecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence                    56677888999999999999999999999999999999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.84  E-value=4.5e-19  Score=149.06  Aligned_cols=173  Identities=28%  Similarity=0.463  Sum_probs=128.8

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.|.+++|+  +++|++|+.||+|++||+.++.......  ++... +.....     .....+.......+..++..
T Consensus       158 h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~h~~~-v~~~~~-----~~~~l~s~s~dg~i~~wd~~  227 (445)
T 2ovr_B          158 HTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLY--GHTST-VRCMHL-----HEKRVVSGSRDATLRVWDIE  227 (445)
T ss_dssp             CSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEEC--CCSSC-EEEEEE-----ETTEEEEEETTSEEEEEESS
T ss_pred             CCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEEC--CCCCc-EEEEEe-----cCCEEEEEeCCCEEEEEECC
Confidence            47889999997  5799999999999999999887776553  22211 111110     01112222223344444422


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                      . ......+.+|...|.++++  +++++++|+.||.|++||+++++++..+.+|...|.++.|  ++.++++++.|+.|+
T Consensus       228 ~-~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~  302 (445)
T 2ovr_B          228 T-GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIR  302 (445)
T ss_dssp             S-CCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEE
T ss_pred             C-CcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEE
Confidence            1 1122345678999999998  6788999999999999999999999999999999999999  789999999999999


Q ss_pred             EEeCC---------------------CCeEEEeeCCCcEEEEeCC-CCcc
Q psy16881        186 IWDML---------------------ATLLASGSNDKTVTIWDMR-GNLS  213 (222)
Q Consensus       186 lwd~~---------------------~~~l~s~~~d~~i~iwd~~-~~~~  213 (222)
                      +||+.                     ..++++++.|+.|++||++ ++..
T Consensus       303 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  352 (445)
T 2ovr_B          303 VWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCL  352 (445)
T ss_dssp             EEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEE
T ss_pred             EEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEE
Confidence            99984                     3579999999999999997 4443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.83  E-value=6.6e-20  Score=157.24  Aligned_cols=162  Identities=11%  Similarity=0.117  Sum_probs=113.0

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      +..-|.+|+|||||+++|+++.|++|+  +......+     .+|... +..   +.+.+..          ....+.+.
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l-----~gh~~~-v~~---V~FsPdg----------~~~~~~~~   72 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI-----NCNSKN-LFH---VKEFPLE----------FENKLDFE   72 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC-----SSBGGG-TEE---EEEECCC----------CCCTTTTS
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--ccccccee-----cCCCcc-EEE---EEECCCC----------CcceEEEE
Confidence            456688999999999999999999999  65443322     122211 111   1111111          00011111


Q ss_pred             eeccCCcccc-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCc-----cEEEEEEcCCCCEEEEee
Q psy16881        106 VYGQDSETVG-RHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTR-----YVTCCTFSCDDSLLASGS  179 (222)
Q Consensus       106 ~~~~~~~~~~-~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~-----~V~~~~~s~~~~~l~s~s  179 (222)
                      . ......+. .|...|.+++|+|+|+.+++++.||.|++||...  ++..+. |+.     .|.+++|||+|++||+|+
T Consensus        73 ~-~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs  148 (588)
T 2j04_A           73 L-AQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN  148 (588)
T ss_dssp             C-CCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE
T ss_pred             e-CCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEc
Confidence            0 01111111 4578899999999999999999999999999543  666666 665     499999999999999999


Q ss_pred             CCCeEEEEeCCCC--------------------------------eEEEeeCCCcEEEEeCCCCc
Q psy16881        180 NDKTVTIWDMLAT--------------------------------LLASGSNDKTVTIWDMRGNL  212 (222)
Q Consensus       180 ~D~~i~lwd~~~~--------------------------------~l~s~~~d~~i~iwd~~~~~  212 (222)
                      .||+|++||+.+.                                .+++++.|++|++||+.+..
T Consensus       149 ~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~  213 (588)
T 2j04_A          149 EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASS  213 (588)
T ss_dssp             TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSS
T ss_pred             CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCc
Confidence            9999999995321                                16788999999999998543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.83  E-value=3.7e-19  Score=142.16  Aligned_cols=162  Identities=24%  Similarity=0.310  Sum_probs=108.3

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeec--cCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETN--DRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      |...+.++.+++++++|++++.||+|++||+.+++......  ...+. ..+......+................+..++
T Consensus       149 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd  227 (318)
T 4ggc_A          149 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ-GAVKAVAWCPWQSNVLATGGGTSDRHIRIWN  227 (318)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCC-SCEEEEEECTTSTTEEEEEECTTTCEEEEEE
T ss_pred             ccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccC-CceEEEEecCCCCcEEEEEecCCCCEEEEEe
Confidence            36789999999999999999999999999998654321110  00010 1111111111110000000111111233332


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCC
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS--VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSND  181 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~--~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D  181 (222)
                      ..  .........+...+..+.|++.++.+++++  .|+.|+|||+++++++.++.+|...|++++|+|++++|+||+.|
T Consensus       228 ~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D  305 (318)
T 4ggc_A          228 VC--SGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD  305 (318)
T ss_dssp             TT--TCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             cc--cccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence            11  011112234677899999999998777654  79999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCC
Q psy16881        182 KTVTIWDML  190 (222)
Q Consensus       182 ~~i~lwd~~  190 (222)
                      ++|++||+.
T Consensus       306 ~~v~iWd~~  314 (318)
T 4ggc_A          306 ETLRLWRCF  314 (318)
T ss_dssp             TEEEEECCS
T ss_pred             CeEEEEECC
Confidence            999999984

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.83  E-value=7e-19  Score=147.91  Aligned_cols=172  Identities=26%  Similarity=0.437  Sum_probs=125.2

Q ss_pred             ccc-eEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         27 GSN-MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        27 ~~~-v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      .+. +.++  +++|++|++|+.||+|++||+.++.....+.  +|.... ....   +.  ....+.+.....+..|+..
T Consensus       118 ~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v-~~~~---~~--~~~l~s~~~dg~i~vwd~~  187 (445)
T 2ovr_B          118 DDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV--GHTGGV-WSSQ---MR--DNIIISGSTDRTLKVWNAE  187 (445)
T ss_dssp             TTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEECC--CCSSCE-EEEE---EE--TTEEEEEETTSCEEEEETT
T ss_pred             CCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEEc--CCCCCE-EEEE---ec--CCEEEEEeCCCeEEEEECC
Confidence            444 4654  4578999999999999999999888776652  332221 1111   10  1112222223344444421


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                       .+.....+.+|...|.++.++  ++.+++|+.||.|++||+++++++..+.+|...|.++.+  ++.++++++.|+.|+
T Consensus       188 -~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~  262 (445)
T 2ovr_B          188 -TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVK  262 (445)
T ss_dssp             -TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEE
T ss_pred             -cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEE
Confidence             111223456799999999995  578999999999999999999999999999999999998  688999999999999


Q ss_pred             EEeCC---------------------CCeEEEeeCCCcEEEEeCC-CCcc
Q psy16881        186 IWDML---------------------ATLLASGSNDKTVTIWDMR-GNLS  213 (222)
Q Consensus       186 lwd~~---------------------~~~l~s~~~d~~i~iwd~~-~~~~  213 (222)
                      +||+.                     ...+++++.|+.|++||++ ++..
T Consensus       263 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  312 (445)
T 2ovr_B          263 VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI  312 (445)
T ss_dssp             EEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             EEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEE
Confidence            99974                     3579999999999999997 4443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.82  E-value=1.7e-18  Score=144.80  Aligned_cols=130  Identities=25%  Similarity=0.440  Sum_probs=110.3

Q ss_pred             eEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeecc
Q psy16881         30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQ  109 (222)
Q Consensus        30 v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (222)
                      .+.|+||++ ++||+|. |++|+|||..++.......                                           
T Consensus       108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~-------------------------------------------  142 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQ-------------------------------------------  142 (420)
T ss_dssp             CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEE-------------------------------------------
T ss_pred             ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEE-------------------------------------------
Confidence            356889975 5777765 9999999998765443220                                           


Q ss_pred             CCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881        110 DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       110 ~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                          +.+|...|++++|+|+|++|++|+.||.|+|||+++++++..+.+|...+.+++++  +.+|++|+.|+.+++||.
T Consensus       143 ----~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~  216 (420)
T 4gga_A          143 ----MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDV  216 (420)
T ss_dssp             ----CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEET
T ss_pred             ----ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeee
Confidence                12477889999999999999999999999999999999999999999999888775  679999999999999997


Q ss_pred             C------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        190 L------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       190 ~------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      .                        ..++++++.|+.+++||.+.
T Consensus       217 ~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~  261 (420)
T 4gga_A          217 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  261 (420)
T ss_dssp             TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             cccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence            4                        35799999999999999873

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.82  E-value=1.5e-18  Score=140.86  Aligned_cols=135  Identities=24%  Similarity=0.330  Sum_probs=100.1

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.|.+++|+|++++|++++.||+|++||+.+......                                         
T Consensus        85 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-----------------------------------------  123 (368)
T 3mmy_A           85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI-----------------------------------------  123 (368)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-----------------------------------------
T ss_pred             ccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceee-----------------------------------------
Confidence            478899999999999999999999999999875443211                                         


Q ss_pred             eeccCCccccccCCCEEEEEE--cCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCC-----------------------
Q psy16881        106 VYGQDSETVGRHTSAVTSVRF--NHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT-----------------------  160 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~--~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-----------------------  160 (222)
                               ..|...|.+++|  +++++++++++.||.|++||+++++.+..+..+.                       
T Consensus       124 ---------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  194 (368)
T 3mmy_A          124 ---------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIV  194 (368)
T ss_dssp             ---------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEE
T ss_pred             ---------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEE
Confidence                     136777888888  7777788888888888888887776655554432                       


Q ss_pred             ------------------ccEEEEEEcCCCCE----EEEeeCCCeEEEEeCC----------------------------
Q psy16881        161 ------------------RYVTCCTFSCDDSL----LASGSNDKTVTIWDML----------------------------  190 (222)
Q Consensus       161 ------------------~~V~~~~~s~~~~~----l~s~s~D~~i~lwd~~----------------------------  190 (222)
                                        ..+.++.+.++...    +++++.|+.|++||+.                            
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (368)
T 3mmy_A          195 YQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIY  274 (368)
T ss_dssp             EECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEEC
T ss_pred             EEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccccccc
Confidence                              22334444433332    8888888888888863                            


Q ss_pred             ----------CCeEEEeeCCCcEEEEeCCC
Q psy16881        191 ----------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       191 ----------~~~l~s~~~d~~i~iwd~~~  210 (222)
                                ..+|++++.|+.|++||++.
T Consensus       275 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~  304 (368)
T 3mmy_A          275 AVNGIAFHPVHGTLATVGSDGRFSFWDKDA  304 (368)
T ss_dssp             CEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             ceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence                      23688888899999999873

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.82  E-value=3e-18  Score=138.31  Aligned_cols=183  Identities=11%  Similarity=0.103  Sum_probs=128.3

Q ss_pred             eeccceEEEEEcCCCC-eEEEecCCCeEEEEeC-CCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee
Q psy16881         25 HIGSNMRCVRFSPDTR-LLATGGDDETVTVWRS-DDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT  102 (222)
Q Consensus        25 ~~~~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (222)
                      .|...|.+++|+|+++ +|++|+.||+|++|++ .+.... ......+.. .+..   +.+.+ ....+.......+..|
T Consensus        54 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~-~v~~---l~~~~-~~~l~s~~~d~~i~iw  127 (342)
T 1yfq_A           54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ-ALTNNEANL-GICR---ICKYG-DDKLIAASWDGLIEVI  127 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE-ECBSCCCCS-CEEE---EEEET-TTEEEEEETTSEEEEE
T ss_pred             ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceE-eccccCCCC-ceEE---EEeCC-CCEEEEEcCCCeEEEE
Confidence            3478899999999999 9999999999999999 766542 221100221 1111   11122 2222223333345555


Q ss_pred             eeeee--------ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-Cc--eEEEeccCCccEEEEEEcC-
Q psy16881        103 RVGVY--------GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS-LT--CIKTLESHTRYVTCCTFSC-  170 (222)
Q Consensus       103 ~~~~~--------~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~-~~--~~~~~~~~~~~V~~~~~s~-  170 (222)
                      +....        ......+. |...|.+++|++++  +++++.|+.|++||+++ +.  .......|...|.+++|+| 
T Consensus       128 d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~  204 (342)
T 1yfq_A          128 DPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPK  204 (342)
T ss_dssp             CHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSG
T ss_pred             cccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCC
Confidence            43220        22223333 88899999999876  99999999999999987 44  3344556788899999999 


Q ss_pred             CCCEEEEeeCCCeEEEEeCC--------------------------------------CCeEEEeeCCCcEEEEeCC-CC
Q psy16881        171 DDSLLASGSNDKTVTIWDML--------------------------------------ATLLASGSNDKTVTIWDMR-GN  211 (222)
Q Consensus       171 ~~~~l~s~s~D~~i~lwd~~--------------------------------------~~~l~s~~~d~~i~iwd~~-~~  211 (222)
                      +++++++++.|+.+++|++.                                      ..+|++++.|+.|++||++ ++
T Consensus       205 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             GGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             CCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence            99999999999999999862                                      1358999999999999998 44


Q ss_pred             ccccC
Q psy16881        212 LSVDV  216 (222)
Q Consensus       212 ~~~~~  216 (222)
                      ....+
T Consensus       285 ~~~~~  289 (342)
T 1yfq_A          285 KIKNF  289 (342)
T ss_dssp             EEEEC
T ss_pred             Hhhhh
Confidence            44433

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.82  E-value=6e-19  Score=148.77  Aligned_cols=185  Identities=12%  Similarity=0.086  Sum_probs=126.2

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc---eEEeeccCCC---cce-------------e--------------
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS---LIMETNDRGH---TQG-------------R--------------   74 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~---~~~~~~~~~~---~~~-------------~--------------   74 (222)
                      .++.+++|+|+|++|+++ .++.|++||+.+++   .+..+.....   ...             .              
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            468899999999977665 57899999998887   4443321100   000             0              


Q ss_pred             e------------------ccceecCccCCcccc-eeeeeeeeeEeeeeee-eccCCcccc--ccCCCEEEEEEcCCCCE
Q psy16881         75 I------------------EGWGRVPACPLCRTR-VFSTFVKQIIPTRVGV-YGQDSETVG--RHTSAVTSVRFNHKSSL  132 (222)
Q Consensus        75 ~------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~--~h~~~i~~l~~~~~~~~  132 (222)
                      .                  .....+.+.+..... +.......+..|+... .+.....+.  .|...|.+++|+|++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence            0                  000001112222221 1222233444554321 111222332  46788999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCceEE----EeccCCccEEEEEEcCC---CCEEEEeeCCCeEEEEeCC---------------
Q psy16881        133 LVSGSVDKTVKLWDVPSLTCIK----TLESHTRYVTCCTFSCD---DSLLASGSNDKTVTIWDML---------------  190 (222)
Q Consensus       133 l~sg~~dg~I~iwd~~~~~~~~----~~~~~~~~V~~~~~s~~---~~~l~s~s~D~~i~lwd~~---------------  190 (222)
                      |++|+.+|.|++|++.+.+...    .+.+|...|.+++|+|+   +++|++++.|++|++||+.               
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~  243 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF  243 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence            9999999999999998766443    67789999999999999   9999999999999999973               


Q ss_pred             --------CCeEEEeeCCCcEEEEeCC-CCcc
Q psy16881        191 --------ATLLASGSNDKTVTIWDMR-GNLS  213 (222)
Q Consensus       191 --------~~~l~s~~~d~~i~iwd~~-~~~~  213 (222)
                              ..+|++++.|+.|++||++ +++.
T Consensus       244 v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~  275 (450)
T 2vdu_B          244 VSSICCGKDYLLLSAGGDDKIFAWDWKTGKNL  275 (450)
T ss_dssp             EEEEEECSTTEEEEEESSSEEEEEETTTCCEE
T ss_pred             eEEEEECCCCEEEEEeCCCeEEEEECCCCcEe
Confidence                    3479999999999999998 4443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.81  E-value=3.3e-19  Score=150.38  Aligned_cols=127  Identities=16%  Similarity=0.153  Sum_probs=100.5

Q ss_pred             eccceEEEEEcCCCCeEE----EecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEe
Q psy16881         26 IGSNMRCVRFSPDTRLLA----TGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIP  101 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~----tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (222)
                      +.+.|.+++|+|+|++|+    +|+.|++|++||+.+...       +.... ..     +                .. 
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~-------~~~~~-~~-----~----------------~~-  140 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSN-------EAKQQ-KR-----P----------------FA-  140 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHC-------TTCSS-CC-----C----------------SE-
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEcccccc-------CCcCC-cc-----e----------------ee-
Confidence            356799999999999999    899999999999753210       00000 00     0                00 


Q ss_pred             eeeeeeccCCccccccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeC
Q psy16881        102 TRVGVYGQDSETVGRHTSAVTSVRFNHK-SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN  180 (222)
Q Consensus       102 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~  180 (222)
                              ....+.+|...|.+++|+|+ ++++++++.||+|++||++++..+....+|...|.+++|+|+|++|++|+.
T Consensus       141 --------~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~  212 (434)
T 2oit_A          141 --------YHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQ  212 (434)
T ss_dssp             --------EEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEET
T ss_pred             --------eeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcC
Confidence                    00123468899999999998 789999999999999999988777667778889999999999999999999


Q ss_pred             CCeEEEEeCC
Q psy16881        181 DKTVTIWDML  190 (222)
Q Consensus       181 D~~i~lwd~~  190 (222)
                      |++|++||+.
T Consensus       213 dg~v~iwd~~  222 (434)
T 2oit_A          213 NGTVVQYLPT  222 (434)
T ss_dssp             TSCEEEECTT
T ss_pred             CCcEEEEccC
Confidence            9999999975

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.74  E-value=9.2e-16  Score=126.24  Aligned_cols=173  Identities=15%  Similarity=0.148  Sum_probs=119.3

Q ss_pred             cceEEEEEcCCCCeE-EEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee-eeeeEeeeee
Q psy16881         28 SNMRCVRFSPDTRLL-ATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF-VKQIIPTRVG  105 (222)
Q Consensus        28 ~~v~~l~~spdg~~l-~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  105 (222)
                      ..+.+++|+|+|++| ++++.|++|++||+.+++.........    .+..   +.+.+.......... ...+..++..
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~----~v~~---~~~spdg~~l~~~~~~~~~v~v~d~~  104 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS----SPQG---VAVSPDGKQVYVTNMASSTLSVIDTT  104 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS----SEEE---EEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC----Cccc---eEECCCCCEEEEEECCCCEEEEEECC
Confidence            558999999999976 677799999999999887766553221    1111   112222222222221 1233333321


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEE-EEeeCCCe
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLL-VSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLL-ASGSNDKT  183 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l-~s~s~D~~  183 (222)
                      . ......+. +...+.+++|+++++.+ ++++.++.|++||+++++.+..+..+. .+.+++|+|+++.| ++++.++.
T Consensus       105 ~-~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~  181 (391)
T 1l0q_A          105 S-NTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMS  181 (391)
T ss_dssp             T-TEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTE
T ss_pred             C-CeEEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCE
Confidence            0 11111222 34568999999999976 788889999999999998888877654 57899999999887 57788999


Q ss_pred             EEEEeCC----------------------CCeEEEee---CCCcEEEEeCCC
Q psy16881        184 VTIWDML----------------------ATLLASGS---NDKTVTIWDMRG  210 (222)
Q Consensus       184 i~lwd~~----------------------~~~l~s~~---~d~~i~iwd~~~  210 (222)
                      |++||+.                      ..++++++   .++.|++||++.
T Consensus       182 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~  233 (391)
T 1l0q_A          182 ISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT  233 (391)
T ss_dssp             EEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             EEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence            9999984                      34566666   689999999974

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.72  E-value=2.8e-17  Score=138.59  Aligned_cols=150  Identities=14%  Similarity=0.182  Sum_probs=109.2

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY  107 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (222)
                      ..++.+++++++.+|++++.|+ +++|+..+....  ........                 .        ...      
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~--~~~~~~~~-----------------~--------~~~------   82 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ--NKPGDDPN-----------------K--------IVD------   82 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC--CCTTCCTT-----------------C--------EEE------
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh--cccccCcc-----------------c--------ccc------
Confidence            4578899999999999999888 888875321100  00000000                 0        000      


Q ss_pred             ccCCccccccCCCEEEEEEcCCCCEEE----EEeCCCcEEEEeCCCC--------c---eEEEeccCCccEEEEEEcCC-
Q psy16881        108 GQDSETVGRHTSAVTSVRFNHKSSLLV----SGSVDKTVKLWDVPSL--------T---CIKTLESHTRYVTCCTFSCD-  171 (222)
Q Consensus       108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~----sg~~dg~I~iwd~~~~--------~---~~~~~~~~~~~V~~~~~s~~-  171 (222)
                      ... ...-.+...|.+++|++++++|+    +|+.|+.|+|||+++.        +   .+..+.+|...|.+++|+|+ 
T Consensus        83 ~~~-~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~  161 (434)
T 2oit_A           83 KVQ-GLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV  161 (434)
T ss_dssp             CCC-CEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC
T ss_pred             cCc-cccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC
Confidence            000 00012567899999999999999    8899999999998654        1   24556678999999999998 


Q ss_pred             CCEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCCCc
Q psy16881        172 DSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRGNL  212 (222)
Q Consensus       172 ~~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~~~  212 (222)
                      +.+|++++.|++|++||+.                       +.+|++|+.|++|++||+++..
T Consensus       162 ~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~  225 (434)
T 2oit_A          162 PSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQE  225 (434)
T ss_dssp             TTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCE
T ss_pred             CCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcc
Confidence            8999999999999999974                       3579999999999999998443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.71  E-value=6.9e-16  Score=128.64  Aligned_cols=140  Identities=18%  Similarity=0.211  Sum_probs=114.3

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ...+.+++|+|+++++++++.|++|++||+.+++......                                        
T Consensus       122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~----------------------------------------  161 (433)
T 3bws_A          122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSP----------------------------------------  161 (433)
T ss_dssp             SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECC----------------------------------------
T ss_pred             CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecC----------------------------------------
Confidence            3456789999988888999999999999988655432210                                        


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEE-EeeCCCeEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA-SGSNDKTVT  185 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~-s~s~D~~i~  185 (222)
                          ...+.+|...|.+++|+++++++++++.|+.|++||+++++.+..+..|...+.+++|+|+++.++ +++.|+.|+
T Consensus       162 ----~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~  237 (433)
T 3bws_A          162 ----PEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDIS  237 (433)
T ss_dssp             ----CHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ----cccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEE
Confidence                001235788899999999999999999999999999999999888888899999999999999885 555899999


Q ss_pred             EEeCC----------------------CCeEEEee--------CCCcEEEEeCCC
Q psy16881        186 IWDML----------------------ATLLASGS--------NDKTVTIWDMRG  210 (222)
Q Consensus       186 lwd~~----------------------~~~l~s~~--------~d~~i~iwd~~~  210 (222)
                      +||+.                      ...+++++        .|+.|++||+++
T Consensus       238 ~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~  292 (433)
T 3bws_A          238 VIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK  292 (433)
T ss_dssp             EEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT
T ss_pred             EEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC
Confidence            99974                      34677776        488999999974

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.71  E-value=3.4e-15  Score=122.87  Aligned_cols=174  Identities=14%  Similarity=0.082  Sum_probs=117.3

Q ss_pred             ccceEEEEEcCCCCeEE-EecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceee-eeeeeeEeeee
Q psy16881         27 GSNMRCVRFSPDTRLLA-TGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFS-TFVKQIIPTRV  104 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~-tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  104 (222)
                      ...+.+++|+|++++|+ +++.|++|++||+.+++.........  .  +..   +.+.+........ .....+..++.
T Consensus        73 ~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~--~--~~~---~~~s~dg~~l~~~~~~~~~v~~~d~  145 (391)
T 1l0q_A           73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK--S--PLG---LALSPDGKKLYVTNNGDKTVSVINT  145 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS--S--EEE---EEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC--C--cce---EEECCCCCEEEEEeCCCCEEEEEEC
Confidence            34799999999999775 55678999999999887765543211  1  111   1112222212111 11223333332


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEee---C
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLL-VSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS---N  180 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s---~  180 (222)
                      .. ......+. +...+..++|+|+++.+ ++++.++.|++||+++++.+..+.. ...+.+++|+|++++|++++   .
T Consensus       146 ~~-~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~  222 (391)
T 1l0q_A          146 VT-KAVINTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKY  222 (391)
T ss_dssp             TT-TEEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSS
T ss_pred             CC-CcEEEEEe-cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcC
Confidence            10 11111222 23457899999999876 6778899999999999888777654 56789999999999999888   6


Q ss_pred             CCeEEEEeCC----------------------CCeE-EEeeCCCcEEEEeCCC
Q psy16881        181 DKTVTIWDML----------------------ATLL-ASGSNDKTVTIWDMRG  210 (222)
Q Consensus       181 D~~i~lwd~~----------------------~~~l-~s~~~d~~i~iwd~~~  210 (222)
                      ++.|++||+.                      ...+ ++++.|+.|++||+.+
T Consensus       223 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          223 FNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             CCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             CCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence            8999999974                      2334 6778899999999973

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.69  E-value=9e-15  Score=122.38  Aligned_cols=181  Identities=12%  Similarity=0.056  Sum_probs=122.1

Q ss_pred             ccceEEEEEcCCCCeEEEecCCC---eEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee---eeeeE
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDE---TVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF---VKQII  100 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  100 (222)
                      .+.|.+++|+|||++|++++.|+   +|++||+.+++.........    .+..   ..++++....++...   ...+.
T Consensus       178 ~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~----~~~~---~~~spdg~~la~~~~~~g~~~i~  250 (415)
T 2hqs_A          178 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR----HNGA---PAFSPDGSKLAFALSKTGSLNLY  250 (415)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS----CEEE---EEECTTSSEEEEEECTTSSCEEE
T ss_pred             CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCC----cccC---EEEcCCCCEEEEEEecCCCceEE
Confidence            67899999999999999999886   99999998876543221111    1111   122233332332221   11233


Q ss_pred             eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881        101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV-DK--TVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~-dg--~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s  177 (222)
                      .++..  ......+..|...+..++|+|+|+.|+.++. ++  .|.+||+.+++. ..+..+...+.+++|+|+|++|++
T Consensus       251 ~~d~~--~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~  327 (415)
T 2hqs_A          251 VMDLA--SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVM  327 (415)
T ss_dssp             EEETT--TCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEE
T ss_pred             EEECC--CCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEE
Confidence            33211  1122344567788999999999998888876 45  577779887764 445566778999999999999998


Q ss_pred             eeCC---CeEEEEeCC---------------------CCeEEEeeCCC---cEEEEeCCCCccccCC
Q psy16881        178 GSND---KTVTIWDML---------------------ATLLASGSNDK---TVTIWDMRGNLSVDVP  217 (222)
Q Consensus       178 ~s~D---~~i~lwd~~---------------------~~~l~s~~~d~---~i~iwd~~~~~~~~~~  217 (222)
                      ++.+   ..|.+||+.                     +..|++++.++   .|++||+.+.....++
T Consensus       328 ~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~  394 (415)
T 2hqs_A          328 VSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP  394 (415)
T ss_dssp             EEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred             EECcCCceEEEEEECCCCCEEEecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEee
Confidence            8764   589999974                     34677777666   7999999866555444

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.69  E-value=2.5e-15  Score=125.30  Aligned_cols=135  Identities=11%  Similarity=0.110  Sum_probs=110.3

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.|.+++|+|+++++++++.|++|++||+++.+.....                                        
T Consensus       168 ~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~----------------------------------------  207 (433)
T 3bws_A          168 KLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV----------------------------------------  207 (433)
T ss_dssp             TCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE----------------------------------------
T ss_pred             cCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE----------------------------------------
Confidence            3567999999999999999999999999998754433211                                        


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEee-----
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLV-SGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS-----  179 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~-sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s-----  179 (222)
                               ..|...+.+++|+|+++.++ +++.|+.|++||+++++.+..+..+ ..+.+++|+|+++.|++++     
T Consensus       208 ---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~  277 (433)
T 3bws_A          208 ---------DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASN  277 (433)
T ss_dssp             ---------ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCT
T ss_pred             ---------cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCc
Confidence                     13567789999999998775 5558999999999999888877664 4589999999999999888     


Q ss_pred             ---CCCeEEEEeCC----------------------C-CeEEEeeCCCcEEEEeCCC
Q psy16881        180 ---NDKTVTIWDML----------------------A-TLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       180 ---~D~~i~lwd~~----------------------~-~~l~s~~~d~~i~iwd~~~  210 (222)
                         .|+.|++||+.                      . .++++++.|+.|++||+++
T Consensus       278 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~  334 (433)
T 3bws_A          278 QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE  334 (433)
T ss_dssp             TCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred             cccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence               58899999974                      2 2567778899999999984

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.65  E-value=4.6e-14  Score=110.70  Aligned_cols=177  Identities=14%  Similarity=0.081  Sum_probs=111.9

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCC-CceEEeeccCCCcceeeccceecCccCCcccceeeeee--eeeEeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDD-LSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV--KQIIPTR  103 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  103 (222)
                      ...|.+++|+|+|++|++++ ++.|++||+.+ +.......  .+....+..   ..+.+.....++....  .....+.
T Consensus        41 ~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~---~~~spdg~~l~~~~~~~~~~~~l~~  114 (297)
T 2ojh_A           41 PELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDT--GFATICNND---HGISPDGALYAISDKVEFGKSAIYL  114 (297)
T ss_dssp             SSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCC--TTCCCBCSC---CEECTTSSEEEEEECTTTSSCEEEE
T ss_pred             CcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecc--ccccccccc---eEECCCCCEEEEEEeCCCCcceEEE
Confidence            77899999999999999886 88999999987 65543321  111111111   1122222222222210  1112222


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCC-CCceEEEeccCCccEEEEEEcCCCCEEEEee-C
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLV-SGSVDKTVKLWDVP-SLTCIKTLESHTRYVTCCTFSCDDSLLASGS-N  180 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~-sg~~dg~I~iwd~~-~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s-~  180 (222)
                      ..........+.. ...+..++|+|+++.++ +++.++.++||++. .......+..+...+.++.|+|+++.|+.++ .
T Consensus       115 ~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  193 (297)
T 2ojh_A          115 LPSTGGTPRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR  193 (297)
T ss_dssp             EETTCCCCEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT
T ss_pred             EECCCCceEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC
Confidence            1111111222222 33488899999999766 78889999999853 2233456667778899999999999888766 5


Q ss_pred             CCeEEEEeCC------------------------CCeEEEeeCC-----------CcEEEEeCCC
Q psy16881        181 DKTVTIWDML------------------------ATLLASGSND-----------KTVTIWDMRG  210 (222)
Q Consensus       181 D~~i~lwd~~------------------------~~~l~s~~~d-----------~~i~iwd~~~  210 (222)
                      ++.+++|++.                        ...+++++.+           +.|.+||+.+
T Consensus       194 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~  258 (297)
T 2ojh_A          194 TGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG  258 (297)
T ss_dssp             TSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred             CCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence            8899999862                        3456666654           5699999974

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.53  E-value=5e-13  Score=115.60  Aligned_cols=136  Identities=15%  Similarity=0.192  Sum_probs=103.5

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEEeC--CCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         29 NMRCVRFSPDTRLLATGGDDETVTVWRS--DDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        29 ~v~~l~~spdg~~l~tgs~Dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      .+..++|+|||++|++++.|++|++||+  .+.+.+.+.                                         
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i-----------------------------------------  218 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI-----------------------------------------  218 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-----------------------------------------
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE-----------------------------------------
Confidence            3888999999999999999999999998  443322211                                         


Q ss_pred             eccCCccccccCCCEEEEEEcC----CCCEEEEEeC-CCcEEEEeCCCCceEEEeccC-----------CccEEEEEEcC
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNH----KSSLLVSGSV-DKTVKLWDVPSLTCIKTLESH-----------TRYVTCCTFSC  170 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~----~~~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~-----------~~~V~~~~~s~  170 (222)
                              . +...+..++|+|    +|+++++++. ++.|.+||..+++++..+..+           ...+..+.+++
T Consensus       219 --------~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~  289 (543)
T 1nir_A          219 --------K-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH  289 (543)
T ss_dssp             --------E-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred             --------e-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC
Confidence                    0 223467899999    9999998884 899999999999988877642           22688999999


Q ss_pred             CCC-EEEEeeCCCeEEEEeCC------------------------CCe-EEEeeCCCcEEEEeCC-CCccc
Q psy16881        171 DDS-LLASGSNDKTVTIWDML------------------------ATL-LASGSNDKTVTIWDMR-GNLSV  214 (222)
Q Consensus       171 ~~~-~l~s~s~D~~i~lwd~~------------------------~~~-l~s~~~d~~i~iwd~~-~~~~~  214 (222)
                      +++ ++++...+++|.+||..                        ..+ ++++..+++|.+||++ +++..
T Consensus       290 ~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~  360 (543)
T 1nir_A          290 EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA  360 (543)
T ss_dssp             SSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             CCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE
Confidence            765 45567788999999963                        233 4455568899999998 44443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.51  E-value=1.3e-12  Score=116.26  Aligned_cols=152  Identities=13%  Similarity=0.084  Sum_probs=97.7

Q ss_pred             ccceEEEEEcCCCCeEEEecC-CC-----eEEEEeCCCCceEEeeccCCCcc---------e------ee---ccceecC
Q psy16881         27 GSNMRCVRFSPDTRLLATGGD-DE-----TVTVWRSDDLSLIMETNDRGHTQ---------G------RI---EGWGRVP   82 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~-Dg-----~i~iwd~~~~~~~~~~~~~~~~~---------~------~~---~~~~~~~   82 (222)
                      ...+..++|||||++|++++. |+     +|++||+.++............+         .      .+   .......
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            345899999999999999998 88     99999998877654432111110         0      00   0001122


Q ss_pred             ccCCcccceeeeeeeeeEeeeeeeecc---CCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccC
Q psy16881         83 ACPLCRTRVFSTFVKQIIPTRVGVYGQ---DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESH  159 (222)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~  159 (222)
                      ++++....++... ..+..++..  ..   ....+..|...+..++|+|+|++++.++ ++.|.+||+.+++.......+
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~--~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~  191 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLK--QEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADG  191 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESS--SCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred             ECCCCCEEEEEeC-CcEEEEECC--CCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCC
Confidence            3333333333322 333333321  12   2334556778899999999999999887 469999999887765544433


Q ss_pred             Ccc----------------EEEEEEcCCCCEEEEeeCCC
Q psy16881        160 TRY----------------VTCCTFSCDDSLLASGSNDK  182 (222)
Q Consensus       160 ~~~----------------V~~~~~s~~~~~l~s~s~D~  182 (222)
                      ...                +..+.|||+|+.|++++.|+
T Consensus       192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~  230 (741)
T 2ecf_A          192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE  230 (741)
T ss_dssp             CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred             ccceeccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence            332                36799999999999988765

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.49  E-value=3.8e-12  Score=106.42  Aligned_cols=156  Identities=12%  Similarity=0.095  Sum_probs=101.1

Q ss_pred             ccceEEEEEcCCCCeEE-EecCCCe--EEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee---eeE
Q psy16881         27 GSNMRCVRFSPDTRLLA-TGGDDET--VTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK---QII  100 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~-tgs~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  100 (222)
                      ...+.+++|+|||++|+ +++.|+.  |++||+.++......   .+. ..+..   ..++++....++.....   .+.
T Consensus       222 ~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~---~~~-~~~~~---~~~spdg~~l~~~s~~~g~~~i~  294 (415)
T 2hqs_A          222 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT---DGR-SNNTE---PTWFPDSQNLAFTSDQAGRPQVY  294 (415)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC---CCS-SCEEE---EEECTTSSEEEEEECTTSSCEEE
T ss_pred             CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCc---CCC-Ccccc---eEECCCCCEEEEEECCCCCcEEE
Confidence            56799999999999877 6666655  899999876543221   111 11111   12223333233332211   222


Q ss_pred             eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881        101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVD---KTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s  177 (222)
                      .++.  .......+..+...+..++|+|+|++|++++.+   ..|.+||+.+++. ..+..+. .+.+++|+|+|+.|++
T Consensus       295 ~~d~--~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~  370 (415)
T 2hqs_A          295 KVNI--NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIY  370 (415)
T ss_dssp             EEET--TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEE
T ss_pred             EEEC--CCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEE
Confidence            2221  111222233456778899999999998888764   5899999998776 3455554 7899999999999999


Q ss_pred             eeCCC---eEEEEeCCCCe
Q psy16881        178 GSNDK---TVTIWDMLATL  193 (222)
Q Consensus       178 ~s~D~---~i~lwd~~~~~  193 (222)
                      ++.++   .|.+||+.+..
T Consensus       371 ~s~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          371 SSSQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             EEEETTEEEEEEEETTSCC
T ss_pred             EEcCCCccEEEEEECCCCc
Confidence            88877   79999986543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.47  E-value=8.6e-12  Score=100.08  Aligned_cols=176  Identities=14%  Similarity=0.172  Sum_probs=106.9

Q ss_pred             eccceEEEEEcCCCCeEEEecCC-CeEEEEeCC--CCceE--EeeccCCCcceeeccceecCccCCcccceeeee-eeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDD-ETVTVWRSD--DLSLI--METNDRGHTQGRIEGWGRVPACPLCRTRVFSTF-VKQI   99 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~D-g~i~iwd~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   99 (222)
                      +...+.+++|+|+|++|++++.+ +.|++|+++  ++...  .......    ....   +.+.+.......... ...+
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~s~dg~~l~~~~~~~~~i  108 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG----SLTH---ISTDHQGQFVFVGSYNAGNV  108 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS----CCSE---EEECTTSSEEEEEETTTTEE
T ss_pred             cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC----CCcE---EEEcCCCCEEEEEecCCCeE
Confidence            35678899999999988888876 999999987  44322  2221111    0110   111122221111211 1223


Q ss_pred             Eeeeee--eeccCCccccccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC-CceEE----Eecc-CCccEEEEEEcC
Q psy16881        100 IPTRVG--VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS-VDKTVKLWDVPS-LTCIK----TLES-HTRYVTCCTFSC  170 (222)
Q Consensus       100 ~~~~~~--~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~-~dg~I~iwd~~~-~~~~~----~~~~-~~~~V~~~~~s~  170 (222)
                      ..++..  ........+. ....+.+++|+|+++++++++ .++.|++||+.+ ++...    .+.. ....+..++|+|
T Consensus       109 ~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  187 (343)
T 1ri6_A          109 SVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP  187 (343)
T ss_dssp             EEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT
T ss_pred             EEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC
Confidence            333321  0001111122 234577899999999888777 899999999987 54422    2222 234688999999


Q ss_pred             CCCEEEEe-eCCCeEEEEeCC---------------------------------CCeEE-EeeCCCcEEEEeCC
Q psy16881        171 DDSLLASG-SNDKTVTIWDML---------------------------------ATLLA-SGSNDKTVTIWDMR  209 (222)
Q Consensus       171 ~~~~l~s~-s~D~~i~lwd~~---------------------------------~~~l~-s~~~d~~i~iwd~~  209 (222)
                      ++++++++ ..++.+.+||+.                                 ...++ +...++.|++||++
T Consensus       188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            99977654 488999999972                                 12344 55578899999997

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.43  E-value=2.6e-11  Score=97.80  Aligned_cols=183  Identities=9%  Similarity=0.005  Sum_probs=113.2

Q ss_pred             ccceEEEEEcCCCCeE-EEecCCCeEEEEeCCCCceEEeeccCCCcc-eeecc--ceecCccCCcccceeeee--eeeeE
Q psy16881         27 GSNMRCVRFSPDTRLL-ATGGDDETVTVWRSDDLSLIMETNDRGHTQ-GRIEG--WGRVPACPLCRTRVFSTF--VKQII  100 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l-~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~  100 (222)
                      +..+..++|+|+|+++ ++...++.|.+||..+++............ .....  ...+.+.+..........  ...+.
T Consensus        88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~  167 (353)
T 3vgz_A           88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW  167 (353)
T ss_dssp             SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred             CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence            4557788999999955 555668999999999887765543211000 00000  000111112121111111  11222


Q ss_pred             eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc----CCccEEEEEEcCCCCEEE
Q psy16881        101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES----HTRYVTCCTFSCDDSLLA  176 (222)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~----~~~~V~~~~~s~~~~~l~  176 (222)
                      .++.. .......+..+...+..+.|+|+++++++++.++.|.+||+.+++.+..+..    +...+..++|+|+++.++
T Consensus       168 ~~d~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  246 (353)
T 3vgz_A          168 VVDGG-NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF  246 (353)
T ss_dssp             EEETT-TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred             EEcCC-CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence            22211 0011111222344467889999999999999999999999999988776654    455688899999999777


Q ss_pred             EeeC-CCeEEEEeCC---------------------CC-eEEEeeCCCcEEEEeCCC
Q psy16881        177 SGSN-DKTVTIWDML---------------------AT-LLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       177 s~s~-D~~i~lwd~~---------------------~~-~l~s~~~d~~i~iwd~~~  210 (222)
                      +++. ++.|.+||+.                     .. ++++...++.|.+||+.+
T Consensus       247 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  303 (353)
T 3vgz_A          247 ITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKS  303 (353)
T ss_dssp             EEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence            6664 4899999973                     23 344445789999999973

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.43  E-value=1.2e-11  Score=99.82  Aligned_cols=175  Identities=10%  Similarity=0.047  Sum_probs=111.3

Q ss_pred             ccceEEEEEcCCCCeEEEecC-------CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee-eee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGD-------DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF-VKQ   98 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   98 (222)
                      +..+..++|+|+|++|++++.       +++|.+||..+++.......... .   ..   +.............. ...
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~---~~---~~~s~dg~~l~v~~~~~~~  112 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK-P---FG---ATINNTTQTLWFGNTVNSA  112 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC-C---CS---EEEETTTTEEEEEETTTTE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC-c---ce---EEECCCCCEEEEEecCCCE
Confidence            566888999999998887764       57899999998876655432111 0   00   011111111111111 112


Q ss_pred             eEeeeeeeeccCCccccccC---------CCEEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceEEEeccCCccEEEEE
Q psy16881         99 IIPTRVGVYGQDSETVGRHT---------SAVTSVRFNHKSSLLVSGS--VDKTVKLWDVPSLTCIKTLESHTRYVTCCT  167 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~h~---------~~i~~l~~~~~~~~l~sg~--~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~  167 (222)
                      +..++.. .......+..+.         ..+..+.|+|+++.++.++  .++.|.+||..+++.+..+..+...+..++
T Consensus       113 v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  191 (353)
T 3vgz_A          113 VTAIDAK-TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLA  191 (353)
T ss_dssp             EEEEETT-TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCE
T ss_pred             EEEEeCC-CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEE
Confidence            2222210 000001111111         1268899999999777766  478899999999988888875556678899


Q ss_pred             EcCCCCEEEEeeCCCeEEEEeCC---------------------------CCeEEEee-CCCcEEEEeCC
Q psy16881        168 FSCDDSLLASGSNDKTVTIWDML---------------------------ATLLASGS-NDKTVTIWDMR  209 (222)
Q Consensus       168 ~s~~~~~l~s~s~D~~i~lwd~~---------------------------~~~l~s~~-~d~~i~iwd~~  209 (222)
                      |+|+++.|++++.++.+.+||+.                           ...++.++ .++.|.+||+.
T Consensus       192 ~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  261 (353)
T 3vgz_A          192 LDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR  261 (353)
T ss_dssp             EETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            99999999999999999999973                           12344444 45899999997

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.43  E-value=3.4e-11  Score=96.63  Aligned_cols=174  Identities=10%  Similarity=0.133  Sum_probs=106.8

Q ss_pred             eEE-EEEcCCCCeEEEecCCC---eEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee-ee-eEeee
Q psy16881         30 MRC-VRFSPDTRLLATGGDDE---TVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV-KQ-IIPTR  103 (222)
Q Consensus        30 v~~-l~~spdg~~l~tgs~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~  103 (222)
                      ... ++|+|+|++|+++..++   +|++||+.+++......... ..   .   .+.+.+........... .. +..++
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~---~---~~~~spdg~~l~~~~~~~~~~i~~~~  157 (331)
T 3u4y_A           85 SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DA---V---GIAISPNGNGLILIDRSSANTVRRFK  157 (331)
T ss_dssp             CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TE---E---EEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred             CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-Cc---c---ceEECCCCCEEEEEecCCCceEEEEE
Confidence            344 89999999998665553   99999999887665543211 11   0   01122222221111111 12 22222


Q ss_pred             eee----eccCCccccccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCce---EEEeccCCccEEEEEEcCCCCEE
Q psy16881        104 VGV----YGQDSETVGRHTSAVTSVRFNHKSSLLV-SGSVDKTVKLWDVPSLTC---IKTLESHTRYVTCCTFSCDDSLL  175 (222)
Q Consensus       104 ~~~----~~~~~~~~~~h~~~i~~l~~~~~~~~l~-sg~~dg~I~iwd~~~~~~---~~~~~~~~~~V~~~~~s~~~~~l  175 (222)
                      ...    .......+ ........++|+|++++++ ++..++.|++||+.+++.   +..+..+ ..+..++|+|+|++|
T Consensus       158 ~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l  235 (331)
T 3u4y_A          158 IDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTV  235 (331)
T ss_dssp             ECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEE
T ss_pred             ECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEE
Confidence            110    00001111 2344578999999999654 445688999999998887   7776654 556789999999977


Q ss_pred             EEee-CCCeEEEEeCC--------------------------------CCeEE-EeeCCCcEEEEeCCCCc
Q psy16881        176 ASGS-NDKTVTIWDML--------------------------------ATLLA-SGSNDKTVTIWDMRGNL  212 (222)
Q Consensus       176 ~s~s-~D~~i~lwd~~--------------------------------~~~l~-s~~~d~~i~iwd~~~~~  212 (222)
                      +.+. .++.|.+||+.                                ...|+ ++..++.|.+||+....
T Consensus       236 ~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          236 YVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             EEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             EEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            6554 57789999963                                12344 44456799999998554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.42  E-value=1.4e-11  Score=98.50  Aligned_cols=172  Identities=9%  Similarity=-0.015  Sum_probs=102.2

Q ss_pred             ceEEEEEcCCCCeEEEec------------CCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee
Q psy16881         29 NMRCVRFSPDTRLLATGG------------DDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV   96 (222)
Q Consensus        29 ~v~~l~~spdg~~l~tgs------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (222)
                      .+..++|+|+|++|++++            .++.|.+||+.+.+........ ..   ...   +.+.+........  .
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~---~~~---~~~s~dg~~l~~~--~  153 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQ---ITM---LAWARDGSKLYGL--G  153 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SS---CCC---EEECTTSSCEEEE--S
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-CC---cce---eEECCCCCEEEEe--C
Confidence            567799999999998886            5799999999887665544211 11   000   1111222211111  1


Q ss_pred             eeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCC-C-----------------------cEEEEeCCCCce
Q psy16881         97 KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVD-K-----------------------TVKLWDVPSLTC  152 (222)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~d-g-----------------------~I~iwd~~~~~~  152 (222)
                      ..+..++.. .......+.. ......+.|+|+++.++..+.. +                       .|.+||+.+++.
T Consensus       154 ~~i~~~d~~-~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  231 (337)
T 1pby_B          154 RDLHVMDPE-AGTLVEDKPI-QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM  231 (337)
T ss_dssp             SSEEEEETT-TTEEEEEECS-TTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred             CeEEEEECC-CCcEeeeeec-cccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence            122222210 0000011111 1112334667777655444332 2                       468999988766


Q ss_pred             E-EEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        153 I-KTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML----------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       153 ~-~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      . ..+..+...+..++|+|++++++++  ++.|.+||+.                      ...+++++.++.|++||++
T Consensus       232 ~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~  309 (337)
T 1pby_B          232 AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred             eEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence            4 2344556678899999999999988  7899999974                      3457777889999999997


Q ss_pred             -CCcc
Q psy16881        210 -GNLS  213 (222)
Q Consensus       210 -~~~~  213 (222)
                       ++..
T Consensus       310 ~~~~~  314 (337)
T 1pby_B          310 TLEKK  314 (337)
T ss_dssp             TCCEE
T ss_pred             CCcEE
Confidence             4443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.42  E-value=4.2e-11  Score=96.02  Aligned_cols=175  Identities=13%  Similarity=0.215  Sum_probs=100.5

Q ss_pred             cceEEEEEcCCCCeEEEec-CCCeEEEEeCCCC---ceEEeeccCCCcceeeccceecCccCCcccceeee-eeeeeEee
Q psy16881         28 SNMRCVRFSPDTRLLATGG-DDETVTVWRSDDL---SLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFST-FVKQIIPT  102 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs-~Dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  102 (222)
                      ..+..++|+|+|++|++++ .+++|.+|++.++   .........  ..  ...   +.+.+......... ....+..+
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~--~~~---~~~s~dg~~l~~~~~~~~~v~~~  156 (343)
T 1ri6_A           84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL--DG--CHS---ANISPDNRTLWVPALKQDRICLF  156 (343)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC--TT--BCC---CEECTTSSEEEEEEGGGTEEEEE
T ss_pred             CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC--CC--ceE---EEECCCCCEEEEecCCCCEEEEE
Confidence            4688899999999876655 4899999998422   222222111  00  110   11122222122222 12233333


Q ss_pred             eeeeeccCC--c--ccc-ccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCC--Cce--EEEec---cC---CccEEEE
Q psy16881        103 RVGVYGQDS--E--TVG-RHTSAVTSVRFNHKSSLLVSG-SVDKTVKLWDVPS--LTC--IKTLE---SH---TRYVTCC  166 (222)
Q Consensus       103 ~~~~~~~~~--~--~~~-~h~~~i~~l~~~~~~~~l~sg-~~dg~I~iwd~~~--~~~--~~~~~---~~---~~~V~~~  166 (222)
                      +....+...  .  .+. .....+..++|+|++++++.+ ..++.|++||+..  ++.  ...+.   ..   ...+..+
T Consensus       157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  236 (343)
T 1ri6_A          157 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI  236 (343)
T ss_dssp             EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred             EecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence            321100000  0  111 123467889999999976555 4789999999953  332  22222   11   2356789


Q ss_pred             EEcCCCCEEE-EeeCCCeEEEEeCC--------------------------CCeEEEee-CCCcEEEEeCC
Q psy16881        167 TFSCDDSLLA-SGSNDKTVTIWDML--------------------------ATLLASGS-NDKTVTIWDMR  209 (222)
Q Consensus       167 ~~s~~~~~l~-s~s~D~~i~lwd~~--------------------------~~~l~s~~-~d~~i~iwd~~  209 (222)
                      +|+|++++|+ +...++.|.+||+.                          ...+++++ .++.|.+|++.
T Consensus       237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          237 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             EECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            9999998877 45578999999974                          23456555 68999999543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.40  E-value=7.9e-12  Score=115.63  Aligned_cols=173  Identities=13%  Similarity=-0.009  Sum_probs=116.7

