Psyllid ID: psy16898

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
Protein Sequence
MTLHFYKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSYDPSYATLIRGIRRLSSDGP
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHccccccEEEEEEEcccccccHHHHHHHHccccccccccEEEEEEEEEEEccccHHHHHHHHHHHHHHccccEEEEEccccccccEEccEEEEEEccccEEEEEEEcEEEEEEEccccccccccHHHHHHHHHccccccEEEEccccccccHHHHHHcccEEEEEEccHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHHHHccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHccccccEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccEcccccHcHccHHHHHHHcccccEEEEEEEEEccccccHHHHHHHHcccccccccccEEEEEEEEccHHHHHHHHHHHHHHHHHcccccEEEEEccccccccEccccEEEEEccccEEEEEEEccEEEEEEEcEEEEccccHHHHHHHHHHcccccEEEEEEcccccccHHHcccccEEEEccccHHHHHHHHHHHHHHHHHHHccEEEccccHHHHHHHHHHHHHHHcccccccccccccccEEEEcccHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccEEEEccccEEEEEEEEEEcccccc
Coil and Loop (DISEMBL)
MTLHFYKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLltydnfsaEDILKailpdnvamssftsvghivHCNLREELIEHKFIIGRVlldkvpscetvvNKAHTIDNTYRNFQMELLAGKDCMVTMhkengctfkmdFSKVYWNSRLSTEHERVTkevregdlvldvfagvgpfsipaaRRGAIvaandlnpdSYAWLQASIRLNErqvktpisatQKDARDFLQTDARAHLVRWsqsegnstggTAVARVIMNLPATAVEYVRYLKVLTreefgklsrppvlylycflpkmdletkkkiksydpsYATLIRGIRRLSSDGP
Flexible Loop (DISEMBL)
MTLHFYKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVrwsqsegnstggTAVARVIMNLPATAVEYVRYLKVLTreefgklsrppvLYLYCFLPKMDLetkkkiksydpsyatlirgirrlssdgp
Low Complexity Region (SEG)
MTLHFYKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSYDPSYATLIRGIRRLSSDGP
Disordered region (IsUnstruct)
**LHFYKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQV*************FLQTDARAHLVRWS******TGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSYDPSYATLIRGI********
Disordered Region (DISOPRED)
***HFYKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSYDPSYATLIRGIRRLSS***
Disordered Region (DISEMBL)
MTLHFYKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW*********GTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSYDPSYATLIRGIRRLSSDGP
Disordered Region (DISPRO)
MTLHFYKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSYDPSYATLIRGIRRLS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLHFYKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSYDPSYATLIRGIRRLSSDGP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	324	2.2.26 [Sep-21-2011]
Q16VC0	562	tRNA (guanine(37)-N1)-met	N/A	N/A	0.864	0.498	0.467	5e-66
Q7Q5Z3	556	tRNA (guanine(37)-N1)-met	yes	N/A	0.895	0.521	0.442	2e-65
B5DPF1	440	tRNA (guanine(37)-N1)-met	yes	N/A	0.811	0.597	0.461	1e-63
B8A5G9	480	tRNA (guanine(37)-N1)-met	yes	N/A	0.913	0.616	0.430	2e-63
E0VLV0	463	tRNA (guanine(37)-N1)-met	N/A	N/A	0.861	0.602	0.442	2e-62
Q8IRE4	457	tRNA (guanine(37)-N1)-met	yes	N/A	0.811	0.575	0.450	3e-62
E3WPP8	500	tRNA (guanine(37)-N1)-met	N/A	N/A	0.854	0.554	0.428	1e-60
F6VSS6	494	tRNA (guanine(37)-N1)-met	yes	N/A	0.780	0.512	0.457	1e-60
Q9D0C4	501	tRNA (guanine(37)-N1)-met	yes	N/A	0.759	0.491	0.456	4e-60
Q3MHN8	497	tRNA (guanine(37)-N1)-met	yes	N/A	0.762	0.496	0.452	8e-60

>sp|Q16VC0|TRM5_AEDAE tRNA (guanine(37)-N1)-methyltransferase OS=Aedes aegypti GN=AAEL009603 PE=3 SV=1

 Score =  251 bits (641), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 136/291 (46%), Positives = 195/291 (67%), Gaps = 11/291 (3%)

Query: 1   MTLHFYKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILP-DNV 59
           +TLH    ++ +ED  E     LE+  LT ++    ++ L YDN+  ++ILKA+LP D  
Sbjct: 94  ITLH-PSAVKTWEDLKEIG---LEDKGLTEENLVWEQMKLGYDNWRYDEILKAVLPEDKE 149

Query: 60  AMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELL 119
           A+S+F+ VGHIVH NL+E L+ +K +IG V+ DKV  C  VVNK  TIDNTYRNFQMELL
Sbjct: 150 ALSAFSKVGHIVHLNLKEHLLPYKNLIGTVIKDKVVGCRAVVNKLVTIDNTYRNFQMELL 209

Query: 120 AGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIP 179
            G++      KENGC F+ DFSKVYWNSRLSTEH RV + +++GD++LDV+AGVGPFSIP
Sbjct: 210 CGEEDYQVSLKENGCIFEFDFSKVYWNSRLSTEHGRVVEMLKKGDVLLDVYAGVGPFSIP 269

Query: 180 AARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239
           AA++G  V ANDLNPDSY  L  +   N  +V+  I+   K+  DF++ + +  ++  S+
Sbjct: 270 AAKKGYSVLANDLNPDSYKALVHNCAKN--KVQGRITCFNKNGIDFIKEEIKQFII--SK 325

Query: 240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCF 290
           ++ ++  GT    + MNLPA AVE++     L ++E  +L   P++++YCF
Sbjct: 326 NQDDTFTGT--IHITMNLPALAVEHLENYVGLLKDEQIELKHFPLVHVYCF 374

Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding.
Aedes aegypti (taxid: 7159)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2EC: 8

>sp|Q7Q5Z3|TRM5_ANOGA tRNA (guanine(37)-N1)-methyltransferase OS=Anopheles gambiae GN=AGAP006124 PE=3 SV=4

 Score =  249 bits (636), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/303 (44%), Positives = 194/303 (64%), Gaps = 13/303 (4%)

Query: 1   MTLHFYKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILP-DNV 59
           +TLH    +QK+ED  + N   LE   + ++     E+ L Y+N+  ++I KA+LP D  
Sbjct: 100 ITLHPL-AVQKWEDLADLN---LEKLDIGSEALVWEEIQLKYENWKYDEIFKAVLPADKE 155

Query: 60  AMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELL 119
           A+SSF+ +GHI+H NL++ L+ +K +IG+V+ DK+  C TVVNK+ +IDNTYRNFQMELL
Sbjct: 156 ALSSFSKIGHIIHLNLKDHLLPYKELIGQVICDKIADCRTVVNKSLSIDNTYRNFQMELL 215

Query: 120 AGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIP 179
            G+       KEN C F+ DFSKVYWN RLSTEHE++ K + + D + D++AGVGPF++P
Sbjct: 216 CGEPDYRVSVKENACLFEFDFSKVYWNPRLSTEHEKIVKMLAKTDTLFDLYAGVGPFTVP 275

Query: 180 AARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239
           AARRG  V ANDLNPDSY  L  +  LN  +V   ++   KDA DF++ + +  L+    
Sbjct: 276 AARRGCKVLANDLNPDSYEALVNNCALN--KVSKHVTCHNKDAVDFIKHEVKQALLEKCT 333

Query: 240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETK 299
            E  S  G     + MNLPA AVE++ +   L ++E   L + P++++YCF     +E K
Sbjct: 334 DE--SMEGD--IHITMNLPAMAVEHLVHFPGLLKDEDVVLRKQPLVHVYCFAK--GVEDK 387

Query: 300 KKI 302
           K+I
Sbjct: 388 KQI 390

Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding.

Anopheles gambiae (taxid: 7165)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

>sp|B5DPF1|TRM5_DROPS tRNA (guanine(37)-N1)-methyltransferase OS=Drosophila pseudoobscura pseudoobscura GN=GA23546 PE=3 SV=1

 Score =  243 bits (620), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 126/273 (46%), Positives = 183/273 (67%), Gaps = 10/273 (3%)

Query: 23  LENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNV-AMSSFTSVGHIVHCNLREELIE 81
           L+  ++T ++F+  E+ L Y+N+SA +ILK++LP+    M+S++ +GHIVH NLR+ L+ 
Sbjct: 86  LQKQQVTQENFSFVELELNYENWSANEILKSVLPEEEEGMTSYSRIGHIVHLNLRDHLLP 145

Query: 82  HKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFS 141
           +K +IG VL DK+P+C TVVNKA +IDNTYRNFQ+EL+ G+       KENG  F+ DFS
Sbjct: 146 YKQLIGEVLRDKLPNCRTVVNKASSIDNTYRNFQLELICGEAEYQVETKENGIPFEFDFS 205

Query: 142 KVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQ 201
           KVYWN RLSTEHER+ K ++ GD++ DVFAGVGPFS+PAA++   V ANDLNP S+ WLQ
Sbjct: 206 KVYWNPRLSTEHERIVKLLQPGDVLYDVFAGVGPFSVPAAKKRCHVLANDLNPVSFHWLQ 265

Query: 202 ASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA 261
            + + N  +  + I  + KD R+F+  + RA L++  +    S+  T    + MNLPA A
Sbjct: 266 HNAKRN--KCLSNIKMSNKDGREFILKELRADLLQRLRLTDTSSYAT---HITMNLPAMA 320

Query: 262 VEYVRYLKVL-TREEFGKLSRP---PVLYLYCF 290
           VE++   + L T  E   +S     P +++Y F
Sbjct: 321 VEFLDAFRGLYTDNELADISDAVVFPTVHVYSF 353

Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

>sp|B8A5G9|TRM5_DANRE tRNA (guanine(37)-N1)-methyltransferase OS=Danio rerio GN=trmt5 PE=2 SV=1

 Score =  243 bits (620), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/309 (43%), Positives = 193/309 (62%), Gaps = 13/309 (4%)

Query: 9   IQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAMSS-FTSV 67
           I   + FG    + L+ A    ++    E+ LTY+NF +E+IL+A+LP+   ++S F+ V
Sbjct: 129 ITSSDSFGSDEAEALK-AYSVPQEIQSYELKLTYENFKSEEILRAVLPEGQGVTSGFSRV 187

Query: 68  GHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVT 127
           GHI H NLRE  + ++ +IG+V++DK P    VVNK +TID+TYRNFQME+LAG+  MV 
Sbjct: 188 GHIAHMNLREHQLPYRKLIGQVIIDKNPGITCVVNKTNTIDSTYRNFQMEVLAGESNMVA 247

Query: 128 MHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIV 187
             +ENG  ++ DFS+VYWN RLSTEHER+   +  GD V+DVFAGVGPF+IPAARRG  V
Sbjct: 248 KVRENGVLYEFDFSRVYWNPRLSTEHERIVSLLHRGDTVVDVFAGVGPFAIPAARRGCAV 307

Query: 188 AANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGG 247
            ANDLNP+S+ WLQ + +LN  +V   I+ +  D RDF++   R  L    +       G
Sbjct: 308 LANDLNPESFRWLQHNAKLN--KVDQKITTSNLDGRDFIRGPVRERLPALMK-------G 358

Query: 248 TAVARVIMNLPATAVEYVRYLK-VLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSYD 306
           +    V+MNLPA A+E++   K +L  E    LS  P ++ Y F  + D + +  ++  +
Sbjct: 359 SQKIHVVMNLPALALEFLDAFKGLLDPEPDQSLSNLPQVHCYGFSKENDPQ-RDVVERAE 417

Query: 307 PSYATLIRG 315
            S  T ++G
Sbjct: 418 ASLKTNLQG 426

Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

>sp|E0VLV0|TRM5_PEDHC tRNA (guanine(37)-N1)-methyltransferase OS=Pediculus humanus subsp. corporis GN=PHUM294360 PE=3 SV=1

 Score =  239 bits (611), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 131/296 (44%), Positives = 187/296 (63%), Gaps = 17/296 (5%)

Query: 8   VIQKFEDFGEFNVKV-LENAKLTAKDFTHAEVLLTYDNFSAEDILKAILP-DNVAMSSFT 65
           +I+ F+DF E N K+ L+N  +T   F++  + L YD +   ++LKAILP D   ++S++
Sbjct: 61  LIKNFDDFSE-NTKIELKNLGITKDMFSNEIITLDYDYWKLNEVLKAILPKDEPPLTSYS 119

Query: 66  SVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCM 125
            +GHIVH NL++ LI++K+II  VL DKV   +TVVNK + IDN YRNF+ME+L G+   
Sbjct: 120 IIGHIVHLNLKDHLIDYKYIIAEVLKDKVSVAKTVVNKTNKIDNVYRNFEMEVLCGEPDF 179

Query: 126 VTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGA 185
           +    E    F+ DFSKVYWN RLSTEH R+   V  GD++ DVFAGVGPFSI AA++  
Sbjct: 180 IASVIEYDTKFEFDFSKVYWNPRLSTEHNRIVNLVNHGDVLFDVFAGVGPFSIRAAKKNC 239

Query: 186 IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR-WSQSEGNS 244
           +V ANDLNPDS+ WL  +I LN ++ K  I+   KD  DF+  D ++++++ WS S  N 
Sbjct: 240 LVHANDLNPDSFKWLNHNINLN-KKAKGWITTYNKDGSDFILNDFKSNMLKIWSDS--NF 296

Query: 245 TGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRP-------PVLYLYCFLPK 293
            G      V+MNLPA A+ +++Y K L  E+  K  +        P++Y Y F  K
Sbjct: 297 LGQI---HVVMNLPAKALSFLKYFKGLFDEQDLKEIKKDHLEKHLPIIYCYFFAKK 349

Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding.

Pediculus humanus subsp. corporis (taxid: 121224)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

>sp|Q8IRE4|TRM5_DROME tRNA (guanine(37)-N1)-methyltransferase OS=Drosophila melanogaster GN=CG32281 PE=2 SV=2

 Score =  238 bits (608), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 123/273 (45%), Positives = 181/273 (66%), Gaps = 10/273 (3%)

Query: 23  LENAKLTAKDFTHAEVLLTYDNFSAEDILKAILP-DNVAMSSFTSVGHIVHCNLREELIE 81
           L+  K+ A++F+ A++ L Y+N+SA +ILK++LP +   ++S++ +GHI H NLR+ L+ 
Sbjct: 109 LQRQKVNAENFSFADLELRYENWSANEILKSVLPTEEEGLTSYSRIGHIAHLNLRDHLLP 168

Query: 82  HKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFS 141
           +K +IG+VL DK+P+C TVVNKA +IDNTYRNFQ+EL+ G        KENG  F+ DFS
Sbjct: 169 YKQLIGQVLRDKLPNCRTVVNKASSIDNTYRNFQLELICGDPDYQVETKENGVPFEFDFS 228

Query: 142 KVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQ 201
           KVYWN RLSTEHER+ K ++  D++ DVFAGVGPFSIPAA++   V ANDLNP+S+ WLQ
Sbjct: 229 KVYWNPRLSTEHERIVKMLKSDDVLYDVFAGVGPFSIPAAKKRCHVLANDLNPESFRWLQ 288

Query: 202 ASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA 261
            + + N  +    I  + KD R F+  + R  L++   +   +T G  +    MNLPA A
Sbjct: 289 HNAKRN--KCLPNIKMSNKDGRQFIVEELREDLLKRLCTTDTTTYGIHIT---MNLPAMA 343

Query: 262 VEYVRYLKVL-TREEFGKLSRP---PVLYLYCF 290
           VE++   + L + +E  +L      P +++Y F
Sbjct: 344 VEFLDAFRGLYSADELAQLPTNVCYPTVHVYSF 376

Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

>sp|E3WPP8|TRM5_ANODA tRNA (guanine(37)-N1)-methyltransferase OS=Anopheles darlingi GN=AND_03887 PE=3 SV=1

 Score =  233 bits (595), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 126/294 (42%), Positives = 186/294 (63%), Gaps = 17/294 (5%)

Query: 1   MTLHFYKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNV- 59
           +TLH   V Q +ED     V+ L+   +        E+ L+Y+N+  + ILKA+LP+N  
Sbjct: 66  ITLHPIPVKQ-WEDLP---VEPLKELGIEKDCLVWEEIKLSYENYKYDLILKAVLPENQE 121

Query: 60  AMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELL 119
            +S+F+ +GHI+H NL+  L+ ++ +IG VL+DKV  C TVVNK+++I NTYRNF+MEL+
Sbjct: 122 GLSAFSKIGHIIHLNLKNHLMPYRRLIGEVLMDKVADCRTVVNKSNSIQNTYRNFEMELI 181

Query: 120 AGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIP 179
            G        KENGCT+K +FS+VYWN RLSTEH+++T  + EGDL+ D++AGVGPF++P
Sbjct: 182 CGVPEYEVSIKENGCTYKFNFSRVYWNPRLSTEHQKITDMLEEGDLLYDLYAGVGPFTVP 241

Query: 180 AARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW-- 237
           AA+RG  V ANDLNPDSY+ L  +  LN  +V   +     DA DF++ + R  L+    
Sbjct: 242 AAKRGCTVIANDLNPDSYSALVINCGLN--KVMRNVKCYNMDAVDFIKVELRNDLLAKLA 299

Query: 238 -SQSEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCF 290
             + +GN         + MNLPA AVE++ +   L   E  +L   P++++YCF
Sbjct: 300 DDKFQGN-------IHITMNLPAMAVEHLVHFPGLFSGESIELRIKPLVHVYCF 346

Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding.

Anopheles darlingi (taxid: 43151)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

>sp|F6VSS6|TRM5_XENTR tRNA (guanine(37)-N1)-methyltransferase OS=Xenopus tropicalis GN=trmt5 PE=3 SV=1

 Score =  233 bits (594), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 118/258 (45%), Positives = 170/258 (65%), Gaps = 5/258 (1%)

Query: 34  THAEVLLTYDNFSAEDILKAILPDNVAMSS-FTSVGHIVHCNLREELIEHKFIIGRVLLD 92
           +  E+ LTY+NF  E+IL+A+LP    ++S F+ VGHI H NLR+  + +K +IG+V+LD
Sbjct: 158 SQYELQLTYENFKCEEILRAVLPKGQDVTSGFSRVGHIAHMNLRDHQLPYKNVIGQVILD 217

Query: 93  KVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTE 152
           K P   +VVNK +TID+TYRNFQME+LAG++ M+T  KEN  T++ DFSKVYWN RL TE
Sbjct: 218 KNPGITSVVNKTNTIDSTYRNFQMEVLAGEENMITKVKENYVTYEFDFSKVYWNPRLGTE 277

Query: 153 HERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVK 212
           H R+   ++  D++ DVFAGVGPF++PAA++   V ANDLNP+SY WL  + +LN  +V+
Sbjct: 278 HNRIIGFLKARDVLFDVFAGVGPFAVPAAKKNCTVYANDLNPESYKWLLHNCKLN--KVE 335

Query: 213 TPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKVLT 272
             + A   D RDF++T  +  L+++  ++  S        + MNLPA AVE++   K L 
Sbjct: 336 KRVQAFNTDGRDFIKTTIKKELLKY--ADMPSAEEKPSLHIAMNLPALAVEFLDAFKNLL 393

Query: 273 REEFGKLSRPPVLYLYCF 290
            EE       P ++ Y F
Sbjct: 394 EEEPCNSFILPTIHCYSF 411

Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

>sp|Q9D0C4|TRM5_MOUSE tRNA (guanine(37)-N1)-methyltransferase OS=Mus musculus GN=Trmt5 PE=2 SV=1

 Score =  231 bits (590), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 115/252 (45%), Positives = 162/252 (64%), Gaps = 6/252 (2%)

Query: 40  LTYDNFSAEDILKAILPDNVAMSS-FTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCE 98
           LTY+NF +E+ILKA+LP+   ++S F+ VGHI H NLR+  +  K +IG+V++DK P   
Sbjct: 168 LTYENFKSEEILKAVLPEGQDVTSGFSRVGHIAHLNLRDHQLPFKHLIGQVMVDKNPGIT 227

Query: 99  TVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTK 158
           + VNK   IDNTYRNFQME+L G++ M+T  +EN  T++ DFSKVYWN RLSTEH R+T+
Sbjct: 228 SAVNKTSNIDNTYRNFQMEVLCGEENMLTKVRENNYTYEFDFSKVYWNPRLSTEHGRITE 287

Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISAT 218
            +  GD++ DVFAGVGPF+IPAAR+   V ANDLNP+S+ WL  + +LN  +V   +   
Sbjct: 288 LLNPGDVLFDVFAGVGPFAIPAARKNCTVFANDLNPESHKWLLHNCKLN--KVDQKVKVF 345

Query: 219 QKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGK 278
             D +DF+Q   R  L+      G S        ++MNLPA A+E++   + L   +   
Sbjct: 346 NMDGKDFIQGPVREELM---LRLGLSAEAKPSVHIVMNLPAKAIEFLSVFRSLLDGQPCS 402

Query: 279 LSRPPVLYLYCF 290
               P ++ YCF
Sbjct: 403 TELLPTVHCYCF 414

Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

>sp|Q3MHN8|TRM5_BOVIN tRNA (guanine(37)-N1)-methyltransferase OS=Bos taurus GN=TRMT5 PE=2 SV=1

 Score =  231 bits (588), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 114/252 (45%), Positives = 167/252 (66%), Gaps = 5/252 (1%)

Query: 40  LTYDNFSAEDILKAILPDNVAMSS-FTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCE 98
           LTY+NF +E+IL+A+LP+   ++S F+ VGHI H NLR+  + +K +IG+V++DK P   
Sbjct: 173 LTYENFKSEEILRAVLPEGQDVTSGFSRVGHIAHLNLRDHQLPYKHLIGQVMIDKNPGIT 232

Query: 99  TVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTK 158
           + VNK + IDNTYRNF+ME+L+G++ M+T  +EN  T++ DFSKVYWN RLSTEH R+T+
Sbjct: 233 SAVNKINNIDNTYRNFEMEVLSGEENMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITE 292

Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISAT 218
            ++ GD++ DVFAGVGPF+IPAA++   V ANDLNP+S+ WL  + +LN  +V   +   
Sbjct: 293 LLKPGDVLFDVFAGVGPFAIPAAKKKCTVFANDLNPESHKWLLHNCKLN--KVDQKVKVF 350

Query: 219 QKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGK 278
             D RDFLQ   R  L++  Q    S        ++MNLPA A+E++   K L   +   
Sbjct: 351 NLDGRDFLQGPVREELMQ--QLGPLSKERKHSVHIVMNLPAKAIEFLSAFKALLEGQPCG 408

Query: 279 LSRPPVLYLYCF 290
               P+++ Y F
Sbjct: 409 SELLPIVHCYSF 420

Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
195014269	436	GH16197 [Drosophila grimshawi] gi|193897	0.864	0.642	0.474	2e-66
195127431	435	GI13347 [Drosophila mojavensis] gi|19391	0.811	0.604	0.487	1e-65
357611008	420	hypothetical protein KGM_09993 [Danaus p	0.861	0.664	0.444	1e-64
91094613	507	PREDICTED: similar to CG32281 CG32281-PA	0.743	0.475	0.482	2e-64
195376371	438	GJ13175 [Drosophila virilis] gi|19415412	0.808	0.598	0.485	3e-64
157123734	562	hypothetical protein AaeL_AAEL009603 [Ae	0.864	0.498	0.467	3e-64
195440939	449	GK19130 [Drosophila willistoni] gi|19416	0.790	0.570	0.466	1e-63
158295382	556	AGAP006124-PA [Anopheles gambiae str. PE	0.895	0.521	0.442	1e-63
194865986	457	GG15106 [Drosophila erecta] gi|190653485	0.811	0.575	0.454	5e-62
126631509	475	LOC564078 protein [Danio rerio]	0.913	0.623	0.430	8e-62

>gi|195014269|ref|XP_001983992.1| GH16197 [Drosophila grimshawi] gi|193897474|gb|EDV96340.1| GH16197 [Drosophila grimshawi]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 137/289 (47%), Positives = 188/289 (65%), Gaps = 9/289 (3%)

Query: 13  EDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILP-DNVAMSSFTSVGHIV 71
           +++    VK LE   +TA +F H E+ L+Y+N+SA +ILK++LP D   ++SF+ +GHIV
Sbjct: 76  KNWESLPVKELEEQHVTAANFCHDELELSYENWSANEILKSVLPADEEGLTSFSRIGHIV 135

Query: 72  HCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKE 131
           H NLR+ L+ +K +IG VL DK+P+C TVVNKA +IDNTYRNFQ+EL+ G        KE
Sbjct: 136 HLNLRDHLLPYKQLIGEVLRDKLPNCRTVVNKAASIDNTYRNFQLELICGDAEYQVETKE 195

Query: 132 NGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAAND 191
           NG  F+ DFSKVYWN RLSTEHER+ K ++ GD++ DVFAGVGPFS+PAA++   V AND
Sbjct: 196 NGVPFEFDFSKVYWNPRLSTEHERIVKLLQTGDVLYDVFAGVGPFSVPAAKKRCQVLAND 255

Query: 192 LNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV-RWSQSEGNSTGGTAV 250
           LNP SY WLQ + + N  +    I    KD R+F++ + R  L+ RW     NS      
Sbjct: 256 LNPVSYHWLQHNAKRN--KCLAHIQMFNKDGREFIRKELRDDLLQRWKSPPANSYN---- 309

Query: 251 ARVIMNLPATAVEYVRYLKVL-TREEFGKLSRPPVLYLYCFLPKMDLET 298
             + MNLPA AVE++   + L   EE  K+   PV+++Y F    D +T
Sbjct: 310 IHITMNLPALAVEFLDAFRDLYADEELPKVLNYPVVHVYSFAKGEDTKT 358

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195127431|ref|XP_002008172.1| GI13347 [Drosophila mojavensis] gi|193919781|gb|EDW18648.1| GI13347 [Drosophila mojavensis]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 132/271 (48%), Positives = 183/271 (67%), Gaps = 8/271 (2%)

Query: 23  LENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNV-AMSSFTSVGHIVHCNLREELIE 81
           LE  ++T ++F+HA++ LTY+N+SA +ILK++LP+N   +SSF+ +GHIVH NLR+ L+ 
Sbjct: 86  LEQQQVTQENFSHADLELTYENWSANEILKSVLPENEEGLSSFSRIGHIVHLNLRDHLLP 145

Query: 82  HKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFS 141
           +K +IG VL DK+P+C TVVNKA +IDNTYRNFQ+EL+ G+       KENG  F+ DFS
Sbjct: 146 YKQLIGEVLRDKLPNCRTVVNKAASIDNTYRNFQLELICGEPDYQVETKENGVPFEFDFS 205

Query: 142 KVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQ 201
           KVYWN RLSTEHER+   ++  D++ DVFAGVGPFS+PAA++   V ANDLNP SY WLQ
Sbjct: 206 KVYWNPRLSTEHERIVNILKPNDVLYDVFAGVGPFSVPAAKKRCKVLANDLNPVSYQWLQ 265

Query: 202 ASIRLNERQVKTPISATQKDARDFLQTDARAHLV-RWSQSEGNSTGGTAVARVIMNLPAT 260
            + + N  +  T I    KD R+F+  D R  L+ RW  S   +        + MNLPA 
Sbjct: 266 HNAKRN--KCLTHIKMFNKDGREFILKDLREDLLERWRTS---AAAEPYNIHITMNLPAM 320

Query: 261 AVEYVRYLKVL-TREEFGKLSRPPVLYLYCF 290
           AVE++   + L T EE  +    P++++Y F
Sbjct: 321 AVEFLDAFRGLYTPEELPEEPSYPLVHVYSF 351

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357611008|gb|EHJ67266.1| hypothetical protein KGM_09993 [Danaus plexippus]

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/286 (44%), Positives = 185/286 (64%), Gaps = 7/286 (2%)

Query: 9   IQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAM-SSFTSV 67
           + K+ D  + +   L+N  ++ KDF   E+ LTYDNF  + I K++LP+N  + S F+ +
Sbjct: 66  VDKWSDIAKEDQTKLDNYDISEKDFDKHEIQLTYDNFKYDTIFKSVLPENEEIVSGFSQI 125

Query: 68  GHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAG-KDCMV 126
           GHI+H NLRE L+E+  +IG+VL+DK+ +C TVVNK++ IDNTYRNF ME++AG KD MV
Sbjct: 126 GHIIHLNLREHLLEYSQLIGQVLVDKIKTCRTVVNKSNIIDNTYRNFSMEVIAGDKDFMV 185

Query: 127 TMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAI 186
           T+ KEN C F  DFSKVYWN RL  EHER+ + ++ GD++ DVF GVGPF+IPAA+    
Sbjct: 186 TV-KENRCNFTFDFSKVYWNPRLCKEHERILELLQSGDVLFDVFCGVGPFAIPAAKYKCR 244

Query: 187 VAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTG 246
           V ANDLNP+S+ WL  + ++N+  +     +   D +DFL  + +  ++           
Sbjct: 245 VFANDLNPESFKWLNHNAKINKLNMNN-FKSYNIDGKDFLCNNFKTFIIDCCNGTEKLEP 303

Query: 247 GTAVARVIMNLPATAVEYVRYLKVLTREEFG--KLSRPPVLYLYCF 290
           G  +  + MNLPA AVE++R+ K L  E     KL+   ++Y+YCF
Sbjct: 304 GAKI-HLTMNLPALAVEFLRHFKGLISESAAENKLTNDIIVYVYCF 348

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91094613|ref|XP_968719.1| PREDICTED: similar to CG32281 CG32281-PA [Tribolium castaneum] gi|270016438|gb|EFA12884.1| hypothetical protein TcasGA2_TC011563 [Tribolium castaneum]

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 12/253 (4%)

Query: 40  LTYDNFSAEDILKAILPDNV-AMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCE 98
           L Y+NFS E + +A+LP NV  MSSFT VGHIVH NLRE L+  K IIG+VL DKVP+C 
Sbjct: 105 LNYENFSIEGVFRAVLPPNVEGMSSFTKVGHIVHVNLREHLVPFKDIIGQVLFDKVPNCR 164

Query: 99  TVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTK 158
           TVVNK  +IDNTYRNFQME+L G++   T  +EN C F+ DF+KVYWNSRL TEHER+  
Sbjct: 165 TVVNKVGSIDNTYRNFQMEVLRGENDTQTHVRENKCVFEFDFAKVYWNSRLCTEHERIVN 224

Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISAT 218
            +  GD+V DVFAGVGPFS+P AR+   V ANDLNP+S+ WL  + ++N +  +    + 
Sbjct: 225 MIESGDVVFDVFAGVGPFSVPLARKKCQVFANDLNPESFKWLNHNFKIN-KVGENYFKSY 283

Query: 219 QKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYV-RYLKVLTREEFG 277
            KD R+F+  + +  L ++S              ++MNLPA AV+++  ++ + + +E  
Sbjct: 284 NKDGREFILGEVKELLPKFSAKN---------VFILMNLPALAVDFLTTFVDLFSNDELP 334

Query: 278 KLSRPPVLYLYCF 290
           +  + PV+ +YCF
Sbjct: 335 EFGKHPVVVVYCF 347

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195376371|ref|XP_002046970.1| GJ13175 [Drosophila virilis] gi|194154128|gb|EDW69312.1| GJ13175 [Drosophila virilis]

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 133/274 (48%), Positives = 182/274 (66%), Gaps = 12/274 (4%)

Query: 23  LENAKLTAKDFTHAEVLLTYDNFSAEDILKAILP-DNVAMSSFTSVGHIVHCNLREELIE 81
           LE  ++T+++F HAE+ L Y+N+SA +ILK++LP D   +SSF+ +GHIVH NLR+ L+ 
Sbjct: 86  LEQQQVTSENFCHAELELGYENWSANEILKSVLPADEEGLSSFSRIGHIVHLNLRDHLLP 145

Query: 82  HKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFS 141
           +K +IG+VL DK+P+C TVVNKA +IDNTYRNFQ+EL+ G+       KENG  F+ DFS
Sbjct: 146 YKQLIGKVLRDKLPNCRTVVNKAASIDNTYRNFQLELICGEPEYQVETKENGVPFEFDFS 205

Query: 142 KVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQ 201
           KVYWN RLSTEHER+ K ++  D++ DVFAGVGPFS+PAA++   V ANDLNP SY WLQ
Sbjct: 206 KVYWNPRLSTEHERIVKLLQPNDVLYDVFAGVGPFSVPAAKKRCQVLANDLNPVSYHWLQ 265

Query: 202 ASIRLNERQVKTPISATQKDARDFLQTDARAHLV-RWSQSEGNSTGGTAVARVIMNLPAT 260
            + + N+  V   I    KD R+F+  + R  L+ RW     N         + MNLPA 
Sbjct: 266 HNAKRNKCLVH--IKMYNKDGREFILKELREDLLERWR----NPAATPYSIHITMNLPAM 319

Query: 261 AVEYVRYLKVL-TREEFGKLSRP---PVLYLYCF 290
           AVE++   + L T EE  +L      P +++Y F
Sbjct: 320 AVEFLDAFRGLYTVEELAELPASLNYPQVHVYSF 353

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157123734|ref|XP_001653868.1| hypothetical protein AaeL_AAEL009603 [Aedes aegypti] gi|122105557|sp|Q16VC0.1|TRM5_AEDAE RecName: Full=tRNA (guanine(37)-N1)-methyltransferase; AltName: Full=M1G-methyltransferase; AltName: Full=tRNA [GM37] methyltransferase; AltName: Full=tRNA methyltransferase 5 homolog; Flags: Precursor gi|108874288|gb|EAT38513.1| AAEL009603-PA [Aedes aegypti]

 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 136/291 (46%), Positives = 195/291 (67%), Gaps = 11/291 (3%)

Query: 1   MTLHFYKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILP-DNV 59
           +TLH    ++ +ED  E     LE+  LT ++    ++ L YDN+  ++ILKA+LP D  
Sbjct: 94  ITLH-PSAVKTWEDLKEIG---LEDKGLTEENLVWEQMKLGYDNWRYDEILKAVLPEDKE 149

Query: 60  AMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELL 119
           A+S+F+ VGHIVH NL+E L+ +K +IG V+ DKV  C  VVNK  TIDNTYRNFQMELL
Sbjct: 150 ALSAFSKVGHIVHLNLKEHLLPYKNLIGTVIKDKVVGCRAVVNKLVTIDNTYRNFQMELL 209

Query: 120 AGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIP 179
            G++      KENGC F+ DFSKVYWNSRLSTEH RV + +++GD++LDV+AGVGPFSIP
Sbjct: 210 CGEEDYQVSLKENGCIFEFDFSKVYWNSRLSTEHGRVVEMLKKGDVLLDVYAGVGPFSIP 269

Query: 180 AARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239
           AA++G  V ANDLNPDSY  L  +   N  +V+  I+   K+  DF++ + +  ++  S+
Sbjct: 270 AAKKGYSVLANDLNPDSYKALVHNCAKN--KVQGRITCFNKNGIDFIKEEIKQFII--SK 325

Query: 240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCF 290
           ++ ++  GT    + MNLPA AVE++     L ++E  +L   P++++YCF
Sbjct: 326 NQDDTFTGT--IHITMNLPALAVEHLENYVGLLKDEQIELKHFPLVHVYCF 374

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195440939|ref|XP_002068292.1| GK19130 [Drosophila willistoni] gi|194164377|gb|EDW79278.1| GK19130 [Drosophila willistoni]

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 126/270 (46%), Positives = 183/270 (67%), Gaps = 14/270 (5%)

Query: 28  LTAKDFTHAEVLLTYDNFSAEDILKAILP-DNVAMSSFTSVGHIVHCNLREELIEHKFII 86
           +T ++F+ +++ L YDN++A +ILK+ILP +   ++S++ +GHIVH NLR+ L+  K II
Sbjct: 101 ITEQNFSFSQLELVYDNWTANEILKSILPLEEEGLTSYSRIGHIVHLNLRDHLLPFKSII 160

Query: 87  GRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWN 146
           G++LLDK+P+C +VVNKA TIDNTYRNFQMEL+ G+D      KENG  F+ DFS+VYWN
Sbjct: 161 GQILLDKLPNCRSVVNKASTIDNTYRNFQMELICGQDDYQVETKENGIPFEFDFSQVYWN 220

Query: 147 SRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRL 206
            RLSTEHER+ K ++ GD++ DVFAGVGPFS+PAA++   V ANDLNP S+ WLQ + + 
Sbjct: 221 PRLSTEHERIVKLLQPGDVLYDVFAGVGPFSVPAAKKRCQVMANDLNPHSFQWLQHNAKR 280

Query: 207 NERQVKTPISATQKDARDFLQTDARAHLV-RWSQSEGNSTGGTAVARVIMNLPATAVEYV 265
           N  +    I    KD R+F+  D +  L+ RW +S+ N +       + MNLPA AVE++
Sbjct: 281 N--KCLNNIQMFNKDGREFILKDLQRDLLERWHKSDSNYS-----IHITMNLPAMAVEFL 333

Query: 266 RYLKVLTRE-EFGKLSRP----PVLYLYCF 290
              + L  + +   LS+     P +++Y F
Sbjct: 334 DAFRALYNDKDLHDLSKDLLNYPTVHVYAF 363

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295382|ref|XP_316184.4| AGAP006124-PA [Anopheles gambiae str. PEST] gi|363805633|sp|Q7Q5Z3.4|TRM5_ANOGA RecName: Full=tRNA (guanine(37)-N1)-methyltransferase; AltName: Full=M1G-methyltransferase; AltName: Full=tRNA [GM37] methyltransferase; AltName: Full=tRNA methyltransferase 5 homolog; Flags: Precursor gi|157016010|gb|EAA10891.4| AGAP006124-PA [Anopheles gambiae str. PEST]

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 134/303 (44%), Positives = 194/303 (64%), Gaps = 13/303 (4%)

Query: 1   MTLHFYKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILP-DNV 59
           +TLH    +QK+ED  + N   LE   + ++     E+ L Y+N+  ++I KA+LP D  
Sbjct: 100 ITLHPL-AVQKWEDLADLN---LEKLDIGSEALVWEEIQLKYENWKYDEIFKAVLPADKE 155

Query: 60  AMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELL 119
           A+SSF+ +GHI+H NL++ L+ +K +IG+V+ DK+  C TVVNK+ +IDNTYRNFQMELL
Sbjct: 156 ALSSFSKIGHIIHLNLKDHLLPYKELIGQVICDKIADCRTVVNKSLSIDNTYRNFQMELL 215

Query: 120 AGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIP 179
            G+       KEN C F+ DFSKVYWN RLSTEHE++ K + + D + D++AGVGPF++P
Sbjct: 216 CGEPDYRVSVKENACLFEFDFSKVYWNPRLSTEHEKIVKMLAKTDTLFDLYAGVGPFTVP 275

Query: 180 AARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239
           AARRG  V ANDLNPDSY  L  +  LN  +V   ++   KDA DF++ + +  L+    
Sbjct: 276 AARRGCKVLANDLNPDSYEALVNNCALN--KVSKHVTCHNKDAVDFIKHEVKQALLEKCT 333

Query: 240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETK 299
            E  S  G     + MNLPA AVE++ +   L ++E   L + P++++YCF     +E K
Sbjct: 334 DE--SMEGD--IHITMNLPAMAVEHLVHFPGLLKDEDVVLRKQPLVHVYCFAK--GVEDK 387

Query: 300 KKI 302
           K+I
Sbjct: 388 KQI 390

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194865986|ref|XP_001971702.1| GG15106 [Drosophila erecta] gi|190653485|gb|EDV50728.1| GG15106 [Drosophila erecta]

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 124/273 (45%), Positives = 184/273 (67%), Gaps = 10/273 (3%)

Query: 23  LENAKLTAKDFTHAEVLLTYDNFSAEDILKAILP-DNVAMSSFTSVGHIVHCNLREELIE 81
           L+  ++TA++F+ A++ L+Y+N+SA +ILK++LP +   ++S++ +GHI H NLR+ L+ 
Sbjct: 109 LQKREVTAENFSFADLELSYENWSANEILKSVLPTEEEGLTSYSRIGHIAHLNLRDHLLP 168

Query: 82  HKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFS 141
           +K +IG+VL DK+P+C TVVNKA +IDNTYRNFQ+EL+ G        KENG  F+ DFS
Sbjct: 169 YKQLIGQVLRDKLPNCRTVVNKASSIDNTYRNFQLELICGDPEYQVETKENGVPFEFDFS 228

Query: 142 KVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQ 201
           KVYWN RLSTEHER+ K ++  D++ DVFAGVGPFS+PAA++G  V ANDLNP+S+ WLQ
Sbjct: 229 KVYWNPRLSTEHERIVKLLKSDDVLYDVFAGVGPFSVPAAKKGCHVLANDLNPESFRWLQ 288

Query: 202 ASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA 261
            + + N  +    I    KD R F+  + R  L++  ++   +T    +    MNLPATA
Sbjct: 289 HNAKRN--KCLPNIQMCNKDGRQFIVEELREDLLKRLRTTDTTTYDIHIT---MNLPATA 343

Query: 262 VEYVRYLKVLTR-EEFGKLSRP---PVLYLYCF 290
           VE++   + L + EE  +L      P +++Y F
Sbjct: 344 VEFLDAFRGLYKTEELAQLPENVCYPTVHVYSF 376

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|126631509|gb|AAI33896.1| LOC564078 protein [Danio rerio]

 Score =  243 bits (620), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 133/309 (43%), Positives = 193/309 (62%), Gaps = 13/309 (4%)

Query: 9   IQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAMSS-FTSV 67
           I   + FG    + L+ A    ++    E+ LTY+NF +E+IL+A+LP+   ++S F+ V
Sbjct: 124 ITSSDSFGSDEAEALK-AYSVPQEIQSYELKLTYENFKSEEILRAVLPEGQGVTSGFSRV 182

Query: 68  GHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVT 127
           GHI H NLRE  + ++ +IG+V++DK P    VVNK +TID+TYRNFQME+LAG+  MV 
Sbjct: 183 GHIAHMNLREHQLPYRKLIGQVIIDKNPGITCVVNKTNTIDSTYRNFQMEVLAGESNMVA 242

Query: 128 MHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIV 187
             +ENG  ++ DFS+VYWN RLSTEHER+   +  GD V+DVFAGVGPF+IPAARRG  V
Sbjct: 243 KVRENGVLYEFDFSRVYWNPRLSTEHERIVSLLHRGDTVVDVFAGVGPFAIPAARRGCAV 302

Query: 188 AANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGG 247
            ANDLNP+S+ WLQ + +LN  +V   I+ +  D RDF++   R  L    +       G
Sbjct: 303 LANDLNPESFRWLQHNAKLN--KVDQKITTSNLDGRDFIRGPVRERLPALMK-------G 353

Query: 248 TAVARVIMNLPATAVEYVRYLK-VLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSYD 306
           +    V+MNLPA A+E++   K +L  E    LS  P ++ Y F  + D + +  ++  +
Sbjct: 354 SQKIHVVMNLPALALEFLDAFKGLLDPEPDQSLSNLPQVHCYGFSKENDPQ-RDVVERAE 412

Query: 307 PSYATLIRG 315
            S  T ++G
Sbjct: 413 ASLKTNLQG 421

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
ZFIN|ZDB-GENE-030131-5978	481	trmt5 "TRM5 tRNA methyltransfe	0.913	0.615	0.427	9.3e-59
FB|FBgn0052281	457	CG32281 [Drosophila melanogast	0.811	0.575	0.450	1.9e-58
RGD|1306567	499	Trmt5 "tRNA methyltransferase	0.774	0.503	0.463	5.1e-58
MGI|MGI:1923607	501	Trmt5 "TRM5 tRNA methyltransfe	0.873	0.564	0.412	2.5e-56
UNIPROTKB|F1PN08	503	TRMT5 "Uncharacterized protein	0.861	0.554	0.416	5.3e-56
UNIPROTKB|J9P199	497	TRMT5 "Uncharacterized protein	0.861	0.561	0.416	5.3e-56
UNIPROTKB|J9P7M6	495	TRMT5 "Uncharacterized protein	0.861	0.563	0.416	5.3e-56
UNIPROTKB|Q3MHN8	497	TRMT5 "tRNA (guanine(37)-N1)-m	0.861	0.561	0.412	1.1e-55
UNIPROTKB|I3L8T3	499	TRMT5 "Uncharacterized protein	0.861	0.559	0.416	1.4e-55
UNIPROTKB|F1NFG8	500	TRMT5 "Uncharacterized protein	0.845	0.548	0.434	6.1e-55

ZFIN|ZDB-GENE-030131-5978 trmt5 "TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 132/309 (42%), Positives = 192/309 (62%)

Query:     9 IQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAMSS-FTSV 67
             I   + FG    + L+ A    ++    E+ LTY+NF +E+IL+A+LP+   ++S F+ V
Sbjct:   130 ITSSDSFGSDEAEALK-AYSVPQEIQSYELKLTYENFKSEEILRAVLPEGQDVTSGFSRV 188

Query:    68 GHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVT 127
             GHI H NLRE  + ++ +IG+V++DK P    VVNK +TID+TYRNFQME+LAG+  MV 
Sbjct:   189 GHIAHMNLREHQLPYRKLIGQVIIDKNPGITCVVNKTNTIDSTYRNFQMEVLAGESNMVA 248

Query:   128 MHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIV 187
               +ENG  ++ DFS+VYWN RLSTEHER+   +   D V+DVFAGVGPF+IPAARRG  V
Sbjct:   249 KVRENGVLYEFDFSRVYWNPRLSTEHERIVSLLHRDDTVVDVFAGVGPFAIPAARRGCAV 308

Query:   188 AANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGG 247
              ANDLNP+S+ WLQ + +LN+  V   I+ +  D RDF++   R  L    +       G
Sbjct:   309 LANDLNPESFRWLQHNAKLNK--VDQKITTSNLDGRDFIRGPVRERLPALMK-------G 359

Query:   248 TAVARVIMNLPATAVEYVRYLK-VLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSYD 306
             +    V+MNLPA A+E++   K +L  E    LS  P ++ Y F  + D + +  ++  +
Sbjct:   360 SQKIHVVMNLPALALEFLDAFKGLLDPEPDQSLSNLPQVHCYGFSKENDPQ-RDVVERAE 418

Query:   307 PSYATLIRG 315
              S  T ++G
Sbjct:   419 ASLKTNLQG 427

GO:0016740 "transferase activity" evidence=IEA

GO:0052906 "tRNA (guanine(37)-N(1))-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

FB|FBgn0052281 CG32281 [Drosophila melanogaster (taxid:7227)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 123/273 (45%), Positives = 181/273 (66%)

Query:    23 LENAKLTAKDFTHAEVLLTYDNFSAEDILKAILP-DNVAMSSFTSVGHIVHCNLREELIE 81
             L+  K+ A++F+ A++ L Y+N+SA +ILK++LP +   ++S++ +GHI H NLR+ L+ 
Sbjct:   109 LQRQKVNAENFSFADLELRYENWSANEILKSVLPTEEEGLTSYSRIGHIAHLNLRDHLLP 168

Query:    82 HKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFS 141
             +K +IG+VL DK+P+C TVVNKA +IDNTYRNFQ+EL+ G        KENG  F+ DFS
Sbjct:   169 YKQLIGQVLRDKLPNCRTVVNKASSIDNTYRNFQLELICGDPDYQVETKENGVPFEFDFS 228

Query:   142 KVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQ 201
             KVYWN RLSTEHER+ K ++  D++ DVFAGVGPFSIPAA++   V ANDLNP+S+ WLQ
Sbjct:   229 KVYWNPRLSTEHERIVKMLKSDDVLYDVFAGVGPFSIPAAKKRCHVLANDLNPESFRWLQ 288

Query:   202 ASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA 261
              + + N+      I  + KD R F+  + R  L++   +   +T G     + MNLPA A
Sbjct:   289 HNAKRNK--CLPNIKMSNKDGRQFIVEELREDLLKRLCTTDTTTYGI---HITMNLPAMA 343

Query:   262 VEYVRYLKVL-TREEFGKLSRP---PVLYLYCF 290
             VE++   + L + +E  +L      P +++Y F
Sbjct:   344 VEFLDAFRGLYSADELAQLPTNVCYPTVHVYSF 376

GO:0006400 "tRNA modification" evidence=ISS

GO:0008175 "tRNA methyltransferase activity" evidence=ISS

GO:0006555 "methionine metabolic process" evidence=ISS

RGD|1306567 Trmt5 "tRNA methyltransferase 5 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 119/257 (46%), Positives = 167/257 (64%)

Query:    40 LTYDNFSAEDILKAILPDNVAMSS-FTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCE 98
             LTY+NF +E+IL+A+LP+   ++S F+ VGHI H NLR+  +  K +IG+V++DK P   
Sbjct:   166 LTYENFKSEEILRAVLPEGQDVTSGFSRVGHIAHLNLRDHQLPFKHLIGQVMVDKNPGIT 225

Query:    99 TVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTK 158
             + VNK   IDNTYRNFQME+L G++ M+T  +EN  T++ DFSKVYWN RLSTEH R+T+
Sbjct:   226 SAVNKTSNIDNTYRNFQMEVLCGEENMLTKVRENNYTYEFDFSKVYWNPRLSTEHGRITE 285

Query:   159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISAT 218
              +  GD++ DVFAGVGPF+IPAAR+   V ANDLNP+S+ WL  + +LN+  V   +   
Sbjct:   286 LLNPGDVLFDVFAGVGPFAIPAARKNCTVFANDLNPESHRWLLHNCKLNK--VDQKVKVF 343

Query:   219 QKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGK 278
               D +DFLQ   R  L+      G ST G     ++MNLPA A+E++   + L   +   
Sbjct:   344 NMDGKDFLQGPVREELML---RLGLSTEGKPSLHIVMNLPAKAIEFLSVFRSLLDGQPCS 400

Query:   279 LSRPPVLYLYCFLPKMD 295
               R P+++ YCF    D
Sbjct:   401 TERLPIVHCYCFSKDSD 417

GO:0009019 "tRNA (guanine-N1-)-methyltransferase activity" evidence=IEA

MGI|MGI:1923607 Trmt5 "TRM5 tRNA methyltransferase 5" [Mus musculus (taxid:10090)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 120/291 (41%), Positives = 179/291 (61%)

Query:     6 YKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAMSS-F 64
             Y+++   + F +  + VL+   ++ +  +   + LTY+NF +E+ILKA+LP+   ++S F
Sbjct:   136 YRMLTA-DSFDKAELGVLKELDVSPQ-LSQYNLELTYENFKSEEILKAVLPEGQDVTSGF 193

Query:    65 TSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDC 124
             + VGHI H NLR+  +  K +IG+V++DK P   + VNK   IDNTYRNFQME+L G++ 
Sbjct:   194 SRVGHIAHLNLRDHQLPFKHLIGQVMVDKNPGITSAVNKTSNIDNTYRNFQMEVLCGEEN 253

Query:   125 MVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRG 184
             M+T  +EN  T++ DFSKVYWN RLSTEH R+T+ +  GD++ DVFAGVGPF+IPAAR+ 
Sbjct:   254 MLTKVRENNYTYEFDFSKVYWNPRLSTEHGRITELLNPGDVLFDVFAGVGPFAIPAARKN 313

Query:   185 AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNS 244
               V ANDLNP+S+ WL  + +LN+  V   +     D +DF+Q   R  L+      G S
Sbjct:   314 CTVFANDLNPESHKWLLHNCKLNK--VDQKVKVFNMDGKDFIQGPVREELML---RLGLS 368

Query:   245 TGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMD 295
                     ++MNLPA A+E++   + L   +       P ++ YCF    D
Sbjct:   369 AEAKPSVHIVMNLPAKAIEFLSVFRSLLDGQPCSTELLPTVHCYCFSKDSD 419

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009019 "tRNA (guanine-N1-)-methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0030488 "tRNA methylation" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0052906 "tRNA (guanine(37)-N(1))-methyltransferase activity" evidence=IEA

UNIPROTKB|F1PN08 TRMT5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 119/286 (41%), Positives = 177/286 (61%)

Query:     6 YKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAMSS-F 64
             YK+I   + F    + +L+   +  +  +   + LTY+NF +E+ILKA+LP+   ++S F
Sbjct:   141 YKIITG-DSFERAELSILKQLNVNPQ-ISKYNLELTYENFKSEEILKAVLPEGQDVTSGF 198

Query:    65 TSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDC 124
             + VGHI H NLR+  +  K +IG+V++DK P   + VNK + IDNTYRNFQME+L+G++ 
Sbjct:   199 SRVGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKINNIDNTYRNFQMEVLSGEEN 258

Query:   125 MVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRG 184
             M+T  +EN  T++ DFSKVYWN RLSTEH R+T+ ++ GD++ DVFAGVGPF+IP A++ 
Sbjct:   259 MMTKVRENSYTYEFDFSKVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKN 318

Query:   185 AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNS 244
               V ANDLNP+S+ WL  + +LN+  V   +     D +DFLQ   R  L+   Q    S
Sbjct:   319 CTVFANDLNPESHKWLLHNCKLNK--VDQKVKVFNLDGKDFLQGPVRKELME--QLGPLS 374

Query:   245 TGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCF 290
                     ++MNLPA A+E++   K L           P+++ Y F
Sbjct:   375 KERKHSVHIVMNLPAKAIEFLNVFKSLLDGPSCNTELLPIVHCYSF 420

GO:0009019 "tRNA (guanine-N1-)-methyltransferase activity" evidence=IEA

UNIPROTKB|J9P199 TRMT5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 119/286 (41%), Positives = 177/286 (61%)

Query:     6 YKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAMSS-F 64
             YK+I   + F    + +L+   +  +  +   + LTY+NF +E+ILKA+LP+   ++S F
Sbjct:   141 YKIITG-DSFERAELSILKQLNVNPQ-ISKYNLELTYENFKSEEILKAVLPEGQDVTSGF 198

Query:    65 TSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDC 124
             + VGHI H NLR+  +  K +IG+V++DK P   + VNK + IDNTYRNFQME+L+G++ 
Sbjct:   199 SRVGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKINNIDNTYRNFQMEVLSGEEN 258

Query:   125 MVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRG 184
             M+T  +EN  T++ DFSKVYWN RLSTEH R+T+ ++ GD++ DVFAGVGPF+IP A++ 
Sbjct:   259 MMTKVRENSYTYEFDFSKVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKN 318

Query:   185 AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNS 244
               V ANDLNP+S+ WL  + +LN+  V   +     D +DFLQ   R  L+   Q    S
Sbjct:   319 CTVFANDLNPESHKWLLHNCKLNK--VDQKVKVFNLDGKDFLQGPVRKELME--QLGPLS 374

Query:   245 TGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCF 290
                     ++MNLPA A+E++   K L           P+++ Y F
Sbjct:   375 KERKHSVHIVMNLPAKAIEFLNVFKSLLDGPSCNTELLPIVHCYSF 420

GO:0009019 "tRNA (guanine-N1-)-methyltransferase activity" evidence=IEA

UNIPROTKB|J9P7M6 TRMT5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 119/286 (41%), Positives = 177/286 (61%)

Query:     6 YKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAMSS-F 64
             YK+I   + F    + +L+   +  +  +   + LTY+NF +E+ILKA+LP+   ++S F
Sbjct:   141 YKIITG-DSFERAELSILKQLNVNPQ-ISKYNLELTYENFKSEEILKAVLPEGQDVTSGF 198

Query:    65 TSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDC 124
             + VGHI H NLR+  +  K +IG+V++DK P   + VNK + IDNTYRNFQME+L+G++ 
Sbjct:   199 SRVGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKINNIDNTYRNFQMEVLSGEEN 258

Query:   125 MVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRG 184
             M+T  +EN  T++ DFSKVYWN RLSTEH R+T+ ++ GD++ DVFAGVGPF+IP A++ 
Sbjct:   259 MMTKVRENSYTYEFDFSKVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKN 318

Query:   185 AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNS 244
               V ANDLNP+S+ WL  + +LN+  V   +     D +DFLQ   R  L+   Q    S
Sbjct:   319 CTVFANDLNPESHKWLLHNCKLNK--VDQKVKVFNLDGKDFLQGPVRKELME--QLGPLS 374

Query:   245 TGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCF 290
                     ++MNLPA A+E++   K L           P+++ Y F
Sbjct:   375 KERKHSVHIVMNLPAKAIEFLNVFKSLLDGPSCNTELLPIVHCYSF 420

GO:0009019 "tRNA (guanine-N1-)-methyltransferase activity" evidence=IEA

UNIPROTKB|Q3MHN8 TRMT5 "tRNA (guanine(37)-N1)-methyltransferase" [Bos taurus (taxid:9913)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 118/286 (41%), Positives = 181/286 (63%)

Query:     6 YKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAMSS-F 64
             YK+    + F +  + +L+   +  +  +   + LTY+NF +E+IL+A+LP+   ++S F
Sbjct:   141 YKMFT-VDSFEKEELSILKQLNVNPQ-ISKYNLDLTYENFKSEEILRAVLPEGQDVTSGF 198

Query:    65 TSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDC 124
             + VGHI H NLR+  + +K +IG+V++DK P   + VNK + IDNTYRNF+ME+L+G++ 
Sbjct:   199 SRVGHIAHLNLRDHQLPYKHLIGQVMIDKNPGITSAVNKINNIDNTYRNFEMEVLSGEEN 258

Query:   125 MVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRG 184
             M+T  +EN  T++ DFSKVYWN RLSTEH R+T+ ++ GD++ DVFAGVGPF+IPAA++ 
Sbjct:   259 MMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPAAKKK 318

Query:   185 AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNS 244
               V ANDLNP+S+ WL  + +LN+  V   +     D RDFLQ   R  L++  Q    S
Sbjct:   319 CTVFANDLNPESHKWLLHNCKLNK--VDQKVKVFNLDGRDFLQGPVREELMQ--QLGPLS 374

Query:   245 TGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCF 290
                     ++MNLPA A+E++   K L   +       P+++ Y F
Sbjct:   375 KERKHSVHIVMNLPAKAIEFLSAFKALLEGQPCGSELLPIVHCYSF 420

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0052906 "tRNA (guanine(37)-N(1))-methyltransferase activity" evidence=IEA

UNIPROTKB|I3L8T3 TRMT5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 119/286 (41%), Positives = 181/286 (63%)

Query:     6 YKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAMSS-F 64
             YK+    + F +  + +L+   ++ +  +   + LTY+NF +E+IL+A+LP+   ++S F
Sbjct:   143 YKIFTS-DSFEKEELSILKQLNVSPQ-ISKYNLELTYENFKSEEILRAVLPEGQDVTSGF 200

Query:    65 TSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDC 124
             + VGHI H NLR+  + +K +IG+V +DK P   + VNK + IDNTYRNFQME+L+G++ 
Sbjct:   201 SRVGHIAHLNLRDHQLPYKHLIGQVTIDKNPGITSAVNKINNIDNTYRNFQMEVLSGEEN 260

Query:   125 MVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRG 184
             M+T  +EN  T++ DFSKVYWN RLSTEH R+T+ ++ GD++ DVFAGVGPF+IPAA++ 
Sbjct:   261 MMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPAAKKN 320

Query:   185 AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNS 244
               V ANDLNP+S+ WL  + +LN+  V   +     D +DFLQ   R  L++  Q    S
Sbjct:   321 CTVFANDLNPESHKWLLHNCKLNK--VDQKVKVFNLDGKDFLQGPVREELMQ--QLGLLS 376

Query:   245 TGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCF 290
                     ++MNLPA AVE++   K L   +       P+++ Y F
Sbjct:   377 KERKHSVHIVMNLPAKAVEFLCAFKSLLDGQPCSSELLPIVHCYSF 422

GO:0009019 "tRNA (guanine-N1-)-methyltransferase activity" evidence=IEA

UNIPROTKB|F1NFG8 TRMT5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 123/283 (43%), Positives = 181/283 (63%)

Query:    11 KFEDF--GEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAMSS-FTSV 67
             K  +F  GE   +VL+   ++  + +   + LTY+NF +E+IL+A+LP+   ++S F+ V
Sbjct:   143 KIPEFSLGESEKEVLKQLHISP-EVSKYNLELTYENFKSEEILRAVLPEGQDVTSGFSRV 201

Query:    68 GHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVT 127
             GHI H NLR+  + ++ +IG+V++DK P    VVNK   ID+TYRNFQME+LAG++ +VT
Sbjct:   202 GHIAHVNLRDHQLPYRHLIGQVIVDKNPGITCVVNKTSIIDSTYRNFQMEVLAGENNLVT 261

Query:   128 MHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIV 187
               KEN  T+++DF+KVYWN RLSTEH R+ + ++ GD++ DVFAG+GPF+IPAAR+  +V
Sbjct:   262 KVKENNFTYELDFAKVYWNPRLSTEHGRIVELLKPGDVLFDVFAGIGPFAIPAARKKCVV 321

Query:   188 AANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGG 247
              ANDLNP+SY WL  + +LN+  V   I A   D RDFL    R  L R   +       
Sbjct:   322 FANDLNPESYHWLLHNCKLNK--VDNKIKAFNMDGRDFLLGPVREEL-RKELTLAKEQK- 377

Query:   248 TAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCF 290
             TA   ++MNLPA A+E++   + L   E    +  P ++ Y F
Sbjct:   378 TAF-HIVMNLPALAIEFLDVFRHLLVGEPCSTAVLPTVHCYGF 419

GO:0009019 "tRNA (guanine-N1-)-methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B8A5G9	TRM5_DANRE	2, ., 1, ., 1, ., 2, 2, 8	0.4304	0.9135	0.6166	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!
3rd Layer	2.1.1.31	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	324
pfam02475	199	pfam02475, Met_10, Met-10+ like-protein	6e-65
COG2520	341	COG2520, COG2520, Predicted methyltransferase [Gen	1e-60
COG2265	432	COG2265, TrmA, SAM-dependent methyltransferases re	1e-04
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	4e-04
PRK07580	230	PRK07580, PRK07580, Mg-protoporphyrin IX methyl tr	4e-04
COG2227	243	COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m	6e-04
COG1092	393	COG1092, COG1092, Predicted SAM-dependent methyltr	0.001
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	0.001
TIGR00479	431	TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransf	0.002
COG4076	252	COG4076, COG4076, Predicted RNA methylase [General	0.003

>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein

 Score =  202 bits (517), Expect = 6e-65
 Identities = 81/206 (39%), Positives = 122/206 (59%), Gaps = 24/206 (11%)

Query: 62  SSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAG 121
           SSF  +G IV  N+ EEL+ +K +IG  +L K    + V+ K   +   +R  ++E++AG
Sbjct: 1   SSFDIIGDIVILNIPEELMPYKKVIGEAILKKTK-VKAVLRKVGIVTGEFRTRRLEVIAG 59

Query: 122 KDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAA 181
           +D   T+HKENGC FK+D SKVY++ RL  E ER+ K V+EG++V+D+FAG+GPFSIP A
Sbjct: 60  EDRTETIHKENGCRFKIDVSKVYFSPRLIGERERIAKLVKEGEVVVDMFAGIGPFSIPIA 119

Query: 182 R--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239
           +  +   V A +LNP++  +L+ +I+LN  +V+  IS    D RD +             
Sbjct: 120 KHSKAKRVYAVELNPEAVKYLKENIKLN--KVEGVISPILGDVRDVILEG---------- 167

Query: 240 SEGNSTGGTAVARVIMNLPATAVEYV 265
                       RVIMNLP +A E++
Sbjct: 168 ---------VADRVIMNLPKSAHEFL 184

The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation. Length = 199

>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function prediction only]

 Score =  196 bits (501), Expect = 1e-60
 Identities = 93/328 (28%), Positives = 151/328 (46%), Gaps = 58/328 (17%)

Query: 19  NVKVLENAKLTAKDFTHAEVLLTYD-------------------NFSAEDILKAILPDNV 59
              +L+      +D  +  + +  +                   N + ++IL   LP+ V
Sbjct: 22  AAGLLDKDYKIDRDGDYLLIPVKDEANAILEVVVLEEEPVRRRSNENLKEILSDRLPEEV 81

Query: 60  A----MSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQ 115
                 SSF  +G I   ++ +EL  +K  I   +L      + V+ K   +   +R  +
Sbjct: 82  LRELVPSSFDIIGDIAILSIPDELEPYKREIAEAILRVHGKVKAVLLKEGPVAGEFRVPR 141

Query: 116 MELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGP 175
           +E+LAG+    T+H+ENGC FK+D +KVY++ RLSTE  RV + V+EG+ VLD+FAGVGP
Sbjct: 142 LEVLAGERRTETIHRENGCRFKVDVAKVYFSPRLSTERARVAELVKEGETVLDMFAGVGP 201

Query: 176 FSIPAARRGAI-VAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL 234
           FSIP A++G   V A D+NPD+  +L+ +IRLN  +V+  +     DAR+       A  
Sbjct: 202 FSIPIAKKGRPKVYAIDINPDAVEYLKENIRLN--KVEGRVEPILGDAREVAPELGVA-- 257

Query: 235 VRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTRE-------EFGKLSRPPVLYL 287
                            R+IM LP +A E++     L ++       EF           
Sbjct: 258 ----------------DRIIMGLPKSAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPE 301

Query: 288 Y-------CFLPKMDLETKKKIKSYDPS 308
                       K+++   +++KSY P 
Sbjct: 302 KRIKSAARKGGYKVEVLKVRRVKSYSPG 329

Length = 341

>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 46/167 (27%)

Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISAT 218
           E+  G+ VLD++ GVG F +P A+R   V   +++P++    Q +   N           
Sbjct: 290 ELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAAN----------- 338

Query: 219 QKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT--AVEYVRYLKVLTREEF 276
             D  +F+  DA      W +             V+++ P      E ++ L        
Sbjct: 339 GIDNVEFIAGDAEEFTPAWWEGYKPDV-------VVVDPPRAGADREVLKQLA------- 384

Query: 277 GKLSRPPVLYLYCFLPKMDLETKKKIKSYDPSYATLIRGIRRLSSDG 323
            KL    ++Y+                S +P  ATL R +  L+S G
Sbjct: 385 -KLKPKRIVYV----------------SCNP--ATLARDLAILASTG 412

Length = 432

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 163 GDLVLDVFAGVGPFSIPAARRGAI--VAANDLNPDSYAWLQASIRLNERQVKTPISATQK 220
           GD VLD  AG G F + AAR G    V   +L+P++ A   A  RL    +   +     
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAAL--ARRRLALAGLAPRVRVVVG 58

Query: 221 DARDFLQ-TDARAHLV 235
           DAR+ L+  D    LV
Sbjct: 59  DARELLELPDGSFDLV 74

This family contains methyltransferase domains. Length = 117

>gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query: 166 VLDVFAGVGPFSIPAARRGAIVAANDLNP 194
           +LD   GVG  SIP ARRGA V A+D++P
Sbjct: 67  ILDAGCGVGSLSIPLARRGAKVVASDISP 95

Length = 230

>gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDS--YAWLQASI 204
             G  VLDV  G G  S P AR GA V   D +      A L A  
Sbjct: 58  LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALE 103

Length = 243

>gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 162 EGDLVLDVFAGVGPFSIPAARRGAI-VAANDLNPDSYAWLQASIRLNERQVKTPISATQK 220
            G  VL++F+  G FS+ AA  GA  V + DL+  +  W + +  LN             
Sbjct: 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGD-RHRFIVG 275

Query: 221 DARDFLQTDAR 231
           D   +L+   R
Sbjct: 276 DVFKWLRKAER 286

Length = 393

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 162 EGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQ 219
            G  VLD+  G G  +I  AR   GA V   DL+P+     + +    +  +   I+  Q
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENA---KLALGPRITFVQ 57

Query: 220 KDARDFLQTDARAHLV 235
            DA D L        V
Sbjct: 58  GDAPDALDLLEGFDAV 73

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 12/86 (13%)

Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISAT 218
           E++  +LV+D + GVG F++P A++   V   ++ P+S    Q +  LN           
Sbjct: 289 ELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELN----------- 337

Query: 219 QKDARDFLQTDARAHLVRWSQSEGNS 244
                +FL       L +     G  
Sbjct: 338 GIANVEFLAGTLETVLPKQPW-AGQI 362

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [Protein synthesis, tRNA and rRNA base modification]. Length = 431

>gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function prediction only]

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 8/94 (8%)

Query: 137 KMDFSKVYWNSRLSTEHERVTK-----EVREGDLVLDVFAGVGPFSIPAARRGAIVAAND 191
           +       ++  L  + ER+            D   D+ AG G  S+ AA     V A +
Sbjct: 2   EFRLLVDSYHLDLLRDVERLAVFTSAIAEVAEDTFADLGAGSGILSVVAAHAAERVIAIE 61

Query: 192 LNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225
            +P      + ++ +              DARD+
Sbjct: 62  KDPKRARLAEENLHVPG---DVNWEVVVGDARDY 92

Length = 252

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	324
KOG2078|consensus	495		100.0
COG2520	341	Predicted methyltransferase [General function pred	100.0
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	100.0
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	100.0
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.97
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.96
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.94
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.88
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.87
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.86
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.86
KOG1227|consensus	351		99.85
KOG2187|consensus	534		99.79
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.76
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.73
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.69
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.66
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.61
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.6
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.59
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.58
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.57
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.57
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.56
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.53
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.51
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.5
COG4123	248	Predicted O-methyltransferase [General function pr	99.49
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.48
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.47
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.46
COG2890	280	HemK Methylase of polypeptide chain release factor	99.44
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.44
PRK14967	223	putative methyltransferase; Provisional	99.41
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.41
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.4
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.4
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.4
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.39
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.37
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.36
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.35
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.35
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.35
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.34
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.33
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.33
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.33
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.32
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.31
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.31
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.31
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.31
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.31
PRK07402	196	precorrin-6B methylase; Provisional	99.29
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.29
PRK14968	188	putative methyltransferase; Provisional	99.28
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.27
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.25
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.25
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.25
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.24
PRK11207	197	tellurite resistance protein TehB; Provisional	99.24
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.24
PRK12335	287	tellurite resistance protein TehB; Provisional	99.24
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.23
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.23
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.22
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.21
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.21
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.21
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.2
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.2
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.2
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.2
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.2
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.18
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.18
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.17
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.17
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.17
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.16
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.14
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.14
COG2521	287	Predicted archaeal methyltransferase [General func	99.13
PLN02244	340	tocopherol O-methyltransferase	99.13
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.12
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.12
PLN02672	1082	methionine S-methyltransferase	99.11
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.11
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.1
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.1
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	99.1
KOG1540|consensus	296		99.09
PHA03412	241	putative methyltransferase; Provisional	99.08
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.07
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.06
KOG2904|consensus	328		99.06
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.06
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.05
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.05
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	99.05
PLN02476	278	O-methyltransferase	99.05
KOG3420|consensus	185		99.04
PRK04266	226	fibrillarin; Provisional	99.04
PHA03411	279	putative methyltransferase; Provisional	99.04
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.03
PRK04457	262	spermidine synthase; Provisional	99.03
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.02
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.02
KOG1270|consensus	282		99.02
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.0
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.0
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.98
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.97
KOG2730|consensus	263		98.96
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.96
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.96
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.94
PRK00811	283	spermidine synthase; Provisional	98.93
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.93
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.92
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.9
PRK10742	250	putative methyltransferase; Provisional	98.89
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.88
PTZ00146	293	fibrillarin; Provisional	98.87
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.85
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.85
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.84
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.84
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.83
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.83
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.81
PRK03612	521	spermidine synthase; Provisional	98.8
PRK06922	677	hypothetical protein; Provisional	98.8
PLN02336	475	phosphoethanolamine N-methyltransferase	98.78
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.78
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.78
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.78
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.77
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.77
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.76
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.76
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.75
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.75
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.75
PRK01581	374	speE spermidine synthase; Validated	98.75
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.75
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.74
TIGR03438	301	probable methyltransferase. This model represents	98.74
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.72
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.72
KOG3191|consensus	209		98.71
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.7
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.69
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.69
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.69
PLN02366	308	spermidine synthase	98.68
PRK05785	226	hypothetical protein; Provisional	98.68
KOG0820|consensus	315		98.67
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.67
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.64
TIGR00438	188	rrmJ cell division protein FtsJ.	98.64
PLN02336	475	phosphoethanolamine N-methyltransferase	98.64
PLN03075	296	nicotianamine synthase; Provisional	98.63
COG4122	219	Predicted O-methyltransferase [General function pr	98.61
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.6
KOG1499|consensus	346		98.6
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.59
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.59
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.58
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.57
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.56
PRK08317	241	hypothetical protein; Provisional	98.55
COG4076	252	Predicted RNA methylase [General function predicti	98.55
PLN02490	340	MPBQ/MSBQ methyltransferase	98.54
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.53
PRK06202	232	hypothetical protein; Provisional	98.52
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.51
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.5
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.5
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.45
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.44
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.43
PRK04148	134	hypothetical protein; Provisional	98.41
KOG1500|consensus	517		98.4
PLN02823	336	spermine synthase	98.36
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.34
KOG1271|consensus	227		98.34
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.34
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.33
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.31
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.27
KOG1122|consensus	460		98.21
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.2
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.16
KOG2671|consensus	421		98.14
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.12
KOG2915|consensus	314		98.11
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.08
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.08
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.07
KOG1253|consensus	525		98.05
KOG4300|consensus	252		98.05
COG3897	218	Predicted methyltransferase [General function pred	97.93
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.88
PHA01634	156	hypothetical protein	97.85
KOG1541|consensus	270		97.83
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.82
KOG1663|consensus	237		97.82
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.79
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.77
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.77
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.75
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.73
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.73
PRK11524	284	putative methyltransferase; Provisional	97.7
KOG3010|consensus	261		97.69
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	97.69
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.57
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.53
PRK13699	227	putative methylase; Provisional	97.53
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.52
KOG1661|consensus	237		97.48
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.46
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.44
COG0286	489	HsdM Type I restriction-modification system methyl	97.43
PF13679	141	Methyltransf_32: Methyltransferase domain	97.43
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.43
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.42
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	97.4
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.36
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.32
KOG2361|consensus	264		97.31
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.28
KOG2198|consensus	375		97.27
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.26
KOG2899|consensus	288		97.23
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.22
KOG1501|consensus	636		97.1
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	97.08
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.03
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.0
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.99
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.99
PRK00536	262	speE spermidine synthase; Provisional	96.9
KOG1975|consensus	389		96.86
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	96.79
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.75
PRK10458	467	DNA cytosine methylase; Provisional	96.75
PLN02232	160	ubiquinone biosynthesis methyltransferase	96.67
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	96.61
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	96.58
KOG4058|consensus	199		96.44
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.42
COG1568	354	Predicted methyltransferases [General function pre	96.41
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	96.33
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	96.32
KOG4589|consensus	232		95.8
TIGR00497	501	hsdM type I restriction system adenine methylase (	95.56
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	95.49
COG3129	292	Predicted SAM-dependent methyltransferase [General	95.48
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	95.37
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	95.14
COG0863	302	DNA modification methylase [DNA replication, recom	95.08
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	94.84
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.76
COG1743	875	Adenine-specific DNA methylase containing a Zn-rib	94.45
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	93.84
KOG1596|consensus	317		93.79
KOG1269|consensus	364		93.41
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	93.26
KOG1709|consensus	271		93.06
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	92.92
KOG2352|consensus	482		92.91
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	92.65
KOG2940|consensus	325		92.02
KOG2912|consensus	419		92.01
KOG2078|consensus	495		91.99
KOG2651|consensus	476		91.85
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	91.47
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	91.33
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	91.18
COG2961	279	ComJ Protein involved in catabolism of external DN	91.07
KOG1201|consensus	300		91.07
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	90.72
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	90.67
PRK11524	284	putative methyltransferase; Provisional	90.41
COG3392	330	Adenine-specific DNA methylase [DNA replication, r	90.25
KOG2920|consensus	282		89.85
KOG1099|consensus	294		89.57
KOG0024|consensus	354		89.44
KOG3924|consensus	419		89.38
KOG2793|consensus	248		89.32
KOG3115|consensus	249		88.99
KOG0822|consensus	649		88.81
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	88.64
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	88.61
KOG3201|consensus	201		87.5
KOG2360|consensus	413		86.46
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	85.23
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	83.8
KOG0919|consensus	338		83.69
PRK13699	227	putative methylase; Provisional	83.6
KOG3987|consensus	288		82.98
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	82.76
KOG1098|consensus	780		82.68
PRK06172	253	short chain dehydrogenase; Provisional	82.4
PRK06124	256	gluconate 5-dehydrogenase; Provisional	82.12
PRK06194	287	hypothetical protein; Provisional	82.06
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	81.95
PRK06949	258	short chain dehydrogenase; Provisional	81.88
KOG3045|consensus	325		81.86
PRK07063	260	short chain dehydrogenase; Provisional	81.82
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	81.75
PRK05867	253	short chain dehydrogenase; Provisional	81.5
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	80.55
PRK07890	258	short chain dehydrogenase; Provisional	80.51
PRK07102	243	short chain dehydrogenase; Provisional	80.44
PRK08862	227	short chain dehydrogenase; Provisional	80.26
PRK05854	313	short chain dehydrogenase; Provisional	80.14
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	80.06

>KOG2078|consensus

Probab=100.00  E-value=2.3e-47  Score=357.17  Aligned_cols=316  Identities=40%  Similarity=0.626  Sum_probs=259.4

Q ss_pred             ccccccccccCCCChhHHHHHHhcccccCCceeEEEEeeccCCChHHHHHhccCCC-CCCceeEEECCEEEEEeCchhhh
Q psy16898          3 LHFYKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDN-VAMSSFTSVGHIVHCNLREELIE   81 (324)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~p~~-~~~~~~d~~G~i~vi~~~~~~~~   81 (324)
                      ||+++.-.+.+ +|++.+-.+...+....+++.+++.|+|++|+.++++|+++|++ +.+++|.+.|||+|+|+..+..+
T Consensus        90 ls~~rv~~dds-f~~~~ll~~e~lN~~~~~~i~~~~~L~yE~w~~keilRavlpe~e~~~s~ft~~GhIaHLNl~~e~lp  168 (495)
T KOG2078|consen   90 LSPSRVPADDS-FPEEELLVLELLNWPELEIIPHELELTYEYWKAKEILRAVLPEEEDVPSSFTITGHIAHLNLRDEQLP  168 (495)
T ss_pred             eeccccccccc-chHHHHHHhhhcCcccceeeccccccchhhhhHHHHHHhhCcccccccccceeeeeeEEeeccchhcc
Confidence            68844444444 99988777777666566799999999999999999999999999 89999999999999999999999


Q ss_pred             hHHHHHHHHHhhCCCceEEEEcCCCCCcccccceeeEEccCCCeEEEEEeCCeEEEEeccceeecCcChHHHHHHHhhcc
Q psy16898         82 HKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVR  161 (324)
Q Consensus        82 ~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~~~~~~~~l~G~~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~~~~~~~  161 (324)
                      ++..|++++.++++.+++++.|.+.+.+.+|.+++++|+|+++..+.++|+|++|++|++++|||+|++.|+.++...++
T Consensus       169 fk~iI~~Vi~DK~n~~ktvv~K~~~Itn~yR~~~~eviAGe~n~vtevre~~~~Fk~DfskVYWnsRL~~Eherlsg~fk  248 (495)
T KOG2078|consen  169 FKRIIGQVIYDKNNLIKTVVNKIGRITNRYRNFKLEVIAGERNLVTEVREGGERFKFDFSKVYWNSRLSHEHERLSGLFK  248 (495)
T ss_pred             HHHHHHHHhhccCCCceEeeecccchhhhhcccCceEecCCCceEEEEecCCeeEEEecceEEeeccchhHHHHHhhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCC-eEEEeccHHHHHHHH-------HHHh
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTP-ISATQKDARDFLQTD-------ARAH  233 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~-v~~~~~D~~~~~~~~-------~~~~  233 (324)
                      +|+.|.|+|||+|+|++++++++|+|+|+|+||+++++++.|++.|.  +... ++++++|+.+|+++.       ..+.
T Consensus       249 ~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNk--v~~~~iei~Nmda~~Flr~e~~~~~~~I~~~  326 (495)
T KOG2078|consen  249 PGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNK--VDPSAIEIFNMDAKDFLRQEPLPYKRLIADE  326 (495)
T ss_pred             CcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccc--cchhheeeecccHHHHhhcCCchhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999  8754 999999999998521       1111