Q ss_pred             ccceEEEEEc-CCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeE-eeee
Q psy16881         27 GSNMRCVRFS-PDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQII-PTRV  104 (222)
Q Consensus        27 ~~~v~~l~~s-pdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  104 (222)
                      ...+..++|| |||++|++++ ++.|.+|+..++......   .+....+..   ..+. ......+......+. .++.
T Consensus       295 ~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~---~~~~~~~~~---~~~s-dg~~l~~~s~~~~l~~~~d~  366 (1045)
T 1k32_A          295 IPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVP---EPLRIRYVR---RGGD-TKVAFIHGTREGDFLGIYDY  366 (1045)
T ss_dssp             CGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECS---CCSCEEEEE---ECSS-SEEEEEEEETTEEEEEEEET
T ss_pred             ccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEcc---CCCcceEEe---eeEc-CCCeEEEEECCCceEEEEEC
Confidence            3468899999 9999999887 889999998876543311   111101110   1122 222222222211222 1111


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCC--
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDK--  182 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~--  182 (222)
                        .......+.+|...+..++|+|+|+++++++.++.|++||+.+++......+|...+.+++|||+|++|++++.++  
T Consensus       367 --~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~  444 (1045)
T 1k32_A          367 --RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG  444 (1045)
T ss_dssp             --TTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSS
T ss_pred             --CCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccc
Confidence              1111122335778899999999999999999999999999999888777768888899999999999999887654  


Q ss_pred             --------eEEEEeCC----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        183 --------TVTIWDML----------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       183 --------~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                              .|.+||+.                      +..|++++.++..++|+..
T Consensus       445 ~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~  501 (1045)
T 1k32_A          445 ETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  501 (1045)
T ss_dssp             TTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             cccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence                    89999974                      2457777777777777654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.40  E-value=7.8e-11  Score=94.76  Aligned_cols=173  Identities=11%  Similarity=0.010  Sum_probs=105.1

Q ss_pred             ceEEEEEcCCCCeE-EEecCCCeEEEEeCCCCceEEeeccCCCc---ceeeccceecCccCCcccceeeeee--------
Q psy16881         29 NMRCVRFSPDTRLL-ATGGDDETVTVWRSDDLSLIMETNDRGHT---QGRIEGWGRVPACPLCRTRVFSTFV--------   96 (222)
Q Consensus        29 ~v~~l~~spdg~~l-~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--------   96 (222)
                      .+..++|+|+|+++ +++..+++|.+||+.+++...........   ......   +.+.+..+........        
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~---~~~spdg~~l~~~~~~~~~~~~~~  120 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYS---FAISPDGKEVYATVNPTQRLNDHY  120 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSC---EEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccc---eEECCCCCEEEEEccccccccccc
Confidence            47789999999865 56667899999999887766544211100   000111   1122222222222211        


Q ss_pred             ----eeeEeeeeeee--ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCC----------
Q psy16881         97 ----KQIIPTRVGVY--GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT----------  160 (222)
Q Consensus        97 ----~~~~~~~~~~~--~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~----------  160 (222)
                          ..+..++....  ....... .+...+.+++|+|+++ ++.++.  .|.+||..+++.+..+..+.          
T Consensus       121 ~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  196 (349)
T 1jmx_B          121 VVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPD  196 (349)
T ss_dssp             EECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCB
T ss_pred             ccCCCeEEEEECCCccccceeeec-cCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCcc
Confidence                22333322110  0011111 2344578899999999 665543  49999999887766654331          


Q ss_pred             ----------------------------------------------------------ccEEEEEEcC-CCCEEEEeeCC
Q psy16881        161 ----------------------------------------------------------RYVTCCTFSC-DDSLLASGSND  181 (222)
Q Consensus       161 ----------------------------------------------------------~~V~~~~~s~-~~~~l~s~s~D  181 (222)
                                                                                ..+..++|+| ++++++++  +
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~  274 (349)
T 1jmx_B          197 VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--L  274 (349)
T ss_dssp             CCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--E
T ss_pred             ceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--c
Confidence                                                                      1345677889 99999888  8


Q ss_pred             CeEEEEeCC----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        182 KTVTIWDML----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       182 ~~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +.|.+||+.                      ...|++++.++.|++||+++
T Consensus       275 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          275 NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  325 (349)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             CeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence            899999973                      24566677889999999974

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.39  E-value=1.8e-11  Score=105.93  Aligned_cols=126  Identities=12%  Similarity=0.106  Sum_probs=100.8

Q ss_pred             EEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCCcc
Q psy16881         34 RFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSET  113 (222)
Q Consensus        34 ~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (222)
                      .|+|+++++++++.|++|.+||..+++++..+.                                               
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~-----------------------------------------------  176 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID-----------------------------------------------  176 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEE-----------------------------------------------
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEe-----------------------------------------------
Confidence            488999999999999999999987665443220                                               


Q ss_pred             ccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC--CCCceEEEeccCCccEEEEEEcC----CCCEEEEee-CCCeEEE
Q psy16881        114 VGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV--PSLTCIKTLESHTRYVTCCTFSC----DDSLLASGS-NDKTVTI  186 (222)
Q Consensus       114 ~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~--~~~~~~~~~~~~~~~V~~~~~s~----~~~~l~s~s-~D~~i~l  186 (222)
                       .++.  +..++|+|+++++++++.|+.|++||+  .+++++.++.. ...+..++|+|    +|++|++++ .+++|.+
T Consensus       177 -~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v  252 (543)
T 1nir_A          177 -TGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAI  252 (543)
T ss_dssp             -CSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEE
T ss_pred             -cCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEE
Confidence             0122  678999999999999999999999999  78888888875 44679999999    999999988 5899999


Q ss_pred             EeCCC-----------------------------------CeEEEeeCCCcEEEEeCCC
Q psy16881        187 WDMLA-----------------------------------TLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       187 wd~~~-----------------------------------~~l~s~~~d~~i~iwd~~~  210 (222)
                      ||..+                                   .++++...+++|.+||+..
T Consensus       253 ~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~  311 (543)
T 1nir_A          253 MDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD  311 (543)
T ss_dssp             EETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred             EeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence            98631                                   1344555678999999863

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.37  E-value=7.1e-11  Score=94.72  Aligned_cols=135  Identities=9%  Similarity=0.039  Sum_probs=95.0

Q ss_pred             ccceEEEEEcCCCCeEEEecC-CCeEEEEeCCCCce-EEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGD-DETVTVWRSDDLSL-IMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~-Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      ...+ .++|+|+|++|++++. +++|.+||..++.. ....                                       
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~---------------------------------------   79 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI---------------------------------------   79 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE---------------------------------------
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec---------------------------------------
Confidence            3445 8999999997665555 89999999875443 1110                                       


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE-eeC
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDK---TVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS-GSN  180 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg---~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s-~s~  180 (222)
                                ..+..+..+++|+|++++++++..++   .|.+||+.+++.+..+..+. .+.+++|+|+|++|++ ...
T Consensus        80 ----------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~  148 (331)
T 3u4y_A           80 ----------QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRS  148 (331)
T ss_dssp             ----------EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEET
T ss_pred             ----------ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecC
Confidence                      01223333488999999988655553   89999999998887776544 4689999999985554 455


Q ss_pred             CCe-EEEEeCC---------------------------CC-eEEEeeCCCcEEEEeCC-CCc
Q psy16881        181 DKT-VTIWDML---------------------------AT-LLASGSNDKTVTIWDMR-GNL  212 (222)
Q Consensus       181 D~~-i~lwd~~---------------------------~~-~l~s~~~d~~i~iwd~~-~~~  212 (222)
                      ++. +.+|++.                           +. +++++..++.|++||++ ++.
T Consensus       149 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          149 SANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN  210 (331)
T ss_dssp             TTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred             CCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence            577 9988852                           23 34555568899999997 444

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.36  E-value=2.5e-11  Score=105.24  Aligned_cols=170  Identities=10%  Similarity=-0.004  Sum_probs=102.1

Q ss_pred             ccceEEEEEcCCCCeEEEecC-CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee----eeeEe
Q psy16881         27 GSNMRCVRFSPDTRLLATGGD-DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV----KQIIP  101 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  101 (222)
                      ...|.+++|+|||++||.++. ||+++||+++++.......   +....+..   ..++++  ...+....    .....
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~---~~~~~~~~---~~~spd--~~l~~~~~~~g~~~~~l   92 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLD---PHYGVG--RVILVRDVSKGAEQHAL   92 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS---SCCSEECE---ECTTCS--EEEEEEECSTTSCCEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec---cccccccc---ccCCCC--eEEEEeccCCCCcceEE
Confidence            456899999999999998887 9999999986655433221   11001111   112222  12222211    11112


Q ss_pred             eeeee--eccCCccccccCCCEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881        102 TRVGV--YGQDSETVGRHTSAVTSVRFNHKSS--LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       102 ~~~~~--~~~~~~~~~~h~~~i~~l~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s  177 (222)
                      +....  .+... .+.. ...+...+|+++++  .+++++.+ .+.+||+.+++.......+.   .+++|||+|+.|++
T Consensus        93 ~~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~  166 (582)
T 3o4h_A           93 FKVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLPG---FGFVSDIRGDLIAG  166 (582)
T ss_dssp             EEEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEE
T ss_pred             EEEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCCC---ceEEECCCCCEEEE
Confidence            21111  11111 1111 12234567777775  45555544 45599998876544433332   68899999999998


Q ss_pred             eeCC----CeEEEEeCC----------------------CCeEEEeeCCC--cEEEEeCCC
Q psy16881        178 GSND----KTVTIWDML----------------------ATLLASGSNDK--TVTIWDMRG  210 (222)
Q Consensus       178 ~s~D----~~i~lwd~~----------------------~~~l~s~~~d~--~i~iwd~~~  210 (222)
                      ++.+    +.|.+||+.                      +..|++++.++  .|++||+.+
T Consensus       167 ~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~  227 (582)
T 3o4h_A          167 LGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD  227 (582)
T ss_dssp             EEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT
T ss_pred             EEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC
Confidence            8877    789999973                      35678777888  899999974

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.35  E-value=4.5e-11  Score=93.44  Aligned_cols=157  Identities=10%  Similarity=-0.016  Sum_probs=98.5

Q ss_pred             ccceEEEEEcCCCCeEEEec--CCCeEEEEeC--CCCceEEeeccCCCcceeeccceecCccCCcccceeeee-eeeeEe
Q psy16881         27 GSNMRCVRFSPDTRLLATGG--DDETVTVWRS--DDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF-VKQIIP  101 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs--~Dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  101 (222)
                      ...+.+++|+|+|++|++++  .++..+||.+  .+.... .....  ..  ...   ..+.+.....++... ......
T Consensus        84 ~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~--~~--~~~---~~~spdg~~l~~~~~~~~~~~l  155 (297)
T 2ojh_A           84 TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR-LMTKN--LP--SYW---HGWSPDGKSFTYCGIRDQVFDI  155 (297)
T ss_dssp             CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE-ECCSS--SS--EEE---EEECTTSSEEEEEEEETTEEEE
T ss_pred             cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE-EeecC--CC--ccc---eEECCCCCEEEEEECCCCceEE
Confidence            36678899999999999988  3345555544  443322 11111  11  110   112222222222221 122223


Q ss_pred             eeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCC-CCceEEEeccCCccEEEEEEcCCCCEEEEee
Q psy16881        102 TRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS-VDKTVKLWDVP-SLTCIKTLESHTRYVTCCTFSCDDSLLASGS  179 (222)
Q Consensus       102 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~-~dg~I~iwd~~-~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s  179 (222)
                      +...........+..|...+.++.|+|+++.++.++ .++.++||++. +...+..+..|...+.++.|+|++++|++++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  235 (297)
T 2ojh_A          156 YSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVS  235 (297)
T ss_dssp             EEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEE
T ss_pred             EEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEE
Confidence            322211222233445678899999999999777665 58999999886 5566777888888899999999999999887


Q ss_pred             CC-----------CeEEEEeCCC
Q psy16881        180 ND-----------KTVTIWDMLA  191 (222)
Q Consensus       180 ~D-----------~~i~lwd~~~  191 (222)
                      .+           +.|.+||+.+
T Consensus       236 ~~~~~~~~~~~~~~~l~~~d~~~  258 (297)
T 2ojh_A          236 YDADVFDHPRDLDVRVQLMDMDG  258 (297)
T ss_dssp             EETTCCSCCSSEEEEEEEEETTS
T ss_pred             cCCCCCcccccCceEEEEEecCC
Confidence            66           5699999864

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.34  E-value=1.4e-10  Score=102.83  Aligned_cols=155  Identities=10%  Similarity=0.016  Sum_probs=94.9

Q ss_pred             ceEEEEEcCCCCeEEEecCC---------CeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeee
Q psy16881         29 NMRCVRFSPDTRLLATGGDD---------ETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQI   99 (222)
Q Consensus        29 ~v~~l~~spdg~~l~tgs~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (222)
                      .|..++|||||++|++++.+         +.|++||+.++....-.....+.. .+.   ...++++....++... ..+
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~-~~~---~~~~SPdG~~la~~~~-~~i  136 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA-KLQ---YAGWGPKGQQLIFIFE-NNI  136 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC-CCS---BCCBCSSTTCEEEEET-TEE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccc-ccc---ccEECCCCCEEEEEEC-CeE
Confidence            38899999999999998775         788899998776522111111110 011   1223344433333322 223


Q ss_pred             EeeeeeeeccCCccccccCC------------------CEEEEEEcCCCCEEEEEeCCC---------------------
Q psy16881        100 IPTRVGVYGQDSETVGRHTS------------------AVTSVRFNHKSSLLVSGSVDK---------------------  140 (222)
Q Consensus       100 ~~~~~~~~~~~~~~~~~h~~------------------~i~~l~~~~~~~~l~sg~~dg---------------------  140 (222)
                      ..++... +........+..                  .+..++|+|+|+.|++++.|+                     
T Consensus       137 ~~~~~~~-g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (723)
T 1xfd_A          137 YYCAHVG-KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKP  215 (723)
T ss_dssp             EEESSSS-SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEE
T ss_pred             EEEECCC-CceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCccee
Confidence            3322110 000011111111                  237899999999999887653                     


Q ss_pred             -------------cEEEEeCCCCceEEEeccC------CccEEEEEEcCCCCEEEEeeC----CCeEEEEeC
Q psy16881        141 -------------TVKLWDVPSLTCIKTLESH------TRYVTCCTFSCDDSLLASGSN----DKTVTIWDM  189 (222)
Q Consensus       141 -------------~I~iwd~~~~~~~~~~~~~------~~~V~~~~~s~~~~~l~s~s~----D~~i~lwd~  189 (222)
                                   .|++||+.+++....+..+      ...+..++|||+|++|++.+.    +..|.+||+
T Consensus       216 ~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~  287 (723)
T 1xfd_A          216 YHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA  287 (723)
T ss_dssp             EECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET
T ss_pred             ccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC
Confidence                         7999999888765566554      567899999999998877653    357888986

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.34  E-value=4.7e-10  Score=90.72  Aligned_cols=182  Identities=12%  Similarity=0.091  Sum_probs=102.0

Q ss_pred             eccceEEEEEcCCCCeEEEec-CCCeEEEEeCCC-Cc--eEEeeccCCCcce---eeccceecCccCCcccceeee-eee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGG-DDETVTVWRSDD-LS--LIMETNDRGHTQG---RIEGWGRVPACPLCRTRVFST-FVK   97 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs-~Dg~i~iwd~~~-~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~   97 (222)
                      +...+..++|+|||++|++++ .+++|++|++.. +.  .+......+..+.   .......+.+.+... ..... ...
T Consensus        84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~  162 (347)
T 3hfq_A           84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSD  162 (347)
T ss_dssp             ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTT
T ss_pred             CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCC
Confidence            456788899999999888877 789999999862 22  2222211111100   000000011222222 11111 112


Q ss_pred             eeEeeeeeeeccC--Cccccc-cCCCEEEEEEcCCCCEEEE-EeCCCcEEEEeCCC--Cce--EEEeccCC------ccE
Q psy16881         98 QIIPTRVGVYGQD--SETVGR-HTSAVTSVRFNHKSSLLVS-GSVDKTVKLWDVPS--LTC--IKTLESHT------RYV  163 (222)
Q Consensus        98 ~~~~~~~~~~~~~--~~~~~~-h~~~i~~l~~~~~~~~l~s-g~~dg~I~iwd~~~--~~~--~~~~~~~~------~~V  163 (222)
                      .+..++....+..  ...+.. ....+..++|+|+|++++. ...++.|++|++..  ++.  +..+....      ..+
T Consensus       163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  242 (347)
T 3hfq_A          163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGA  242 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEE
T ss_pred             EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcc
Confidence            2333332100000  000011 1235678999999996555 56688999999863  433  22332222      458


Q ss_pred             EEEEEcCCCCEEE-EeeCCCeEEEEeCC--------------------------CCeEEEeeC-CCcEEEEeC
Q psy16881        164 TCCTFSCDDSLLA-SGSNDKTVTIWDML--------------------------ATLLASGSN-DKTVTIWDM  208 (222)
Q Consensus       164 ~~~~~s~~~~~l~-s~s~D~~i~lwd~~--------------------------~~~l~s~~~-d~~i~iwd~  208 (222)
                      ..++|+|+|++|+ +...++.|.+|++.                          +.+|++++. ++.|.+|++
T Consensus       243 ~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          243 AAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             EEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             eeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence            8999999999875 55668999999963                          245666665 589999954

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.32  E-value=5.6e-10  Score=90.82  Aligned_cols=176  Identities=12%  Similarity=0.098  Sum_probs=101.2

Q ss_pred             eccceEEEEEcCCCCeEEEecCC----CeEEEEeCCC--CceE--EeeccCCCcceeeccceecCccCCcccceeeee-e
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDD----ETVTVWRSDD--LSLI--METNDRGHTQGRIEGWGRVPACPLCRTRVFSTF-V   96 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~D----g~i~iwd~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   96 (222)
                      +...++.++|+|||++|++++.+    +.|.+|+++.  +...  ......+..+..+.      .  .......+.. .
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~------~--dg~~l~~~~~~~  119 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLT------T--NGKNIVTANYSG  119 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEE------E--CSSEEEEEETTT
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEE------E--CCCEEEEEECCC
Confidence            45677889999999999988886    8999998765  3322  11111111111000      0  1111111111 1


Q ss_pred             eeeEeeeeeeeccC-------------CccccccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCc-------eE--
Q psy16881         97 KQIIPTRVGVYGQD-------------SETVGRHTSAVTSVRFNHKSSLLVSGS-VDKTVKLWDVPSLT-------CI--  153 (222)
Q Consensus        97 ~~~~~~~~~~~~~~-------------~~~~~~h~~~i~~l~~~~~~~~l~sg~-~dg~I~iwd~~~~~-------~~--  153 (222)
                      ..+..++.......             ......+...+.+++|+|+|++++.++ .++.|++|++....       ..  
T Consensus       120 ~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~  199 (361)
T 3scy_A          120 GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK  199 (361)
T ss_dssp             TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE
T ss_pred             CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec
Confidence            12222221100000             000111234468899999999665555 48899999876432       11  


Q ss_pred             ----EEeccCCccEEEEEEcCCCCEEEEee-CCCeEEEEeCC----------------------------CCeEEEeeC-
Q psy16881        154 ----KTLESHTRYVTCCTFSCDDSLLASGS-NDKTVTIWDML----------------------------ATLLASGSN-  199 (222)
Q Consensus       154 ----~~~~~~~~~V~~~~~s~~~~~l~s~s-~D~~i~lwd~~----------------------------~~~l~s~~~-  199 (222)
                          .....+...+..++|+|+|+++++++ .++.|.+||+.                            +.+|+++.. 
T Consensus       200 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~  279 (361)
T 3scy_A          200 GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL  279 (361)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred             ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence                11223344578999999999888777 68999999962                            234655554 


Q ss_pred             -CCcEEEEeCC
Q psy16881        200 -DKTVTIWDMR  209 (222)
Q Consensus       200 -d~~i~iwd~~  209 (222)
                       ++.|.+|++.
T Consensus       280 ~~~~i~v~~~~  290 (361)
T 3scy_A          280 KADGVAIFKVD  290 (361)
T ss_dssp             SSCEEEEEEEC
T ss_pred             CCCEEEEEEEc
Confidence             5889999985

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.31  E-value=7.5e-11  Score=95.46  Aligned_cols=135  Identities=13%  Similarity=0.154  Sum_probs=92.4

Q ss_pred             ccceEEEEEcCCCCeEEEecC---CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGD---DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      ...+..++|+|||+ |++++.   ++.|++|++.++......                                      
T Consensus        39 ~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~--------------------------------------   79 (347)
T 3hfq_A           39 TQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN--------------------------------------   79 (347)
T ss_dssp             CSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEE--------------------------------------
T ss_pred             cCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEee--------------------------------------
Confidence            46678899999999 554444   689999998543321100                                      


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCC-CC--ceEEEecc---------CCccEEEEEEcC
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS-VDKTVKLWDVP-SL--TCIKTLES---------HTRYVTCCTFSC  170 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~-~dg~I~iwd~~-~~--~~~~~~~~---------~~~~V~~~~~s~  170 (222)
                               .+..+...+..++|+|+++++++++ .++.|++||+. ++  +.+..+..         +...+.+++|+|
T Consensus        80 ---------~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp  150 (347)
T 3hfq_A           80 ---------TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP  150 (347)
T ss_dssp             ---------EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT
T ss_pred             ---------eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC
Confidence                     0011344566789999999888887 67899999996 22  23333322         122488999999


Q ss_pred             CCCEEEEeeCCCeEEEEeCC---------------------------CCeEE-EeeCCCcEEEEeCC
Q psy16881        171 DDSLLASGSNDKTVTIWDML---------------------------ATLLA-SGSNDKTVTIWDMR  209 (222)
Q Consensus       171 ~~~~l~s~s~D~~i~lwd~~---------------------------~~~l~-s~~~d~~i~iwd~~  209 (222)
                      +|+++++...++.|.+||+.                           +.+++ +...++.|++|++.
T Consensus       151 dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~  217 (347)
T 3hfq_A          151 DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYD  217 (347)
T ss_dssp             TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            99977777778899999974                           12344 44567889999876

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.30  E-value=1.3e-10  Score=92.94  Aligned_cols=160  Identities=11%  Similarity=0.008  Sum_probs=97.1

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCC-cceeecccee-cCccCCcccc---eeeee------
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGH-TQGRIEGWGR-VPACPLCRTR---VFSTF------   95 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~---~~~~~------   95 (222)
                      +..+..++|+|+|++|+++  ++.|.+||+.++........... ....+..-+. +.........   .+...      
T Consensus       134 ~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~  211 (337)
T 1pby_B          134 PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDP  211 (337)
T ss_dssp             CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCT
T ss_pred             CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccc
Confidence            4457788999999988887  68999999998876654432110 1000000000 0000000000   00000      


Q ss_pred             ------eeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEc
Q psy16881         96 ------VKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS  169 (222)
Q Consensus        96 ------~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s  169 (222)
                            ...+..++..........+..+...+..++|+|++++++++  ++.|.+||+.+++.+..+..+ ..+.+++|+
T Consensus       212 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s  288 (337)
T 1pby_B          212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVS  288 (337)
T ss_dssp             TSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEEC
T ss_pred             ccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEEC
Confidence                  00111111100000001123355667889999999998888  699999999998887777644 457889999


Q ss_pred             CCCCEEEEeeCCCeEEEEeCCC
Q psy16881        170 CDDSLLASGSNDKTVTIWDMLA  191 (222)
Q Consensus       170 ~~~~~l~s~s~D~~i~lwd~~~  191 (222)
                      |++++|++++.++.|.+||+.+
T Consensus       289 ~dg~~l~~~~~~~~i~v~d~~~  310 (337)
T 1pby_B          289 TDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             TTSCEEEEESBSSEEEEEETTT
T ss_pred             CCCCEEEEEcCCCcEEEEECcC
Confidence            9999999999999999999864

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.29  E-value=4.3e-10  Score=91.55  Aligned_cols=91  Identities=15%  Similarity=0.166  Sum_probs=66.6

Q ss_pred             CCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCce--EEEec---cCCccEEEEEEcCCCCEEEEeeC--CCeEEEEeCC
Q psy16881        119 SAVTSVRFNHKSSLLVSGS-VDKTVKLWDVPSLTC--IKTLE---SHTRYVTCCTFSCDDSLLASGSN--DKTVTIWDML  190 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~sg~-~dg~I~iwd~~~~~~--~~~~~---~~~~~V~~~~~s~~~~~l~s~s~--D~~i~lwd~~  190 (222)
                      ..+..++|+|+|++++.++ .++.|.+||+.+++.  +..+.   .+...+..++|+|+|++|+++..  ++.|.+|++.
T Consensus       211 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          211 SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            3467899999999877776 689999999986644  23332   23345689999999999877665  4899999873


Q ss_pred             --------------------------CCeEEEee-CCCcEEEEeCC
Q psy16881        191 --------------------------ATLLASGS-NDKTVTIWDMR  209 (222)
Q Consensus       191 --------------------------~~~l~s~~-~d~~i~iwd~~  209 (222)
                                                +.+|++++ .++.|.+|++.
T Consensus       291 ~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          291 ETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             TTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence                                      23566666 67889996543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.29  E-value=6.3e-11  Score=104.84  Aligned_cols=74  Identities=14%  Similarity=0.211  Sum_probs=57.1

Q ss_pred             ccCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceEEEec--cCCc---cEEEEEEcC--CCCEEEEeeCCCe
Q psy16881        116 RHTSAVTSVRFNHKSSLLVSGSVDK-----TVKLWDVPSLTCIKTLE--SHTR---YVTCCTFSC--DDSLLASGSNDKT  183 (222)
Q Consensus       116 ~h~~~i~~l~~~~~~~~l~sg~~dg-----~I~iwd~~~~~~~~~~~--~~~~---~V~~~~~s~--~~~~l~s~s~D~~  183 (222)
                      .|...+..++|+|+|+.+++++.++     .|.+||+.+++....+.  .+..   .+..+.|+|  +|+++++++.|+.
T Consensus       255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~  334 (706)
T 2z3z_A          255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW  334 (706)
T ss_dssp             CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred             CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence            3566789999999999999887776     89999999884333322  2222   235689999  9999999999998


Q ss_pred             EEEEeC
Q psy16881        184 VTIWDM  189 (222)
Q Consensus       184 i~lwd~  189 (222)
                      +++|.+
T Consensus       335 ~~l~~~  340 (706)
T 2z3z_A          335 NHLYLY  340 (706)
T ss_dssp             CEEEEE
T ss_pred             cEEEEE
Confidence            889865

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.29  E-value=1.2e-11  Score=109.48  Aligned_cols=149  Identities=13%  Similarity=0.096  Sum_probs=90.8

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee---------ee
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV---------KQ   98 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~   98 (222)
                      ..+..++|+|||+++++ +.||+|++||+.+++..............+.   ...++++....++....         ..
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~---~~~~SpDg~~l~~~~~~~~~~~~~~~~~   92 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAI---RYEISPDREYALFSYNVEPIYQHSYTGY   92 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCS---EEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccc---eEEECCCCCEEEEEecCccceeecceee
Confidence            34667899999998876 7899999999988766544421110000011   12233333333333221         12


Q ss_pred             eEeeeeeeec-cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccE--------------
Q psy16881         99 IIPTRVGVYG-QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV--------------  163 (222)
Q Consensus        99 ~~~~~~~~~~-~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V--------------  163 (222)
                      +..++..... ........|...+..++|+|+|+.++.++. +.|.+||+.+++.......+...+              
T Consensus        93 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~  171 (723)
T 1xfd_A           93 YVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI  171 (723)
T ss_dssp             EEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred             EEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEe
Confidence            2233321100 001112234455788999999999999886 799999998887665554433323              


Q ss_pred             ----EEEEEcCCCCEEEEeeCC
Q psy16881        164 ----TCCTFSCDDSLLASGSND  181 (222)
Q Consensus       164 ----~~~~~s~~~~~l~s~s~D  181 (222)
                          .+++|||+|+.|++++.|
T Consensus       172 ~~~~~~~~~SpDg~~la~~~~~  193 (723)
T 1xfd_A          172 LKTHIAHWWSPDGTRLAYAAIN  193 (723)
T ss_dssp             SSSSEEEEECTTSSEEEEEEEE
T ss_pred             ccCcceEEECCCCCEEEEEEEC
Confidence                789999999999998755

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.28  E-value=2.5e-10  Score=101.03  Aligned_cols=152  Identities=11%  Similarity=0.054  Sum_probs=93.9

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY  107 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (222)
                      ..|.+++|||| +.++.+ .+++|++||+.++..........    .+..   ..++++....++. ....+..++....
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~----~~~~---~~~SpdG~~la~~-~~~~i~v~~~~~~  151 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLFDTNE----ETAS---LDFSPVGDRVAYV-RNHNLYIARGGKL  151 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEECCTT----CCTT---CEECTTSSEEEEE-ETTEEEEEECBCT
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEccCCcc----cccC---CcCCCCCCEEEEE-ECCeEEEEecCcc
Confidence            45899999999 655554 35999999998776543322111    1111   1122333333332 2223333332210


Q ss_pred             ----ccCCccccccCC--------------CEEEEEEcCCCCEEEEEe--------------------------------
Q psy16881        108 ----GQDSETVGRHTS--------------AVTSVRFNHKSSLLVSGS--------------------------------  137 (222)
Q Consensus       108 ----~~~~~~~~~h~~--------------~i~~l~~~~~~~~l~sg~--------------------------------  137 (222)
                          +........+..              .+..++|+|+|++|++++                                
T Consensus       152 ~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~  231 (706)
T 2z3z_A          152 GEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP  231 (706)
T ss_dssp             TSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred             cccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence                111111111222              247899999999999987                                


Q ss_pred             -CCCcEEEEeCCCCceEEEec--cCCccEEEEEEcCCCCEEEEeeCCC-----eEEEEeC
Q psy16881        138 -VDKTVKLWDVPSLTCIKTLE--SHTRYVTCCTFSCDDSLLASGSNDK-----TVTIWDM  189 (222)
Q Consensus       138 -~dg~I~iwd~~~~~~~~~~~--~~~~~V~~~~~s~~~~~l~s~s~D~-----~i~lwd~  189 (222)
                       .+..|.+||+.+++......  .|...+..++|+|+|+.|++++.++     .|.+||+
T Consensus       232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~  291 (706)
T 2z3z_A          232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDA  291 (706)
T ss_dssp             CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEET
T ss_pred             CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEEC
Confidence             44679999999877544332  4667899999999999999988776     8888886

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.27  E-value=7.6e-11  Score=104.80  Aligned_cols=73  Identities=11%  Similarity=0.033  Sum_probs=57.2

Q ss_pred             ccCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCceEEEeccCCc----cEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881        116 RHTSAVTSVRFNHKSSLLVSGSV-----DKTVKLWDVPSLTCIKTLESHTR----YVTCCTFSCDDSLLASGSNDKTVTI  186 (222)
Q Consensus       116 ~h~~~i~~l~~~~~~~~l~sg~~-----dg~I~iwd~~~~~~~~~~~~~~~----~V~~~~~s~~~~~l~s~s~D~~i~l  186 (222)
                      .|...+..++| |+|+.|+.++.     +..|.+||+.++++...+..+..    .+..++|+|+|+++++++.|+.++|
T Consensus       284 ~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l  362 (741)
T 2ecf_A          284 EQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHL  362 (741)
T ss_dssp             CSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEE
T ss_pred             CcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEE
Confidence            36677899999 99998887654     56799999998887666554432    3457899999999999999987777


Q ss_pred             EeC
Q psy16881        187 WDM  189 (222)
Q Consensus       187 wd~  189 (222)
                      |.+
T Consensus       363 ~~~  365 (741)
T 2ecf_A          363 YRI  365 (741)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            754

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.27  E-value=2.2e-11  Score=105.68  Aligned_cols=108  Identities=9%  Similarity=-0.026  Sum_probs=88.0

Q ss_pred             EEEEEcCCCCeEEEecCC----CeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         31 RCVRFSPDTRLLATGGDD----ETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        31 ~~l~~spdg~~l~tgs~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ..++|||||++|++++.|    ++|++||+.++....                                           
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~-------------------------------------------  189 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV-------------------------------------------  189 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE-------------------------------------------
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE-------------------------------------------
Confidence            678899999999988877    788889876543210                                           


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceEEEeccCCccEEEEE--------EcCCCCEEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDK--TVKLWDVPSLTCIKTLESHTRYVTCCT--------FSCDDSLLA  176 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg--~I~iwd~~~~~~~~~~~~~~~~V~~~~--------~s~~~~~l~  176 (222)
                             +..|...+..++|+|+|+.|+++..++  .|.+||+.+++.. .+.+|...+..+.        |+|+|.+++
T Consensus       190 -------l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~  261 (582)
T 3o4h_A          190 -------FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAV  261 (582)
T ss_dssp             -------ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEE
T ss_pred             -------eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEE
Confidence                   113556678899999999999888888  8999999988777 6777777776677        999999999


Q ss_pred             EeeCCCeEEEEeC
Q psy16881        177 SGSNDKTVTIWDM  189 (222)
Q Consensus       177 s~s~D~~i~lwd~  189 (222)
                      +++.|+++++|++
T Consensus       262 ~~~~~g~~~l~~~  274 (582)
T 3o4h_A          262 VARREGRSAVFID  274 (582)
T ss_dssp             EEEETTEEEEEET
T ss_pred             EEEcCCcEEEEEE
Confidence            9999999999997

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.24  E-value=1.4e-10  Score=107.25  Aligned_cols=114  Identities=11%  Similarity=0.060  Sum_probs=93.8

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ...+..++|+|||++|++++.++.|++||+.++......                                         
T Consensus       378 ~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~-----------------------------------------  416 (1045)
T 1k32_A          378 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE-----------------------------------------  416 (1045)
T ss_dssp             CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----------------------------------------
T ss_pred             ccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec-----------------------------------------
Confidence            567899999999999999999999999998765432111                                         


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCC----------cEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDK----------TVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA  176 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg----------~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~  176 (222)
                              .+|...+..++|+|+|+++++++.++          .|++||+.+++ +..+..|...+..+.|+|+|+.|+
T Consensus       417 --------~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~  487 (1045)
T 1k32_A          417 --------RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLY  487 (1045)
T ss_dssp             --------ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEE
T ss_pred             --------cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEE
Confidence                    13566677899999999988887654          89999999876 667778888899999999999999


Q ss_pred             EeeCCCeEEEEeCC
Q psy16881        177 SGSNDKTVTIWDML  190 (222)
Q Consensus       177 s~s~D~~i~lwd~~  190 (222)
                      +++.++...+|+..
T Consensus       488 ~~s~~~~~~~~~~~  501 (1045)
T 1k32_A          488 YLSYRSLDPSPDRV  501 (1045)
T ss_dssp             EEESCCCCCEECSS
T ss_pred             EEecccCCcCcchh
Confidence            99998888888753

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.21  E-value=3.1e-10  Score=91.21  Aligned_cols=110  Identities=6%  Similarity=-0.032  Sum_probs=82.2

Q ss_pred             EEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCCc
Q psy16881         33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSE  112 (222)
Q Consensus        33 l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (222)
                      ++++++++++++++.+++|++||..+++.......                                             
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~---------------------------------------------   39 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM---------------------------------------------   39 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC---------------------------------------------
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec---------------------------------------------
Confidence            46788899999999999999999886654432210                                             


Q ss_pred             cccccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEeccCC------ccEEEEEEcCCCCEEEEeeCC----
Q psy16881        113 TVGRHTSAVTSVRFNHKSSLL-VSGSVDKTVKLWDVPSLTCIKTLESHT------RYVTCCTFSCDDSLLASGSND----  181 (222)
Q Consensus       113 ~~~~h~~~i~~l~~~~~~~~l-~sg~~dg~I~iwd~~~~~~~~~~~~~~------~~V~~~~~s~~~~~l~s~s~D----  181 (222)
                         +....+..++|+|+++++ ++...++.|.+||+.+++.+..+..+.      ..+..++|+|+|++|++++.+    
T Consensus        40 ---~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  116 (349)
T 1jmx_B           40 ---PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL  116 (349)
T ss_dssp             ---SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEEC
T ss_pred             ---CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccc
Confidence               001124568899999855 455678999999999988877665432      236789999999999998865    


Q ss_pred             --------CeEEEEeCC
Q psy16881        182 --------KTVTIWDML  190 (222)
Q Consensus       182 --------~~i~lwd~~  190 (222)
                              +.|.+||+.
T Consensus       117 ~~~~~~~~~~i~~~d~~  133 (349)
T 1jmx_B          117 NDHYVVKPPRLEVFSTA  133 (349)
T ss_dssp             SSCEEECCCEEEEEEGG
T ss_pred             ccccccCCCeEEEEECC
Confidence                    899999973

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.17  E-value=8.5e-09  Score=81.08  Aligned_cols=182  Identities=13%  Similarity=0.217  Sum_probs=108.8

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee--eeeeEeeeee
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF--VKQIIPTRVG  105 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  105 (222)
                      ..+..++++|+|+++++...++.|++|+.. +.....+...+...........+...........+..  ...+..++  
T Consensus        30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d--  106 (286)
T 1q7f_A           30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN--  106 (286)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC--
T ss_pred             CCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC--
Confidence            568889999999998888889999999986 4444433211100000000000111000011111111  11222111  


Q ss_pred             eeccCCcccc-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec--cCCccEEEEEEcCCCCEEEEeeCCC
Q psy16881        106 VYGQDSETVG-RHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE--SHTRYVTCCTFSCDDSLLASGSNDK  182 (222)
Q Consensus       106 ~~~~~~~~~~-~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~--~~~~~V~~~~~s~~~~~l~s~s~D~  182 (222)
                      ..+.....+. .+...+..++++++++++++...++.|.+||.. ++.+..+.  .+...+..++++++|+++++.+.++
T Consensus       107 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~  185 (286)
T 1q7f_A          107 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH  185 (286)
T ss_dssp             TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred             CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCC
Confidence            0000001111 233567899999999988887788999999964 55555553  3445689999999999888888889


Q ss_pred             eEEEEeCC------------------------CCeEEEeeCCC-cEEEEeCCCCcc
Q psy16881        183 TVTIWDML------------------------ATLLASGSNDK-TVTIWDMRGNLS  213 (222)
Q Consensus       183 ~i~lwd~~------------------------~~~l~s~~~d~-~i~iwd~~~~~~  213 (222)
                      .|.+||..                        ..++++...++ .|.+||..++..
T Consensus       186 ~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~  241 (286)
T 1q7f_A          186 CVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLI  241 (286)
T ss_dssp             EEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEE
T ss_pred             EEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEE
Confidence            99999863                        23455555565 899999876543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.16  E-value=1.3e-10  Score=103.00  Aligned_cols=104  Identities=12%  Similarity=0.107  Sum_probs=78.5

Q ss_pred             EEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCC
Q psy16881         32 CVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDS  111 (222)
Q Consensus        32 ~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (222)
                      .++|+|||++++++ .|++|++|++.++.......                                             
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~---------------------------------------------   53 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILS---------------------------------------------   53 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEEC---------------------------------------------
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEc---------------------------------------------
Confidence            56899999766665 69999999987654332110                                             


Q ss_pred             ccccccC---CCEEEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCceE--EEeccCCccEEEEEEcCCCCEEEE
Q psy16881        112 ETVGRHT---SAVTSVRFNHKSSLLVSGSV---------DKTVKLWDVPSLTCI--KTLESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       112 ~~~~~h~---~~i~~l~~~~~~~~l~sg~~---------dg~I~iwd~~~~~~~--~~~~~~~~~V~~~~~s~~~~~l~s  177 (222)
                          .|.   ..+..++|+|+|++|++++.         ++.|++||+.+++.+  ..+   ...+..++|||+|+.|++
T Consensus        54 ----~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~  126 (719)
T 1z68_A           54 ----NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAY  126 (719)
T ss_dssp             ----HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEE
T ss_pred             ----cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEE
Confidence                011   13678999999999998876         789999999988652  122   245788999999999998


Q ss_pred             eeCCCeEEEEeC
Q psy16881        178 GSNDKTVTIWDM  189 (222)
Q Consensus       178 ~s~D~~i~lwd~  189 (222)
                      ++ ++.|++||+
T Consensus       127 ~~-~~~i~~~~~  137 (719)
T 1z68_A          127 VY-QNNIYLKQR  137 (719)
T ss_dssp             EE-TTEEEEESS
T ss_pred             EE-CCeEEEEeC
Confidence            86 779999987

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.15  E-value=1.1e-09  Score=96.17  Aligned_cols=113  Identities=13%  Similarity=0.054  Sum_probs=80.9

Q ss_pred             ccceEEEEEcCCCCeEEEecCC----------CeEEEEeCCC------CceEEeeccCCCcceeeccceecCccCCcccc
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDD----------ETVTVWRSDD------LSLIMETNDRGHTQGRIEGWGRVPACPLCRTR   90 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~D----------g~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (222)
                      ...+..++|||||+.|+.++.|          .+|++|++.+      +....                           
T Consensus       129 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------------------------  181 (662)
T 3azo_A          129 GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE---------------------------  181 (662)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE---------------------------
T ss_pred             CccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE---------------------------
Confidence            4567889999999999988877          5788888764      21100                           


Q ss_pred             eeeeeeeeeEeeeeeeeccCCcccc-ccCCCEEEEEEcCCCCEEEEEeCCC--------cEEEEeCC-CC---ceEEEec
Q psy16881         91 VFSTFVKQIIPTRVGVYGQDSETVG-RHTSAVTSVRFNHKSSLLVSGSVDK--------TVKLWDVP-SL---TCIKTLE  157 (222)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~l~~~~~~~~l~sg~~dg--------~I~iwd~~-~~---~~~~~~~  157 (222)
                                             +. .+...+..++|+|+|++|+.++.++        .|.+||+. ++   +......
T Consensus       182 -----------------------l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~  238 (662)
T 3azo_A          182 -----------------------LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG  238 (662)
T ss_dssp             -----------------------SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred             -----------------------EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence                                   00 1223455678999999988877553        79999998 56   3333344


Q ss_pred             cCCccEEEEEEcCCCCEEEEeeCCC--eEEEEeC
Q psy16881        158 SHTRYVTCCTFSCDDSLLASGSNDK--TVTIWDM  189 (222)
Q Consensus       158 ~~~~~V~~~~~s~~~~~l~s~s~D~--~i~lwd~  189 (222)
                      ++...+..+.|+|+|++++++..++  .|.+||+
T Consensus       239 ~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~  272 (662)
T 3azo_A          239 GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDP  272 (662)
T ss_dssp             ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECT
T ss_pred             CCCceEcceEECCCCeEEEEECCCCCeEEEEEEC
Confidence            5567899999999999888888888  5666664

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.11  E-value=1.5e-09  Score=97.02  Aligned_cols=154  Identities=11%  Similarity=0.074  Sum_probs=94.5

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeec-cceecCccCCcccceeeeeeee---------
Q psy16881         29 NMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIE-GWGRVPACPLCRTRVFSTFVKQ---------   98 (222)
Q Consensus        29 ~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------   98 (222)
                      ....++|+|||++|+++  ||+|++|++.++.....+.  ++...... .+....++++.+..++......         
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLE--NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEEC--TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEe--chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            35578999999999886  8999999999887654332  11111000 0000122344444444333221         


Q ss_pred             eEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE-eccCCccE--------------
Q psy16881         99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKT-LESHTRYV--------------  163 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~-~~~~~~~V--------------  163 (222)
                      +..++.  .......+..|...+...+|+|+|+.|+.+. ++.|.+||+.+++.... ..++...+              
T Consensus        94 ~~~~d~--~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           94 YDIYDL--NKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEEET--TTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             EEEEEC--CCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence            112221  1112223445677899999999999888885 68999999987765432 22322222              


Q ss_pred             ---EEEEEcCCCCEEEEeeCCCe-EEEEeC
Q psy16881        164 ---TCCTFSCDDSLLASGSNDKT-VTIWDM  189 (222)
Q Consensus       164 ---~~~~~s~~~~~l~s~s~D~~-i~lwd~  189 (222)
                         ..+.|||||+.||.++.|.+ +.+|++
T Consensus       171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~  200 (740)
T 4a5s_A          171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (740)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             CCCcceEECCCCCEEEEEEEcccCCceEEE
Confidence               24889999999998876654 888876

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.11  E-value=2.7e-08  Score=78.18  Aligned_cols=133  Identities=14%  Similarity=0.256  Sum_probs=96.3

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY  107 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (222)
                      ..+..++++|+|+++++...++.|.+|+.. +.......                                         
T Consensus       121 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~-----------------------------------------  158 (286)
T 1q7f_A          121 QHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFG-----------------------------------------  158 (286)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE-----------------------------------------
T ss_pred             CCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeC-----------------------------------------
Confidence            457889999999988887788899999854 22111110                                         


Q ss_pred             ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccC--CccEEEEEEcCCCCEEEEeeCCC-eE
Q psy16881        108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESH--TRYVTCCTFSCDDSLLASGSNDK-TV  184 (222)
Q Consensus       108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~--~~~V~~~~~s~~~~~l~s~s~D~-~i  184 (222)
                            ...+...+..++++++++++++...++.|++||.. ++.+..+..+  ...+..++++++|+++++...++ .|
T Consensus       159 ------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i  231 (286)
T 1q7f_A          159 ------CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNL  231 (286)
T ss_dssp             ------CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred             ------CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEE
Confidence                  00123346789999999888887889999999974 5566666443  35688999999999998888775 99


Q ss_pred             EEEeCC------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        185 TIWDML------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       185 ~lwd~~------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      .+||..                        ..++++ +.|+.|++|++..
T Consensus       232 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          232 TIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             EEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             EEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            999863                        123444 6788999998753

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.10  E-value=6.3e-09  Score=85.07  Aligned_cols=156  Identities=8%  Similarity=0.052  Sum_probs=92.2

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCC-CCceEEeeccCCCcceeeccceecCccCCccc-ceeee-----------
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSD-DLSLIMETNDRGHTQGRIEGWGRVPACPLCRT-RVFST-----------   94 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------   94 (222)
                      ..+..++|+|+|++|++++.+ +|.+|++. ++.............  ...   +.+.+.... ..+..           
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~--~~~---~~~spdg~~l~~~~~~~~~~~~~~~~  113 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGH--PRA---NDADTNTRAIFLLAAKQPPYAVYANP  113 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSS--GGG---GCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCC--Ccc---EEECCCCCEEEEEEecCCcceeccce
Confidence            367889999999999998887 99999986 665433211000000  000   122222221 11111           


Q ss_pred             ---eeeeeEeeeeeeeccCCcccc----ccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCC-CCceE--EEec--cCCc
Q psy16881         95 ---FVKQIIPTRVGVYGQDSETVG----RHTSAVTSVRFNHKSSLLVSGSV-DKTVKLWDVP-SLTCI--KTLE--SHTR  161 (222)
Q Consensus        95 ---~~~~~~~~~~~~~~~~~~~~~----~h~~~i~~l~~~~~~~~l~sg~~-dg~I~iwd~~-~~~~~--~~~~--~~~~  161 (222)
                         ....+..+.....+.....+.    .+...+..++|+|+|++++++.. ++.|++||+. +++..  ..+.  .|..
T Consensus       114 ~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~  193 (365)
T 1jof_A          114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD  193 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred             eecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence               111222222111011001111    13567889999999998887654 6799999998 66542  3333  2345


Q ss_pred             cEEEEEEcCCCCEEEEeeC-CCeEEEEeC
Q psy16881        162 YVTCCTFSCDDSLLASGSN-DKTVTIWDM  189 (222)
Q Consensus       162 ~V~~~~~s~~~~~l~s~s~-D~~i~lwd~  189 (222)
                      .+..++|+|+|++|++++. ++.+.+|++
T Consensus       194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~  222 (365)
T 1jof_A          194 HPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCEeEECCCCCEEEEEECCCCeEEEEEE
Confidence            6899999999999988775 678888854

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.07  E-value=3.2e-08  Score=79.83  Aligned_cols=97  Identities=9%  Similarity=0.055  Sum_probs=71.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eEEEe---------ccCCccEEEEEEcC-CCCEEEEee-CCCeEE
Q psy16881        118 TSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT-CIKTL---------ESHTRYVTCCTFSC-DDSLLASGS-NDKTVT  185 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~-~~~~~---------~~~~~~V~~~~~s~-~~~~l~s~s-~D~~i~  185 (222)
                      ......++++++|+++++...++.|++||..... .+..+         .++-..+..++++| ++.++++.+ .++.|+
T Consensus        90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~  169 (329)
T 3fvz_A           90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV  169 (329)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred             cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence            3457889999999988888889999999976432 44444         23444688999999 788888886 688999


Q ss_pred             EEeCC---------------------------------CCeEEEeeCCCcEEEEeCC-CCccc
Q psy16881        186 IWDML---------------------------------ATLLASGSNDKTVTIWDMR-GNLSV  214 (222)
Q Consensus       186 lwd~~---------------------------------~~~l~s~~~d~~i~iwd~~-~~~~~  214 (222)
                      +||..                                 ..++++...++.|++||+. +++..
T Consensus       170 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~  232 (329)
T 3fvz_A          170 QFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR  232 (329)
T ss_dssp             EECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             EEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE
Confidence            99852                                 1234444567789999997 66543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.07  E-value=4.3e-10  Score=99.75  Aligned_cols=151  Identities=11%  Similarity=0.141  Sum_probs=90.3

Q ss_pred             eEEEEEcCCCCeEEEecC---------CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeE
Q psy16881         30 MRCVRFSPDTRLLATGGD---------DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQII  100 (222)
Q Consensus        30 v~~l~~spdg~~l~tgs~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (222)
                      +.+++|||||++|+.++.         |++|++||+++++......-.    ..+..   ..++++....++.. ...+.
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~----~~~~~---~~~SPDG~~la~~~-~~~i~  133 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP----RPIQY---LCWSPVGSKLAYVY-QNNIY  133 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC----SSBCC---EEECSSTTCEEEEE-TTEEE
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC----ccccc---ceECCCCCEEEEEE-CCeEE
Confidence            889999999999998876         799999999887652100000    00111   22333333333332 22333


Q ss_pred             eeeeeee--------ccCCccccccCCC---------EEEEEEcCCCCEEEEEeCCC-----------------------
Q psy16881        101 PTRVGVY--------GQDSETVGRHTSA---------VTSVRFNHKSSLLVSGSVDK-----------------------  140 (222)
Q Consensus       101 ~~~~~~~--------~~~~~~~~~h~~~---------i~~l~~~~~~~~l~sg~~dg-----------------------  140 (222)
                      .++....        +.....+.+|...         ...++|+|+|+.|++++.|.                       
T Consensus       134 ~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  213 (719)
T 1z68_A          134 LKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP  213 (719)
T ss_dssp             EESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred             EEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence            3321100        0000011122111         14799999999999987652                       


Q ss_pred             -----------cEEEEeCCCCceE---E-----EeccCCccEEEEEEcCCCCEEEEeeCC----CeEEEEe
Q psy16881        141 -----------TVKLWDVPSLTCI---K-----TLESHTRYVTCCTFSCDDSLLASGSND----KTVTIWD  188 (222)
Q Consensus       141 -----------~I~iwd~~~~~~~---~-----~~~~~~~~V~~~~~s~~~~~l~s~s~D----~~i~lwd  188 (222)
                                 .|++||+.+++..   .     .+.+|...+..++|||+++++++....    ..|.+||
T Consensus       214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred             CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence                       7889999887642   1     234678889999999998877774432    2488889