Q ss_pred             hhhh----cccCCC---------CCCCCcccEEEECChhhhHHHHHHHhc-cch-hhcCCCCCCCEEEEEEccc---CCC
Q psy16898        234 LVRW----SQSEGN---------STGGTAVARVIMNLPATAVEYVRYLKV-LTR-EEFGKLSRPPVLYLYCFLP---KMD  295 (324)
Q Consensus       234 ~~~~----~~~~~~---------~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~-~~~~~~~~~g~vh~y~f~~---~~~  295 (324)
                      ..++    .....+         .+...+.+|++||+|+.+++|+.+|++ +.. +.+ .....+++|||||++   ...
T Consensus       327 v~~kl~k~~~t~~~~~d~~p~~~~~~~~~i~hvvmnLPa~avefL~~F~~~la~k~~~-d~~~lplvhcy~F~k~~~~~~  405 (495)
T KOG2078|consen  327 VLDKLMKKIGTVVNKIDRIPQPFRTMQLHIVHVVMNLPASAVEFLLRFSGDLARKGPI-DKTPLPLVHCYCFSKLFCDVS  405 (495)
T ss_pred             HhhhhhhhhcccccccccCCCcccccchhhhhhhccChHHHHHHHHHhHHHHhccCcc-ccccceeEEEEEEeecccCCC
Confidence            1110    000100         122345789999999999999999998 654 321 112457899999999   222


Q ss_pred             hhHH----hHhhh----cCCCceEEEEeecccCCC
Q psy16898        296 LETK----KKIKS----YDPSYATLIRGIRRLSSD  322 (324)
Q Consensus       296 ~~~~----~~v~~----y~~~~~~~i~~~~~~~~d  322 (324)
                      ..+.    ..+.+    ...+.-...+-||.++|.
T Consensus       406 s~e~~V~ar~~~~~kv~~e~~~~~~~h~VR~Vapn  440 (495)
T KOG2078|consen  406 STEDLVTARIVAALKVFAEDGALVSLHLVRKVAPN  440 (495)
T ss_pred             chHHHHHHHHHhhcceeeccccceeeeeeeccCCC
Confidence            2222    11211    233334577888888874

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=100.00  E-value=3.9e-43  Score=328.88  Aligned_cols=243  Identities=37%  Similarity=0.614  Sum_probs=216.0

Q ss_pred             hHHHHHhccCCC--C--CCceeEEECCEEEEEeCchhhhhHHHHHHHHHhhCCCceEEEEcCCCCCcccccceeeEEccC
Q psy16898         47 AEDILKAILPDN--V--AMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGK  122 (324)
Q Consensus        47 ~~~~l~~~~p~~--~--~~~~~d~~G~i~vi~~~~~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~~~~~~~~l~G~  122 (324)
                      .+++++..++++  .  +|++|+++|||++++++++..+++..|++++++.++.+++|+.+...+.|++|.+.+++|+|+
T Consensus        69 l~~~~~~~~~~~~~~~~~p~~~~iiGdIai~~~~~e~~~~~~~i~~ai~~~~~~vk~V~~k~~~v~G~~R~~~le~laGe  148 (341)
T COG2520          69 LKEILSDRLPEEVLRELVPSSFDIIGDIAILSIPDELEPYKREIAEAILRVHGKVKAVLLKEGPVAGEFRVPRLEVLAGE  148 (341)
T ss_pred             HHHHhhccchhhhhhhcCCcceEEEccEEEEeCCcccchHHHHHHHHHHhhccCeeEEEEecCccCCeEeccceEEeecC
Confidence            456666666665  3  799999999999999988877789999999999999999999999888999999999999999


Q ss_pred             CCeEEEEEeCCeEEEEeccceeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHH
Q psy16898        123 DCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQ  201 (324)
Q Consensus       123 ~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~  201 (324)
                      ..+.|+++|||+.|++|++++|||+++++||.|+++...+|++|+|+|||+|+||+++|+.|+ +|+|+|+||.|+++++
T Consensus       149 ~~teTihrE~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~  228 (341)
T COG2520         149 RRTETIHRENGCRFKVDVAKVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLK  228 (341)
T ss_pred             CCceEEEecCCEEEEEchHHeEECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHH
Confidence            888999999999999999999999999999999999999999999999999999999999998 5999999999999999


Q ss_pred             HHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCC
Q psy16898        202 ASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLS  280 (324)
Q Consensus       202 ~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~  280 (324)
                      +|+++|+  +.+.+..++||++++..+.                  ..+|+|+||+|.++.+|++.+.. +++       
T Consensus       229 eNi~LN~--v~~~v~~i~gD~rev~~~~------------------~~aDrIim~~p~~a~~fl~~A~~~~k~-------  281 (341)
T COG2520         229 ENIRLNK--VEGRVEPILGDAREVAPEL------------------GVADRIIMGLPKSAHEFLPLALELLKD-------  281 (341)
T ss_pred             HHHHhcC--ccceeeEEeccHHHhhhcc------------------ccCCEEEeCCCCcchhhHHHHHHHhhc-------
Confidence            9999999  9877999999999998764                  23999999999999999999987 555       


Q ss_pred             CCCEEEEEEcccCCChhH---------------------HhHhhhcCCCceEEEEeec
Q psy16898        281 RPPVLYLYCFLPKMDLET---------------------KKKIKSYDPSYATLIRGIR  317 (324)
Q Consensus       281 ~~g~vh~y~f~~~~~~~~---------------------~~~v~~y~~~~~~~i~~~~  317 (324)
                       +|++|+|.|++.++...                     ...|++|+|+..+.+++++
T Consensus       282 -~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~VksysP~v~hv~vd~~  338 (341)
T COG2520         282 -GGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRRVKSYSPGVYHVVVDLR  338 (341)
T ss_pred             -CcEEEEEeccchhhcccchHHHHHHHHhhccCcceEEEEEEecccCCCeeEEEEEEE
Confidence             49999999999866311                     1114677788887777765

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=100.00  E-value=8.1e-42  Score=300.36  Aligned_cols=192  Identities=44%  Similarity=0.709  Sum_probs=156.8

Q ss_pred             ceeEEECCEEEEEeCchhhhhHHHHHHHHHhhCCCceEEEEcCCCCCcccccceeeEEccCCCeEEEEEeCCeEEEEecc
Q psy16898         62 SSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFS  141 (324)
Q Consensus        62 ~~~d~~G~i~vi~~~~~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~~~~~~~~l~G~~~~~~~~~e~g~~f~id~~  141 (324)
                      +|||++|||++++++++..++++.|+++|+++.|++++|+.+.+.+.+.+|.+++++|+|+++++|+++|+|++|.+|++
T Consensus         1 t~~~~iG~Iaiv~~~~~~~~~~~~I~~~i~~~~~~vktV~~k~~~v~g~~R~~~~~~LaG~~~~~t~~~E~G~~f~~D~~   80 (200)
T PF02475_consen    1 TSFEIIGDIAIVNLPEELEPYKELIAEAILEKNPNVKTVYNKIGIVEGEFRTPDLEVLAGEPRTETIHKENGIRFKVDLS   80 (200)
T ss_dssp             -EEEEETTEEEEEB-CCCCHHHHHHHHHHHHHC-T-SEEEEE-S-SBTTTTB--EEEEEES--SEEEEEETTEEEEEETT
T ss_pred             CceEEEccEEEEeCCcccchHHHHHHHHHHHhccCceEEEEecCcCCCCcccccEEEEeCCCceEEEEEeCCEEEEEccc
Confidence            58999999999999988889999999999999999999999998889999999999999998889999999999999999


Q ss_pred             ceeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEe
Q psy16898        142 KVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQ  219 (324)
Q Consensus       142 ~~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~  219 (324)
                      ++||++++++||.|+.+.+++|++|+|+|||+|+|++++|+  +++.|+|+|+||.|++++++|+++|+  +.+++.+++
T Consensus        81 kvyfs~rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk--v~~~i~~~~  158 (200)
T PF02475_consen   81 KVYFSPRLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK--VENRIEVIN  158 (200)
T ss_dssp             TS---GGGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT---TTTEEEEE
T ss_pred             eEEEccccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC--CCCeEEEEc
Confidence            99999999999999999999999999999999999999999  67799999999999999999999999  998899999


Q ss_pred             ccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchh
Q psy16898        220 KDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       220 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~  274 (324)
                      +|+++++..                   ..||+|+||+|..+.+||+++.. ++++
T Consensus       159 ~D~~~~~~~-------------------~~~drvim~lp~~~~~fl~~~~~~~~~~  195 (200)
T PF02475_consen  159 GDAREFLPE-------------------GKFDRVIMNLPESSLEFLDAALSLLKEG  195 (200)
T ss_dssp             S-GGG---T-------------------T-EEEEEE--TSSGGGGHHHHHHHEEEE
T ss_pred             CCHHHhcCc-------------------cccCEEEECChHHHHHHHHHHHHHhcCC
Confidence            999998872                   34999999999999999999988 5543

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=100.00  E-value=5.5e-31  Score=254.54  Aligned_cols=254  Identities=15%  Similarity=0.170  Sum_probs=195.3

Q ss_pred             HHhccCCC-CCC-ceeEEECCEEEEEeCc-hhhhhHHHHHHHHHhhCCCceEEEEcCCCCCcccccc--eeeEEccCC-C
Q psy16898         51 LKAILPDN-VAM-SSFTSVGHIVHCNLRE-ELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNF--QMELLAGKD-C  124 (324)
Q Consensus        51 l~~~~p~~-~~~-~~~d~~G~i~vi~~~~-~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~~~~--~~~~l~G~~-~  124 (324)
                      .|-+-.+. .+| --+|+||+++++|+.+ .+..+++.|.++|.+.++ .++|+.+.+......++.  ...+++|+. +
T Consensus       102 yRlv~~e~DglpGliVD~y~d~~vvq~~~~~~~~~~~~i~~aL~~~~~-~~~i~~r~~~~~r~~egl~~~~~~~~G~~~~  180 (396)
T PRK15128        102 YRLIAGESDGLPGITIDRFGNFLVLQLLSAGAEYQRAALISALQTLYP-ECAIYDRSDVAVRKKEGMELTQGPVTGELPP  180 (396)
T ss_pred             EEEEeccCCCCCcEEEEEECCEEEEEECcHHHHHhHHHHHHHHHHHcC-CcEEEEcCcchhHHhcCCCccceEEecCCCC
Confidence            34444333 466 4789999999999865 577789999999998876 678998765433333332  356788984 4


Q ss_pred             eEEEEEeCCeEEEEeccc-----eeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHH
Q psy16898        125 MVTMHKENGCTFKMDFSK-----VYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYA  198 (324)
Q Consensus       125 ~~~~~~e~g~~f~id~~~-----~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~  198 (324)
                      ..+.+.|||++|.+|+..     +|+++|   +.+..+..+.+|++|||+|||+|.|++.++..|+ +|+++|+|+.+++
T Consensus       181 ~~~~v~E~g~~f~vdl~~g~ktG~flDqr---~~R~~~~~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~  257 (396)
T PRK15128        181 ALLPIEEHGMKLLVDIQGGHKTGYYLDQR---DSRLATRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALD  257 (396)
T ss_pred             ccEEEEECCEEEEEecccccccCcChhhH---HHHHHHHHhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHH
Confidence            456788999999999875     899998   7777777778899999999999999999888777 9999999999999


Q ss_pred             HHHHHHHHhCCCCC-CCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHH---HHHHHhccch-
Q psy16898        199 WLQASIRLNERQVK-TPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVE---YVRYLKVLTR-  273 (324)
Q Consensus       199 ~a~~N~~~n~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~---~l~~~~~l~~-  273 (324)
                      .|++|++.|+  +. ++++++++|+++++......              +..||.||+|||+.+..   ...+.++|.. 
T Consensus       258 ~a~~N~~~Ng--l~~~~v~~i~~D~~~~l~~~~~~--------------~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l  321 (396)
T PRK15128        258 IARQNVELNK--LDLSKAEFVRDDVFKLLRTYRDR--------------GEKFDVIVMDPPKFVENKSQLMGACRGYKDI  321 (396)
T ss_pred             HHHHHHHHcC--CCCCcEEEEEccHHHHHHHHHhc--------------CCCCCEEEECCCCCCCChHHHHHHHHHHHHH
Confidence            9999999999  85 47999999999988664321              24599999999986431   2222222222 


Q ss_pred             --hhcCCCCCCCEEEEEEcccC-CChhHHhHhh--hcCCCceEEEEeecccCCCCC
Q psy16898        274 --EEFGKLSRPPVLYLYCFLPK-MDLETKKKIK--SYDPSYATLIRGIRRLSSDGP  324 (324)
Q Consensus       274 --~~~~~~~~~g~vh~y~f~~~-~~~~~~~~v~--~y~~~~~~~i~~~~~~~~d~~  324 (324)
                        ...+.++++|++.+++|+.. +.+.+.+.+.  ....++..++++.+.|+||||
T Consensus       322 ~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~~~~~~~DhP  377 (396)
T PRK15128        322 NMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHP  377 (396)
T ss_pred             HHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEEcCCCCCCC
Confidence              22345678898887666654 5566777774  577899999999999999999

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.97  E-value=1.7e-30  Score=248.41  Aligned_cols=255  Identities=19%  Similarity=0.193  Sum_probs=200.1

Q ss_pred             HHhccCCC-CCC-ceeEEECCEEEEEeCc-hhhhhHHHHHHHHHhhCCCceEEEEcCCCCC-ccccc-ceeeEEccC-CC
Q psy16898         51 LKAILPDN-VAM-SSFTSVGHIVHCNLRE-ELIEHKFIIGRVLLDKVPSCETVVNKAHTID-NTYRN-FQMELLAGK-DC  124 (324)
Q Consensus        51 l~~~~p~~-~~~-~~~d~~G~i~vi~~~~-~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~-~~~~~-~~~~~l~G~-~~  124 (324)
                      .|.+.-+. .+| --.|+||+++|+|+.+ .++..++.|.+++.+..+.+++|+.+.+... +..+. .....+.|+ .+
T Consensus        98 ~Rl~~~e~dgl~Gl~vD~ygd~~vvq~~s~~~~~~~~~i~~~l~~~~~~~~~v~e~s~~~~r~~~~~~~~~~~~~g~~~~  177 (393)
T COG1092          98 YRLVNAEGDGLPGLTVDRYGDYLVVQLYSAGIEIFKEAILEALAEAFPAPKGVYEKSDVRLRRREGLKGRSQYLKGEEAP  177 (393)
T ss_pred             EEEEeccCCCCCCeEEEecCCEEEEEecccccccchHHHHHHHHHhhcccceeEeccchhhhhhhcccccccccccccCC
Confidence            44444444 455 5689999999999855 6777889999999999988999998864321 11111 133456673 45


Q ss_pred             eEEEEEeCCeEEEEeccc-----eeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHH
Q psy16898        125 MVTMHKENGCTFKMDFSK-----VYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYA  198 (324)
Q Consensus       125 ~~~~~~e~g~~f~id~~~-----~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~  198 (324)
                      ..+.+.|+|++|.+++..     ||.++|   +.++.+.....|++|||+||+||+||++||..|| +|++||+|..+++
T Consensus       178 ~~~~i~E~g~kf~v~~~~g~kTGfFlDqR---~~R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~  254 (393)
T COG1092         178 EEVVIEENGVKFLVDLVDGLKTGFFLDQR---DNRRALGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALE  254 (393)
T ss_pred             CcEEEEeCCeEEEEecCCcccceeeHHhH---HHHHHHhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHH
Confidence            567788999999999874     899999   7777776655699999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHhCCCCC-CCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH---HHHHHHhccchh
Q psy16898        199 WLQASIRLNERQVK-TPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV---EYVRYLKVLTRE  274 (324)
Q Consensus       199 ~a~~N~~~n~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~---~~l~~~~~l~~~  274 (324)
                      +|++|+++|+  ++ .++.++++|+++++......              +.+||+||+|||.++.   ...++.+.|.+.
T Consensus       255 ~a~~N~~LNg--~~~~~~~~i~~Dvf~~l~~~~~~--------------g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l  318 (393)
T COG1092         255 WARENAELNG--LDGDRHRFIVGDVFKWLRKAERR--------------GEKFDLIILDPPSFARSKKQEFSAQRDYKDL  318 (393)
T ss_pred             HHHHHHHhcC--CCccceeeehhhHHHHHHHHHhc--------------CCcccEEEECCcccccCcccchhHHHHHHHH
Confidence            9999999999  85 47899999999999987653              4679999999999754   234445555544


Q ss_pred             h---cCCCCCCCEEEEE-EcccCCChhHHhHhh--hcCCCceEEEEeecccCCCCC
Q psy16898        275 E---FGKLSRPPVLYLY-CFLPKMDLETKKKIK--SYDPSYATLIRGIRRLSSDGP  324 (324)
Q Consensus       275 ~---~~~~~~~g~vh~y-~f~~~~~~~~~~~v~--~y~~~~~~~i~~~~~~~~d~~  324 (324)
                      .   +..++++|++..+ |....+.+.+.+.+.  ....+...++.+...|+||||
T Consensus       319 ~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~~~~~~~~D~p  374 (393)
T COG1092         319 NDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEIEGEGQPPDHP  374 (393)
T ss_pred             HHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEeeccCCCCCcc
Confidence            3   4567788887755 555557777788773  467778899999999999997

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.96  E-value=9.2e-29  Score=228.28  Aligned_cols=238  Identities=20%  Similarity=0.249  Sum_probs=161.2

Q ss_pred             eeEEECCEEEEEeCc-hhhhhHHHHHHHHHhhCCCceEEEEcCC--CC---CcccccceeeEEccCCCeEEEEEeCCeEE
Q psy16898         63 SFTSVGHIVHCNLRE-ELIEHKFIIGRVLLDKVPSCETVVNKAH--TI---DNTYRNFQMELLAGKDCMVTMHKENGCTF  136 (324)
Q Consensus        63 ~~d~~G~i~vi~~~~-~~~~~~~~I~~~l~~~~~~i~~V~~k~~--~~---~~~~~~~~~~~l~G~~~~~~~~~e~g~~f  136 (324)
                      -+|+||+.+++++.. .+..++..|.+.|....+  +.++....  ..   .+.......++++|+.+..+++.|+|++|
T Consensus        18 ~VD~y~~~lvvq~~~~~~~~~~~~l~~~L~~l~~--~~~~~~~~~~~~~~~~r~~~~~~~~~l~G~~~~~~~v~E~gl~f   95 (286)
T PF10672_consen   18 TVDRYGDVLVVQLYSEGMERFLDELREALEALIP--PGIYEKKQGRSIVLRKREKEGAPSEVLYGEPPEFFTVEENGLKF   95 (286)
T ss_dssp             EEEEETTEEEEEE-SHHHHCTHHHHHHHHHHHHC--CCECEEEEGGGCCCCHHTTTT-EEEEEESS-SSEEEEEETTEEE
T ss_pred             EEEEECCEEEEEECCcChHHHHHHHHHHHHHHhh--cceeeeccccceeehhhhccCCCceEEecCCCCceEEEECCEEE
Confidence            689999999999754 577788889988886543  22322211  11   11112335678899976667789999999


Q ss_pred             EEeccc-----eeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCC
Q psy16898        137 KMDFSK-----VYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQ  210 (324)
Q Consensus       137 ~id~~~-----~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~  210 (324)
                      .+|+..     +|+++|   +.++.+....+|++|||+||+||+||+.+++.|+ +|++||.|..+++++++|+++|+  
T Consensus        96 ~v~l~~gqktGlFlDqR---~nR~~v~~~~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg--  170 (286)
T PF10672_consen   96 RVDLTDGQKTGLFLDQR---ENRKWVRKYAKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNG--  170 (286)
T ss_dssp             EEESSSSSSTSS-GGGH---HHHHHHHHHCTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT--
T ss_pred             EEEcCCCCcceEcHHHH---hhHHHHHHHcCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC--
Confidence            999864     899999   8888888888899999999999999999999998 99999999999999999999999  


Q ss_pred             CC-CCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHH---HHHHHhccchhhcCCCCCCCEEE
Q psy16898        211 VK-TPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVE---YVRYLKVLTREEFGKLSRPPVLY  286 (324)
Q Consensus       211 l~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~---~l~~~~~l~~~~~~~~~~~g~vh  286 (324)
                      ++ ++++++.+|+++++.....               ..+||+||+|||.++..   ....+..+....+..++++|.+.
T Consensus       171 ~~~~~~~~~~~Dvf~~l~~~~~---------------~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~  235 (286)
T PF10672_consen  171 LDLDRHRFIQGDVFKFLKRLKK---------------GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLL  235 (286)
T ss_dssp             -CCTCEEEEES-HHHHHHHHHH---------------TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             CCccceEEEecCHHHHHHHHhc---------------CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            86 5899999999999876433               24699999999997532   11111111111233455678877


Q ss_pred             EEEcccC-CChhHHhHhhhcCCCceEEEEeecccCCCCC
Q psy16898        287 LYCFLPK-MDLETKKKIKSYDPSYATLIRGIRRLSSDGP  324 (324)
Q Consensus       287 ~y~f~~~-~~~~~~~~v~~y~~~~~~~i~~~~~~~~d~~  324 (324)
                      +.++++. +.+.+.+.++...  ...++++.-.++||||
T Consensus       236 ~~scs~~i~~~~l~~~~~~~a--~~~~~~~~~~~p~df~  272 (286)
T PF10672_consen  236 TCSCSHHISPDFLLEAVAEAA--REVEFIERLGQPPDFP  272 (286)
T ss_dssp             EEE--TTS-HHHHHHHHHHHH--HHCEEEEEEE------
T ss_pred             EEcCCcccCHHHHHHHHHHhC--ccceEeeeeccccccc
Confidence            6666665 4445566665544  4567778889999998

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.94  E-value=1.4e-25  Score=231.79  Aligned_cols=235  Identities=14%  Similarity=0.132  Sum_probs=172.3

Q ss_pred             ceeEEECCEEEEEeCc-h-------hhhhHHHHHHHHHhhC-CCceEEEEcCCCCCcccccceeeEEccCCCeEEEEEeC
Q psy16898         62 SSFTSVGHIVHCNLRE-E-------LIEHKFIIGRVLLDKV-PSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKEN  132 (324)
Q Consensus        62 ~~~d~~G~i~vi~~~~-~-------~~~~~~~I~~~l~~~~-~~i~~V~~k~~~~~~~~~~~~~~~l~G~~~~~~~~~e~  132 (324)
                      --+|+||+++++|+.. .       +...++.|.++|.+.. ...++|+.|....  .. +.......|+.+..+.+.|+
T Consensus       430 l~vD~y~~~~vvq~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~i~~k~~~~--~~-g~~~~~~~g~~~~~~~v~e~  506 (702)
T PRK11783        430 VAVDRYGDWVVVQEYAAPKTIDEEKARQRLFDALAATPEVLGIPPNKVVLKTRER--QK-GKNQYQKLAEKGEFLEVTEY  506 (702)
T ss_pred             eEEEEECCEEEEEECCCccccCHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeehh--cc-CcchhhhccCCCceEEEEEC
Confidence            5789999999999753 3       6678888999888762 1357899883321  11 22111111554455678899


Q ss_pred             CeEEEEeccc-----eeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHH
Q psy16898        133 GCTFKMDFSK-----VYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRL  206 (324)
Q Consensus       133 g~~f~id~~~-----~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~  206 (324)
                      |++|.+|+..     +|+++|   +.++++..+.+|++|||+|||+|.|++.+++.|+ +|+++|+|+.|++.|++|++.
T Consensus       507 g~~f~v~~~~~~~tG~flDqr---~~R~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~  583 (702)
T PRK11783        507 GAKLLVNLTDYLDTGLFLDHR---PTRRMIGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL  583 (702)
T ss_pred             CEEEEEEcCCCCcceECHHHH---HHHHHHHHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            9999999765     789998   6677777777899999999999999999999887 799999999999999999999


Q ss_pred             hCCCCC-CCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH-----HHHHHHhccc---hhhcC
Q psy16898        207 NERQVK-TPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV-----EYVRYLKVLT---REEFG  277 (324)
Q Consensus       207 n~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~-----~~l~~~~~l~---~~~~~  277 (324)
                      |+  +. ++++++++|+.+++...                 +..||.||+|||+.+.     ...+..+.+.   .....
T Consensus       584 ng--~~~~~v~~i~~D~~~~l~~~-----------------~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~  644 (702)
T PRK11783        584 NG--LSGRQHRLIQADCLAWLKEA-----------------REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKR  644 (702)
T ss_pred             hC--CCccceEEEEccHHHHHHHc-----------------CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHH
Confidence            99  86 58999999999987542                 1359999999998542     1111111111   11233


Q ss_pred             CCCCCCEEEEEEcccCCChhHHhHhhhcCCCceEEEEeecccCCCCC
Q psy16898        278 KLSRPPVLYLYCFLPKMDLETKKKIKSYDPSYATLIRGIRRLSSDGP  324 (324)
Q Consensus       278 ~~~~~g~vh~y~f~~~~~~~~~~~v~~y~~~~~~~i~~~~~~~~d~~  324 (324)
                      .++++|++.+.++...-... .+.  ....+..+++++...|++|||
T Consensus       645 lL~~gG~l~~~~~~~~~~~~-~~~--~~~~g~~~~~i~~~~~~~Dhp  688 (702)
T PRK11783        645 LLRPGGTLYFSNNKRGFKMD-EEG--LAKLGLKAEEITAKTLPPDFA  688 (702)
T ss_pred             HcCCCCEEEEEeCCccCChh-HHH--HHhCCCeEEEEecCCCCCCCC
Confidence            56678998876665543322 111  234678999999999999998

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=6.9e-22  Score=192.56  Aligned_cols=211  Identities=20%  Similarity=0.300  Sum_probs=162.5

Q ss_pred             eccCCChHHHHHhccCCCCCCceeEEECCEEEEEeCchhhhhHHHHHHHHHhhCCCceEEEEcCCCC-CcccccceeeEE
Q psy16898         41 TYDNFSAEDILKAILPDNVAMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTI-DNTYRNFQMELL  119 (324)
Q Consensus        41 ~y~~~~~~~~l~~~~p~~~~~~~~d~~G~i~vi~~~~~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~-~~~~~~~~~~~l  119 (324)
                      .|+.....+.|+.++    .+.+.    +++++.+... .+......+.+++.++.+.+++++.+.. .+...+.+...+
T Consensus       181 ~y~~~~~~g~l~~~~----~~~g~----~~~i~~v~~~-~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~i~g~~~~~~  251 (432)
T COG2265         181 PYNEKKKKGILRLIV----LREGQ----EVMVRLVTKH-LPELEQALRELLEAFPEIKGIVQNINRAKTNVIEGDEEITL  251 (432)
T ss_pred             ccchhhccceEEEEE----eccCc----eEEEEEEecc-chhHHHHHHHHHHhhhhcceEEEEecCCCCceEEcceeEEE
Confidence            455555677777766    44443    3555554332 5566777888888899899988887764 445555566666


Q ss_pred             ccCCCeEEEEEeCCeEEEEeccceeecCcChHHHHH--HHhhcc--CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHH
Q psy16898        120 AGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHER--VTKEVR--EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPD  195 (324)
Q Consensus       120 ~G~~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~--~~~~~~--~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~  195 (324)
                      +|.. .   .+| |..|.+++..|||.+..++|.+.  +++.+.  ++++|||+|||+|+||+++|++..+|+|+|++++
T Consensus       252 ~~~~-~---i~e-~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~  326 (432)
T COG2265         252 YGLE-S---IRE-GVSFQISPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPE  326 (432)
T ss_pred             eccc-c---ccc-ceEEEeCCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHH
Confidence            6654 2   233 99999999999999998888774  344444  6789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh--HHHHHHHhccch
Q psy16898        196 SYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA--VEYVRYLKVLTR  273 (324)
Q Consensus       196 a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a--~~~l~~~~~l~~  273 (324)
                      |++.|++|++.|+  +. |++|..+|+.++......               +..||.||.|||+..  .++++.+..+++
T Consensus       327 aV~~A~~NA~~n~--i~-N~~f~~~~ae~~~~~~~~---------------~~~~d~VvvDPPR~G~~~~~lk~l~~~~p  388 (432)
T COG2265         327 AVEAAQENAAANG--ID-NVEFIAGDAEEFTPAWWE---------------GYKPDVVVVDPPRAGADREVLKQLAKLKP  388 (432)
T ss_pred             HHHHHHHHHHHcC--CC-cEEEEeCCHHHHhhhccc---------------cCCCCEEEECCCCCCCCHHHHHHHHhcCC
Confidence            9999999999999  87 699999999999876431               245999999999964  468988888776


Q ss_pred             hhcCCCCCCCEEEEEEcc
Q psy16898        274 EEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       274 ~~~~~~~~~g~vh~y~f~  291 (324)
                      .        .++++.|--
T Consensus       389 ~--------~IvYVSCNP  398 (432)
T COG2265         389 K--------RIVYVSCNP  398 (432)
T ss_pred             C--------cEEEEeCCH
Confidence            5        577777753

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.87  E-value=8.1e-21  Score=186.55  Aligned_cols=209  Identities=17%  Similarity=0.234  Sum_probs=153.6

Q ss_pred             eccCCChHHHHHhccCCCCCCceeEEECCEEEEEe-CchhhhhHHHHHHHHHhhCCCceEEEEcCCCC-CcccccceeeE
Q psy16898         41 TYDNFSAEDILKAILPDNVAMSSFTSVGHIVHCNL-REELIEHKFIIGRVLLDKVPSCETVVNKAHTI-DNTYRNFQMEL  118 (324)
Q Consensus        41 ~y~~~~~~~~l~~~~p~~~~~~~~d~~G~i~vi~~-~~~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~-~~~~~~~~~~~  118 (324)
                      .|+..+.++.++++.    ++.+. .-|+++++.+ .....+..+.+++.+.+.+|.+++|+++.+.. .....+...+.
T Consensus       172 ~~~~~~~~g~lr~i~----ir~~~-~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~v~~v~~~~~~~~~~~~~g~~~~~  246 (431)
T TIGR00479       172 IYLEHKELGKARHGV----LRIGR-RTGELLLVLRTALEGFPHKEELALELQERYPDVKSICQNINPEKTNVIFGEETEQ  246 (431)
T ss_pred             ccccccCcccceEEE----EEEec-cCCCEEEEEEECCCccccHHHHHHHHHHhCCCceEEEEEeCCCCCCeeeCCceEE
Confidence            345455667777766    55543 2477766543 33333455678888888888999998876543 33444556788


Q ss_pred             EccCCCeEEEEEeCCeEEEEeccceeecCcChHHHHH--HHhh--ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCH
Q psy16898        119 LAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHER--VTKE--VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNP  194 (324)
Q Consensus       119 l~G~~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~--~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~  194 (324)
                      ++|++ . +..+.+|++|.+++..||+.++.+++...  +.+.  +.++++|||+|||+|.+++.+|+.+.+|+|+|+|+
T Consensus       247 l~G~~-~-~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~  324 (431)
T TIGR00479       247 IAGEG-P-IYEKSGDLSFSLSARDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVP  324 (431)
T ss_pred             EeCCC-e-EEEEECCEEEEECCCceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCH
Confidence            89985 2 33446899999999999997776655442  3333  34678999999999999999999888999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh--HHHHHHHhccc
Q psy16898        195 DSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA--VEYVRYLKVLT  272 (324)
Q Consensus       195 ~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a--~~~l~~~~~l~  272 (324)
                      .|++.|++|++.|+  +. +++++++|+.+++......              ...||.|++|||+..  .++++.+..++
T Consensus       325 ~av~~a~~n~~~~~--~~-nv~~~~~d~~~~l~~~~~~--------------~~~~D~vi~dPPr~G~~~~~l~~l~~l~  387 (431)
T TIGR00479       325 ESVEKAQQNAELNG--IA-NVEFLAGTLETVLPKQPWA--------------GQIPDVLLLDPPRKGCAAEVLRTIIELK  387 (431)
T ss_pred             HHHHHHHHHHHHhC--CC-ceEEEeCCHHHHHHHHHhc--------------CCCCCEEEECcCCCCCCHHHHHHHHhcC
Confidence            99999999999999  86 8999999998876543211              134999999999863  56777766554


Q ss_pred             h
Q psy16898        273 R  273 (324)
Q Consensus       273 ~  273 (324)
                      +
T Consensus       388 ~  388 (431)
T TIGR00479       388 P  388 (431)
T ss_pred             C
Confidence            4

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.86  E-value=1.4e-20  Score=181.63  Aligned_cols=214  Identities=17%  Similarity=0.216  Sum_probs=152.9

Q ss_pred             eccCCChHHHHHhccCCCCCCceeEEECCEEEEEe-Cc-hhhhhHHHHHHHHHhhCCCceEEEEcCCCC-Ccccccceee
Q psy16898         41 TYDNFSAEDILKAILPDNVAMSSFTSVGHIVHCNL-RE-ELIEHKFIIGRVLLDKVPSCETVVNKAHTI-DNTYRNFQME  117 (324)
Q Consensus        41 ~y~~~~~~~~l~~~~p~~~~~~~~d~~G~i~vi~~-~~-~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~-~~~~~~~~~~  117 (324)
                      .|+..+.++.|+++.    ++.+. ..|++++..+ .. ...+..+.+.+.+.+.++++.+|+++.+.. .+...+....
T Consensus       112 ~~~~~~~~g~lr~i~----ir~~~-~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~  186 (374)
T TIGR02085       112 PYNVAKKKGELKFIL----LTESE-NSGQLMLRFVLRSETKLAQIRRALPWLIEQLPQLEVISVNIQPVHMAILEGEEEI  186 (374)
T ss_pred             CccccCCCccceEEE----EEEec-cCCCEEEEEEECCCccchhHHHHHHHHHHHCCCcEEEEEEECCCCCCceECceEE
Confidence            456667778888877    55543 2477766543 22 122344455565666678888887654432 2333344456


Q ss_pred             EEccCCCeEEEEEeCCeEEEEeccceeecCcChHHHHH--HHhhc--cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCC
Q psy16898        118 LLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHER--VTKEV--REGDLVLDVFAGVGPFSIPAARRGAIVAANDLN  193 (324)
Q Consensus       118 ~l~G~~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~--~~~~~--~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~  193 (324)
                      .++|++ + +..+.+|++|.+++..||+.+....|...  +...+  .++.+|||+|||+|.+++.+|.++.+|+|+|+|
T Consensus       187 ~l~G~~-~-i~e~~~g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~  264 (374)
T TIGR02085       187 FLTEQQ-A-LPERFNDVPLVIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIE  264 (374)
T ss_pred             EEcCCC-e-eEEEECCEEEEECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECC
Confidence            678875 3 22335799999999999998887777653  22333  356899999999999999999988899999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh--HHHHHHHhcc
Q psy16898        194 PDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA--VEYVRYLKVL  271 (324)
Q Consensus       194 ~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a--~~~l~~~~~l  271 (324)
                      +.|++.|++|++.|+  ++ +++++++|+.+++...                 ...||.|++|||+..  ..+++.+..+
T Consensus       265 ~~av~~a~~N~~~~~--~~-~~~~~~~d~~~~~~~~-----------------~~~~D~vi~DPPr~G~~~~~l~~l~~~  324 (374)
T TIGR02085       265 SEAIACAQQSAQMLG--LD-NLSFAALDSAKFATAQ-----------------MSAPELVLVNPPRRGIGKELCDYLSQM  324 (374)
T ss_pred             HHHHHHHHHHHHHcC--CC-cEEEEECCHHHHHHhc-----------------CCCCCEEEECCCCCCCcHHHHHHHHhc
Confidence            999999999999999  86 8999999998876431                 123999999999963  3566666554


Q ss_pred             chhhcCCCCCCCEEEEEE
Q psy16898        272 TREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       272 ~~~~~~~~~~~g~vh~y~  289 (324)
                      ++        ..++++.|
T Consensus       325 ~p--------~~ivyvsc  334 (374)
T TIGR02085       325 AP--------KFILYSSC  334 (374)
T ss_pred             CC--------CeEEEEEe
Confidence            43        36777776

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.86  E-value=5.6e-20  Score=173.55  Aligned_cols=204  Identities=17%  Similarity=0.209  Sum_probs=143.7

Q ss_pred             eccCCChHHHHHhccCCCCCCceeEEECCEEEEEe-Cc-hhhhhHHHHHHHHHhhCCCceEEEEcCCCC-Ccccccceee
Q psy16898         41 TYDNFSAEDILKAILPDNVAMSSFTSVGHIVHCNL-RE-ELIEHKFIIGRVLLDKVPSCETVVNKAHTI-DNTYRNFQME  117 (324)
Q Consensus        41 ~y~~~~~~~~l~~~~p~~~~~~~~d~~G~i~vi~~-~~-~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~-~~~~~~~~~~  117 (324)
                      .|+..+.++.||++.    ++.+. ..|++++..+ .. ...+....+.+.+...++++++|++..+.. .+...+....
T Consensus        52 ~~~~~~~~g~lr~~~----ir~~~-~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~  126 (315)
T PRK03522         52 PYNVARKRGELKYIL----LTESQ-SDGELMLRFVLRSETKLARLRRALPWLQAQLPQLKVISVNIQPVHMAILEGEEEI  126 (315)
T ss_pred             CCcCCCCCceeeEEE----EEeec-CCCCEEEEEEECCCccchhHHHHHHHHHHHCCCCEEEEEEECCCCCCcccCCceE
Confidence            355557778899888    65542 2477766543 32 222333445555666678888886654442 2333344456


Q ss_pred             EEccCCCeEEEEEeCCeEEEEeccceeecCcChHHHHH--HHhhcc--CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCC
Q psy16898        118 LLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHER--VTKEVR--EGDLVLDVFAGVGPFSIPAARRGAIVAANDLN  193 (324)
Q Consensus       118 ~l~G~~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~--~~~~~~--~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~  193 (324)
                      .++|.+ + ....-+|+.|.+++..||+.+..+++...  +.+.+.  ++.+|||+|||+|.+++.+|+++++|+|+|+|
T Consensus       127 ~l~g~~-~-~~~~~~~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s  204 (315)
T PRK03522        127 FLTEQQ-A-LPERFNGVPLFIRPQSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEIS  204 (315)
T ss_pred             EEeCCC-e-EEEEECCEEEEECCCeeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCC
Confidence            678875 2 22234799999999999998886666642  223332  57899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH--HHHHHHhcc
Q psy16898        194 PDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV--EYVRYLKVL  271 (324)
Q Consensus       194 ~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~--~~l~~~~~l  271 (324)
                      +.|++.|++|++.|+  +. +++++++|+.++....                 ...||.|++|||+...  ..++.+..+
T Consensus       205 ~~av~~A~~n~~~~~--l~-~v~~~~~D~~~~~~~~-----------------~~~~D~Vv~dPPr~G~~~~~~~~l~~~  264 (315)
T PRK03522        205 AEAIACAKQSAAELG--LT-NVQFQALDSTQFATAQ-----------------GEVPDLVLVNPPRRGIGKELCDYLSQM  264 (315)
T ss_pred             HHHHHHHHHHHHHcC--CC-ceEEEEcCHHHHHHhc-----------------CCCCeEEEECCCCCCccHHHHHHHHHc
Confidence            999999999999999  85 8999999998875421                 1249999999998632  344444333

>KOG1227|consensus

Probab=99.85  E-value=1.6e-21  Score=176.56  Aligned_cols=208  Identities=22%  Similarity=0.210  Sum_probs=162.6

Q ss_pred             CCceeEEECCEEEEEeCchhhhhHHHHHHHHHhhCCCce--EEEEcCCCC-CcccccceeeEEccCCCeEEEEEeCCeEE
Q psy16898         60 AMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCE--TVVNKAHTI-DNTYRNFQMELLAGKDCMVTMHKENGCTF  136 (324)
Q Consensus        60 ~~~~~d~~G~i~vi~~~~~~~~~~~~I~~~l~~~~~~i~--~V~~k~~~~-~~~~~~~~~~~l~G~~~~~~~~~e~g~~f  136 (324)
                      +|.+|++||+++++..++-..+.-..|.+.++.....-.  ..+.|...+ ....|.+..+.|+|+. -|+.+.+||++|
T Consensus        90 LP~kw~~~g~lvl~~~~sF~~~~W~~~~~e~w~~va~sl~~~r~ar~~~vs~~~~R~~~v~~L~Gd~-gWV~~v~NGI~~  168 (351)
T KOG1227|consen   90 LPLKWEIYGPLVLFPVNSFNHPIWQKIFQELWSVVAKSLGVSRLARNRLVSHLARRPPNVQPLYGDL-GWVKHVQNGITQ  168 (351)
T ss_pred             ccccceecCCEEEEeccccCChhHHHHHHHHHHhhhhccchhhhhhccccCccccCCCccccccccc-cceeehhcCeEE
Confidence            899999999999998776544555566666665432111  122233222 3346788999999986 688899999999


Q ss_pred             EEeccceeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHH-HHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCC
Q psy16898        137 KMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSI-PAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTP  214 (324)
Q Consensus       137 ~id~~~~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al-~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~  214 (324)
                      .+|+.+.+|+.....|..|+......|+.|+|||+|.|+|++ .+.+.|| .|+|+|.||.+++.+++|++.|+  +.++
T Consensus       169 ~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~--V~~r  246 (351)
T KOG1227|consen  169 IWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANN--VMDR  246 (351)
T ss_pred             EechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcc--hHHH
Confidence            999999999999999999999998899999999999999999 6667777 99999999999999999999999  8766


Q ss_pred             eEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECC-hhhhHHHHHHHhccchhhcCCCCCCCEEEEEEcccC
Q psy16898        215 ISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNL-PATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       215 v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~np-P~~a~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                      ...+.+|.+....                   ....|+|.+.+ |.+...+.-|...|++.      .|+++|+|.-.+.
T Consensus       247 ~~i~~gd~R~~~~-------------------~~~AdrVnLGLlPSse~~W~~A~k~Lk~e------ggsilHIHenV~~  301 (351)
T KOG1227|consen  247 CRITEGDNRNPKP-------------------RLRADRVNLGLLPSSEQGWPTAIKALKPE------GGSILHIHENVKD  301 (351)
T ss_pred             HHhhhccccccCc-------------------cccchheeeccccccccchHHHHHHhhhc------CCcEEEEeccccc
Confidence            6667777654322                   34589999986 66555566666668875      2459999999987


Q ss_pred             CC
Q psy16898        294 MD  295 (324)
Q Consensus       294 ~~  295 (324)
                      ++
T Consensus       302 s~  303 (351)
T KOG1227|consen  302 SD  303 (351)
T ss_pred             cc
Confidence            76

>KOG2187|consensus

Probab=99.79  E-value=2.7e-18  Score=166.04  Aligned_cols=250  Identities=16%  Similarity=0.232  Sum_probs=166.2

Q ss_pred             ccCCChHHHHHhccCCCCCCceeEEECCEEEEEe-----Cc-hhhhhHHHHHHHHHhhCCC----ceEEEEcCCC-CCcc
Q psy16898         42 YDNFSAEDILKAILPDNVAMSSFTSVGHIVHCNL-----RE-ELIEHKFIIGRVLLDKVPS----CETVVNKAHT-IDNT  110 (324)
Q Consensus        42 y~~~~~~~~l~~~~p~~~~~~~~d~~G~i~vi~~-----~~-~~~~~~~~I~~~l~~~~~~----i~~V~~k~~~-~~~~  110 (324)
                      |+.+++.|..|.+.    +++.+ +-|..+++.+     .. .+...++.|.+.+.+ .|+    ++.+|+-... ++..
T Consensus       256 ~~~~~~~G~wk~Lt----VRt~~-~~~~~~il~i~~~~l~~e~l~e~~~ki~~~f~~-~~~~a~~l~~l~~q~~~~ts~~  329 (534)
T KOG2187|consen  256 YDDFPKGGFWKQLT----VRTEF-RGGAMAILTIHPCKLATEELTELKKKIEQRFLS-GPGFASGLRVLYLQESGHTSDG  329 (534)
T ss_pred             ccccCCCCceeeeE----EEecc-cCceEEEEEEEeecccHHHHHHHHHHHHHHHhc-ccccccceeEEEEecccccccC
Confidence            47788899999988    66433 3233344332     33 344455556665553 232    3444443332 2222


Q ss_pred             cccceeeEEccCCCeEEEEEeCCeEEEEeccceeecCcChHHHHH-HHh---hccCCCEEEEEcCCCchhHHHHHhcCCE
Q psy16898        111 YRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHER-VTK---EVREGDLVLDVFAGVGPFSIPAARRGAI  186 (324)
Q Consensus       111 ~~~~~~~~l~G~~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~-~~~---~~~~g~~VLDl~~G~G~~al~~a~~g~~  186 (324)
                      -.+....++.|++ ++ ...-.|++|+|++..|||++..++|... .+.   .+..++.++|+|||||.+++.+|++..+
T Consensus       330 ~~~~~~~l~~~~~-~I-~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~  407 (534)
T KOG2187|consen  330 QEGKPLQLVGGDP-YI-TESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKR  407 (534)
T ss_pred             CCCCCeEEEcccc-EE-EeecCCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccc
Confidence            3446788898875 32 2235999999999999999998888874 332   2567889999999999999999998889


Q ss_pred             EEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCccc-EEEECChhhhH--H
Q psy16898        187 VAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVA-RVIMNLPATAV--E  263 (324)
Q Consensus       187 V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD-~Vi~npP~~a~--~  263 (324)
                      |+|+|++++|++.|++|++.|+  ++ |.+|+++-+.+.+..+....             -..-+ ++|+|||+...  .
T Consensus       408 ViGvEi~~~aV~dA~~nA~~Ng--is-Na~Fi~gqaE~~~~sl~~~~-------------~~~~~~v~iiDPpR~Glh~~  471 (534)
T KOG2187|consen  408 VIGVEISPDAVEDAEKNAQING--IS-NATFIVGQAEDLFPSLLTPC-------------CDSETLVAIIDPPRKGLHMK  471 (534)
T ss_pred             eeeeecChhhcchhhhcchhcC--cc-ceeeeecchhhccchhcccC-------------CCCCceEEEECCCcccccHH
Confidence            9999999999999999999999  98 89999998888776654310             01234 78999999755  4


Q ss_pred             HHHHHhccchhhcCCCCCCCEEEEEEcccCCChhHHhHhh--hcCCCc----eEEEEeecccCCC
Q psy16898        264 YVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIK--SYDPSY----ATLIRGIRRLSSD  322 (324)
Q Consensus       264 ~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~--~y~~~~----~~~i~~~~~~~~d  322 (324)
                      ++.+++.++..       .-++++.|.-+.......+...  +|.+..    ..+++.|...++.
T Consensus       472 ~ik~l~~~~~~-------~rlvyvSCn~~t~ar~v~~lc~~~~~~~~~g~fr~~~~~~VDlfP~T  529 (534)
T KOG2187|consen  472 VIKALRAYKNP-------RRLVYVSCNPHTAARNVIDLCSSPKYRLKKGFFRLVKAVGVDLFPHT  529 (534)
T ss_pred             HHHHHHhccCc-------cceEEEEcCHHHhhhhHHHhhcCccccccccccceeeeeecccCCCC
Confidence            77777776632       1355666665543333333331  122111    2455666555554

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.76  E-value=9.6e-17  Score=154.24  Aligned_cols=198  Identities=17%  Similarity=0.224  Sum_probs=128.4

Q ss_pred             ECCEEEEEeCc-hhhhhHHHHHHHHHhhCCCceEEEEcCCCCCcccccceeeEEccCCCeEEEEEe--CC--eEEEEecc
Q psy16898         67 VGHIVHCNLRE-ELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKE--NG--CTFKMDFS  141 (324)
Q Consensus        67 ~G~i~vi~~~~-~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~~~~~~~~l~G~~~~~~~~~e--~g--~~f~id~~  141 (324)
                      .|++++..+.. ...+....+++.+.+++|++ ++..+         +....+++|.+ ++. .+-  +|  +.|++++.
T Consensus       115 ~g~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~-~i~~~---------~~~~~~~~G~~-~i~-e~l~~~~~~~~~~~~~~  182 (362)
T PRK05031        115 SGEILVSLLYHKKLDEEWEQAAKALRDALFNV-HLIGR---------SRKQKIVLDQD-YVD-ERLPVAGREFIYRQVEN  182 (362)
T ss_pred             CCCEEEEEEECCCCChHHHHHHHHHHHHCCCc-EEEec---------CCCcEEEcCCC-EEE-EEEecCCcEEEEEeCCC
Confidence            36665554322 11123345666676677766 55221         11235678875 322 222  56  89999999


Q ss_pred             ceeecCcChHHHHH--HHhhcc-CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy16898        142 KVYWNSRLSTEHER--VTKEVR-EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISAT  218 (324)
Q Consensus       142 ~~f~~~r~~~e~~~--~~~~~~-~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~  218 (324)
                      .|||.++.++|...  +.+.+. .+.+|||+|||+|.|++++++...+|+|+|+++.|++.|++|++.|+  +. +++++
T Consensus       183 sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~--~~-~v~~~  259 (362)
T PRK05031        183 SFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANG--ID-NVQII  259 (362)
T ss_pred             CeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhC--CC-cEEEE
Confidence            99998887777653  333343 23579999999999999999877799999999999999999999999  86 89999


Q ss_pred             eccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh--HHHHHHHhccchhhcCCCCCCCEEEEEEcc
Q psy16898        219 QKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA--VEYVRYLKVLTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       219 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a--~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~  291 (324)
                      ++|+.+++............  .+.......||.|++|||+..  .+.++.+..  +        ..++++.|--
T Consensus       260 ~~d~~~~l~~~~~~~~~~~~--~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~--~--------~~ivyvSC~p  322 (362)
T PRK05031        260 RMSAEEFTQAMNGVREFNRL--KGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA--Y--------ERILYISCNP  322 (362)
T ss_pred             ECCHHHHHHHHhhccccccc--ccccccCCCCCEEEECCCCCCCcHHHHHHHHc--c--------CCEEEEEeCH
Confidence            99999987653211000000  000000124899999999853  234444433  1        3577777654

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.73  E-value=6.4e-17  Score=154.87  Aligned_cols=135  Identities=20%  Similarity=0.325  Sum_probs=87.3

Q ss_pred             EeCCeEEEEeccceeecCcChHHHHH--HHhhccC-CCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH
Q psy16898        130 KENGCTFKMDFSKVYWNSRLSTEHER--VTKEVRE-GDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRL  206 (324)
Q Consensus       130 ~e~g~~f~id~~~~f~~~r~~~e~~~--~~~~~~~-g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~  206 (324)
                      .+.++.|++++.+|||.+..+++.+.  +++.+.. +..|||+|||+|+||+++|+.+.+|+|||+++.|++.|++|++.
T Consensus       161 ~~~~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~  240 (352)
T PF05958_consen  161 QDKGLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKL  240 (352)
T ss_dssp             CCCTEEEEEETTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHH
T ss_pred             eccceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHH
Confidence            45689999999999998888877763  4444442 33899999999999999999999999999999999999999999


Q ss_pred             hCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH--HHHHHHh
Q psy16898        207 NERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV--EYVRYLK  269 (324)
Q Consensus       207 n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~--~~l~~~~  269 (324)
                      |+  +. |++|+++++.++.............  .+-......+|.||+|||+...  .+++.+.
T Consensus       241 N~--i~-n~~f~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~  300 (352)
T PF05958_consen  241 NG--ID-NVEFIRGDAEDFAKALAKAREFNRL--KGIDLKSFKFDAVILDPPRAGLDEKVIELIK  300 (352)
T ss_dssp             TT-----SEEEEE--SHHCCCHHCCS-GGTTG--GGS-GGCTTESEEEE---TT-SCHHHHHHHH
T ss_pred             cC--CC-cceEEEeeccchhHHHHhhHHHHhh--hhhhhhhcCCCEEEEcCCCCCchHHHHHHHh
Confidence            99  97 8999999988764432110000000  0000001358999999999643  3555443

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.69  E-value=6.4e-16  Score=152.42  Aligned_cols=135  Identities=19%  Similarity=0.280  Sum_probs=105.0

Q ss_pred             eCCeEEEEeccceeecCcChHHHHH--HHhhc--cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH
Q psy16898        131 ENGCTFKMDFSKVYWNSRLSTEHER--VTKEV--REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRL  206 (324)
Q Consensus       131 e~g~~f~id~~~~f~~~r~~~e~~~--~~~~~--~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~  206 (324)
                      .+|+.|++++..||+.++.++|...  +++.+  .++.+|||+|||+|.+++.+|+.+++|+|+|+|+.|++.|++|++.
T Consensus       262 ~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~  341 (443)
T PRK13168        262 EFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARR  341 (443)
T ss_pred             cCCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH
Confidence            5799999999999998876666542  34433  4778999999999999999999888999999999999999999999


Q ss_pred             hCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH-HHHHHHhccchhhcCCCCCCCEE
Q psy16898        207 NERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV-EYVRYLKVLTREEFGKLSRPPVL  285 (324)
Q Consensus       207 n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~-~~l~~~~~l~~~~~~~~~~~g~v  285 (324)
                      |+  +. +++++++|+.+.+......              ...||.|++|||+... +.+..+..+++        .+++
T Consensus       342 ~~--~~-~v~~~~~d~~~~l~~~~~~--------------~~~fD~Vi~dPPr~g~~~~~~~l~~~~~--------~~iv  396 (443)
T PRK13168        342 NG--LD-NVTFYHANLEEDFTDQPWA--------------LGGFDKVLLDPPRAGAAEVMQALAKLGP--------KRIV  396 (443)
T ss_pred             cC--CC-ceEEEEeChHHhhhhhhhh--------------cCCCCEEEECcCCcChHHHHHHHHhcCC--------CeEE
Confidence            99  86 7999999998865332110              1349999999999632 34444444433        3666


Q ss_pred             EEEEc
Q psy16898        286 YLYCF  290 (324)
Q Consensus       286 h~y~f  290 (324)
                      ++.|-
T Consensus       397 yvSCn  401 (443)
T PRK13168        397 YVSCN  401 (443)
T ss_pred             EEEeC
Confidence            66663

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.66  E-value=2e-15  Score=144.56  Aligned_cols=159  Identities=15%  Similarity=0.211  Sum_probs=109.4

Q ss_pred             eeEEccCCCeEEEEEe--CC--eEEEEeccceeecCcChHHHHH--HHhhcc-CCCEEEEEcCCCchhHHHHHhcCCEEE
Q psy16898        116 MELLAGKDCMVTMHKE--NG--CTFKMDFSKVYWNSRLSTEHER--VTKEVR-EGDLVLDVFAGVGPFSIPAARRGAIVA  188 (324)
Q Consensus       116 ~~~l~G~~~~~~~~~e--~g--~~f~id~~~~f~~~r~~~e~~~--~~~~~~-~g~~VLDl~~G~G~~al~~a~~g~~V~  188 (324)
                      ..+++|.+ +. ....  +|  ++|.+++..|||.+..+.+...  +.+.+. .+++|||+|||+|.|++.+++...+|+
T Consensus       146 ~~~l~G~~-~~-~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~~v~  223 (353)
T TIGR02143       146 KKIVLDQD-YV-DETLPVAGREFIYRQVENSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVL  223 (353)
T ss_pred             cEEEcCCC-EE-EEEEecCCeEEEEEECCCCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCCEEE
Confidence            35667775 32 2222  56  8999999999998886666542  334443 245799999999999999998777999


Q ss_pred             EEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH-hhhhhcccCCCCCCCCcccEEEECChhhh--HHHH
Q psy16898        189 ANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA-HLVRWSQSEGNSTGGTAVARVIMNLPATA--VEYV  265 (324)
Q Consensus       189 avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~fD~Vi~npP~~a--~~~l  265 (324)
                      |+|+++.|++.|++|++.|+  +. +++++++|+.+++...... .+.+ .  .+.......||.|++|||+..  ...+
T Consensus       224 ~vE~~~~av~~a~~n~~~~~--~~-~v~~~~~d~~~~~~~~~~~~~~~~-~--~~~~~~~~~~d~v~lDPPR~G~~~~~l  297 (353)
T TIGR02143       224 ATEIAKPSVNAAQYNIAANN--ID-NVQIIRMSAEEFTQAMNGVREFRR-L--KGIDLKSYNCSTIFVDPPRAGLDPDTC  297 (353)
T ss_pred             EEECCHHHHHHHHHHHHHcC--CC-cEEEEEcCHHHHHHHHhhcccccc-c--cccccccCCCCEEEECCCCCCCcHHHH
Confidence            99999999999999999999  86 7999999999987542110 0000 0  000000113899999999853  3455


Q ss_pred             HHHhccchhhcCCCCCCCEEEEEEccc
Q psy16898        266 RYLKVLTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       266 ~~~~~l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                      +.+..  +        ..++++.|--.
T Consensus       298 ~~l~~--~--------~~ivYvsC~p~  314 (353)
T TIGR02143       298 KLVQA--Y--------ERILYISCNPE  314 (353)
T ss_pred             HHHHc--C--------CcEEEEEcCHH
Confidence            55543  2        36777776543

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.61  E-value=1.4e-14  Score=139.82  Aligned_cols=118  Identities=22%  Similarity=0.345  Sum_probs=94.0

Q ss_pred             ceeecCcChHHHHH---HHhhcc---CCCEEEEEcCCCchhHHHHHhc-CC-EEEEEeCCHHHHHHHHHHHHHhCCCCCC
Q psy16898        142 KVYWNSRLSTEHER---VTKEVR---EGDLVLDVFAGVGPFSIPAARR-GA-IVAANDLNPDSYAWLQASIRLNERQVKT  213 (324)
Q Consensus       142 ~~f~~~r~~~e~~~---~~~~~~---~g~~VLDl~~G~G~~al~~a~~-g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~  213 (324)
                      .+||++.+...|..   +++.+.   ++.+|||+|||+|.+++.+|+. ++ +|+++|+|+.|++.+++|++.|+  +. 
T Consensus        31 ~vFyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~--~~-  107 (382)
T PRK04338         31 PVFYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG--LE-  107 (382)
T ss_pred             CeeeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC--CC-
Confidence            47888887766652   334333   2369999999999999999874 44 99999999999999999999999  87 


Q ss_pred             CeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHH-hccchhhcCCCCCCCEEEEE
Q psy16898        214 PISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYL-KVLTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       214 ~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~-~~l~~~~~~~~~~~g~vh~y  288 (324)
                      +++++++|+..++..  .                ..||+|++|||..+..|++.+ ..++++        +++++.
T Consensus       108 ~~~v~~~Da~~~l~~--~----------------~~fD~V~lDP~Gs~~~~l~~al~~~~~~--------gilyvS  157 (382)
T PRK04338        108 NEKVFNKDANALLHE--E----------------RKFDVVDIDPFGSPAPFLDSAIRSVKRG--------GLLCVT  157 (382)
T ss_pred             ceEEEhhhHHHHHhh--c----------------CCCCEEEECCCCCcHHHHHHHHHHhcCC--------CEEEEE
Confidence            688999999887653  1                249999999997777898884 446554        777776

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.60  E-value=9.1e-15  Score=140.51  Aligned_cols=132  Identities=19%  Similarity=0.253  Sum_probs=104.3

Q ss_pred             EeCCeEEEEe-ccceeecCcChHHHHHHH---h---hccCC---CEEEEEcCCCchhHHHHHhc--CC-EEEEEeCCHHH
Q psy16898        130 KENGCTFKMD-FSKVYWNSRLSTEHERVT---K---EVREG---DLVLDVFAGVGPFSIPAARR--GA-IVAANDLNPDS  196 (324)
Q Consensus       130 ~e~g~~f~id-~~~~f~~~r~~~e~~~~~---~---~~~~g---~~VLDl~~G~G~~al~~a~~--g~-~V~avD~~~~a  196 (324)
                      +|+..+|.+. -..+|+||++...|...+   +   ...++   -+|||+|||+|.+|+.++++  |+ +|+++|+|+.|
T Consensus         2 ~EG~~~i~~p~~~~vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~A   81 (374)
T TIGR00308         2 KEGKAEILVPKKETVFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKA   81 (374)
T ss_pred             ccceEEEEecCCCCcccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHH
Confidence            4566666663 245899999887776422   2   12233   38999999999999999996  65 99999999999


Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhh
Q psy16898        197 YAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREE  275 (324)
Q Consensus       197 ~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~  275 (324)
                      ++.+++|++.|+  +. +++++++|+..++...                 ...||+|.+||+..+..|++++.. +++  
T Consensus        82 v~~i~~N~~~N~--~~-~~~v~~~Da~~~l~~~-----------------~~~fDvIdlDPfGs~~~fld~al~~~~~--  139 (374)
T TIGR00308        82 VESIKNNVEYNS--VE-NIEVPNEDAANVLRYR-----------------NRKFHVIDIDPFGTPAPFVDSAIQASAE--  139 (374)
T ss_pred             HHHHHHHHHHhC--CC-cEEEEchhHHHHHHHh-----------------CCCCCEEEeCCCCCcHHHHHHHHHhccc--
Confidence            999999999999  86 7999999999987653                 134999999998777789998876 544  


Q ss_pred             cCCCCCCCEEEEEE
Q psy16898        276 FGKLSRPPVLYLYC  289 (324)
Q Consensus       276 ~~~~~~~g~vh~y~  289 (324)
                            +|++++.+
T Consensus       140 ------~glL~vTa  147 (374)
T TIGR00308       140 ------RGLLLVTA  147 (374)
T ss_pred             ------CCEEEEEe
Confidence                  47888775

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.59  E-value=1.8e-14  Score=126.31  Aligned_cols=85  Identities=22%  Similarity=0.243  Sum_probs=73.2

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      -+|.+|||+|||+|.+++.++++|+ +|+++|.++.+++.+++|++.|+  +.++++++++|+.+++......       
T Consensus        48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~--~~~~~~~~~~D~~~~l~~~~~~-------  118 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLK--SGEQAEVVRNSALRALKFLAKK-------  118 (189)
T ss_pred             cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhC--CcccEEEEehhHHHHHHHhhcc-------
Confidence            3688999999999999999999998 99999999999999999999999  8767999999998887543211       


Q ss_pred             cCCCCCCCCcccEEEECChhhh
Q psy16898        240 SEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                             ...||+|++|||+..
T Consensus       119 -------~~~~dvv~~DPPy~~  133 (189)
T TIGR00095       119 -------PTFDNVIYLDPPFFN  133 (189)
T ss_pred             -------CCCceEEEECcCCCC
Confidence                   123899999999954

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.58  E-value=1.1e-14  Score=117.02  Aligned_cols=94  Identities=26%  Similarity=0.371  Sum_probs=76.2

Q ss_pred             CCEEEEEcCCCchhHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        163 GDLVLDVFAGVGPFSIPAARRG-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~~g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      |.+|||+|||+|.+++.+++.+ .+++|+|+||.+++.++.|+..++  +.++++++++|+.+......           
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~~~~~~-----------   67 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNG--LDDRVEVIVGDARDLPEPLP-----------   67 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCT--TTTTEEEEESHHHHHHHTCT-----------
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHcc--CCceEEEEECchhhchhhcc-----------
Confidence            5689999999999999999988 799999999999999999999998  87789999999998863221           


Q ss_pred             CCCCCCCcccEEEECChhhh------------HHHHHHHhc-cchh
Q psy16898        242 GNSTGGTAVARVIMNLPATA------------VEYVRYLKV-LTRE  274 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~npP~~a------------~~~l~~~~~-l~~~  274 (324)
                           ...||+|++|||+..            ..|++.+.. ++++
T Consensus        68 -----~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g  108 (117)
T PF13659_consen   68 -----DGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPG  108 (117)
T ss_dssp             -----TT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEE
T ss_pred             -----CceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCC
Confidence                 245999999999963            245555555 6654

...

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.57  E-value=1.5e-14  Score=127.67  Aligned_cols=111  Identities=19%  Similarity=0.218  Sum_probs=82.5

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .++.+|||+|||+|.+++.++.+++ +|+++|+++.+++.+++|++.++  +. +++++++|+.+++...          
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~--~~-~v~~~~~D~~~~l~~~----------  118 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLK--AG-NARVVNTNALSFLAQP----------  118 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhC--CC-cEEEEEchHHHHHhhc----------
Confidence            4678999999999999998766655 99999999999999999999999  86 7999999998876421          


Q ss_pred             cCCCCCCCCcccEEEECChhhhHHHHHHH-hccchhhcCCCCCCCEEEEEEcccCC
Q psy16898        240 SEGNSTGGTAVARVIMNLPATAVEYVRYL-KVLTREEFGKLSRPPVLYLYCFLPKM  294 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~-~~l~~~~~~~~~~~g~vh~y~f~~~~  294 (324)
                             ...||+|++|||+.. .+.+.. ..+...  ..+.+.+++++.+....+
T Consensus       119 -------~~~fDlV~~DPPy~~-g~~~~~l~~l~~~--~~l~~~~iv~ve~~~~~~  164 (199)
T PRK10909        119 -------GTPHNVVFVDPPFRK-GLLEETINLLEDN--GWLADEALIYVESEVENG  164 (199)
T ss_pred             -------CCCceEEEECCCCCC-ChHHHHHHHHHHC--CCcCCCcEEEEEecCCCC
Confidence                   124999999999643 222222 223322  122356788887766543

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=4.9e-14  Score=121.07  Aligned_cols=86  Identities=30%  Similarity=0.341  Sum_probs=74.4

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .|.+|+|+|||||.+|+.++..|+ +|+|+|++++|++.+++|+..+.    +++.|+++|+.++-.             
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~----g~v~f~~~dv~~~~~-------------  107 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL----GDVEFVVADVSDFRG-------------  107 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC----CceEEEEcchhhcCC-------------
Confidence            688999999999999999999987 99999999999999999999854    379999999998633             


Q ss_pred             CCCCCCCCcccEEEECChhhhH------HHHHHHhccc
Q psy16898        241 EGNSTGGTAVARVIMNLPATAV------EYVRYLKVLT  272 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP~~a~------~~l~~~~~l~  272 (324)
                              .+|.+|||||-.+.      .|++.+....
T Consensus       108 --------~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s  137 (198)
T COG2263         108 --------KFDTVIMNPPFGSQRRHADRPFLLKALEIS  137 (198)
T ss_pred             --------ccceEEECCCCccccccCCHHHHHHHHHhh
Confidence                    49999999998653      5777776543

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.56  E-value=1.9e-14  Score=125.53  Aligned_cols=114  Identities=24%  Similarity=0.324  Sum_probs=79.8

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      -+|.+|||||||+|.+|++++.+|| +|+.||.|+.+++.+++|++.-+  +.++++++++|+..++.+....       
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~--~~~~~~v~~~d~~~~l~~~~~~-------  111 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLG--LEDKIRVIKGDAFKFLLKLAKK-------  111 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEESSHHHHHHHHHHC-------
T ss_pred             cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhC--CCcceeeeccCHHHHHHhhccc-------
Confidence            4789999999999999999999998 99999999999999999999988  8767999999999988765331       


Q ss_pred             cCCCCCCCCcccEEEECChhhhHHH-HHHHhccchhhcCCCCCCCEEEEEEccc
Q psy16898        240 SEGNSTGGTAVARVIMNLPATAVEY-VRYLKVLTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a~~~-l~~~~~l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                             ...||.|++|||+..... .+.+..+...  ..+.+++++.+-.-.+
T Consensus       112 -------~~~fDiIflDPPY~~~~~~~~~l~~l~~~--~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  112 -------GEKFDIIFLDPPYAKGLYYEELLELLAEN--NLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             -------TS-EEEEEE--STTSCHHHHHHHHHHHHT--TSEEEEEEEEEEEETT
T ss_pred             -------CCCceEEEECCCcccchHHHHHHHHHHHC--CCCCCCEEEEEEecCC
Confidence                   356999999999964332 2222222211  1222346666655555

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.53  E-value=1.3e-13  Score=128.43  Aligned_cols=107  Identities=22%  Similarity=0.236  Sum_probs=83.2

Q ss_pred             CCeEEEEeccceeecCcChHHHHH--HHh-hc--cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHH
Q psy16898        132 NGCTFKMDFSKVYWNSRLSTEHER--VTK-EV--REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASI  204 (324)
Q Consensus       132 ~g~~f~id~~~~f~~~r~~~e~~~--~~~-~~--~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~  204 (324)
                      .|+.|.+++..|+  +|..+|...  .+. .+  .++.+|||+|||+|.+++.+++.  +++|+|+|+|+.|++.|++|+
T Consensus        88 ~g~~f~v~~~vli--pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~  165 (284)
T TIGR03533        88 AGLEFYVDERVLI--PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINI  165 (284)
T ss_pred             cCcEEEECCCCcc--CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            5788999886554  444444321  222 23  34579999999999999999985  569999999999999999999


Q ss_pred             HHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh
Q psy16898        205 RLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       205 ~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                      +.|+  +.++++++++|+.+.+.                   ...||.|++|||+..
T Consensus       166 ~~~~--~~~~i~~~~~D~~~~~~-------------------~~~fD~Iv~NPPy~~  201 (284)
T TIGR03533       166 ERHG--LEDRVTLIQSDLFAALP-------------------GRKYDLIVSNPPYVD  201 (284)
T ss_pred             HHcC--CCCcEEEEECchhhccC-------------------CCCccEEEECCCCCC
Confidence            9999  87689999999865331                   124999999999854

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.51  E-value=3.4e-13  Score=123.42  Aligned_cols=106  Identities=21%  Similarity=0.196  Sum_probs=80.3

Q ss_pred             CCeEEEEeccceeecCcChHHHHH--HHhhcc---CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHH
Q psy16898        132 NGCTFKMDFSKVYWNSRLSTEHER--VTKEVR---EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASI  204 (324)
Q Consensus       132 ~g~~f~id~~~~f~~~r~~~e~~~--~~~~~~---~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~  204 (324)
                      .|++|.+++..| + |+-.+|...  ++..+.   .+.+|||+|||+|.+++.+++.  +.+|+|+|+|+.|++.|++|+
T Consensus        53 ~g~~~~v~~~vf-~-pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~  130 (251)
T TIGR03704        53 CGLRIAVDPGVF-V-PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNL  130 (251)
T ss_pred             cCeEEEECCCCc-C-CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence            688899998754 4 555665542  223332   2458999999999999999874  569999999999999999999


Q ss_pred             HHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh
Q psy16898        205 RLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       205 ~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                      +.|+  .    +++++|+.+.+....                ...||.||+|||+..
T Consensus       131 ~~~~--~----~~~~~D~~~~l~~~~----------------~~~fDlVv~NPPy~~  165 (251)
T TIGR03704       131 ADAG--G----TVHEGDLYDALPTAL----------------RGRVDILAANAPYVP  165 (251)
T ss_pred             HHcC--C----EEEEeechhhcchhc----------------CCCEeEEEECCCCCC
Confidence            9887  3    688999877543211                134999999999864

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.50  E-value=1.9e-13  Score=117.79  Aligned_cols=77  Identities=29%  Similarity=0.416  Sum_probs=65.0

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGA--IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~--~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      ++.+|||+|||+|.+++.+++++.  +|+++|+|+.|++.+++|++.|+  +.+ +++++.|..+...            
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~--~~~-v~~~~~d~~~~~~------------   95 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG--LEN-VEVVQSDLFEALP------------   95 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT--CTT-EEEEESSTTTTCC------------
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC--ccc-ccccccccccccc------------
Confidence            678999999999999999999754  69999999999999999999999  874 9999999876433            


Q ss_pred             cCCCCCCCCcccEEEECChhh
Q psy16898        240 SEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~  260 (324)
                             ..+||.|++|||..
T Consensus        96 -------~~~fD~Iv~NPP~~  109 (170)
T PF05175_consen   96 -------DGKFDLIVSNPPFH  109 (170)
T ss_dssp             -------TTCEEEEEE---SB
T ss_pred             -------ccceeEEEEccchh
Confidence                   14599999999973

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.49  E-value=1.3e-13  Score=124.50  Aligned_cols=82  Identities=22%  Similarity=0.332  Sum_probs=73.7

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR-G-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~-g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      ...+|||+|||+|.+++.+|++ . ++|++||+.+++++.|++|++.|+  +.++++++++|+.++.+....        
T Consensus        44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~--l~~ri~v~~~Di~~~~~~~~~--------  113 (248)
T COG4123          44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP--LEERIQVIEADIKEFLKALVF--------  113 (248)
T ss_pred             cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc--chhceeEehhhHHHhhhcccc--------
Confidence            4779999999999999999997 4 699999999999999999999999  999999999999998776432        


Q ss_pred             cCCCCCCCCcccEEEECChhhh
Q psy16898        240 SEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                              .+||+||||||+..
T Consensus       114 --------~~fD~Ii~NPPyf~  127 (248)
T COG4123         114 --------ASFDLIICNPPYFK  127 (248)
T ss_pred             --------cccCEEEeCCCCCC
Confidence                    35999999999963

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.48  E-value=3.8e-13  Score=116.33  Aligned_cols=113  Identities=20%  Similarity=0.221  Sum_probs=87.1

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      -.|.++||+|||+|.++++++.+|+ +|+.||.|..++..+++|++.-+  +..+++++.+|+..++.....        
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~--~~~~~~~~~~da~~~L~~~~~--------  111 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALG--LEGEARVLRNDALRALKQLGT--------  111 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC--CccceEEEeecHHHHHHhcCC--------
Confidence            4688999999999999999999998 99999999999999999999888  777899999999977765422        


Q ss_pred             cCCCCCCCCcccEEEECChhhhHHHHHHHhc---cchhhcCCCCCCCEEEEEEcccC
Q psy16898        240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKV---LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~---l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                             ...||.|.+|||+. ..+++....   +...  +.+++++++.|-.=...
T Consensus       112 -------~~~FDlVflDPPy~-~~l~~~~~~~~~~~~~--~~L~~~~~iv~E~~~~~  158 (187)
T COG0742         112 -------REPFDLVFLDPPYA-KGLLDKELALLLLEEN--GWLKPGALIVVEHDKDV  158 (187)
T ss_pred             -------CCcccEEEeCCCCc-cchhhHHHHHHHHHhc--CCcCCCcEEEEEeCCCc
Confidence                   12499999999995 444432222   2222  13456677777655543

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.47  E-value=6.2e-13  Score=125.09  Aligned_cols=107  Identities=21%  Similarity=0.208  Sum_probs=83.1

Q ss_pred             CCeEEEEeccceeecCcChHHHHH--HHh-hccC-C-CEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHH
Q psy16898        132 NGCTFKMDFSKVYWNSRLSTEHER--VTK-EVRE-G-DLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASI  204 (324)
Q Consensus       132 ~g~~f~id~~~~f~~~r~~~e~~~--~~~-~~~~-g-~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~  204 (324)
                      .|+.|.+++.. |+ +|..+|...  .+. .+.. + .+|||+|||+|.+++.+++.  +++|+|+|+|+.|++.|++|+
T Consensus       100 ~g~~f~v~~~v-li-pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~  177 (307)
T PRK11805        100 CGLEFYVDERV-LV-PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINI  177 (307)
T ss_pred             cCcEEEECCCC-cC-CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence            57889998865 44 555444331  222 2332 2 68999999999999999985  569999999999999999999


Q ss_pred             HHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh
Q psy16898        205 RLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       205 ~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                      +.++  +.++++++++|+.+.+..                   ..||.|++|||+..
T Consensus       178 ~~~~--l~~~i~~~~~D~~~~l~~-------------------~~fDlIvsNPPyi~  213 (307)
T PRK11805        178 ERHG--LEDRVTLIESDLFAALPG-------------------RRYDLIVSNPPYVD  213 (307)
T ss_pred             HHhC--CCCcEEEEECchhhhCCC-------------------CCccEEEECCCCCC
Confidence            9999  876799999998764321                   24999999999964

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.46  E-value=7.8e-13  Score=105.17  Aligned_cols=93  Identities=25%  Similarity=0.256  Sum_probs=73.5

Q ss_pred             CCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      ||.+|||+|||+|.+++.+++  .+++|+|+|+|+.+++.|++|+...+  ..++++++++|+ ......          
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~-~~~~~~----------   67 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG--LSDRITFVQGDA-EFDPDF----------   67 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT--TTTTEEEEESCC-HGGTTT----------
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECcc-ccCccc----------
Confidence            578999999999999999999  78899999999999999999997777  777999999999 322211          


Q ss_pred             cCCCCCCCCcccEEEECC-hh-------hhHHHHHHHhc-cchh
Q psy16898        240 SEGNSTGGTAVARVIMNL-PA-------TAVEYVRYLKV-LTRE  274 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~np-P~-------~a~~~l~~~~~-l~~~  274 (324)
                             ...||.|+++. ..       ....+++.+.. |+++
T Consensus        68 -------~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg  104 (112)
T PF12847_consen   68 -------LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPG  104 (112)
T ss_dssp             -------SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEE
T ss_pred             -------CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCC
Confidence                   24599999977 11       12245666665 6665

...