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.01  E-value=6.6e-09  Score=84.96  Aligned_cols=128  Identities=13%  Similarity=0.111  Sum_probs=82.8

Q ss_pred             ccceEEEEEcCCCCeEEEecC-CCeEEEEeCC--CCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGD-DETVTVWRSD--DLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~-Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      +..++.++|+|||++|++++. +++|.+|+++  ++.......       .+.   ..+                     
T Consensus       192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~-------~~~---~~~---------------------  240 (365)
T 1jof_A          192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHH-------SFP---LIP---------------------  240 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE-------EEE---SSC---------------------
T ss_pred             CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccc-------eEE---cCC---------------------
Confidence            456899999999999877664 7899999765  222211000       000   000                     


Q ss_pred             eeeeccCCccccccCC------CEEEEE-EcCCCCEEEEEeCC-C-----cEEEEeCC-CCceEE---EeccCCccEEEE
Q psy16881        104 VGVYGQDSETVGRHTS------AVTSVR-FNHKSSLLVSGSVD-K-----TVKLWDVP-SLTCIK---TLESHTRYVTCC  166 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~------~i~~l~-~~~~~~~l~sg~~d-g-----~I~iwd~~-~~~~~~---~~~~~~~~V~~~  166 (222)
                              ..+.+|..      .+..++ |+|+|++++++..+ +     .|++|++. +++...   ....+...+..+
T Consensus       241 --------~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~  312 (365)
T 1jof_A          241 --------PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSN  312 (365)
T ss_dssp             --------TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCC
T ss_pred             --------CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccc
Confidence                    00011222      467899 99999988776543 2     89999986 565432   233344446678


Q ss_pred             EEcC---CCCEEEEeeCC-CeEEEEeCCCCe
Q psy16881        167 TFSC---DDSLLASGSND-KTVTIWDMLATL  193 (222)
Q Consensus       167 ~~s~---~~~~l~s~s~D-~~i~lwd~~~~~  193 (222)
                      +|+|   +|++|++++.+ +.|.+|++....
T Consensus       313 a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~  343 (365)
T 1jof_A          313 AVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             CEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             eecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence            8999   89999988764 899999986543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.96  E-value=8.6e-09  Score=91.41  Aligned_cols=113  Identities=10%  Similarity=0.004  Sum_probs=80.9

Q ss_pred             cceEEEEEcCCCCeEE-----EecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee
Q psy16881         28 SNMRCVRFSPDTRLLA-----TGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT  102 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~-----tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (222)
                      ..+..++|||||++||     .|+.+.+|++||+.++......                                     
T Consensus       121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-------------------------------------  163 (695)
T 2bkl_A          121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-------------------------------------  163 (695)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-------------------------------------
T ss_pred             EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-------------------------------------
Confidence            3588899999999998     5566689999999865422000                                     


Q ss_pred             eeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCc-------------EEEEeCCCCc----eEEEeccCCccEEE
Q psy16881        103 RVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKT-------------VKLWDVPSLT----CIKTLESHTRYVTC  165 (222)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~-------------I~iwd~~~~~----~~~~~~~~~~~V~~  165 (222)
                                .+....  ...++|+|+|+.|+.++.|..             |++|++.+++    ++.....+...+..
T Consensus       164 ----------~~~~~~--~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~  231 (695)
T 2bkl_A          164 ----------VIEGGK--YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQ  231 (695)
T ss_dssp             ----------CBSCCT--TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEE
T ss_pred             ----------ccCccc--ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEE
Confidence                      000001  134789999999998888776             9999998765    34444455567889


Q ss_pred             EEEcCCCCEEEEeeCCC----eEEEEeC
Q psy16881        166 CTFSCDDSLLASGSNDK----TVTIWDM  189 (222)
Q Consensus       166 ~~~s~~~~~l~s~s~D~----~i~lwd~  189 (222)
                      +.|||+|++|+.++.++    .|.++|.
T Consensus       232 ~~~SpDG~~l~~~~~~~~~~~~l~~~~~  259 (695)
T 2bkl_A          232 SDLSRDGKYLFVYILRGWSENDVYWKRP  259 (695)
T ss_dssp             EEECTTSCCEEEEEEETTTEEEEEEECT
T ss_pred             EEECCCCCEEEEEEeCCCCceEEEEEcC
Confidence            99999999998877665    6666665

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.95  E-value=4.8e-08  Score=78.77  Aligned_cols=182  Identities=10%  Similarity=0.044  Sum_probs=102.8

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc-eEEeeccCC---CcceeeccceecCccCCcccceeee--eeeeeEe
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS-LIMETNDRG---HTQGRIEGWGRVPACPLCRTRVFST--FVKQIIP  101 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  101 (222)
                      .....++++|+|+++++...+++|++|+.+... .+..+...+   .....+.....+.+.+.......+.  ....+..
T Consensus        91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~  170 (329)
T 3fvz_A           91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ  170 (329)
T ss_dssp             SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred             CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence            457889999999999999889999999986542 333332110   0000000000011111011111111  1112221


Q ss_pred             eeeeeeccCCccc----------cccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceEEEec--cCCccEEEEEE
Q psy16881        102 TRVGVYGQDSETV----------GRHTSAVTSVRFNHK-SSLLVSGSVDKTVKLWDVPSLTCIKTLE--SHTRYVTCCTF  168 (222)
Q Consensus       102 ~~~~~~~~~~~~~----------~~h~~~i~~l~~~~~-~~~l~sg~~dg~I~iwd~~~~~~~~~~~--~~~~~V~~~~~  168 (222)
                      .+.  .+.....+          .++......++++++ ++++++...++.|++||..+++.+..+.  .+...+..+++
T Consensus       171 ~~~--~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~  248 (329)
T 3fvz_A          171 FSP--SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISY  248 (329)
T ss_dssp             ECT--TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEE
T ss_pred             EcC--CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeee
Confidence            110  00000011          112234788999998 6777777788899999998888887774  34556888999


Q ss_pred             cC------CCCEEEEeeCCCeEEEEeCC--------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        169 SC------DDSLLASGSNDKTVTIWDML--------------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       169 s~------~~~~l~s~s~D~~i~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      +|      +|+..++.+.+..|++||+.                          +.++++...++.|++|++.+.
T Consensus       249 ~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          249 IPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             ETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             cCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence            99      33322223344488888842                          235666667788888888643

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.92  E-value=2.5e-08  Score=82.46  Aligned_cols=107  Identities=13%  Similarity=0.082  Sum_probs=78.9

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      +.. |..|+|  |+++|+++ .++.|++||+.+.......                                        
T Consensus        87 lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~----------------------------------------  122 (388)
T 1xip_A           87 IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTV----------------------------------------  122 (388)
T ss_dssp             CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEE----------------------------------------
T ss_pred             CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCcc----------------------------------------
Confidence            345 999999  99999998 8899999998743211000                                        


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                               ..|...+.++.+.+.  .++.++.||.|.+||++++....    +...|+|++|||+|  ++.|..||+++
T Consensus       123 ---------~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~  185 (388)
T 1xip_A          123 ---------TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQ  185 (388)
T ss_dssp             ---------EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred             ---------ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence                     113334555555433  38889999999999999877643    34579999999999  67889999999


Q ss_pred             EEeCCCCe
Q psy16881        186 IWDMLATL  193 (222)
Q Consensus       186 lwd~~~~~  193 (222)
                      +|+.....
T Consensus       186 ~~~~~~~~  193 (388)
T 1xip_A          186 SFAWRNGE  193 (388)
T ss_dssp             EEEEETTE
T ss_pred             EEcCCCcc
Confidence            99765433

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.91  E-value=8.7e-08  Score=75.66  Aligned_cols=125  Identities=15%  Similarity=0.090  Sum_probs=94.3

Q ss_pred             CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCCcccccc
Q psy16881         38 DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRH  117 (222)
Q Consensus        38 dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  117 (222)
                      .+++|++++.|+.|++||.++++.+.++..                                                 +
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~-------------------------------------------------~   34 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL-------------------------------------------------E   34 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEEC-------------------------------------------------C
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCC-------------------------------------------------C
Confidence            458899999999999999988877655421                                                 1


Q ss_pred             C-CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCC-ccEEEEEEcCCCCEEEEeeC-CCeEEEEeCC----
Q psy16881        118 T-SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT-RYVTCCTFSCDDSLLASGSN-DKTVTIWDML----  190 (222)
Q Consensus       118 ~-~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-~~V~~~~~s~~~~~l~s~s~-D~~i~lwd~~----  190 (222)
                      . ..+..+.+.|+|++++  +.++.|..||. +++.+.++..+. ..+.++.+.++|+++++.+. ++.+..+|..    
T Consensus        35 ~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l  111 (276)
T 3no2_A           35 KGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVL  111 (276)
T ss_dssp             TTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEE
T ss_pred             ccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEE
Confidence            1 2345677889999888  34778999998 788888887653 46888999999999998876 5566555532    


Q ss_pred             ------------------------CCeEEEeeCCCcEEEEeCCCCccc
Q psy16881        191 ------------------------ATLLASGSNDKTVTIWDMRGNLSV  214 (222)
Q Consensus       191 ------------------------~~~l~s~~~d~~i~iwd~~~~~~~  214 (222)
                                              ..++++...++.|..||.+++...
T Consensus       112 ~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w  159 (276)
T 3no2_A          112 SKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLN  159 (276)
T ss_dssp             EEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEE
T ss_pred             EEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEE
Confidence                                    246777778899999999877653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.89  E-value=5.9e-08  Score=86.20  Aligned_cols=112  Identities=11%  Similarity=0.121  Sum_probs=81.2

Q ss_pred             ceEEEEEcCCCCeEEEecCCC-----eEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         29 NMRCVRFSPDTRLLATGGDDE-----TVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        29 ~v~~l~~spdg~~l~tgs~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      .+..++|||||++||.++.++     +|++||+.+++......                                     
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-------------------------------------  168 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-------------------------------------  168 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-------------------------------------
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-------------------------------------
Confidence            578899999999998766544     89999988654432110                                     


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCc----------------EEEEeCCCCc----eEEEeccCCccE
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKT----------------VKLWDVPSLT----CIKTLESHTRYV  163 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~----------------I~iwd~~~~~----~~~~~~~~~~~V  163 (222)
                                 .  ...+..++|+|+|+.|+.++.++.                |.+|++.+++    .+.....|...+
T Consensus       169 -----------~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~  235 (710)
T 2xdw_A          169 -----------E--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWM  235 (710)
T ss_dssp             -----------E--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred             -----------c--CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEE
Confidence                       0  011345889999998888887766                9999998765    233333355667


Q ss_pred             EEEEEcCCCCEEEEeeC-----CCeEEEEeCC
Q psy16881        164 TCCTFSCDDSLLASGSN-----DKTVTIWDML  190 (222)
Q Consensus       164 ~~~~~s~~~~~l~s~s~-----D~~i~lwd~~  190 (222)
                      ..+.|||+|++|+.++.     +..|.+||+.
T Consensus       236 ~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~  267 (710)
T 2xdw_A          236 GGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ  267 (710)
T ss_dssp             EEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred             EEEEEcCCCCEEEEEEEccCCCccEEEEEECc
Confidence            88999999999987764     5689999874

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.87  E-value=9e-08  Score=83.96  Aligned_cols=161  Identities=12%  Similarity=0.051  Sum_probs=94.4

Q ss_pred             ccceEEEEEcCCCCeEEEe--cCCCeEEEEeCCCCceEEeeccCCCc-ceeeccceecCc----cCCccc-ceeeeee-e
Q psy16881         27 GSNMRCVRFSPDTRLLATG--GDDETVTVWRSDDLSLIMETNDRGHT-QGRIEGWGRVPA----CPLCRT-RVFSTFV-K   97 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tg--s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~-~~~~~~~-~   97 (222)
                      +..+..++|++++-+++..  +.+++..||................. ...+..+.....    +++... .++.... .
T Consensus        23 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~  102 (662)
T 3azo_A           23 SGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQ  102 (662)
T ss_dssp             CSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTC
T ss_pred             CCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCC
Confidence            5678999999887777777  66889999985433222222111100 000000000000    122333 3333221 1


Q ss_pred             eeEeeeeeee--c-cCCccccc-----cCCCEEEEEEcCCCCEEEEEeCC----------CcEEEEeCCC------CceE
Q psy16881         98 QIIPTRVGVY--G-QDSETVGR-----HTSAVTSVRFNHKSSLLVSGSVD----------KTVKLWDVPS------LTCI  153 (222)
Q Consensus        98 ~~~~~~~~~~--~-~~~~~~~~-----h~~~i~~l~~~~~~~~l~sg~~d----------g~I~iwd~~~------~~~~  153 (222)
                      .+...+  ..  + .....+..     |...+..++|+|+|+.|+.++.+          ..|.+||+.+      ++. 
T Consensus       103 ~l~~~~--~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-  179 (662)
T 3azo_A          103 RLYAFE--PDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-  179 (662)
T ss_dssp             CEEEEC--TTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-
T ss_pred             eEEEEc--CCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-
Confidence            121111  11  1 22222333     56678899999999999988877          5899999987      543 


Q ss_pred             EEec-cCCccEEEEEEcCCCCEEEEeeCCC--------eEEEEeCC
Q psy16881        154 KTLE-SHTRYVTCCTFSCDDSLLASGSNDK--------TVTIWDML  190 (222)
Q Consensus       154 ~~~~-~~~~~V~~~~~s~~~~~l~s~s~D~--------~i~lwd~~  190 (222)
                      ..+. .+...+..++|||+|+.|+.++.++        .|.+||+.
T Consensus       180 ~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~  225 (662)
T 3azo_A          180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVT  225 (662)
T ss_dssp             EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEEC
T ss_pred             eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEEC
Confidence            4555 5567788899999999999877553        68888764

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.84  E-value=1.4e-07  Score=77.05  Aligned_cols=154  Identities=14%  Similarity=0.027  Sum_probs=86.3

Q ss_pred             eEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCccccee-----------------
Q psy16881         30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF-----------------   92 (222)
Q Consensus        30 v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------   92 (222)
                      +..++|+|||+.|+.++.++.|++||+.+++............. ...+.   ..........                 
T Consensus        83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~-~~~~~---~~~dg~~l~~~~~~~~~~~~~~~~~~~  158 (388)
T 3pe7_A           83 TFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVG-YGTWV---ANSDCTKLVGIEIRREDWVPLTDWKKF  158 (388)
T ss_dssp             SSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEE-EEEEE---ECTTSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred             ccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhccc-cccee---ECCCCCeeccccccCcccccccccchh
Confidence            33568999999999999999999999988765433211111000 00000   0000000000                 


Q ss_pred             -----eeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcC-CCCEEEEEeCC------CcEEEEeCCCCceEEEeccCC
Q psy16881         93 -----STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNH-KSSLLVSGSVD------KTVKLWDVPSLTCIKTLESHT  160 (222)
Q Consensus        93 -----~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~sg~~d------g~I~iwd~~~~~~~~~~~~~~  160 (222)
                           ......+..++.  .......+..+...+..++|+| +|+.++....+      ..|.++|....+ ...+..+.
T Consensus       159 ~~~~~~~~~~~l~~~d~--~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~  235 (388)
T 3pe7_A          159 HEFYFTKPCCRLMRVDL--KTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHA  235 (388)
T ss_dssp             HHHGGGCCCEEEEEEET--TTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCC
T ss_pred             hhhhccCCcceEEEEEC--CCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCC
Confidence                 000011111111  1112223334566788999999 99888776653      367778876543 34444444


Q ss_pred             --ccEEEEEEcCCCCEEEEeeCC-----CeEEEEeCC
Q psy16881        161 --RYVTCCTFSCDDSLLASGSND-----KTVTIWDML  190 (222)
Q Consensus       161 --~~V~~~~~s~~~~~l~s~s~D-----~~i~lwd~~  190 (222)
                        ..+....|+|+|+.|+..+.+     +.|.+||+.
T Consensus       236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  272 (388)
T 3pe7_A          236 EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPE  272 (388)
T ss_dssp             TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTT
T ss_pred             CCcccccceECCCCCEEEEEecCCCCCcceEEEEecC
Confidence              357788999999987664432     239999974

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.83  E-value=9.6e-07  Score=70.67  Aligned_cols=134  Identities=9%  Similarity=0.049  Sum_probs=92.0

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ...+..++|+|+|++++++..++.|.+|+.+++......                                         
T Consensus        44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-----------------------------------------   82 (333)
T 2dg1_A           44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-----------------------------------------   82 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-----------------------------------------
T ss_pred             CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe-----------------------------------------
Confidence            345788999999998888888999999987654321100                                         


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCceEEEec--cCCccEEEEEEcCCCCEEEEeeC
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVD----KTVKLWDVPSLTCIKTLE--SHTRYVTCCTFSCDDSLLASGSN  180 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~d----g~I~iwd~~~~~~~~~~~--~~~~~V~~~~~s~~~~~l~s~s~  180 (222)
                              ..+...+.+++++++++++++...+    +.|.+||..+++....+.  .+...+..+.++++|+++++...
T Consensus        83 --------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  154 (333)
T 2dg1_A           83 --------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFR  154 (333)
T ss_dssp             --------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECC
T ss_pred             --------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecc
Confidence                    0123457889999999987777666    689999988765543332  23456889999999998887653


Q ss_pred             ------CCeEEEEeCC----------------------CCeE-EEeeCCCcEEEEeCC
Q psy16881        181 ------DKTVTIWDML----------------------ATLL-ASGSNDKTVTIWDMR  209 (222)
Q Consensus       181 ------D~~i~lwd~~----------------------~~~l-~s~~~d~~i~iwd~~  209 (222)
                            .+.|..+|..                      ...+ ++.+.++.|.+||++
T Consensus       155 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          155 GYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE  212 (333)
T ss_dssp             CBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             ccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEec
Confidence                  2445555532                      2223 444456789999985

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.81  E-value=3.2e-07  Score=75.07  Aligned_cols=66  Identities=11%  Similarity=0.129  Sum_probs=56.2

Q ss_pred             EEEcCCCCEEEEEeC-----------CCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCCCC
Q psy16881        124 VRFNHKSSLLVSGSV-----------DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLAT  192 (222)
Q Consensus       124 l~~~~~~~~l~sg~~-----------dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~~  192 (222)
                      ++++++++.++.+..           .+.|.+||+.+++.+..+..+.  +..++|+|+|++|++++. ++|.+||..+.
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence            678999887776543           3479999999999999998877  889999999999998887 99999998754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.80  E-value=3.6e-07  Score=72.10  Aligned_cols=134  Identities=8%  Similarity=-0.016  Sum_probs=97.1

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY  107 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (222)
                      ..+.+++++|+|++|++  .++.|+.||. +++.+.++..                                        
T Consensus        37 ~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~----------------------------------------   73 (276)
T 3no2_A           37 WECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAA----------------------------------------   73 (276)
T ss_dssp             CCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEEC----------------------------------------
T ss_pred             CCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcC----------------------------------------
Confidence            35788899999998883  5788999988 6665554310                                        


Q ss_pred             ccCCccccccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCceEEEecc------CCccEEEEEEcCCCCEEEEeeC
Q psy16881        108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSV-DKTVKLWDVPSLTCIKTLES------HTRYVTCCTFSCDDSLLASGSN  180 (222)
Q Consensus       108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~-dg~I~iwd~~~~~~~~~~~~------~~~~V~~~~~s~~~~~l~s~s~  180 (222)
                              +....+.++++.++|+++++.+. ++.|..+|. +++.+.++..      +......+++.++|+++++.+.
T Consensus        74 --------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~  144 (276)
T 3no2_A           74 --------PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA  144 (276)
T ss_dssp             --------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT
T ss_pred             --------CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC
Confidence                    01123556778899999998887 677777775 6777666542      2223455678899999999999


Q ss_pred             CCeEEEEeCC---------------------CCeEEEeeCCCcEEEEeCC-CCcc
Q psy16881        181 DKTVTIWDML---------------------ATLLASGSNDKTVTIWDMR-GNLS  213 (222)
Q Consensus       181 D~~i~lwd~~---------------------~~~l~s~~~d~~i~iwd~~-~~~~  213 (222)
                      ++.|..||..                     ...+++++.++.|..+|.. ++..
T Consensus       145 ~~~v~~~d~~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~  199 (276)
T 3no2_A          145 TSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIV  199 (276)
T ss_dssp             TTEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEE
T ss_pred             CCEEEEECCCCCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE
Confidence            9999999974                     3457777777789999988 7664

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.80  E-value=7.1e-07  Score=77.47  Aligned_cols=134  Identities=14%  Similarity=0.136  Sum_probs=90.5

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCC--CCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSD--DLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      +..+..+.|+|||++|++++.|+.|.+||+.  +.+.+.+..                                      
T Consensus       196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~--------------------------------------  237 (567)
T 1qks_A          196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK--------------------------------------  237 (567)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE--------------------------------------
T ss_pred             CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe--------------------------------------
Confidence            4557789999999999999999999999985  332222110                                      


Q ss_pred             eeeccCCccccccCCCEEEEEEc----CCCCEEEEEeC-CCcEEEEeCCCCceEEEeccC-----------CccEEEEEE
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFN----HKSSLLVSGSV-DKTVKLWDVPSLTCIKTLESH-----------TRYVTCCTF  168 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~----~~~~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~-----------~~~V~~~~~  168 (222)
                                  .......++|+    |+|+++++++. ++.|.|+|..+.+.+..+...           ...+..+..
T Consensus       238 ------------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~  305 (567)
T 1qks_A          238 ------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA  305 (567)
T ss_dssp             ------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred             ------------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE
Confidence                        01123568898    69987777655 589999999998887765421           124667777


Q ss_pred             cCCCCEEE-EeeCCCeEEEEeCC------------------------CCeE-EEeeCCCcEEEEeCCC
Q psy16881        169 SCDDSLLA-SGSNDKTVTIWDML------------------------ATLL-ASGSNDKTVTIWDMRG  210 (222)
Q Consensus       169 s~~~~~l~-s~s~D~~i~lwd~~------------------------~~~l-~s~~~d~~i~iwd~~~  210 (222)
                      ++++..++ ....+|+|.++|..                        ..++ ++...+++|.++|+++
T Consensus       306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t  373 (567)
T 1qks_A          306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  373 (567)
T ss_dssp             CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence            77765444 44556777777642                        2333 4444567888898873

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.80  E-value=6e-08  Score=80.18  Aligned_cols=138  Identities=13%  Similarity=0.105  Sum_probs=97.7

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeec
Q psy16881         29 NMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYG  108 (222)
Q Consensus        29 ~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (222)
                      .++.+++++...+|++|+.+ .+.+|+.++.+...... .    ..+                                 
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~-~----~~~---------------------------------   79 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSD-S----TPL---------------------------------   79 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSS-S----CCC---------------------------------
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccc-c----ccc---------------------------------
Confidence            58889999999999999987 56669865432100000 0    000                                 


Q ss_pred             cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEe
Q psy16881        109 QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD  188 (222)
Q Consensus       109 ~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd  188 (222)
                       +......+.. |..++|  ++++|+++ .++.|++||+.+.........++..+.++.+.+.  .+++++.||.+.+||
T Consensus        80 -~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~d  152 (388)
T 1xip_A           80 -TFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALD  152 (388)
T ss_dssp             -CCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEE
T ss_pred             -cceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEE
Confidence             0000012455 999999  78999988 8899999999877666666677777887776543  388899999999999


Q ss_pred             CCC-----------------CeEEEeeCCCcEEEEeCCCCc
Q psy16881        189 MLA-----------------TLLASGSNDKTVTIWDMRGNL  212 (222)
Q Consensus       189 ~~~-----------------~~l~s~~~d~~i~iwd~~~~~  212 (222)
                      +..                 .-++.|..|++|++|+..+..
T Consensus       153 l~~~~~~~~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~  193 (388)
T 1xip_A          153 LRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE  193 (388)
T ss_dssp             TTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETTE
T ss_pred             ccCCccccccCCceEEEEcCCceEEEEcCCcEEEEcCCCcc
Confidence            851                 236778899999999887543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.79  E-value=3e-07  Score=74.99  Aligned_cols=96  Identities=15%  Similarity=0.062  Sum_probs=65.7

Q ss_pred             EEEcCCCCeEEEecC-CCe--EEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeecc
Q psy16881         33 VRFSPDTRLLATGGD-DET--VTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQ  109 (222)
Q Consensus        33 l~~spdg~~l~tgs~-Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (222)
                      .+|||||++|+.++. +|.  |.+||+.++......                                            
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt--------------------------------------------   76 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT--------------------------------------------   76 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC--------------------------------------------
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee--------------------------------------------
Confidence            689999999888887 774  677777654332111                                            


Q ss_pred             CCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEE--EcCCCCEEEE
Q psy16881        110 DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCT--FSCDDSLLAS  177 (222)
Q Consensus       110 ~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~--~s~~~~~l~s  177 (222)
                           ..+...+..+.|+|+++.|+.++.++.|.+||+.+++.......+...+....  +++++.+++.
T Consensus        77 -----~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~  141 (388)
T 3pe7_A           77 -----EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVG  141 (388)
T ss_dssp             -----CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEE
T ss_pred             -----eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeecc
Confidence                 01222222356999999999999889999999998876655555555554333  4788888874

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.77  E-value=5.3e-07  Score=69.86  Aligned_cols=135  Identities=7%  Similarity=-0.021  Sum_probs=91.6

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY  107 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (222)
                      ..+..++++|+|+++++...++.|.+|+..+......                                           
T Consensus       108 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~-------------------------------------------  144 (270)
T 1rwi_B          108 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL-------------------------------------------  144 (270)
T ss_dssp             SSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC-------------------------------------------
T ss_pred             CCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee-------------------------------------------
Confidence            4577888888888777777778888885432111000                                           


Q ss_pred             ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEE
Q psy16881        108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW  187 (222)
Q Consensus       108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lw  187 (222)
                            .......+..++++++++++++...++.|.+||............+...+..++++++|.++++...++.|.+|
T Consensus       145 ------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~  218 (270)
T 1rwi_B          145 ------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKL  218 (270)
T ss_dssp             ------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEE
T ss_pred             ------ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEE
Confidence                  00011234568889989877777778899999987665443333333568899999999888887778899999


Q ss_pred             eCC-----------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        188 DML-----------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       188 d~~-----------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      |..                       ..++++...++.|+++++..+
T Consensus       219 ~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          219 LAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             CTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             cCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            863                       234555556777888877644

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.75  E-value=3.9e-07  Score=74.28  Aligned_cols=155  Identities=12%  Similarity=-0.005  Sum_probs=83.9

Q ss_pred             EEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCC-c-ceeecccee-----------cCccCCcccceee-----e
Q psy16881         33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGH-T-QGRIEGWGR-----------VPACPLCRTRVFS-----T   94 (222)
Q Consensus        33 l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~-~-~~~~~~~~~-----------~~~~~~~~~~~~~-----~   94 (222)
                      +.|+|||++|+.++.++.|++|++.++........... . .+....+..           ....+......+.     .
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~  165 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTN  165 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTC
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCC
Confidence            67999999999999999999999987664432211110 0 000000000           0011111111100     0


Q ss_pred             eeeeeEeeeeeeeccCCccccccCCCEEEEEEcC-CCCEEEEEeCC------CcEEEEeCCCCceEEEeccC--CccEEE
Q psy16881         95 FVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNH-KSSLLVSGSVD------KTVKLWDVPSLTCIKTLESH--TRYVTC  165 (222)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~sg~~d------g~I~iwd~~~~~~~~~~~~~--~~~V~~  165 (222)
                      ....+..++.  .......+..+...+..+.|+| +++.++..+.+      ..|.+||+..++. ..+..+  ...+..
T Consensus       166 ~~~~l~~~d~--~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~  242 (396)
T 3c5m_A          166 PTCRLIKVDI--ETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTH  242 (396)
T ss_dssp             CCEEEEEEET--TTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEE
T ss_pred             CcceEEEEEC--CCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccc
Confidence            1111222211  1111112223566788899999 77766665543      3588888865543 333333  235788


Q ss_pred             EEEcCCCCEEEEeeCC-----CeEEEEeCC
Q psy16881        166 CTFSCDDSLLASGSND-----KTVTIWDML  190 (222)
Q Consensus       166 ~~~s~~~~~l~s~s~D-----~~i~lwd~~  190 (222)
                      +.|+|+|+.|+.++.+     +.|.+||+.
T Consensus       243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  272 (396)
T 3c5m_A          243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPE  272 (396)
T ss_dssp             EEECTTSSCEEEEEEETTTCCEEEEEECTT
T ss_pred             eEECCCCCEEEEEecCCCCccceEEEEECC
Confidence            9999999988776544     449999873

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.72  E-value=1.8e-06  Score=69.57  Aligned_cols=177  Identities=10%  Similarity=0.057  Sum_probs=104.4

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCC-----cceeeccceecCccCCcccceeeee---eee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGH-----TQGRIEGWGRVPACPLCRTRVFSTF---VKQ   98 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~   98 (222)
                      ......+++++++++.++...+++|.+||..+.+..........     .+..+.      .   .....+...   ...
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~------~---~~~~lyv~~~~~~~~  153 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMV------Q---YGKYVYVNCWSYQNR  153 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEE------E---ETTEEEEEECTTCCE
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEE------E---ECCEEEEEcCCCCCE
Confidence            46678899999996655555899999999998876654421110     110000      0   011111111   112


Q ss_pred             eEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCC----------CcEEEEeCCCCceEEEeccC-CccEEEEE
Q psy16881         99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVD----------KTVKLWDVPSLTCIKTLESH-TRYVTCCT  167 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~d----------g~I~iwd~~~~~~~~~~~~~-~~~V~~~~  167 (222)
                      +...+... ......+. .......+.++++|++++++..+          +.|.++|..+++....+... ...+..++
T Consensus       154 v~viD~~t-~~~~~~i~-~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la  231 (328)
T 3dsm_A          154 ILKIDTET-DKVVDELT-IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQ  231 (328)
T ss_dssp             EEEEETTT-TEEEEEEE-CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEE
T ss_pred             EEEEECCC-CeEEEEEE-cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEE
Confidence            22211100 00000111 11223567889999877776554          78999999988877666432 23578999


Q ss_pred             EcCCCCEEEEeeCCCeEEEEeCC--------------------------CCeEEEe----eCCCcEEEEeCCCCccccC
Q psy16881        168 FSCDDSLLASGSNDKTVTIWDML--------------------------ATLLASG----SNDKTVTIWDMRGNLSVDV  216 (222)
Q Consensus       168 ~s~~~~~l~s~s~D~~i~lwd~~--------------------------~~~l~s~----~~d~~i~iwd~~~~~~~~~  216 (222)
                      |+|+++.|+++..  .|.+||..                          ..+.++.    ..++.|.+||..+++...+
T Consensus       232 ~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i  308 (328)
T 3dsm_A          232 LNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEF  308 (328)
T ss_dssp             ECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEE
T ss_pred             EecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEE
Confidence            9999999887754  78888863                          1234444    4577899999887665443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.71  E-value=1.2e-06  Score=69.11  Aligned_cols=157  Identities=10%  Similarity=-0.026  Sum_probs=90.6

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee----------
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV----------   96 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------   96 (222)
                      ...+..++++|+|+++++...++.|.+|+..+++..........  ........+...+...  .+.+..          
T Consensus        68 ~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~--~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~  143 (296)
T 3e5z_A           68 SHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEG--KKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEG  143 (296)
T ss_dssp             CSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT--EECCCCCCEEECTTSC--EEEEECSHHHHCGGGS
T ss_pred             CCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC--CCCCCCCCEEECCCCC--EEEECCcccccccccc
Confidence            46688999999999988887789999999876654322110000  0000000001111111  111000          


Q ss_pred             -------eeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCce---EEEeccCCccEEE
Q psy16881         97 -------KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP-SLTC---IKTLESHTRYVTC  165 (222)
Q Consensus        97 -------~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~-~~~~---~~~~~~~~~~V~~  165 (222)
                             .....+..... .....+..+......++|+|+++.+++.+.++.|.+||+. +++.   ...+..+...+..
T Consensus       144 ~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~  222 (296)
T 3e5z_A          144 YGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDG  222 (296)
T ss_dssp             SCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCS
T ss_pred             ccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCe
Confidence                   00011111000 1111223345567889999999988888888999999986 4443   2233334455678


Q ss_pred             EEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        166 CTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       166 ~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      ++++++|+++++.  ++.|.+||..
T Consensus       223 i~~d~~G~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          223 LRVDAGGLIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             EEEBTTSCEEEEE--TTEEEEECTT
T ss_pred             EEECCCCCEEEEc--CCeEEEECCC
Confidence            9999999977666  7889999874

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.70  E-value=2.2e-07  Score=82.91  Aligned_cols=151  Identities=13%  Similarity=0.144  Sum_probs=84.9

Q ss_pred             EEEEEcCCCCeEEEecCC---------CeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEe
Q psy16881         31 RCVRFSPDTRLLATGGDD---------ETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIP  101 (222)
Q Consensus        31 ~~l~~spdg~~l~tgs~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (222)
                      ..++|||||++|+.++.+         +.+.+||+.++.......   +. ....   ...++++....++.. ...+..
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~---~~-~~~~---~~~~SPdG~~la~~~-~~~i~~  136 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEER---IP-NNTQ---WVTWSPVGHKLAYVW-NNDIYV  136 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC---CC-TTEE---EEEECSSTTCEEEEE-TTEEEE
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEccc---CC-Ccce---eeEECCCCCEEEEEE-CCeEEE
Confidence            347899999999998876         556799998876542111   10 0011   122334444333332 112222


Q ss_pred             eeeee--------eccCCccccccC---------CCEEEEEEcCCCCEEEEEeCCC------------------------
Q psy16881        102 TRVGV--------YGQDSETVGRHT---------SAVTSVRFNHKSSLLVSGSVDK------------------------  140 (222)
Q Consensus       102 ~~~~~--------~~~~~~~~~~h~---------~~i~~l~~~~~~~~l~sg~~dg------------------------  140 (222)
                      ++...        .+.....+.++.         .....++|+|+|+.|+.++.|.                        
T Consensus       137 ~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~  216 (740)
T 4a5s_A          137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV  216 (740)
T ss_dssp             ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred             EECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence            21100        000000111111         1123488999999888875332                        


Q ss_pred             ------------cEEEEeCCC---Cc--eEEEec------cCCccEEEEEEcCCCCEEEEeeC----CCeEEEEeC
Q psy16881        141 ------------TVKLWDVPS---LT--CIKTLE------SHTRYVTCCTFSCDDSLLASGSN----DKTVTIWDM  189 (222)
Q Consensus       141 ------------~I~iwd~~~---~~--~~~~~~------~~~~~V~~~~~s~~~~~l~s~s~----D~~i~lwd~  189 (222)
                                  .|.+||+.+   ++  ....+.      +|...+..++|+|+|+.++....    +..|.+||+
T Consensus       217 ~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~  292 (740)
T 4a5s_A          217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDY  292 (740)
T ss_dssp             ECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEE
T ss_pred             cCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEEC
Confidence                        478899987   63  223343      37788999999999997765533    347888884

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.70  E-value=2.6e-06  Score=65.89  Aligned_cols=175  Identities=7%  Similarity=0.007  Sum_probs=98.5

Q ss_pred             ceEEEEEcCCCCeEE-EecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881         29 NMRCVRFSPDTRLLA-TGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY  107 (222)
Q Consensus        29 ~v~~l~~spdg~~l~-tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (222)
                      ....++++++|++++ +...++.|..|+..+.......  ...... ...   +....... ...+.....+...+.  .
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~-p~~---i~~~~~g~-l~v~~~~~~i~~~d~--~   95 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP--FNGLYQ-PQG---LAVDGAGT-VYVTDFNNRVVTLAA--G   95 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC--CCSCCS-CCC---EEECTTCC-EEEEETTTEEEEECT--T
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe--eCCcCC-cce---eEECCCCC-EEEEcCCCEEEEEeC--C
Confidence            577899999999777 5577899999987544322111  000000 000   00111111 111111112221110  0


Q ss_pred             ccCCcccc-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881        108 GQDSETVG-RHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI  186 (222)
Q Consensus       108 ~~~~~~~~-~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l  186 (222)
                      +.....+. .....+..++++++++.+++...++.|.+|+..+.............+..++++++|+++++...++.|.+
T Consensus        96 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~  175 (270)
T 1rwi_B           96 SNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK  175 (270)
T ss_dssp             CSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred             CceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence            11111111 12256789999999997777777889999987655433322233345778999999998877777889999


Q ss_pred             EeCC-----------------------CCeEEEeeCCCcEEEEeCCCCc
Q psy16881        187 WDML-----------------------ATLLASGSNDKTVTIWDMRGNL  212 (222)
Q Consensus       187 wd~~-----------------------~~~l~s~~~d~~i~iwd~~~~~  212 (222)
                      ||..                       +.+.++...++.|.+||..+..
T Consensus       176 ~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~  224 (270)
T 1rwi_B          176 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  224 (270)
T ss_dssp             ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred             EecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence            9863                       2344544557789999987654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.58  E-value=2.8e-06  Score=75.39  Aligned_cols=72  Identities=6%  Similarity=-0.047  Sum_probs=49.4

Q ss_pred             cCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEeCCC------Cc-eEEEeccCCccEEEEEEcCCCCEEEEeeCC---
Q psy16881        117 HTSAVTSVRFNHKSSLLVSGSV-----DKTVKLWDVPS------LT-CIKTLESHTRYVTCCTFSCDDSLLASGSND---  181 (222)
Q Consensus       117 h~~~i~~l~~~~~~~~l~sg~~-----dg~I~iwd~~~------~~-~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D---  181 (222)
                      |...+..+.|+|+|++++..+.     +..|.+||+.+      +. ....+..+...+.. .|+++|..|+..+..   
T Consensus       231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~  309 (710)
T 2xdw_A          231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSP  309 (710)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCT
T ss_pred             CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCC
Confidence            3445677899999998777764     56899999875      42 34555555555544 478888877766543   


Q ss_pred             -CeEEEEeC
Q psy16881        182 -KTVTIWDM  189 (222)
Q Consensus       182 -~~i~lwd~  189 (222)
                       +.|.+||+
T Consensus       310 ~~~l~~~d~  318 (710)
T 2xdw_A          310 NYRLINIDF  318 (710)
T ss_dssp             TCEEEEEET
T ss_pred             CCEEEEEeC
Confidence             36888876

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.57  E-value=8.6e-07  Score=71.23  Aligned_cols=58  Identities=17%  Similarity=0.257  Sum_probs=43.1

Q ss_pred             EEEEEEcCCCCEEEEEeCC---------------------------CcEEEEeCCCCceEEEeccCCccEEEEEEcCCCC
Q psy16881        121 VTSVRFNHKSSLLVSGSVD---------------------------KTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS  173 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg~~d---------------------------g~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~  173 (222)
                      +..++|+|+|+.|+.++.+                           ..|.+||+.+++.+..+.. . .+..+.|+|+| 
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-  182 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-  182 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-
Confidence            6778889988877776532                           5688999988776444444 3 67889999999 


Q ss_pred             EEEEeeCC
Q psy16881        174 LLASGSND  181 (222)
Q Consensus       174 ~l~s~s~D  181 (222)
                      +++++..+
T Consensus       183 ~~~~~~~~  190 (347)
T 2gop_A          183 IVVNVPHR  190 (347)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecc
Confidence            77777654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.52  E-value=1.5e-06  Score=71.10  Aligned_cols=52  Identities=13%  Similarity=0.229  Sum_probs=45.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ceEEEeccCCccEEEEEEcCCCC
Q psy16881        121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSL--TCIKTLESHTRYVTCCTFSCDDS  173 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~~~~V~~~~~s~~~~  173 (222)
                      +..++|+|+|+++++++. +.|.+||..++  +.+..+...-.....++++|+|+
T Consensus       307 p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          307 ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            678999999999998887 99999999999  88888766666778899999985

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.52  E-value=9.7e-07  Score=78.81  Aligned_cols=110  Identities=16%  Similarity=0.102  Sum_probs=74.8

Q ss_pred             ceEEEEEcCCCCeEEEecCC-----CeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         29 NMRCVRFSPDTRLLATGGDD-----ETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        29 ~v~~l~~spdg~~l~tgs~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      .+..++|||||++||.++.+     .+|++||+.+++......                                     
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-------------------------------------  206 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-------------------------------------  206 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-------------------------------------
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-------------------------------------
Confidence            57789999999999877654     469999988665432100                                     


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCc--------------EEEEeCCCCc----eEEEeccCCccEEE
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKT--------------VKLWDVPSLT----CIKTLESHTRYVTC  165 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~--------------I~iwd~~~~~----~~~~~~~~~~~V~~  165 (222)
                                   +...+..++|+|+ +.|+.++.++.              |.+|++.+++    .+.....+...+..
T Consensus       207 -------------~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~  272 (741)
T 1yr2_A          207 -------------KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG  272 (741)
T ss_dssp             -------------EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             -------------CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence                         0001124668888 77777766543              8899987654    33333334446889


Q ss_pred             EEEcCCCCEEEEeeCCC-----eEEEEeC
Q psy16881        166 CTFSCDDSLLASGSNDK-----TVTIWDM  189 (222)
Q Consensus       166 ~~~s~~~~~l~s~s~D~-----~i~lwd~  189 (222)
                      +.|||+|++|+..+.++     .|.+||+
T Consensus       273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~  301 (741)
T 1yr2_A          273 ASVSSDGRWVVITSSEGTDPVNTVHVARV  301 (741)
T ss_dssp             EEECTTSCEEEEEEECTTCSCCEEEEEEE
T ss_pred             EEECCCCCEEEEEEEccCCCcceEEEEEC
Confidence            99999999988777543     7888886

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.52  E-value=5.2e-06  Score=65.37  Aligned_cols=106  Identities=9%  Similarity=0.070  Sum_probs=74.5

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCC-CCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSD-DLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      ......++|+|+|++|++.+.++.|.+|++. ++......                                       .
T Consensus       171 ~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~---------------------------------------~  211 (296)
T 3e5z_A          171 RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQG---------------------------------------V  211 (296)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEE---------------------------------------E
T ss_pred             CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCC---------------------------------------e
Confidence            3456789999999988888888999999875 22210000                                       0


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEE-cCCCCEEEEeeCCC
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTF-SCDDSLLASGSNDK  182 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~-s~~~~~l~s~s~D~  182 (222)
                      ..       ..+...+..++++++|+++++.  ++.|.+||.. ++.+..+..+.. +.+++| +++++.|+.++.++
T Consensus       212 ~~-------~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          212 HF-------TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             EE-------CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred             Ee-------eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence            00       0012223457899999866665  7899999976 777777777766 889999 58888888888764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.51  E-value=7.2e-05  Score=58.24  Aligned_cols=113  Identities=7%  Similarity=-0.024  Sum_probs=78.5

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ...+.+++++++|+++++...++.|..|+.. +.... ..              .                         
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~--------------~-------------------------   52 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKITE-YP--------------L-------------------------   52 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EE--------------C-------------------------
T ss_pred             CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ec--------------C-------------------------
Confidence            4678999999999988887778999999875 32111 00              0                         


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-EEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC-IKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~-~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                              ..+...+..++++++++++++...++.|..||.. ++. ..........+..++++++++++++...++.|.
T Consensus        53 --------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  123 (299)
T 2z2n_A           53 --------PTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIG  123 (299)
T ss_dssp             --------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             --------CcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEE
Confidence                    0012346778888888877777767889999876 332 122222345688899999998888777777888


Q ss_pred             EEeC
Q psy16881        186 IWDM  189 (222)
Q Consensus       186 lwd~  189 (222)
                      .||.
T Consensus       124 ~~d~  127 (299)
T 2z2n_A          124 RITD  127 (299)
T ss_dssp             EECT
T ss_pred             EECC
Confidence            8875

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.48  E-value=3.7e-05  Score=61.29  Aligned_cols=158  Identities=13%  Similarity=0.091  Sum_probs=87.5

Q ss_pred             ccceEEEEEcCCCCeEEEecCC----CeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee-----
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDD----ETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK-----   97 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   97 (222)
                      ...+.+++++|+|+++++...+    +.|.+|+.++............. .....   +...+... ........     
T Consensus        86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~---i~~d~~g~-l~v~~~~~~~~~~  160 (333)
T 2dg1_A           86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA-YCIDD---MVFDSKGG-FYFTDFRGYSTNP  160 (333)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC-CCEEE---EEECTTSC-EEEEECCCBTTBC
T ss_pred             CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC-Ccccc---eEECCCCC-EEEEeccccccCC
Confidence            4668999999999988877666    68999998776543222111100 00000   01111111 11111100     


Q ss_pred             eeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCC-CceEE--------EeccCCccEEEEE
Q psy16881         98 QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLL-VSGSVDKTVKLWDVPS-LTCIK--------TLESHTRYVTCCT  167 (222)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~sg~~dg~I~iwd~~~-~~~~~--------~~~~~~~~V~~~~  167 (222)
                      ....+...........+..+...+..++|+++++.+ ++.+.++.|.+||..+ ++.+.        .+.++ ..+..++
T Consensus       161 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~  239 (333)
T 2dg1_A          161 LGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCC  239 (333)
T ss_dssp             CEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEE
T ss_pred             CceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceE
Confidence            001111100000111111223457789999999855 4555678999999863 33221        11222 4678899


Q ss_pred             EcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        168 FSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       168 ~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      ++++|+++++...++.|.+||..
T Consensus       240 ~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          240 IDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             EBTTCCEEEEEETTTEEEEECTT
T ss_pred             ECCCCCEEEEEcCCCEEEEECCC
Confidence            99999988888788899999874

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.48  E-value=8.5e-06  Score=65.32  Aligned_cols=65  Identities=9%  Similarity=0.113  Sum_probs=46.9

Q ss_pred             CCEEEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCceEEEeccCCccEEE-EEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881        119 SAVTSVRFNHKSSLLVSGSVD--------KTVKLWDVPSLTCIKTLESHTRYVTC-CTFSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~sg~~d--------g~I~iwd~~~~~~~~~~~~~~~~V~~-~~~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      ..+..+  +|+|+.++.++.+        ..|.+||  +++.......+...+.. +.|+ ++ ++++++.++.++|| +
T Consensus       217 ~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~  289 (347)
T 2gop_A          217 VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-I  289 (347)
T ss_dssp             ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-E
T ss_pred             cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-E
Confidence            344444  8999887776644        3688888  55544444556677886 8999 88 88899999999999 6


Q ss_pred             C
Q psy16881        190 L  190 (222)
Q Consensus       190 ~  190 (222)
                      .
T Consensus       290 ~  290 (347)
T 2gop_A          290 W  290 (347)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.43  E-value=0.00019  Score=55.79  Aligned_cols=153  Identities=10%  Similarity=0.023  Sum_probs=87.0

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee-eeeeEeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF-VKQIIPTRVG  105 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  105 (222)
                      ...+.+++++++|++.++...++.|.+|+.. +.... ......... ...   +...... ....... ...+...+..
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~-~~~---i~~~~~g-~l~v~~~~~~~v~~~d~~   91 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAK-VMC---LIVSSLG-DIWFTENGANKIGKLSKK   91 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCC-EEE---EEECTTS-CEEEEETTTTEEEEECTT
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCc-cee---EEECCCC-CEEEEecCCCeEEEECCC
Confidence            4578899999999988887788999999987 44332 111110000 000   0000000 0111111 0111111100


Q ss_pred             eeccC-CccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE-EeccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881        106 VYGQD-SETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIK-TLESHTRYVTCCTFSCDDSLLASGSNDKT  183 (222)
Q Consensus       106 ~~~~~-~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~-~~~~~~~~V~~~~~s~~~~~l~s~s~D~~  183 (222)
                        +.. ..........+..++++++++++++...++.|..+|.. ++... .+......+..+++++++++.++...++.
T Consensus        92 --g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~  168 (300)
T 2qc5_A           92 --GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNS  168 (300)
T ss_dssp             --SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred             --CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence              000 00111123567889999999888877778899999987 55432 23333456889999999997777666777


Q ss_pred             EEEEeC
Q psy16881        184 VTIWDM  189 (222)
Q Consensus       184 i~lwd~  189 (222)
                      |..+|.
T Consensus       169 i~~~~~  174 (300)
T 2qc5_A          169 IGRITN  174 (300)
T ss_dssp             EEEECT
T ss_pred             EEEECC
Confidence            888875

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.40  E-value=1e-05  Score=70.26  Aligned_cols=103  Identities=15%  Similarity=0.098  Sum_probs=79.0

Q ss_pred             CCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCCccccc
Q psy16881         37 PDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGR  116 (222)
Q Consensus        37 pdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (222)
                      |.+.++++...+++|.++|..+.+.+....                                                  
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~--------------------------------------------------  194 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLD--------------------------------------------------  194 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEE--------------------------------------------------
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEe--------------------------------------------------
Confidence            445577888889999999988765543321                                                  


Q ss_pred             cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCceEEEeccCCccEEEEEEc----CCCCEEEEee-CCCeEEEEeC
Q psy16881        117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP--SLTCIKTLESHTRYVTCCTFS----CDDSLLASGS-NDKTVTIWDM  189 (222)
Q Consensus       117 h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~--~~~~~~~~~~~~~~V~~~~~s----~~~~~l~s~s-~D~~i~lwd~  189 (222)
                      ....+..+.++|+|+++++++.|+.|.+||+.  +.+.+.++..... ...++|+    |+|++++++. .++++.++|.
T Consensus       195 ~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~  273 (567)
T 1qks_A          195 TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG  273 (567)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEET
T ss_pred             CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEEC
Confidence            11234578899999999999999999999995  7788887766443 5789999    6999888766 4589999996


Q ss_pred             C
Q psy16881        190 L  190 (222)
Q Consensus       190 ~  190 (222)
                      .
T Consensus       274 ~  274 (567)
T 1qks_A          274 E  274 (567)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.40  E-value=7.6e-06  Score=67.49  Aligned_cols=126  Identities=13%  Similarity=0.059  Sum_probs=91.3

Q ss_pred             EEcCCCCeEEEecC-----CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeec
Q psy16881         34 RFSPDTRLLATGGD-----DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYG  108 (222)
Q Consensus        34 ~~spdg~~l~tgs~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (222)
                      ...|+++.|.+...     +++|.+.|..+.+.+.+..                                     .    
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~-------------------------------------v----   77 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-------------------------------------G----   77 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-------------------------------------E----
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE-------------------------------------C----
Confidence            45799998777665     6899999987765543321                                     0    


Q ss_pred             cCCccccccCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceEEEeccCC-------ccEEEEEEcCC
Q psy16881        109 QDSETVGRHTSAVTSVRFNHKSSLLVSGS----------VDKTVKLWDVPSLTCIKTLESHT-------RYVTCCTFSCD  171 (222)
Q Consensus       109 ~~~~~~~~h~~~i~~l~~~~~~~~l~sg~----------~dg~I~iwd~~~~~~~~~~~~~~-------~~V~~~~~s~~  171 (222)
                             + ..+ . +.++|+|++++.++          .++.|.+||..+.+.+.++....       .....+.|+|+
T Consensus        78 -------G-~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD  147 (386)
T 3sjl_D           78 -------G-FLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD  147 (386)
T ss_dssp             -------C-SSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT
T ss_pred             -------C-CCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCC
Confidence                   0 112 3 88999999877765          36789999999999888774321       12456899999