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=3.8e-13  Score=124.87  Aligned_cols=108  Identities=26%  Similarity=0.285  Sum_probs=81.9

Q ss_pred             eCCeEEEEeccceeecCcChHHHHH--HHhhccCCC-EEEEEcCCCchhHHHHHhcCC--EEEEEeCCHHHHHHHHHHHH
Q psy16898        131 ENGCTFKMDFSKVYWNSRLSTEHER--VTKEVREGD-LVLDVFAGVGPFSIPAARRGA--IVAANDLNPDSYAWLQASIR  205 (324)
Q Consensus       131 e~g~~f~id~~~~f~~~r~~~e~~~--~~~~~~~g~-~VLDl~~G~G~~al~~a~~g~--~V~avD~~~~a~~~a~~N~~  205 (324)
                      -.|+.|.++..-  +-||..+|...  ++....... +|||+|||+|.+++.+|+.+.  .|+|+|+|+.|++.|++|++
T Consensus        78 f~gl~~~v~~~v--liPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~  155 (280)
T COG2890          78 FGGLRFKVDEGV--LIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAE  155 (280)
T ss_pred             ecceeeeeCCCc--eecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHH
Confidence            367777777654  34666666542  222233333 799999999999999999654  99999999999999999999


Q ss_pred             HhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHH
Q psy16898        206 LNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVE  263 (324)
Q Consensus       206 ~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~  263 (324)
                      .|+  + .++.++.+|.++-+.                    .+||.||+|||+...+
T Consensus       156 ~~~--l-~~~~~~~~dlf~~~~--------------------~~fDlIVsNPPYip~~  190 (280)
T COG2890         156 RNG--L-VRVLVVQSDLFEPLR--------------------GKFDLIVSNPPYIPAE  190 (280)
T ss_pred             HcC--C-ccEEEEeeecccccC--------------------CceeEEEeCCCCCCCc
Confidence            999  8 477788777765433                    2599999999996543

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.44  E-value=3.4e-12  Score=110.74  Aligned_cols=124  Identities=20%  Similarity=0.216  Sum_probs=89.3

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .++++|||+|||+|.+++.+++.+.+|+++|+|+.+++.+++|++.|+  +  +++++++|+.+...             
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~--~~~~~~~d~~~~~~-------------   80 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNN--V--GLDVVMTDLFKGVR-------------   80 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcC--C--ceEEEEcccccccC-------------
Confidence            366799999999999999999988899999999999999999999988  6  48999999865321             


Q ss_pred             CCCCCCCCcccEEEECChhhhH-------------------------HHHHHHhccchhhcCCCCCCCEEEEEEcccCCC
Q psy16898        241 EGNSTGGTAVARVIMNLPATAV-------------------------EYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMD  295 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP~~a~-------------------------~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~  295 (324)
                             ..||.|++|||....                         .+++.+..       .++++|.+.+...+....
T Consensus        81 -------~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~Lk~gG~~~~~~~~~~~~  146 (179)
T TIGR00537        81 -------GKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPE-------ILKEGGRVQLIQSSLNGE  146 (179)
T ss_pred             -------CcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHH-------hhCCCCEEEEEEeccCCh
Confidence                   249999999997311                         12222222       344568887766665555


Q ss_pred             hhHHhHhhhcCCCceEEEEeec
Q psy16898        296 LETKKKIKSYDPSYATLIRGIR  317 (324)
Q Consensus       296 ~~~~~~v~~y~~~~~~~i~~~~  317 (324)
                      .+..+..+..  +....+..-.
T Consensus       147 ~~~~~~l~~~--gf~~~~~~~~  166 (179)
T TIGR00537       147 PDTFDKLDER--GFRYEIVAER  166 (179)
T ss_pred             HHHHHHHHhC--CCeEEEEEEe
Confidence            5555555443  3444444433

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK14967 putative methyltransferase; Provisional

Probab=99.41  E-value=8.6e-12  Score=112.08  Aligned_cols=78  Identities=24%  Similarity=0.292  Sum_probs=67.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.++.+|||+|||+|.+++.+++.++ +|+++|+|+.+++.+++|+..++  +  +++++++|+.+...           
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~--~--~~~~~~~d~~~~~~-----------   98 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG--V--DVDVRRGDWARAVE-----------   98 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC--C--eeEEEECchhhhcc-----------
Confidence            46788999999999999999999776 99999999999999999999998  6  48899999876432           


Q ss_pred             ccCCCCCCCCcccEEEECChhh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                              ...||.|++|||+.
T Consensus        99 --------~~~fD~Vi~npPy~  112 (223)
T PRK14967         99 --------FRPFDVVVSNPPYV  112 (223)
T ss_pred             --------CCCeeEEEECCCCC
Confidence                    13499999999974

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.41  E-value=1.4e-12  Score=126.02  Aligned_cols=107  Identities=20%  Similarity=0.166  Sum_probs=84.5

Q ss_pred             eCCeEEEEeccceeecCcChHHHHH--HHhhccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHH
Q psy16898        131 ENGCTFKMDFSKVYWNSRLSTEHER--VTKEVREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRL  206 (324)
Q Consensus       131 e~g~~f~id~~~~f~~~r~~~e~~~--~~~~~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~  206 (324)
                      -.|..|.+++..+.  ||..+|...  +++.+.++.+|||+|||+|.+++.+++.  +++|+|+|+|+.|++.|++|++.
T Consensus       220 F~G~~f~V~p~vLI--PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~  297 (423)
T PRK14966        220 FYGRRFAVNPNVLI--PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAAD  297 (423)
T ss_pred             ecCcEEEeCCCccC--CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            37889999887543  676666542  3445667789999999999999998863  56999999999999999999998


Q ss_pred             hCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        207 NERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       207 n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      ++  .  +++++++|+.+....  .               ...||.|++|||+.
T Consensus       298 ~g--~--rV~fi~gDl~e~~l~--~---------------~~~FDLIVSNPPYI  330 (423)
T PRK14966        298 LG--A--RVEFAHGSWFDTDMP--S---------------EGKWDIIVSNPPYI  330 (423)
T ss_pred             cC--C--cEEEEEcchhccccc--c---------------CCCccEEEECCCCC
Confidence            88  5  699999998653110  0               12499999999984

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.40  E-value=1.6e-12  Score=121.07  Aligned_cols=108  Identities=21%  Similarity=0.229  Sum_probs=83.7

Q ss_pred             CCeEEEEeccceeecCcChHHHHH--HHhhc--cC-CCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHH
Q psy16898        132 NGCTFKMDFSKVYWNSRLSTEHER--VTKEV--RE-GDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASI  204 (324)
Q Consensus       132 ~g~~f~id~~~~f~~~r~~~e~~~--~~~~~--~~-g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~  204 (324)
                      .|..|.++... |. ||..+|...  ++..+  .. +.+|||+|||+|.+++.+++.  +++|+|+|+|+.|++.|++|+
T Consensus        81 ~g~~f~v~~~v-li-Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~  158 (284)
T TIGR00536        81 YGLEFFVNEHV-LI-PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA  158 (284)
T ss_pred             cCeEEEECCCC-cC-CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            57788888764 33 776666553  22222  22 268999999999999999984  469999999999999999999


Q ss_pred             HHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH
Q psy16898        205 RLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV  262 (324)
Q Consensus       205 ~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~  262 (324)
                      +.++  +.++++++++|+.+.+.                   ...||.|++|||+...
T Consensus       159 ~~~~--~~~~v~~~~~d~~~~~~-------------------~~~fDlIvsNPPyi~~  195 (284)
T TIGR00536       159 EKNQ--LEHRVEFIQSNLFEPLA-------------------GQKIDIIVSNPPYIDE  195 (284)
T ss_pred             HHcC--CCCcEEEEECchhccCc-------------------CCCccEEEECCCCCCc
Confidence            9998  86569999999865321                   1249999999999643

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.40  E-value=2.3e-12  Score=116.21  Aligned_cols=114  Identities=19%  Similarity=0.228  Sum_probs=91.6

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .+|.+|||+|||||.+++.+++..  ++|+++|+|+.|++.|++.+..-+  .. +++++.+||.+++.+.         
T Consensus        50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~--~~-~i~fv~~dAe~LPf~D---------  117 (238)
T COG2226          50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG--VQ-NVEFVVGDAENLPFPD---------  117 (238)
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC--cc-ceEEEEechhhCCCCC---------
Confidence            379999999999999999999964  599999999999999999998766  66 4999999999987542         


Q ss_pred             ccCCCCCCCCcccEEEE-----CChhhhHHHHHHHhccchhhcCCCCCCCEEEEEEcccCCChhHHhHhh
Q psy16898        239 QSEGNSTGGTAVARVIM-----NLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIK  303 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~-----npP~~a~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~  303 (324)
                               ..||+|.+     |.|+....+-+..|-+||+        |.+.|-.|++...+.......
T Consensus       118 ---------~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg--------G~~~vle~~~p~~~~~~~~~~  170 (238)
T COG2226         118 ---------NSFDAVTISFGLRNVTDIDKALKEMYRVLKPG--------GRLLVLEFSKPDNPVLRKAYI  170 (238)
T ss_pred             ---------CccCEEEeeehhhcCCCHHHHHHHHHHhhcCC--------eEEEEEEcCCCCchhhHHHHH
Confidence                     45999988     5665444444444557765        899999999987766655554

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.40  E-value=5.2e-12  Score=116.46  Aligned_cols=81  Identities=20%  Similarity=0.217  Sum_probs=69.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.+|++|||+|||+|..++.+++.   ...|+|+|+++.+++.+++|++.++  +. +++++++|+..+...        
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g--~~-~v~~~~~D~~~~~~~--------  137 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG--VL-NVAVTNFDGRVFGAA--------  137 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC--CC-cEEEecCCHHHhhhh--------
Confidence            568899999999999999999873   3489999999999999999999999  86 799999999875332        


Q ss_pred             hcccCCCCCCCCcccEEEECChhhh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                                ...||.|++|||.+.
T Consensus       138 ----------~~~fD~Vl~D~Pcsg  152 (264)
T TIGR00446       138 ----------VPKFDAILLDAPCSG  152 (264)
T ss_pred             ----------ccCCCEEEEcCCCCC
Confidence                      124999999999764

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.39  E-value=1.8e-12  Score=120.79  Aligned_cols=139  Identities=24%  Similarity=0.263  Sum_probs=98.1

Q ss_pred             CCeEEEEeccceeecCcChHHHHH--HHh-hccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHh
Q psy16898        132 NGCTFKMDFSKVYWNSRLSTEHER--VTK-EVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLN  207 (324)
Q Consensus       132 ~g~~f~id~~~~f~~~r~~~e~~~--~~~-~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n  207 (324)
                      +.+...+|+...|-.-...+-++-  +++ ...+|++|||+|||+|.+|+.+++.|+ +|+|+|++|.|++.|++|++.|
T Consensus       128 ~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N  207 (295)
T PF06325_consen  128 DEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELN  207 (295)
T ss_dssp             TSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHc
Confidence            556678888887766555555542  333 456899999999999999999999998 8999999999999999999999


Q ss_pred             CCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH-HHHHHHhc-cchhhcCCCCCCCEE
Q psy16898        208 ERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV-EYVRYLKV-LTREEFGKLSRPPVL  285 (324)
Q Consensus       208 ~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~-~~l~~~~~-l~~~~~~~~~~~g~v  285 (324)
                      +  +.+++.+.  ...+..                    ..+||.|+.|.-...+ .+.+.+.. ++++        |++
T Consensus       208 ~--~~~~~~v~--~~~~~~--------------------~~~~dlvvANI~~~vL~~l~~~~~~~l~~~--------G~l  255 (295)
T PF06325_consen  208 G--VEDRIEVS--LSEDLV--------------------EGKFDLVVANILADVLLELAPDIASLLKPG--------GYL  255 (295)
T ss_dssp             T---TTCEEES--CTSCTC--------------------CS-EEEEEEES-HHHHHHHHHHCHHHEEEE--------EEE
T ss_pred             C--CCeeEEEE--Eecccc--------------------cccCCEEEECCCHHHHHHHHHHHHHhhCCC--------CEE
Confidence            9  98666542  111111                    1359999999866433 45555555 5554        899


Q ss_pred             EEEEcccCCChhHHhHh
Q psy16898        286 YLYCFLPKMDLETKKKI  302 (324)
Q Consensus       286 h~y~f~~~~~~~~~~~v  302 (324)
                      .+..+.....+...+.+
T Consensus       256 IlSGIl~~~~~~v~~a~  272 (295)
T PF06325_consen  256 ILSGILEEQEDEVIEAY  272 (295)
T ss_dssp             EEEEEEGGGHHHHHHHH
T ss_pred             EEccccHHHHHHHHHHH
Confidence            99988887555444433

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.37  E-value=1e-11  Score=119.54  Aligned_cols=97  Identities=16%  Similarity=0.131  Sum_probs=74.0

Q ss_pred             eeecCcChHHHHHHHhhccC--CCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCC--CCeE
Q psy16898        143 VYWNSRLSTEHERVTKEVRE--GDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVK--TPIS  216 (324)
Q Consensus       143 ~f~~~r~~~e~~~~~~~~~~--g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~--~~v~  216 (324)
                      +|--.++..--+.+++.+..  +.+|||+|||+|.+++.++++  +++|+++|+|+.|++.+++|++.|+  ..  .+++
T Consensus       207 VFs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~--~~~~~~v~  284 (378)
T PRK15001        207 VFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM--PEALDRCE  284 (378)
T ss_pred             ccCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--cccCceEE
Confidence            55444444333345565543  469999999999999999986  4699999999999999999999997  54  2689


Q ss_pred             EEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        217 ATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       217 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      ++.+|+.....                   ..+||.|++|||..
T Consensus       285 ~~~~D~l~~~~-------------------~~~fDlIlsNPPfh  309 (378)
T PRK15001        285 FMINNALSGVE-------------------PFRFNAVLCNPPFH  309 (378)
T ss_pred             EEEccccccCC-------------------CCCEEEEEECcCcc
Confidence            99998764321                   13599999999974

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.36  E-value=3.9e-12  Score=115.15  Aligned_cols=118  Identities=25%  Similarity=0.304  Sum_probs=81.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ..+|.+|||+|||||.++..++++   .++|+|+|+|+.|++.|++.++..+  .. +++++++|+.++....       
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~--~~-~i~~v~~da~~lp~~d-------  114 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG--LQ-NIEFVQGDAEDLPFPD-------  114 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE-BTTB--S-T-------
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC--CC-CeeEEEcCHHHhcCCC-------
Confidence            568899999999999999999884   3599999999999999999999887  66 8999999999875432       


Q ss_pred             hcccCCCCCCCCcccEEEE-----CChhhhHHHHHHHhccchhhcCCCCCCCEEEEEEcccCCChhHHhHhhhcC
Q psy16898        237 WSQSEGNSTGGTAVARVIM-----NLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSYD  306 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~-----npP~~a~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~y~  306 (324)
                                 .+||+|++     |.|+....+-+..+-|+|+        |.+.+-.|++..........+.|.
T Consensus       115 -----------~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPG--------G~l~ile~~~p~~~~~~~~~~~y~  170 (233)
T PF01209_consen  115 -----------NSFDAVTCSFGLRNFPDRERALREMYRVLKPG--------GRLVILEFSKPRNPLLRALYKFYF  170 (233)
T ss_dssp             -----------T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEE--------EEEEEEEEEB-SSHHHHHHHHH--
T ss_pred             -----------CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCC--------eEEEEeeccCCCCchhhceeeeee
Confidence                       35999988     6666444444444558876        999999999988776666655544

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.35  E-value=2.6e-12  Score=109.34  Aligned_cols=86  Identities=24%  Similarity=0.279  Sum_probs=64.7

Q ss_pred             CEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCC
Q psy16898        164 DLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGN  243 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~  243 (324)
                      ++|+|+|||+|+-++.+|+.+.+|+|+|+++..++.|++|++..|  +.++++++++|+.+.+......           
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYG--v~~~I~~i~gD~~~~~~~~~~~-----------   67 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYG--VADNIDFICGDFFELLKRLKSN-----------   67 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB--------------
T ss_pred             CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCCHHHHHhhcccc-----------
Confidence            379999999999999999998899999999999999999999999  8889999999999977654321           


Q ss_pred             CCCCCcccEEEECChhhhHHHHH
Q psy16898        244 STGGTAVARVIMNLPATAVEYVR  266 (324)
Q Consensus       244 ~~~~~~fD~Vi~npP~~a~~~l~  266 (324)
                          ..+|.|+++||=...++..
T Consensus        68 ----~~~D~vFlSPPWGGp~Y~~   86 (163)
T PF09445_consen   68 ----KIFDVVFLSPPWGGPSYSK   86 (163)
T ss_dssp             -------SEEEE---BSSGGGGG
T ss_pred             ----ccccEEEECCCCCCccccc
Confidence                1289999999987654443

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.35  E-value=1.6e-11  Score=114.60  Aligned_cols=137  Identities=18%  Similarity=0.140  Sum_probs=97.9

Q ss_pred             eCCeEEEEeccceeecCcChHHHH--HHHh-hccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHH
Q psy16898        131 ENGCTFKMDFSKVYWNSRLSTEHE--RVTK-EVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRL  206 (324)
Q Consensus       131 e~g~~f~id~~~~f~~~r~~~e~~--~~~~-~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~  206 (324)
                      .+.....+|+...|-.-...+.+.  .++. ...++++|||+|||+|.+++.+++.|+ +|+|+|+++.|++.|++|+..
T Consensus       125 ~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~  204 (288)
T TIGR00406       125 EDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL  204 (288)
T ss_pred             CCcEEEEECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH
Confidence            456778888888775443333332  2232 345789999999999999999999876 999999999999999999999


Q ss_pred             hCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh-HHHHHHHhc-cchhhcCCCCCCCE
Q psy16898        207 NERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA-VEYVRYLKV-LTREEFGKLSRPPV  284 (324)
Q Consensus       207 n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a-~~~l~~~~~-l~~~~~~~~~~~g~  284 (324)
                      |+  +.+++.+..+|.....                    ...||.|++|+.... ..++..+.. ++        ++|+
T Consensus       205 n~--~~~~~~~~~~~~~~~~--------------------~~~fDlVvan~~~~~l~~ll~~~~~~Lk--------pgG~  254 (288)
T TIGR00406       205 NQ--VSDRLQVKLIYLEQPI--------------------EGKADVIVANILAEVIKELYPQFSRLVK--------PGGW  254 (288)
T ss_pred             cC--CCcceEEEeccccccc--------------------CCCceEEEEecCHHHHHHHHHHHHHHcC--------CCcE
Confidence            99  8767777777632211                    135999999975432 234444444 44        4599


Q ss_pred             EEEEEcccCCChh
Q psy16898        285 LYLYCFLPKMDLE  297 (324)
Q Consensus       285 vh~y~f~~~~~~~  297 (324)
                      +.+..+......+
T Consensus       255 li~sgi~~~~~~~  267 (288)
T TIGR00406       255 LILSGILETQAQS  267 (288)
T ss_pred             EEEEeCcHhHHHH
Confidence            9888876554333

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.35  E-value=6.8e-12  Score=119.24  Aligned_cols=81  Identities=27%  Similarity=0.335  Sum_probs=70.8

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .+++|++|||+|||+|++++.++..|+.|+|+|+|+.|++.++.|++.++  +. ++.++++|+.++...          
T Consensus       179 ~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g--~~-~i~~~~~D~~~l~~~----------  245 (329)
T TIGR01177       179 RVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYG--IE-DFFVKRGDATKLPLS----------  245 (329)
T ss_pred             CCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhC--CC-CCeEEecchhcCCcc----------
Confidence            35688999999999999999999999999999999999999999999999  87 489999999875321          


Q ss_pred             ccCCCCCCCCcccEEEECChhh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                              ...||.|++|||+.
T Consensus       246 --------~~~~D~Iv~dPPyg  259 (329)
T TIGR01177       246 --------SESVDAIATDPPYG  259 (329)
T ss_pred             --------cCCCCEEEECCCCc
Confidence                    13599999999984

This family is found exclusively in the Archaea.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.34  E-value=2.3e-11  Score=106.05  Aligned_cols=113  Identities=17%  Similarity=0.112  Sum_probs=81.8

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      ++.+|||+|||+|.+++.++..  +++|+|+|.|+.+++.+++|++.++  +. +++++++|+.++..            
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~--~~-~i~~i~~d~~~~~~------------  106 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG--LN-NVEIVNGRAEDFQH------------  106 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC--CC-CeEEEecchhhccc------------
Confidence            4889999999999999998874  3589999999999999999999998  86 69999999987521            


Q ss_pred             cCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhHhhhc
Q psy16898        240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSY  305 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~y  305 (324)
                             ...||.|+++.-.....+++.+.. |++        +|.+.++ +......+.....+++
T Consensus       107 -------~~~fD~I~s~~~~~~~~~~~~~~~~Lkp--------gG~lvi~-~~~~~~~~~~~~~e~~  157 (181)
T TIGR00138       107 -------EEQFDVITSRALASLNVLLELTLNLLKV--------GGYFLAY-KGKKYLDEIEEAKRKC  157 (181)
T ss_pred             -------cCCccEEEehhhhCHHHHHHHHHHhcCC--------CCEEEEE-cCCCcHHHHHHHHHhh
Confidence                   135999999851112234444443 444        5777655 3444444444444443

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=1.8e-11  Score=113.49  Aligned_cols=134  Identities=23%  Similarity=0.255  Sum_probs=92.7

Q ss_pred             CCeEEEEeccceeecCcChHHHH--HHHh-hccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHh
Q psy16898        132 NGCTFKMDFSKVYWNSRLSTEHE--RVTK-EVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLN  207 (324)
Q Consensus       132 ~g~~f~id~~~~f~~~r~~~e~~--~~~~-~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n  207 (324)
                      +-+..++|++-.|-.-...+-++  .+++ ...+|.+|||+|||+|.+|+.+++.|+ +|+|+|++|.|++.+++|+++|
T Consensus       129 ~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N  208 (300)
T COG2264         129 DELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLN  208 (300)
T ss_pred             CceEEEEccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHc
Confidence            46778888887664333333332  2333 466899999999999999999999998 7999999999999999999999


Q ss_pred             CCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh-HHHHHHHhc-cchhhcCCCCCCCEE
Q psy16898        208 ERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA-VEYVRYLKV-LTREEFGKLSRPPVL  285 (324)
Q Consensus       208 ~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a-~~~l~~~~~-l~~~~~~~~~~~g~v  285 (324)
                      +  +...++.-..+..+.+.                   ...||+||.|.=+.. ..+.+.+.. +++        +|++
T Consensus       209 ~--v~~~~~~~~~~~~~~~~-------------------~~~~DvIVANILA~vl~~La~~~~~~lkp--------gg~l  259 (300)
T COG2264         209 G--VELLVQAKGFLLLEVPE-------------------NGPFDVIVANILAEVLVELAPDIKRLLKP--------GGRL  259 (300)
T ss_pred             C--Cchhhhcccccchhhcc-------------------cCcccEEEehhhHHHHHHHHHHHHHHcCC--------CceE
Confidence            9  86312222222222111                   246999999974432 235555544 444        5888


Q ss_pred             EEEEcccCC
Q psy16898        286 YLYCFLPKM  294 (324)
Q Consensus       286 h~y~f~~~~  294 (324)
                      ....+....
T Consensus       260 IlSGIl~~q  268 (300)
T COG2264         260 ILSGILEDQ  268 (300)
T ss_pred             EEEeehHhH
Confidence            888766654

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.33  E-value=2.5e-11  Score=119.36  Aligned_cols=84  Identities=19%  Similarity=0.256  Sum_probs=71.0

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      .+.+|.+|||+|||+|+.++.++..   +.+|+|+|+++.+++.+++|++..+  +. +++++++|+.++....      
T Consensus       234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g--~~-~v~~~~~Da~~l~~~~------  304 (431)
T PRK14903        234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK--LS-SIEIKIADAERLTEYV------  304 (431)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC--CC-eEEEEECchhhhhhhh------
Confidence            3568999999999999999999884   4599999999999999999999999  86 6999999998764221      


Q ss_pred             hhcccCCCCCCCCcccEEEECChhhhH
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLPATAV  262 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP~~a~  262 (324)
                                 ...||.|++|+|.++.
T Consensus       305 -----------~~~fD~Vl~DaPCsg~  320 (431)
T PRK14903        305 -----------QDTFDRILVDAPCTSL  320 (431)
T ss_pred             -----------hccCCEEEECCCCCCC
Confidence                       1349999999999543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.33  E-value=7.5e-12  Score=125.27  Aligned_cols=108  Identities=18%  Similarity=0.086  Sum_probs=85.3

Q ss_pred             eCCeEEEEeccceeecCcChHHHHH--HHhhcc--------------------------CCCEEEEEcCCCchhHHHHHh
Q psy16898        131 ENGCTFKMDFSKVYWNSRLSTEHER--VTKEVR--------------------------EGDLVLDVFAGVGPFSIPAAR  182 (324)
Q Consensus       131 e~g~~f~id~~~~f~~~r~~~e~~~--~~~~~~--------------------------~g~~VLDl~~G~G~~al~~a~  182 (324)
                      -.|+.|.+++.-  +.||..+|...  +++.+.                          ++.+|||+|||+|.+++.+++
T Consensus        81 F~g~~f~V~~~V--LIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~  158 (506)
T PRK01544         81 FYSREFIVNKHV--LIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLC  158 (506)
T ss_pred             EcCcEEEeCCCc--ccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHH
Confidence            368888888764  56888777653  222221                          346899999999999999887


Q ss_pred             c--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        183 R--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       183 ~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      .  +++|+|+|+|+.|++.|++|++.++  +.++++++++|+.+.+.                   ...||.|++|||+.
T Consensus       159 ~~p~~~v~avDis~~al~~A~~N~~~~~--l~~~v~~~~~D~~~~~~-------------------~~~fDlIvsNPPYi  217 (506)
T PRK01544        159 ELPNANVIATDISLDAIEVAKSNAIKYE--VTDRIQIIHSNWFENIE-------------------KQKFDFIVSNPPYI  217 (506)
T ss_pred             HCCCCeEEEEECCHHHHHHHHHHHHHcC--CccceeeeecchhhhCc-------------------CCCccEEEECCCCC
Confidence            3  5699999999999999999999998  87789999999865321                   13499999999986


Q ss_pred             h
Q psy16898        261 A  261 (324)
Q Consensus       261 a  261 (324)
                      .
T Consensus       218 ~  218 (506)
T PRK01544        218 S  218 (506)
T ss_pred             C
Confidence            4

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.32  E-value=2.4e-11  Score=110.31  Aligned_cols=106  Identities=23%  Similarity=0.257  Sum_probs=78.7

Q ss_pred             CCeEEEEeccceeecCcChHHHH--HHHhhcc-CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHH
Q psy16898        132 NGCTFKMDFSKVYWNSRLSTEHE--RVTKEVR-EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRL  206 (324)
Q Consensus       132 ~g~~f~id~~~~f~~~r~~~e~~--~~~~~~~-~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~  206 (324)
                      .|..|.++...+  .++..++..  .+++.+. .+.+|||+|||+|.+++.+++.  ++.|+|+|+++.+++.+++|+..
T Consensus        56 ~~~~~~~~~~~~--~p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~  133 (251)
T TIGR03534        56 YGLDFKVSPGVL--IPRPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAAR  133 (251)
T ss_pred             eceEEEECCCcc--cCCCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            344566554433  233333332  2334443 4459999999999999999985  56999999999999999999999


Q ss_pred             hCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh
Q psy16898        207 NERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       207 n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                      ++  +. ++.++++|+.+...                   ...||.|++|||+..
T Consensus       134 ~~--~~-~~~~~~~d~~~~~~-------------------~~~fD~Vi~npPy~~  166 (251)
T TIGR03534       134 LG--LD-NVTFLQSDWFEPLP-------------------GGKFDLIVSNPPYIP  166 (251)
T ss_pred             cC--CC-eEEEEECchhccCc-------------------CCceeEEEECCCCCc
Confidence            98  86 79999999876321                   135999999999864

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.31  E-value=1.7e-11  Score=113.41  Aligned_cols=120  Identities=23%  Similarity=0.277  Sum_probs=82.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +++|++|||+|||.|.+++.+|++ |++|+|+.+|++..+.+++.++..+  +.+++++..+|.+++..           
T Consensus        60 l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~g--l~~~v~v~~~D~~~~~~-----------  126 (273)
T PF02353_consen   60 LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAG--LEDRVEVRLQDYRDLPG-----------  126 (273)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCST--SSSTEEEEES-GGG--------------
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEeeccccCC-----------
Confidence            679999999999999999999997 9999999999999999999999988  98899999999887533           


Q ss_pred             ccCCCCCCCCcccEEEEC-----C-hhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHH------hHhhhc
Q psy16898        239 QSEGNSTGGTAVARVIMN-----L-PATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETK------KKIKSY  305 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~n-----p-P~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~------~~v~~y  305 (324)
                                .||.||+=     . +..-..|+..+.. |+|+        |.+.++.++........      .++.+|
T Consensus       127 ----------~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg--------G~~~lq~i~~~~~~~~~~~~~~~~~i~ky  188 (273)
T PF02353_consen  127 ----------KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG--------GRLVLQTITHRDPPYHAERRSSSDFIRKY  188 (273)
T ss_dssp             ----------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT--------EEEEEEEEEE--HHHHHCTTCCCHHHHHH
T ss_pred             ----------CCCEEEEEechhhcChhHHHHHHHHHHHhcCCC--------cEEEEEecccccccchhhcCCCceEEEEe
Confidence                      39998872     2 1222356666666 7765        77777766665433222      567666


Q ss_pred             -CCCce
Q psy16898        306 -DPSYA  310 (324)
Q Consensus       306 -~~~~~  310 (324)
                       .|+..
T Consensus       189 iFPgg~  194 (273)
T PF02353_consen  189 IFPGGY  194 (273)
T ss_dssp             TSTTS-
T ss_pred             eCCCCC
Confidence             56655

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.31  E-value=1.4e-11  Score=113.31  Aligned_cols=120  Identities=19%  Similarity=0.243  Sum_probs=90.6

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +++|++|||+|||.|.+++.+|++ |++|+|+++|+++.+.+++.++.-|  +.+++++...|-+++..           
T Consensus        70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~g--l~~~v~v~l~d~rd~~e-----------  136 (283)
T COG2230          70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARG--LEDNVEVRLQDYRDFEE-----------  136 (283)
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcC--CCcccEEEecccccccc-----------
Confidence            679999999999999999999996 8999999999999999999999999  88899999999887643           


Q ss_pred             ccCCCCCCCCcccEEEECC--hhh----hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCCh--hHHhHhhhc-CCC
Q psy16898        239 QSEGNSTGGTAVARVIMNL--PAT----AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDL--ETKKKIKSY-DPS  308 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~np--P~~----a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~--~~~~~v~~y-~~~  308 (324)
                                .||.||+==  -..    -..|+..+.. |++        +|.+..+++.....+  ....++.+| .|+
T Consensus       137 ----------~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~--------~G~~llh~I~~~~~~~~~~~~~i~~yiFPg  198 (283)
T COG2230         137 ----------PFDRIVSVGMFEHVGKENYDDFFKKVYALLKP--------GGRMLLHSITGPDQEFRRFPDFIDKYIFPG  198 (283)
T ss_pred             ----------ccceeeehhhHHHhCcccHHHHHHHHHhhcCC--------CceEEEEEecCCCcccccchHHHHHhCCCC
Confidence                      288887620  001    1125555544 444        588887877765432  455666554 465


Q ss_pred             ce
Q psy16898        309 YA  310 (324)
Q Consensus       309 ~~  310 (324)
                      ..
T Consensus       199 G~  200 (283)
T COG2230         199 GE  200 (283)
T ss_pred             Cc
Confidence            54

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.31  E-value=2.1e-11  Score=106.70  Aligned_cols=105  Identities=21%  Similarity=0.111  Sum_probs=81.1

Q ss_pred             HhhccCCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898        157 TKEVREGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       157 ~~~~~~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      ...++++.+|||+|||+|.+++.+++  .+++|+|+|.|+.+++.|++|++.++  ++ +++++++|+.++..       
T Consensus        40 ~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~--l~-~i~~~~~d~~~~~~-------  109 (187)
T PRK00107         40 APYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG--LK-NVTVVHGRAEEFGQ-------  109 (187)
T ss_pred             HhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC--CC-CEEEEeccHhhCCC-------
Confidence            34466789999999999999999886  46799999999999999999999999  87 59999999987432       


Q ss_pred             hhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                                  ...||.|+++-=.....++..+.. +++        +|.+.+..+.
T Consensus       110 ------------~~~fDlV~~~~~~~~~~~l~~~~~~Lkp--------GG~lv~~~~~  147 (187)
T PRK00107        110 ------------EEKFDVVTSRAVASLSDLVELCLPLLKP--------GGRFLALKGR  147 (187)
T ss_pred             ------------CCCccEEEEccccCHHHHHHHHHHhcCC--------CeEEEEEeCC
Confidence                        134999999742222346665554 555        4887766544

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.31  E-value=6.6e-11  Score=104.39  Aligned_cols=116  Identities=16%  Similarity=0.168  Sum_probs=84.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.++.+|||+|||+|.+++.+++.   +.+|+++|+++.+++.+++|++.++  +.++++++++|+.+++...       
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g--~~~~v~~~~~d~~~~l~~~-------  108 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG--VLNNIVLIKGEAPEILFTI-------  108 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC--CCCCeEEEEechhhhHhhc-------
Confidence            558899999999999999999873   3599999999999999999999998  7668999999998765431       


Q ss_pred             hcccCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhHh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKI  302 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v  302 (324)
                                ...||.|+++.... ...+++.+.. +++        +|.+.++...........+..
T Consensus       109 ----------~~~~D~V~~~~~~~~~~~~l~~~~~~Lkp--------gG~lv~~~~~~~~~~~~~~~l  158 (198)
T PRK00377        109 ----------NEKFDRIFIGGGSEKLKEIISASWEIIKK--------GGRIVIDAILLETVNNALSAL  158 (198)
T ss_pred             ----------CCCCCEEEECCCcccHHHHHHHHHHHcCC--------CcEEEEEeecHHHHHHHHHHH
Confidence                      13499999975321 2345555544 554        588876554333333333333

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.31  E-value=5.5e-11  Score=113.46  Aligned_cols=132  Identities=16%  Similarity=0.064  Sum_probs=91.3

Q ss_pred             EEeCCeEEEEeccceeecCcChHHHHHHHhhcc--CCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHH
Q psy16898        129 HKENGCTFKMDFSKVYWNSRLSTEHERVTKEVR--EGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASI  204 (324)
Q Consensus       129 ~~e~g~~f~id~~~~f~~~r~~~e~~~~~~~~~--~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~  204 (324)
                      +...++.+...+.-|+++.--.. -..+++.+.  ...+|||+|||+|.+++.+++++  .+|+++|+|+.|++.+++|+
T Consensus       162 y~~~~l~i~~~pgvFs~~~lD~g-t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl  240 (342)
T PRK09489        162 YQVDGLTVKTLPGVFSRDGLDVG-SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATL  240 (342)
T ss_pred             eecCCEEEEeCCCCCCCCCCCHH-HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence            33456677766665555443222 123444333  34589999999999999999863  59999999999999999999


Q ss_pred             HHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh---------HHHHHHHhc-cchh
Q psy16898        205 RLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA---------VEYVRYLKV-LTRE  274 (324)
Q Consensus       205 ~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a---------~~~l~~~~~-l~~~  274 (324)
                      +.|+  +.  .+++.+|+....                    ...||.||+|||...         ..++..+.. |++ 
T Consensus       241 ~~n~--l~--~~~~~~D~~~~~--------------------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp-  295 (342)
T PRK09489        241 AANG--LE--GEVFASNVFSDI--------------------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNS-  295 (342)
T ss_pred             HHcC--CC--CEEEEccccccc--------------------CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCc-
Confidence            9999  75  577888875421                    134999999999632         345544444 554 


Q ss_pred             hcCCCCCCCEEEEEEcccC
Q psy16898        275 EFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       275 ~~~~~~~~g~vh~y~f~~~  293 (324)
                             +|.+.+.....-
T Consensus       296 -------gG~L~iVan~~l  307 (342)
T PRK09489        296 -------GGELRIVANAFL  307 (342)
T ss_pred             -------CCEEEEEEeCCC
Confidence                   588876654443

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.29  E-value=6.6e-11  Score=104.16  Aligned_cols=105  Identities=16%  Similarity=0.101  Sum_probs=79.3

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.++.+|||+|||+|.+++.+++.  +++|+++|+|+.+++.+++|++.++  +. +++++++|+.+.+...        
T Consensus        38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~--~~-~v~~~~~d~~~~~~~~--------  106 (196)
T PRK07402         38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG--VK-NVEVIEGSAPECLAQL--------  106 (196)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC--CC-CeEEEECchHHHHhhC--------
Confidence            347889999999999999999863  4699999999999999999999998  75 7999999997643321        


Q ss_pred             cccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                               ...+|.++++.......+++.+.. |++        +|.+.++....
T Consensus       107 ---------~~~~d~v~~~~~~~~~~~l~~~~~~Lkp--------gG~li~~~~~~  145 (196)
T PRK07402        107 ---------APAPDRVCIEGGRPIKEILQAVWQYLKP--------GGRLVATASSL  145 (196)
T ss_pred             ---------CCCCCEEEEECCcCHHHHHHHHHHhcCC--------CeEEEEEeecH
Confidence                     123688888754322345555544 554        48887776543

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=3.7e-11  Score=110.89  Aligned_cols=105  Identities=19%  Similarity=0.221  Sum_probs=77.0

Q ss_pred             CCeEEEEeccceeecCcChHHHHHHHhhcc--CCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHh
Q psy16898        132 NGCTFKMDFSKVYWNSRLSTEHERVTKEVR--EGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLN  207 (324)
Q Consensus       132 ~g~~f~id~~~~f~~~r~~~e~~~~~~~~~--~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n  207 (324)
                      .+++|.-++. +|--.++..--+.+++.+.  .+.+|||+|||.|.+|+.+|+..  .+|+.+|+|..|++.+++|++.|
T Consensus       127 ~~~~~~t~pG-VFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N  205 (300)
T COG2813         127 HELTFKTLPG-VFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN  205 (300)
T ss_pred             CceEEEeCCC-CCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc
Confidence            4455555554 4432333323334555543  35599999999999999999954  59999999999999999999999


Q ss_pred             CCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        208 ERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       208 ~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      +  ++ +..++..|..+-..                    .+||.||+|||-.
T Consensus       206 ~--~~-~~~v~~s~~~~~v~--------------------~kfd~IisNPPfh  235 (300)
T COG2813         206 G--VE-NTEVWASNLYEPVE--------------------GKFDLIISNPPFH  235 (300)
T ss_pred             C--CC-ccEEEEeccccccc--------------------ccccEEEeCCCcc
Confidence            9  87 44677777765332                    2499999999984

>PRK14968 putative methyltransferase; Provisional

Probab=99.28  E-value=4.7e-11  Score=103.50  Aligned_cols=79  Identities=25%  Similarity=0.414  Sum_probs=67.6

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCC-eEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTP-ISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~-v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .++.+|||+|||+|.++..+++.+++|+++|+|+.+++.+++|+..++  +.++ +.++++|..+...+           
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~~~~-----------   88 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNN--IRNNGVEVIRSDLFEPFRG-----------   88 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcC--CCCcceEEEeccccccccc-----------
Confidence            578899999999999999999998899999999999999999999988  7533 88999997653211           


Q ss_pred             cCCCCCCCCcccEEEECChhh
Q psy16898        240 SEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~  260 (324)
                              ..||.|++|||..
T Consensus        89 --------~~~d~vi~n~p~~  101 (188)
T PRK14968         89 --------DKFDVILFNPPYL  101 (188)
T ss_pred             --------cCceEEEECCCcC
Confidence                    2499999999974

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.27  E-value=4.1e-11  Score=101.03  Aligned_cols=103  Identities=17%  Similarity=0.195  Sum_probs=79.2

Q ss_pred             cCCCEEEEEcCCCchhHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAAR---RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~---~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +++.+|||+|||+|.++..+++   .+++++|+|+|+.+++.|+++++.++  ++ +++++++|+.+ +....       
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~--~~-ni~~~~~d~~~-l~~~~-------   70 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG--LD-NIEFIQGDIED-LPQEL-------   70 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT--ST-TEEEEESBTTC-GCGCS-------
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc--cc-ccceEEeehhc-ccccc-------
Confidence            4678999999999999999994   26799999999999999999999999  87 89999999998 33210       


Q ss_pred             cccCCCCCCCCcccEEEECChhh----hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPAT----AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~----a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                               ...||+|+++.+..    ...+++.+.. ++++        |.+.+..+.
T Consensus        71 ---------~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~--------G~~i~~~~~  112 (152)
T PF13847_consen   71 ---------EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPG--------GILIISDPN  112 (152)
T ss_dssp             ---------STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEE--------EEEEEEEEE
T ss_pred             ---------CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCC--------cEEEEEECC
Confidence                     02499999986542    2345666555 6664        776666555

...

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.25  E-value=3.5e-11  Score=107.36  Aligned_cols=100  Identities=25%  Similarity=0.254  Sum_probs=80.2

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      +|.+|||+|||.|.++.++|+.|+.|+|+|+++.+++.|+..+..++  +.  +.+.+..+.++...             
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~g--v~--i~y~~~~~edl~~~-------------  121 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESG--VN--IDYRQATVEDLASA-------------  121 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcc--cc--ccchhhhHHHHHhc-------------
Confidence            78899999999999999999999999999999999999999999999  75  77777777776543             


Q ss_pred             CCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        242 GNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                           +.+||+|++.     .|. +..|+.+... +||+        |++...+.-+
T Consensus       122 -----~~~FDvV~cmEVlEHv~d-p~~~~~~c~~lvkP~--------G~lf~STinr  164 (243)
T COG2227         122 -----GGQFDVVTCMEVLEHVPD-PESFLRACAKLVKPG--------GILFLSTINR  164 (243)
T ss_pred             -----CCCccEEEEhhHHHccCC-HHHHHHHHHHHcCCC--------cEEEEecccc
Confidence                 3569999884     444 3457777766 5554        7766665544

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.25  E-value=8.6e-11  Score=116.10  Aligned_cols=81  Identities=21%  Similarity=0.277  Sum_probs=69.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.+|++|||+|||+|.+++.+++.   +++|+|+|+++.+++.+++|++.++  +. +++++++|+.++.....      
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g--~~-~v~~~~~D~~~~~~~~~------  318 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG--LT-NIETKALDARKVHEKFA------  318 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--CC-eEEEEeCCcccccchhc------
Confidence            457899999999999999999984   3599999999999999999999999  87 69999999987542211      


Q ss_pred             hcccCCCCCCCCcccEEEECChhh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                 ..||.|++|||.+
T Consensus       319 -----------~~fD~Vl~D~Pcs  331 (444)
T PRK14902        319 -----------EKFDKILVDAPCS  331 (444)
T ss_pred             -----------ccCCEEEEcCCCC
Confidence                       2499999999964

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.25  E-value=1.6e-10  Score=105.77  Aligned_cols=134  Identities=25%  Similarity=0.260  Sum_probs=90.6

Q ss_pred             eEEEEeccceeecCcChHHHH---HHHhhccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCC
Q psy16898        134 CTFKMDFSKVYWNSRLSTEHE---RVTKEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNER  209 (324)
Q Consensus       134 ~~f~id~~~~f~~~r~~~e~~---~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~  209 (324)
                      ....+++...|-.-...+-+.   .+.....++.+|||+|||+|.+++.+++.|+ +|+|+|+|+.+++.|++|++.|+ 
T Consensus        88 ~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~-  166 (250)
T PRK00517         88 INIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG-  166 (250)
T ss_pred             EEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-
Confidence            345566655444322222221   1222356889999999999999999988887 69999999999999999999999 


Q ss_pred             CCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh-HHHHHHHhc-cchhhcCCCCCCCEEEE
Q psy16898        210 QVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA-VEYVRYLKV-LTREEFGKLSRPPVLYL  287 (324)
Q Consensus       210 ~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a-~~~l~~~~~-l~~~~~~~~~~~g~vh~  287 (324)
                       +.+++.+..+|.                          .||.|++|..... ..+++.+.. ++        ++|.+.+
T Consensus       167 -~~~~~~~~~~~~--------------------------~fD~Vvani~~~~~~~l~~~~~~~Lk--------pgG~lil  211 (250)
T PRK00517        167 -VELNVYLPQGDL--------------------------KADVIVANILANPLLELAPDLARLLK--------PGGRLIL  211 (250)
T ss_pred             -CCceEEEccCCC--------------------------CcCEEEEcCcHHHHHHHHHHHHHhcC--------CCcEEEE
Confidence             754566554442                          2999999975432 234444443 44        4589888


Q ss_pred             EEcccCCChhHHhHhh
Q psy16898        288 YCFLPKMDLETKKKIK  303 (324)
Q Consensus       288 y~f~~~~~~~~~~~v~  303 (324)
                      ..+.........+..+
T Consensus       212 sgi~~~~~~~v~~~l~  227 (250)
T PRK00517        212 SGILEEQADEVLEAYE  227 (250)
T ss_pred             EECcHhhHHHHHHHHH
Confidence            8777655544444443

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.24  E-value=7.4e-11  Score=104.53  Aligned_cols=106  Identities=13%  Similarity=0.140  Sum_probs=79.4

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      ++.+|||+|||+|.++..+++.  +.+|+|+|+|+.+++.|++|++.++  +. ++.++++|+.+.+.....        
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~--~~-~v~~~~~d~~~~l~~~~~--------  108 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG--LT-NLRLLCGDAVEVLLDMFP--------  108 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC--CC-CEEEEecCHHHHHHHHcC--------
Confidence            5779999999999999999874  4589999999999999999999998  85 799999999433332111        


Q ss_pred             cCCCCCCCCcccEEEECChhh------------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        240 SEGNSTGGTAVARVIMNLPAT------------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~------------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                             ...||.|+++.|..            ...++..+.. |++        +|.+.+.+....
T Consensus       109 -------~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp--------gG~l~i~~~~~~  160 (202)
T PRK00121        109 -------DGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKP--------GGEIHFATDWEG  160 (202)
T ss_pred             -------ccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCC--------CCEEEEEcCCHH
Confidence                   13599999976531            1346666655 555        488887654433

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.24  E-value=8.1e-11  Score=103.85  Aligned_cols=92  Identities=18%  Similarity=0.117  Sum_probs=72.4

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .++.+|||+|||+|.+++.+|++|.+|+|+|+|+.|++.+++++..++  +. ++++..+|+.++..             
T Consensus        29 ~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~--~~-~v~~~~~d~~~~~~-------------   92 (197)
T PRK11207         29 VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAEN--LD-NLHTAVVDLNNLTF-------------   92 (197)
T ss_pred             CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcC--CC-cceEEecChhhCCc-------------
Confidence            366899999999999999999999999999999999999999999888  76 68999999765421             


Q ss_pred             CCCCCCCCcccEEEECCh------hhhHHHHHHHhc-cchh
Q psy16898        241 EGNSTGGTAVARVIMNLP------ATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP------~~a~~~l~~~~~-l~~~  274 (324)
                            ...||.|+++..      .....++..+.. |+++
T Consensus        93 ------~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkpg  127 (197)
T PRK11207         93 ------DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG  127 (197)
T ss_pred             ------CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCC
Confidence                  124999987632      223456666655 5654

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.24  E-value=9.2e-11  Score=115.91  Aligned_cols=114  Identities=20%  Similarity=0.173  Sum_probs=84.2

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ..+|++|||+|||+|..++.+++.   +.+|+|+|+|+.+++.+++|++.++  +. +++++++|+.++..         
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g--~~-~v~~~~~Da~~~~~---------  315 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG--IT-IIETIEGDARSFSP---------  315 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC--CC-eEEEEeCccccccc---------
Confidence            457899999999999999988873   4599999999999999999999999  86 79999999987532         


Q ss_pred             hcccCCCCCCCCcccEEEECChhhhHHHHH---------------HHhc----cchhhcCCCCCCCEEEEEEcccCCC
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATAVEYVR---------------YLKV----LTREEFGKLSRPPVLYLYCFLPKMD  295 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~---------------~~~~----l~~~~~~~~~~~g~vh~y~f~~~~~  295 (324)
                                ...||.|++|+|.++...+.               .+..    +-......+++||.+.+.+|+-..+
T Consensus       316 ----------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~  383 (445)
T PRK14904        316 ----------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPE  383 (445)
T ss_pred             ----------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence                      13499999999985432211               0100    0001123456789988887777533

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.24  E-value=1.3e-10  Score=108.40  Aligned_cols=90  Identities=18%  Similarity=0.107  Sum_probs=69.6

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      ++.+|||+|||+|.+++.++++|.+|+|+|+|+.|++.++++++.++  +  ++++...|+.....              
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~--l--~v~~~~~D~~~~~~--------------  181 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKEN--L--NIRTGLYDINSASI--------------  181 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--C--ceEEEEechhcccc--------------
Confidence            45599999999999999999999999999999999999999999988  7  48888888765311              


Q ss_pred             CCCCCCCcccEEEECCh------hhhHHHHHHHhc-cchh
Q psy16898        242 GNSTGGTAVARVIMNLP------ATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~npP------~~a~~~l~~~~~-l~~~  274 (324)
                           ...||.|++...      .....++..+.. ++++
T Consensus       182 -----~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~Lkpg  216 (287)
T PRK12335        182 -----QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPG  216 (287)
T ss_pred             -----cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCC
Confidence                 135999988632      222345555544 5543

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.23  E-value=2.8e-10  Score=98.18  Aligned_cols=115  Identities=16%  Similarity=0.119  Sum_probs=90.3

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.+|++++|+|||||++++.++.  ..++|+|+|-++++++..++|++..+  ++ |++++.+|+.+.+...        
T Consensus        32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg--~~-n~~vv~g~Ap~~L~~~--------  100 (187)
T COG2242          32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG--VD-NLEVVEGDAPEALPDL--------  100 (187)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC--CC-cEEEEeccchHhhcCC--------
Confidence            56899999999999999999995  45699999999999999999999999  87 9999999999988753        


Q ss_pred             cccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhHhh
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKIK  303 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~  303 (324)
                                .+||+|++.==..-.+.++.+.. |+++        |.+..-...-.......++.+
T Consensus       101 ----------~~~daiFIGGg~~i~~ile~~~~~l~~g--------grlV~naitlE~~~~a~~~~~  149 (187)
T COG2242         101 ----------PSPDAIFIGGGGNIEEILEAAWERLKPG--------GRLVANAITLETLAKALEALE  149 (187)
T ss_pred             ----------CCCCEEEECCCCCHHHHHHHHHHHcCcC--------CeEEEEeecHHHHHHHHHHHH
Confidence                      24999999754434456777665 6654        777766655554444444443

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.23  E-value=1.4e-10  Score=101.36  Aligned_cols=114  Identities=18%  Similarity=0.151  Sum_probs=81.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.++.+|||+|||+|.+++.++++  +++|+++|+|+.+++.|++|++.++  +. +++++++|+...+           
T Consensus        29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~--~~-~i~~~~~d~~~~~-----------   94 (187)
T PRK08287         29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG--CG-NIDIIPGEAPIEL-----------   94 (187)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC--CC-CeEEEecCchhhc-----------
Confidence            457889999999999999999985  3599999999999999999999998  76 7999999974311           


Q ss_pred             cccCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhHhhh
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKS  304 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~  304 (324)
                               ...||.|+++.... ...+++.+.. |++        +|.+.+.........+..+..+.
T Consensus        95 ---------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~--------gG~lv~~~~~~~~~~~~~~~l~~  146 (187)
T PRK08287         95 ---------PGKADAIFIGGSGGNLTAIIDWSLAHLHP--------GGRLVLTFILLENLHSALAHLEK  146 (187)
T ss_pred             ---------CcCCCEEEECCCccCHHHHHHHHHHhcCC--------CeEEEEEEecHhhHHHHHHHHHH
Confidence                     12499999975421 2234444433 544        58876654444444444444443

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.22  E-value=1.4e-10  Score=114.04  Aligned_cols=82  Identities=24%  Similarity=0.303  Sum_probs=68.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.+|++|||+|||+|..++.+++.+  .+|+|+|+|+.+++.+++|++.++  +.  ++++++|+.+..... .      
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g--~~--~~~~~~D~~~~~~~~-~------  310 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG--LK--ATVIVGDARDPAQWW-D------  310 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC--CC--eEEEEcCcccchhhc-c------
Confidence            4589999999999999999999853  599999999999999999999998  75  789999997642210 0      


Q ss_pred             cccCCCCCCCCcccEEEECChhhh
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                               ...||.|++|||.++
T Consensus       311 ---------~~~fD~Vl~D~Pcs~  325 (427)
T PRK10901        311 ---------GQPFDRILLDAPCSA  325 (427)
T ss_pred             ---------cCCCCEEEECCCCCc
Confidence                     135999999999863

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.21  E-value=1.2e-10  Score=106.60  Aligned_cols=101  Identities=21%  Similarity=0.143  Sum_probs=77.8

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .++.+|||+|||+|.+++.+++.|.+|+++|+|+.+++.|++++...+  +.++++++++|+.++....           
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g--~~~~v~~~~~d~~~l~~~~-----------  109 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKG--VSDNMQFIHCAAQDIAQHL-----------  109 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CccceEEEEcCHHHHhhhc-----------
Confidence            356799999999999999999999999999999999999999999888  7668999999998864321           


Q ss_pred             CCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        241 EGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                            ...||.|+++..-    ....++..+.. +++        ||.+.+.
T Consensus       110 ------~~~fD~V~~~~vl~~~~~~~~~l~~~~~~Lkp--------gG~l~i~  148 (255)
T PRK11036        110 ------ETPVDLILFHAVLEWVADPKSVLQTLWSVLRP--------GGALSLM  148 (255)
T ss_pred             ------CCCCCEEEehhHHHhhCCHHHHHHHHHHHcCC--------CeEEEEE
Confidence                  1359999986331    12234555544 555        4776543

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.21  E-value=1.4e-10  Score=114.17  Aligned_cols=85  Identities=20%  Similarity=0.264  Sum_probs=69.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.+|++|||+|||+|+.++.+++.   ..+|+|+|+++.+++.+++|++.++  +. +++++++|+.++......     
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g--~~-~v~~~~~D~~~~~~~~~~-----  321 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG--LK-SIKILAADSRNLLELKPQ-----  321 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC--CC-eEEEEeCChhhccccccc-----
Confidence            457899999999999999999984   2499999999999999999999999  87 699999999876421100     


Q ss_pred             hcccCCCCCCCCcccEEEECChhhh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                               ....||.|++|+|.++
T Consensus       322 ---------~~~~fD~Vl~DaPCSg  337 (434)
T PRK14901        322 ---------WRGYFDRILLDAPCSG  337 (434)
T ss_pred             ---------ccccCCEEEEeCCCCc
Confidence                     0135999999999753

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.21  E-value=1.2e-10  Score=102.39  Aligned_cols=105  Identities=15%  Similarity=0.182  Sum_probs=81.7

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .+.++||+|||+|.+++.+|++  .+.|+|+|+++.+++.|++|+..++  +. +++++++|+.+++.....        
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~--l~-ni~~i~~d~~~~~~~~~~--------   84 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG--LK-NLHVLCGDANELLDKFFP--------   84 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC--CC-CEEEEccCHHHHHHhhCC--------
Confidence            4569999999999999999985  5699999999999999999999988  87 899999999987643221        


Q ss_pred             cCCCCCCCCcccEEEECChhh------------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        240 SEGNSTGGTAVARVIMNLPAT------------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~------------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                             ...+|.|++|+|.-            ...++..+.. |++        ||.+++.+-..
T Consensus        85 -------~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkp--------gG~l~~~td~~  135 (194)
T TIGR00091        85 -------DGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKK--------GGVIHFKTDNE  135 (194)
T ss_pred             -------CCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCC--------CCEEEEEeCCH
Confidence                   13599999997652            0246666555 665        48887655433

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.20  E-value=5.7e-11  Score=111.05  Aligned_cols=104  Identities=17%  Similarity=0.269  Sum_probs=79.2

Q ss_pred             CeEEEEeccceeecCcChHHHHHHHh--hccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy16898        133 GCTFKMDFSKVYWNSRLSTEHERVTK--EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQ  210 (324)
Q Consensus       133 g~~f~id~~~~f~~~r~~~e~~~~~~--~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~  210 (324)
                      |++.+-.+++-|+.+....+  ++++  .+.++++|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++..++  
T Consensus         7 ~~~~kk~~GQnFL~d~~i~~--~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~--   82 (294)
T PTZ00338          7 GMVFNKKFGQHILKNPLVLD--KIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSP--   82 (294)
T ss_pred             CcCcCCCCCccccCCHHHHH--HHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcC--
Confidence            33444444554543332222  3444  35688999999999999999999988899999999999999999998776  


Q ss_pred             CCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        211 VKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       211 l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      ..++++++++|+.+...                    ..||.||.|||+.
T Consensus        83 ~~~~v~ii~~Dal~~~~--------------------~~~d~VvaNlPY~  112 (294)
T PTZ00338         83 LASKLEVIEGDALKTEF--------------------PYFDVCVANVPYQ  112 (294)
T ss_pred             CCCcEEEEECCHhhhcc--------------------cccCEEEecCCcc
Confidence            55689999999987421                    1389999999995

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.20  E-value=4.3e-11  Score=104.13  Aligned_cols=82  Identities=30%  Similarity=0.424  Sum_probs=62.6

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhcCC--E---------EEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHH
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARRGA--I---------VAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQ  227 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~g~--~---------V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~  227 (324)
                      ...+|+.|||.|||+|++.+++|..+.  .         ++|.|+++.+++.+++|++..+  +.+.+.+.+.|+.++..
T Consensus        25 ~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag--~~~~i~~~~~D~~~l~~  102 (179)
T PF01170_consen   25 GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG--VEDYIDFIQWDARELPL  102 (179)
T ss_dssp             T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---CGGEEEEE--GGGGGG
T ss_pred             CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc--cCCceEEEecchhhccc
Confidence            356889999999999999999988432  4         8899999999999999999988  87789999999998762


Q ss_pred             HHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        228 TDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      .                  ...+|.||+|||+.
T Consensus       103 ~------------------~~~~d~IvtnPPyG  117 (179)
T PF01170_consen  103 P------------------DGSVDAIVTNPPYG  117 (179)
T ss_dssp             T------------------TSBSCEEEEE--ST
T ss_pred             c------------------cCCCCEEEECcchh
Confidence            1                  13599999999995

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.20  E-value=1.8e-10  Score=92.82  Aligned_cols=95  Identities=26%  Similarity=0.303  Sum_probs=73.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.++.+|||+|||+|.++..++++  +.+|+++|+|+.+++.+++|++.++  +. +++++.+|+.+.+...        
T Consensus        17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~-~~~~~~~~~~~~~~~~--------   85 (124)
T TIGR02469        17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG--VS-NIVIVEGDAPEALEDS--------   85 (124)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC--CC-ceEEEeccccccChhh--------
Confidence            346789999999999999999985  4699999999999999999999888  76 7999999977543221        


Q ss_pred             cccCCCCCCCCcccEEEECChh-hhHHHHHHHhc-cchh
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPA-TAVEYVRYLKV-LTRE  274 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~-~a~~~l~~~~~-l~~~  274 (324)
                               ...||.|+++.+. ...++++.+.. |+++
T Consensus        86 ---------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g  115 (124)
T TIGR02469        86 ---------LPEPDRVFIGGSGGLLQEILEAIWRRLRPG  115 (124)
T ss_pred             ---------cCCCCEEEECCcchhHHHHHHHHHHHcCCC
Confidence                     1349999997643 23456665555 6654

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.20  E-value=2.9e-10  Score=100.13  Aligned_cols=90  Identities=17%  Similarity=0.070  Sum_probs=69.0

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      ++.+|||+|||+|.+++.+|++|++|+|+|+|+.|++.+++++..++  +.  +.+..+|+.....              
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~--~~--v~~~~~d~~~~~~--------------   91 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKAREN--LP--LRTDAYDINAAAL--------------   91 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhC--CC--ceeEeccchhccc--------------
Confidence            46799999999999999999999999999999999999999999888  74  7777777653211              


Q ss_pred             CCCCCCCcccEEEECChh------hhHHHHHHHhc-cchh
Q psy16898        242 GNSTGGTAVARVIMNLPA------TAVEYVRYLKV-LTRE  274 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~npP~------~a~~~l~~~~~-l~~~  274 (324)
                           ...||.|+++.+.      ....++..+.. |+++
T Consensus        92 -----~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  126 (195)
T TIGR00477        92 -----NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPG  126 (195)
T ss_pred             -----cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence                 1249999887442      22345555544 5554

Part of a tellurite-reducing operon tehA and tehB

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.20  E-value=1.6e-10  Score=109.23  Aligned_cols=101  Identities=21%  Similarity=0.226  Sum_probs=78.7

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      +|.+|||+|||+|.++..+++.|++|+|+|+++.+++.|++++..++  ...+++++++|+.++...             
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~--~~~~i~~~~~dae~l~~~-------------  195 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDP--VTSTIEYLCTTAEKLADE-------------  195 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--cccceeEEecCHHHhhhc-------------
Confidence            57799999999999999999999999999999999999999988776  545799999999876432             


Q ss_pred             CCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        242 GNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                           ...||.|++.     .+. ...++..+.. |+++        |.+.+.+..
T Consensus       196 -----~~~FD~Vi~~~vLeHv~d-~~~~L~~l~r~LkPG--------G~liist~n  237 (322)
T PLN02396        196 -----GRKFDAVLSLEVIEHVAN-PAEFCKSLSALTIPN--------GATVLSTIN  237 (322)
T ss_pred             -----cCCCCEEEEhhHHHhcCC-HHHHHHHHHHHcCCC--------cEEEEEECC
Confidence                 1359999873     222 2357777766 6654        666655543

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.18  E-value=2.6e-10  Score=105.18  Aligned_cols=107  Identities=23%  Similarity=0.255  Sum_probs=77.9

Q ss_pred             CCeEEEEeccceeecCcChHHHHH--HHhh--ccCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHH
Q psy16898        132 NGCTFKMDFSKVYWNSRLSTEHER--VTKE--VREGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIR  205 (324)
Q Consensus       132 ~g~~f~id~~~~f~~~r~~~e~~~--~~~~--~~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~  205 (324)
                      .|..|.++...  +.+|..+|...  ++..  ..++.+|||+|||+|.+++.+++..  .+|+|+|+|+.+++.|++|+.
T Consensus        76 ~~~~~~~~~~~--lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~  153 (275)
T PRK09328         76 WGLDFKVSPGV--LIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK  153 (275)
T ss_pred             cCcEEEECCCc--eeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence            34566666542  24555555432  2222  3467799999999999999999854  699999999999999999998


Q ss_pred             HhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH
Q psy16898        206 LNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV  262 (324)
Q Consensus       206 ~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~  262 (324)
                       ++  ...++.++++|+.+...                   ...||.|++|||+...
T Consensus       154 -~~--~~~~i~~~~~d~~~~~~-------------------~~~fD~Iv~npPy~~~  188 (275)
T PRK09328        154 -HG--LGARVEFLQGDWFEPLP-------------------GGRFDLIVSNPPYIPE  188 (275)
T ss_pred             -hC--CCCcEEEEEccccCcCC-------------------CCceeEEEECCCcCCc
Confidence             33  33479999999854221                   1359999999999644

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.18  E-value=5.7e-11  Score=102.16  Aligned_cols=78  Identities=26%  Similarity=0.342  Sum_probs=66.3

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +.++++|||+|||+|.++..+++++++|+|+|+++.+++.+++|+...     ++++++++|+.++...           
T Consensus        11 ~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~-----~~v~ii~~D~~~~~~~-----------   74 (169)
T smart00650       11 LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA-----DNLTVIHGDALKFDLP-----------   74 (169)
T ss_pred             CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC-----CCEEEEECchhcCCcc-----------
Confidence            357789999999999999999999889999999999999999998532     2799999999876432           


Q ss_pred             cCCCCCCCCcccEEEECChhh
Q psy16898        240 SEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~  260 (324)
                             ...||.|++|||+.
T Consensus        75 -------~~~~d~vi~n~Py~   88 (169)
T smart00650       75 -------KLQPYKVVGNLPYN   88 (169)
T ss_pred             -------ccCCCEEEECCCcc
Confidence                   12489999999995

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.17  E-value=6.6e-11  Score=105.76  Aligned_cols=79  Identities=14%  Similarity=0.116  Sum_probs=66.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.++.+|||+|||+|.++..+++..   .+|+++|+++.+++.|++|++.++  +. +++++++|+.+....        
T Consensus        75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g--~~-~v~~~~~d~~~~~~~--------  143 (215)
T TIGR00080        75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG--LD-NVIVIVGDGTQGWEP--------  143 (215)
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC--CC-CeEEEECCcccCCcc--------
Confidence            5688999999999999999999853   369999999999999999999999  85 899999998764322        


Q ss_pred             hcccCCCCCCCCcccEEEECChh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPA  259 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~  259 (324)
                                ...||.|+++++.
T Consensus       144 ----------~~~fD~Ii~~~~~  156 (215)
T TIGR00080       144 ----------LAPYDRIYVTAAG  156 (215)
T ss_pred             ----------cCCCCEEEEcCCc
Confidence                      1349999998754

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.17  E-value=1e-10  Score=110.25  Aligned_cols=84  Identities=21%  Similarity=0.209  Sum_probs=66.0

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHh-CCCCCCCeEEEe-ccHHHHHHHHHHHhhhhh
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLN-ERQVKTPISATQ-KDARDFLQTDARAHLVRW  237 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n-~~~l~~~v~~~~-~D~~~~~~~~~~~~~~~~  237 (324)
                      ++.++||+|||+|.++..++.+  +++++|+|+++.|++.|++|++.| +  +.+++++.. .|..++......      
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~--l~~~I~~~~~~~~~~i~~~i~~------  185 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG--LNGAIRLRLQKDSKAIFKGIIH------  185 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC--CcCcEEEEEccchhhhhhcccc------
Confidence            4579999999999988777763  679999999999999999999999 8  887888864 455444332111      


Q ss_pred             cccCCCCCCCCcccEEEECChhhh
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                              ....||.|++|||+.+
T Consensus       186 --------~~~~fDlivcNPPf~~  201 (321)
T PRK11727        186 --------KNERFDATLCNPPFHA  201 (321)
T ss_pred             --------cCCceEEEEeCCCCcC
Confidence                    0246999999999963

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.17  E-value=6.1e-10  Score=100.17  Aligned_cols=112  Identities=13%  Similarity=0.138  Sum_probs=81.3

Q ss_pred             HHHHHhh--ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHH
Q psy16898        153 HERVTKE--VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQ  227 (324)
Q Consensus       153 ~~~~~~~--~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~  227 (324)
                      +..+++.  +.++++|||+|||+|.++..+++.   +++|+|+|+|+.+++.+++|+..++  ++ +++++++|+.++..
T Consensus        34 ~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~-~v~~~~~d~~~~~~  110 (231)
T TIGR02752        34 RKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG--LH-NVELVHGNAMELPF  110 (231)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC--CC-ceEEEEechhcCCC
Confidence            3344444  457889999999999999999874   3599999999999999999998887  75 79999999876421


Q ss_pred             HHHHHhhhhhcccCCCCCCCCcccEEEECChhh----hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        228 TDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT----AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~----a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                      .                  ...||.|+++..-.    ...++..+.. |++        ||.+.+..+...
T Consensus       111 ~------------------~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~--------gG~l~~~~~~~~  155 (231)
T TIGR02752       111 D------------------DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKP--------GGKVVCLETSQP  155 (231)
T ss_pred             C------------------CCCccEEEEecccccCCCHHHHHHHHHHHcCc--------CeEEEEEECCCC
Confidence            1                  13599999864321    2334444433 554        588877665543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.16  E-value=3.7e-10  Score=103.12  Aligned_cols=100  Identities=20%  Similarity=0.251  Sum_probs=75.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      +.++.+|||+|||+|..++.+++    .+++|+|+|+|+.|++.|++|+..++  ...+++++++|+.+...        
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~--~~~~v~~~~~d~~~~~~--------  123 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVIEGDIRDIAI--------  123 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEeCChhhCCC--------
Confidence            46888999999999999988876    35799999999999999999999887  76689999999876421        


Q ss_pred             hhcccCCCCCCCCcccEEEECChh------hhHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLPA------TAVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP~------~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                                  ..+|.|+++..-      ....+++.+.. |++        ||.+.+..
T Consensus       124 ------------~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~Lkp--------GG~l~l~e  164 (247)
T PRK15451        124 ------------ENASMVVLNFTLQFLEPSERQALLDKIYQGLNP--------GGALVLSE  164 (247)
T ss_pred             ------------CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCC--------CCEEEEEE
Confidence                        238999987432      12234555544 554        47776654

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.14  E-value=3.4e-10  Score=111.31  Aligned_cols=84  Identities=17%  Similarity=0.203  Sum_probs=66.3

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.+|++|||+|||+|+.++.+++.  +++|+|+|+++.+++.+++|++.++  +...+.+..+|+....... .      
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g--~~~~v~~~~~d~~~~~~~~-~------  306 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG--LTIKAETKDGDGRGPSQWA-E------  306 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC--CCeEEEEeccccccccccc-c------
Confidence            457899999999999999999984  3699999999999999999999998  7633455777765432100 0      


Q ss_pred             cccCCCCCCCCcccEEEECChhhh
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                               ...||.|++|+|.++
T Consensus       307 ---------~~~fD~VllDaPcSg  321 (426)
T TIGR00563       307 ---------NEQFDRILLDAPCSA  321 (426)
T ss_pred             ---------ccccCEEEEcCCCCC
Confidence                     135999999999865

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.14  E-value=9.3e-11  Score=110.13  Aligned_cols=82  Identities=23%  Similarity=0.340  Sum_probs=71.4

Q ss_pred             hhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEec-cHHHHHHHHHHHhhhh
Q psy16898        158 KEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQK-DARDFLQTDARAHLVR  236 (324)
Q Consensus       158 ~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~-D~~~~~~~~~~~~~~~  236 (324)
                      +.+++|+.|||.|||||+|.+.+...|++|+|+|++..|++-|+.|++..+  ++ ...++.+ ||......        
T Consensus       193 a~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~--i~-~~~~~~~~Da~~lpl~--------  261 (347)
T COG1041         193 ARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYG--IE-DYPVLKVLDATNLPLR--------  261 (347)
T ss_pred             hccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhC--cC-ceeEEEecccccCCCC--------
Confidence            357799999999999999999999999999999999999999999999998  87 5666666 98876521        


Q ss_pred             hcccCCCCCCCCcccEEEECChhh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                ...+|.|+.|||+.
T Consensus       262 ----------~~~vdaIatDPPYG  275 (347)
T COG1041         262 ----------DNSVDAIATDPPYG  275 (347)
T ss_pred             ----------CCccceEEecCCCC
Confidence                      13599999999995

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.13  E-value=9.4e-11  Score=103.69  Aligned_cols=111  Identities=20%  Similarity=0.230  Sum_probs=81.9

Q ss_pred             EEeCCeEEEEeccceeecCcChHHHHHHHhh--ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHH
Q psy16898        129 HKENGCTFKMDFSKVYWNSRLSTEHERVTKE--VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIR  205 (324)
Q Consensus       129 ~~e~g~~f~id~~~~f~~~r~~~e~~~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~  205 (324)
                      +..+|+++.=....   ||-..+  .+-++.  .++|++|||.|.|-|++|+.++++|+ +|+.+|.+|..++.|+-|-=
T Consensus       104 iEIdGIrMhrt~~t---dP~~Dt--~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPw  178 (287)
T COG2521         104 IEIDGIRMHRTKGT---DPLEDT--LAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPW  178 (287)
T ss_pred             EEEccEEEecccCc---CcHHHH--HhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCC
Confidence            45689887632211   222111  112232  45799999999999999999999999 99999999999999877653


Q ss_pred             HhCCCCC-CCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH
Q psy16898        206 LNERQVK-TPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV  262 (324)
Q Consensus       206 ~n~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~  262 (324)
                      ..+  +. ..++++.||+.++++....                ..||.||-|||+++.
T Consensus       179 Sr~--l~~~~i~iilGD~~e~V~~~~D----------------~sfDaIiHDPPRfS~  218 (287)
T COG2521         179 SRE--LFEIAIKIILGDAYEVVKDFDD----------------ESFDAIIHDPPRFSL  218 (287)
T ss_pred             Ccc--ccccccEEecccHHHHHhcCCc----------------cccceEeeCCCccch
Confidence            333  32 3689999999999887532                459999999999764

>PLN02244 tocopherol O-methyltransferase

Probab=99.13  E-value=3.4e-10  Score=108.07  Aligned_cols=102  Identities=21%  Similarity=0.167  Sum_probs=79.0

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .++.+|||+|||+|.++..++++ |++|+|+|+|+.+++.++++++.++  +.++++++.+|+.+....           
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g--~~~~v~~~~~D~~~~~~~-----------  183 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQG--LSDKVSFQVADALNQPFE-----------  183 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcCcccCCCC-----------
Confidence            46789999999999999999986 7899999999999999999999888  876899999998764221           


Q ss_pred             cCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        240 SEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                             ...||.|++.     .|. ...++..+.. |++        ||.+.+.++.
T Consensus       184 -------~~~FD~V~s~~~~~h~~d-~~~~l~e~~rvLkp--------GG~lvi~~~~  225 (340)
T PLN02244        184 -------DGQFDLVWSMESGEHMPD-KRKFVQELARVAAP--------GGRIIIVTWC  225 (340)
T ss_pred             -------CCCccEEEECCchhccCC-HHHHHHHHHHHcCC--------CcEEEEEEec
Confidence                   1359999885     232 2345555544 665        4877766554

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=3.8e-10  Score=101.55  Aligned_cols=104  Identities=17%  Similarity=0.227  Sum_probs=89.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh--cC-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR--RG-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~--~g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.+|++|+|.|.|+|.++..+|+  .. .+|+..|+.++.++.|++|++..+  +.+++++..+|+.+.....       
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~--l~d~v~~~~~Dv~~~~~~~-------  162 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG--LGDRVTLKLGDVREGIDEE-------  162 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc--cccceEEEecccccccccc-------
Confidence            67999999999999999999997  22 499999999999999999999988  8877999999998866542       


Q ss_pred             hcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                                  .||+|++|+|+ ++++++.+.. |+++        |.+.||+=+-.
T Consensus       163 ------------~vDav~LDmp~-PW~~le~~~~~Lkpg--------g~~~~y~P~ve  199 (256)
T COG2519         163 ------------DVDAVFLDLPD-PWNVLEHVSDALKPG--------GVVVVYSPTVE  199 (256)
T ss_pred             ------------ccCEEEEcCCC-hHHHHHHHHHHhCCC--------cEEEEEcCCHH
Confidence                        39999999998 8899998877 7764        88888864433

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.12  E-value=2.5e-10  Score=101.34  Aligned_cols=80  Identities=16%  Similarity=0.131  Sum_probs=67.0

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.++++|||+|||+|.++..+++.   +++|+++|+++.+++.|++|++.++  +.++++++++|+.+.+..        
T Consensus        70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~--~~~~v~~~~~d~~~~~~~--------  139 (205)
T PRK13944         70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG--YWGVVEVYHGDGKRGLEK--------  139 (205)
T ss_pred             CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEECCcccCCcc--------
Confidence            457889999999999999988873   3599999999999999999999988  876799999998764332        


Q ss_pred             hcccCCCCCCCCcccEEEECChh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPA  259 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~  259 (324)
                                ...||.|+++-+.
T Consensus       140 ----------~~~fD~Ii~~~~~  152 (205)
T PRK13944        140 ----------HAPFDAIIVTAAA  152 (205)
T ss_pred             ----------CCCccEEEEccCc
Confidence                      1349999998653

>PLN02672 methionine S-methyltransferase

Probab=99.11  E-value=1.8e-10  Score=122.74  Aligned_cols=110  Identities=15%  Similarity=0.099  Sum_probs=82.5

Q ss_pred             eCCeEEEEeccceeecCcChHHHHH-HHhhcc----CCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHH
Q psy16898        131 ENGCTFKMDFSKVYWNSRLSTEHER-VTKEVR----EGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQAS  203 (324)
Q Consensus       131 e~g~~f~id~~~~f~~~r~~~e~~~-~~~~~~----~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N  203 (324)
                      -.|+.|.++++-  +.||-.+|... .+....    ++.+|||+|||+|.+++.++++.  ++|+|+|+|+.|++.|++|
T Consensus        84 F~~l~~~V~p~V--LIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~N  161 (1082)
T PLN02672         84 RKKLTMMEIPSI--FIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWIN  161 (1082)
T ss_pred             ecCCceeeCCCc--ccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence            478888888763  45665555432 122211    34689999999999999999853  5999999999999999999


Q ss_pred             HHHhCCCCC---------------CCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh
Q psy16898        204 IRLNERQVK---------------TPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       204 ~~~n~~~l~---------------~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                      ++.|+  ++               ++++++++|..+.....                 ...||.||.|||+..
T Consensus       162 a~~n~--l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~-----------------~~~fDlIVSNPPYI~  215 (1082)
T PLN02672        162 LYLNA--LDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDN-----------------NIELDRIVGCIPQIL  215 (1082)
T ss_pred             HHHcC--cccccccccccccccccccEEEEECchhhhcccc-----------------CCceEEEEECCCcCC
Confidence            99985  42               47999999998754221                 124999999999853

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.11  E-value=2.1e-09  Score=97.40  Aligned_cols=111  Identities=14%  Similarity=0.087  Sum_probs=83.2

Q ss_pred             HHhhccCCCEEEEEcCCCchhHHHHHh--c-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898        156 VTKEVREGDLVLDVFAGVGPFSIPAAR--R-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA  232 (324)
Q Consensus       156 ~~~~~~~g~~VLDl~~G~G~~al~~a~--~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~  232 (324)
                      ++....++++|||+|||+|.-++.+++  . +.+|+++|+++++++.|++|++.++  +.++++++.+|+.+.+.....+
T Consensus        62 ~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g--l~~~i~~~~gda~~~L~~l~~~  139 (234)
T PLN02781         62 MLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG--VDHKINFIQSDALSALDQLLNN  139 (234)
T ss_pred             HHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEccHHHHHHHHHhC
Confidence            344456788999999999998887776  2 3599999999999999999999999  8888999999999988765321


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECChhhh-HHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNLPATA-VEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~a-~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                      .            ....||.|++|.+... ..+++.+.. +++        ||++.+.
T Consensus       140 ~------------~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~--------GG~ii~d  177 (234)
T PLN02781        140 D------------PKPEFDFAFVDADKPNYVHFHEQLLKLVKV--------GGIIAFD  177 (234)
T ss_pred             C------------CCCCCCEEEECCCHHHHHHHHHHHHHhcCC--------CeEEEEE
Confidence            0            0135999999975421 245555444 554        4776653

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.10  E-value=2.2e-10  Score=105.28  Aligned_cols=76  Identities=25%  Similarity=0.314  Sum_probs=65.2

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +.++++|||+|||+|.++..+++++.+|+|+|+++.+++.+++++...     ++++++++|+.++..            
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~-----~~v~ii~~D~~~~~~------------   89 (258)
T PRK14896         27 DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA-----GNVEIIEGDALKVDL------------   89 (258)
T ss_pred             CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC-----CCEEEEEeccccCCc------------
Confidence            457899999999999999999999889999999999999999887532     279999999986421            


Q ss_pred             cCCCCCCCCcccEEEECChhh
Q psy16898        240 SEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~  260 (324)
                              ..||.|++|||+.
T Consensus        90 --------~~~d~Vv~NlPy~  102 (258)
T PRK14896         90 --------PEFNKVVSNLPYQ  102 (258)
T ss_pred             --------hhceEEEEcCCcc
Confidence                    1289999999995

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.10  E-value=1.4e-09  Score=97.17  Aligned_cols=134  Identities=16%  Similarity=0.061  Sum_probs=83.7

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh-C-------CC-CCCCeEEEeccHHHHHHHHHH
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLN-E-------RQ-VKTPISATQKDARDFLQTDAR  231 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n-~-------~~-l~~~v~~~~~D~~~~~~~~~~  231 (324)
                      .++.+|||+|||.|..++.+|++|..|+|+|+|+.|++.+....... .       +. -..+++++++|+.++....  
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~--  110 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD--  110 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc--
Confidence            57789999999999999999999999999999999999864322110 0       00 0125889999998753211  


Q ss_pred             HhhhhhcccCCCCCCCCcccEEE-----ECC-hhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCC--------h
Q psy16898        232 AHLVRWSQSEGNSTGGTAVARVI-----MNL-PATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMD--------L  296 (324)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~fD~Vi-----~np-P~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~--------~  296 (324)
                                     ...||.|+     +-+ |..-..++..+.. |++        ||.+++.+|.....        -
T Consensus       111 ---------------~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp--------gG~~ll~~~~~~~~~~~gpp~~~  167 (213)
T TIGR03840       111 ---------------LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP--------GARQLLITLDYDQSEMAGPPFSV  167 (213)
T ss_pred             ---------------CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC--------CCeEEEEEEEcCCCCCCCcCCCC
Confidence                           01255443     233 3333456777766 565        48777777654211        1


Q ss_pred             hHHhHhhhcCCCceEEEEeeccc
Q psy16898        297 ETKKKIKSYDPSYATLIRGIRRL  319 (324)
Q Consensus       297 ~~~~~v~~y~~~~~~~i~~~~~~  319 (324)
                      ...+..+.+.+...+...+....
T Consensus       168 ~~~eL~~~f~~~~~i~~~~~~~~  190 (213)
T TIGR03840       168 SPAEVEALYGGHYEIELLESRDV  190 (213)
T ss_pred             CHHHHHHHhcCCceEEEEeeccc
Confidence            22333445666666655554443

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=6e-10  Score=104.83  Aligned_cols=112  Identities=21%  Similarity=0.280  Sum_probs=91.1