Q ss_pred             CCEEEEeeC--CCeEEEEeCCC--------------------CeEEEeeCCCcEEEEeCCC
Q psy16881        172 DSLLASGSN--DKTVTIWDMLA--------------------TLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       172 ~~~l~s~s~--D~~i~lwd~~~--------------------~~l~s~~~d~~i~iwd~~~  210 (222)
                      |++++++..  ++.|.++|+.+                    ..+++.+.||++-+.++..
T Consensus       148 Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~  208 (386)
T 3sjl_D          148 GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGT  208 (386)
T ss_dssp             SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred             CCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCC
Confidence            999988763  68999999852                    2345677899998998863

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.40  E-value=0.00015  Score=56.41  Aligned_cols=174  Identities=9%  Similarity=0.017  Sum_probs=98.7

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeee-eeeeeEeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFST-FVKQIIPTRVG  105 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  105 (222)
                      ...+..++++++|+++++...++.|..|+.................   ..   +....... ...+. ....+...+. 
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~---~~---i~~~~~g~-l~v~~~~~~~i~~~d~-  127 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAP---YG---ITEGPNGD-IWFTEMNGNRIGRITD-  127 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCE---EE---EEECTTSC-EEEEETTTTEEEEECT-
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCc---ee---eEECCCCC-EEEEecCCceEEEECC-
Confidence            4568899999999988887778999999876221111111000000   00   00001110 11111 0111111110 


Q ss_pred             eeccCCc--cccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE-eccCCccEEEEEEcCCCCEEEEeeCCC
Q psy16881        106 VYGQDSE--TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKT-LESHTRYVTCCTFSCDDSLLASGSNDK  182 (222)
Q Consensus       106 ~~~~~~~--~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~-~~~~~~~V~~~~~s~~~~~l~s~s~D~  182 (222)
                        .....  ....+...+..+.++++++.+++...++.|..||. +++.... ...+...+..+++++++++.++...++
T Consensus       128 --~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~  204 (299)
T 2z2n_A          128 --DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGN  204 (299)
T ss_dssp             --TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred             --CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCc
Confidence              00000  01113356789999999988877777789999998 5654332 333445688999999999877776677


Q ss_pred             eEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        183 TVTIWDML-----------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       183 ~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      .|..||..                       ..+.++...++.|..||..+.
T Consensus       205 ~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~  256 (299)
T 2z2n_A          205 KIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNI  256 (299)
T ss_dssp             EEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTTE
T ss_pred             eEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCCCc
Confidence            88888762                       123333335677888887643

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.37  E-value=2.3e-05  Score=69.44  Aligned_cols=151  Identities=10%  Similarity=-0.021  Sum_probs=83.0

Q ss_pred             EEEEEcCCCCeEEEecCCCe-------------EEEEeCCCCce--EEeeccCCCcceeeccceecCccCCcccceeeee
Q psy16881         31 RCVRFSPDTRLLATGGDDET-------------VTVWRSDDLSL--IMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF   95 (222)
Q Consensus        31 ~~l~~spdg~~l~tgs~Dg~-------------i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (222)
                      ..++|+|||+.|+.++.|..             |++|++.+...  ........+. ..+..   ...+++.+..++...
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~-~~~~~---~~~SpDG~~l~~~~~  246 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP-TTFLQ---SDLSRDGKYLFVYIL  246 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT-TCEEE---EEECTTSCCEEEEEE
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC-EEEEE---EEECCCCCEEEEEEe
Confidence            57899999999999988876             99999986652  1111111110 00111   112233333333222


Q ss_pred             ee----eeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCce--EEEeccC--CccEE
Q psy16881         96 VK----QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS---VDKTVKLWDVPSLTC--IKTLESH--TRYVT  164 (222)
Q Consensus        96 ~~----~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~---~dg~I~iwd~~~~~~--~~~~~~~--~~~V~  164 (222)
                      ..    .+...+  ........+..+...+....+ +++++++...   .++.|.+||+.+++.  ...+..+  ...+.
T Consensus       247 ~~~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~  323 (695)
T 2bkl_A          247 RGWSENDVYWKR--PGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLL  323 (695)
T ss_dssp             ETTTEEEEEEEC--TTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEE
T ss_pred             CCCCceEEEEEc--CCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEE
Confidence            21    122111  111122233344455555555 4566444443   257899999976642  2333333  44678


Q ss_pred             EEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881        165 CCTFSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       165 ~~~~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      .++++ ++.++++...|+..+||.+
T Consensus       324 ~~~~~-~~~lv~~~~~dg~~~l~~~  347 (695)
T 2bkl_A          324 SVSIV-GGHLSLEYLKDATSEVRVA  347 (695)
T ss_dssp             EEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             EEEEE-CCEEEEEEEECCEEEEEEE
Confidence            88888 7778889999998888743

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.37  E-value=3e-05  Score=61.12  Aligned_cols=72  Identities=8%  Similarity=0.108  Sum_probs=57.0

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEE-EeeCCCeEEEEeCC
Q psy16881        119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA-SGSNDKTVTIWDML  190 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~-s~s~D~~i~lwd~~  190 (222)
                      ..+..++++++|+++++...++.|.+||.++++.+..+..+...+.+++|+++++.|+ +...++.|..|++.
T Consensus       226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            4567899999999888887889999999887776666666667799999999999554 45556778888764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.33  E-value=1.1e-05  Score=71.65  Aligned_cols=111  Identities=15%  Similarity=0.183  Sum_probs=72.4

Q ss_pred             cceEEEEEcCCCCeEE-----EecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee
Q psy16881         28 SNMRCVRFSPDTRLLA-----TGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT  102 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~-----tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (222)
                      ..+..++|||||++||     .|+.+.+|++||+++++.+....                                    
T Consensus       129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~------------------------------------  172 (693)
T 3iuj_A          129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL------------------------------------  172 (693)
T ss_dssp             CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE------------------------------------
T ss_pred             EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc------------------------------------
Confidence            3577889999999988     34444689999998765332110                                    


Q ss_pred             eeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCC-------------cEEEEeCCCCc----eEEEecc-CCccEE
Q psy16881        103 RVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDK-------------TVKLWDVPSLT----CIKTLES-HTRYVT  164 (222)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg-------------~I~iwd~~~~~----~~~~~~~-~~~~V~  164 (222)
                                  .  ......++|+ +++.|+.++.+.             .|++|++.+..    ++..... |...+.
T Consensus       173 ------------~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~  237 (693)
T 3iuj_A          173 ------------K--DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYV  237 (693)
T ss_dssp             ------------E--EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEE
T ss_pred             ------------C--CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEE
Confidence                        0  0001235688 888777777664             39999987653    3333333 445577


Q ss_pred             EEEEcCCCCEEEEee----CCCeEEEEeC
Q psy16881        165 CCTFSCDDSLLASGS----NDKTVTIWDM  189 (222)
Q Consensus       165 ~~~~s~~~~~l~s~s----~D~~i~lwd~  189 (222)
                      .+.++|+|++|+...    .+..|.++|+
T Consensus       238 ~~~~SpDg~~l~~~~~~~~~~~~i~~~d~  266 (693)
T 3iuj_A          238 GATVTEDDRFLLISAANSTSGNRLYVKDL  266 (693)
T ss_dssp             EEEECTTSCEEEEEEESSSSCCEEEEEET
T ss_pred             EEEEcCCCCEEEEEEccCCCCcEEEEEEC
Confidence            899999999886433    2248889986

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.29  E-value=6.9e-05  Score=60.17  Aligned_cols=111  Identities=6%  Similarity=-0.016  Sum_probs=73.5

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      +.....+.+. ++++.++...+++|.+||..+++.+.+..                                        
T Consensus        43 g~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~----------------------------------------   81 (328)
T 3dsm_A           43 GDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT----------------------------------------   81 (328)
T ss_dssp             BSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE----------------------------------------
T ss_pred             CccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC----------------------------------------
Confidence            4456778774 45666777778999999988665443220                                        


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCC-----ccEEEEEEcCCCCEEEEee--
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT-----RYVTCCTFSCDDSLLASGS--  179 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-----~~V~~~~~s~~~~~l~s~s--  179 (222)
                                .......++++++++.+++...++.|.+||..+++....+....     .....+++  ++..|+.+.  
T Consensus        82 ----------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~  149 (328)
T 3dsm_A           82 ----------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWS  149 (328)
T ss_dssp             ----------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECT
T ss_pred             ----------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCC
Confidence                      11234667887877544444388999999999988877665433     13456666  344455444  


Q ss_pred             CCCeEEEEeCC
Q psy16881        180 NDKTVTIWDML  190 (222)
Q Consensus       180 ~D~~i~lwd~~  190 (222)
                      .++.|.++|+.
T Consensus       150 ~~~~v~viD~~  160 (328)
T 3dsm_A          150 YQNRILKIDTE  160 (328)
T ss_dssp             TCCEEEEEETT
T ss_pred             CCCEEEEEECC
Confidence            48899999974

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.29  E-value=1.2e-05  Score=65.39  Aligned_cols=107  Identities=14%  Similarity=0.085  Sum_probs=67.7

Q ss_pred             ceEEEEEcCCCCeEEEecCC-----CeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         29 NMRCVRFSPDTRLLATGGDD-----ETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        29 ~v~~l~~spdg~~l~tgs~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      .+..++|+|||++|+.++.+     +.|++||+.++......                                      
T Consensus       239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~--------------------------------------  280 (396)
T 3c5m_A          239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM--------------------------------------  280 (396)
T ss_dssp             EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE--------------------------------------
T ss_pred             cccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee--------------------------------------
Confidence            57788999999988776554     45899987654321100                                      


Q ss_pred             eeeeccCCccccccCCCEEEEEEcC-CCCEEEEEe----------------CCCcEEEEeCCCCceEEEeccCCc-----
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNH-KSSLLVSGS----------------VDKTVKLWDVPSLTCIKTLESHTR-----  161 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~sg~----------------~dg~I~iwd~~~~~~~~~~~~~~~-----  161 (222)
                        .          .. ... +.|++ +|+.++.++                .++.|.+||+.+++.. .+..+..     
T Consensus       281 --~----------~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~  345 (396)
T 3c5m_A          281 --V----------MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVL  345 (396)
T ss_dssp             --E----------CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCB
T ss_pred             --e----------CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccc
Confidence              0          00 012 67888 888777654                3478999999876543 3333333     


Q ss_pred             ------cEEEEEEcCCCCEEEEeeC-CCeEEEEe
Q psy16881        162 ------YVTCCTFSCDDSLLASGSN-DKTVTIWD  188 (222)
Q Consensus       162 ------~V~~~~~s~~~~~l~s~s~-D~~i~lwd  188 (222)
                            .+..+.|+|+|+.|+.++. ++...+|-
T Consensus       346 ~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~  379 (396)
T 3c5m_A          346 DGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI  379 (396)
T ss_dssp             TTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred             cccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence                  2456789999998887664 44444443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.29  E-value=3.6e-05  Score=63.45  Aligned_cols=137  Identities=12%  Similarity=0.045  Sum_probs=84.2

Q ss_pred             EEEcCCCCeEEEec----------CCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee
Q psy16881         33 VRFSPDTRLLATGG----------DDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT  102 (222)
Q Consensus        33 l~~spdg~~l~tgs----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (222)
                      ++++|||++|.+++          .++.|.+||..+.+...+..-..                                 
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~---------------------------------  129 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD---------------------------------  129 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT---------------------------------
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCC---------------------------------
Confidence            99999999887765          36789999998766554431000                                 


Q ss_pred             eeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceEEEeccCCc-cE------EEEEEcCCCC
Q psy16881        103 RVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV--DKTVKLWDVPSLTCIKTLESHTR-YV------TCCTFSCDDS  173 (222)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~--dg~I~iwd~~~~~~~~~~~~~~~-~V------~~~~~s~~~~  173 (222)
                           +.  +.  ........+.++|+|++++.+..  ++.|.++|+.+++.+.++..... .+      .-++.+++|+
T Consensus       130 -----g~--r~--~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~  200 (386)
T 3sjl_D          130 -----AP--RF--LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGS  200 (386)
T ss_dssp             -----CC--CC--CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSC
T ss_pred             -----cc--cc--ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCC
Confidence                 00  00  00011234789999998888864  68999999999998887753211 01      1135567777


Q ss_pred             EEEEeeCC-CeE-----EEEeCC-------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        174 LLASGSND-KTV-----TIWDML-------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       174 ~l~s~s~D-~~i-----~lwd~~-------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      +++....+ +++     .+++..             ...++-.+.++.+++.|+.+.
T Consensus       201 ~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~  257 (386)
T 3sjl_D          201 LAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG  257 (386)
T ss_dssp             EEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred             EEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCC
Confidence            66666544 454     122211             112334556788999998754

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.27  E-value=0.00012  Score=57.70  Aligned_cols=115  Identities=10%  Similarity=0.101  Sum_probs=65.6

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ...+.+++++|+|+++++.  ++.|.+||.+++.........                                      
T Consensus        53 ~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~--------------------------------------   92 (297)
T 3g4e_A           53 DAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVD--------------------------------------   92 (297)
T ss_dssp             SSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECC--------------------------------------
T ss_pred             CCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecC--------------------------------------
Confidence            4568888899998865543  567888887654322110000                                      


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCC---------CcEEEEeCCC-CceEEEeccCCccEEEEEEcCCCCEEE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVD---------KTVKLWDVPS-LTCIKTLESHTRYVTCCTFSCDDSLLA  176 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~d---------g~I~iwd~~~-~~~~~~~~~~~~~V~~~~~s~~~~~l~  176 (222)
                         .    ......++.+.++++|+++++....         ..-+||.+.. ++. ..+..+-.....++|+|+++.|+
T Consensus        93 ---~----~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~~~~~pngi~~spdg~~ly  164 (297)
T 3g4e_A           93 ---N----DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFDQVDISNGLDWSLDHKIFY  164 (297)
T ss_dssp             ---T----TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEEEESBEEEEEECTTSCEEE
T ss_pred             ---C----CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-EEEeeccccccceEEcCCCCEEE
Confidence               0    0012235678888888866654221         2345554432 332 22222233467889999998664


Q ss_pred             -EeeCCCeEEEEeC
Q psy16881        177 -SGSNDKTVTIWDM  189 (222)
Q Consensus       177 -s~s~D~~i~lwd~  189 (222)
                       +.+.++.|..||+
T Consensus       165 v~~~~~~~i~~~~~  178 (297)
T 3g4e_A          165 YIDSLSYSVDAFDY  178 (297)
T ss_dssp             EEEGGGTEEEEEEE
T ss_pred             EecCCCCcEEEEec
Confidence             4556678888874

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.26  E-value=6.7e-05  Score=59.23  Aligned_cols=109  Identities=12%  Similarity=0.083  Sum_probs=75.5

Q ss_pred             cceEEEEEcCCCCeE-EEecCCCeEEEEeCC--CCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         28 SNMRCVRFSPDTRLL-ATGGDDETVTVWRSD--DLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        28 ~~v~~l~~spdg~~l-~tgs~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      ...+.++|+||++.| ++.+.+++|.+|+++  ++......                                 ..    
T Consensus       149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~---------------------------------~~----  191 (297)
T 3g4e_A          149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRR---------------------------------SV----  191 (297)
T ss_dssp             SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEE---------------------------------EE----
T ss_pred             ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcE---------------------------------EE----
Confidence            345678999999866 555667899999863  22211000                                 00    


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEc-CCCCEEEEeeC
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS-CDDSLLASGSN  180 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s-~~~~~l~s~s~  180 (222)
                      .       .+..+......++++++|++.++....+.|.+||..+++.+..+..+...+++++|. |+++.|+.++.
T Consensus       192 ~-------~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          192 Y-------KLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             E-------ECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             E-------ECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            0       000112345678899999988877778889999998899888888777789999998 88877766554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.25  E-value=0.00045  Score=54.23  Aligned_cols=72  Identities=10%  Similarity=0.133  Sum_probs=52.7

Q ss_pred             CCEEEEEEc----CCCCEEEEE-eCCCcEEEEeCC-CCc-----eEEEeccCC-ccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881        119 SAVTSVRFN----HKSSLLVSG-SVDKTVKLWDVP-SLT-----CIKTLESHT-RYVTCCTFSCDDSLLASGSNDKTVTI  186 (222)
Q Consensus       119 ~~i~~l~~~----~~~~~l~sg-~~dg~I~iwd~~-~~~-----~~~~~~~~~-~~V~~~~~s~~~~~l~s~s~D~~i~l  186 (222)
                      .....++++    ++++.++.+ ..++.|.+||.. +++     ....+..+. ..+..++++++|+++++...++.|.+
T Consensus       172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~  251 (314)
T 1pjx_A          172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence            446788899    988755544 567899999976 443     223344443 56788999999999888878889999


Q ss_pred             EeCC
Q psy16881        187 WDML  190 (222)
Q Consensus       187 wd~~  190 (222)
                      ||..
T Consensus       252 ~d~~  255 (314)
T 1pjx_A          252 FGPD  255 (314)
T ss_dssp             ECTT
T ss_pred             EcCC
Confidence            9874

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.25  E-value=6.6e-07  Score=73.47  Aligned_cols=156  Identities=17%  Similarity=0.094  Sum_probs=74.0

Q ss_pred             CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceee-eeeeeeEeeeeeeeccCCccccc
Q psy16881         38 DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFS-TFVKQIIPTRVGVYGQDSETVGR  116 (222)
Q Consensus        38 dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  116 (222)
                      ++.+|++++.||.|+.||..+++............        .+..... ..... .....+..++.. .+.....+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s--------~p~~~~g-~~~v~~s~dg~l~a~d~~-tG~~~w~~~~   77 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQ--------VPTHVEE-PAFLPDPNDGSLYTLGSK-NNEGLTKLPF   77 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCC--------CC------CCEEECTTTCCEEEC------CCSEECSC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCcee--------cceEcCC-CEEEEeCCCCEEEEEECC-CCceeeeeec
Confidence            57788999999999999999998887664311000        0100000 01111 111112211110 0111000100


Q ss_pred             c------CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        117 H------TSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       117 h------~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      +      ..++    + ..+..+++++.|+.|..||.++++.+..+..+.    ...++|++..|++++.|+.+..||..
T Consensus        78 ~~~~~~~~sp~----~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~  148 (369)
T 2hz6_A           78 TIPELVQASPC----R-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTK  148 (369)
T ss_dssp             CHHHHHTTCSC----C------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSS
T ss_pred             cCccccccCce----E-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECC
Confidence            0      1111    1 134567888889999999999998877665543    23456688888899989999999863


Q ss_pred             -------------------C-----CeEEEeeCCCcEEEEeCC-CCc
Q psy16881        191 -------------------A-----TLLASGSNDKTVTIWDMR-GNL  212 (222)
Q Consensus       191 -------------------~-----~~l~s~~~d~~i~iwd~~-~~~  212 (222)
                                         .     ..++.++.|+.++.||.+ ++.
T Consensus       149 tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          149 TRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             SSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred             CCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence                               1     356777889999999986 444

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.22  E-value=0.00063  Score=52.81  Aligned_cols=152  Identities=10%  Similarity=0.011  Sum_probs=85.0

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee-eeeeEeeeeee
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF-VKQIIPTRVGV  106 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  106 (222)
                      ..+..++++++|++.++...++.|..|+.. +... .......... ...   +....... ...... ...+...+.. 
T Consensus        62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~-~~~---i~~~~~g~-l~v~~~~~~~i~~~~~~-  133 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSG-PYG---ITEGLNGD-IWFTQLNGDRIGKLTAD-  133 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCC-EEE---EEECSTTC-EEEEETTTTEEEEECTT-
T ss_pred             CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCC-Ccc---ceECCCCC-EEEEccCCCeEEEECCC-
Confidence            568889999999988887778999999887 4432 1111100000 000   00000111 111111 1111111100 


Q ss_pred             eccCC-ccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE-EeccCCccEEEEEEcCCCCEEEEeeCCCeE
Q psy16881        107 YGQDS-ETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIK-TLESHTRYVTCCTFSCDDSLLASGSNDKTV  184 (222)
Q Consensus       107 ~~~~~-~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~-~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i  184 (222)
                       +... ..+......+..+.++++++.+++...++.|..+|. +++... ....+...+..++++++|++.++....+.|
T Consensus       134 -g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i  211 (300)
T 2qc5_A          134 -GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKI  211 (300)
T ss_dssp             -SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred             -CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEE
Confidence             0000 001112356788999999997776666788999998 454433 222334568899999999887777667778


Q ss_pred             EEEeC
Q psy16881        185 TIWDM  189 (222)
Q Consensus       185 ~lwd~  189 (222)
                      ..||.
T Consensus       212 ~~~~~  216 (300)
T 2qc5_A          212 GRITT  216 (300)
T ss_dssp             EEECT
T ss_pred             EEEcC
Confidence            88876

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.17  E-value=0.00027  Score=57.01  Aligned_cols=112  Identities=8%  Similarity=0.046  Sum_probs=70.5

Q ss_pred             cceEEEEEcCCCCeEEEecC-----CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee
Q psy16881         28 SNMRCVRFSPDTRLLATGGD-----DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT  102 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (222)
                      ..+..++|+++|+++++-..     +++|.+||+++++....+....                                 
T Consensus        67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~---------------------------------  113 (343)
T 2qe8_A           67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPP---------------------------------  113 (343)
T ss_dssp             SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCT---------------------------------
T ss_pred             eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECCh---------------------------------
Confidence            56889999999987665433     5789999988766443321000                                 


Q ss_pred             eeeeeccCCccccccCCCEEEEEEcCCCCEE-EEEe---CCCcEEEEeCCCCceEEEeccCC------------------
Q psy16881        103 RVGVYGQDSETVGRHTSAVTSVRFNHKSSLL-VSGS---VDKTVKLWDVPSLTCIKTLESHT------------------  160 (222)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~sg~---~dg~I~iwd~~~~~~~~~~~~~~------------------  160 (222)
                                ....+...+..+++++++..+ ++..   .++.|.+||..+++....+.+|.                  
T Consensus       114 ----------~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~  183 (343)
T 2qe8_A          114 ----------PITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQI  183 (343)
T ss_dssp             ----------TTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBE
T ss_pred             ----------hhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEe
Confidence                      000122334567787655444 4444   57788999988776555443321                  


Q ss_pred             -----------ccEEEEEEcCCCCEEEEeeCCC
Q psy16881        161 -----------RYVTCCTFSCDDSLLASGSNDK  182 (222)
Q Consensus       161 -----------~~V~~~~~s~~~~~l~s~s~D~  182 (222)
                                 ..+..++|+|+++.|+.+..++
T Consensus       184 ~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~  216 (343)
T 2qe8_A          184 GQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS  216 (343)
T ss_dssp             ECTTSCEECCCCCEEEEEECTTSCEEEEEESSC
T ss_pred             ccCCCceeceecccceeEeccCCCEEEEEeCCC
Confidence                       1257799999999888776554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.16  E-value=0.00016  Score=57.26  Aligned_cols=115  Identities=11%  Similarity=0.086  Sum_probs=70.9

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ...+..++++++|+++++...++.|.+|+.+ +....-..                                       .
T Consensus        85 ~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~---------------------------------------~  124 (305)
T 3dr2_A           85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVG---------------------------------------R  124 (305)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEC---------------------------------------E
T ss_pred             CCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEe---------------------------------------c
Confidence            5567889999999977776666888888764 32111000                                       0


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEE----EeC-------------CCcEEEEeCCCCceEEEeccCCccEEEEEEc
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVS----GSV-------------DKTVKLWDVPSLTCIKTLESHTRYVTCCTFS  169 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~s----g~~-------------dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s  169 (222)
                      ..      ......+..+.++++|+++++    |..             .+.|..+|..+++.....  .......++|+
T Consensus       125 ~~------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~s  196 (305)
T 3dr2_A          125 YA------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFS  196 (305)
T ss_dssp             ET------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEEC
T ss_pred             cC------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEc
Confidence            00      000122455778888887776    332             245777776555543222  23346789999


Q ss_pred             CCCCEEEEeeCC------CeEEEEeC
Q psy16881        170 CDDSLLASGSND------KTVTIWDM  189 (222)
Q Consensus       170 ~~~~~l~s~s~D------~~i~lwd~  189 (222)
                      |+++.|+.+...      +.|.+||+
T Consensus       197 pdg~~lyv~~~~~~~~~~~~i~~~~~  222 (305)
T 3dr2_A          197 PDEQTLYVSQTPEQGHGSVEITAFAW  222 (305)
T ss_dssp             TTSSEEEEEECCC---CCCEEEEEEE
T ss_pred             CCCCEEEEEecCCcCCCCCEEEEEEe
Confidence            999977776554      67888885

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.09  E-value=0.00065  Score=55.70  Aligned_cols=70  Identities=16%  Similarity=0.011  Sum_probs=55.3

Q ss_pred             EEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCC-EEEEee-CCCeEEEEeC
Q psy16881        122 TSVRFNHKSSLLVSGSV----------DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS-LLASGS-NDKTVTIWDM  189 (222)
Q Consensus       122 ~~l~~~~~~~~l~sg~~----------dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~-~l~s~s-~D~~i~lwd~  189 (222)
                      ..+.++++++.++.+..          .+.|.++|+.+++.+..+.... ....+.|+++|+ +++++. .++.|.++|+
T Consensus       270 ~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~  348 (373)
T 2mad_H          270 QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             EeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence            34778999887777643          3579999999999988886533 478999999999 787777 4899999998


Q ss_pred             CCC
Q psy16881        190 LAT  192 (222)
Q Consensus       190 ~~~  192 (222)
                      .+.
T Consensus       349 ~t~  351 (373)
T 2mad_H          349 GAG  351 (373)
T ss_pred             CCC
Confidence            653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.07  E-value=0.00034  Score=57.41  Aligned_cols=68  Identities=15%  Similarity=0.018  Sum_probs=53.1

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceEEEeccC-------CccEEEEEEcCCCCEEEEeeC--CCe
Q psy16881        123 SVRFNHKSSLLVSGS----------VDKTVKLWDVPSLTCIKTLESH-------TRYVTCCTFSCDDSLLASGSN--DKT  183 (222)
Q Consensus       123 ~l~~~~~~~~l~sg~----------~dg~I~iwd~~~~~~~~~~~~~-------~~~V~~~~~s~~~~~l~s~s~--D~~  183 (222)
                      .+.++|++++++.+.          .++.|.+||..+.+.+.++...       ......+.|+|+|++|+++..  +..
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            588999999888876          3678999999988877766432       123457899999999998874  478


Q ss_pred             EEEEeCCC
Q psy16881        184 VTIWDMLA  191 (222)
Q Consensus       184 i~lwd~~~  191 (222)
                      |.++| .+
T Consensus       150 v~viD-~t  156 (373)
T 2mad_H          150 VGLVV-QG  156 (373)
T ss_pred             EEEEE-CC
Confidence            99999 64

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.04  E-value=0.00067  Score=56.28  Aligned_cols=152  Identities=11%  Similarity=0.001  Sum_probs=83.3

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee--eeEeeeee
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK--QIIPTRVG  105 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  105 (222)
                      .....|+|+++|+++++...++.|+.||.+++......... ....       +................  .+...+. 
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-------ia~~~~g~~l~~~d~~~~~~I~~~d~-  201 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-------PAVTKDKQRVYSIGWEGTHTVYVYMK-  201 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-------CEECTTSSEEEEEBSSTTCEEEEEEG-
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-------eeEecCCCcEEEEecCCCceEEEEEc-
Confidence            34778999999998888888899999999876554332211 0000       00111111111111101  1111110 


Q ss_pred             eeccCC-ccc----cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE----eccCCccE-E-EEEEcCC-CC
Q psy16881        106 VYGQDS-ETV----GRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKT----LESHTRYV-T-CCTFSCD-DS  173 (222)
Q Consensus       106 ~~~~~~-~~~----~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~----~~~~~~~V-~-~~~~s~~-~~  173 (222)
                       ..... ..+    ......+.+++++|++..|+.+..++.|..||..++.....    ..++.... . .++|+|+ +.
T Consensus       202 -~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~  280 (409)
T 3hrp_A          202 -ASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN  280 (409)
T ss_dssp             -GGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred             -CCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE
Confidence             00000 011    11234567789999666666677788999999886653222    22222222 2 8999995 66


Q ss_pred             EEEEeeCCCeEEEEeC
Q psy16881        174 LLASGSNDKTVTIWDM  189 (222)
Q Consensus       174 ~l~s~s~D~~i~lwd~  189 (222)
                      ++++-...+.|..|+.
T Consensus       281 lyv~d~~~~~I~~~~~  296 (409)
T 3hrp_A          281 FYMSDQNLSSVYKITP  296 (409)
T ss_dssp             EEEEETTTTEEEEECT
T ss_pred             EEEEeCCCCEEEEEec
Confidence            6666667788888875

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.99  E-value=0.00056  Score=60.95  Aligned_cols=71  Identities=14%  Similarity=0.050  Sum_probs=46.4

Q ss_pred             ccCCCEEEEEEcCCCCEEEEEeCC----CcEEEEeCCCC--ceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEe
Q psy16881        116 RHTSAVTSVRFNHKSSLLVSGSVD----KTVKLWDVPSL--TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD  188 (222)
Q Consensus       116 ~h~~~i~~l~~~~~~~~l~sg~~d----g~I~iwd~~~~--~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd  188 (222)
                      .+...+... +.++|+.|+..+.+    +.|.+||+.++  +....+..+...+..++++ ++.++++...|+..+||.
T Consensus       314 ~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~  390 (741)
T 1yr2_A          314 PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLA  390 (741)
T ss_dssp             CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEE
T ss_pred             CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence            344444444 34788877777653    44999998874  3333344445557777887 667788888898877774

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.98  E-value=0.0023  Score=51.15  Aligned_cols=156  Identities=8%  Similarity=-0.043  Sum_probs=84.6

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccC-CCcceeeccceecCccCCcccceeeeeee-----eeE
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDR-GHTQGRIEGWGRVPACPLCRTRVFSTFVK-----QII  100 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  100 (222)
                      ...+.+++++|+|+++++. . ..|.+||.+++......... ......+..   +....... ........     ...
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~---i~~d~~G~-l~v~~~~~~~~~~~~~  162 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSND---GRMHPSGA-LWIGTMGRKAETGAGS  162 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEE---EEECTTSC-EEEEEEETTCCTTCEE
T ss_pred             CCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCC---EEECCCCC-EEEEeCCCcCCCCceE
Confidence            4568899999999987765 3 45899998776543221111 000011111   11111111 11111100     011


Q ss_pred             eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCC--CC-c-----eEEEeccCCccEEEEEEcCC
Q psy16881        101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSG-SVDKTVKLWDVP--SL-T-----CIKTLESHTRYVTCCTFSCD  171 (222)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg-~~dg~I~iwd~~--~~-~-----~~~~~~~~~~~V~~~~~s~~  171 (222)
                      .+...  ......+..+......++|+++++.++.+ +.++.|.+||+.  ++ +     .+..+......+..++++++
T Consensus       163 l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~  240 (326)
T 2ghs_A          163 IYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE  240 (326)
T ss_dssp             EEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT
T ss_pred             EEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC
Confidence            11111  11111111122346789999999866544 557889999975  45 2     22333333456788999999


Q ss_pred             CCEEEEeeCCCeEEEEeCC
Q psy16881        172 DSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       172 ~~~l~s~s~D~~i~lwd~~  190 (222)
                      |++.++...++.|..||..
T Consensus       241 G~lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          241 GHIWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             SCEEEEEETTTEEEEECTT
T ss_pred             CCEEEEEeCCCEEEEECCC
Confidence            9988877677889999874

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.95  E-value=0.0013  Score=52.61  Aligned_cols=60  Identities=18%  Similarity=0.155  Sum_probs=46.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEc-CCCCEEEEeeCC
Q psy16881        121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS-CDDSLLASGSND  181 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s-~~~~~l~s~s~D  181 (222)
                      ...+.++++|+++++...++.|.+||. +++.+..+..+...+.+++|+ ++++.|+.++..
T Consensus       232 p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          232 MDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            456888899987777766788999998 567777777777779999998 888777655433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.89  E-value=0.00044  Score=57.78  Aligned_cols=137  Identities=12%  Similarity=0.015  Sum_probs=83.8

Q ss_pred             EEEEcCCCCeEEEec----------CCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEe
Q psy16881         32 CVRFSPDTRLLATGG----------DDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIP  101 (222)
Q Consensus        32 ~l~~spdg~~l~tgs----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (222)
                      .++++|||++|+++.          .++.|.++|..+.+.+.+..-.+.  .                            
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~--~----------------------------  171 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDA--P----------------------------  171 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC--C----------------------------
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCc--c----------------------------
Confidence            799999999888776          367899999887665544310000  0                            


Q ss_pred             eeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceEEEeccCCc-c------EEEEEEcCCC
Q psy16881        102 TRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV--DKTVKLWDVPSLTCIKTLESHTR-Y------VTCCTFSCDD  172 (222)
Q Consensus       102 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~--dg~I~iwd~~~~~~~~~~~~~~~-~------V~~~~~s~~~  172 (222)
                                +..  .......+.++|+|++++.+..  ++.|.+.|+.+++.+.++..... .      -..+.++++|
T Consensus       172 ----------r~~--~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG  239 (426)
T 3c75_H          172 ----------RFL--VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDG  239 (426)
T ss_dssp             ----------CCC--BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred             ----------ccc--cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCC
Confidence                      000  0001123678999998888874  57899999999988877754221 0      1124566777


Q ss_pred             CEEEEeeCCCeEE-----EEeCC-------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        173 SLLASGSNDKTVT-----IWDML-------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       173 ~~l~s~s~D~~i~-----lwd~~-------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      ++++....++++.     ++++.             ...++..+..+.+.+.|+.+
T Consensus       240 ~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~  295 (426)
T 3c75_H          240 SLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTA  295 (426)
T ss_dssp             SEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECS
T ss_pred             CEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccC
Confidence            7666555555544     23321             22334445567788888753

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.85  E-value=0.00086  Score=59.47  Aligned_cols=24  Identities=8%  Similarity=0.081  Sum_probs=20.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEE
Q psy16881        132 LLVSGSVDKTVKLWDVPSLTCIKT  155 (222)
Q Consensus       132 ~l~sg~~dg~I~iwd~~~~~~~~~  155 (222)
                      .++.++.+|.+.++|.++++.+..
T Consensus       321 ~v~~~~~~G~l~~lD~~tG~~l~~  344 (689)
T 1yiq_A          321 VLMQAPKNGFFYVIDRATGELLSA  344 (689)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEE
T ss_pred             EEEEECCCCeEEEEECCCCCEecc
Confidence            688899999999999999988743

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.81  E-value=0.00089  Score=59.25  Aligned_cols=85  Identities=11%  Similarity=0.189  Sum_probs=62.1

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEeccCC-----------ccE------------------------EEEEEcCCCCEE
Q psy16881        131 SLLVSGSVDKTVKLWDVPSLTCIKTLESHT-----------RYV------------------------TCCTFSCDDSLL  175 (222)
Q Consensus       131 ~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-----------~~V------------------------~~~~~s~~~~~l  175 (222)
                      +.++.++.+|.|.++|.++++.+..+....           ..+                        ..++++|+..++
T Consensus       328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~  407 (677)
T 1kb0_A          328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (677)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence            578899999999999999998876554211           111                        146788988888


Q ss_pred             EEeeCC-------------------------------------------CeEEEEeCC----------------------
Q psy16881        176 ASGSND-------------------------------------------KTVTIWDML----------------------  190 (222)
Q Consensus       176 ~s~s~D-------------------------------------------~~i~lwd~~----------------------  190 (222)
                      ++...+                                           +.|..||+.                      
T Consensus       408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~  487 (677)
T 1kb0_A          408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTA  487 (677)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEET
T ss_pred             EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeC
Confidence            875432                                           678889874                      


Q ss_pred             CCeEEEeeCCCcEEEEeCC-CCcccc
Q psy16881        191 ATLLASGSNDKTVTIWDMR-GNLSVD  215 (222)
Q Consensus       191 ~~~l~s~~~d~~i~iwd~~-~~~~~~  215 (222)
                      ..+++.++.|+.+++||++ ++....
T Consensus       488 g~~v~~g~~dg~l~a~D~~tG~~lw~  513 (677)
T 1kb0_A          488 GNVVFQGTADGRLVAYHAATGEKLWE  513 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCcEEEEECCCCceeee
Confidence            2467778899999999997 665543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.79  E-value=0.00064  Score=56.82  Aligned_cols=87  Identities=15%  Similarity=0.122  Sum_probs=64.3

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceEEEeccC-------CccEEEEEEcCCCCEEEEeeC--CCe
Q psy16881        123 SVRFNHKSSLLVSGS----------VDKTVKLWDVPSLTCIKTLESH-------TRYVTCCTFSCDDSLLASGSN--DKT  183 (222)
Q Consensus       123 ~l~~~~~~~~l~sg~----------~dg~I~iwd~~~~~~~~~~~~~-------~~~V~~~~~s~~~~~l~s~s~--D~~  183 (222)
                      .+.++|+++.++.+.          .++.|.++|..+++.+.++...       ......+.|+|+|++++++..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            588999999877775          3678999999999988776432       112346789999999998764  578


Q ss_pred             EEEEeCCCC--------------------eEEEeeCCCcEEEEeCC
Q psy16881        184 VTIWDMLAT--------------------LLASGSNDKTVTIWDMR  209 (222)
Q Consensus       184 i~lwd~~~~--------------------~l~s~~~d~~i~iwd~~  209 (222)
                      |.+.|+.+.                    .+++.+.|+++.+.++.
T Consensus       202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~  247 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFA  247 (426)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECC
T ss_pred             EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECC
Confidence            999998532                    23455667777777774

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.78  E-value=0.0037  Score=51.75  Aligned_cols=65  Identities=9%  Similarity=-0.012  Sum_probs=47.9

Q ss_pred             EEEEcCC-CCEEEEEeCCCcEEEEeCCCCceEEEeccCC---------------ccEEEEEEcCCCCEEEEee-CCCeEE
Q psy16881        123 SVRFNHK-SSLLVSGSVDKTVKLWDVPSLTCIKTLESHT---------------RYVTCCTFSCDDSLLASGS-NDKTVT  185 (222)
Q Consensus       123 ~l~~~~~-~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~---------------~~V~~~~~s~~~~~l~s~s-~D~~i~  185 (222)
                      .++|+|+ +.++++-..++.|+.||....  +..+.++.               .....++++++|+++++-+ .+..|+
T Consensus       271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~  348 (409)
T 3hrp_A          271 YLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLR  348 (409)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEE
T ss_pred             cEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEE
Confidence            8999996 455666667788999987643  33333322               3478899999999888877 888999


Q ss_pred             EEeC
Q psy16881        186 IWDM  189 (222)
Q Consensus       186 lwd~  189 (222)
                      .||+
T Consensus       349 ~~~~  352 (409)
T 3hrp_A          349 KLDI  352 (409)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9995

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.60  E-value=0.0018  Score=51.09  Aligned_cols=60  Identities=15%  Similarity=0.080  Sum_probs=42.5

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        122 TSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       122 ~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                      ..+.++++|++.++ ..+ .|.+||. +++.+..+..+. .+..++|+++++.|..++.++..+
T Consensus       242 dgi~~d~~G~lwv~-~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          242 DGFCVDRGGWLWSS-SGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             CSEEECTTSCEEEC-CSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             CeEEECCCCCEEEe-cCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            34678889985444 444 4899997 567776666554 478899999998888877765433

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.58  E-value=0.0025  Score=51.22  Aligned_cols=74  Identities=8%  Similarity=0.099  Sum_probs=52.7

Q ss_pred             cCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCceEEEeccC------CccEEEEEEcCCCCEE-EEee---CC
Q psy16881        117 HTSAVTSVRFNHKSSLLVSGSV-----DKTVKLWDVPSLTCIKTLESH------TRYVTCCTFSCDDSLL-ASGS---ND  181 (222)
Q Consensus       117 h~~~i~~l~~~~~~~~l~sg~~-----dg~I~iwd~~~~~~~~~~~~~------~~~V~~~~~s~~~~~l-~s~s---~D  181 (222)
                      |...+..++++++++.+++-..     ++.|.+||+++++.+..+..+      ...+..+++++++..+ ++-+   .+
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~  144 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK  144 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence            4567889999999876555433     578999999988876665432      2345789999865444 5554   67


Q ss_pred             CeEEEEeCC
Q psy16881        182 KTVTIWDML  190 (222)
Q Consensus       182 ~~i~lwd~~  190 (222)
                      +.|.+||+.
T Consensus       145 ~~i~v~d~~  153 (343)
T 2qe8_A          145 AALIRVDLQ  153 (343)
T ss_dssp             CEEEEEETT
T ss_pred             CeEEEEECC
Confidence            899999974

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.54  E-value=0.0028  Score=49.24  Aligned_cols=151  Identities=10%  Similarity=0.065  Sum_probs=77.6

Q ss_pred             ccceEEEEEcCCCCeEEEecCCC--eEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee--eeeeEee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDE--TVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF--VKQIIPT  102 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  102 (222)
                      .+..+-|.|+ ++.+..+++.+|  +|+.+|+++++............+  .+..   .  . ....+...  ...+...
T Consensus        42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~Fg--eGit---~--~-g~~ly~ltw~~~~v~v~  112 (262)
T 3nol_A           42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFG--EGIS---D--W-KDKIVGLTWKNGLGFVW  112 (262)
T ss_dssp             TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCE--EEEE---E--E-TTEEEEEESSSSEEEEE
T ss_pred             CcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccce--eEEE---E--e-CCEEEEEEeeCCEEEEE
Confidence            3455889998 777777888876  999999999887765532110000  0000   0  0 00111000  0000000


Q ss_pred             eeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccC--C---ccEEEEEEcCCCCEEEE
Q psy16881        103 RVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESH--T---RYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~--~---~~V~~~~~s~~~~~l~s  177 (222)
                      +    ......+..-...-....+.++++.++....++.|.++|..+++.+..+...  .   ..++.+.+. +|.+.+.
T Consensus       113 D----~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan  187 (262)
T 3nol_A          113 N----IRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFAN  187 (262)
T ss_dssp             E----TTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred             E----CccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEE
Confidence            0    0111111111111122344566777888777777888888888777665432  1   223456665 5654444


Q ss_pred             eeCCCeEEEEeCCC
Q psy16881        178 GSNDKTVTIWDMLA  191 (222)
Q Consensus       178 ~s~D~~i~lwd~~~  191 (222)
                      ...+..|.+.|..+
T Consensus       188 ~w~~~~I~vIDp~t  201 (262)
T 3nol_A          188 VWQTNKIVRIDPET  201 (262)
T ss_dssp             ETTSSEEEEECTTT
T ss_pred             EccCCeEEEEECCC
Confidence            44566777777643

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.46  E-value=0.0011  Score=54.20  Aligned_cols=88  Identities=14%  Similarity=0.005  Sum_probs=64.6

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceEEEeccC--C-----ccEEEEEEcCCCCEEEEeeC--CCe
Q psy16881        123 SVRFNHKSSLLVSGS----------VDKTVKLWDVPSLTCIKTLESH--T-----RYVTCCTFSCDDSLLASGSN--DKT  183 (222)
Q Consensus       123 ~l~~~~~~~~l~sg~----------~dg~I~iwd~~~~~~~~~~~~~--~-----~~V~~~~~s~~~~~l~s~s~--D~~  183 (222)
                      .+.++|++++++.+.          .++.|.+||+.+++.+.++..+  .     .....+.++|+|++++++..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            588999999888876          3688999999999998887543  1     22456899999999998764  457


Q ss_pred             EEE--EeCCC-----------------CeEEEeeCCCcEEEEeCCC
Q psy16881        184 VTI--WDMLA-----------------TLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       184 i~l--wd~~~-----------------~~l~s~~~d~~i~iwd~~~  210 (222)
                      +.+  +|+.+                 ..+++.+.|+++.+.|+..
T Consensus       149 v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~  194 (368)
T 1mda_H          149 AGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             EEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred             EEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECcc
Confidence            888  88732                 1234445677777777764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.45  E-value=0.0077  Score=46.97  Aligned_cols=150  Identities=8%  Similarity=0.026  Sum_probs=78.9

Q ss_pred             ceEEEEEcCCCCeEEEecC--CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee--eeeeEeeee
Q psy16881         29 NMRCVRFSPDTRLLATGGD--DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF--VKQIIPTRV  104 (222)
Q Consensus        29 ~v~~l~~spdg~~l~tgs~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  104 (222)
                      ..+-++|+|++.+.++.+.  +++|+++|+.+++.+...........  .+....      ....+...  ...+...+ 
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fg--eGi~~~------g~~lyv~t~~~~~v~viD-   92 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFG--EGLTLL------NEKLYQVVWLKNIGFIYD-   92 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCE--EEEEEE------TTEEEEEETTCSEEEEEE-
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcce--EEEEEe------CCEEEEEEecCCEEEEEE-
Confidence            3678999999866666554  68999999999887766431111000  000000      00111110  00111111 


Q ss_pred             eeeccCCccccccCCC-EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCC--c---cEEEEEEcCCCCEEEEe
Q psy16881        105 GVYGQDSETVGRHTSA-VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT--R---YVTCCTFSCDDSLLASG  178 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~-i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~--~---~V~~~~~s~~~~~l~s~  178 (222)
                         ......+..-... -....++++++.++.+..++.|.++|..+.+.+..+....  .   .++.+.|. ++...+..
T Consensus        93 ---~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~  168 (266)
T 2iwa_A           93 ---RRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANI  168 (266)
T ss_dssp             ---TTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             ---CCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEec
Confidence               0011111111111 1223566777888888877888888888888776665321  1   24566666 56444444


Q ss_pred             eCCCeEEEEeCCC
Q psy16881        179 SNDKTVTIWDMLA  191 (222)
Q Consensus       179 s~D~~i~lwd~~~  191 (222)
                      ..+..|.+.|..+
T Consensus       169 ~~~~~V~vID~~t  181 (266)
T 2iwa_A          169 WQTDCIARISAKD  181 (266)
T ss_dssp             TTSSEEEEEETTT
T ss_pred             CCCCeEEEEECCC
Confidence            4567788888754

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.42  E-value=0.0095  Score=52.68  Aligned_cols=73  Identities=19%  Similarity=0.141  Sum_probs=44.8

Q ss_pred             cccCCCEEEEEEcCCCCEE-EEEeCC---CcEEEEeCCCCce--EEEeccCCccEEEEEEcCCCCEEEEeeC-CC--eEE
Q psy16881        115 GRHTSAVTSVRFNHKSSLL-VSGSVD---KTVKLWDVPSLTC--IKTLESHTRYVTCCTFSCDDSLLASGSN-DK--TVT  185 (222)
Q Consensus       115 ~~h~~~i~~l~~~~~~~~l-~sg~~d---g~I~iwd~~~~~~--~~~~~~~~~~V~~~~~s~~~~~l~s~s~-D~--~i~  185 (222)
                      ..+....... ++++++.| +....+   +.|..+|+.++..  ...+..|...+.  .|+++++.|+.... ++  .|.
T Consensus       277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~  353 (693)
T 3iuj_A          277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVE  353 (693)
T ss_dssp             ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEE
T ss_pred             eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEE
Confidence            3344444444 55666644 444433   5688899887543  345556665554  88888888776554 43  688


Q ss_pred             EEeCC
Q psy16881        186 IWDML  190 (222)
Q Consensus       186 lwd~~  190 (222)
                      +||+.
T Consensus       354 ~~d~~  358 (693)
T 3iuj_A          354 QFDYE  358 (693)
T ss_dssp             EECTT
T ss_pred             EEECC
Confidence            88863

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.38  E-value=0.0001  Score=60.28  Aligned_cols=83  Identities=14%  Similarity=0.145  Sum_probs=51.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC------------------
Q psy16881        129 KSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML------------------  190 (222)
Q Consensus       129 ~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~------------------  190 (222)
                      ++..+++++.||.|..||..+++.+.++..  ..+.+..+..++.++++++.|+.+..||..                  
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            367788888889999999888888776655  334344444567677777888888888862                  


Q ss_pred             ------CCeEEEeeCCCcEEEEeCC-CCcc
Q psy16881        191 ------ATLLASGSNDKTVTIWDMR-GNLS  213 (222)
Q Consensus       191 ------~~~l~s~~~d~~i~iwd~~-~~~~  213 (222)
                            ...+++++.|+.++.||.+ ++..
T Consensus        86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~  115 (369)
T 2hz6_A           86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQ  115 (369)
T ss_dssp             CSCC-----CCCCEEEEEEEEECCC-----
T ss_pred             CceEecCCEEEEEeCCCEEEEEECCCCcEE
Confidence                  1235556677888888886 5443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.30  E-value=0.022  Score=43.77  Aligned_cols=153  Identities=12%  Similarity=0.052  Sum_probs=74.3

Q ss_pred             eee-ccceEEEEEcCCCCeEEEecCCC--eEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee--eee
Q psy16881         24 VHI-GSNMRCVRFSPDTRLLATGGDDE--TVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF--VKQ   98 (222)
Q Consensus        24 ~~~-~~~v~~l~~spdg~~l~tgs~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   98 (222)
                      ||- .+...-|.|++ +.+..+++.+|  +|+.+|+++++............+    -+ +..   .....+...  ...
T Consensus        16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fg----eG-i~~---~~~~ly~ltw~~~~   86 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFG----AG-IVA---WRDRLIQLTWRNHE   86 (243)
T ss_dssp             ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCE----EE-EEE---ETTEEEEEESSSSE
T ss_pred             CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcce----eE-EEE---eCCEEEEEEeeCCE
Confidence            443 46678899986 66777777754  999999999887765422111000    00 000   000011000  000


Q ss_pred             eEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCC-----ccEEEEEEcCCCC
Q psy16881         99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT-----RYVTCCTFSCDDS  173 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-----~~V~~~~~s~~~~  173 (222)
                      +...+    ......+......-....+.++++.++....++.|.++|..+++.+..+....     ..++.+.+. +|.
T Consensus        87 v~v~D----~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~  161 (243)
T 3mbr_X           87 GFVYD----LATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE  161 (243)
T ss_dssp             EEEEE----TTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEEEE----CCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence            00000    00111111111222233445666777777777777777777777666554321     123445544 444


Q ss_pred             EEEEeeCCCeEEEEeCC
Q psy16881        174 LLASGSNDKTVTIWDML  190 (222)
Q Consensus       174 ~l~s~s~D~~i~lwd~~  190 (222)
                      +.+....+..|.+.|..
T Consensus       162 lyanvw~s~~I~vIDp~  178 (243)
T 3mbr_X          162 LLANVWLTSRIARIDPA  178 (243)
T ss_dssp             EEEEETTTTEEEEECTT
T ss_pred             EEEEECCCCeEEEEECC
Confidence            44333345566666664

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.18  E-value=0.0095  Score=46.36  Aligned_cols=38  Identities=8%  Similarity=0.136  Sum_probs=29.8

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMET   65 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~   65 (222)
                      .+..+.|.|+ ++.+..+.+.+|+|+.+|+++++.....
T Consensus        54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~   91 (268)
T 3nok_A           54 NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME   91 (268)
T ss_dssp             TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE
T ss_pred             ccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE
Confidence            4555788887 4677788899999999999988766544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.17  E-value=0.042  Score=44.27  Aligned_cols=76  Identities=13%  Similarity=0.049  Sum_probs=51.6

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEecc-CCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC------------------
Q psy16881        130 SSLLVSGSVDKTVKLWDVPSLTCIKTLES-HTRYVTCCTFSCDDSLLASGSNDKTVTIWDML------------------  190 (222)
Q Consensus       130 ~~~l~sg~~dg~I~iwd~~~~~~~~~~~~-~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~------------------  190 (222)
                      +..++.++.++.|..+|.++++.+..... ....+.....  .+..|+.++.+|.+..+|..                  
T Consensus       277 ~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~  354 (376)
T 3q7m_A          277 GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTE  354 (376)
T ss_dssp             TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSC
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeC
Confidence            56788888899999999999988766542 1222222222  25678888889999999864                  


Q ss_pred             ----CCeEEEeeCCCcEEEEe
Q psy16881        191 ----ATLLASGSNDKTVTIWD  207 (222)
Q Consensus       191 ----~~~l~s~~~d~~i~iwd  207 (222)
                          ...++.++.++.|..||
T Consensus       355 ~~~~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          355 PVAADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             CEEETTEEEEEBTTSCEEEEE
T ss_pred             CEEECCEEEEEeCCCEEEEEe
Confidence                12455666677777665

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.15  E-value=0.017  Score=50.95  Aligned_cols=24  Identities=13%  Similarity=0.105  Sum_probs=20.3

Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEE
Q psy16881        132 LLVSGSVDKTVKLWDVPSLTCIKT  155 (222)
Q Consensus       132 ~l~sg~~dg~I~iwd~~~~~~~~~  155 (222)
                      .++.++.+|.+.++|.++++.+..
T Consensus       316 ~v~~~~~~G~l~~lD~~tG~~l~~  339 (668)
T 1kv9_A          316 VLMQAPKNGFFYVLDRTNGKLISA  339 (668)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEE
T ss_pred             EEEEECCCCEEEEEECCCCCEecc
Confidence            688888999999999999887743

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.08  E-value=0.05  Score=42.06  Aligned_cols=146  Identities=12%  Similarity=0.176  Sum_probs=86.1

Q ss_pred             eeeccceEEEEEcCCCCeE-EEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee
Q psy16881         24 VHIGSNMRCVRFSPDTRLL-ATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT  102 (222)
Q Consensus        24 ~~~~~~v~~l~~spdg~~l-~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (222)
                      +.+...++.++|.|+++.| ++...++.|...|.. +........                                   
T Consensus        23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-----------------------------------   66 (255)
T 3qqz_A           23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-----------------------------------   66 (255)
T ss_dssp             TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-----------------------------------
T ss_pred             CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-----------------------------------
Confidence            3445679999999987655 456667777777765 333222100                                   


Q ss_pred             eeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---eEEEec------cCCccEEEEEEcCCCC
Q psy16881        103 RVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT---CIKTLE------SHTRYVTCCTFSCDDS  173 (222)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~---~~~~~~------~~~~~V~~~~~s~~~~  173 (222)
                                  .+ ......|++.+++.++++.-.++.+.++++....   .+....      ..+.....+++++.++
T Consensus        67 ------------~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~  133 (255)
T 3qqz_A           67 ------------DF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDH  133 (255)
T ss_dssp             ------------SS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTT
T ss_pred             ------------CC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCC
Confidence                        00 1235567777666665554455667777664332   122221      1233468899999988


Q ss_pred             EEEEeeCCCeEEEEeCC----------------------------------CCeEEEeeCCCcEEEEeCCCCccccCCC
Q psy16881        174 LLASGSNDKTVTIWDML----------------------------------ATLLASGSNDKTVTIWDMRGNLSVDVPL  218 (222)
Q Consensus       174 ~l~s~s~D~~i~lwd~~----------------------------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~  218 (222)
                      .|.++.+.....+|.+.                                  ..+++.+.+++.+-.+|.++...-..++
T Consensus       134 ~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L  212 (255)
T 3qqz_A          134 TFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSL  212 (255)
T ss_dssp             EEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEEC
T ss_pred             EEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEc
Confidence            77777765443333321                                  2356666777888888888775443333

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.08  E-value=0.036  Score=46.43  Aligned_cols=60  Identities=12%  Similarity=0.056  Sum_probs=43.7

Q ss_pred             CEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC---CceEEEeccC-C---------c----cEEEEEEcCCCCEEEEee
Q psy16881        120 AVTSVRFNHKSSLLVSGSV-DKTVKLWDVPS---LTCIKTLESH-T---------R----YVTCCTFSCDDSLLASGS  179 (222)
Q Consensus       120 ~i~~l~~~~~~~~l~sg~~-dg~I~iwd~~~---~~~~~~~~~~-~---------~----~V~~~~~s~~~~~l~s~s  179 (222)
                      ....|.++++|++|+.+.. .+.|.++|+.+   .+.+..+... .         .    ....+.++|+|++|+++.
T Consensus       322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            4567889999998887765 67899999853   3445444322 0         1    246789999999999887

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.06  E-value=0.0099  Score=46.75  Aligned_cols=47  Identities=19%  Similarity=0.025  Sum_probs=20.9

Q ss_pred             CcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEe
Q psy16881        140 KTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD  188 (222)
Q Consensus       140 g~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd  188 (222)
                      +.|..+| .+++.+.........+.++..+++|.+. .++.++.+..+|
T Consensus       195 ~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~  241 (330)
T 3hxj_A          195 DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIY-VTSLDGHLYAIN  241 (330)
T ss_dssp             SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEE-EEETTTEEEEEC
T ss_pred             CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEE-EEcCCCeEEEEC
Confidence            4555555 4444444433333334455555544333 233344444444

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.03  E-value=0.007  Score=53.51  Aligned_cols=50  Identities=12%  Similarity=0.176  Sum_probs=38.8

Q ss_pred             CcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        140 KTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       140 g~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      |.|..||+++++.+-++... ..+....+...+.+++.++.|+.+++||..
T Consensus       457 g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~  506 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAA  506 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             cEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence            78999999999987766533 233344566678889999999999999985

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.01  E-value=0.0028  Score=56.69  Aligned_cols=68  Identities=16%  Similarity=0.168  Sum_probs=41.8

Q ss_pred             EEEEcCCCCEEEEEeCC-----CcEEEEeCCCCce--EEEec-cCCccEEEEEEcCCCCEEEEeeC---CCeEEEEeCC
Q psy16881        123 SVRFNHKSSLLVSGSVD-----KTVKLWDVPSLTC--IKTLE-SHTRYVTCCTFSCDDSLLASGSN---DKTVTIWDML  190 (222)
Q Consensus       123 ~l~~~~~~~~l~sg~~d-----g~I~iwd~~~~~~--~~~~~-~~~~~V~~~~~s~~~~~l~s~s~---D~~i~lwd~~  190 (222)
                      .+.|+|+++.|+....+     ..|.++++.+.+.  ...+. .+......+.|||+|++|+..+.   ...|.++|+.
T Consensus       225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~  303 (751)
T 2xe4_A          225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR  303 (751)
T ss_dssp             CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred             eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence            36688888766655554     2577788876531  12222 22345667899999998886552   2356666653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.97  E-value=0.041  Score=44.34  Aligned_cols=28  Identities=14%  Similarity=0.118  Sum_probs=22.0

Q ss_pred             CCCeEEEecCCCeEEEEeCCCCceEEee
Q psy16881         38 DTRLLATGGDDETVTVWRSDDLSLIMET   65 (222)
Q Consensus        38 dg~~l~tgs~Dg~i~iwd~~~~~~~~~~   65 (222)
                      ++..|++++.++.|..+|.++++.....
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~   79 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSV   79 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeee
Confidence            3566777788999999999888776654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.97  E-value=0.03  Score=46.92  Aligned_cols=58  Identities=16%  Similarity=0.151  Sum_probs=44.2

Q ss_pred             EEEEcCCCCEEEEEe-------------------CCCcEEEEeCCCCceEEEeccCC--ccEEEEEE--cCCCCEEEEee
Q psy16881        123 SVRFNHKSSLLVSGS-------------------VDKTVKLWDVPSLTCIKTLESHT--RYVTCCTF--SCDDSLLASGS  179 (222)
Q Consensus       123 ~l~~~~~~~~l~sg~-------------------~dg~I~iwd~~~~~~~~~~~~~~--~~V~~~~~--s~~~~~l~s~s  179 (222)
                      .+.|+|+++.+++..                   ....|.+||+.+++.+.++....  .....+.|  +|+++++++++
T Consensus       192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~  271 (462)
T 2ece_A          192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINM  271 (462)
T ss_dssp             CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEE
T ss_pred             eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEE
Confidence            367889999888875                   36899999999888887776531  23445655  99999999887


Q ss_pred             C
Q psy16881        180 N  180 (222)
Q Consensus       180 ~  180 (222)
                      +
T Consensus       272 e  272 (462)
T 2ece_A          272 V  272 (462)
T ss_dssp             E
T ss_pred             e
Confidence            5

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.82  E-value=0.0022  Score=55.44  Aligned_cols=125  Identities=18%  Similarity=0.228  Sum_probs=75.7

Q ss_pred             cceEEEEEcCCCCeEE-EecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         28 SNMRCVRFSPDTRLLA-TGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~-tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ....++.++|||++++ ++..+++|.++|+.+......    +....              .        ..+.    . 
T Consensus       277 ~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~----~~l~~--------------~--------~~v~----~-  325 (595)
T 1fwx_A          277 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFY----ENADP--------------R--------SAVV----A-  325 (595)
T ss_dssp             SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHH----SCCCG--------------G--------GGEE----E-
T ss_pred             CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccc----cccCc--------------c--------cceE----E-
Confidence            3456689999999765 555699999999874321100    00000              0        0000    0 


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC----------CceEEEeccCCccEE-----EEEEcCC
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS----------LTCIKTLESHTRYVT-----CCTFSCD  171 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~----------~~~~~~~~~~~~~V~-----~~~~s~~  171 (222)
                            .+. -......++|+++|+...+.-.|+.|.+||+.+          .+.+.++..|..+-.     .++++++
T Consensus       326 ------~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~D  398 (595)
T 1fwx_A          326 ------EPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDAT  398 (595)
T ss_dssp             ------CCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCC
T ss_pred             ------EcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCC
Confidence                  000 123356789999994444556689999999876          556777776655421     2345799


Q ss_pred             CCEEEEee---CCCeE----------EEEeCC
Q psy16881        172 DSLLASGS---NDKTV----------TIWDML  190 (222)
Q Consensus       172 ~~~l~s~s---~D~~i----------~lwd~~  190 (222)
                      |++|+++.   .|+.+          .++|+.
T Consensus       399 Gk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis  430 (595)
T 1fwx_A          399 NDWLVCLSKFSKDRFLNVGPLKPENDQLIDIS  430 (595)
T ss_dssp             SSEEEEEESCCTTSSCCCCSSCCEEEEEEECS
T ss_pred             CCEEEEcCCCCccccccCCCCCCCcceEEEcC
Confidence            99999864   45532          678874

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.81  E-value=0.004  Score=55.18  Aligned_cols=51  Identities=16%  Similarity=0.179  Sum_probs=37.5

Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCcc-EEEEEEcCCCCEEE
Q psy16881        126 FNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRY-VTCCTFSCDDSLLA  176 (222)
Q Consensus       126 ~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~-V~~~~~s~~~~~l~  176 (222)
                      +...+..++.|+.||.|+.||.++++.+.++...... ..-++|..+|++.+
T Consensus       482 ~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          482 LSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence            4456789999999999999999999999887654322 12356667776444

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.37  E-value=0.088  Score=41.16  Aligned_cols=86  Identities=10%  Similarity=0.033  Sum_probs=57.9

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC-----------
Q psy16881        122 TSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML-----------  190 (222)
Q Consensus       122 ~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~-----------  190 (222)
                      .++...++++ ++.++.++.|..+|.. ++.+..+......+.++..+.++.+.+..   +.+..+|..           
T Consensus       140 ~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d~~g~~~~~~~~~~  214 (330)
T 3hxj_A          140 ATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAINPDGTEKWNFYAGY  214 (330)
T ss_dssp             SCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEECTTSCEEEEECCSS
T ss_pred             eeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEECCCCcEEEEEccCC
Confidence            3445555666 6667788999999988 77766665555556677777777765544   567777632           


Q ss_pred             ----------CCeEEEeeCCCcEEEEeCCCCc
Q psy16881        191 ----------ATLLASGSNDKTVTIWDMRGNL  212 (222)
Q Consensus       191 ----------~~~l~s~~~d~~i~iwd~~~~~  212 (222)
                                ...+..++.++.+..+|..++.
T Consensus       215 ~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~  246 (330)
T 3hxj_A          215 WTVTRPAISEDGTIYVTSLDGHLYAINPDGTE  246 (330)
T ss_dssp             CCCSCCEECTTSCEEEEETTTEEEEECTTSCE
T ss_pred             cceeceEECCCCeEEEEcCCCeEEEECCCCCE
Confidence                      1246667777888888866544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.36  E-value=0.32  Score=42.15  Aligned_cols=26  Identities=4%  Similarity=-0.104  Sum_probs=21.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEec
Q psy16881        132 LLVSGSVDKTVKLWDVPSLTCIKTLE  157 (222)
Q Consensus       132 ~l~sg~~dg~I~iwd~~~~~~~~~~~  157 (222)
                      .++.++.+|.+.++|.++++.+..+.
T Consensus       338 ~v~~~~~~G~l~~lD~~tG~~lw~~~  363 (582)
T 1flg_A          338 ATAHADRNGFFYVVDRSNGKLQNAFP  363 (582)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCceEEEEECCCCCEecccc
Confidence            67888889999999998888776543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=96.29  E-value=0.25  Score=37.67  Aligned_cols=97  Identities=9%  Similarity=-0.006  Sum_probs=59.4

Q ss_pred             CCEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCceEEEe-ccCCccEEEEEEcCCCCEEEE-eeCCCeEEEEeCCC--
Q psy16881        119 SAVTSVRFNHKSSLLVSGSV---DKTVKLWDVPSLTCIKTL-ESHTRYVTCCTFSCDDSLLAS-GSNDKTVTIWDMLA--  191 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~sg~~---dg~I~iwd~~~~~~~~~~-~~~~~~V~~~~~s~~~~~l~s-~s~D~~i~lwd~~~--  191 (222)
                      .....+++++++..++.+..   .+.|..+++... ....+ ...-.....+++++++..|+. -...+.|..+|+.+  
T Consensus       122 ~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~  200 (267)
T 1npe_A          122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (267)
T ss_dssp             SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence            34678999997666655554   367888877532 22222 122345788999998766654 44557898888741  


Q ss_pred             ------------------CeEEEee-CCCcEEEEeCC-CCccccC
Q psy16881        192 ------------------TLLASGS-NDKTVTIWDMR-GNLSVDV  216 (222)
Q Consensus       192 ------------------~~l~s~~-~d~~i~iwd~~-~~~~~~~  216 (222)
                                        ..+..+. .++.|..+|.. ++....+
T Consensus       201 ~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i  245 (267)
T 1npe_A          201 RRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (267)
T ss_dssp             EEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence                              2233333 45678888886 4444333

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.28  E-value=0.14  Score=39.73  Aligned_cols=148  Identities=7%  Similarity=-0.008  Sum_probs=83.3

Q ss_pred             EEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCC
Q psy16881         32 CVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDS  111 (222)
Q Consensus        32 ~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (222)
                      .+++. .+++.++.-.++++.++|..+.+.+.++... ..    .+|+..+.   ......+.....+...+... ....
T Consensus        70 Gi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~----~g~glt~D---g~~l~vs~gs~~l~viD~~t-~~v~  139 (266)
T 2iwa_A           70 GLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK----DGWGLATD---GKILYGSDGTSILYEIDPHT-FKLI  139 (266)
T ss_dssp             EEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECC-SS----SCCEEEEC---SSSEEEECSSSEEEEECTTT-CCEE
T ss_pred             EEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECC-CC----CeEEEEEC---CCEEEEECCCCeEEEEECCC-CcEE
Confidence            46676 5688888889999999999999988887533 00    12221111   11111111111222111100 0000


Q ss_pred             c--cccc---cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccC-------------CccEEEEEEcCCCC
Q psy16881        112 E--TVGR---HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESH-------------TRYVTCCTFSCDDS  173 (222)
Q Consensus       112 ~--~~~~---h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~-------------~~~V~~~~~s~~~~  173 (222)
                      .  .+..   .-..++.+.|. ++..++....++.|.+.|..+++.+..+...             ......++|+++++
T Consensus       140 ~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~  218 (266)
T 2iwa_A          140 KKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK  218 (266)
T ss_dssp             EEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT
T ss_pred             EEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC
Confidence            0  0110   11235667776 5644444445789999999999988877531             12457899999987


Q ss_pred             EEEE-eeCCCeEEEEeCC
Q psy16881        174 LLAS-GSNDKTVTIWDML  190 (222)
Q Consensus       174 ~l~s-~s~D~~i~lwd~~  190 (222)
                      .++. +....++.+.++.
T Consensus       219 ~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          219 RIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             EEEEEETTCSEEEEEEEE
T ss_pred             EEEEECCCCCeEEEEEEe
Confidence            6554 5456677777763

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.20  E-value=0.026  Score=46.09  Aligned_cols=69  Identities=9%  Similarity=-0.021  Sum_probs=52.0

Q ss_pred             EEEcCCCCEEEEEeC---------CCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCC-EEEEee-CCCeEEEEeCCCC
Q psy16881        124 VRFNHKSSLLVSGSV---------DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS-LLASGS-NDKTVTIWDMLAT  192 (222)
Q Consensus       124 l~~~~~~~~l~sg~~---------dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~-~l~s~s-~D~~i~lwd~~~~  192 (222)
                      +.++++++.++.+..         ++.+.++|+.+++.+..+.... ....+.|+++|+ ++++.. .++.|.++|+.+.
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~  347 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence            678999987776533         2355699999999888776543 577899999997 555666 5899999998754


Q ss_pred             e
Q psy16881        193 L  193 (222)
Q Consensus       193 ~  193 (222)
                      .
T Consensus       348 k  348 (368)
T 1mda_H          348 Q  348 (368)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.15  E-value=0.44  Score=41.14  Aligned_cols=26  Identities=12%  Similarity=-0.055  Sum_probs=20.3

Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEec
Q psy16881        132 LLVSGSVDKTVKLWDVPSLTCIKTLE  157 (222)
Q Consensus       132 ~l~sg~~dg~I~iwd~~~~~~~~~~~  157 (222)
                      .++.++.+|.+.+.|..+++.+....
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~  343 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeec
Confidence            56778888899999998888776543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.05  E-value=0.39  Score=37.72  Aligned_cols=58  Identities=10%  Similarity=0.073  Sum_probs=36.5

Q ss_pred             EEEEEcCCCCEEEEE-eCCCcEEEEeCCCCc--eEEEeccCCccEEEEEEcCCCCEEEEeeC
Q psy16881        122 TSVRFNHKSSLLVSG-SVDKTVKLWDVPSLT--CIKTLESHTRYVTCCTFSCDDSLLASGSN  180 (222)
Q Consensus       122 ~~l~~~~~~~~l~sg-~~dg~I~iwd~~~~~--~~~~~~~~~~~V~~~~~s~~~~~l~s~s~  180 (222)
                      ..++++++++.++.+ ...+.|.++++....  ....+..... ...++++++|++.++...
T Consensus       188 ~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          188 GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence            458899999866555 556789999886421  1111111112 667889999987766543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=95.81  E-value=0.081  Score=45.84  Aligned_cols=68  Identities=16%  Similarity=0.166  Sum_probs=49.5

Q ss_pred             EEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCc------------eEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEE
Q psy16881        121 VTSVRFNHKSSLLVSG-SVDKTVKLWDVPSLT------------CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW  187 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg-~~dg~I~iwd~~~~~------------~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lw  187 (222)
                      ..++.++|+|++++.+ ..+++|.++|+.+.+            .+.++.... ...-++|+++|....+.--|.+|.+|
T Consensus       279 PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~-gP~h~aF~~dG~aY~t~~ldsqV~kw  357 (595)
T 1fwx_A          279 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL-GPLHTAFDGRGNAYTSLFLDSQVVKW  357 (595)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS-CEEEEEECTTSEEEEEETTTTEEEEE
T ss_pred             ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC-CcceEEECCCCeEEEEEecCCcEEEE
Confidence            4568899999965555 468899999998653            344444433 36789999999444456688999999


Q ss_pred             eC
Q psy16881        188 DM  189 (222)
Q Consensus       188 d~  189 (222)
                      |+
T Consensus       358 di  359 (595)
T 1fwx_A          358 NI  359 (595)
T ss_dssp             EH
T ss_pred             Eh
Confidence            96

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.70  E-value=0.95  Score=39.37  Aligned_cols=26  Identities=15%  Similarity=0.046  Sum_probs=20.4

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEe
Q psy16881        131 SLLVSGSVDKTVKLWDVPSLTCIKTL  156 (222)
Q Consensus       131 ~~l~sg~~dg~I~iwd~~~~~~~~~~  156 (222)
                      +.++.++.+|.+.+.|.++++.+...
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~lw~~  349 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGALVSAN  349 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCCcEEEEEECCCCCEeecc
Confidence            45777888899999998888877554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.63  E-value=0.35  Score=40.22  Aligned_cols=71  Identities=24%  Similarity=0.255  Sum_probs=50.0

Q ss_pred             cCCCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCC-Cc-eE--------EEeccCCccEEEEEEcCCCCEEEEee--CC
Q psy16881        117 HTSAVTSVRFNHKS---SLLVSGSVDKTVKLWDVPS-LT-CI--------KTLESHTRYVTCCTFSCDDSLLASGS--ND  181 (222)
Q Consensus       117 h~~~i~~l~~~~~~---~~l~sg~~dg~I~iwd~~~-~~-~~--------~~~~~~~~~V~~~~~s~~~~~l~s~s--~D  181 (222)
                      ...+|..+.|||.+   ..+++-..|+.||+||+.. .. ..        .........|.+++|..++-.|+..+  ..
T Consensus       123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~  202 (452)
T 3pbp_A          123 PKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEG  202 (452)
T ss_dssp             CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTS
T ss_pred             CCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCC
Confidence            36789999999875   4899999999999999974 21 11        11122335688999998877777655  66


Q ss_pred             CeEEEE
Q psy16881        182 KTVTIW  187 (222)
Q Consensus       182 ~~i~lw  187 (222)
                      |.|.-.
T Consensus       203 GDIYAl  208 (452)
T 3pbp_A          203 GDIFAF  208 (452)
T ss_dssp             CEEEEE
T ss_pred             CCEEEE
Confidence            766543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=95.61  E-value=0.31  Score=37.86  Aligned_cols=87  Identities=10%  Similarity=0.128  Sum_probs=59.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCc-cEEEEEEcCCCCEEEEeeCCCeEEEEeCC---------
Q psy16881        121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTR-YVTCCTFSCDDSLLASGSNDKTVTIWDML---------  190 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~-~V~~~~~s~~~~~l~s~s~D~~i~lwd~~---------  190 (222)
                      ...+.|+. +..+.+.+.+|.|+++|+++++.+.++ .... .-..+++.. +++.+....++.+.+||..         
T Consensus        57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~  133 (268)
T 3nok_A           57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTR  133 (268)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred             cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence            35677763 567777788889999999999888776 3333 223466553 3444455578899999974         


Q ss_pred             -----------CCeEEEeeCCCcEEEEeCCC
Q psy16881        191 -----------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       191 -----------~~~l~s~~~d~~i~iwd~~~  210 (222)
                                 ...|+.+..+++|+++|..+
T Consensus       134 ~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T  164 (268)
T 3nok_A          134 YSGEGWGLCYWNGKLVRSDGGTMLTFHEPDG  164 (268)
T ss_dssp             CSSCCCCEEEETTEEEEECSSSEEEEECTTT
T ss_pred             CCCceeEEecCCCEEEEECCCCEEEEEcCCC
Confidence                       23455555578899999874

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=95.60  E-value=0.7  Score=38.29  Aligned_cols=70  Identities=9%  Similarity=0.002  Sum_probs=46.6

Q ss_pred             EEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceEEEec-cCCccEEEEEEcCCCCEEE-EeeCCCeEEEEeCC
Q psy16881        121 VTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTCIKTLE-SHTRYVTCCTFSCDDSLLA-SGSNDKTVTIWDML  190 (222)
Q Consensus       121 i~~l~~~~-~~~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~~~~V~~~~~s~~~~~l~-s~s~D~~i~lwd~~  190 (222)
                      ...++++| ++.++++-..++.|..+|........... +.......++|+|++++|+ +-.....|..++..
T Consensus       228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            45677899 56666666667889999987655422221 1223467899999999544 45566788887753

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=95.42  E-value=0.29  Score=37.85  Aligned_cols=87  Identities=10%  Similarity=0.145  Sum_probs=59.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceEEEeccCCcc-EEEEEEcCCCCEEEEe-eCCCeEEEEeCC------
Q psy16881        121 VTSVRFNHKSSLLVSGSVDK--TVKLWDVPSLTCIKTLESHTRY-VTCCTFSCDDSLLASG-SNDKTVTIWDML------  190 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg~~dg--~I~iwd~~~~~~~~~~~~~~~~-V~~~~~s~~~~~l~s~-s~D~~i~lwd~~------  190 (222)
                      ...+.|+ ++..+.+.+.+|  .|+++|+++++.+.++...... -..+++.  +..|+.. ..++.+.+||..      
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEE
Confidence            3567887 566666777666  8999999999998877654432 2335544  4555544 457899999974      


Q ss_pred             --------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        191 --------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       191 --------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                                    ...|+.+..+++|.++|..+
T Consensus       122 ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T  155 (262)
T 3nol_A          122 SFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPES  155 (262)
T ss_dssp             EEECSSCCCCEEECSSCEEECCSSSEEEEECTTT
T ss_pred             EEECCCCceEEecCCCEEEEECCCCeEEEEcCCC
Confidence                          23344444467899999874

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=95.16  E-value=0.53  Score=36.00  Aligned_cols=88  Identities=13%  Similarity=0.098  Sum_probs=58.3

Q ss_pred             EEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCceEEEeccCCcc-EEEEEEcCCCCEEEEeeCCCeEEEEeCC-------
Q psy16881        121 VTSVRFNHKSSLLVSGSVD--KTVKLWDVPSLTCIKTLESHTRY-VTCCTFSCDDSLLASGSNDKTVTIWDML-------  190 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg~~d--g~I~iwd~~~~~~~~~~~~~~~~-V~~~~~s~~~~~l~s~s~D~~i~lwd~~-------  190 (222)
                      ...+.|+. +..+.+.+.+  +.|+.+|+.+++.+.++...... -..+++. .+++......++.+.+||..       
T Consensus        23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~t  100 (243)
T 3mbr_X           23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRAR  100 (243)
T ss_dssp             EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence            55788876 5556666664  48999999999998877654432 2334544 23344445577899999974       


Q ss_pred             -------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        191 -------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       191 -------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                                   ...|+.+..+++|.++|..+
T Consensus       101 i~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t  133 (243)
T 3mbr_X          101 FRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDT  133 (243)
T ss_dssp             EECSSCCCEEEECSSCEEEECSSSEEEEECTTT
T ss_pred             EeCCCCceEEeeCCCEEEEECCCCeEEEEeCCC
Confidence                         22344444577899999874

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=95.04  E-value=0.95  Score=35.43  Aligned_cols=31  Identities=13%  Similarity=0.149  Sum_probs=24.9

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEEeCCCC
Q psy16881         29 NMRCVRFSPDTRLLATGGDDETVTVWRSDDL   59 (222)
Q Consensus        29 ~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~   59 (222)
                      ....++++++|+++.++..++.|..|+..+.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~   50 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNS   50 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTT
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCC
Confidence            3556889999998888888999999987643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=94.95  E-value=0.63  Score=37.33  Aligned_cols=70  Identities=11%  Similarity=0.074  Sum_probs=48.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCceEEEeccC------CccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        120 AVTSVRFNHKSSLLVSGSVD-KTVKLWDVPSLTCIKTLESH------TRYVTCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       120 ~i~~l~~~~~~~~l~sg~~d-g~I~iwd~~~~~~~~~~~~~------~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      ....++.+++|+..++++.- +.|...+.. ++.+..+...      ....+-++++|+|+.|++....+.+..+|+.
T Consensus       138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          138 GVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             CCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            36778889999988888877 777666654 3333322111      1124578999999988887669999999864

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=94.27  E-value=0.15  Score=44.00  Aligned_cols=31  Identities=16%  Similarity=0.104  Sum_probs=26.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEeccC
Q psy16881        129 KSSLLVSGSVDKTVKLWDVPSLTCIKTLESH  159 (222)
Q Consensus       129 ~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~  159 (222)
                      .+..++.++.|+.|..+|.++++.+.++...
T Consensus       474 ~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~  504 (571)
T 2ad6_A          474 KGGLVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence            4677888999999999999999998877643

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=94.25  E-value=0.14  Score=44.45  Aligned_cols=48  Identities=19%  Similarity=0.196  Sum_probs=33.8

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccE-EEEEEcCCCCEEE
Q psy16881        129 KSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV-TCCTFSCDDSLLA  176 (222)
Q Consensus       129 ~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V-~~~~~s~~~~~l~  176 (222)
                      .+..++.|+.|+.++.+|.++++.+-++......+ .-+.+..+|++.+
T Consensus       496 agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence            36788889999999999999999998876543221 1145555665333

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=93.95  E-value=0.4  Score=41.93  Aligned_cols=68  Identities=16%  Similarity=0.247  Sum_probs=43.4

Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEeCCCCceEEEeccC-CccEEEEEEcCCCCEEEEee-CC-----CeEEEEeCC
Q psy16881        123 SVRFNHKSSLLVSGSV-DKTVKLWDVPSLTCIKTLESH-TRYVTCCTFSCDDSLLASGS-ND-----KTVTIWDML  190 (222)
Q Consensus       123 ~l~~~~~~~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~-~~~V~~~~~s~~~~~l~s~s-~D-----~~i~lwd~~  190 (222)
                      ++++..++++++.|+. ++.+.+||..+.+-...-..+ ...-.+++..+++++++.|+ .+     ..+.+||..
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence            3456678888888884 557999998766433211111 11123455567899998888 44     468888874

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=93.78  E-value=1.8  Score=33.56  Aligned_cols=30  Identities=13%  Similarity=0.233  Sum_probs=23.9

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCC
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSD   57 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~   57 (222)
                      .....++++++|+++++-..+++|..|+.+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~   61 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPD   61 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCC
Confidence            456778999999977777678898888764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=93.61  E-value=2.6  Score=34.87  Aligned_cols=31  Identities=13%  Similarity=0.037  Sum_probs=18.0

Q ss_pred             eEEEEEcCC--CCeEEEecCCCeEEEEeCCCCc
Q psy16881         30 MRCVRFSPD--TRLLATGGDDETVTVWRSDDLS   60 (222)
Q Consensus        30 v~~l~~spd--g~~l~tgs~Dg~i~iwd~~~~~   60 (222)
                      ...++++|+  +..|..+...+.|+.++..++.
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~  173 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY  173 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTE
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCE
Confidence            456788874  3334443333777777765443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=92.79  E-value=0.79  Score=40.08  Aligned_cols=89  Identities=11%  Similarity=0.245  Sum_probs=57.9

Q ss_pred             EEEEcC-CCCEEEEEeCCC-----------cEEEEeCCCCce--EEEec-cCCccEEEEEEcCCCCEEEEee-CCCeEEE
Q psy16881        123 SVRFNH-KSSLLVSGSVDK-----------TVKLWDVPSLTC--IKTLE-SHTRYVTCCTFSCDDSLLASGS-NDKTVTI  186 (222)
Q Consensus       123 ~l~~~~-~~~~l~sg~~dg-----------~I~iwd~~~~~~--~~~~~-~~~~~V~~~~~s~~~~~l~s~s-~D~~i~l  186 (222)
                      .+++.+ ++++++.|+.++           .+.+||..+++.  +.... .+.....++++..++++++.|+ .+..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            345556 778888887543           588899877643  22221 2222333467778999999988 4468999


Q ss_pred             EeCC------------------------CCeEEEee-CC-----CcEEEEeCCCC
Q psy16881        187 WDML------------------------ATLLASGS-ND-----KTVTIWDMRGN  211 (222)
Q Consensus       187 wd~~------------------------~~~l~s~~-~d-----~~i~iwd~~~~  211 (222)
                      ||..                        ..+++.|+ .+     ..+.+||+.+.
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            9963                        34567777 33     46888998743

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=92.45  E-value=1.9  Score=38.46  Aligned_cols=30  Identities=20%  Similarity=0.129  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCEEEEEeC---CCcEEEEeCCCC
Q psy16881        121 VTSVRFNHKSSLLVSGSV---DKTVKLWDVPSL  150 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg~~---dg~I~iwd~~~~  150 (222)
                      ...+.|+++|++|+..+.   ...|.++|+.++
T Consensus       273 ~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          273 SAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            356788899887665542   335777788654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=92.44  E-value=3.6  Score=33.21  Aligned_cols=73  Identities=19%  Similarity=0.234  Sum_probs=49.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-----CCceEEEec-cC-CccEEEEEEc--CCCC-EEEEee-CCCeEEE
Q psy16881        118 TSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP-----SLTCIKTLE-SH-TRYVTCCTFS--CDDS-LLASGS-NDKTVTI  186 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~-----~~~~~~~~~-~~-~~~V~~~~~s--~~~~-~l~s~s-~D~~i~l  186 (222)
                      .+.+..+..++....|+.+-++.-|-.+|.+     +.+.+..+. ++ ...+..+++.  ++++ +|++++ .+.+..+
T Consensus       179 gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~V  258 (355)
T 3amr_A          179 NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAI  258 (355)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred             CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEE
Confidence            3467888899888899999998766666654     344555442 22 2357888874  4444 565555 5668999


Q ss_pred             EeCC
Q psy16881        187 WDML  190 (222)
Q Consensus       187 wd~~  190 (222)
                      ||..
T Consensus       259 ydr~  262 (355)
T 3amr_A          259 YDRQ  262 (355)
T ss_dssp             EESS
T ss_pred             EECC
Confidence            9985

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.21  E-value=3.5  Score=32.98  Aligned_cols=27  Identities=19%  Similarity=0.342  Sum_probs=21.1

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEe
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWR   55 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd   55 (222)
                      .....++|.|+|+++++ ..+|+|++++
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~   57 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR   57 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE
Confidence            44678999999996555 5679998887

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.64  E-value=3.4  Score=31.21  Aligned_cols=60  Identities=10%  Similarity=-0.001  Sum_probs=38.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE------EEe-ccCCccEEEEEEcCCCCEEEEeeCCCeE
Q psy16881        121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCI------KTL-ESHTRYVTCCTFSCDDSLLASGSNDKTV  184 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~------~~~-~~~~~~V~~~~~s~~~~~l~s~s~D~~i  184 (222)
                      ...+.|+++|.+.++  .||.|.-++-.+...-      ..+ ...=..+..+.|+|+|.+-+..  |+.+
T Consensus        90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A           90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence            356888999886666  4698877775331110      111 1111457899999999877766  7764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=91.31  E-value=7.1  Score=34.22  Aligned_cols=71  Identities=11%  Similarity=0.113  Sum_probs=49.3

Q ss_pred             EEEEcCCCCEEEEEeCCC-------------------cEEEEeCCCCceEEEecc--CC-------ccEEEEEEcCCCC-
Q psy16881        123 SVRFNHKSSLLVSGSVDK-------------------TVKLWDVPSLTCIKTLES--HT-------RYVTCCTFSCDDS-  173 (222)
Q Consensus       123 ~l~~~~~~~~l~sg~~dg-------------------~I~iwd~~~~~~~~~~~~--~~-------~~V~~~~~s~~~~-  173 (222)
                      .+++++.++.++.++.++                   .|.-+|.++++.+-.++.  |.       .++....+..+|+ 
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~  313 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP  313 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence            467888888888888766                   388999999998876653  22       1222222233554 


Q ss_pred             --EEEEeeCCCeEEEEeCCCCe
Q psy16881        174 --LLASGSNDKTVTIWDMLATL  193 (222)
Q Consensus       174 --~l~s~s~D~~i~lwd~~~~~  193 (222)
                        .++.++.+|.+.++|..+..
T Consensus       314 ~~~v~~~~~~G~l~~lD~~tG~  335 (668)
T 1kv9_A          314 RKVLMQAPKNGFFYVLDRTNGK  335 (668)
T ss_dssp             EEEEEECCTTSEEEEEETTTCC
T ss_pred             EEEEEEECCCCEEEEEECCCCC
Confidence              68889999999999976443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=91.22  E-value=4.4  Score=31.69  Aligned_cols=31  Identities=6%  Similarity=0.028  Sum_probs=18.8

Q ss_pred             cceEEEEEcCCCC-eEEEecCCCeEEEEeCCC
Q psy16881         28 SNMRCVRFSPDTR-LLATGGDDETVTVWRSDD   58 (222)
Q Consensus        28 ~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~~~   58 (222)
                      ..+..++|+++++ +..+-...++|..+++..
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g   61 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDR   61 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCC
Confidence            3456788887654 444555567787777653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=90.96  E-value=0.93  Score=39.40  Aligned_cols=46  Identities=13%  Similarity=0.150  Sum_probs=32.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccE-EEEEEcCCCCE
Q psy16881        129 KSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV-TCCTFSCDDSL  174 (222)
Q Consensus       129 ~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V-~~~~~s~~~~~  174 (222)
                      .+..++.++.|+.++.+|.++++.+-++......+ .-+.+..+|++
T Consensus       483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence            46788889999999999999999988775433211 12344456653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=90.67  E-value=4.8  Score=31.14  Aligned_cols=69  Identities=13%  Similarity=0.084  Sum_probs=46.4

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeC-CC-eEEEEeC
Q psy16881        119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN-DK-TVTIWDM  189 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~-D~-~i~lwd~  189 (222)
                      .....++|+++++.+++-..++.|..||.... ....+.. ...+..++++++|+++++... ++ .|..+|.
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~  102 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVK  102 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcC
Confidence            34678999999887777667889999997643 3333322 345788999999997665533 22 3555553

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=90.61  E-value=5.8  Score=32.01  Aligned_cols=68  Identities=7%  Similarity=0.094  Sum_probs=48.9

Q ss_pred             CEEEEEE--cCC-CC-EEEEEeCCCcEEEEeCC-------CCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEe
Q psy16881        120 AVTSVRF--NHK-SS-LLVSGSVDKTVKLWDVP-------SLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD  188 (222)
Q Consensus       120 ~i~~l~~--~~~-~~-~l~sg~~dg~I~iwd~~-------~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd  188 (222)
                      .+..+++  ++. ++ +++....+|.+..|++.       +.+.+.++... ..+..+..++....|+.+-++.-|-.+|
T Consensus       129 ~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~d  207 (355)
T 3amr_A          129 EVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWKFS  207 (355)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             CeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEecccceEEEEe
Confidence            3444555  664 44 68888889999999883       33556777654 3578888998888999998886665555

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=90.59  E-value=6.1  Score=32.19  Aligned_cols=56  Identities=11%  Similarity=0.029  Sum_probs=24.0

Q ss_pred             EEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEE
Q psy16881        121 VTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA  176 (222)
Q Consensus       121 i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~  176 (222)
                      ...+++++.++ ++++-...+.|.+.++........+...-.....++++|.+..|+
T Consensus       161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly  217 (400)
T 3p5b_L          161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY  217 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEE
T ss_pred             cccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEE
Confidence            34555554333 233333345555555543322222222223345566665444444

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=90.47  E-value=9.1  Score=34.03  Aligned_cols=112  Identities=10%  Similarity=0.161  Sum_probs=66.9

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY  107 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (222)
                      ..|.++...++|++|..|..++-|..|+..++.... +...                                       
T Consensus       406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~---------------------------------------  445 (795)
T 4a2l_A          406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FNQR---------------------------------------  445 (795)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-ECTT---------------------------------------
T ss_pred             ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-eecC---------------------------------------
Confidence            568888888888845556666778888876543211 0000                                       


Q ss_pred             ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec------cCCccEEEEEEcCCCCEEEEeeCC
Q psy16881        108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE------SHTRYVTCCTFSCDDSLLASGSND  181 (222)
Q Consensus       108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~------~~~~~V~~~~~s~~~~~l~s~s~D  181 (222)
                         ...  -+...|.++..+++|++.+.. . +-+.+||.++++......      .....|.++..+++|++.+... .
T Consensus       446 ---~~~--l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~  517 (795)
T 4a2l_A          446 ---NSQ--LVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E  517 (795)
T ss_dssp             ---TSC--CSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S
T ss_pred             ---CCC--cCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C
Confidence               000  023457888888877755544 4 457788887664432111      1235689999999988776554 4


Q ss_pred             CeEEEEe
Q psy16881        182 KTVTIWD  188 (222)
Q Consensus       182 ~~i~lwd  188 (222)
                      | +..||
T Consensus       518 G-l~~~~  523 (795)
T 4a2l_A          518 G-LSVFK  523 (795)
T ss_dssp             C-EEEEE
T ss_pred             c-eEEEe
Confidence            3 55554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=90.28  E-value=6.9  Score=32.31  Aligned_cols=68  Identities=4%  Similarity=-0.063  Sum_probs=42.6

Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceEEEe-c-cCCccEEEEEEcCCCCEEE-EeeCCCeEEEEeC
Q psy16881        122 TSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTCIKTL-E-SHTRYVTCCTFSCDDSLLA-SGSNDKTVTIWDM  189 (222)
Q Consensus       122 ~~l~~~~-~~~~l~sg~~dg~I~iwd~~~~~~~~~~-~-~~~~~V~~~~~s~~~~~l~-s~s~D~~i~lwd~  189 (222)
                      ..+++++ +++++++-..++.|..+|..++.....+ . +....-..++|+|+++.|+ +-.....|..++.
T Consensus       231 ~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~  302 (433)
T 4hw6_A          231 KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDY  302 (433)
T ss_dssp             CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEB
T ss_pred             CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeC
Confidence            4467888 5665555556778989988766542222 1 1122234689999998554 4455678888774

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=90.21  E-value=6  Score=31.51  Aligned_cols=28  Identities=7%  Similarity=0.004  Sum_probs=12.2

Q ss_pred             eEEEEEcCCCCeE-EEecCCCeEEEEeCC
Q psy16881         30 MRCVRFSPDTRLL-ATGGDDETVTVWRSD   57 (222)
Q Consensus        30 v~~l~~spdg~~l-~tgs~Dg~i~iwd~~   57 (222)
                      +..++|++....| .+-...++|+.++++
T Consensus        75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~  103 (349)
T 3v64_C           75 AIALDFHHRRELVFWSDVTLDRILRANLN  103 (349)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             eEEEEEeccccEEEEEeccCCceEEEecC
Confidence            3445555433322 233334555555443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=89.68  E-value=3  Score=36.92  Aligned_cols=68  Identities=7%  Similarity=0.049  Sum_probs=35.1

Q ss_pred             EEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEE-EeeCCCeEEEEeC
Q psy16881        122 TSVRFNHKSSLLVSGSV--DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA-SGSNDKTVTIWDM  189 (222)
Q Consensus       122 ~~l~~~~~~~~l~sg~~--dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~-s~s~D~~i~lwd~  189 (222)
                      ..++++|.+..|+.+..  .+.|.+.++........+...-.....++|++++..|+ +-+..+.|..+|+
T Consensus       499 ~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~  569 (699)
T 1n7d_A          499 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  569 (699)
T ss_dssp             CCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECS
T ss_pred             ceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEcc
Confidence            45667776554444433  25666666542211111111122345688887654444 4445567777776

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=89.55  E-value=11  Score=33.80  Aligned_cols=68  Identities=9%  Similarity=-0.013  Sum_probs=28.5

Q ss_pred             EEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeC-C-CeEEEEeC
Q psy16881        122 TSVRFNHKSSLLV-SGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN-D-KTVTIWDM  189 (222)
Q Consensus       122 ~~l~~~~~~~~l~-sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~-D-~~i~lwd~  189 (222)
                      ..|+++..++.|+ +-...+.|.+.++........+...-.....++++|....|+.+-+ . ..|...++
T Consensus       474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~  544 (791)
T 3m0c_C          474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  544 (791)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence            3455554443333 3333455656655432222222222233555666655444433321 1 34444444

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=89.38  E-value=2.1  Score=35.65  Aligned_cols=70  Identities=20%  Similarity=0.156  Sum_probs=50.4

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc------------eEEEecc------CCccEEEEEEcCC---CCEEEEe
Q psy16881        120 AVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT------------CIKTLES------HTRYVTCCTFSCD---DSLLASG  178 (222)
Q Consensus       120 ~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~------------~~~~~~~------~~~~V~~~~~s~~---~~~l~s~  178 (222)
                      .|..+..+|+|++++..+. ..|.|-.+..+.            ..+.+..      ....|..+.|||-   +..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            4556889999998888764 578887775211            1122221      2467999999985   5688888


Q ss_pred             eCCCeEEEEeCC
Q psy16881        179 SNDKTVTIWDML  190 (222)
Q Consensus       179 s~D~~i~lwd~~  190 (222)
                      ..|++|++||+.
T Consensus       146 tsD~~Ir~yDl~  157 (452)
T 3pbp_A          146 KEDDTITMFDIL  157 (452)
T ss_dssp             ETTSCEEEEETT
T ss_pred             ecCCEEEEEEcc
Confidence            999999999985

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=89.28  E-value=7  Score=31.26  Aligned_cols=27  Identities=11%  Similarity=-0.020  Sum_probs=20.9

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEe
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWR   55 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd   55 (222)
                      .....++|.|+|+++++ ..+|+|++++
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d   55 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS   55 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEEC
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEe
Confidence            44678999999986555 5669998886

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=88.74  E-value=8  Score=30.93  Aligned_cols=65  Identities=6%  Similarity=0.064  Sum_probs=41.2

Q ss_pred             EEEEE---cCCCCEEEEEe-------------CCCcEEEEeCC---CCceEEEec--c-----------CCccEEEEEEc
Q psy16881        122 TSVRF---NHKSSLLVSGS-------------VDKTVKLWDVP---SLTCIKTLE--S-----------HTRYVTCCTFS  169 (222)
Q Consensus       122 ~~l~~---~~~~~~l~sg~-------------~dg~I~iwd~~---~~~~~~~~~--~-----------~~~~V~~~~~s  169 (222)
                      ..+.+   ++++++++...             .++.|..+|+.   +++.+....  .           -......++.+
T Consensus        66 sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD  145 (334)
T 2p9w_A           66 SGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD  145 (334)
T ss_dssp             EEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC
T ss_pred             eEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC
Confidence            56777   56666655433             25778899988   676654332  1           11236789999


Q ss_pred             CCCCEEEEeeCC-CeEEE
Q psy16881        170 CDDSLLASGSND-KTVTI  186 (222)
Q Consensus       170 ~~~~~l~s~s~D-~~i~l  186 (222)
                      ++|+.-++++.. +.|..
T Consensus       146 ~~GnaYVt~s~~~~~I~r  163 (334)
T 2p9w_A          146 RDGNSYVAFALGMPAIAR  163 (334)
T ss_dssp             TTSCEEEEEEESSCEEEE
T ss_pred             CCCCEEEeCCCCCCeEEE
Confidence            999988877766 44333

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=88.72  E-value=8.6  Score=31.28  Aligned_cols=71  Identities=7%  Similarity=-0.004  Sum_probs=43.8

Q ss_pred             CEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEe-eCCCeEEEEeCC
Q psy16881        120 AVTSVRFNHKSSLLVSGSV--DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG-SNDKTVTIWDML  190 (222)
Q Consensus       120 ~i~~l~~~~~~~~l~sg~~--dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~-s~D~~i~lwd~~  190 (222)
                      ....|+++|.+..|+-...  .+.|...++........+...-.....+++++++..|+.+ +....|..+|+.
T Consensus       203 ~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d  276 (400)
T 3p5b_L          203 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  276 (400)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence            3567888887666555543  3677777775332222223333457789999877766655 345678777763

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=87.77  E-value=7.6  Score=29.68  Aligned_cols=72  Identities=14%  Similarity=0.170  Sum_probs=47.6

Q ss_pred             ccCCCEEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCceEEEecc-CCccEEEEEEcCCCCEEEEeeCCCeEEEEe
Q psy16881        116 RHTSAVTSVRFNHKSSLLVS-GSVDKTVKLWDVPSLTCIKTLES-HTRYVTCCTFSCDDSLLASGSNDKTVTIWD  188 (222)
Q Consensus       116 ~h~~~i~~l~~~~~~~~l~s-g~~dg~I~iwd~~~~~~~~~~~~-~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd  188 (222)
                      +-...+..++|+|+++.+++ ...++.|...|.. ++.+..+.. .......+++.+++.++++.-.++.+.+++
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~   97 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS   97 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence            33456889999998775554 6667788888987 777766532 123467788887777655533444555554

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=87.29  E-value=13  Score=31.54  Aligned_cols=32  Identities=13%  Similarity=0.103  Sum_probs=19.0

Q ss_pred             eEEEEEcCC-CCeE-EEecCCCeEEEEeCCCCce
Q psy16881         30 MRCVRFSPD-TRLL-ATGGDDETVTVWRSDDLSL   61 (222)
Q Consensus        30 v~~l~~spd-g~~l-~tgs~Dg~i~iwd~~~~~~   61 (222)
                      ...|+|+|. +..| ++-...+.|++.|+++..+
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v  174 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML  174 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE
Confidence            567889883 4444 4433346677777765443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=86.18  E-value=1.4  Score=38.97  Aligned_cols=67  Identities=7%  Similarity=-0.012  Sum_probs=33.8

Q ss_pred             EEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeC-C-CeEEEEeC
Q psy16881        123 SVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN-D-KTVTIWDM  189 (222)
Q Consensus       123 ~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~-D-~~i~lwd~  189 (222)
                      .+++++.+ +++++-...+.|.+.++........+...-.....++++|.+..|+.+.. . +.|..+++
T Consensus       457 glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~  526 (699)
T 1n7d_A          457 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  526 (699)
T ss_dssp             CEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS
T ss_pred             eEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC
Confidence            45666444 33344345667888887644332222222233456778876554444332 2 45655554

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=84.80  E-value=17  Score=30.74  Aligned_cols=67  Identities=9%  Similarity=-0.033  Sum_probs=43.2

Q ss_pred             EEEEEcCCCC-EEEEEeCCCcEEEEeCC-------CCce--------------EEEeccCCccEEEEEEcCCCCEEE-Ee
Q psy16881        122 TSVRFNHKSS-LLVSGSVDKTVKLWDVP-------SLTC--------------IKTLESHTRYVTCCTFSCDDSLLA-SG  178 (222)
Q Consensus       122 ~~l~~~~~~~-~l~sg~~dg~I~iwd~~-------~~~~--------------~~~~~~~~~~V~~~~~s~~~~~l~-s~  178 (222)
                      ..++++|++. ++++-..++.|..+|+.       ++..              +... +.......++|+|+|+.|+ +=
T Consensus       250 ~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD  328 (496)
T 3kya_A          250 NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGV  328 (496)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEE
T ss_pred             eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEe
Confidence            3567888554 55555667789999986       4432              1222 2234457899999999544 44


Q ss_pred             eCCCeEEEEeC
Q psy16881        179 SNDKTVTIWDM  189 (222)
Q Consensus       179 s~D~~i~lwd~  189 (222)
                      +....|+.++.
T Consensus       329 ~~~h~I~kid~  339 (496)
T 3kya_A          329 INNHYFMRSDY  339 (496)
T ss_dssp             TTTTEEEEEEE
T ss_pred             CCCCEEEEEec
Confidence            56678888654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=84.28  E-value=15  Score=29.62  Aligned_cols=72  Identities=3%  Similarity=-0.050  Sum_probs=45.4