Q ss_pred             eeecCcChHHHHHHH---hhcc-C-CCEEEEEcCCCchhHHHHHh-cCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCe
Q psy16898        143 VYWNSRLSTEHERVT---KEVR-E-GDLVLDVFAGVGPFSIPAAR-RGA-IVAANDLNPDSYAWLQASIRLNERQVKTPI  215 (324)
Q Consensus       143 ~f~~~r~~~e~~~~~---~~~~-~-g~~VLDl~~G~G~~al~~a~-~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v  215 (324)
                      +|+||+++.-|...+   +.+. . ..+|+|.+||||.=|+.+|. .+. +|+.+|+||.|++.+++|++.|.  .. +.
T Consensus        28 VFYNP~m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~--~~-~~  104 (380)
T COG1867          28 VFYNPAMEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS--GE-DA  104 (380)
T ss_pred             ceeCchhhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC--cc-cc
Confidence            899999876665422   2222 1 67999999999999999998 455 89999999999999999999995  44 57


Q ss_pred             EEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchh
Q psy16898        216 SATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       216 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~  274 (324)
                      ..++.|+..++.+..                 ..||+|=+||=.++..|++++.. .+.+
T Consensus       105 ~v~n~DAN~lm~~~~-----------------~~fd~IDiDPFGSPaPFlDaA~~s~~~~  147 (380)
T COG1867         105 EVINKDANALLHELH-----------------RAFDVIDIDPFGSPAPFLDAALRSVRRG  147 (380)
T ss_pred             eeecchHHHHHHhcC-----------------CCccEEecCCCCCCchHHHHHHHHhhcC
Confidence            888899999888742                 34999999998888899999977 5543

>KOG1540|consensus

Probab=99.09  E-value=7.8e-10  Score=99.15  Aligned_cols=118  Identities=20%  Similarity=0.196  Sum_probs=94.0

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc--------CCEEEEEeCCHHHHHHHHHHHHHhCCCCCC--CeEEEeccHHHHHHHHH
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR--------GAIVAANDLNPDSYAWLQASIRLNERQVKT--PISATQKDARDFLQTDA  230 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~--------g~~V~avD~~~~a~~~a~~N~~~n~~~l~~--~v~~~~~D~~~~~~~~~  230 (324)
                      .++.++||++||||.++..+.+.        ..+|+.+|+||+|++.+++.++..+  +..  .+.++++||.++..+. 
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~--l~~~~~~~w~~~dAE~LpFdd-  175 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP--LKASSRVEWVEGDAEDLPFDD-  175 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC--CCcCCceEEEeCCcccCCCCC-
Confidence            36789999999999999999873        2589999999999999999998766  654  4899999999876432 


Q ss_pred             HHhhhhhcccCCCCCCCCcccEEEE-----CChhhhHHHHHHHhccchhhcCCCCCCCEEEEEEcccCCChhHHhHhhhc
Q psy16898        231 RAHLVRWSQSEGNSTGGTAVARVIM-----NLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSY  305 (324)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~fD~Vi~-----npP~~a~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~y  305 (324)
                                       ..||..+|     |-|......-++++-||++        |.+.|-.|++.+.+........|
T Consensus       176 -----------------~s~D~yTiafGIRN~th~~k~l~EAYRVLKpG--------Grf~cLeFskv~~~~l~~fy~~y  230 (296)
T KOG1540|consen  176 -----------------DSFDAYTIAFGIRNVTHIQKALREAYRVLKPG--------GRFSCLEFSKVENEPLKWFYDQY  230 (296)
T ss_pred             -----------------CcceeEEEecceecCCCHHHHHHHHHHhcCCC--------cEEEEEEccccccHHHHHHHHhh
Confidence                             34898877     6666555677777777765        99999999999876666665554


Q ss_pred             C
Q psy16898        306 D  306 (324)
Q Consensus       306 ~  306 (324)
                      .
T Consensus       231 s  231 (296)
T KOG1540|consen  231 S  231 (296)
T ss_pred             h
Confidence            4

>PHA03412 putative methyltransferase; Provisional

Probab=99.08  E-value=2.1e-10  Score=103.00  Aligned_cols=72  Identities=21%  Similarity=0.184  Sum_probs=59.1

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc-----CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR-----GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~-----g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      .+.+|||+|||+|.+++.++++     ..+|+|+|+++.|++.|++|..        ++.++++|+.....         
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--------~~~~~~~D~~~~~~---------  111 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--------EATWINADALTTEF---------  111 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--------CCEEEEcchhcccc---------
Confidence            4679999999999999999873     3499999999999999997742        36788999875321         


Q ss_pred             hcccCCCCCCCCcccEEEECChhh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                ..+||+||+|||+.
T Consensus       112 ----------~~~FDlIIsNPPY~  125 (241)
T PHA03412        112 ----------DTLFDMAISNPPFG  125 (241)
T ss_pred             ----------cCCccEEEECCCCC
Confidence                      13599999999996

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.07  E-value=5.6e-10  Score=101.56  Aligned_cols=118  Identities=15%  Similarity=0.216  Sum_probs=84.1

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH-HHHHHHHHhh
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD-FLQTDARAHL  234 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~-~~~~~~~~~~  234 (324)
                      .+.+|.+||+.|.|+|.++..+++.   ..+|+..|.+++.++.|++|++.++  +.+++++.+.|+.+ ...+..    
T Consensus        37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g--l~~~v~~~~~Dv~~~g~~~~~----  110 (247)
T PF08704_consen   37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG--LDDNVTVHHRDVCEEGFDEEL----  110 (247)
T ss_dssp             T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT--CCTTEEEEES-GGCG--STT-----
T ss_pred             CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC--CCCCceeEecceecccccccc----
Confidence            3679999999999999999999983   3499999999999999999999999  98899999999863 221111    


Q ss_pred             hhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-c-chhhcCCCCCCCEEEEEEcccCCChhHHhHhh
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-L-TREEFGKLSRPPVLYLYCFLPKMDLETKKKIK  303 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l-~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~  303 (324)
                                  ...+|.|++|+|. +++.++.+.. | +++        |.+.||+=+-..-....+.++
T Consensus       111 ------------~~~~DavfLDlp~-Pw~~i~~~~~~L~~~g--------G~i~~fsP~ieQv~~~~~~L~  160 (247)
T PF08704_consen  111 ------------ESDFDAVFLDLPD-PWEAIPHAKRALKKPG--------GRICCFSPCIEQVQKTVEALR  160 (247)
T ss_dssp             ------------TTSEEEEEEESSS-GGGGHHHHHHHE-EEE--------EEEEEEESSHHHHHHHHHHHH
T ss_pred             ------------cCcccEEEEeCCC-HHHHHHHHHHHHhcCC--------ceEEEECCCHHHHHHHHHHHH
Confidence                        1349999999998 6777777766 7 554        777777544333333333333

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.06  E-value=1.4e-09  Score=95.18  Aligned_cols=100  Identities=19%  Similarity=0.180  Sum_probs=72.2

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      ++.++||+|||.|.-|+.+|++|..|+|+|.|+.+++.+++-++..+  ++  ++....|..++..              
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~--l~--i~~~~~Dl~~~~~--------------   91 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEG--LD--IRTRVADLNDFDF--------------   91 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT---T--EEEEE-BGCCBS---------------
T ss_pred             CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcC--ce--eEEEEecchhccc--------------
Confidence            56699999999999999999999999999999999999999998888  86  9999999765422              


Q ss_pred             CCCCCCCcccEEEEC-----C-hhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        242 GNSTGGTAVARVIMN-----L-PATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~n-----p-P~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                           ...||.|++.     + |......++.+.. ++++        |++.+.+|..
T Consensus        92 -----~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pG--------G~~li~~~~~  136 (192)
T PF03848_consen   92 -----PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPG--------GYNLIVTFME  136 (192)
T ss_dssp             -----TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEE--------EEEEEEEEB-
T ss_pred             -----cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCc--------EEEEEEEecc
Confidence                 1349998752     2 3334456677765 5654        7666555543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>KOG2904|consensus

Probab=99.06  E-value=6.1e-10  Score=100.68  Aligned_cols=101  Identities=15%  Similarity=0.118  Sum_probs=73.5

Q ss_pred             ecCcChHHHH--HHHhhc-----cCCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCe
Q psy16898        145 WNSRLSTEHE--RVTKEV-----REGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPI  215 (324)
Q Consensus       145 ~~~r~~~e~~--~~~~~~-----~~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v  215 (324)
                      +-||..+|-.  .+++.+     .++..+||+|||+|.+|+.++.  ..+.|+|+|.|+.|+..|.+|+++++  +.+++
T Consensus       124 lIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~--l~g~i  201 (328)
T KOG2904|consen  124 LIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK--LSGRI  201 (328)
T ss_pred             eecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh--hcCce
Confidence            3466666643  233332     2566899999999999999988  34699999999999999999999999  98888


Q ss_pred             EEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        216 SATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       216 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      .+++-+...-......             ....+.|.+++|||+-
T Consensus       202 ~v~~~~me~d~~~~~~-------------l~~~~~dllvsNPPYI  233 (328)
T KOG2904|consen  202 EVIHNIMESDASDEHP-------------LLEGKIDLLVSNPPYI  233 (328)
T ss_pred             EEEecccccccccccc-------------cccCceeEEecCCCcc
Confidence            8886543321100000             0124599999999995

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.06  E-value=1.6e-09  Score=99.82  Aligned_cols=107  Identities=18%  Similarity=0.224  Sum_probs=78.3

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-C--CEEEEEeCCHHHHHHHHHHHHH--hCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-G--AIVAANDLNPDSYAWLQASIRL--NERQVKTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g--~~V~avD~~~~a~~~a~~N~~~--n~~~l~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      +.++.+|||+|||+|.++..++++ +  ++|+|+|+|++|++.|+++...  .+  ...+++++++|+.++...      
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~--~~~~i~~~~~d~~~lp~~------  142 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS--CYKNIEWIEGDATDLPFD------  142 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc--cCCCeEEEEcccccCCCC------
Confidence            457889999999999999999874 3  4999999999999999887642  22  223799999998765321      


Q ss_pred             hhhcccCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCC
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMD  295 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~  295 (324)
                                  ...||.|+++     .|. ...++..+.. |++        ||.+.+..|.+.+.
T Consensus       143 ------------~~sfD~V~~~~~l~~~~d-~~~~l~ei~rvLkp--------GG~l~i~d~~~~~~  188 (261)
T PLN02233        143 ------------DCYFDAITMGYGLRNVVD-RLKAMQEMYRVLKP--------GSRVSILDFNKSTQ  188 (261)
T ss_pred             ------------CCCEeEEEEecccccCCC-HHHHHHHHHHHcCc--------CcEEEEEECCCCCc
Confidence                        1359999884     343 2345555544 665        48888888876543

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.05  E-value=1.5e-09  Score=104.46  Aligned_cols=102  Identities=16%  Similarity=0.230  Sum_probs=81.2

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .+..+||+|||+|.+++.+|++  ...++|+|+++.+++.|.+++..++  +. |+.++++|+..++....         
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g--L~-NV~~i~~DA~~ll~~~~---------  189 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN--LK-NLLIINYDARLLLELLP---------  189 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC--CC-cEEEEECCHHHhhhhCC---------
Confidence            4669999999999999999985  5699999999999999999999999  87 89999999987654321         


Q ss_pred             cCCCCCCCCcccEEEECChhh----------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        240 SEGNSTGGTAVARVIMNLPAT----------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~----------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                             ...+|.|+++.|.-          ...|+..+.. |+++        |.+++-+-
T Consensus       190 -------~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpG--------G~l~l~TD  236 (390)
T PRK14121        190 -------SNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPG--------GTLELRTD  236 (390)
T ss_pred             -------CCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCC--------cEEEEEEE
Confidence                   24599999998752          1356666665 6654        77776443

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.05  E-value=2.1e-09  Score=96.37  Aligned_cols=92  Identities=21%  Similarity=0.119  Sum_probs=66.9

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCC--------------CCCeEEEeccHHHHH
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQV--------------KTPISATQKDARDFL  226 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l--------------~~~v~~~~~D~~~~~  226 (324)
                      .++.+|||+|||.|.-++.+|++|+.|+|||+|+.|++.+..   .++  +              ..++++.++|+.++.
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~--l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~  110 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENG--LTPQTRQSGEFEHYQAGEITIYCGDFFALT  110 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcC--CCccccccccccccccCceEEEECcccCCC
Confidence            467899999999999999999999999999999999998742   222  2              136889999998763


Q ss_pred             HHHHHHhhhhhcccCCCCCCCCcccEEE-----EC-ChhhhHHHHHHHhc-cchh
Q psy16898        227 QTDARAHLVRWSQSEGNSTGGTAVARVI-----MN-LPATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vi-----~n-pP~~a~~~l~~~~~-l~~~  274 (324)
                      ...                 ...||.|+     +- ||..-..++..+.. |+++
T Consensus       111 ~~~-----------------~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg  148 (218)
T PRK13255        111 AAD-----------------LADVDAVYDRAALIALPEEMRERYVQQLAALLPAG  148 (218)
T ss_pred             ccc-----------------CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC
Confidence            321                 12377666     33 34444567777766 6654

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=99.05  E-value=8.6e-10  Score=104.98  Aligned_cols=81  Identities=28%  Similarity=0.310  Sum_probs=70.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC-----------------------------------------EEEEEeCCHHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA-----------------------------------------IVAANDLNPDSYA  198 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~-----------------------------------------~V~avD~~~~a~~  198 (324)
                      -.++..++|.+||+|+|.+.+|..+.                                         .++|+|+++.+++
T Consensus       189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~  268 (381)
T COG0116         189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE  268 (381)
T ss_pred             CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence            34678999999999999999998653                                         2779999999999


Q ss_pred             HHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        199 WLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       199 ~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      .|+.|++.-|  +.+.|+|..+|+.++....                  ..+|+||+|||+.
T Consensus       269 ~Ak~NA~~AG--v~d~I~f~~~d~~~l~~~~------------------~~~gvvI~NPPYG  310 (381)
T COG0116         269 GAKANARAAG--VGDLIEFKQADATDLKEPL------------------EEYGVVISNPPYG  310 (381)
T ss_pred             HHHHHHHhcC--CCceEEEEEcchhhCCCCC------------------CcCCEEEeCCCcc
Confidence            9999999999  9889999999999865432                  2499999999995

>PLN02476 O-methyltransferase

Probab=99.05  E-value=5.7e-09  Score=96.43  Aligned_cols=112  Identities=13%  Similarity=0.112  Sum_probs=86.3

Q ss_pred             HHHhhccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHH
Q psy16898        155 RVTKEVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDAR  231 (324)
Q Consensus       155 ~~~~~~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~  231 (324)
                      .++....+.++|||+|+|+|..++.+|+.   +.+|+++|.++++++.|++|++.+|  +.++++++.+|+.+.+.+...
T Consensus       111 ~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG--l~~~I~li~GdA~e~L~~l~~  188 (278)
T PLN02476        111 AMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG--VSHKVNVKHGLAAESLKSMIQ  188 (278)
T ss_pred             HHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHHHHh
Confidence            34445567889999999999999999982   4589999999999999999999999  988999999999999876532


Q ss_pred             HhhhhhcccCCCCCCCCcccEEEECChhhh-HHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        232 AHLVRWSQSEGNSTGGTAVARVIMNLPATA-VEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a-~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                      +.            ....||.|++|.+... ..+++.+.. +++        ||++.+.
T Consensus       189 ~~------------~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~--------GGvIV~D  227 (278)
T PLN02476        189 NG------------EGSSYDFAFVDADKRMYQDYFELLLQLVRV--------GGVIVMD  227 (278)
T ss_pred             cc------------cCCCCCEEEECCCHHHHHHHHHHHHHhcCC--------CcEEEEe
Confidence            10            0135999999998742 345555444 444        5766654

>KOG3420|consensus

Probab=99.04  E-value=2.1e-10  Score=94.40  Aligned_cols=87  Identities=24%  Similarity=0.274  Sum_probs=72.7

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      +|++++|||||+|.+++.++-.+. .|+|+|++|+|++.+.+|+....  +.  +.++++|..+....            
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfE--vq--idlLqcdildle~~------------  111 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFE--VQ--IDLLQCDILDLELK------------  111 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhh--hh--hheeeeeccchhcc------------
Confidence            789999999999999988887666 99999999999999999999877  64  78999998875443            


Q ss_pred             CCCCCCCCcccEEEECChhhhH------HHHHHHhc
Q psy16898        241 EGNSTGGTAVARVIMNLPATAV------EYVRYLKV  270 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP~~a~------~~l~~~~~  270 (324)
                            +..||.+|+|||....      +|+++...
T Consensus       112 ------~g~fDtaviNppFGTk~~~aDm~fv~~al~  141 (185)
T KOG3420|consen  112 ------GGIFDTAVINPPFGTKKKGADMEFVSAALK  141 (185)
T ss_pred             ------CCeEeeEEecCCCCcccccccHHHHHHHHH
Confidence                  3569999999998642      56666654

>PRK04266 fibrillarin; Provisional

Probab=99.04  E-value=2.1e-09  Score=96.90  Aligned_cols=100  Identities=18%  Similarity=0.122  Sum_probs=71.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.+|.+|||+|||+|.+++.+++..  .+|+|+|+++.|++.+.++++...     |+.++.+|+.+......   +   
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~-----nv~~i~~D~~~~~~~~~---l---  138 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERK-----NIIPILADARKPERYAH---V---  138 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcC-----CcEEEECCCCCcchhhh---c---
Confidence            4589999999999999999999853  489999999999999888876432     68899999864210000   0   


Q ss_pred             cccCCCCCCCCcccEEEECChhh--hHHHHHHHhc-cchhhcCCCCCCCEEEE
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPAT--AVEYVRYLKV-LTREEFGKLSRPPVLYL  287 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~--a~~~l~~~~~-l~~~~~~~~~~~g~vh~  287 (324)
                               ...||+|++|.+..  ...++..+.. |+++        |.+.+
T Consensus       139 ---------~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpG--------G~lvI  174 (226)
T PRK04266        139 ---------VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDG--------GYLLL  174 (226)
T ss_pred             ---------cccCCEEEECCCChhHHHHHHHHHHHhcCCC--------cEEEE
Confidence                     12499999987642  2234555544 6654        77665

>PHA03411 putative methyltransferase; Provisional

Probab=99.04  E-value=7.2e-10  Score=101.75  Aligned_cols=91  Identities=20%  Similarity=0.199  Sum_probs=68.0

Q ss_pred             ceeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEe
Q psy16898        142 KVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQ  219 (324)
Q Consensus       142 ~~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~  219 (324)
                      ..|+.|+.....  ++.....+.+|||+|||+|.+++.++++  +.+|+++|+|+.|++.+++|.       + ++++++
T Consensus        46 G~FfTP~~i~~~--f~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-------~-~v~~v~  115 (279)
T PHA03411         46 GAFFTPEGLAWD--FTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-------P-EAEWIT  115 (279)
T ss_pred             eeEcCCHHHHHH--HHhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------c-CCEEEE
Confidence            456666633322  1222334679999999999999999875  469999999999999998763       1 478999


Q ss_pred             ccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh
Q psy16898        220 KDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       220 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                      +|++++...                   .+||.||+|||...
T Consensus       116 ~D~~e~~~~-------------------~kFDlIIsNPPF~~  138 (279)
T PHA03411        116 SDVFEFESN-------------------EKFDVVISNPPFGK  138 (279)
T ss_pred             Cchhhhccc-------------------CCCcEEEEcCCccc
Confidence            999876421                   34999999999963

>TIGR00740 methyltransferase, putative

Probab=99.03  E-value=3.1e-09  Score=96.30  Aligned_cols=104  Identities=17%  Similarity=0.147  Sum_probs=76.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc----CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR----GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~----g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      +.++.+|||+|||+|.++..++++    +++|+|+|+|+.|++.|+++++..+  ...+++++++|+.++..        
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~--~~~~v~~~~~d~~~~~~--------  120 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH--SEIPVEILCNDIRHVEI--------  120 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECChhhCCC--------
Confidence            457889999999999999999873    5799999999999999999998765  44579999999986532        


Q ss_pred             hhcccCCCCCCCCcccEEEECCh------hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLP------ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP------~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                                  ..+|.|+++..      .....+++.+.. |++        ||.+.+......
T Consensus       121 ------------~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~Lkp--------gG~l~i~d~~~~  165 (239)
T TIGR00740       121 ------------KNASMVILNFTLQFLPPEDRIALLTKIYEGLNP--------NGVLVLSEKFRF  165 (239)
T ss_pred             ------------CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCC--------CeEEEEeecccC
Confidence                        12788877532      122345555544 555        477776654433

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK04457 spermidine synthase; Provisional

Probab=99.03  E-value=5.1e-09  Score=96.48  Aligned_cols=105  Identities=10%  Similarity=0.137  Sum_probs=81.4

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .++.+|||+|||.|.++..+++.  +.+|+++|++|.+++.|+++...++  ..++++++.+|+.+++...         
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~--~~~rv~v~~~Da~~~l~~~---------  133 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE--NGERFEVIEADGAEYIAVH---------  133 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC--CCCceEEEECCHHHHHHhC---------
Confidence            45679999999999999988874  5699999999999999999987665  4458999999999987642         


Q ss_pred             ccCCCCCCCCcccEEEECChhh--------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        239 QSEGNSTGGTAVARVIMNLPAT--------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~--------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                              ...||.|++|....        ..+|+..... |++        +|++.+..+..
T Consensus       134 --------~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~p--------gGvlvin~~~~  180 (262)
T PRK04457        134 --------RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSS--------DGIFVVNLWSR  180 (262)
T ss_pred             --------CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCC--------CcEEEEEcCCC
Confidence                    13599999985321        2467777666 665        48877755544

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.02  E-value=5.7e-10  Score=103.35  Aligned_cols=86  Identities=23%  Similarity=0.301  Sum_probs=67.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +.++++|||+|||+|.++..+++++.+|+|+|+++.+++.+++|+..      ++++++++|+.++....          
T Consensus        40 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~------~~v~~i~~D~~~~~~~~----------  103 (272)
T PRK00274         40 PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE------DNLTIIEGDALKVDLSE----------  103 (272)
T ss_pred             CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc------CceEEEEChhhcCCHHH----------
Confidence            45788999999999999999999888999999999999999887642      26999999998753221          


Q ss_pred             cCCCCCCCCcccEEEECChhhh-HHHHHHHh
Q psy16898        240 SEGNSTGGTAVARVIMNLPATA-VEYVRYLK  269 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a-~~~l~~~~  269 (324)
                              ..++.||.|||+.. ..++..+.
T Consensus       104 --------~~~~~vv~NlPY~iss~ii~~~l  126 (272)
T PRK00274        104 --------LQPLKVVANLPYNITTPLLFHLL  126 (272)
T ss_pred             --------cCcceEEEeCCccchHHHHHHHH
Confidence                    01589999999853 33444443

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.02  E-value=3.1e-09  Score=95.00  Aligned_cols=63  Identities=29%  Similarity=0.340  Sum_probs=57.0

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.++..|++++..++  ..+++.+.++|+.+.
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~  116 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRD--VAGNVEFEVNDLLSL  116 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChhhC
Confidence            468899999999999999999988899999999999999999998877  655799999998764

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>KOG1270|consensus

Probab=99.02  E-value=5.7e-10  Score=100.52  Aligned_cols=85  Identities=25%  Similarity=0.309  Sum_probs=66.5

Q ss_pred             CCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCC-----CeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        163 GDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKT-----PISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~-----~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      |.+|||+|||+|-++.++|+.|+.|+|+|+++.|++.|++..+.+-  ..+     ++++.+.|+.+..           
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP--~~~~~~~y~l~~~~~~~E~~~-----------  156 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDP--VLEGAIAYRLEYEDTDVEGLT-----------  156 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCc--hhccccceeeehhhcchhhcc-----------
Confidence            5789999999999999999999999999999999999999976654  322     3566666766532           


Q ss_pred             cccCCCCCCCCcccEEEE--------CChhhhHHHHHHHhc-cchh
Q psy16898        238 SQSEGNSTGGTAVARVIM--------NLPATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~--------npP~~a~~~l~~~~~-l~~~  274 (324)
                                ..||.|++        ||+    +|++++.. ++|+
T Consensus       157 ----------~~fDaVvcsevleHV~dp~----~~l~~l~~~lkP~  188 (282)
T KOG1270|consen  157 ----------GKFDAVVCSEVLEHVKDPQ----EFLNCLSALLKPN  188 (282)
T ss_pred             ----------cccceeeeHHHHHHHhCHH----HHHHHHHHHhCCC
Confidence                      23999988        344    37777766 6665

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.00  E-value=1e-09  Score=97.91  Aligned_cols=77  Identities=14%  Similarity=0.138  Sum_probs=65.0

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.+|++|||+|||+|.++..+++.   +++|+++|+++++++.+++|++.++  +. +++++++|+......        
T Consensus        74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g--~~-~v~~~~gd~~~~~~~--------  142 (212)
T PRK13942         74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG--YD-NVEVIVGDGTLGYEE--------  142 (212)
T ss_pred             CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CC-CeEEEECCcccCCCc--------
Confidence            568999999999999999988874   2599999999999999999999988  75 899999998754321        


Q ss_pred             hcccCCCCCCCCcccEEEECC
Q psy16898        237 WSQSEGNSTGGTAVARVIMNL  257 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~np  257 (324)
                                ...||.|+++-
T Consensus       143 ----------~~~fD~I~~~~  153 (212)
T PRK13942        143 ----------NAPYDRIYVTA  153 (212)
T ss_pred             ----------CCCcCEEEECC
Confidence                      13499999863

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.00  E-value=2.8e-09  Score=98.26  Aligned_cols=119  Identities=14%  Similarity=0.063  Sum_probs=81.0

Q ss_pred             eecCcChHHHHHHHhh--ccCCCEEEEEcCCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEec
Q psy16898        144 YWNSRLSTEHERVTKE--VREGDLVLDVFAGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQK  220 (324)
Q Consensus       144 f~~~r~~~e~~~~~~~--~~~g~~VLDl~~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~  220 (324)
                      |+.+.-......+++.  +.++.+|||+|||+|..+..+++ .+++|+|+|+++.+++.|++++...     +++.+.++
T Consensus        32 ~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~-----~~i~~~~~  106 (263)
T PTZ00098         32 YISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK-----NKIEFEAN  106 (263)
T ss_pred             CCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC-----CceEEEEC
Confidence            3444322233345554  46889999999999999999987 4679999999999999999876532     26899999


Q ss_pred             cHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECC-----h-hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        221 DARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNL-----P-ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       221 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~np-----P-~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                      |+.+....                  ...||+|++..     | .....++..+.. |++        ||.+.+..+...
T Consensus       107 D~~~~~~~------------------~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkP--------GG~lvi~d~~~~  160 (263)
T PTZ00098        107 DILKKDFP------------------ENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKP--------NGILLITDYCAD  160 (263)
T ss_pred             CcccCCCC------------------CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCC--------CcEEEEEEeccc
Confidence            98642111                  13599999842     2 123345555544 555        488776665443

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.98  E-value=2.6e-09  Score=95.05  Aligned_cols=100  Identities=17%  Similarity=0.078  Sum_probs=75.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++|++.++  +. ++++..+|+.+....           
T Consensus        76 ~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~--~~-~v~~~~~d~~~~~~~-----------  141 (212)
T PRK00312         76 LKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLG--LH-NVSVRHGDGWKGWPA-----------  141 (212)
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCC--CC-ceEEEECCcccCCCc-----------
Confidence            4578899999999999999888876799999999999999999999988  86 699999997543211           


Q ss_pred             cCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                             ...||.|+++.+..  .+.+.+.. |+        ++|.+.+...
T Consensus       142 -------~~~fD~I~~~~~~~--~~~~~l~~~L~--------~gG~lv~~~~  176 (212)
T PRK00312        142 -------YAPFDRILVTAAAP--EIPRALLEQLK--------EGGILVAPVG  176 (212)
T ss_pred             -------CCCcCEEEEccCch--hhhHHHHHhcC--------CCcEEEEEEc
Confidence                   13499999986542  22333333 44        4577766543

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.97  E-value=1.1e-08  Score=101.38  Aligned_cols=82  Identities=21%  Similarity=0.234  Sum_probs=70.0

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--C-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--G-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ..+|++|||+|||.|+-+.++|..  + ..|+|+|+++.-++.+++|+++.|  +. ++.+.+.|+..+....       
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G--~~-nv~v~~~D~~~~~~~~-------  180 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG--VS-NVALTHFDGRVFGAAL-------  180 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CC-eEEEEeCchhhhhhhc-------
Confidence            468999999999999999999983  2 489999999999999999999999  87 7999999998754322       


Q ss_pred             hcccCCCCCCCCcccEEEECChhhh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                                ...||.|++|+|.++
T Consensus       181 ----------~~~fD~ILvDaPCSG  195 (470)
T PRK11933        181 ----------PETFDAILLDAPCSG  195 (470)
T ss_pred             ----------hhhcCeEEEcCCCCC
Confidence                      124999999999863

>KOG2730|consensus

Probab=98.96  E-value=1.7e-09  Score=94.99  Aligned_cols=86  Identities=22%  Similarity=0.259  Sum_probs=73.1

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      ..++|+|.|||.|+-++..|.+++.|+++|++|.-+.+|++|++..|  ++++|+|++||..+....+..+         
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYG--I~~rItFI~GD~ld~~~~lq~~---------  162 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYG--VPDRITFICGDFLDLASKLKAD---------  162 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeec--CCceeEEEechHHHHHHHHhhh---------
Confidence            56789999999999999999999999999999999999999999999  9999999999999988776543         


Q ss_pred             CCCCCCCcccEEEECChhhhHH
Q psy16898        242 GNSTGGTAVARVIMNLPATAVE  263 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~npP~~a~~  263 (324)
                           ...+|.|.+-||-+..+
T Consensus       163 -----K~~~~~vf~sppwggp~  179 (263)
T KOG2730|consen  163 -----KIKYDCVFLSPPWGGPS  179 (263)
T ss_pred             -----hheeeeeecCCCCCCcc
Confidence                 12366777766654433

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.96  E-value=2.4e-09  Score=111.31  Aligned_cols=82  Identities=26%  Similarity=0.272  Sum_probs=68.7

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc--------------------------------------------CCEEEEEeCCHHH
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR--------------------------------------------GAIVAANDLNPDS  196 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~--------------------------------------------g~~V~avD~~~~a  196 (324)
                      .++..++|.|||+|+|.+++|..                                            ..+++|+|+++.|
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            56789999999999999999862                                            1269999999999


Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        197 YAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       197 ~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      ++.|++|+..++  +.+.+++.++|+.++.....                ...||.||+|||+.
T Consensus       269 v~~A~~N~~~~g--~~~~i~~~~~D~~~~~~~~~----------------~~~~d~IvtNPPYg  314 (702)
T PRK11783        269 IQAARKNARRAG--VAELITFEVKDVADLKNPLP----------------KGPTGLVISNPPYG  314 (702)
T ss_pred             HHHHHHHHHHcC--CCcceEEEeCChhhcccccc----------------cCCCCEEEECCCCc
Confidence            999999999999  98789999999988643211                13499999999994

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.96  E-value=4.3e-09  Score=82.46  Aligned_cols=86  Identities=22%  Similarity=0.253  Sum_probs=64.4

Q ss_pred             EEEEcCCCchhHHHHHhcC-----CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        166 VLDVFAGVGPFSIPAARRG-----AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       166 VLDl~~G~G~~al~~a~~g-----~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      |||+|||+|..+..+++..     .+++++|+|+.|++.++++.+..+  .  +++++++|+.++...            
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~--~--~~~~~~~D~~~l~~~------------   64 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG--P--KVRFVQADARDLPFS------------   64 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT--T--TSEEEESCTTCHHHH------------
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC--C--ceEEEECCHhHCccc------------
Confidence            7999999999999999863     799999999999999999998877  5  599999999885422            


Q ss_pred             CCCCCCCCcccEEEE-CC--hhh----hHHHHHHHhc-cch
Q psy16898        241 EGNSTGGTAVARVIM-NL--PAT----AVEYVRYLKV-LTR  273 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~-np--P~~----a~~~l~~~~~-l~~  273 (324)
                            ..+||+|++ ..  ...    ...+++.+.. +++
T Consensus        65 ------~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~p   99 (101)
T PF13649_consen   65 ------DGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRP   99 (101)
T ss_dssp             ------SSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEE
T ss_pred             ------CCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCC
Confidence                  246999999 33  222    3345665555 554

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.94  E-value=8.4e-09  Score=95.26  Aligned_cols=103  Identities=22%  Similarity=0.225  Sum_probs=76.2

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhc-C--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARR-G--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~-g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      .+.+|++|||+|||+|..++.+++. +  .+|+++|+++.+++.|++|...++  +. +++++.+|+.++...       
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g--~~-~v~~~~~d~~~l~~~-------  143 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG--YT-NVEFRLGEIEALPVA-------  143 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC--CC-CEEEEEcchhhCCCC-------
Confidence            3668999999999999998877763 3  389999999999999999999888  76 899999998653211       


Q ss_pred             hhcccCCCCCCCCcccEEEECC-----hhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNL-----PATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~np-----P~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                                 ...||.|++|.     |. ....+..+.. |++        ||.+.+..+.
T Consensus       144 -----------~~~fD~Vi~~~v~~~~~d-~~~~l~~~~r~Lkp--------GG~l~i~~~~  185 (272)
T PRK11873        144 -----------DNSVDVIISNCVINLSPD-KERVFKEAFRVLKP--------GGRFAISDVV  185 (272)
T ss_pred             -----------CCceeEEEEcCcccCCCC-HHHHHHHHHHHcCC--------CcEEEEEEee
Confidence                       13599999873     33 2234444433 665        4887776543

>PRK00811 spermidine synthase; Provisional

Probab=98.93  E-value=1.8e-08  Score=93.86  Aligned_cols=107  Identities=10%  Similarity=0.068  Sum_probs=78.5

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc-CC-EEEEEeCCHHHHHHHHHHHHHhCCCC--CCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR-GA-IVAANDLNPDSYAWLQASIRLNERQV--KTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~-g~-~V~avD~~~~a~~~a~~N~~~n~~~l--~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ...++||++|||.|.++..+++. +. +|++||+++.+++.|++++...+...  +.+++++.+|+++++...       
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-------  147 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET-------  147 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-------
Confidence            45679999999999999999885 44 99999999999999999886421002  247999999999987651       


Q ss_pred             hcccCCCCCCCCcccEEEECChh--h------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPA--T------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~--~------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                ..+||+|++|++.  .      ..+|+..++. |++        +|++.+..-++
T Consensus       148 ----------~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~--------gGvlv~~~~~~  194 (283)
T PRK00811        148 ----------ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKE--------DGIFVAQSGSP  194 (283)
T ss_pred             ----------CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCC--------CcEEEEeCCCc
Confidence                      2459999999532  1      2355555554 554        47777654433

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.93  E-value=7.6e-09  Score=94.39  Aligned_cols=109  Identities=19%  Similarity=0.064  Sum_probs=76.7

Q ss_pred             HHhhcc--CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHh
Q psy16898        156 VTKEVR--EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAH  233 (324)
Q Consensus       156 ~~~~~~--~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~  233 (324)
                      +++.+.  ++.+|||+|||+|.++..+++.|++|+++|+|+.+++.++++..        ...++++|+.++...     
T Consensus        34 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~--------~~~~~~~d~~~~~~~-----  100 (251)
T PRK10258         34 LLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA--------ADHYLAGDIESLPLA-----  100 (251)
T ss_pred             HHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC--------CCCEEEcCcccCcCC-----
Confidence            344443  46799999999999999999989999999999999999887532        245778888654211     


Q ss_pred             hhhhcccCCCCCCCCcccEEEECChhh----hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhH
Q psy16898        234 LVRWSQSEGNSTGGTAVARVIMNLPAT----AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLET  298 (324)
Q Consensus       234 ~~~~~~~~~~~~~~~~fD~Vi~npP~~----a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~  298 (324)
                                   ...||.|+++.+-.    ...++..+.. ++        ++|.+.+.+|....-.+.
T Consensus       101 -------------~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk--------~gG~l~~~~~~~~~~~el  149 (251)
T PRK10258        101 -------------TATFDLAWSNLAVQWCGNLSTALRELYRVVR--------PGGVVAFTTLVQGSLPEL  149 (251)
T ss_pred             -------------CCcEEEEEECchhhhcCCHHHHHHHHHHHcC--------CCeEEEEEeCCCCchHHH
Confidence                         13599999986532    1234444433 44        458888888877554433

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.92  E-value=2.8e-08  Score=88.18  Aligned_cols=107  Identities=15%  Similarity=0.130  Sum_probs=85.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ..+.++||++|||+|.-++.+|+.   +++|+++|.+++..+.|++|++..+  +.++++++.+|+.+++.....+.   
T Consensus        43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag--~~~~I~~~~gda~~~l~~l~~~~---  117 (205)
T PF01596_consen   43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG--LDDRIEVIEGDALEVLPELANDG---  117 (205)
T ss_dssp             HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT--GGGGEEEEES-HHHHHHHHHHTT---
T ss_pred             hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC--CCCcEEEEEeccHhhHHHHHhcc---
Confidence            446779999999999999999983   6799999999999999999999999  88899999999999998865421   


Q ss_pred             hcccCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                               ....||.|++|-... -..+++.+.. ++++        |+|.+.
T Consensus       118 ---------~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~g--------gvii~D  154 (205)
T PF01596_consen  118 ---------EEGQFDFVFIDADKRNYLEYFEKALPLLRPG--------GVIIAD  154 (205)
T ss_dssp             ---------TTTSEEEEEEESTGGGHHHHHHHHHHHEEEE--------EEEEEE
T ss_pred             ---------CCCceeEEEEcccccchhhHHHHHhhhccCC--------eEEEEc
Confidence                     013599999997664 3456666655 6654        777766

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.90  E-value=1.6e-08  Score=90.15  Aligned_cols=111  Identities=22%  Similarity=0.206  Sum_probs=74.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHH--HHHHHHhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFL--QTDARAHL  234 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~--~~~~~~~~  234 (324)
                      +.+|.+|||+|||+|.++..++++.   ..|+|+|+++           .+.  +. +++++++|+.+..  .+.... +
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----------~~~--~~-~v~~i~~D~~~~~~~~~i~~~-~  113 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----------MDP--IV-GVDFLQGDFRDELVLKALLER-V  113 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----------ccC--CC-CcEEEecCCCChHHHHHHHHH-h
Confidence            5788999999999999999998852   4899999998           134  54 5899999988742  221111 0


Q ss_pred             hhhcccCCCCCCCCcccEEEECC-hhhh--------------HHHHHHHhccchhhcCCCCCCCEEEEEEcccCCChhHH
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNL-PATA--------------VEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETK  299 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~np-P~~a--------------~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~~~~  299 (324)
                                 ....||+|++|+ |...              ...+..+..       .+++||.+.+..|......+..
T Consensus       114 -----------~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~-------~LkpGG~~vi~~~~~~~~~~~l  175 (209)
T PRK11188        114 -----------GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRD-------VLAPGGSFVVKVFQGEGFDEYL  175 (209)
T ss_pred             -----------CCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHH-------HcCCCCEEEEEEecCcCHHHHH
Confidence                       024599999987 3210              112222222       3446799999888887666555


Q ss_pred             hHhh
Q psy16898        300 KKIK  303 (324)
Q Consensus       300 ~~v~  303 (324)
                      ...+
T Consensus       176 ~~l~  179 (209)
T PRK11188        176 REIR  179 (209)
T ss_pred             HHHH
Confidence            5543

>PRK10742 putative methyltransferase; Provisional

Probab=98.89  E-value=1.1e-08  Score=92.42  Aligned_cols=84  Identities=17%  Similarity=0.107  Sum_probs=70.8

Q ss_pred             ccCCC--EEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh------CCCCCCCeEEEeccHHHHHHHHHH
Q psy16898        160 VREGD--LVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLN------ERQVKTPISATQKDARDFLQTDAR  231 (324)
Q Consensus       160 ~~~g~--~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n------~~~l~~~v~~~~~D~~~~~~~~~~  231 (324)
                      +++|.  +|||+++|+|..|+.+|.+|++|+++|.||.+...+++|++.-      +..+..+++++++|+.+++...  
T Consensus        84 lk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~--  161 (250)
T PRK10742         84 IKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI--  161 (250)
T ss_pred             CCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC--
Confidence            45777  9999999999999999999999999999999999999999873      2001137999999999998753  