Q ss_pred             CCEEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEe-eCCCeEEEEeCC
Q psy16881        119 SAVTSVRFNHKSSLLVSGSV-D-KTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG-SNDKTVTIWDML  190 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~sg~~-d-g~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~-s~D~~i~lwd~~  190 (222)
                      .....++++|.+..|+.+.. . +.|...+.............-.....+++++++..|+.+ +..+.|..+|+.
T Consensus       202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d  276 (386)
T 3v65_B          202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  276 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred             CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            45678999987776665554 3 567777775332222222333456789999876666544 455678888864

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=84.15  E-value=13  Score=29.05  Aligned_cols=68  Identities=4%  Similarity=-0.060  Sum_probs=34.4

Q ss_pred             EEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeC--CCeEEEEeC
Q psy16881        122 TSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN--DKTVTIWDM  189 (222)
Q Consensus       122 ~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~--D~~i~lwd~  189 (222)
                      ..+++++.+. ++++-...+.|.+.++........+...-.....++++|.+..|+.+..  .+.|...++
T Consensus        82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~  152 (318)
T 3sov_A           82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM  152 (318)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEET
T ss_pred             cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEc
Confidence            4566665443 3344444566777776533222222233344567777776555544432  345555554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=83.93  E-value=8.5  Score=31.65  Aligned_cols=71  Identities=11%  Similarity=0.096  Sum_probs=41.6

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCC-C----cEEEEeCCCCceE--EEeccCCccEEEEEEcC-CCCEEEEeeCCCeEEEEeC
Q psy16881        118 TSAVTSVRFNHKSSLLVSGSVD-K----TVKLWDVPSLTCI--KTLESHTRYVTCCTFSC-DDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~sg~~d-g----~I~iwd~~~~~~~--~~~~~~~~~V~~~~~s~-~~~~l~s~s~D~~i~lwd~  189 (222)
                      ......++++++++.|+.+... +    .+.+.+ ..+...  ..+.. -.....++++| ++.++++-..++.|..++.
T Consensus       178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~  255 (430)
T 3tc9_A          178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDF  255 (430)
T ss_dssp             CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred             CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence            3456789999999966666542 2    232333 222211  22221 12245678999 6777777667778888886


Q ss_pred             C
Q psy16881        190 L  190 (222)
Q Consensus       190 ~  190 (222)
                      .
T Consensus       256 ~  256 (430)
T 3tc9_A          256 T  256 (430)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=83.92  E-value=23  Score=31.46  Aligned_cols=71  Identities=13%  Similarity=0.152  Sum_probs=48.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec--------cCCccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881        118 TSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE--------SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~--------~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      ...|.++..+++|++. .|+.++-|..||..+++...-..        .....|.++..+.+++.|..|+.++-+..+|.
T Consensus       356 ~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~  434 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR  434 (795)
T ss_dssp             CSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred             CCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence            3468899888887754 47777788899987654432211        12356899999888884555666566777764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=82.39  E-value=13  Score=27.71  Aligned_cols=71  Identities=17%  Similarity=0.094  Sum_probs=44.3

Q ss_pred             CCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCCC
Q psy16881        119 SAVTSVRFNHKSSLLVSGS-VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA  191 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~  191 (222)
                      .....++++++++.|+.+. ..+.|.++|.........+.. -.....++++ .+.++++....+.|..+|..+
T Consensus       167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~  238 (267)
T 1npe_A          167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAI  238 (267)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred             CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCC
Confidence            3467899999877665554 567899999875433333332 2334566665 344444444567899998853

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=81.72  E-value=17  Score=28.32  Aligned_cols=70  Identities=10%  Similarity=-0.006  Sum_probs=43.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCceEEEe-ccCCccEEEEEEcCCCCEEEEe-eCCCeEEEEeCC
Q psy16881        120 AVTSVRFNHKSSLLVSGSVD--KTVKLWDVPSLTCIKTL-ESHTRYVTCCTFSCDDSLLASG-SNDKTVTIWDML  190 (222)
Q Consensus       120 ~i~~l~~~~~~~~l~sg~~d--g~I~iwd~~~~~~~~~~-~~~~~~V~~~~~s~~~~~l~s~-s~D~~i~lwd~~  190 (222)
                      ....++++|.+..++.+...  +.|...+.. +.....+ ...-.....+++++++..|+.+ +..+.|..+|+.
T Consensus       121 ~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d  194 (316)
T 1ijq_A          121 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (316)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence            45678888876655555543  577777764 3333322 2223456789999877666544 445678888864

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=81.59  E-value=13  Score=32.31  Aligned_cols=59  Identities=15%  Similarity=0.166  Sum_probs=37.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----------ceEEEeccCCccEEEEE-----EcCCCCEEEEee
Q psy16881        121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSL----------TCIKTLESHTRYVTCCT-----FSCDDSLLASGS  179 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~----------~~~~~~~~~~~~V~~~~-----~s~~~~~l~s~s  179 (222)
                      ....+|+++|+-..|--.|..|-.|++...          ..+.++..|.++-.-.+     -.++|++|++..
T Consensus       380 PlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          380 PLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             ccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            355789998854555557999999998642          34556666655433222     246777777743

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=81.44  E-value=18  Score=28.69  Aligned_cols=29  Identities=14%  Similarity=0.279  Sum_probs=21.8

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeC
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRS   56 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~   56 (222)
                      .....++|.|+|++|+++...|+|++++.
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~   46 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQA   46 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence            44678999999993444567899988874

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=81.32  E-value=18  Score=28.59  Aligned_cols=70  Identities=3%  Similarity=-0.004  Sum_probs=42.3

Q ss_pred             CEEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCceEEEe-ccCCccEEEEEEcCCCCEEEEe-eCCCeEEEEeCC
Q psy16881        120 AVTSVRFNHKSSLLVSGSV-D-KTVKLWDVPSLTCIKTL-ESHTRYVTCCTFSCDDSLLASG-SNDKTVTIWDML  190 (222)
Q Consensus       120 ~i~~l~~~~~~~~l~sg~~-d-g~I~iwd~~~~~~~~~~-~~~~~~V~~~~~s~~~~~l~s~-s~D~~i~lwd~~  190 (222)
                      ....++++|.+..++.... . +.|...++... ....+ ...-.....+++++++..|+.+ +..+.|..+|+.
T Consensus       160 ~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          160 KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  233 (349)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            4577888886665554443 3 66777776532 22222 2223346789999876666544 445678888764

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.45  E-value=3.2  Score=38.17  Aligned_cols=37  Identities=27%  Similarity=0.452  Sum_probs=31.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe
Q psy16881        120 AVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL  156 (222)
Q Consensus       120 ~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~  156 (222)
                      .+.++...++..++++-+.|+++|||++.+++++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4666777777789999999999999999999988764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=80.26  E-value=21  Score=28.59  Aligned_cols=31  Identities=19%  Similarity=0.202  Sum_probs=24.3

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCC
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDD   58 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~   58 (222)
                      .....++|.|||+++++--..|+|++++..+
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~   62 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKT   62 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCC
Confidence            4567899999999877765589998887543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	222
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-23
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-19
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-16
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-15
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.003
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.004
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	8e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	7e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.001
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.004

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.5 bits (228), Expect = 5e-23
 Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 13/174 (7%)

Query: 28  SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLC 87
             +R VR + D  L+A+  +D+TV VW         E  +  H    I          + 
Sbjct: 144 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 203

Query: 88  RTRVFSTFVKQIIPTRVGVYGQDSE-------------TVGRHTSAVTSVRFNHKSSLLV 134
                 T         +    +D               T+  H + V  V F+     ++
Sbjct: 204 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL 263

Query: 135 SGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
           S + DKT+++WD  +  C+KTL +H  +VT   F      + +GS D+TV +W+
Sbjct: 264 SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.1 bits (162), Expect = 7e-14
 Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 7/159 (4%)

Query: 31  RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTR 90
             V F P   ++ +  +D T+ VW  +          +GHT        +  +       
Sbjct: 21  TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL--KGHT-----DSVQDISFDHSGKL 73

Query: 91  VFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL 150
           + S      I        +   T+  H   V+SV        +VS S DKT+K+W+V + 
Sbjct: 74  LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133

Query: 151 TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
            C+KT   H  +V     + D +L+AS SND+TV +W +
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (139), Expect = 9e-11
 Identities = 21/54 (38%), Positives = 30/54 (55%)

Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSC 170
           H S VT V F+   S++VS S D T+K+WD  +    +TL+ HT  V   +F  
Sbjct: 16  HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.4 bits (116), Expect = 7e-08
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 143 KLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
           K W  P       L  H   VT   F    S++ S S D T+ +WD 
Sbjct: 1   KEWI-PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY 46

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.5 bits (202), Expect = 3e-19
 Identities = 31/161 (19%), Positives = 50/161 (31%), Gaps = 47/161 (29%)

Query: 28  SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLC 87
           S++  + F P+    ATG DD T  ++       +M  +                     
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD------------------- 267

Query: 88  RTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV 147
                                            +TSV F+    LL++G  D    +WD 
Sbjct: 268 ----------------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299

Query: 148 PSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
                   L  H   V+C   + D   +A+GS D  + IW+
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.2 bits (165), Expect = 3e-14
 Identities = 45/242 (18%), Positives = 75/242 (30%), Gaps = 63/242 (26%)

Query: 31  RCVRFSPDTRLLATGGDDETVTVWRSDDLSLI---------------------------- 62
             + +  D+RLL +   D  + +W S   + +                            
Sbjct: 59  YAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD 118

Query: 63  ----------METNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSE 112
                      E N R   +             L   ++ ++             GQ + 
Sbjct: 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT 178

Query: 113 TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD 172
           T   HT  V S+     + L VSG+ D + KLWDV    C +T   H   +    F  + 
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238

Query: 173 SLLASGSNDKTVTIWDMLA-------------------------TLLASGSNDKTVTIWD 207
           +  A+GS+D T  ++D+ A                          LL +G +D    +WD
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298

Query: 208 MR 209
             
Sbjct: 299 AL 300

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.1 bits (162), Expect = 8e-14
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 25/116 (21%)

Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRY--VTCCTFSCDDSL 174
           H S + ++ F    +   +GS D T +L+D+ +   + T         +T  +FS    L
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284

Query: 175 LASGSNDKTVTIWDMLA-----------------------TLLASGSNDKTVTIWD 207
           L +G +D    +WD L                          +A+GS D  + IW+
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.8 bits (125), Expect = 6e-09
 Identities = 16/73 (21%), Positives = 36/73 (49%)

Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
           H + + ++ +   S LLVS S D  + +WD  +   +  +   + +V  C ++   + +A
Sbjct: 54  HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113

Query: 177 SGSNDKTVTIWDM 189
            G  D   +I+++
Sbjct: 114 CGGLDNICSIYNL 126

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.8 bits (99), Expect = 1e-05
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 150 LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
           +   +TL  H   +    +  D  LL S S D  + IWD 
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS 84

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.6 bits (184), Expect = 1e-16
 Identities = 28/165 (16%), Positives = 49/165 (29%), Gaps = 43/165 (26%)

Query: 31  RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTR 90
             V F+ D + + +G  D +V +W   + +   ++         +               
Sbjct: 258 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI------------ 305

Query: 91  VFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL 150
                                     H   V SV        ++SGS D+ V  WD  S 
Sbjct: 306 -------------------------GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 340

Query: 151 TCIKTLESHTRYVTCC------TFSCDDSLLASGSNDKTVTIWDM 189
             +  L+ H   V         +   + ++ A+GS D    IW  
Sbjct: 341 NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 4e-11
 Identities = 46/245 (18%), Positives = 83/245 (33%), Gaps = 49/245 (20%)

Query: 7   GDGPSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETN 66
            D  +  +   L    S      +R V FSPD + LATG +D  + +W  ++  ++M   
Sbjct: 101 DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ 160

Query: 67  DRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRF 126
                   ++ +                   + +       GQ S T+       T    
Sbjct: 161 GHEQDIYSLDYFPSGDKLVSGSGD-------RTVRIWDLRTGQCSLTLSIEDGVTTVAVS 213

Query: 127 NHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES-------HTRYVTCCTFSCDDSLLASGS 179
                 + +GS+D+ V++WD  +   ++ L+S       H   V    F+ D   + SGS
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273

Query: 180 NDKTVTIWDMLA-----------------------------------TLLASGSNDKTVT 204
            D++V +W++                                       + SGS D+ V 
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333

Query: 205 IWDMR 209
            WD +
Sbjct: 334 FWDKK 338

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.9 bits (107), Expect = 1e-06
 Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 12/191 (6%)

Query: 10  PSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETND-- 67
           P+L    ++ L  S+   S + CV+FS D   LATG +  T  V+R  D SL+   +D  
Sbjct: 45  PALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNK-TTQVYRVSDGSLVARLSDDS 103

Query: 68  ---------RGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHT 118
                       +    + + R          + +    ++I        +    +  H 
Sbjct: 104 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE 163

Query: 119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG 178
             + S+ +      LVSGS D+TV++WD+ +  C  TL       T      D   +A+G
Sbjct: 164 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAG 223

Query: 179 SNDKTVTIWDM 189
           S D+ V +WD 
Sbjct: 224 SLDRAVRVWDS 234

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.9 bits (94), Expect = 6e-05
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 133 LVSGSVDKTVKLWD-----VPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW 187
            +    +    L++        +   K+L+ HT  V C  FS D   LA+G  +KT  ++
Sbjct: 31  ALKKQTNDYYILYNPALPREIDVELHKSLD-HTSVVCCVKFSNDGEYLATGC-NKTTQVY 88

Query: 188 DM 189
            +
Sbjct: 89  RV 90

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (178), Expect = 4e-16
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
           H S V S++F +     VS   D  +  W  P    I   +  +  V  C  S DD  + 
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIV 322

Query: 177 SGSNDKTVTIWDML 190
           +GS DK  T+++++
Sbjct: 323 TGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 7e-10
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE-----SHTRYVTCCTFSCD 171
           H   V +V  ++ +  + +G     VK+WD+        +      +   Y+  C    D
Sbjct: 50  HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108

Query: 172 DSLLASGSNDKTVTIWDM 189
              L  G    T++IWD+
Sbjct: 109 GCTLIVGGEASTLSIWDL 126

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 1e-07
 Identities = 15/119 (12%), Positives = 35/119 (29%), Gaps = 50/119 (42%)

Query: 29  NMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCR 88
            +  ++F+   +   + G D  +  WR+   + I ++                       
Sbjct: 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----------------------- 303

Query: 89  TRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV 147
                                      + +S+V S   +     +V+GS DK   +++V
Sbjct: 304 ---------------------------KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 2/58 (3%)

Query: 132 LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
             V    D  +          I TL +H   V   T S     + +G     V +WD+
Sbjct: 24  QPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDI 79

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 9e-05
 Identities = 30/258 (11%), Positives = 60/258 (23%), Gaps = 59/258 (22%)

Query: 8   DGPSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETND 67
           D     N + +     ++  + +R  +  PD   L  GG+  T+++W     +  ++   
Sbjct: 78  DISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137

Query: 68  RGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHT--------- 118
                          +                +  +  V      T G            
Sbjct: 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197

Query: 119 ---------------------------SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
                                      S + S+ +      L  G     V++  V    
Sbjct: 198 LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD 257

Query: 152 CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML--------------------- 190
             +    H   V    F+       S   D  +  W                        
Sbjct: 258 KYQL-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV 316

Query: 191 -ATLLASGSNDKTVTIWD 207
               + +GS DK  T+++
Sbjct: 317 DDKYIVTGSGDKKATVYE 334

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.7 bits (171), Expect = 5e-15
 Identities = 9/75 (12%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS--LTCIKTLESHTRYVTCCTFSCDDSL 174
               ++   +N   + +     +  V +++        +  L+ H   VT   ++ D + 
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 175 LASGSNDKTVTIWDM 189
           + +   D+   +W +
Sbjct: 66  IVTCGTDRNAYVWTL 80

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.8 bits (109), Expect = 6e-07
 Identities = 15/140 (10%), Positives = 31/140 (22%), Gaps = 47/140 (33%)

Query: 31  RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTR 90
            C  ++ D   +A   ++  V ++       +     + H                    
Sbjct: 11  SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN------------------- 51

Query: 91  VFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL 150
                                         VT V +   S+ +V+   D+   +W +   
Sbjct: 52  ----------------------------GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 83

Query: 151 TCIKTLESHTRYVTCCTFSC 170
           T   TL              
Sbjct: 84  TWKPTLVILRINRAARCVRW 103

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.4 bits (108), Expect = 9e-07
 Identities = 28/179 (15%), Positives = 50/179 (27%), Gaps = 2/179 (1%)

Query: 31  RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTR 90
             V ++PD+  + T G D    VW +        T                P        
Sbjct: 55  TGVDWAPDSNRIVTCGTDRNAYVW-TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVG 113

Query: 91  VFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL 150
             S  +      +   +           S V S+ ++  S LL +GS D   +++     
Sbjct: 114 SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK 173

Query: 151 TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMR 209
              +                     +S      V  +    + +A  S+D TV + D  
Sbjct: 174 EVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC-FSANGSRVAWVSHDSTVCLADAD 231

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 13/130 (10%)

Query: 25  HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPAC 84
                +  V F  ++ L+A G D   V ++  D  +  +         GR++   +    
Sbjct: 241 SETLPLLAVTFITESSLVAAGHDCFPV-LFTYDSAAGKLSF------GGRLDVPKQSSQR 293

Query: 85  PLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRF----NHKSSLLVSGSVDK 140
            L     F    K+         G   +++  H ++V+ +        K S   +  +D 
Sbjct: 294 GLTARERFQNLDKKASSEGSAAAGAGLDSL--HKNSVSQISVLSGGKAKCSQFCTTGMDG 351

Query: 141 TVKLWDVPSL 150
            + +WDV SL
Sbjct: 352 GMSIWDVRSL 361

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 24/189 (12%), Positives = 44/189 (23%), Gaps = 27/189 (14%)

Query: 47  DDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV 106
             E             M   +         GW          +RV        +      
Sbjct: 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231

Query: 107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCC 166
                 T+   T  + +V F  +SSL+ +G  D    L+   S     +           
Sbjct: 232 KKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQS 290

Query: 167 TFSCDDSLLASGSNDKTVTIWD--------------------------MLATLLASGSND 200
           +     +     + DK  +                                +   +   D
Sbjct: 291 SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD 350

Query: 201 KTVTIWDMR 209
             ++IWD+R
Sbjct: 351 GGMSIWDVR 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 62.2 bits (149), Expect = 5e-12
 Identities = 22/188 (11%), Positives = 46/188 (24%), Gaps = 17/188 (9%)

Query: 29  NMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHT----QGRIEGWGRVPAC 84
           +     F  D++ L                L+   E   +        G       VP  
Sbjct: 180 HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS 239

Query: 85  PLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSL---LVSGSVDKT 141
                  +         + + V   D   +    S++                       
Sbjct: 240 MTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV 299

Query: 142 VKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDK 201
           +  +DV +    + +      +T    S D   +    +D  +  +      L    +++
Sbjct: 300 LLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFP-----LEKPEDER 350

Query: 202 TVTIWDMR 209
           TV   D R
Sbjct: 351 TVET-DKR 357

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 43.7 bits (101), Expect = 6e-06
 Identities = 18/166 (10%), Positives = 31/166 (18%), Gaps = 5/166 (3%)

Query: 27  GSNMRCVRFSPDTRLLATGGDDETVTVWRSDD----LSLIMETNDRGHTQGRIEGWGRVP 82
              +R VR   DT++    G  E   +   D          E        G         
Sbjct: 42  PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAV 101

Query: 83  ACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTV 142
                   +                           ++               G V + +
Sbjct: 102 VANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 161

Query: 143 KLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
            ++D+              +     F  D   L   S        D
Sbjct: 162 HVYDMEGRKIFAATT-ENSHDYAPAFDADSKNLYYLSYRSLDPSPD 206

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (143), Expect = 3e-11
 Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE---SHTRYVTCCTFSCDDS 173
               ++ ++     SLL+  S D ++ ++          L     +   + CC F  +  
Sbjct: 10  PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69

Query: 174 -LLASGSNDKTVTIWDM 189
             +  G+    +   D+
Sbjct: 70  LQIYVGTVQGEILKVDL 86

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 3e-11
 Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 2/92 (2%)

Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
               V S+ F+ +   L +   D  +  W++ +   IK         +    +C D++L 
Sbjct: 250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDNILC 308

Query: 177 SGSNDKTVTIWDMLATLLASGSNDKTVTIWDM 208
             ++D T      +   +   +      I+D 
Sbjct: 309 LATSDDTFKTNAAIDQTIE-LNASSIYIIFDY 339

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 3e-07
 Identities = 7/40 (17%), Positives = 18/40 (45%)

Query: 150 LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
           +  ++  ++   Y++        SLL   S D ++T++  
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKF 40

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 7/45 (15%), Positives = 18/45 (40%)

Query: 31 RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRI 75
            ++  P   LL     D ++TV++ D  +  ++       +  +
Sbjct: 15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 13/130 (10%), Positives = 25/130 (19%), Gaps = 37/130 (28%)

Query: 115 GRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES---------------H 159
           G             +       S+D  V +                              
Sbjct: 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250

Query: 160 TRYVTCCTFSCDDSLLASGSNDKTVTIWDM-----LATL-----------------LASG 197
              V    FS     L +  +D  ++ W++     +                    L   
Sbjct: 251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLA 310

Query: 198 SNDKTVTIWD 207
           ++D T     
Sbjct: 311 TSDDTFKTNA 320

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 59.5 bits (142), Expect = 3e-11
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 126 FNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRY-VTCCTFSCDDSLLASGSNDKTV 184
           ++   + + S S DKT+K+W+V +L   KT+   TR              L S S +  +
Sbjct: 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 305

Query: 185 TIWDM 189
              + 
Sbjct: 306 NFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.8 bits (122), Expect = 1e-08
 Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 1/69 (1%)

Query: 121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN 180
              +        +   +   +V    V SLT  +    H+   T    S      ASG  
Sbjct: 20  AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78

Query: 181 DKTVTIWDM 189
              V IWD 
Sbjct: 79  HGNVRIWDT 87

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 47/249 (18%), Positives = 74/249 (29%), Gaps = 71/249 (28%)

Query: 31  RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGH-------------------- 70
              + SP     A+G     V +W +   + I++T                         
Sbjct: 62  TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVG 121

Query: 71  --------------------TQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQD 110
                                 G+      V   P    R+ S      +    G   + 
Sbjct: 122 EGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF 181

Query: 111 SETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKT-------LESHTRYV 163
             T G HT  V SVR+N   SL  S   D T+ L++    T             +H+  V
Sbjct: 182 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV 241

Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM-----LATL-------------------LASGSN 199
              T+S D + +AS S DKT+ IW++       T+                   L S S 
Sbjct: 242 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 301

Query: 200 DKTVTIWDM 208
           +  +   + 
Sbjct: 302 NGFINFVNP 310

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 2e-10
 Identities = 37/171 (21%), Positives = 63/171 (36%), Gaps = 17/171 (9%)

Query: 27  GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPL 86
           G   R      D   + +G  D ++ VW  +  + I            +E    +     
Sbjct: 175 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGN 234

Query: 87  CRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWD 146
             + V       I   + G   Q  +   +H SAVT ++FN   + +++ S D TVKLWD
Sbjct: 235 ADSTVK------IWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWD 286

Query: 147 VPSLTCIKTLES-----HTRYVTCCTFSCDDSLLASGSNDKT----VTIWD 188
           + +   I+ L +         V     S    + A GS + T    + + D
Sbjct: 287 LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 1e-09
 Identities = 53/256 (20%), Positives = 84/256 (32%), Gaps = 60/256 (23%)

Query: 19  ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLI---------------- 62
           +L+G  H    + C         + +G DD T+ VW +     +                
Sbjct: 11  VLKG--HDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 66

Query: 63  ---------------METNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY 107
                                            V    L   RV S      +       
Sbjct: 67  DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 126

Query: 108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCT 167
           GQ    +  H +AV  V+++ +   +VSG+ D  VK+WD  + TC+ TL+ HT  V    
Sbjct: 127 GQCLHVLMGHVAAVRCVQYDGRR--VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 184

Query: 168 FSCDDSLLASGSNDKTVTIWDMLA---------------------TLLASGSNDKTVTIW 206
           F  D   + SGS D ++ +WD+                        +L SG+ D TV IW
Sbjct: 185 F--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 242

Query: 207 DMRGNLSVDVPLNYCC 222
           D++    +        
Sbjct: 243 DIKTGQCLQTLQGPNK 258

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 2e-08
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 145 WDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
           W    L   K L+ H  +V  C      + + SGS+D T+ +W  
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSA 44

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 2e-07
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 26/108 (24%)

Query: 126 FNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT 185
                  +VSGS+D ++++WDV +  CI TL  H    +       D++L SG+ D TV 
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVK 240

Query: 186 IWDMLA------------------------TLLASGSNDKTVTIWDMR 209
           IWD+                            + + S+D TV +WD++
Sbjct: 241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 2e-10
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 126 FNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSC---DDSLLASGSNDK 182
               S    +   D T+++WDV +  C++      + +           +  + S S D 
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

Query: 183 TVTIWDM 189
           T+  +++
Sbjct: 319 TLNFYEL 325

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 2e-10
 Identities = 17/130 (13%), Positives = 43/130 (33%), Gaps = 25/130 (19%)

Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
           H ++V +     + + +++G+ DK ++++D  +   +  L  H   V    ++    L++
Sbjct: 11  HMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 69

Query: 177 SG------------------------SNDKTVTIWDMLATLLASGSNDKTVTIWDMRGNL 212
                                     +      +       + +GS D T+ +W +    
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129

Query: 213 SVDVPLNYCC 222
           SV        
Sbjct: 130 SVPDHGEEHD 139

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 3e-09
 Identities = 17/136 (12%), Positives = 42/136 (30%), Gaps = 3/136 (2%)

Query: 54  WRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSET 113
             S D ++ +   + G     ++G   +        +   +                 + 
Sbjct: 218 SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF 277

Query: 114 VGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIK-TLESHTRYVTCCTFSCDD 172
              HT+      F    ++LVSGS +    ++++ S   +   +      +    F    
Sbjct: 278 SYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GK 335

Query: 173 SLLASGSNDKTVTIWD 188
           +L+A+   D    +  
Sbjct: 336 TLVAAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 6e-06
 Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 18/195 (9%)

Query: 20  LRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWG 79
           LRG  H+ S + C     +   + TG DD+ + V+ S +   +++    GH        G
Sbjct: 8   LRG--HMTSVITC--LQFEDNYVITGADDKMIRVYDSINKKFLLQL--SGHD-------G 54

Query: 80  RVPACPLCRTRVF---STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSG 136
            V A       +    ST     +                 T     +        +V+G
Sbjct: 55  GVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG 114

Query: 137 SVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS--LLASGSNDKTVTIWDMLATLL 194
           S D T+ +W +P  + +        Y        ++   +     +  +V        ++
Sbjct: 115 SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIV 174

Query: 195 ASGSNDKTVTIWDMR 209
            SGS D T+ +WD+ 
Sbjct: 175 VSGSYDNTLIVWDVA 189

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 6e-05
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 155 TLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
           TL  H   V  C    +D+ + +G++DK + ++D 
Sbjct: 7   TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDS 40

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 5e-10
 Identities = 32/211 (15%), Positives = 54/211 (25%), Gaps = 28/211 (13%)

Query: 27  GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRG---------------HT 71
                 V  S    L+ATG ++ TV +     L  +     +                  
Sbjct: 184 SQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242

Query: 72  QGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS 131
              +       +             +    +      Q S     H+S V S+ FN    
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302

Query: 132 LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV----TCCTFSCDDSLLASGSNDKTVTIW 187
            L S   D  ++ WDV +   I TL  H   +               LA         + 
Sbjct: 303 TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK 362

Query: 188 DMLAT--------LLASGSNDKTVTIWDMRG 210
               +         L     D+++  +   G
Sbjct: 363 KGWRSGMGADLNESLCCVCLDRSIRWFREAG 393

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 7e-09
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
           H + + SV   +     VS S D  +K+WD       K L++        +     S L 
Sbjct: 13  HDADIFSVSACNS--FTVSCSGDGYLKVWD------NKLLDNENPKDKSYSHFVHKSGLH 64

Query: 177 SGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRGN 211
                + +        L+A+ S    +  + +   
Sbjct: 65  HVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE 99

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 15/182 (8%), Positives = 35/182 (19%), Gaps = 44/182 (24%)

Query: 31  RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTR 90
             V          +   D  + VW   D  L+   N +  +         +         
Sbjct: 18  FSVSACNSF--TVSCSGDGYLKVW---DNKLLDNENPKDKSYSHFVHKSGL--------- 63

Query: 91  VFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPS 149
                                     H   + ++  +  +  L+ + S    +  + +  
Sbjct: 64  -------------------------HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR 98

Query: 150 LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMR 209
               K +      +                      +       L +     T  IW   
Sbjct: 99  EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHR----LVATDVKGTTYIWKFH 154

Query: 210 GN 211
             
Sbjct: 155 PF 156

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 5e-04
 Identities = 19/183 (10%), Positives = 56/183 (30%), Gaps = 18/183 (9%)

Query: 8   DGPSLFNGTELILRGSVHIGSNMRCV-RFSPDTRLLATGGDDETVTVWRSDDLSLIMETN 66
           + P   + +  + +  +H    ++ + R + +  L+AT      +  +R           
Sbjct: 47  ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYR---------IT 97

Query: 67  DRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRF 126
               T+  I     +    + +   ++               +        T    +   
Sbjct: 98  REDETKKVIFEKLDLLDSDMKKHSFWA-------LKWGASNDRLLSHRLVATDVKGTTYI 150

Query: 127 NHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI 186
                     +         +     +++  + +++ T    S +  L+A+G N+ TV I
Sbjct: 151 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERGLIATGFNNGTVQI 209

Query: 187 WDM 189
            ++
Sbjct: 210 SEL 212

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.0 bits (130), Expect = 1e-09
 Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 1/73 (1%)

Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL-ESHTRYVTCCTFSCDDSLL 175
           H  A+T++  +     L S   +  +  WD+ +    +   + H   +T    +    L 
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70

Query: 176 ASGSNDKTVTIWD 188
               +D    +  
Sbjct: 71  TVSWDDHLKVVPA 83

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.9 bits (122), Expect = 1e-08
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 134 VSGSVDKTVKLWDV--PSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
            +GS+D +V +W++  PS   I    +H           +++ + S   D  +  W+
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.3 bits (110), Expect = 3e-07
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 151 TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
           +  +    H + +T  + S D   L S   +  +  WD+
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 41

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.7 bits (85), Expect = 6e-04
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query: 113 TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP 148
             G H  +  +       + +VS   D  +K W+VP
Sbjct: 263 IKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.3 bits (79), Expect = 0.004
 Identities = 6/43 (13%), Positives = 11/43 (25%), Gaps = 1/43 (2%)

Query: 31 RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQG 73
            +  S D + L +   +  +  W            D  H   
Sbjct: 16 TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD-VHATM 57

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 1e-09
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSC 170
            +  V  ++++     +VSG  D T+K+WD  +L C + L  HT  V C  +  
Sbjct: 14  TSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 5e-09
 Identities = 30/173 (17%), Positives = 57/173 (32%), Gaps = 22/173 (12%)

Query: 25  HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPAC 84
            +G          D + + +   D T+ VW +     +   N        ++   R+   
Sbjct: 134 LVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVS 193

Query: 85  PLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKL 144
                 +           R+      +                  +  +VSG+ D  +K+
Sbjct: 194 GSSDNTI-----------RLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 242

Query: 145 WDVPS---------LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
           WD+ +           C++TL  H+  V    F  D+  + S S+D T+ IWD
Sbjct: 243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 3e-08
 Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 2/123 (1%)

Query: 24  VHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPA 83
              G            RL+ +G  D T+ +W  +  + +            I    +   
Sbjct: 173 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIV 232

Query: 84  CPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVK 143
                 ++    +   +  R         T+  H+  V  ++F+     +VS S D T+ 
Sbjct: 233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTIL 290

Query: 144 LWD 146
           +WD
Sbjct: 291 IWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 6e-08
 Identities = 42/243 (17%), Positives = 72/243 (29%), Gaps = 59/243 (24%)

Query: 35  FSPDTRLLATGGDDETVTVWRSDDLSLI-------------------------------- 62
              D + + +G  D T+ +W  + L                                   
Sbjct: 21  LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 80

Query: 63  --METNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSA 120
                          E    +                 +              +  H +A
Sbjct: 81  DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 140

Query: 121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN 180
           V  V F+ K   +VS S D+T+K+W+  +   ++TL  H R + C  +   D L+ SGS+
Sbjct: 141 VNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS 196

Query: 181 DKTVTIWD---------------------MLATLLASGSNDKTVTIWDMRGNLSVDVPLN 219
           D T+ +WD                          + SG+ D  + +WD+   L    P  
Sbjct: 197 DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG 256

Query: 220 YCC 222
             C
Sbjct: 257 TLC 259

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 9e-06
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 149 SLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
           SL  I      ++ V C     DD  + SG  D T+ IWD 
Sbjct: 4   SLQRIHCRSETSKGVYC--LQYDDQKIVSGLRDNTIKIWDK 42

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 3e-09
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS-LTCIKTLESHTRYVTCCTFSCDDSLL 175
             +   +     +  L+ +GS+D  + ++ V   +  IK L +H   V    +    S L
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE-TPSTL 272

Query: 176 ASGSNDKTVTIWDML 190
            S   D  +  W+++
Sbjct: 273 VSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 2e-06
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
           H   +T++  N     L+SGS D  +  W   S       + H+  +     S      +
Sbjct: 12  HNKGITALTVNP----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNSKAQEYSS 62

Query: 177 SGSNDKTVTIWDM 189
              +D        
Sbjct: 63  ISWDDTLKVNGIT 75

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (83), Expect = 0.001
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 112 ETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV 147
           + +  H   V ++ +    S LVS   D  +K W+V
Sbjct: 252 KALNAHKDGVNNLLW-ETPSTLVSSGADACIKRWNV 286

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 51.3 bits (121), Expect = 2e-08
 Identities = 15/165 (9%), Positives = 41/165 (24%), Gaps = 4/165 (2%)

Query: 24  VHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPA 83
              G ++  +        +A    +     + + D+          H    +    R   
Sbjct: 159 YVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD 218

Query: 84  CPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVK 143
               +    +  +   +   +      ++     T    +   + K    + G     + 
Sbjct: 219 DK--QDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLA 275

Query: 144 LWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
            +D+     IK          C  F      L  G     + +++
Sbjct: 276 KYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFN 319

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.0 bits (102), Expect = 6e-06
 Identities = 16/130 (12%), Positives = 31/130 (23%), Gaps = 16/130 (12%)

Query: 32  CVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQG----RIEGWGRVPACPLC 87
             RF  D +  AT                   +             R           L 
Sbjct: 213 IARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN 272

Query: 88  RTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV 147
           R   +    +++I                       V F+ K   L  G     + +++ 
Sbjct: 273 RLAKYDLKQRKLIKAA------------NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP 320

Query: 148 PSLTCIKTLE 157
            +L  +K ++
Sbjct: 321 DTLEKVKNIK 330

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 7/66 (10%), Positives = 19/66 (28%), Gaps = 2/66 (3%)

Query: 126 FNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE-SHTRYVTCCTFSCDDS-LLASGSNDKT 183
                  ++  +    + + DV S T  K+              + D+       ++   
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 184 VTIWDM 189
           +   D+
Sbjct: 64  IYGIDL 69

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 11  SLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLI 62
           + ++  +  L  + ++     CV F      L  GG    + V+  D L  +
Sbjct: 275 AKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.4 bits (116), Expect = 8e-08
 Identities = 23/202 (11%), Positives = 45/202 (22%), Gaps = 14/202 (6%)

Query: 1   MHEFPMGDGPSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS 60
            H        +L++   L  R +      +  + ++ D   L   G D  V    +  L 
Sbjct: 108 THFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLV 167

Query: 61  LIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGR---H 117
                               V         + + F                  +      
Sbjct: 168 EDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE 227

Query: 118 TSAVTSVRFNHKSSLLVSGSV----------DKTVKLWDVPSLTCIKTLESHTRYVTCCT 167
           T  +             S +V             ++ +D+     IK +           
Sbjct: 228 TGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVN 286

Query: 168 FSCDDSLLASGSNDKTVTIWDM 189
            S D S +  G     +  +D 
Sbjct: 287 VSTDGSTVWLGGALGDLAAYDA 308

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (94), Expect = 6e-05
 Identities = 4/61 (6%), Positives = 19/61 (31%), Gaps = 3/61 (4%)

Query: 132 LLVSGSVDKTVKLWDVPSLTCIKTLE--SHTRYVTCCTFSCD-DSLLASGSNDKTVTIWD 188
            +++ +    + + D   +   K +              +       A+ +  +++   D
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 189 M 189
           +
Sbjct: 63  L 63

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 10/144 (6%), Positives = 29/144 (20%), Gaps = 9/144 (6%)

Query: 14  NGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQG 73
           +   +  +                D            +     +   + M        + 
Sbjct: 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE-----VRI 238

Query: 74  RIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLL 133
               +      P       +  V +          +          +  SV  +   S +
Sbjct: 239 MDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP----LPHSYYSVNVSTDGSTV 294

Query: 134 VSGSVDKTVKLWDVPSLTCIKTLE 157
             G     +  +D  +L     ++
Sbjct: 295 WLGGALGDLAAYDAETLEKKGQVD 318

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 1/78 (1%)

Query: 4   FPMGDGPSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIM 63
           F   +    F+  +      V +  +   V  S D   +  GG    +  + ++ L    
Sbjct: 256 FGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315

Query: 64  ETNDRGHTQGRIEGWGRV 81
           + +  G+    +    R+
Sbjct: 316 QVDLPGNASMSL-ASVRL 332

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 21/198 (10%), Positives = 40/198 (20%), Gaps = 29/198 (14%)

Query: 23  SVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVP 82
            +   +         D  L       E        ++    +     H     +    V 
Sbjct: 152 HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW 211

Query: 83  ACPLCRTRVFSTFVKQIIPTR-----------VGVYGQDSETVGRHTSAVTSVRFNHKSS 131
                +                           G      + V  H +         +  
Sbjct: 212 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD 271

Query: 132 LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA 191
                +  + V + D  +   +   E     +     S D+  L                
Sbjct: 272 EWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPL---------------- 314

Query: 192 TLLASGSNDKTVTIWDMR 209
            L A  + DKT+ I D  
Sbjct: 315 -LYALSTGDKTLYIHDAE 331

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 17/153 (11%), Positives = 35/153 (22%), Gaps = 16/153 (10%)

Query: 33  VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRI-EGWGRVPACPLCRTRV 91
             +S     L        +                   T+    +GW       +   R 
Sbjct: 200 PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA 259

Query: 92  FSTFVKQIIPTRVGVYGQDSETVG-------------RHTSAVTSVRFNH--KSSLLVSG 136
                  +       +   S  V                   + S+  +   K  L    
Sbjct: 260 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALS 319

Query: 137 SVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS 169
           + DKT+ + D  S   ++++          T +
Sbjct: 320 TGDKTLYIHDAESGEELRSVNQLGHGPQVITTA 352

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.4 bits (95), Expect = 3e-05
 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 134 VSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS-LLASGSNDKTVTIWDM 189
           ++ S    + + DV S     T+   +        S D + +  + ++   V+I D 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDT 61

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 1/42 (2%)

Query: 117 HTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTLE 157
                  +        + V+ S   TV + D  + T   T+ 
Sbjct: 242 VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 6/44 (13%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 20  LRGSVHIGSNMRCVRFSPD-TRLLATGGDDETVTVWRSDDLSLI 62
           +   + +G +   +  +PD  ++        TV+V  +   ++ 
Sbjct: 236 ITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT 279

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 127 NHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI 186
           + ++   V+      + L D  +      L++    V     S     L     D  V +
Sbjct: 29  DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNM 87

Query: 187 WDM 189
            D+
Sbjct: 88  IDL 90

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (86), Expect = 8e-04
 Identities = 22/192 (11%), Positives = 49/192 (25%), Gaps = 18/192 (9%)

Query: 11  SLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGH 70
           +L +G+   ++  +  G  +   R S   R L   G D  V +              +  
Sbjct: 45  ALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK-- 102

Query: 71  TQGRIEGWGRVPACPLCRTRVFST-------------FVKQIIPTRVGVYGQDSETVGRH 117
                                 +               ++            D +     
Sbjct: 103 IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH-P 161

Query: 118 TSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT-RYVTCCTFSCDDSLL 175
              V ++  +H +   +V+      + L D   L  +KT E    R++            
Sbjct: 162 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF 221

Query: 176 ASGSNDKTVTIW 187
            + +N +   + 
Sbjct: 222 ITAANARNKLVV 233

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (85), Expect = 7e-04
 Identities = 7/64 (10%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 129 KSSLLVSGSVDKTVKLWDVPSLTCIKTLE--SHTRYVTCCTFSCDDSLL-ASGSNDKTVT 185
           K ++ ++    + + +W++     +   +       V     S D   L      +  V 
Sbjct: 3   KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVL 62

Query: 186 IWDM 189
            + +
Sbjct: 63  AYRI 66

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 11/89 (12%), Positives = 21/89 (23%), Gaps = 13/89 (14%)

Query: 127 NHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS------CDDS--LLASG 178
           +   +    G     V+++D  +   I  +E                  C  S  LL   
Sbjct: 83  STSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFL 142

Query: 179 SNDKTVTIWDMLATLLASGSNDKTVTIWD 207
                          +   S+D+      
Sbjct: 143 FGSSAAAGLS-----VPGASDDQLTKSAS 166

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 21/180 (11%), Positives = 47/180 (26%), Gaps = 2/180 (1%)

Query: 11  SLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGH 70
           +L +G    +   +  G  +   R S   R L   G D  + +              +  
Sbjct: 45  ALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 104

Query: 71  TQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKS 130
            + R             R  +   +         G   +  + V      V +  ++ + 
Sbjct: 105 IEARSVES-SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP 163

Query: 131 SL-LVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
            +  +  S +    + +V     +  +          T       LA G  D +   +  
Sbjct: 164 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMT 223

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.93
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.92
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.92
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.91
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.91
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.91
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.9
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.9
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.9
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.89
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.88
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.88
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.86
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.85
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.85
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.82
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.82
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.81
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.79
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.79
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.78
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.76
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.73
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.71
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.65
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.64
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.49
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.45
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.44
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.42
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.4
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.35
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.33
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.32
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.3
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.25
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.11
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.03
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.02
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.88
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.87
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.75
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.65
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.63
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.4
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.23
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.2
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.14
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.99
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.84
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.8
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.78
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.7
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.57
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.54
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.43
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.22
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.18
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.6
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	95.99
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.98
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	95.19
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	94.89
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	94.82
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	93.55
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	92.93
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	92.3
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	91.7
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	89.84
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	88.18
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	85.59
d1skye2	82	F1 ATP synthase beta subunit, domain 1 {Bacillus s	84.26
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	83.19
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	82.72
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	81.89

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=2.1e-26  Score=184.01  Aligned_cols=184  Identities=22%  Similarity=0.313  Sum_probs=134.7

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee--eeeEeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV--KQIIPTR  103 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  103 (222)
                      |.+.|.+++|+|+|++||+|+.||+|++|++.+...........+... +..   +.+.+.....+.....  ..+..++
T Consensus        57 H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~---v~~s~d~~~l~~~~~~~~~~~~v~~  132 (311)
T d1nr0a1          57 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGP-VKD---ISWDSESKRIAAVGEGRERFGHVFL  132 (311)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSC-EEE---EEECTTSCEEEEEECCSSCSEEEEE
T ss_pred             CCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCc-ccc---ccccccccccccccccccccccccc
Confidence            378899999999999999999999999999987654432211222211 111   1122222211111110  1122222


Q ss_pred             eeeeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCC
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDK  182 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~  182 (222)
                      .. .......+.+|...|.+++|+|+++ .+++|+.|+.|++||+++++....+.+|...|.++.|+|++++|++++.|+
T Consensus       133 ~~-~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~  211 (311)
T d1nr0a1         133 FD-TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG  211 (311)
T ss_dssp             TT-TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cc-cccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccc
Confidence            11 1223345677999999999999987 588999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCC------------------------------CCeEEEeeCCCcEEEEeCC-CCccc
Q psy16881        183 TVTIWDML------------------------------ATLLASGSNDKTVTIWDMR-GNLSV  214 (222)
Q Consensus       183 ~i~lwd~~------------------------------~~~l~s~~~d~~i~iwd~~-~~~~~  214 (222)
                      .+++||+.                              ..+|++|+.|++|+|||++ +++..
T Consensus       212 ~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~  274 (311)
T d1nr0a1         212 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK  274 (311)
T ss_dssp             CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            99999963                              3679999999999999997 43433

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2.4e-24  Score=170.93  Aligned_cols=189  Identities=22%  Similarity=0.370  Sum_probs=133.1

Q ss_pred             EEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee
Q psy16881         18 LILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK   97 (222)
Q Consensus        18 ~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (222)
                      -+|++|   .+.|.+++|+|++++||+|+.||+|+|||+.++..+..+..  +... +.....   .+.....+.+....
T Consensus        49 ~tL~GH---~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~--~~~~-v~~v~~---~~~~~~l~~~~~d~  119 (340)
T d1tbga_          49 RTLRGH---LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL--RSSW-VMTCAY---APSGNYVACGGLDN  119 (340)
T ss_dssp             EEECCC---SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEEC--SCSC-EEEEEE---CTTSSEEEEEETTC
T ss_pred             EEECCC---CCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEec--cccc-EEeeEe---eccceeeeeecccc
Confidence            356677   88999999999999999999999999999998877665432  1111 100000   00000000000000


Q ss_pred             ee----------------------------Eee---ee---------eeecc----CCccccccCCCEEEEEEcCCCCEE
Q psy16881         98 QI----------------------------IPT---RV---------GVYGQ----DSETVGRHTSAVTSVRFNHKSSLL  133 (222)
Q Consensus        98 ~~----------------------------~~~---~~---------~~~~~----~~~~~~~h~~~i~~l~~~~~~~~l  133 (222)
                      .+                            ...   ..         .....    .......+...+....+.+.+.++
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (340)
T d1tbga_         120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF  199 (340)
T ss_dssp             CEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             eeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccccee
Confidence            00                            000   00         00000    001122356778888899999999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC-----------------------
Q psy16881        134 VSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML-----------------------  190 (222)
Q Consensus       134 ~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~-----------------------  190 (222)
                      ++|+.|+.|++||+++++++..+.+|...|++++|+|++++|++++.|+.|++||+.                       
T Consensus       200 ~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  279 (340)
T d1tbga_         200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS  279 (340)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             EEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEEC
Confidence            999999999999999999999999999999999999999999999999999999984                       


Q ss_pred             --CCeEEEeeCCCcEEEEeCC-CCcccc
Q psy16881        191 --ATLLASGSNDKTVTIWDMR-GNLSVD  215 (222)
Q Consensus       191 --~~~l~s~~~d~~i~iwd~~-~~~~~~  215 (222)
                        ..+|++|+.|+.|++||+. +++...
T Consensus       280 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~  307 (340)
T d1tbga_         280 KSGRLLLAGYDDFNCNVWDALKADRAGV  307 (340)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CCCCEEEEEECCCEEEEEECCCCcEEEE
Confidence              3579999999999999987 444433

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=1.1e-24  Score=171.32  Aligned_cols=94  Identities=29%  Similarity=0.527  Sum_probs=83.9

Q ss_pred             ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE---EEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC--
Q psy16881        116 RHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCI---KTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML--  190 (222)
Q Consensus       116 ~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~---~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~--  190 (222)
                      .|...|++++|+|+++++++++.|+.|++||+.++...   ..+.+|...|++++|+|++++|++|+.|+.|++||+.  
T Consensus       177 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         177 VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCC
Confidence            57889999999999999999999999999999876544   3456789999999999999999999999999999974  


Q ss_pred             -----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        191 -----------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       191 -----------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                                             ..+|++++.|+.|++||+.
T Consensus       257 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         257 SDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             TSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             CcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence                                   3579999999999999973

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.4e-23  Score=163.94  Aligned_cols=182  Identities=29%  Similarity=0.417  Sum_probs=135.3

Q ss_pred             EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881         19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ   98 (222)
Q Consensus        19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (222)
                      +|++|   .+.|.+|+|+|++++|+||+.||+|+|||+.+++.+.++.  +|... +..   +...+.............
T Consensus        12 ~L~GH---~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--~h~~~-V~~---~~~~~~~~~~~~~~~~~~   82 (317)
T d1vyhc1          12 ALSGH---RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK--GHTDS-VQD---ISFDHSGKLLASCSADMT   82 (317)
T ss_dssp             EEECC---SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC--CCSSC-EEE---EEECTTSSEEEEEETTSC
T ss_pred             EEcCC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEe--CCCCc-EEE---Eeeecccccccccccccc
Confidence            57777   8899999999999999999999999999999888776653  22221 111   111111111111111111


Q ss_pred             eEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEe
Q psy16881         99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG  178 (222)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~  178 (222)
                      ...+.. ........+..|...+.++.++++++.+++++.|+.+++||+++++.+..+.+|...+.+++|++++++|+++
T Consensus        83 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  161 (317)
T d1vyhc1          83 IKLWDF-QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC  161 (317)
T ss_dssp             CCEEET-TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccc-cccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEE
Confidence            111110 0111112344678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCC-------------------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        179 SNDKTVTIWDML-------------------------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       179 s~D~~i~lwd~~-------------------------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +.|+.|++|++.                                           ..++++++.|+.|++||++.
T Consensus       162 ~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  236 (317)
T d1vyhc1         162 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  236 (317)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             eCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC
Confidence            999999999973                                           24688999999999999984

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=4.5e-23  Score=164.52  Aligned_cols=177  Identities=23%  Similarity=0.253  Sum_probs=128.4

Q ss_pred             eccceEEEEEcCCCCeEEEecC--CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCccccee-eeeeeeeEee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGD--DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF-STFVKQIIPT  102 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  102 (222)
                      |.+.|.+++|+|++++|++++.  +..+++|++++.+...+.  .+|... +..   +.+.+.....+. ......+..+
T Consensus       101 ~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l--~~h~~~-v~~---v~~~~~~~~~l~sgs~d~~i~i~  174 (311)
T d1nr0a1         101 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL--TGQARA-MNS---VDFKPSRPFRIISGSDDNTVAIF  174 (311)
T ss_dssp             SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC--CCCSSC-EEE---EEECSSSSCEEEEEETTSCEEEE
T ss_pred             ccCccccccccccccccccccccccccccccccccccccccc--cccccc-ccc---ccccccceeeecccccccccccc
Confidence            3788999999999999998876  456899999877655443  222221 111   112222222121 1222234444


Q ss_pred             eeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec-------cCCccEEEEEEcCCCCEE
Q psy16881        103 RVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE-------SHTRYVTCCTFSCDDSLL  175 (222)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~-------~~~~~V~~~~~s~~~~~l  175 (222)
                      +.. .......+..|...|+++.++|+++++++++.|+.|++||.+++..+..+.       +|...|++++|+|++++|
T Consensus       175 d~~-~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l  253 (311)
T d1nr0a1         175 EGP-PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI  253 (311)
T ss_dssp             ETT-TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEE
T ss_pred             ccc-ccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEE
Confidence            321 111223445689999999999999999999999999999999887776653       578899999999999999


Q ss_pred             EEeeCCCeEEEEeCC------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        176 ASGSNDKTVTIWDML------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       176 ~s~s~D~~i~lwd~~------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      ++|+.|++|++||+.                        ...+++++.||.|++||+.
T Consensus       254 ~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         254 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            999999999999974                        3568999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=6.5e-23  Score=166.27  Aligned_cols=153  Identities=29%  Similarity=0.507  Sum_probs=124.2

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.|+|++|+|||++||+|+ |++|+||++.+++.+...........  .                             
T Consensus        61 H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~--~-----------------------------  108 (388)
T d1erja_          61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK--D-----------------------------  108 (388)
T ss_dssp             CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------------------------
T ss_pred             CCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccc--c-----------------------------
Confidence            588999999999999999987 89999999998877665421100000  0                             


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                      ...........|...|.+++|+|++++|++|+.||.|++||...++.+....+|...|.++.+++++..+++++.++.++
T Consensus       109 ~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~  188 (388)
T d1erja_         109 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR  188 (388)
T ss_dssp             ----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeee
Confidence            00000011235788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        186 IWDML-----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       186 lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +||+.                       ..++++++.|+.|++||++.
T Consensus       189 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~  236 (388)
T d1erja_         189 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET  236 (388)
T ss_dssp             EEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred             eeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeeccc
Confidence            99974                       35799999999999999973

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=2e-23  Score=169.85  Aligned_cols=180  Identities=16%  Similarity=0.153  Sum_probs=131.1

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      .++|+|++|+|||++||+|+.||.|+||+..+.+........+|... +..   +.+.+.....+.......+..|+...
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~-V~~---l~fsp~~~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ-VTG---VDWAPDSNRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSC-EEE---EEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCC-EEE---EEECCCCCEEEEEECCCeEEEEeecc
Confidence            57799999999999999999999999999976653322222344322 221   22233333333333334555565321


Q ss_pred             ec-cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce----EEEeccCCccEEEEEEcCCCCEEEEeeCC
Q psy16881        107 YG-QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC----IKTLESHTRYVTCCTFSCDDSLLASGSND  181 (222)
Q Consensus       107 ~~-~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~----~~~~~~~~~~V~~~~~s~~~~~l~s~s~D  181 (222)
                      .. .....+.+|...|.+++|+|+++.+++++.|+.|++|++.....    ......|...|.+++|+|++++|++|+.|
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D  162 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  162 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccC
Confidence            11 11123456888999999999999999999999999998765432    33456788899999999999999999999


Q ss_pred             CeEEEEeCC-----------------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        182 KTVTIWDML-----------------------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       182 ~~i~lwd~~-----------------------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +++++||+.                                         ...+++++.|+.|++||+..
T Consensus       163 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeec
Confidence            999999962                                         35689999999999999873

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-22  Score=162.52  Aligned_cols=179  Identities=15%  Similarity=0.236  Sum_probs=126.4

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.|++++|+|+|++|++|+.||+|++||+.............+... +..   ....+.....+.......+..++..
T Consensus        96 h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~---~~~~~~~~~l~s~~~d~~i~~~~~~  171 (337)
T d1gxra_          96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA-CYA---LAISPDSKVCFSCCSDGNIAVWDLH  171 (337)
T ss_dssp             TTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSC-EEE---EEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccc-ccc---ccccccccccccccccccccccccc
Confidence            467899999999999999999999999999875443222111122111 111   1111111111111111122222211


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                       ..........|...|.+++|+++++.+++++.|+.|++||+++++.+..+ .|...|.+++|+|++++|++++.|+.++
T Consensus       172 -~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~  249 (337)
T d1gxra_         172 -NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVE  249 (337)
T ss_dssp             -TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             -cccccccccccccccccccccccccccccccccccccccccccceeeccc-ccccceEEEEEcccccccceeccccccc
Confidence             01111234468899999999999999999999999999999999887766 4678899999999999999999999999


Q ss_pred             EEeCC----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        186 IWDML----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       186 lwd~~----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      +||+.                      ..++++++.|+.|++||+..
T Consensus       250 i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~  296 (337)
T d1gxra_         250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             EEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            99984                      35799999999999999973

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.7e-22  Score=157.91  Aligned_cols=182  Identities=20%  Similarity=0.273  Sum_probs=135.9

Q ss_pred             eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceE---EeeccCCCcceeeccceecCccCCcccceeeeeeeeeEe
Q psy16881         25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLI---METNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIP  101 (222)
Q Consensus        25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (222)
                      .|.+.|.+++|+|+|++|++|+ ||.|+|||+.+....   ......+|.. .+..   +.+.+.....+.+.....+..
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~-~I~~---v~~s~dg~~l~s~~~dg~i~i  123 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDN-YIRS---CKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTS-BEEE---EEECTTSSEEEEEESSSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCC-cEEE---EEEcCCCCEEEEeeccccccc
Confidence            4588999999999999999987 899999998764322   1111122221 1211   222233333333334445555


Q ss_pred             eeeeeec-cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeC
Q psy16881        102 TRVGVYG-QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN  180 (222)
Q Consensus       102 ~~~~~~~-~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~  180 (222)
                      |+..... .....+..|...+..+.|++++.++++++.|+.|++||++++++.....+|...|.+++|++++..+++++.
T Consensus       124 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~  203 (337)
T d1gxra_         124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL  203 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5532211 112345568889999999999999999999999999999999998889999999999999999999999999


Q ss_pred             CCeEEEEeCC----------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881        181 DKTVTIWDML----------------------ATLLASGSNDKTVTIWDMRGN  211 (222)
Q Consensus       181 D~~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~~~  211 (222)
                      |+.+++||+.                      ..++++++.|+.|++||++..
T Consensus       204 d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~  256 (337)
T d1gxra_         204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP  256 (337)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred             cccccccccccceeecccccccceEEEEEcccccccceecccccccccccccc
Confidence            9999999984                      357899999999999999843

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.4e-22  Score=165.97  Aligned_cols=121  Identities=21%  Similarity=0.325  Sum_probs=101.3

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      +...+.+++|+|++ +||+|+.||+|++||+.+++.+.....                                      
T Consensus       183 ~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~--------------------------------------  223 (393)
T d1sq9a_         183 PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES--------------------------------------  223 (393)
T ss_dssp             SCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC--------------------------------------
T ss_pred             CCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccc--------------------------------------
Confidence            35568899999998 889999999999999987655433210                                      


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCc---EEEEeCCCCceEEEec-------------cCCccEEEEEEc
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKT---VKLWDVPSLTCIKTLE-------------SHTRYVTCCTFS  169 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~---I~iwd~~~~~~~~~~~-------------~~~~~V~~~~~s  169 (222)
                           ...+.+|..+|.+++|+|++++|++|+.|++   |++||+++++++..+.             +|...|++++|+
T Consensus       224 -----~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fs  298 (393)
T d1sq9a_         224 -----QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN  298 (393)
T ss_dssp             -----CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred             -----ccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccC
Confidence                 0123468999999999999999999999975   9999999988777663             799999999999


Q ss_pred             CCCCEEEEeeCCCeEEEEeCC
Q psy16881        170 CDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       170 ~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      |++++|+|++.|++|++||+.
T Consensus       299 pd~~~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         299 DSGETLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             SSSSEEEEEETTSEEEEEETT
T ss_pred             CCCCeeEEECCCCEEEEEECC
Confidence            999999999999999999984

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=4.9e-22  Score=161.60  Aligned_cols=180  Identities=18%  Similarity=0.149  Sum_probs=123.2

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.|.+++|+|++++|++|+.|++|++|++.+..........++... +..   +.+.+.....+.......+..+...
T Consensus        50 H~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~-v~~---i~~~p~~~~l~~~s~d~~i~i~~~~  125 (371)
T d1k8kc_          50 HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA-ARC---VRWAPNEKKFAVGSGSRVISICYFE  125 (371)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSC-EEE---EEECTTSSEEEEEETTSSEEEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccc-ccc---cccccccccceeecccCcceeeeee
Confidence            478899999999999999999999999999987654443322222211 111   1122222222222222223333221


Q ss_pred             eecc---CCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC------------------CceEEEeccCCccEE
Q psy16881        106 VYGQ---DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS------------------LTCIKTLESHTRYVT  164 (222)
Q Consensus       106 ~~~~---~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~------------------~~~~~~~~~~~~~V~  164 (222)
                      ....   .......|...|.+++|+|++++|++|+.|+.|++||...                  ++.+.+...|...|.
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  205 (371)
T d1k8kc_         126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH  205 (371)
T ss_dssp             TTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEE
T ss_pred             cccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEE
Confidence            1100   1122346889999999999999999999999999999753                  234566778899999


Q ss_pred             EEEEcCCCCEEEEeeCCCeEEEEeCC----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        165 CCTFSCDDSLLASGSNDKTVTIWDML----------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       165 ~~~~s~~~~~l~s~s~D~~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      +++|+|++++|++++.|+.|++||+.                      ...+++++.|+.+++|...
T Consensus       206 ~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~  272 (371)
T d1k8kc_         206 GVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYD  272 (371)
T ss_dssp             EEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEE
T ss_pred             EEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEee
Confidence            99999999999999999999999973                      1234445667877777654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=4.2e-22  Score=159.39  Aligned_cols=185  Identities=17%  Similarity=0.203  Sum_probs=123.1

Q ss_pred             eeeccceEEEEEcC--CCCeEEEecCCCeEEEEeCCCCceEEeecc------CCCcceeeccceecCccCCcccceeeee
Q psy16881         24 VHIGSNMRCVRFSP--DTRLLATGGDDETVTVWRSDDLSLIMETND------RGHTQGRIEGWGRVPACPLCRTRVFSTF   95 (222)
Q Consensus        24 ~~~~~~v~~l~~sp--dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (222)
                      .|++..|.+++|+|  +|++|++|+.||+|+|||+...........      ..+. ..+..   +.+............
T Consensus        60 gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~-~~v~~---v~~s~~~~~l~~~~~  135 (325)
T d1pgua1          60 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA-GPISD---ISWDFEGRRLCVVGE  135 (325)
T ss_dssp             TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS-SCEEE---EEECTTSSEEEEEEC
T ss_pred             CCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccccccccccc-CcEEE---EEECCCCCccceeec
Confidence            34567899999998  568999999999999999865432211100      0000 01111   111111111111111


Q ss_pred             --eeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEe---ccCCccEEEEEEc
Q psy16881         96 --VKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTL---ESHTRYVTCCTFS  169 (222)
Q Consensus        96 --~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~---~~~~~~V~~~~~s  169 (222)
                        ......+.. ..+.....+.+|...|++++|+++++ .+++++.|+.|++||.+.++....+   ..|...|.+++|+
T Consensus       136 ~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~  214 (325)
T d1pgua1         136 GRDNFGVFISW-DSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS  214 (325)
T ss_dssp             CSSCSEEEEET-TTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC
T ss_pred             cccceEEEEee-cccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeec
Confidence              001111110 01112234567999999999999886 5788999999999999887765554   4567789999999


Q ss_pred             CC-CCEEEEeeCCCeEEEEeCC--------------------------CCeEEEeeCCCcEEEEeCC-CCcc
Q psy16881        170 CD-DSLLASGSNDKTVTIWDML--------------------------ATLLASGSNDKTVTIWDMR-GNLS  213 (222)
Q Consensus       170 ~~-~~~l~s~s~D~~i~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~-~~~~  213 (222)
                      |+ +.+|++++.|+.|++||+.                          +.+|++++.|+.|+|||++ +++.
T Consensus       215 pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~  286 (325)
T d1pgua1         215 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV  286 (325)
T ss_dssp             STTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             cccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEE
Confidence            96 6899999999999999973                          2479999999999999998 4443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=9e-22  Score=157.47  Aligned_cols=137  Identities=20%  Similarity=0.315  Sum_probs=113.6

Q ss_pred             eccceEEEEEcCCCCe-EEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         26 IGSNMRCVRFSPDTRL-LATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~-l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      |...|.+++|+|++++ +++++.|+.|++|+..........                                       
T Consensus       158 h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~---------------------------------------  198 (325)
T d1pgua1         158 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD---------------------------------------  198 (325)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE---------------------------------------
T ss_pred             cccccccccccccccceEEEeecccccccccccccccceec---------------------------------------
Confidence            3788999999999875 678999999999997654322211                                       


Q ss_pred             eeeccCCccccccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEc---CCCCEEEEeeC
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHK-SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS---CDDSLLASGSN  180 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s---~~~~~l~s~s~  180 (222)
                             .....|...|.+++|+|+ ++++++++.|+.|++||+++++++..+.+|...+..+.|+   +++++|++++.
T Consensus       199 -------~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~  271 (325)
T d1pgua1         199 -------RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA  271 (325)
T ss_dssp             -------CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEET
T ss_pred             -------ccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeC
Confidence                   011347788999999997 5799999999999999999999999999988887665555   68999999999


Q ss_pred             CCeEEEEeCC--------------------------CCeEEEeeCCCcEEEEeC
Q psy16881        181 DKTVTIWDML--------------------------ATLLASGSNDKTVTIWDM  208 (222)
Q Consensus       181 D~~i~lwd~~--------------------------~~~l~s~~~d~~i~iwd~  208 (222)
                      |+.|++||+.                          ..++++++.|+.|++||+
T Consensus       272 D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         272 DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            9999999984                          247999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=2.2e-21  Score=157.18  Aligned_cols=181  Identities=28%  Similarity=0.464  Sum_probs=123.5

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      +...|++++|+|+|++|++|+.||+|++|+...........  ++... +...   .................+..++..
T Consensus       120 ~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~--~h~~~-v~~~---~~~~~~~~~~~~~~~~~i~~~d~~  193 (388)
T d1erja_         120 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ--GHEQD-IYSL---DYFPSGDKLVSGSGDRTVRIWDLR  193 (388)
T ss_dssp             CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSC-EEEE---EECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCCCEEEEEECCCCCcceecccccccccccccccccccccc--ccccc-cccc---ccccccccccccccceeeeeeecc
Confidence            46679999999999999999999999999998877665542  22211 1111   111111111122222233333211


Q ss_pred             eeccCCccccccCCCEEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCceEEEe-------ccCCccEEEEEEcCCCCEEEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFN-HKSSLLVSGSVDKTVKLWDVPSLTCIKTL-------ESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~-~~~~~l~sg~~dg~I~iwd~~~~~~~~~~-------~~~~~~V~~~~~s~~~~~l~s  177 (222)
                      .. ....... +.....++.+. +++++|++|+.||.|++||.++++.+..+       .+|...|.+++|+|++++|++
T Consensus       194 ~~-~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  271 (388)
T d1erja_         194 TG-QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS  271 (388)
T ss_dssp             TT-EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred             cc-ccccccc-cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEE
Confidence            00 0011112 33344455554 56789999999999999999988766544       467889999999999999999


Q ss_pred             eeCCCeEEEEeCC-----------------------------------CCeEEEeeCCCcEEEEeCC-CCccc
Q psy16881        178 GSNDKTVTIWDML-----------------------------------ATLLASGSNDKTVTIWDMR-GNLSV  214 (222)
Q Consensus       178 ~s~D~~i~lwd~~-----------------------------------~~~l~s~~~d~~i~iwd~~-~~~~~  214 (222)
                      ++.|+.|++||+.                                   ..+|++|+.|+.|++||++ +++..
T Consensus       272 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~  344 (388)
T d1erja_         272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL  344 (388)
T ss_dssp             EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE
Confidence            9999999999973                                   3579999999999999998 44443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=1.6e-21  Score=154.45  Aligned_cols=116  Identities=27%  Similarity=0.429  Sum_probs=102.4

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      |.+.|.+++|+|++++|++|+.||+|++|++..........                                       
T Consensus       225 h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~---------------------------------------  265 (340)
T d1tbga_         225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS---------------------------------------  265 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---------------------------------------
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccc---------------------------------------
Confidence            37889999999999999999999999999987544332210                                       


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                              ...+...|.+++|++++++|++|+.||.|++||+.+++++..+.+|...|++++|+|++++|+||+.||+|+
T Consensus       266 --------~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~  337 (340)
T d1tbga_         266 --------HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK  337 (340)
T ss_dssp             --------CTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             --------cccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEE
Confidence                    013566789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEe
Q psy16881        186 IWD  188 (222)
Q Consensus       186 lwd  188 (222)
                      +||
T Consensus       338 iWd  340 (340)
T d1tbga_         338 IWN  340 (340)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=6.8e-21  Score=148.50  Aligned_cols=175  Identities=23%  Similarity=0.393  Sum_probs=123.8

Q ss_pred             eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      +...+.++.|+|+++.+++++.|+.+++|++.++........  +.... ..   +.........+.......+..++..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~-~~---~~~~~~~~~l~~~~~d~~v~~~~~~  173 (317)
T d1vyhc1         100 HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG--HREWV-RM---VRPNQDGTLIASCSNDQTVRVWVVA  173 (317)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCE-EE---EEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEcc--CCCcc-ee---eecccCCCEEEEEeCCCeEEEEeec
Confidence            467789999999999999999999999999998776655421  11110 00   1111111111111111122222210


Q ss_pred             eeccCCccccccCCCEEEEEEcCC--------------------CCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEE
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHK--------------------SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTC  165 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~--------------------~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~  165 (222)
                       .......+..|...+.+++++++                    +..+++++.|+.|++||+++++++.++.+|...|.+
T Consensus       174 -~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~  252 (317)
T d1vyhc1         174 -TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG  252 (317)
T ss_dssp             -TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             -cceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEE
Confidence             00111123345566666666543                    457999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEe
Q psy16881        166 CTFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWD  207 (222)
Q Consensus       166 ~~~s~~~~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd  207 (222)
                      ++|+|++++|++++.||.|++||+.                       ..+|++|+.|++|+|||
T Consensus       253 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         253 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999999984                       35799999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.2e-20  Score=146.32  Aligned_cols=97  Identities=35%  Similarity=0.693  Sum_probs=81.0

Q ss_pred             cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC----
Q psy16881        115 GRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML----  190 (222)
Q Consensus       115 ~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~----  190 (222)
                      .+|...+....  ++++++++|+.||.|++||+++++++..+.+|...+.+++++  +++|++++.|+.|++||+.    
T Consensus       174 ~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~  249 (342)
T d2ovrb2         174 QGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQC  249 (342)
T ss_dssp             CCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE
T ss_pred             cCccccccccc--CCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccc
Confidence            34555555444  567899999999999999999999999999999999888776  5699999999999999973    


Q ss_pred             --------------------CCeEEEeeCCCcEEEEeCC-CCcccc
Q psy16881        191 --------------------ATLLASGSNDKTVTIWDMR-GNLSVD  215 (222)
Q Consensus       191 --------------------~~~l~s~~~d~~i~iwd~~-~~~~~~  215 (222)
                                          ..++++|+.|++|++||++ +++...
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~  295 (342)
T d2ovrb2         250 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRN  295 (342)
T ss_dssp             EEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             cccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEE
Confidence                                3579999999999999997 555433

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=6.9e-20  Score=149.83  Aligned_cols=96  Identities=21%  Similarity=0.361  Sum_probs=81.5

Q ss_pred             cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe------ccCCccEEEEEEcCCCCEEEEeeCCC---eEEEE
Q psy16881        117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL------ESHTRYVTCCTFSCDDSLLASGSNDK---TVTIW  187 (222)
Q Consensus       117 h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~------~~~~~~V~~~~~s~~~~~l~s~s~D~---~i~lw  187 (222)
                      +...+.+++|+|++ ++++|+.||+|+|||+++++.+..+      .+|...|.+++|+|+|++|++|+.|+   .|++|
T Consensus       183 ~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lw  261 (393)
T d1sq9a_         183 PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY  261 (393)
T ss_dssp             SCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred             CCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeec
Confidence            34557889999986 8999999999999999988876544      46889999999999999999999987   48999


Q ss_pred             eCC------------------------------------CCeEEEeeCCCcEEEEeCC-CCcc
Q psy16881        188 DML------------------------------------ATLLASGSNDKTVTIWDMR-GNLS  213 (222)
Q Consensus       188 d~~------------------------------------~~~l~s~~~d~~i~iwd~~-~~~~  213 (222)
                      |+.                                    ..+|+|++.|++|++||++ +++.
T Consensus       262 d~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~  324 (393)
T d1sq9a_         262 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI  324 (393)
T ss_dssp             ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             ccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEE
Confidence            973                                    2589999999999999997 4443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.9e-19  Score=142.47  Aligned_cols=98  Identities=27%  Similarity=0.504  Sum_probs=83.5

Q ss_pred             ccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC---
Q psy16881        114 VGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML---  190 (222)
Q Consensus       114 ~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~---  190 (222)
                      ..++...+.++.+++.++.+++++.|+.|++||++++.++..+.+|...|.+++++  +++|++++.||.|++||+.   
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~  274 (355)
T d1nexb2         197 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS  274 (355)
T ss_dssp             ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC
T ss_pred             eeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccc
Confidence            34567788899999999999999999999999999999999999999999999987  5689999999999999984   


Q ss_pred             ------------------CCeEEEeeCCCcEEEEeCC-CCcc
Q psy16881        191 ------------------ATLLASGSNDKTVTIWDMR-GNLS  213 (222)
Q Consensus       191 ------------------~~~l~s~~~d~~i~iwd~~-~~~~  213 (222)
                                        ...+++++.|+.|++||++ +++.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         275 RKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLV  316 (355)
T ss_dssp             EEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBC
T ss_pred             eecccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEE
Confidence                              1234445568999999998 4544

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.1e-18  Score=137.96  Aligned_cols=140  Identities=28%  Similarity=0.592  Sum_probs=111.1

Q ss_pred             eEEEeeeeeeccce-EEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee
Q psy16881         17 ELILRGSVHIGSNM-RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF   95 (222)
Q Consensus        17 ~~~~~~~~~~~~~v-~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (222)
                      ..+|++|   ...| .|++|  ++++|+||+.||+|++||+.+++.+.+                               
T Consensus         5 ~~tL~GH---~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~-------------------------------   48 (355)
T d1nexb2           5 RTTLRGH---MTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQ-------------------------------   48 (355)
T ss_dssp             EEEEECC---SSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEE-------------------------------
T ss_pred             cEEECCc---CCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEE-------------------------------
Confidence            4567776   5554 66655  688999999999999999876544322                               


Q ss_pred             eeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCC--ccEEEEEEcCCCC
Q psy16881         96 VKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT--RYVTCCTFSCDDS  173 (222)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~--~~V~~~~~s~~~~  173 (222)
                                        +.+|...|.+++|++ ++++++|+.|+.|++|+....+.......+.  .......+++++.
T Consensus        49 ------------------l~~H~~~V~~l~~s~-~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (355)
T d1nexb2          49 ------------------LSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK  109 (355)
T ss_dssp             ------------------EECCSSCEEEEEEET-TTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEE
T ss_pred             ------------------EECCCCCEEEEEEcC-CCEEEEEecccccccccccccccccccccccccccccccccccccc
Confidence                              235899999999988 4689999999999999999887766554433  3345566788999


Q ss_pred             EEEEeeCCCeEEEEeCC--------------------------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        174 LLASGSNDKTVTIWDML--------------------------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       174 ~l~s~s~D~~i~lwd~~--------------------------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      .+++++.|+.|++||+.                                            ..+++++..|+.|++||++
T Consensus       110 ~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~  189 (355)
T d1nexb2         110 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA  189 (355)
T ss_dssp             EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred             eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecc
Confidence            99999999999999973                                            2468889999999999997


Q ss_pred             CC
Q psy16881        210 GN  211 (222)
Q Consensus       210 ~~  211 (222)
                      ..
T Consensus       190 ~~  191 (355)
T d1nexb2         190 QM  191 (355)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=2.4e-19  Score=140.82  Aligned_cols=140  Identities=16%  Similarity=0.173  Sum_probs=110.1

Q ss_pred             eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      .|.+.|++|+|+|++++||+|+.||+|+|||+.........                                       
T Consensus         9 ~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~---------------------------------------   49 (342)
T d1yfqa_           9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL---------------------------------------   49 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE---------------------------------------
T ss_pred             CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEE---------------------------------------
Confidence            35788999999999999999999999999997543211110                                       


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEeccCCcc-EEEEEEcCCCCEEEEeeCCC
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRY-VTCCTFSCDDSLLASGSNDK  182 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~-V~~~~~s~~~~~l~s~s~D~  182 (222)
                             ....+|..+|.+++|++++ .++++|+.|+.|++|++...........+... .....+.++...+++++.|+
T Consensus        50 -------~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (342)
T d1yfqa_          50 -------LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG  122 (342)
T ss_dssp             -------EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTS
T ss_pred             -------EEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccccccccccccccccccccccccc
Confidence                   0012488999999999865 58999999999999999887766655544433 34555667889999999999


Q ss_pred             eEEEEeCC-----------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        183 TVTIWDML-----------------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       183 ~i~lwd~~-----------------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      ++++||+.                             ...+++++.|+.|++||++.
T Consensus       123 ~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  179 (342)
T d1yfqa_         123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL  179 (342)
T ss_dssp             EEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSC
T ss_pred             ccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEeccc
Confidence            99999962                             34688999999999999873

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=5.9e-19  Score=137.52  Aligned_cols=117  Identities=17%  Similarity=0.333  Sum_probs=95.5

Q ss_pred             eeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881         24 VHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR  103 (222)
Q Consensus        24 ~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (222)
                      ..+.+.|.+++|+|++++|++|+.||.|++||+.+......                                       
T Consensus       159 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~---------------------------------------  199 (287)
T d1pgua2         159 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS---------------------------------------  199 (287)
T ss_dssp             SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC---------------------------------------
T ss_pred             eccCCceeEEEeccCccccccccccccccceeecccccccc---------------------------------------
Confidence            34567899999999999999999999999999875433211                                       


Q ss_pred             eeeeccCCccccccCCCEEEEEEcC----------CCCEEEEEeCCCcEEEEeCCC-CceEEEeccCCccEEEEEEcCCC
Q psy16881        104 VGVYGQDSETVGRHTSAVTSVRFNH----------KSSLLVSGSVDKTVKLWDVPS-LTCIKTLESHTRYVTCCTFSCDD  172 (222)
Q Consensus       104 ~~~~~~~~~~~~~h~~~i~~l~~~~----------~~~~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~V~~~~~s~~~  172 (222)
                               .+..|...|.+++|+|          ++.++++|+.|++|+|||+++ .+.+..+.+|...|.++.|++++
T Consensus       200 ---------~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~  270 (287)
T d1pgua2         200 ---------RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS  270 (287)
T ss_dssp             ---------CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT
T ss_pred             ---------cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC
Confidence                     1124677777777765          456899999999999999976 55677788999999999999876


Q ss_pred             CEEEEeeCCCeEEEEeC
Q psy16881        173 SLLASGSNDKTVTIWDM  189 (222)
Q Consensus       173 ~~l~s~s~D~~i~lwd~  189 (222)
                       .|++++.|++|++|++
T Consensus       271 -~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         271 -TLVSSGADACIKRWNV  286 (287)
T ss_dssp             -EEEEEETTSCEEEEEE
T ss_pred             -EEEEEECCCeEEEEEE
Confidence             5889999999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=9.7e-18  Score=130.49  Aligned_cols=93  Identities=17%  Similarity=0.323  Sum_probs=82.0

Q ss_pred             ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE-EeccCCccEEEEEEcCC----------CCEEEEeeCCCeE
Q psy16881        116 RHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIK-TLESHTRYVTCCTFSCD----------DSLLASGSNDKTV  184 (222)
Q Consensus       116 ~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~-~~~~~~~~V~~~~~s~~----------~~~l~s~s~D~~i  184 (222)
                      .|...+++++|+|++++|++|+.||.|++||+.+++... .+.+|...|.+++|+|.          +.+|++|+.|++|
T Consensus       160 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i  239 (287)
T d1pgua2         160 PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNI  239 (287)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCE
T ss_pred             ccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeE
Confidence            477889999999999999999999999999999887654 46789999999999874          4689999999999


Q ss_pred             EEEeCC-----------------------CCeEEEeeCCCcEEEEeC
Q psy16881        185 TIWDML-----------------------ATLLASGSNDKTVTIWDM  208 (222)
Q Consensus       185 ~lwd~~-----------------------~~~l~s~~~d~~i~iwd~  208 (222)
                      ++||+.                       ...+++++.|+.|++||+
T Consensus       240 ~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         240 FIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             EEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            999974                       236899999999999986

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.79  E-value=4.4e-18  Score=133.10  Aligned_cols=157  Identities=22%  Similarity=0.359  Sum_probs=104.3

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      ...+.+++|+|++++|++|+.||.|++||+.+........ ..+. ..+..   +.+.+.....+.......+..++...
T Consensus       136 ~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~-~~~~-~~i~~---~~~~~~~~~l~~~~~d~~i~~~~~~~  210 (299)
T d1nr0a2         136 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHP-AEITS---VAFSNNGAFLVATDQSRKVIPYSVAN  210 (299)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECS-SCEEE---EEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccc-cccc-ccccc---cccccccccccccccccccccccccc
Confidence            4568899999999999999999999999998765433221 1111 11111   11222222222222233344443211


Q ss_pred             --eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce--EEEeccC-CccEEEEEEcCCCCEEEEeeCC
Q psy16881        107 --YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC--IKTLESH-TRYVTCCTFSCDDSLLASGSND  181 (222)
Q Consensus       107 --~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~--~~~~~~~-~~~V~~~~~s~~~~~l~s~s~D  181 (222)
                        .......+..|...|++++|+|++++|++|+.||.|++||+++...  +.....| ...|.++.+ +++++|++++.|
T Consensus       211 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D  289 (299)
T d1nr0a2         211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQD  289 (299)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETT
T ss_pred             cccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCC
Confidence              1122234567899999999999999999999999999999987543  3333344 445666654 567899999999


Q ss_pred             CeEEEEeC
Q psy16881        182 KTVTIWDM  189 (222)
Q Consensus       182 ~~i~lwd~  189 (222)
                      ++|++||+
T Consensus       290 ~~i~iWdl  297 (299)
T d1nr0a2         290 SNIKFWNV  297 (299)
T ss_dssp             SCEEEEEC
T ss_pred             CEEEEEec
Confidence            99999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.8e-17  Score=127.46  Aligned_cols=92  Identities=34%  Similarity=0.712  Sum_probs=78.9

Q ss_pred             ccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC---
Q psy16881        114 VGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML---  190 (222)
Q Consensus       114 ~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~---  190 (222)
                      +..|...|..+.+.  ...+++++.|+.|++||.++++.+..+.++...|..+.++  +..+++++.|++|++||+.   
T Consensus       134 ~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~  209 (293)
T d1p22a2         134 LVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA  209 (293)
T ss_dssp             ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC
T ss_pred             ccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccce
Confidence            34577788777765  4678899999999999999999999999999888887775  6689999999999999984   


Q ss_pred             ------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        191 ------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       191 ------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                                        ..++++++.|+.|++||+.
T Consensus       210 ~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~  246 (293)
T d1p22a2         210 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV  246 (293)
T ss_dssp             EEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHH
T ss_pred             eeeeecccceeeeeccccceEEEEEcCCCEEEEEECC
Confidence                              3579999999999999975

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1e-16  Score=123.21  Aligned_cols=177  Identities=23%  Similarity=0.397  Sum_probs=107.8

Q ss_pred             eeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeE
Q psy16881         21 RGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQII  100 (222)
Q Consensus        21 ~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (222)
                      ..+..+...|.|++  +||++||+|+.||+|+|||+.+++.+.++  .+|.... ....   +  .....+.+.....+.
T Consensus         9 ~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l--~~H~~~V-~~v~---~--~~~~l~s~s~D~~i~   78 (293)
T d1p22a2           9 HCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRIL--TGHTGSV-LCLQ---Y--DERVIITGSSDSTVR   78 (293)
T ss_dssp             ECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEE--CCCSSCE-EEEE---C--CSSEEEEEETTSCEE
T ss_pred             eccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEE--ecCCCCE-eeee---c--ccceeeccccccccc
Confidence            33444567788865  58999999999999999999888777665  2332221 1111   1  111111222222233


Q ss_pred             eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE---EEeccCCccEEEEEEcCCCCEEEE
Q psy16881        101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCI---KTLESHTRYVTCCTFSCDDSLLAS  177 (222)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~---~~~~~~~~~V~~~~~s~~~~~l~s  177 (222)
                      .++... .......  .........+.+....++++..++.+++||..+....   ..+..|...|.++.+.  ...+++
T Consensus        79 ~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~  153 (293)
T d1p22a2          79 VWDVNT-GEMLNTL--IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVS  153 (293)
T ss_dssp             EEESSS-CCEEEEE--CCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEE
T ss_pred             cccccc-ccccccc--cccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--cccccc
Confidence            332110 0000111  1222233445566677777777777888877777542   3345666777666654  456788


Q ss_pred             eeCCCeEEEEeCC---------------------CCeEEEeeCCCcEEEEeCCCCc
Q psy16881        178 GSNDKTVTIWDML---------------------ATLLASGSNDKTVTIWDMRGNL  212 (222)
Q Consensus       178 ~s~D~~i~lwd~~---------------------~~~l~s~~~d~~i~iwd~~~~~  212 (222)
                      ++.|+.+++||+.                     ...+++++.|++|++||++...
T Consensus       154 ~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~  209 (293)
T d1p22a2         154 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA  209 (293)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCC
T ss_pred             ccCCCceeeecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccce
Confidence            8899999999985                     2478999999999999998543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.3e-16  Score=125.15  Aligned_cols=165  Identities=26%  Similarity=0.406  Sum_probs=109.1

Q ss_pred             EEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCCcc
Q psy16881         34 RFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSET  113 (222)
Q Consensus        34 ~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (222)
                      .+.+....+++++.|++|++|+....................        .......+.......+..++.. .......
T Consensus       142 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~s~~~dg~i~~~d~~-~~~~~~~  212 (342)
T d2ovrb2         142 CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--------QFDGIHVVSGSLDTSIRVWDVE-TGNCIHT  212 (342)
T ss_dssp             EEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE--------EECSSEEEEEETTSCEEEEETT-TCCEEEE
T ss_pred             eeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccc--------cCCCCEEEEEeCCCeEEEeecc-cceeeeE
Confidence            455566788888889999999988888777763221111000        0011111122222233333321 1111223


Q ss_pred             ccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc---CCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        114 VGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES---HTRYVTCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       114 ~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~---~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      +..|...+.+++++  ++++++++.|+.|++||+...+....+..   |...+.++.++  ++++++|+.||+|++||+.
T Consensus       213 ~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         213 LTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             ECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred             ecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECC
Confidence            45678888888776  47999999999999999998877776654   45567776665  5799999999999999984


Q ss_pred             ----------------------------CCeEEEeeCCCc----EEEEeCCCC
Q psy16881        191 ----------------------------ATLLASGSNDKT----VTIWDMRGN  211 (222)
Q Consensus       191 ----------------------------~~~l~s~~~d~~----i~iwd~~~~  211 (222)
                                                  ..++|+|+.||+    |++||+..+
T Consensus       289 tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  341 (342)
T ss_dssp             TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             CCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence                                        236889888885    999999754

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.71  E-value=1.7e-16  Score=126.22  Aligned_cols=133  Identities=16%  Similarity=0.075  Sum_probs=111.5

Q ss_pred             ccceEEEEEcCCCCeEEEecCCC--eEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDE--TVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV  104 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (222)
                      ...|++++|+|||++|++++.+.  .|++|+.+++....                                         
T Consensus        42 ~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~-----------------------------------------   80 (360)
T d1k32a3          42 PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-----------------------------------------   80 (360)
T ss_dssp             CSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-----------------------------------------
T ss_pred             CCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE-----------------------------------------
Confidence            67899999999999988766553  78999987543211                                         


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEee-----
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS-----  179 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s-----  179 (222)
                               +..|...|.+++|+|+++++++++.++.+++|+..+++....+..|...+.+++|+|+|++|+.++     
T Consensus        81 ---------~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~  151 (360)
T d1k32a3          81 ---------FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG  151 (360)
T ss_dssp             ---------CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSS
T ss_pred             ---------eeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeecccccc
Confidence                     124778899999999999999999999999999999998888888888999999999999998643     


Q ss_pred             -----CCCeEEEEeCC----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        180 -----NDKTVTIWDML----------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       180 -----~D~~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                           .++.+++||+.                      +..|++++.++.+++||..
T Consensus       152 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         152 ETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             TTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             ceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEccccc
Confidence                 44578999984                      3578999999999999875

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=2.8e-16  Score=122.95  Aligned_cols=96  Identities=17%  Similarity=0.229  Sum_probs=82.2

Q ss_pred             ccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce---EEEeccCCccEEEEEEcCC-CCEEEEeeCCCeEEEEeC
Q psy16881        114 VGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC---IKTLESHTRYVTCCTFSCD-DSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       114 ~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~---~~~~~~~~~~V~~~~~s~~-~~~l~s~s~D~~i~lwd~  189 (222)
                      ..+|...|++++|+|++++|++|+.||+|+|||+.+...   +....+|...|.+++|+++ +.+|++|+.|+.|++|++
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~   86 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeec
Confidence            457999999999999999999999999999999865433   2333469999999999986 458999999999999998


Q ss_pred             C------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881        190 L------------------------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       190 ~------------------------~~~l~s~~~d~~i~iwd~~  209 (222)
                      .                        ...+++++.|+.+++||++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~  130 (342)
T d1yfqa_          87 IGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR  130 (342)
T ss_dssp             SSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeecc
Confidence            4                        3578899999999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.64  E-value=2.9e-15  Score=118.97  Aligned_cols=105  Identities=12%  Similarity=0.127  Sum_probs=86.8

Q ss_pred             EEEcC-CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCC
Q psy16881         33 VRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDS  111 (222)
Q Consensus        33 l~~sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (222)
                      -.||| ||++||+++ +|+|++|+++++....                                                
T Consensus         8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~------------------------------------------------   38 (360)
T d1k32a3           8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK------------------------------------------------   38 (360)
T ss_dssp             EEEEECGGGCEEEEE-TTEEEEECTTSSBEEE------------------------------------------------
T ss_pred             ccccCCCCCEEEEEE-CCeEEEEECCCCcEEE------------------------------------------------
Confidence            46999 999999886 5899999986432211                                                


Q ss_pred             ccccccCCCEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881        112 ETVGRHTSAVTSVRFNHKSSLLVSGSVDK--TVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       112 ~~~~~h~~~i~~l~~~~~~~~l~sg~~dg--~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                        + .|...|.+++|+|+|+.+++++.+.  .|++||.++++. ..+..|...|.+++|+|++++|++++.++.+.+|++
T Consensus        39 --~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~  114 (360)
T d1k32a3          39 --V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL  114 (360)
T ss_dssp             --C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             --c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccceeccccccccccc
Confidence              0 3678899999999999888776553  799999987654 567789999999999999999999999999999998


Q ss_pred             C
Q psy16881        190 L  190 (222)
Q Consensus       190 ~  190 (222)
                      .
T Consensus       115 ~  115 (360)
T d1k32a3         115 E  115 (360)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.49  E-value=4.3e-13  Score=110.77  Aligned_cols=141  Identities=13%  Similarity=0.045  Sum_probs=99.7

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV  106 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (222)
                      +..+..++|||||++|++++.||+|++||+.+........              +                         
T Consensus        61 g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~--------------i-------------------------  101 (432)
T d1qksa2          61 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE--------------I-------------------------  101 (432)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE--------------E-------------------------
T ss_pred             CCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEE--------------E-------------------------
Confidence            3468999999999999999999999999987543221110              0                         


Q ss_pred             eccCCccccccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEeccC-----------CccEEEEEEcCCCCE
Q psy16881        107 YGQDSETVGRHTSAVTSVRFNHKSSLL-VSGSVDKTVKLWDVPSLTCIKTLESH-----------TRYVTCCTFSCDDSL  174 (222)
Q Consensus       107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l-~sg~~dg~I~iwd~~~~~~~~~~~~~-----------~~~V~~~~~s~~~~~  174 (222)
                           ....+|...+.+..|+|+|+++ ++++.++.|+|||..+++.+..+..+           ......+.+++++..
T Consensus       102 -----~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~  176 (432)
T d1qksa2         102 -----KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE  176 (432)
T ss_dssp             -----ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE
T ss_pred             -----ecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCE
Confidence                 0001233445556788999975 77888999999999999888766543           233567889999887


Q ss_pred             EE-EeeCCCeEEEEeCC------------------------CCeEEEee-CCCcEEEEeCCCC
Q psy16881        175 LA-SGSNDKTVTIWDML------------------------ATLLASGS-NDKTVTIWDMRGN  211 (222)
Q Consensus       175 l~-s~s~D~~i~lwd~~------------------------~~~l~s~~-~d~~i~iwd~~~~  211 (222)
                      ++ +.+.++.|.+||..                        ..++++++ .++.+.++|.+..
T Consensus       177 ~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         177 FIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             EEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             EEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence            65 56677899999863                        23444444 4567888888743

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.45  E-value=1.2e-11  Score=95.39  Aligned_cols=136  Identities=15%  Similarity=0.194  Sum_probs=74.1

Q ss_pred             CcccceEEEeeeeeeccceEEEEEcCCCCeE-EEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccc
Q psy16881         12 LFNGTELILRGSVHIGSNMRCVRFSPDTRLL-ATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTR   90 (222)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l-~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (222)
                      +++-...++......+..+..++|+|||++| ++++.+++|++||+.+.+.+....... ....      +.........
T Consensus        16 v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~------~~~~~~~~~~   88 (301)
T d1l0qa2          16 VIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQG------VAVSPDGKQV   88 (301)
T ss_dssp             EEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEE------EEECTTSSEE
T ss_pred             EEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccc------cccccccccc
Confidence            3333333333333335668889999999987 567789999999999888776553211 1100      1111111111


Q ss_pred             eeeeeee-eeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEe
Q psy16881         91 VFSTFVK-QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLL-VSGSVDKTVKLWDVPSLTCIKTL  156 (222)
Q Consensus        91 ~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~sg~~dg~I~iwd~~~~~~~~~~  156 (222)
                      ....... .+..++. ........+ .+.....++.++++++.+ +++..++.+.+|+..+.+.+..+
T Consensus        89 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (301)
T d1l0qa2          89 YVTNMASSTLSVIDT-TSNTVAGTV-KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV  154 (301)
T ss_dssp             EEEETTTTEEEEEET-TTTEEEEEE-ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccccccceeeeccc-ccceeeeec-cccccceEEEeecCCCeeeeeeccccceeeeeccccceeeec
Confidence            1111111 1111110 000011112 244567889999999865 55566888999999877665544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.44  E-value=1.4e-11  Score=96.11  Aligned_cols=179  Identities=11%  Similarity=0.074  Sum_probs=103.8

Q ss_pred             eccceEEEEEcCCCCeE-EEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee--
Q psy16881         26 IGSNMRCVRFSPDTRLL-ATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT--  102 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l-~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  102 (222)
                      .+..+..++|+|||++| ++++.++.|.+||+.+++............. ......+.+.+................+  
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~-~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~  110 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER-VKSLFGAALSPDGKTLAIYESPVRLELTHF  110 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE-EECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccc-ccceeeEEEcCCCcEEEEeecCCcceeeec
Confidence            35567889999999987 5677899999999999887765432111100 0000011122222211111111100000  


Q ss_pred             -----eeeeecc-C---CccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe-----------------
Q psy16881        103 -----RVGVYGQ-D---SETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL-----------------  156 (222)
Q Consensus       103 -----~~~~~~~-~---~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~-----------------  156 (222)
                           ....+.. .   ...+ .+...+..+.|+++|+++++++.  .+.+||..+++....+                 
T Consensus       111 ~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (337)
T d1pbyb_         111 EVQPTRVALYDAETLSRRKAF-EAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLA  187 (337)
T ss_dssp             EECCCEEEEEETTTTEEEEEE-ECCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCC
T ss_pred             cccccceeeccccCCeEEEec-cccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcce
Confidence                 0000100 0   0111 13445677899999998888864  4667877665443332                 


Q ss_pred             -------------------------------------------------ccCCccEEEEEEcCCCCEEEEeeCCCeEEEE
Q psy16881        157 -------------------------------------------------ESHTRYVTCCTFSCDDSLLASGSNDKTVTIW  187 (222)
Q Consensus       157 -------------------------------------------------~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lw  187 (222)
                                                                       ..+...+..+.+++++.+++++  ++.|++|
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~  265 (337)
T d1pbyb_         188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESF  265 (337)
T ss_dssp             CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEE
T ss_pred             eeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEE
Confidence                                                             1122334556677788877755  5789999


Q ss_pred             eCC----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        188 DML----------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       188 d~~----------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      |+.                      +..|++++.|+.|++||+++
T Consensus       266 d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         266 DLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             ETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             ECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            984                      45788999999999999983

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.42  E-value=1.4e-12  Score=107.68  Aligned_cols=100  Identities=14%  Similarity=0.043  Sum_probs=77.9

Q ss_pred             eEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCCccccccCCC
Q psy16881         41 LLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSA  120 (222)
Q Consensus        41 ~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  120 (222)
                      ++++.+.||+|.|||..+++.+..+.                                                 .+ ..
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~-------------------------------------------------~g-~~   63 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLD-------------------------------------------------TG-YA   63 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEE-------------------------------------------------CS-SC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEe-------------------------------------------------CC-CC
Confidence            45899999999999998776654431                                                 12 24


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce--EEEec---cCCccEEEEEEcCCCCEE-EEeeCCCeEEEEeCC
Q psy16881        121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC--IKTLE---SHTRYVTCCTFSCDDSLL-ASGSNDKTVTIWDML  190 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~--~~~~~---~~~~~V~~~~~s~~~~~l-~s~s~D~~i~lwd~~  190 (222)
                      +..++|+|+|+++++++.|+.|++||+.+++.  +.++.   .|...+.+..|+|||++| ++++.++++++||..
T Consensus        64 ~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~  139 (432)
T d1qksa2          64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE  139 (432)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred             eeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCc
Confidence            77899999999999999999999999987653  33333   455556667788999976 678899999999973

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.40  E-value=2.4e-12  Score=105.61  Aligned_cols=107  Identities=12%  Similarity=0.025  Sum_probs=81.4

Q ss_pred             EEcCCCC--eEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCC
Q psy16881         34 RFSPDTR--LLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDS  111 (222)
Q Consensus        34 ~~spdg~--~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (222)
                      .+++|.+  ++++.+.||+|++||+.+++.+.++.                                             
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~---------------------------------------------   59 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID---------------------------------------------   59 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEE---------------------------------------------
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEe---------------------------------------------
Confidence            3555544  56788899999999998776654331                                             


Q ss_pred             ccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE--EEe---ccCCccEEEEEEcCCCCEEEE-eeCCCeEE
Q psy16881        112 ETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCI--KTL---ESHTRYVTCCTFSCDDSLLAS-GSNDKTVT  185 (222)
Q Consensus       112 ~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~--~~~---~~~~~~V~~~~~s~~~~~l~s-~s~D~~i~  185 (222)
                          .| ..+..++|+|+|+++++++.|+.|++||+.+++..  .++   .+|...+.++.|+|+|+++++ +..++.++
T Consensus        60 ----~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~  134 (426)
T d1hzua2          60 ----TG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFA  134 (426)
T ss_dssp             ----CC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEE
T ss_pred             ----CC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEE
Confidence                12 34778999999999999999999999999887643  233   345566677888899998755 55889999


Q ss_pred             EEeCC
Q psy16881        186 IWDML  190 (222)
Q Consensus       186 lwd~~  190 (222)
                      +||..
T Consensus       135 i~d~~  139 (426)
T d1hzua2         135 IMDGE  139 (426)
T ss_dssp             EEETT
T ss_pred             EEcCC
Confidence            99974

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.35  E-value=2.9e-12  Score=105.09  Aligned_cols=117  Identities=12%  Similarity=0.019  Sum_probs=79.3

Q ss_pred             cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881         28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY  107 (222)
Q Consensus        28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (222)
                      ..+..++|||||++|++++.||+|++||+.+.+......        +                                
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~--------i--------------------------------  101 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE--------I--------------------------------  101 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE--------E--------------------------------
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEE--------E--------------------------------
Confidence            568999999999999999999999999998665332110        0                                


Q ss_pred             ccCCccccccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceEEEeccCCcc-----------EEEEEEcCCCCEE
Q psy16881        108 GQDSETVGRHTSAVTSVRFNHKSSLLV-SGSVDKTVKLWDVPSLTCIKTLESHTRY-----------VTCCTFSCDDSLL  175 (222)
Q Consensus       108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~-sg~~dg~I~iwd~~~~~~~~~~~~~~~~-----------V~~~~~s~~~~~l  175 (222)
                          ....+|...+.++.|+|+|++++ ++..++.+++||..++++...+..|...           ...+.+++++..+
T Consensus       102 ----~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~  177 (426)
T d1hzua2         102 ----KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  177 (426)
T ss_dssp             ----ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             ----eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEE
Confidence                00012444556677889999764 4558899999999998887766554332           3455666666665


Q ss_pred             EEeeC-CCeEEEEe
Q psy16881        176 ASGSN-DKTVTIWD  188 (222)
Q Consensus       176 ~s~s~-D~~i~lwd  188 (222)
                      +.... .+.+.+++
T Consensus       178 ~~~~~~~~~i~~~~  191 (426)
T d1hzua2         178 IVNVKETGKVLLVN  191 (426)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEecCCCCeEEEEE
Confidence            54433 34444443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.33  E-value=5.9e-11  Score=92.53  Aligned_cols=160  Identities=11%  Similarity=0.051  Sum_probs=97.3

Q ss_pred             ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCccc-c---------------
Q psy16881         27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT-R---------------   90 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------   90 (222)
                      ...+..++|+|||+++++++.+  +.+||..+............................... .               
T Consensus       134 ~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (337)
T d1pbyb_         134 PRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDP  211 (337)
T ss_dssp             CSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCT
T ss_pred             cCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccce
Confidence            4557789999999999998754  678999887766554321111000000000000000000 0               


Q ss_pred             -eeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEc
Q psy16881         91 -VFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS  169 (222)
Q Consensus        91 -~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s  169 (222)
                       ........+..++..........+..+...+..+.+++++.+++.+  ++.|++||+++++.+..+. +...+.+++|+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s  288 (337)
T d1pbyb_         212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVS  288 (337)
T ss_dssp             TSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEEC
T ss_pred             eeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEEC
Confidence             0000000111111000000111233456677888899999888766  4899999999999888775 45568899999


Q ss_pred             CCCCEEEEeeCCCeEEEEeCCC
Q psy16881        170 CDDSLLASGSNDKTVTIWDMLA  191 (222)
Q Consensus       170 ~~~~~l~s~s~D~~i~lwd~~~  191 (222)
                      |+|++|++++.|++|++||..+
T Consensus       289 ~dG~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         289 TDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             TTSCEEEEESBSSEEEEEETTT
T ss_pred             CCCCEEEEEeCCCcEEEEECCC
Confidence            9999999999999999999864

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.32  E-value=3.1e-10  Score=87.13  Aligned_cols=157  Identities=15%  Similarity=0.095  Sum_probs=96.7

Q ss_pred             ccceEEEEEcCCCCeE-EEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee-eeEeeee
Q psy16881         27 GSNMRCVRFSPDTRLL-ATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK-QIIPTRV  104 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l-~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  104 (222)
                      ...+.+++|+|+|+.+ +++..++.+.+|+..+............. ..      +...........+.... ....+..
T Consensus       115 ~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~  187 (301)
T d1l0qa2         115 GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP-KG------IAVTPDGTKVYVANFDSMSISVIDT  187 (301)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSE-EE------EEECTTSSEEEEEETTTTEEEEEET
T ss_pred             cccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCc-eE------EEeeccccceeeecccccccccccc
Confidence            4567889999999976 46667899999999888766654322111 00      01111111111111110 0111000


Q ss_pred             eeeccCCccccccCCCEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEE-EEeeC
Q psy16881        105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS---VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLL-ASGSN  180 (222)
Q Consensus       105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~---~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l-~s~s~  180 (222)
                        ..............+..+.++++++.++.+.   .++.|++||+.+++.+..+..+ ..+..++|+|+|++| ++++.
T Consensus       188 --~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~  264 (301)
T d1l0qa2         188 --VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSF  264 (301)
T ss_dssp             --TTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETT
T ss_pred             --cceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECC
Confidence              0000001112344567788999998776554   3468999999999988887654 457899999999977 57778


Q ss_pred             CCeEEEEeCCCCe
Q psy16881        181 DKTVTIWDMLATL  193 (222)
Q Consensus       181 D~~i~lwd~~~~~  193 (222)
                      |++|++||+.+..
T Consensus       265 ~~~i~v~D~~t~~  277 (301)
T d1l0qa2         265 CNTVSVIDTATNT  277 (301)
T ss_dssp             TTEEEEEETTTTE
T ss_pred             CCeEEEEECCCCe
Confidence            9999999987543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.30  E-value=2.8e-11  Score=94.73  Aligned_cols=110  Identities=5%  Similarity=-0.062  Sum_probs=84.1

Q ss_pred             EEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCCc
Q psy16881         33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSE  112 (222)
Q Consensus        33 l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (222)
                      ++|++++++|++++.|++|.+||+++.+.+.+...                                             
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~---------------------------------------------   36 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM---------------------------------------------   36 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC---------------------------------------------
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc---------------------------------------------
Confidence            46899999999999999999999987766543310                                             


Q ss_pred             cccccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEeccCCc------cEEEEEEcCCCCEEEEee------
Q psy16881        113 TVGRHTSAVTSVRFNHKSSLL-VSGSVDKTVKLWDVPSLTCIKTLESHTR------YVTCCTFSCDDSLLASGS------  179 (222)
Q Consensus       113 ~~~~h~~~i~~l~~~~~~~~l-~sg~~dg~I~iwd~~~~~~~~~~~~~~~------~V~~~~~s~~~~~l~s~s------  179 (222)
                         .|...+..+.|+|+|+++ +++..++.|++||+.+++.+..+.....      .+..++|+|+|+++++++      
T Consensus        37 ---~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~  113 (346)
T d1jmxb_          37 ---PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL  113 (346)
T ss_dssp             ---SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEEC
T ss_pred             ---CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcce
Confidence               123334678999999976 5566789999999999988876654322      245789999999998775      


Q ss_pred             ------CCCeEEEEeCC
Q psy16881        180 ------NDKTVTIWDML  190 (222)
Q Consensus       180 ------~D~~i~lwd~~  190 (222)
                            .+..+.+||..
T Consensus       114 ~~~~~~~~~~i~~~~~~  130 (346)
T d1jmxb_         114 NDHYVVKPPRLEVFSTA  130 (346)
T ss_dssp             SSCEEECCCEEEEEEGG
T ss_pred             eeeeccCcceEEEEecc
Confidence                  46778888863

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.25  E-value=5.4e-10  Score=87.21  Aligned_cols=75  Identities=13%  Similarity=0.100  Sum_probs=60.3

Q ss_pred             ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCCCC
Q psy16881        116 RHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLAT  192 (222)
Q Consensus       116 ~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~~  192 (222)
                      .|...+..+.+++++..++.+. ++.|++||..+++.+..+.. ...+.+++|+|||++|++++.|+.|++||+.+.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~-~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~  323 (346)
T d1jmxb_         249 DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  323 (346)
T ss_dssp             ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             cccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccC
Confidence            3455666777777777666655 46899999999998877753 346889999999999999999999999998653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=1.6e-09  Score=84.34  Aligned_cols=126  Identities=14%  Similarity=0.146  Sum_probs=85.5

Q ss_pred             EEEeeeeeeccceEEEEEcCCCCeEE-EecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee
Q psy16881         18 LILRGSVHIGSNMRCVRFSPDTRLLA-TGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV   96 (222)
Q Consensus        18 ~~~~~~~~~~~~v~~l~~spdg~~l~-tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (222)
                      +++..-..+.+.++.|+|||||++|+ ++..|++|++|++.......+..                              
T Consensus        27 l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~------------------------------   76 (333)
T d1ri6a_          27 LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA------------------------------   76 (333)
T ss_dssp             EEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE------------------------------
T ss_pred             eEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEe------------------------------
Confidence            34333333467799999999999885 55568999999986432211100                              


Q ss_pred             eeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCceE--EEeccCCccEEEEEEcCCCC
Q psy16881         97 KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV-DKTVKLWDVPSLTCI--KTLESHTRYVTCCTFSCDDS  173 (222)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~-dg~I~iwd~~~~~~~--~~~~~~~~~V~~~~~s~~~~  173 (222)
                              ..        ..+...+..++|+|+|+++++++. ++.|++|+.......  .....+...+.++.++++++
T Consensus        77 --------~~--------~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~  140 (333)
T d1ri6a_          77 --------AE--------SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNR  140 (333)
T ss_dssp             --------EE--------EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSS
T ss_pred             --------ee--------cccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecce
Confidence                    00        012334557999999999888875 678999987655432  33345666788899999999


Q ss_pred             EEEEee-CCCeEEEEeC
Q psy16881        174 LLASGS-NDKTVTIWDM  189 (222)
Q Consensus       174 ~l~s~s-~D~~i~lwd~  189 (222)
                      ++++++ .+..+.+|+.
T Consensus       141 ~~~~~~~~~~~i~~~~~  157 (333)
T d1ri6a_         141 TLWVPALKQDRICLFTV  157 (333)
T ss_dssp             EEEEEEGGGTEEEEEEE
T ss_pred             eeeccccccceeeEEEe
Confidence            888766 4457888886

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.03  E-value=5.6e-09  Score=82.81  Aligned_cols=133  Identities=12%  Similarity=-0.067  Sum_probs=94.7

Q ss_pred             ccceEEEEEcCCCCeEEEe-----cCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEe
Q psy16881         27 GSNMRCVRFSPDTRLLATG-----GDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIP  101 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l~tg-----s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (222)
                      .+.+..++++|||+.++..     +.+++|.+||.++++.+.+..                                   
T Consensus        20 ~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~-----------------------------------   64 (373)
T d2madh_          20 DGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN-----------------------------------   64 (373)
T ss_pred             CCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEe-----------------------------------
Confidence            5678889999999988754     235678889887665543321                                   


Q ss_pred             eeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceEEEeccCCccE-------E
Q psy16881        102 TRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS----------VDKTVKLWDVPSLTCIKTLESHTRYV-------T  164 (222)
Q Consensus       102 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~----------~dg~I~iwd~~~~~~~~~~~~~~~~V-------~  164 (222)
                                    .+..  ..+.|+|+|+++++++          .++.|.+||+.+++.+..+..+....       .
T Consensus        65 --------------~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~  128 (373)
T d2madh_          65 --------------GGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW  128 (373)
T ss_pred             --------------CCCC--ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCC
Confidence                          0111  2478999999888775          45789999999999888776655443       3


Q ss_pred             EEEEcCCCCEEEEee--CCCeEEEEeCC--------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881        165 CCTFSCDDSLLASGS--NDKTVTIWDML--------------------ATLLASGSNDKTVTIWDMRG  210 (222)
Q Consensus       165 ~~~~s~~~~~l~s~s--~D~~i~lwd~~--------------------~~~l~s~~~d~~i~iwd~~~  210 (222)
                      .+.|+++++.++...  .+..+.+|+..                    ...+++.+.|+++.+||...
T Consensus       129 ~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~  196 (373)
T d2madh_         129 MNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAG  196 (373)
T ss_pred             cEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCC
Confidence            467888888766554  45678888763                    23467788899999999863

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=2.6e-09  Score=83.07  Aligned_cols=94  Identities=11%  Similarity=0.089  Sum_probs=65.9

Q ss_pred             cCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceEEE---eccCCccEEEEEEcCCCCEEEEeeC-CCeEEEEeCC-
Q psy16881        117 HTSAVTSVRFNHKSSLLVSGS-VDKTVKLWDVPSLTCIKT---LESHTRYVTCCTFSCDDSLLASGSN-DKTVTIWDML-  190 (222)
Q Consensus       117 h~~~i~~l~~~~~~~~l~sg~-~dg~I~iwd~~~~~~~~~---~~~~~~~V~~~~~s~~~~~l~s~s~-D~~i~lwd~~-  190 (222)
                      |...+..++|+|+|++|++++ .|+.|++|++.......+   ...+...+..++|+|+|++|++++. ++.+.+|+.. 
T Consensus        35 ~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~  114 (333)
T d1ri6a_          35 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLED  114 (333)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecccc
Confidence            566778899999999885554 589999999865432221   1223344668999999999998874 6788888752 


Q ss_pred             ------------------------CCeEEEee-CCCcEEEEeCCC
Q psy16881        191 ------------------------ATLLASGS-NDKTVTIWDMRG  210 (222)
Q Consensus       191 ------------------------~~~l~s~~-~d~~i~iwd~~~  210 (222)
                                              ...++.++ .+..|.+|+...
T Consensus       115 ~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_         115 GLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             TEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ccceecccccCCCccceEEEeeecceeeeccccccceeeEEEecc
Confidence                                    23444444 456788888763

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.88  E-value=1.4e-08  Score=79.70  Aligned_cols=105  Identities=13%  Similarity=0.071  Sum_probs=73.2

Q ss_pred             EEcCCCCeEEEe-----cCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeec
Q psy16881         34 RFSPDTRLLATG-----GDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYG  108 (222)
Q Consensus        34 ~~spdg~~l~tg-----s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (222)
                      +.+|||+++++.     ..+++|.+||.++++.+.+..                                          
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~------------------------------------------   45 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID------------------------------------------   45 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE------------------------------------------
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE------------------------------------------
Confidence            568999988764     346789999988765543320                                          


Q ss_pred             cCCccccccCCCEEEEEEcCCCCEEEEE----------eCCCcEEEEeCCCCceEEEeccCCcc-------EEEEEEcCC
Q psy16881        109 QDSETVGRHTSAVTSVRFNHKSSLLVSG----------SVDKTVKLWDVPSLTCIKTLESHTRY-------VTCCTFSCD  171 (222)
Q Consensus       109 ~~~~~~~~h~~~i~~l~~~~~~~~l~sg----------~~dg~I~iwd~~~~~~~~~~~~~~~~-------V~~~~~s~~  171 (222)
                             .+.  ...++|+|+|++++.+          ..|+.|++||+.+++.+..+..+...       ...+.|+++
T Consensus        46 -------~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  116 (355)
T d2bbkh_          46 -------GGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD  116 (355)
T ss_dssp             -------ECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT
T ss_pred             -------CCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecC
Confidence                   011  1257899999977654          34789999999999887776543221       245789999


Q ss_pred             CCEEEEee--CCCeEEEEeC
Q psy16881        172 DSLLASGS--NDKTVTIWDM  189 (222)
Q Consensus       172 ~~~l~s~s--~D~~i~lwd~  189 (222)
                      ++.++.++  .+..+.+||.
T Consensus       117 g~~~~v~~~~~~~~~~~~~~  136 (355)
T d2bbkh_         117 GKTLLFYQFSPAPAVGVVDL  136 (355)
T ss_dssp             SSEEEEEECSSSCEEEEEET
T ss_pred             CCeeEEecCCCCceeeeeec
Confidence            99887664  4567888876

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.87  E-value=1.5e-07  Score=74.36  Aligned_cols=61  Identities=15%  Similarity=0.023  Sum_probs=49.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCE--EEEeeCCCeEEEEeCCC
Q psy16881        130 SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSL--LASGSNDKTVTIWDMLA  191 (222)
Q Consensus       130 ~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~--l~s~s~D~~i~lwd~~~  191 (222)
                      +..+++...++.+.+||+.+++.+..+. +...+..++|+|+|+.  +++++.|++|++||+.+
T Consensus       288 ~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~t  350 (373)
T d2madh_         288 QSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             CceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence            3445566777899999999999888775 4456889999999984  46788999999999864

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.75  E-value=5.7e-09  Score=85.94  Aligned_cols=113  Identities=15%  Similarity=0.160  Sum_probs=77.8

Q ss_pred             eccceEEEEEcCCCCeEEEecC---------CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee
Q psy16881         26 IGSNMRCVRFSPDTRLLATGGD---------DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV   96 (222)
Q Consensus        26 ~~~~v~~l~~spdg~~l~tgs~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (222)
                      +...|.++.|||||++||.++.         ++.+.+||++++...                                  
T Consensus        60 ~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~----------------------------------  105 (470)
T d2bgra1          60 FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI----------------------------------  105 (470)
T ss_dssp             SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC----------------------------------
T ss_pred             ccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc----------------------------------
Confidence            3567899999999999998753         345556665533211                                  


Q ss_pred             eeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccC-----------------
Q psy16881         97 KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESH-----------------  159 (222)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~-----------------  159 (222)
                                      .+..|...+..+.|+|+|+.+|... ++.+.+|+..+++.......+                 
T Consensus       106 ----------------~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~  168 (470)
T d2bgra1         106 ----------------TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE  168 (470)
T ss_dssp             ----------------CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             ----------------ccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeee
Confidence                            1223566788899999999888865 678999999877665433211                 


Q ss_pred             -CccEEEEEEcCCCCEEEEeeCCCe-EEEEeC
Q psy16881        160 -TRYVTCCTFSCDDSLLASGSNDKT-VTIWDM  189 (222)
Q Consensus       160 -~~~V~~~~~s~~~~~l~s~s~D~~-i~lwd~  189 (222)
                       ......+.|||+|+.|++...|.+ +..|.+
T Consensus       169 ~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             TSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             ecCCccccEECCCCCccceeEecCCcCceEEE
Confidence             112345789999999999876643 555543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.65  E-value=8.9e-08  Score=78.59  Aligned_cols=111  Identities=11%  Similarity=0.101  Sum_probs=84.7

Q ss_pred             EEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCC
Q psy16881         32 CVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDS  111 (222)
Q Consensus        32 ~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (222)
                      .+.|.++++++..  .|+.+.+|++.++.....+.                                            .
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~--------------------------------------------~   54 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLE--------------------------------------------N   54 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEEC--------------------------------------------T
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEc--------------------------------------------h
Confidence            3679999998865  57889999998765432210                                            0


Q ss_pred             ccccccCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCC
Q psy16881        112 ETVGRHTSAVTSVRFNHKSSLLVSGSV---------DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDK  182 (222)
Q Consensus       112 ~~~~~h~~~i~~l~~~~~~~~l~sg~~---------dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~  182 (222)
                      ..+..|...|.+++|+|+|++|+.++.         ++.+.|||+.+++ +..+..+...+..+.|||+|+.||... ++
T Consensus        55 ~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~  132 (470)
T d2bgra1          55 STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NN  132 (470)
T ss_dssp             TTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TT
T ss_pred             hhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEee-cc
Confidence            123456677889999999999888753         4678899999876 455777888899999999999999865 66


Q ss_pred             eEEEEeCC
Q psy16881        183 TVTIWDML  190 (222)
Q Consensus       183 ~i~lwd~~  190 (222)
                      .+.+|+..
T Consensus       133 ~l~~~~~~  140 (470)
T d2bgra1         133 DIYVKIEP  140 (470)
T ss_dssp             EEEEESST
T ss_pred             cceEEECC
Confidence            89999874

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.63  E-value=1.5e-07  Score=74.69  Aligned_cols=35  Identities=11%  Similarity=0.037  Sum_probs=27.5

Q ss_pred             EEEEEcCCCCeEEEec----------CCCeEEEEeCCCCceEEee
Q psy16881         31 RCVRFSPDTRLLATGG----------DDETVTVWRSDDLSLIMET   65 (222)
Q Consensus        31 ~~l~~spdg~~l~tgs----------~Dg~i~iwd~~~~~~~~~~   65 (222)
                      ..++|+|||++|++.+          .|++|++||..+.+.....
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i  112 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI  112 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeee
Confidence            3578999999988754          4788999999887766543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.61  E-value=1.1e-07  Score=74.34  Aligned_cols=69  Identities=19%  Similarity=0.175  Sum_probs=53.5

Q ss_pred             EEEEEcCCCCEEEEEeCC----------CcEEEEeCCCCceEEEeccCCccEEEEEEcCCCC--EEEEeeCCCeEEEEeC
Q psy16881        122 TSVRFNHKSSLLVSGSVD----------KTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS--LLASGSNDKTVTIWDM  189 (222)
Q Consensus       122 ~~l~~~~~~~~l~sg~~d----------g~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~--~l~s~s~D~~i~lwd~  189 (222)
                      ..+++++++..++....+          +.|.+||..+++.+..+..+ ..+.+++|+|+|+  ++++++.|++|.+||+
T Consensus       252 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~  330 (355)
T d2bbkh_         252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDA  330 (355)
T ss_dssp             SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred             EEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC-CCEEEEEEcCCCCeEEEEEECCCCEEEEEEC
Confidence            346788888876665443          36999999999988877643 4578999999997  4567778999999998


Q ss_pred             CC
Q psy16881        190 LA  191 (222)
Q Consensus       190 ~~  191 (222)
                      .+
T Consensus       331 ~t  332 (355)
T d2bbkh_         331 ES  332 (355)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.40  E-value=7.8e-07  Score=70.43  Aligned_cols=87  Identities=14%  Similarity=0.022  Sum_probs=65.7

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceEEEeccCCcc-------EEEEEEcCCCCEEEEee-CCCeE
Q psy16881        123 SVRFNHKSSLLVSGS----------VDKTVKLWDVPSLTCIKTLESHTRY-------VTCCTFSCDDSLLASGS-NDKTV  184 (222)
Q Consensus       123 ~l~~~~~~~~l~sg~----------~dg~I~iwd~~~~~~~~~~~~~~~~-------V~~~~~s~~~~~l~s~s-~D~~i  184 (222)
                      .+.|+|+|++++..+          .|+.|++||..+++.+..+..+...       ...++|+|+|++|+++. .++.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            367889998777654          4778999999999988877543321       23588999999998775 57899


Q ss_pred             EEEeCCC--------------------CeEEEeeCCCcEEEEeCC
Q psy16881        185 TIWDMLA--------------------TLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       185 ~lwd~~~--------------------~~l~s~~~d~~i~iwd~~  209 (222)
                      .+||+.+                    ..+++.+.|+++..|++.
T Consensus       149 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~  193 (368)
T d1mdah_         149 AGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLA  193 (368)
T ss_dssp             EEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECC
T ss_pred             EEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEec
Confidence            9999742                    245566779999999875

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.23  E-value=4.9e-05  Score=60.18  Aligned_cols=93  Identities=9%  Similarity=0.114  Sum_probs=59.1

Q ss_pred             CCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCce--EEEec-----------------cCCccEEEEEEcCCCCEEEEe
Q psy16881        119 SAVTSVRFNHKSSLLVSGS-VDKTVKLWDVPSLTC--IKTLE-----------------SHTRYVTCCTFSCDDSLLASG  178 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~sg~-~dg~I~iwd~~~~~~--~~~~~-----------------~~~~~V~~~~~s~~~~~l~s~  178 (222)
                      .....+.|+|++++++... .++.|.+|++...+.  +....                 .+......+.++|+|++|+++
T Consensus       193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            4567799999999775555 578899999865432  22110                 111235678899999999876


Q ss_pred             eC------CCeEEEEeCC------------------------------CCeEEEe-eCCCcEEEEeCCCC
Q psy16881        179 SN------DKTVTIWDML------------------------------ATLLASG-SNDKTVTIWDMRGN  211 (222)
Q Consensus       179 s~------D~~i~lwd~~------------------------------~~~l~s~-~~d~~i~iwd~~~~  211 (222)
                      ..      ...|..|++.                              +.+|+++ ..++.|.+|+++.+
T Consensus       273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             cccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            42      1235544431                              2445444 56789999987643

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.20  E-value=0.00012  Score=56.07  Aligned_cols=110  Identities=15%  Similarity=0.208  Sum_probs=77.3

Q ss_pred             ceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeec
Q psy16881         29 NMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYG  108 (222)
Q Consensus        29 ~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (222)
                      .+..++++|||+++++...+++|..|+.......  .                                           
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~--~-------------------------------------------   63 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI--H-------------------------------------------   63 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE--E-------------------------------------------
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEE--E-------------------------------------------
Confidence            4677899999999999999999888875421100  0                                           


Q ss_pred             cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eEEEe--ccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881        109 QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT-CIKTL--ESHTRYVTCCTFSCDDSLLASGSNDKTVT  185 (222)
Q Consensus       109 ~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~-~~~~~--~~~~~~V~~~~~s~~~~~l~s~s~D~~i~  185 (222)
                            ......+.+++++++|+++++...++.+.+++..... ....+  .........+.++++++++++.+.++.+.
T Consensus        64 ------~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~  137 (302)
T d2p4oa1          64 ------ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIW  137 (302)
T ss_dssp             ------EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEE
T ss_pred             ------EcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccce
Confidence                  0123456789999999988888888888877754321 11111  12345578899999999998888888877


Q ss_pred             EEeC
Q psy16881        186 IWDM  189 (222)
Q Consensus       186 lwd~  189 (222)
                      .+|.
T Consensus       138 ~~~~  141 (302)
T d2p4oa1         138 LIDV  141 (302)
T ss_dssp             EEET
T ss_pred             eeec
Confidence            7775

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.14  E-value=0.00042  Score=52.32  Aligned_cols=156  Identities=10%  Similarity=0.163  Sum_probs=87.1

Q ss_pred             eEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceee-ccceecCccCCcccceeeeee--eeeEeeeeee
Q psy16881         30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRI-EGWGRVPACPLCRTRVFSTFV--KQIIPTRVGV  106 (222)
Q Consensus        30 v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  106 (222)
                      .+.|+++++|+++++-.....|++|+.+ +..+..+...+...... ...+ +...............  ..+...  ..
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~i~~~--~~  100 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNR-VAVVRNSGDIIVTERSPTHQIQIY--NQ  100 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEE-EEEETTTTEEEEEECGGGCEEEEE--CT
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCccccccccc-ccccccccccceeccCCccccccc--cc
Confidence            5789999999988887778999999965 55555443221111100 0000 0000000000000000  011000  00


Q ss_pred             eccCCccc-cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe--ccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881        107 YGQDSETV-GRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL--ESHTRYVTCCTFSCDDSLLASGSNDKT  183 (222)
Q Consensus       107 ~~~~~~~~-~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~--~~~~~~V~~~~~s~~~~~l~s~s~D~~  183 (222)
                      .+.....+ .........+++.++++++++....+.+.+++. +++.+..+  ..+......++++++++++++....+.
T Consensus       101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~  179 (279)
T d1q7fa_         101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC  179 (279)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccc
Confidence            00000111 112345677888999988888777777888875 45666655  334556788899999988888888889


Q ss_pred             EEEEeCC
Q psy16881        184 VTIWDML  190 (222)
Q Consensus       184 i~lwd~~  190 (222)
                      |.+||..
T Consensus       180 V~~~d~~  186 (279)
T d1q7fa_         180 VKVFNYE  186 (279)
T ss_dssp             EEEEETT
T ss_pred             eeeeecC
Confidence            9998863

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.99  E-value=6.9e-05  Score=60.79  Aligned_cols=69  Identities=13%  Similarity=0.079  Sum_probs=48.4

Q ss_pred             CcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEE-EeeCCCeEEEEeCC----------------------------
Q psy16881        140 KTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA-SGSNDKTVTIWDML----------------------------  190 (222)
Q Consensus       140 g~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~-s~s~D~~i~lwd~~----------------------------  190 (222)
                      +.+.|++....+.+..+..... ...+.++|+|++++ ++..++++.+||+.                            
T Consensus       238 ~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh  316 (441)
T d1qnia2         238 KVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLH  316 (441)
T ss_dssp             CCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEE
T ss_pred             CcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccc
Confidence            3555665555555666655444 46789999999875 57788999999973                            


Q ss_pred             ------CCeEEEeeCCCcEEEEeCC
Q psy16881        191 ------ATLLASGSNDKTVTIWDMR  209 (222)
Q Consensus       191 ------~~~l~s~~~d~~i~iwd~~  209 (222)
                            +....|...|..|..|++.
T Consensus       317 ~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         317 TTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             EEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             ceecCCceEEEcccccceEEEeccc
Confidence                  1235555678899999864

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.84  E-value=0.0028  Score=47.54  Aligned_cols=73  Identities=16%  Similarity=0.269  Sum_probs=54.8

Q ss_pred             cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec--cCCccEEEEEEcCCCCEEEEeeC-CCeEEEEeCC
Q psy16881        117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE--SHTRYVTCCTFSCDDSLLASGSN-DKTVTIWDML  190 (222)
Q Consensus       117 h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~--~~~~~V~~~~~s~~~~~l~s~s~-D~~i~lwd~~  190 (222)
                      +......++++++++.+++....+.|++||.. ++.+.++.  +.......++++++|+++++-+. ++.|.+|+..
T Consensus       155 ~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~  230 (279)
T d1q7fa_         155 HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD  230 (279)
T ss_dssp             TCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred             cccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC
Confidence            44566788899999888888888999999964 66666663  34455789999999998877543 4568888753

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.80  E-value=4.2e-06  Score=68.11  Aligned_cols=118  Identities=19%  Similarity=0.240  Sum_probs=74.0

Q ss_pred             ceEEEEEcCCCCeE-EEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881         29 NMRCVRFSPDTRLL-ATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY  107 (222)
Q Consensus        29 ~v~~l~~spdg~~l-~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (222)
                      ....+.++|||+++ +++..+++|.+||+++.....+    +...              ......               
T Consensus       259 sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~----~~~~--------------~~~~~~---------------  305 (441)
T d1qnia2         259 NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFE----DKIE--------------LRDTIV---------------  305 (441)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTT----TSSC--------------GGGGEE---------------
T ss_pred             CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhh----ccCC--------------cceEEE---------------
Confidence            35668999999986 5677899999999875321110    0000              000000               


Q ss_pred             ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC----------CceEEEe-----ccCCccEEEEEEcCCC
Q psy16881        108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS----------LTCIKTL-----ESHTRYVTCCTFSCDD  172 (222)
Q Consensus       108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~----------~~~~~~~-----~~~~~~V~~~~~s~~~  172 (222)
                      .+..     ..-.....+|+++|+...+...|+.|..|++..          ...+..+     .+|...+.+.+++|+|
T Consensus       306 ~~~~-----~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdG  380 (441)
T d1qnia2         306 AEPE-----LGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADG  380 (441)
T ss_dssp             ECCB-----CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCC
T ss_pred             eecc-----cccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCC
Confidence            0000     011123457999998888889999999999731          1233344     3666666778899999


Q ss_pred             CEEEEe---eCCCeE
Q psy16881        173 SLLASG---SNDKTV  184 (222)
Q Consensus       173 ~~l~s~---s~D~~i  184 (222)
                      ++|+++   |.|+.+
T Consensus       381 k~l~s~~k~s~dr~~  395 (441)
T d1qnia2         381 KWLVVLSKFSKDRFL  395 (441)
T ss_dssp             CEEEEEESCCGGGSC
T ss_pred             cEEEecCccccccCc
Confidence            999999   666543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.78  E-value=0.00064  Score=53.50  Aligned_cols=136  Identities=12%  Similarity=0.122  Sum_probs=77.0

Q ss_pred             ccceEEEEEcCCCCeE-EEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881         27 GSNMRCVRFSPDTRLL-ATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG  105 (222)
Q Consensus        27 ~~~v~~l~~spdg~~l-~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (222)
                      +...+.++|+|+|+++ ++...+++|.+|++++.........     ..      .+....                   
T Consensus       192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~-----~~------~~~~~~-------------------  241 (365)
T d1jofa_         192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTH-----HS------FPLIPP-------------------  241 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE-----EE------EESSCT-------------------
T ss_pred             CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEe-----ee------eccccc-------------------
Confidence            5678889999999987 4555699999999865432211100     00      000000                   


Q ss_pred             eeccCCccccccCCCEEEEEEcCCCCEEEEEeC-CC-----cEEEEeCCCCceEE------EeccCCccEEEEEEcC-CC
Q psy16881        106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV-DK-----TVKLWDVPSLTCIK------TLESHTRYVTCCTFSC-DD  172 (222)
Q Consensus       106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~-dg-----~I~iwd~~~~~~~~------~~~~~~~~V~~~~~s~-~~  172 (222)
                      ...........+......+.++|+|++++++.. +.     .|..|++.....+.      .....-...+.++++| +|
T Consensus       242 ~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G  321 (365)
T d1jofa_         242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD  321 (365)
T ss_dssp             TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred             cccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCC
Confidence            000000001123344567889999998877642 22     37777664322221      1111223456789998 78


Q ss_pred             CEEEEe-eCCCeEEEEeCCCC
Q psy16881        173 SLLASG-SNDKTVTIWDMLAT  192 (222)
Q Consensus       173 ~~l~s~-s~D~~i~lwd~~~~  192 (222)
                      ++|+++ ..++.|.+|++...
T Consensus       322 ~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         322 EWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TEEEEECSSSCEEEEEEEETT
T ss_pred             CEEEEEeCCCCeEEEEEEeCC
Confidence            877665 57789999987544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.70  E-value=0.0017  Score=48.23  Aligned_cols=70  Identities=9%  Similarity=-0.019  Sum_probs=52.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      ...++++++++.+++...++.|..+|.............-.....++++++|+++++-...+.|..++..
T Consensus       142 p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~  211 (260)
T d1rwia_         142 PDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  211 (260)
T ss_dssp             CCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTT
T ss_pred             cceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCC
Confidence            4578899999988888888889999977544333222344557889999999988888888888888763

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.57  E-value=0.0025  Score=48.88  Aligned_cols=70  Identities=9%  Similarity=0.118  Sum_probs=53.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEE-EEeeCCCeEEEEeCC
Q psy16881        121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLL-ASGSNDKTVTIWDML  190 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l-~s~s~D~~i~lwd~~  190 (222)
                      ...++++++|++.++....+.|.+||-..++.+..+..+...+++++|.++++.| ++.+..+.|...++.
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            4568899999987777778899999988777666666666678899999988744 555666777776653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.54  E-value=0.0081  Score=44.38  Aligned_cols=72  Identities=7%  Similarity=0.002  Sum_probs=50.4

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       119 ~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      .....++++++++++++-..+..+..++...................++++++++++++...++.|..+|..
T Consensus        98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~  169 (260)
T d1rwia_          98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE  169 (260)
T ss_dssp             CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred             eecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccc
Confidence            456789999999987777666777777765433222111222345688999999988888888889998864

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=0.0067  Score=44.46  Aligned_cols=72  Identities=10%  Similarity=0.062  Sum_probs=44.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCC-CcEEE--EeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCC---CeEEEEeCCC
Q psy16881        118 TSAVTSVRFNHKSSLLVSGSVD-KTVKL--WDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSND---KTVTIWDMLA  191 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~sg~~d-g~I~i--wd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D---~~i~lwd~~~  191 (222)
                      ........|+|+++.++..+.+ +...+  .|...+..  ....+........|||+|+.|+..+..   ..|.++++.+
T Consensus       170 ~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg  247 (269)
T d2hqsa1         170 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG  247 (269)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             cccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            4455667899999876665544 44444  45554433  333344556778999999998865533   3556666653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.22  E-value=0.025  Score=43.07  Aligned_cols=178  Identities=9%  Similarity=0.050  Sum_probs=90.8

Q ss_pred             eEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeee--eeeeeEeeeeeee
Q psy16881         30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFST--FVKQIIPTRVGVY  107 (222)
Q Consensus        30 v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  107 (222)
                      +-.++|.++|++.++-...++|.-|+.+..............+.-      +.............  .............
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~g------la~~~dG~l~va~~~~~~~~~~i~~~~~~  115 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAA------IKIHKDGRLFVCYLGDFKSTGGIFAATEN  115 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEE------EEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeE------EEECCCCCEEEEecCCCccceeEEEEcCC
Confidence            457899999998888778999988888765433322111111100      00111111000000  0000000000000


Q ss_pred             ccCCcc-cc--ccCCCEEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEE-E
Q psy16881        108 GQDSET-VG--RHTSAVTSVRFNHKSSLLVSGSV------DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA-S  177 (222)
Q Consensus       108 ~~~~~~-~~--~h~~~i~~l~~~~~~~~l~sg~~------dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~-s  177 (222)
                      ...... ..  .-....+.+.++++|++.++...      .+.+..++.. ++.+..+...-...+.++|+++++.|+ +
T Consensus       116 ~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~~~pnGia~s~dg~~lyva  194 (319)
T d2dg1a1         116 GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNISVANGIALSTDEKVLWVT  194 (319)
T ss_dssp             SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             CceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc-cceeEEEeeccceeeeeeeccccceEEEe
Confidence            000000 00  11234678899999987666432      1234444433 222332222223356799999998664 5


Q ss_pred             eeCCCeEEEEeCC-------------------------------CCeEEEeeCCCcEEEEeCCCCccc
Q psy16881        178 GSNDKTVTIWDML-------------------------------ATLLASGSNDKTVTIWDMRGNLSV  214 (222)
Q Consensus       178 ~s~D~~i~lwd~~-------------------------------~~~l~s~~~d~~i~iwd~~~~~~~  214 (222)
                      -+..+.|..||+.                               +.+.++...++.|.+||..++...
T Consensus       195 d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~  262 (319)
T d2dg1a1         195 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIG  262 (319)
T ss_dssp             EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEE
T ss_pred             cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEE
Confidence            5667889888752                               234555566789999998877643

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.18  E-value=0.0034  Score=47.59  Aligned_cols=68  Identities=10%  Similarity=0.132  Sum_probs=54.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881        120 AVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       120 ~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      .++.++++++|+++++...++.|..||.. ++. ..+......+.+++|+++|+++++...++.+..++.
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~   96 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSL   96 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCE-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEe
Confidence            57889999999999999999999888854 332 333444567899999999999998888877777764

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.0056  Score=49.61  Aligned_cols=68  Identities=15%  Similarity=0.160  Sum_probs=41.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec-cCCccE-----------------EEEEEcCCCCEEEEeeC-C
Q psy16881        121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE-SHTRYV-----------------TCCTFSCDDSLLASGSN-D  181 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~~~~V-----------------~~~~~s~~~~~l~s~s~-D  181 (222)
                      +....|+|+|+.+|-.. ++.|.+.+...+..++... +....|                 ..+-|||+|+.||.... +
T Consensus       116 l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~  194 (465)
T d1xfda1         116 LQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND  194 (465)
T ss_dssp             CSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC
T ss_pred             cceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecc
Confidence            33456889998777665 5677777776554443222 111111                 46779999999998663 3


Q ss_pred             CeEEEEeC
Q psy16881        182 KTVTIWDM  189 (222)
Q Consensus       182 ~~i~lwd~  189 (222)
                      ..+..+.+
T Consensus       195 s~V~~~~~  202 (465)
T d1xfda1         195 SRVPIMEL  202 (465)
T ss_dssp             TTSCEEEE
T ss_pred             cccceeec
Confidence            44555543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.99  E-value=0.2  Score=37.71  Aligned_cols=71  Identities=11%  Similarity=0.182  Sum_probs=49.5

Q ss_pred             CEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCC-ceEE-------EeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        120 AVTSVRFNHKSSLL-VSGSVDKTVKLWDVPSL-TCIK-------TLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       120 ~i~~l~~~~~~~~l-~sg~~dg~I~iwd~~~~-~~~~-------~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      ..+.++|+++++.| ++-+..+.|..||+... ....       ...........++++.+|++.++....+.|.++|..
T Consensus       178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~  257 (319)
T d2dg1a1         178 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  257 (319)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             eeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC
Confidence            35679999999865 44466788999987532 2111       111112235679999999988888888999999864

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.98  E-value=0.074  Score=38.52  Aligned_cols=61  Identities=10%  Similarity=0.176  Sum_probs=37.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEeC-CC-----cEEEEeCCCCceEEEeccC-------CccEEEEEEcCCCCEEEEee
Q psy16881        118 TSAVTSVRFNHKSSLLVSGSV-DK-----TVKLWDVPSLTCIKTLESH-------TRYVTCCTFSCDDSLLASGS  179 (222)
Q Consensus       118 ~~~i~~l~~~~~~~~l~sg~~-dg-----~I~iwd~~~~~~~~~~~~~-------~~~V~~~~~s~~~~~l~s~s  179 (222)
                      ...+...+|+|+|+.|+-... ++     .|.+++...++... +..+       ........|+|+|+.|+...
T Consensus        40 ~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~-lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          40 LGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR-ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             SSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE-CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             CCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE-eeecCCCccCccccccccccCCCCCEEEEEE
Confidence            344567889999997765432 22     36666776665432 2211       12345788999999888643

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=95.19  E-value=0.41  Score=35.87  Aligned_cols=70  Identities=16%  Similarity=0.255  Sum_probs=46.3

Q ss_pred             EEEEEEcCCCC-----EEEEEeCCCcEEEEeCCCCceEE------Eecc-CCccEEEEEEcCCCCEEEEeeCCCeEEEEe
Q psy16881        121 VTSVRFNHKSS-----LLVSGSVDKTVKLWDVPSLTCIK------TLES-HTRYVTCCTFSCDDSLLASGSNDKTVTIWD  188 (222)
Q Consensus       121 i~~l~~~~~~~-----~l~sg~~dg~I~iwd~~~~~~~~------~~~~-~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd  188 (222)
                      -+.++|+++++     ++++-+..+.|..||+.....+.      .+.+ +......++++.+|++.++....+.|.+||
T Consensus       174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~d  253 (314)
T d1pjxa_         174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG  253 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEe
Confidence            45788887764     34445667788888875332221      2222 122356799999999888877788999998


Q ss_pred             CC
Q psy16881        189 ML  190 (222)
Q Consensus       189 ~~  190 (222)
                      ..
T Consensus       254 p~  255 (314)
T d1pjxa_         254 PD  255 (314)
T ss_dssp             TT
T ss_pred             CC
Confidence            63

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.89  E-value=0.49  Score=35.09  Aligned_cols=71  Identities=6%  Similarity=-0.010  Sum_probs=49.4

Q ss_pred             CEEEEEEcCCCCE-EEEEeCCCcEEEEeCCC------Cc--eEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881        120 AVTSVRFNHKSSL-LVSGSVDKTVKLWDVPS------LT--CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML  190 (222)
Q Consensus       120 ~i~~l~~~~~~~~-l~sg~~dg~I~iwd~~~------~~--~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~  190 (222)
                      ..+.+.|+++++. +++-+..+.|..+++..      ++  ......+.......++++.+|++.++.-..+.|..||..
T Consensus       149 ~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~  228 (295)
T d2ghsa1         149 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD  228 (295)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred             CcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC
Confidence            3567899999985 45556677888887632      11  122333444567889999999988877777889999864

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.82  E-value=0.51  Score=34.99  Aligned_cols=57  Identities=18%  Similarity=0.163  Sum_probs=43.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEc-CCCCEEEE
Q psy16881        120 AVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS-CDDSLLAS  177 (222)
Q Consensus       120 ~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s-~~~~~l~s  177 (222)
                      ..-.++++.+|++.++.-..+.|..|| .+++.+..+......+++++|- ++.+.|+.
T Consensus       200 ~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         200 GMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             EEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred             cccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEeCCCCCEEEE
Confidence            345678899999777766778899999 5688888887766779999995 55555543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.12  Score=41.38  Aligned_cols=69  Identities=6%  Similarity=-0.065  Sum_probs=46.3

Q ss_pred             EEEEEEcCCCCEEEEEe---------CCCcEEEEeCCCCceEEE--eccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881        121 VTSVRFNHKSSLLVSGS---------VDKTVKLWDVPSLTCIKT--LESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM  189 (222)
Q Consensus       121 i~~l~~~~~~~~l~sg~---------~dg~I~iwd~~~~~~~~~--~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~  189 (222)
                      +....++|++++++...         ..+.+-++|+.++.....  .......+....|||+|+.||-.. ++.|.+.+.
T Consensus        63 ~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~  141 (465)
T d1xfda1          63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAH  141 (465)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESS
T ss_pred             cceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEec
Confidence            34567889998777654         246778889987654322  122233455678999999998775 557777776


Q ss_pred             C
Q psy16881        190 L  190 (222)
Q Consensus       190 ~  190 (222)
                      .
T Consensus       142 ~  142 (465)
T d1xfda1         142 V  142 (465)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=92.93  E-value=0.83  Score=34.51  Aligned_cols=67  Identities=18%  Similarity=0.282  Sum_probs=42.9

Q ss_pred             EEEcCCCCEEEEEeCC-CcEEEEeCCCCceEEE--eccCCccEEEEEEcCCCCEEEEeeCC------CeEEEEeCCC
Q psy16881        124 VRFNHKSSLLVSGSVD-KTVKLWDVPSLTCIKT--LESHTRYVTCCTFSCDDSLLASGSND------KTVTIWDMLA  191 (222)
Q Consensus       124 l~~~~~~~~l~sg~~d-g~I~iwd~~~~~~~~~--~~~~~~~V~~~~~s~~~~~l~s~s~D------~~i~lwd~~~  191 (222)
                      ..+.+++++++.|+.+ ..+.+||..+..-...  .... ..-..++..++|++++.++.+      ..+.+||..+
T Consensus        81 ~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          81 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             EEEecCCcEEEeecCCCcceeEecCccCccccccccccc-ccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            4566888988888665 5799999887654321  1111 122356667789988887743      2567777653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.30  E-value=0.42  Score=34.21  Aligned_cols=52  Identities=13%  Similarity=0.075  Sum_probs=38.0

Q ss_pred             EcCC--CCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEee
Q psy16881        126 FNHK--SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS  179 (222)
Q Consensus       126 ~~~~--~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s  179 (222)
                      ++|+  |+.++-.+ ++.|-+.|+..++. ..+..+...+...+|||||+.||...
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~   59 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRV   59 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEE
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEE
Confidence            4566  88766655 45677779987765 45556667788899999999998654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.70  E-value=1.5  Score=30.98  Aligned_cols=93  Identities=13%  Similarity=0.104  Sum_probs=52.4

Q ss_pred             EEEEEEcCCCC-EEEEEeCCCc--EEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCC-eEEE--EeCC----
Q psy16881        121 VTSVRFNHKSS-LLVSGSVDKT--VKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDK-TVTI--WDML----  190 (222)
Q Consensus       121 i~~l~~~~~~~-~l~sg~~dg~--I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~-~i~l--wd~~----  190 (222)
                      .....+++.++ .+++...++.  |.+.++.... ......+........|+|++..++..+.++ ...+  .|..    
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~  207 (269)
T d2hqsa1         129 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  207 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             ccccccccccccceecccccCCceEeeeeccccc-ceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc
Confidence            34445666665 4444445555  4444555443 233444556677788999999888766543 3333  3431    


Q ss_pred             -----------------CCeEEEeeC---CCcEEEEeCCCCccc
Q psy16881        191 -----------------ATLLASGSN---DKTVTIWDMRGNLSV  214 (222)
Q Consensus       191 -----------------~~~l~s~~~---d~~i~iwd~~~~~~~  214 (222)
                                       +..|+-.+.   ...|.++++.+....
T Consensus       208 ~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~  251 (269)
T d2hqsa1         208 QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA  251 (269)
T ss_dssp             EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE
T ss_pred             eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence                             334443332   235888898865443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.84  E-value=2.9  Score=31.21  Aligned_cols=170  Identities=12%  Similarity=0.189  Sum_probs=88.3

Q ss_pred             EEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCCcc
Q psy16881         34 RFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSET  113 (222)
Q Consensus        34 ~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (222)
                      -++|..+.||.=+ ..++++|++++.+.+....    .+..+..|+++......     -.....+..|.+........+
T Consensus        69 IMhP~~~IiALra-g~~LQiFnletK~klks~~----~~e~VvfWkWis~~~L~-----lVT~taVYHW~~~g~s~P~k~  138 (327)
T d1utca2          69 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT----MTDDVTFWKWISLNTVA-----LVTDNAVYHWSMEGESQPVKM  138 (327)
T ss_dssp             EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE----CSSCCCEEEESSSSEEE-----EECSSEEEEEESSSSCCCEEE
T ss_pred             hcCCCCcEEEEec-CCeEEEEehhHhhhhceEE----cCCCcEEEEecCCCEEE-----EEcCCceEEEcccCCCCchhh
Confidence            3678888887655 4689999999877665442    22345666654432110     001112333332111112223


Q ss_pred             ccccC----CCEEEEEEcCCCCEEEEEe-------CCCcEEEEeCCCCceEEEeccCCccEEEEEEcC--CC-CEEEEee
Q psy16881        114 VGRHT----SAVTSVRFNHKSSLLVSGS-------VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSC--DD-SLLASGS  179 (222)
Q Consensus       114 ~~~h~----~~i~~l~~~~~~~~l~sg~-------~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~--~~-~~l~s~s  179 (222)
                      +..|.    ..|..-+.+++.+.++..+       -.|.+.+|..+. +.-+.++||...-..+.+.-  +. .++..+.
T Consensus       139 fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~  217 (327)
T d1utca2         139 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAV  217 (327)
T ss_dssp             EECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEE
T ss_pred             hhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEEEE
Confidence            33332    4555566677777433322       246788998764 33455667654433333321  11 1222222


Q ss_pred             ---CCCeEEEEeCC-----------------------------------CCeEEEeeCCCcEEEEeCC-CCccc
Q psy16881        180 ---NDKTVTIWDML-----------------------------------ATLLASGSNDKTVTIWDMR-GNLSV  214 (222)
Q Consensus       180 ---~D~~i~lwd~~-----------------------------------~~~l~s~~~d~~i~iwd~~-~~~~~  214 (222)
                         ..+++.+-++.                                   -.++..-+.-|.|++||+. +.+.+
T Consensus       218 r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~  291 (327)
T d1utca2         218 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY  291 (327)
T ss_dssp             EETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEE
Confidence               22577777763                                   1345556677899999997 43443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.18  E-value=4.5  Score=31.20  Aligned_cols=32  Identities=28%  Similarity=0.324  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCeEEEe-----cCCCeEEEEeCCCCceE
Q psy16881         31 RCVRFSPDTRLLATG-----GDDETVTVWRSDDLSLI   62 (222)
Q Consensus        31 ~~l~~spdg~~l~tg-----s~Dg~i~iwd~~~~~~~   62 (222)
                      ...++|||++++|.+     +.-.+|+++|+.+++.+
T Consensus       128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~  164 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL  164 (430)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE
T ss_pred             cceEecCCCCEEEEEeccccCchheeEEeccCcceec
Confidence            345789999988732     22346789999877654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.59  E-value=1.6  Score=35.69  Aligned_cols=50  Identities=20%  Similarity=0.228  Sum_probs=34.5

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccE-EEEEEcCCCC-EEEE
Q psy16881        128 HKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV-TCCTFSCDDS-LLAS  177 (222)
Q Consensus       128 ~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V-~~~~~s~~~~-~l~s  177 (222)
                      ..+.+++.|+.||.++-+|.++++.+-++....... .=++|..+|+ +|+.
T Consensus       495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i  546 (582)
T d1flga_         495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence            457788899999999999999999998775422210 1144556775 4443

>d1skye2 b.49.1.1 (E:1-82) F1 ATP synthase beta subunit, domain 1 {Bacillus sp., strain ps3 [TaxId: 1409]}

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 1
species: Bacillus sp., strain ps3 [TaxId: 1409]

Probab=84.26  E-value=0.72  Score=27.30  Aligned_cols=36  Identities=19%  Similarity=0.511  Sum_probs=25.1

Q ss_pred             cCCCCCCCCCcccceEE--------------Eeeeeee-ccceEEEEEcCC
Q psy16881          3 EFPMGDGPSLFNGTELI--------------LRGSVHI-GSNMRCVRFSPD   38 (222)
Q Consensus         3 ~~~~~~~~~~~~~~~~~--------------~~~~~~~-~~~v~~l~~spd   38 (222)
                      +||.++-|++++.....              +.-..|+ ...|||+++++.
T Consensus        17 ~F~~~~lP~I~~AL~v~~~~~~~~~~~~~lvlEV~qhlg~~~VR~IAm~~T   67 (82)
T d1skye2          17 KFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMAST   67 (82)
T ss_dssp             EESTTCCCCTTEEEEEEECCSSTTCCCEEEEEEEEEEEETTEEEEEESSCC
T ss_pred             ECCCCCCCCcceEEEEEecCCCcccccceEEEEehhhcCCCeEEEEEecCc
Confidence            79999999999987543              2222344 456788888764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=83.19  E-value=3.3  Score=32.54  Aligned_cols=30  Identities=27%  Similarity=0.334  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCeEEE-ecCCCeEEEEeCCCC
Q psy16881         30 MRCVRFSPDTRLLAT-GGDDETVTVWRSDDL   59 (222)
Q Consensus        30 v~~l~~spdg~~l~t-gs~Dg~i~iwd~~~~   59 (222)
                      ...+.++|||+++++ |.-+.++.++|+++.
T Consensus       277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki  307 (459)
T d1fwxa2         277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  307 (459)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             CCceEECCCCCEEEEeCCcCCcEEEEEehhh
Confidence            445789999998764 555999999998753

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=82.72  E-value=7.4  Score=28.79  Aligned_cols=66  Identities=15%  Similarity=0.289  Sum_probs=42.9

Q ss_pred             EEEcCCCCEEEEEeCCC-----------cEEEEeCCCCceE--EE-eccCCccEEEEEEcCCCCEEEEeeCC-CeEEEEe
Q psy16881        124 VRFNHKSSLLVSGSVDK-----------TVKLWDVPSLTCI--KT-LESHTRYVTCCTFSCDDSLLASGSND-KTVTIWD  188 (222)
Q Consensus       124 l~~~~~~~~l~sg~~dg-----------~I~iwd~~~~~~~--~~-~~~~~~~V~~~~~s~~~~~l~s~s~D-~~i~lwd  188 (222)
                      .....+|++++.|+.+.           .+.+||..+++-.  .. -..+.......++.+++.+++.|+.+ ..+.+||
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence            33456678877777532           3678999876432  11 22333333456788999999988765 5899999


Q ss_pred             C
Q psy16881        189 M  189 (222)
Q Consensus       189 ~  189 (222)
                      .
T Consensus       105 ~  105 (387)
T d1k3ia3         105 S  105 (387)
T ss_dssp             G
T ss_pred             C
Confidence            6

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=81.89  E-value=3.3  Score=33.58  Aligned_cols=31  Identities=6%  Similarity=0.143  Sum_probs=26.9

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCceEEEecc
Q psy16881        128 HKSSLLVSGSVDKTVKLWDVPSLTCIKTLES  158 (222)
Q Consensus       128 ~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~  158 (222)
                      ..+.+|+.|+.||.++.+|.++++.+-++..
T Consensus       486 tagglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         486 TAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EcCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence            3578889999999999999999999987754