Q ss_pred             HhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        232 AHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                     ...||+|.+|||+-
T Consensus       162 ---------------~~~fDVVYlDPMfp  175 (250)
T PRK10742        162 ---------------TPRPQVVYLDPMFP  175 (250)
T ss_pred             ---------------CCCCcEEEECCCCC
Confidence                           13499999999983

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.88  E-value=9.3e-09  Score=97.26  Aligned_cols=77  Identities=12%  Similarity=0.097  Sum_probs=64.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.++++|||+|||+|.+++.+++..   ..|+++|+++.+++.|++|++.++  ++ ++.++++|+.+.....       
T Consensus        78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g--~~-nV~~i~gD~~~~~~~~-------  147 (322)
T PRK13943         78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG--IE-NVIFVCGDGYYGVPEF-------  147 (322)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC--CC-cEEEEeCChhhccccc-------
Confidence            5688999999999999999999842   379999999999999999999998  86 7999999987654321       


Q ss_pred             hcccCCCCCCCCcccEEEECC
Q psy16898        237 WSQSEGNSTGGTAVARVIMNL  257 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~np  257 (324)
                                 ..||.|+++.
T Consensus       148 -----------~~fD~Ii~~~  157 (322)
T PRK13943        148 -----------APYDVIFVTV  157 (322)
T ss_pred             -----------CCccEEEECC
Confidence                       2499999963

>PTZ00146 fibrillarin; Provisional

Probab=98.87  E-value=2.4e-08  Score=92.64  Aligned_cols=115  Identities=17%  Similarity=0.094  Sum_probs=74.7

Q ss_pred             ecCcChHHHHHHHh-----hccCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeE
Q psy16898        145 WNSRLSTEHERVTK-----EVREGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPIS  216 (324)
Q Consensus       145 ~~~r~~~e~~~~~~-----~~~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~  216 (324)
                      |||.-+.--..++.     .++++.+|||+|||+|+++.++|+..   ..|+|+|+++.+.+.+.+-++..     .|+.
T Consensus       110 w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-----~NI~  184 (293)
T PTZ00146        110 WNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-----PNIV  184 (293)
T ss_pred             eCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----CCCE
Confidence            77764432222322     25689999999999999999999852   48999999998887666554421     2688


Q ss_pred             EEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChh--hhHHHHHHHhc-cchhhcCCCCCCCEEEE
Q psy16898        217 ATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPA--TAVEYVRYLKV-LTREEFGKLSRPPVLYL  287 (324)
Q Consensus       217 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~--~a~~~l~~~~~-l~~~~~~~~~~~g~vh~  287 (324)
                      ++.+|+..-.. ...  +            ...||+|++|...  .+..++..+.. |+++        |.+.+
T Consensus       185 ~I~~Da~~p~~-y~~--~------------~~~vDvV~~Dva~pdq~~il~~na~r~LKpG--------G~~vI  235 (293)
T PTZ00146        185 PIIEDARYPQK-YRM--L------------VPMVDVIFADVAQPDQARIVALNAQYFLKNG--------GHFII  235 (293)
T ss_pred             EEECCccChhh-hhc--c------------cCCCCEEEEeCCCcchHHHHHHHHHHhccCC--------CEEEE
Confidence            99999864211 000  0            1249999998642  22334444443 6654        77665

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.85  E-value=1.9e-08  Score=97.14  Aligned_cols=115  Identities=18%  Similarity=0.283  Sum_probs=82.8

Q ss_pred             cceeecCcChHHHHHHH------hhc----cCCCEEEEEcCCCchhHHHHHhc--CC-EEEEEeCCHHHHHHHHHHHHHh
Q psy16898        141 SKVYWNSRLSTEHERVT------KEV----REGDLVLDVFAGVGPFSIPAARR--GA-IVAANDLNPDSYAWLQASIRLN  207 (324)
Q Consensus       141 ~~~f~~~r~~~e~~~~~------~~~----~~g~~VLDl~~G~G~~al~~a~~--g~-~V~avD~~~~a~~~a~~N~~~n  207 (324)
                      ..+|+||.+...|...+      +..    ..+-++||..||+|.-|+..++.  +. +|+++|+|++|++.+++|++.|
T Consensus        18 ~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N   97 (377)
T PF02005_consen   18 APVFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN   97 (377)
T ss_dssp             SSSS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC
T ss_pred             CCcccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc
Confidence            34899999776665421      111    13448999999999999999985  44 9999999999999999999999


Q ss_pred             CCCCCC-CeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchh
Q psy16898        208 ERQVKT-PISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       208 ~~~l~~-~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~  274 (324)
                      +  +++ ++++.++||..++...                 ...||+|=+||=.++..|++++.. .+.+
T Consensus        98 ~--~~~~~~~v~~~DAn~ll~~~-----------------~~~fD~IDlDPfGSp~pfldsA~~~v~~g  147 (377)
T PF02005_consen   98 G--LEDERIEVSNMDANVLLYSR-----------------QERFDVIDLDPFGSPAPFLDSALQAVKDG  147 (377)
T ss_dssp             T---SGCCEEEEES-HHHHHCHS-----------------TT-EEEEEE--SS--HHHHHHHHHHEEEE
T ss_pred             c--ccCceEEEehhhHHHHhhhc-----------------cccCCEEEeCCCCCccHhHHHHHHHhhcC
Confidence            9  886 6999999999988521                 245999999998888899999977 6654

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.85  E-value=2.3e-08  Score=94.42  Aligned_cols=61  Identities=26%  Similarity=0.284  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCC----CCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQV----KTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l----~~~v~~~~~D~~~  224 (324)
                      ++.+|||+|||+|.+++.++++|++|+|+|+|+.|++.+++|++...  .    ..++++..+|+.+
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~--~~~~~~~~~~f~~~Dl~~  208 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEAL--AALPPEVLPKFEANDLES  208 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcc--cccccccceEEEEcchhh
Confidence            57899999999999999999999999999999999999999987642  1    1257888888754

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.84  E-value=1e-08  Score=93.89  Aligned_cols=90  Identities=24%  Similarity=0.385  Sum_probs=69.5

Q ss_pred             HHHhh--ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898        155 RVTKE--VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA  232 (324)
Q Consensus       155 ~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~  232 (324)
                      ++++.  +.++++|||+|||+|.++..+++++..|+++|+++.+++.+++++...     .+++++++|+.++...    
T Consensus        20 ~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~-----~~v~v~~~D~~~~~~~----   90 (253)
T TIGR00755        20 KIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLY-----ERLEVIEGDALKVDLP----   90 (253)
T ss_pred             HHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcC-----CcEEEEECchhcCChh----
Confidence            34443  457889999999999999999999889999999999999999877432     2799999999875432    


Q ss_pred             hhhhhcccCCCCCCCCccc---EEEECChhh-hHHHHHHHh
Q psy16898        233 HLVRWSQSEGNSTGGTAVA---RVIMNLPAT-AVEYVRYLK  269 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD---~Vi~npP~~-a~~~l~~~~  269 (324)
                                      .+|   .|+.|+|+. +..++..+.
T Consensus        91 ----------------~~d~~~~vvsNlPy~i~~~il~~ll  115 (253)
T TIGR00755        91 ----------------DFPKQLKVVSNLPYNISSPLIFKLL  115 (253)
T ss_pred             ----------------HcCCcceEEEcCChhhHHHHHHHHh
Confidence                            144   999999984 333444443

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.84  E-value=2.4e-08  Score=96.88  Aligned_cols=99  Identities=19%  Similarity=0.244  Sum_probs=72.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.+|.+|||+|||+|.+++.+++. |++|+|+|+|+.+++.|++++.  +  +  .+++..+|..+.     .       
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~--l--~v~~~~~D~~~l-----~-------  226 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--G--L--PVEIRLQDYRDL-----N-------  226 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--c--C--eEEEEECchhhc-----C-------
Confidence            468899999999999999999984 7899999999999999999884  4  4  378888887653     0       


Q ss_pred             ccCCCCCCCCcccEEEECCh------hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        239 QSEGNSTGGTAVARVIMNLP------ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP------~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                               ..||.|++...      .....++..+.. |++        +|.+.+.++...
T Consensus       227 ---------~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~Lkp--------GG~lvl~~i~~~  271 (383)
T PRK11705        227 ---------GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKP--------DGLFLLHTIGSN  271 (383)
T ss_pred             ---------CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCC--------CcEEEEEEccCC
Confidence                     24999987532      111245555544 555        477766665443

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.83  E-value=1.6e-08  Score=92.68  Aligned_cols=92  Identities=22%  Similarity=0.248  Sum_probs=66.8

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .++.+|||+|||+|.++..++++  +++|+|+|+|+.|++.|++    ++      ++++++|+.++..           
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~----~~------~~~~~~d~~~~~~-----------   86 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE----RG------VDARTGDVRDWKP-----------   86 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh----cC------CcEEEcChhhCCC-----------
Confidence            47889999999999999999986  6799999999999999864    23      5688899876521           


Q ss_pred             ccCCCCCCCCcccEEEECChhh----hHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        239 QSEGNSTGGTAVARVIMNLPAT----AVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~----a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                              ...||.|+++..-.    ...++..+.. |++        ||.+.+..
T Consensus        87 --------~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkp--------gG~l~~~~  126 (255)
T PRK14103         87 --------KPDTDVVVSNAALQWVPEHADLLVRWVDELAP--------GSWIAVQV  126 (255)
T ss_pred             --------CCCceEEEEehhhhhCCCHHHHHHHHHHhCCC--------CcEEEEEc
Confidence                    13499999975321    2334444433 555        47766543

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.83  E-value=3.7e-08  Score=88.30  Aligned_cols=60  Identities=33%  Similarity=0.392  Sum_probs=54.4

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccH
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDA  222 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~  222 (324)
                      .++.+|||+|||+|.++..+++.+..|+++|+|+.+++.|+++....+  +.+++.+..+|.
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~  121 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAG--LAGNITFEVGDL  121 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CccCcEEEEcCc
Confidence            467899999999999999999988899999999999999999998877  655799999993

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.81  E-value=1e-08  Score=78.12  Aligned_cols=84  Identities=24%  Similarity=0.277  Sum_probs=61.2

Q ss_pred             EEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCC
Q psy16898        167 LDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNST  245 (324)
Q Consensus       167 LDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~  245 (324)
                      ||+|||+|.++..++++ +.+|+++|+++.+++.++++....+      +.+.++|+.++...                 
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~------~~~~~~d~~~l~~~-----------------   57 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG------VSFRQGDAEDLPFP-----------------   57 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST------EEEEESBTTSSSS------------------
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC------chheeehHHhCccc-----------------
Confidence            89999999999999998 7799999999999999999776444      56999998876332                 


Q ss_pred             CCCcccEEEECChh----hhHHHHHHHhc-cchh
Q psy16898        246 GGTAVARVIMNLPA----TAVEYVRYLKV-LTRE  274 (324)
Q Consensus       246 ~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~  274 (324)
                       ...||+|+++---    ....++..+.. +|++
T Consensus        58 -~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~g   90 (95)
T PF08241_consen   58 -DNSFDVVFSNSVLHHLEDPEAALREIYRVLKPG   90 (95)
T ss_dssp             -TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEE
T ss_pred             -cccccccccccceeeccCHHHHHHHHHHHcCcC
Confidence             2459999886211    12345555554 7775

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK03612 spermidine synthase; Provisional

Probab=98.80  E-value=4.3e-08  Score=98.73  Aligned_cols=107  Identities=23%  Similarity=0.267  Sum_probs=78.5

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHH---hCCCCC-CCeEEEeccHHHHHHHHHHHhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRL---NERQVK-TPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~---n~~~l~-~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      ++.++|||+|||+|..+..+++.+  .+|+++|+++++++.+++|...   |+..++ .+++++++|+++++...     
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-----  370 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-----  370 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-----
Confidence            467899999999999999998864  5999999999999999996432   210022 37999999999987642     


Q ss_pred             hhhcccCCCCCCCCcccEEEECChhhh---------HHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNLPATA---------VEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~npP~~a---------~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                  ..+||+|++|+|...         .+|.+.++. |++        +|.+.+...++
T Consensus       371 ------------~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p--------gG~lv~~~~~~  418 (521)
T PRK03612        371 ------------AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP--------DGLLVVQSTSP  418 (521)
T ss_pred             ------------CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCC--------CeEEEEecCCc
Confidence                        135999999987531         246666555 555        47776654433

>PRK06922 hypothetical protein; Provisional

Probab=98.80  E-value=7.2e-08  Score=97.78  Aligned_cols=79  Identities=15%  Similarity=0.121  Sum_probs=62.8

Q ss_pred             cCCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .++.+|||+|||+|.++..+++  .+.+|+|+|+|+.|++.|++++..++  .  ++.++++|+.++.... .       
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~--~ie~I~gDa~dLp~~f-e-------  484 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--R--SWNVIKGDAINLSSSF-E-------  484 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--C--CeEEEEcchHhCcccc-C-------
Confidence            3688999999999999988887  35699999999999999999887655  3  5889999988743211 1       


Q ss_pred             ccCCCCCCCCcccEEEECChh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPA  259 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~  259 (324)
                              ...||.|+++++.
T Consensus       485 --------deSFDvVVsn~vL  497 (677)
T PRK06922        485 --------KESVDTIVYSSIL  497 (677)
T ss_pred             --------CCCEEEEEEchHH
Confidence                    2359999998643

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.78  E-value=5.8e-08  Score=96.75  Aligned_cols=102  Identities=15%  Similarity=0.108  Sum_probs=74.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.++.+|||+|||+|.+++.+++. +++|+|+|+|+.+++.|++|+..    ...++++.++|+.+....          
T Consensus       264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~----~~~~v~~~~~d~~~~~~~----------  329 (475)
T PLN02336        264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG----RKCSVEFEVADCTKKTYP----------  329 (475)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc----CCCceEEEEcCcccCCCC----------
Confidence            357889999999999999999884 77999999999999999998863    334799999998753211          


Q ss_pred             ccCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        239 QSEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                              ...||+|++.     .|. ...++..+.. |++        ||.+.+..+..
T Consensus       330 --------~~~fD~I~s~~~l~h~~d-~~~~l~~~~r~Lkp--------gG~l~i~~~~~  372 (475)
T PLN02336        330 --------DNSFDVIYSRDTILHIQD-KPALFRSFFKWLKP--------GGKVLISDYCR  372 (475)
T ss_pred             --------CCCEEEEEECCcccccCC-HHHHHHHHHHHcCC--------CeEEEEEEecc
Confidence                    1359999985     122 2345555554 665        47777665554

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.78  E-value=2.9e-08  Score=88.85  Aligned_cols=98  Identities=18%  Similarity=0.120  Sum_probs=74.0

Q ss_pred             CEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        164 DLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      ++|||+|||+|.++..+++.  +++|+|+|+|+.+++.+++++...+  +.++++++.+|+.+...              
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g--l~~~i~~~~~d~~~~~~--------------   64 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG--LQGRIRIFYRDSAKDPF--------------   64 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CCcceEEEecccccCCC--------------
Confidence            37999999999999999985  4699999999999999999999888  87789999999754311              


Q ss_pred             CCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        242 GNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                           ...||+|++.     .+. ...++..+.. |++        +|.+.+..+.
T Consensus        65 -----~~~fD~I~~~~~l~~~~~-~~~~l~~~~~~Lkp--------gG~l~i~~~~  106 (224)
T smart00828       65 -----PDTYDLVFGFEVIHHIKD-KMDLFSNISRHLKD--------GGHLVLADFI  106 (224)
T ss_pred             -----CCCCCEeehHHHHHhCCC-HHHHHHHHHHHcCC--------CCEEEEEEcc
Confidence                 1249999863     122 2346666655 665        4777766543

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.78  E-value=6.2e-08  Score=86.92  Aligned_cols=103  Identities=22%  Similarity=0.233  Sum_probs=76.3

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      .++.+|||+|||+|.++..+++.+   .+|+++|+++.+++.+++++..++  +..++.++.+|+.+....         
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~---------  118 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG--LSGNVEFVQGDAEALPFP---------  118 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc--cccCeEEEecccccCCCC---------
Confidence            367899999999999999999865   699999999999999999998776  655799999998764311         


Q ss_pred             cccCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        238 SQSEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                               ...||.|+++     .+. ...++..+.. +++        +|.+.+..+..
T Consensus       119 ---------~~~~D~I~~~~~l~~~~~-~~~~l~~~~~~L~~--------gG~li~~~~~~  161 (239)
T PRK00216        119 ---------DNSFDAVTIAFGLRNVPD-IDKALREMYRVLKP--------GGRLVILEFSK  161 (239)
T ss_pred             ---------CCCccEEEEecccccCCC-HHHHHHHHHHhccC--------CcEEEEEEecC
Confidence                     1359999874     222 2345555555 554        47766555443

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.78  E-value=3.4e-08  Score=90.43  Aligned_cols=95  Identities=18%  Similarity=0.162  Sum_probs=68.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.++.+|||+|||+|.++..+++.  +++|+|+|+|+.+++.|+++.       + ++.++.+|+.++..          
T Consensus        29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-------~-~~~~~~~d~~~~~~----------   90 (258)
T PRK01683         29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-------P-DCQFVEADIASWQP----------   90 (258)
T ss_pred             CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-------C-CCeEEECchhccCC----------
Confidence            357889999999999999999985  579999999999999998653       2 47889999876432          


Q ss_pred             cccCCCCCCCCcccEEEECChhh----hHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPAT----AVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~----a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                               ...||.|+++..-.    ...++..+.. |++        ||.+.+.+
T Consensus        91 ---------~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkp--------gG~~~~~~  130 (258)
T PRK01683         91 ---------PQALDLIFANASLQWLPDHLELFPRLVSLLAP--------GGVLAVQM  130 (258)
T ss_pred             ---------CCCccEEEEccChhhCCCHHHHHHHHHHhcCC--------CcEEEEEC
Confidence                     13499999985421    2234444433 454        57776643

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=6.7e-08  Score=92.82  Aligned_cols=86  Identities=27%  Similarity=0.428  Sum_probs=71.9

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhc----CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARR----GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~----g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      ...+|++|||+|++.|+-+.++|..    |..|+|+|.++.-++.+++|+++-|  +. ++..++.|+..+......   
T Consensus       153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG--~~-nv~~~~~d~~~~~~~~~~---  226 (355)
T COG0144         153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG--VR-NVIVVNKDARRLAELLPG---  226 (355)
T ss_pred             CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC--CC-ceEEEecccccccccccc---
Confidence            3568999999999999999999983    4578999999999999999999999  87 689999998876544221   


Q ss_pred             hhhcccCCCCCCCCcccEEEECChhhhH
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNLPATAV  262 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~npP~~a~  262 (324)
                                  ...||.|++|+|.++.
T Consensus       227 ------------~~~fD~iLlDaPCSg~  242 (355)
T COG0144         227 ------------GEKFDRILLDAPCSGT  242 (355)
T ss_pred             ------------cCcCcEEEECCCCCCC
Confidence                        1249999999999754

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.77  E-value=2.7e-08  Score=88.58  Aligned_cols=78  Identities=17%  Similarity=0.250  Sum_probs=62.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-C--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-G--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +++|++|||+|||+|+++..+|.. |  .+|+++|.++..++.|++|+...+  +. ++.++++|+.......       
T Consensus        70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~--~~-nv~~~~gdg~~g~~~~-------  139 (209)
T PF01135_consen   70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG--ID-NVEVVVGDGSEGWPEE-------  139 (209)
T ss_dssp             C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT--TH-SEEEEES-GGGTTGGG-------
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc--cC-ceeEEEcchhhccccC-------
Confidence            679999999999999999999983 3  379999999999999999999998  76 8999999987654432       


Q ss_pred             hcccCCCCCCCCcccEEEECCh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLP  258 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP  258 (324)
                                 ..||.|+++..
T Consensus       140 -----------apfD~I~v~~a  150 (209)
T PF01135_consen  140 -----------APFDRIIVTAA  150 (209)
T ss_dssp             ------------SEEEEEESSB
T ss_pred             -----------CCcCEEEEeec
Confidence                       23999999743

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=4.5e-08  Score=86.28  Aligned_cols=81  Identities=16%  Similarity=0.173  Sum_probs=69.9

Q ss_pred             HHHhh--ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898        155 RVTKE--VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA  232 (324)
Q Consensus       155 ~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~  232 (324)
                      ++++.  +++|++||++|||+|+.+..+|+...+|+++|..+...+.|++|++..+  +. |+.+.++|........   
T Consensus        63 ~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg--~~-nV~v~~gDG~~G~~~~---  136 (209)
T COG2518          63 RMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLG--YE-NVTVRHGDGSKGWPEE---  136 (209)
T ss_pred             HHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcC--CC-ceEEEECCcccCCCCC---
Confidence            44443  6799999999999999999999987799999999999999999999999  87 6999999988754432   


Q ss_pred             hhhhhcccCCCCCCCCcccEEEEC
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMN  256 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~n  256 (324)
                                     ..||.|+..
T Consensus       137 ---------------aPyD~I~Vt  145 (209)
T COG2518         137 ---------------APYDRIIVT  145 (209)
T ss_pred             ---------------CCcCEEEEe
Confidence                           349999886

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.76  E-value=2e-08  Score=87.22  Aligned_cols=77  Identities=19%  Similarity=0.186  Sum_probs=62.6

Q ss_pred             HHHHhhccCCCEEEEEcCCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898        154 ERVTKEVREGDLVLDVFAGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA  232 (324)
Q Consensus       154 ~~~~~~~~~g~~VLDl~~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~  232 (324)
                      ..+.+.+.+|.+|||||||.|.+...+.. +++.++|+|++++.+..+.    .+|      +.++++|+.+.+....  
T Consensus         5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv----~rG------v~Viq~Dld~gL~~f~--   72 (193)
T PF07021_consen    5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV----ARG------VSVIQGDLDEGLADFP--   72 (193)
T ss_pred             HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH----HcC------CCEEECCHHHhHhhCC--
Confidence            34677899999999999999999988887 7889999999999876653    345      5689999998766532  


Q ss_pred             hhhhhcccCCCCCCCCcccEEEEC
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMN  256 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~n  256 (324)
                                    ...||.|||+
T Consensus        73 --------------d~sFD~VIls   82 (193)
T PF07021_consen   73 --------------DQSFDYVILS   82 (193)
T ss_pred             --------------CCCccEEehH
Confidence                          2469999996

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.75  E-value=6.2e-08  Score=91.88  Aligned_cols=100  Identities=20%  Similarity=0.094  Sum_probs=69.5

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      +|++|||+|||+|.++..++..|+ .|+|+|.|+.++..++...+..+  ...++.++.+|+.++..             
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~--~~~~i~~~~~d~e~lp~-------------  186 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG--NDQRAHLLPLGIEQLPA-------------  186 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC--CCCCeEEEeCCHHHCCC-------------
Confidence            688999999999999999999876 79999999998876554433322  23379999999876532             


Q ss_pred             CCCCCCCCcccEEEECC-h-h--hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        241 EGNSTGGTAVARVIMNL-P-A--TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~np-P-~--~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                            ...||.|++.- - .  ....++..+.. |++        ||.+.+.++
T Consensus       187 ------~~~FD~V~s~~vl~H~~dp~~~L~~l~~~Lkp--------GG~lvl~~~  227 (322)
T PRK15068        187 ------LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVP--------GGELVLETL  227 (322)
T ss_pred             ------cCCcCEEEECChhhccCCHHHHHHHHHHhcCC--------CcEEEEEEE
Confidence                  13499998841 1 0  12345555544 555        476665543

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.75  E-value=1.1e-07  Score=84.90  Aligned_cols=101  Identities=21%  Similarity=0.198  Sum_probs=76.2

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      .+.+|||+|||+|.++..+++.++.|+++|+++.+++.+++++..++  +. ++.+..+|+.++....            
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~--~~-~~~~~~~d~~~~~~~~------------  109 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDP--LL-KIEYRCTSVEDLAEKG------------  109 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcC--CC-ceEEEeCCHHHhhcCC------------
Confidence            47899999999999999999988899999999999999999999887  64 5889999988765431            


Q ss_pred             CCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        242 GNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                           ...||.|+++-.-    ....++..+.. +++        +|.+.+...
T Consensus       110 -----~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~--------gG~l~i~~~  150 (224)
T TIGR01983       110 -----AKSFDVVTCMEVLEHVPDPQAFIRACAQLLKP--------GGILFFSTI  150 (224)
T ss_pred             -----CCCccEEEehhHHHhCCCHHHHHHHHHHhcCC--------CcEEEEEec
Confidence                 1359999886211    12345555554 444        476665543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.75  E-value=5.7e-08  Score=73.90  Aligned_cols=86  Identities=17%  Similarity=0.264  Sum_probs=65.7

Q ss_pred             EEEEEcCCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCC
Q psy16898        165 LVLDVFAGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGN  243 (324)
Q Consensus       165 ~VLDl~~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~  243 (324)
                      +++|+|||+|.++..+++ .+.+++++|+++.++..++++...+.  .. +++++.+|+.+.....              
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~--------------   63 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL--AD-NVEVLKGDAEELPPEA--------------   63 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc--cc-ceEEEEcChhhhcccc--------------
Confidence            489999999999999998 55699999999999999987555444  33 7999999998865410              


Q ss_pred             CCCCCcccEEEECChhhh-----HHHHHHHhc
Q psy16898        244 STGGTAVARVIMNLPATA-----VEYVRYLKV  270 (324)
Q Consensus       244 ~~~~~~fD~Vi~npP~~a-----~~~l~~~~~  270 (324)
                         ...+|.|++++|...     ..++..+..
T Consensus        64 ---~~~~d~i~~~~~~~~~~~~~~~~l~~~~~   92 (107)
T cd02440          64 ---DESFDVIISDPPLHHLVEDLARFLEEARR   92 (107)
T ss_pred             ---CCceEEEEEccceeehhhHHHHHHHHHHH
Confidence               235999999998754     344544444

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK01581 speE spermidine synthase; Validated

Probab=98.75  E-value=8.4e-08  Score=91.43  Aligned_cols=106  Identities=18%  Similarity=0.173  Sum_probs=77.0

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHH---HhCCCC-CCCeEEEeccHHHHHHHHHHHh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIR---LNERQV-KTPISATQKDARDFLQTDARAH  233 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~---~n~~~l-~~~v~~~~~D~~~~~~~~~~~~  233 (324)
                      ....++||++|||.|..+..+++..  .+|++||+++++++.|++.-.   .|+..+ +.+++++.+|+.+++...    
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~----  223 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP----  223 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc----
Confidence            3456799999999999988888854  599999999999999996311   121002 248999999999988652    


Q ss_pred             hhhhcccCCCCCCCCcccEEEECChhh---------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        234 LVRWSQSEGNSTGGTAVARVIMNLPAT---------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       234 ~~~~~~~~~~~~~~~~fD~Vi~npP~~---------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                                   ...||+|++|+|..         ..+|+..++. |++        +|++.+-.-
T Consensus       224 -------------~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP--------gGV~V~Qs~  269 (374)
T PRK01581        224 -------------SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTE--------DGAFVCQSN  269 (374)
T ss_pred             -------------CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCC--------CcEEEEecC
Confidence                         23599999998652         1356666655 665        477766543

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=3.1e-08  Score=90.34  Aligned_cols=84  Identities=23%  Similarity=0.336  Sum_probs=68.8

Q ss_pred             HHHh--hccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898        155 RVTK--EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA  232 (324)
Q Consensus       155 ~~~~--~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~  232 (324)
                      ++++  .+.+++.||++|+|.|.++..+++++++|+|+|+++..++.+++....    . ++++++++|+..+-..... 
T Consensus        21 kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~----~-~n~~vi~~DaLk~d~~~l~-   94 (259)
T COG0030          21 KIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP----Y-DNLTVINGDALKFDFPSLA-   94 (259)
T ss_pred             HHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc----c-cceEEEeCchhcCcchhhc-
Confidence            4544  356789999999999999999999999999999999999999887652    2 3899999999876433110 


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                      .++.||.|+|+.
T Consensus        95 ----------------~~~~vVaNlPY~  106 (259)
T COG0030          95 ----------------QPYKVVANLPYN  106 (259)
T ss_pred             ----------------CCCEEEEcCCCc
Confidence                            389999999995

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.74  E-value=8.9e-08  Score=84.43  Aligned_cols=99  Identities=22%  Similarity=0.298  Sum_probs=77.5

Q ss_pred             CEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        164 DLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      ..+||+|||.|.+.+.+|+  ....++|+|+....+..+...+...+  ++ |+.++++|+..++.....          
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~--l~-Nv~~~~~da~~~l~~~~~----------   85 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG--LK-NVRFLRGDARELLRRLFP----------   85 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT--TS-SEEEEES-CTTHHHHHST----------
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc--cc-ceEEEEccHHHHHhhccc----------
Confidence            3899999999999999998  46799999999999999999999998  87 999999999998776533          


Q ss_pred             CCCCCCCcccEEEECChhh------------hHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        242 GNSTGGTAVARVIMNLPAT------------AVEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~npP~~------------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                           ...+|.|.++-|+-            ..+|++.+.. |+++        |.|++-
T Consensus        86 -----~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~g--------G~l~~~  132 (195)
T PF02390_consen   86 -----PGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPG--------GELYFA  132 (195)
T ss_dssp             -----TTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEE--------EEEEEE
T ss_pred             -----CCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCC--------CEEEEE
Confidence                 24599999987761            2368888877 7775        777543

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR03438 probable methyltransferase

Probab=98.74  E-value=1.6e-07  Score=88.30  Aligned_cols=69  Identities=12%  Similarity=0.050  Sum_probs=56.2

Q ss_pred             HHhhccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHH
Q psy16898        156 VTKEVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFL  226 (324)
Q Consensus       156 ~~~~~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~  226 (324)
                      +++.+.++.+|||+|||+|.++..+++.   +.+|+++|+|++|++.+++++....  -.-++.++++|..+..
T Consensus        57 ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~--p~~~v~~i~gD~~~~~  128 (301)
T TIGR03438        57 IAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY--PQLEVHGICADFTQPL  128 (301)
T ss_pred             HHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC--CCceEEEEEEcccchh
Confidence            4455667889999999999999999986   5799999999999999999987532  1124788999987653

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR00452 methyltransferase, putative

Probab=98.72  E-value=1.1e-07  Score=89.69  Aligned_cols=100  Identities=19%  Similarity=0.106  Sum_probs=69.7

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .+|++|||+|||+|.++..++..|+ .|+|+|.|+.++..++...+.-+  ...++.+..+++.++...           
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~--~~~~v~~~~~~ie~lp~~-----------  186 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD--NDKRAILEPLGIEQLHEL-----------  186 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc--cCCCeEEEECCHHHCCCC-----------
Confidence            4688999999999999999999887 89999999999887644333222  223688888887664321           


Q ss_pred             cCCCCCCCCcccEEEECC-----hhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        240 SEGNSTGGTAVARVIMNL-----PATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~np-----P~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                              ..||.|+++-     +. ...++..+.. |+++        |.+.+.++
T Consensus       187 --------~~FD~V~s~gvL~H~~d-p~~~L~el~r~LkpG--------G~Lvletl  226 (314)
T TIGR00452       187 --------YAFDTVFSMGVLYHRKS-PLEHLKQLKHQLVIK--------GELVLETL  226 (314)
T ss_pred             --------CCcCEEEEcchhhccCC-HHHHHHHHHHhcCCC--------CEEEEEEE
Confidence                    2499998762     22 3345665555 6654        77665544

Known examples to date are restricted to the proteobacteria.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.72  E-value=7e-08  Score=85.70  Aligned_cols=60  Identities=15%  Similarity=0.049  Sum_probs=49.4

Q ss_pred             HhhccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        157 TKEVREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       157 ~~~~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      +..+.++.+|||+|||+|.++..+++.  +++|+|+|+|+.|++.|+++..        ++.+.++|+.+
T Consensus        38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~--------~~~~~~~d~~~   99 (204)
T TIGR03587        38 LNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP--------NINIIQGSLFD   99 (204)
T ss_pred             HHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC--------CCcEEEeeccC
Confidence            344567889999999999999999885  5799999999999999987531        35677888765

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>KOG3191|consensus

Probab=98.71  E-value=3.2e-07  Score=78.64  Aligned_cols=120  Identities=23%  Similarity=0.248  Sum_probs=88.5

Q ss_pred             CCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        163 GDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .+.++++|||+|..+-.+++.   ++...|.|+||.|++..++.++.|+  .  ++..++.|....+..           
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~--~--~~~~V~tdl~~~l~~-----------  108 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR--V--HIDVVRTDLLSGLRN-----------  108 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC--C--ccceeehhHHhhhcc-----------
Confidence            678999999999999999983   3578999999999999999999999  6  488999998887665           


Q ss_pred             cCCCCCCCCcccEEEECChhhhH-------HHHH-HHhc-cchhh-----c----CCCCCCCEEEEEEcccCCChhHHhH
Q psy16898        240 SEGNSTGGTAVARVIMNLPATAV-------EYVR-YLKV-LTREE-----F----GKLSRPPVLYLYCFLPKMDLETKKK  301 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a~-------~~l~-~~~~-l~~~~-----~----~~~~~~g~vh~y~f~~~~~~~~~~~  301 (324)
                              .+.|+++.|||+-..       +.+. +..+ ..+..     +    ..+++.|+++.-....+...+..+.
T Consensus       109 --------~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~  180 (209)
T KOG3191|consen  109 --------ESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKI  180 (209)
T ss_pred             --------CCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHH
Confidence                    349999999999421       1111 1111 11110     1    1245678988888888877777776


Q ss_pred             hhhc
Q psy16898        302 IKSY  305 (324)
Q Consensus       302 v~~y  305 (324)
                      ++++
T Consensus       181 l~~~  184 (209)
T KOG3191|consen  181 LEKK  184 (209)
T ss_pred             Hhhc
Confidence            6554

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.70  E-value=2.1e-07  Score=80.51  Aligned_cols=123  Identities=27%  Similarity=0.259  Sum_probs=73.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      ..++.+||+||||+|..|+.+|+.  +++|++-|.++ +++.++.|++.|+.....++++...|..+-......+     
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~-----  116 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLE-----  116 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-----
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccc-----
Confidence            457889999999999999999997  55999999999 9999999999986212346777777754422111110     


Q ss_pred             cccCCCCCCCCcccEEEE-CC---hhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhHhhh
Q psy16898        238 SQSEGNSTGGTAVARVIM-NL---PATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKS  304 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~-np---P~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~  304 (324)
                               ...||+|+. |.   +.....++..+.. +++.       +.++.+|..+...+..+-+.+++
T Consensus       117 ---------~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~-------~~vl~~~~~R~~~~~~F~~~~~k  172 (173)
T PF10294_consen  117 ---------PHSFDVILASDVLYDEELFEPLVRTLKRLLKPN-------GKVLLAYKRRRKSEQEFFDRLKK  172 (173)
T ss_dssp             ----------SSBSEEEEES--S-GGGHHHHHHHHHHHBTT--------TTEEEEEE-S-TGGCHHHHHH--
T ss_pred             ---------cccCCEEEEecccchHHHHHHHHHHHHHHhCCC-------CEEEEEeCEecHHHHHHHHHhhh
Confidence                     235998876 43   3334557777766 5543       34677777776666666666543

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>TIGR00417 speE spermidine synthase

Probab=98.69  E-value=2.2e-07  Score=86.01  Aligned_cols=106  Identities=13%  Similarity=0.121  Sum_probs=78.0

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCC-CCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVK-TPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .+++||++|||+|.++..+++..  .+|+++|+++.+++.+++++...+..+. .+++++.+|+++++...         
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~---------  142 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT---------  142 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC---------
Confidence            45699999999999999888864  4899999999999999998754320021 37899999999988653         


Q ss_pred             ccCCCCCCCCcccEEEECChhh--------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        239 QSEGNSTGGTAVARVIMNLPAT--------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~--------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                              ...||+||+|++..        ..+|++.+.. |++        +|++.+...++
T Consensus       143 --------~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~p--------gG~lv~~~~~~  189 (270)
T TIGR00417       143 --------ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNE--------DGIFVAQSESP  189 (270)
T ss_pred             --------CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCC--------CcEEEEcCCCc
Confidence                    13599999998731        2456666655 555        47777654333

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.69  E-value=1.1e-07  Score=89.45  Aligned_cols=102  Identities=11%  Similarity=0.063  Sum_probs=76.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.++.+|||+|||+|.+++.++++  +.+++++|. |.+++.+++|+...+  +.++++++.+|+.+...          
T Consensus       147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g--l~~rv~~~~~d~~~~~~----------  213 (306)
T TIGR02716       147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG--VADRMRGIAVDIYKESY----------  213 (306)
T ss_pred             CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC--ccceEEEEecCccCCCC----------
Confidence            457789999999999999999985  469999997 899999999999988  87789999999874211          


Q ss_pred             cccCCCCCCCCcccEEEE-C-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        238 SQSEGNSTGGTAVARVIM-N-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~-n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                ..+|.|++ +     .+.....++..+.. |++        ||.+.++.+..
T Consensus       214 ----------~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~p--------gG~l~i~d~~~  257 (306)
T TIGR02716       214 ----------PEADAVLFCRILYSANEQLSTIMCKKAFDAMRS--------GGRLLILDMVI  257 (306)
T ss_pred             ----------CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCC--------CCEEEEEEecc
Confidence                      12687654 2     12223445555544 665        48888887644

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.69  E-value=1.9e-07  Score=83.98  Aligned_cols=136  Identities=9%  Similarity=0.036  Sum_probs=90.5

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH-------hC-CC-CCCCeEEEeccHHHHHHHHHH
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRL-------NE-RQ-VKTPISATQKDARDFLQTDAR  231 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~-------n~-~~-l~~~v~~~~~D~~~~~~~~~~  231 (324)
                      .++.+||+.+||.|.-++.+|.+|.+|+|+|+|+.|++.+.+....       +. .. -..+++++++|++++..... 
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~-  120 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN-  120 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc-
Confidence            3578999999999999999999999999999999999998652110       00 00 01368999999998632100 


Q ss_pred             HhhhhhcccCCCCCCCCcccEEEE------CChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCC---h----h
Q psy16898        232 AHLVRWSQSEGNSTGGTAVARVIM------NLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMD---L----E  297 (324)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~fD~Vi~------npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~---~----~  297 (324)
                                    ....||.|+-      =||.....+.+.+.. +++        +|.+++.+|.....   +    .
T Consensus       121 --------------~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p--------gg~llll~~~~~~~~~GPPf~v~  178 (226)
T PRK13256        121 --------------NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN--------NTQILLLVMEHDKKSQTPPYSVT  178 (226)
T ss_pred             --------------ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC--------CcEEEEEEEecCCCCCCCCCcCC
Confidence                          0124776532      266666677777776 555        47787777754321   1    2


Q ss_pred             HHhHhhhcCCCceEEEEeeccc
Q psy16898        298 TKKKIKSYDPSYATLIRGIRRL  319 (324)
Q Consensus       298 ~~~~v~~y~~~~~~~i~~~~~~  319 (324)
                      ..+..+.|.+...+..+..+..
T Consensus       179 ~~e~~~lf~~~~~i~~l~~~~~  200 (226)
T PRK13256        179 QAELIKNFSAKIKFELIDSKQR  200 (226)
T ss_pred             HHHHHHhccCCceEEEeeeccc
Confidence            2344456888888777765543

>PLN02366 spermidine synthase

Probab=98.68  E-value=2.9e-07  Score=86.66  Aligned_cols=98  Identities=12%  Similarity=0.070  Sum_probs=74.7

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHHhCCCCC-CCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR-G-AIVAANDLNPDSYAWLQASIRLNERQVK-TPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~-g-~~V~avD~~~~a~~~a~~N~~~n~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      .+.++||++|||.|..+..+++. + .+|+.+|+++.+++.+++.....+..++ .+++++.+|+++++.+..       
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~-------  162 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP-------  162 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-------
Confidence            46789999999999999999985 3 4899999999999999998754210032 389999999999987531       


Q ss_pred             cccCCCCCCCCcccEEEECChh--------hhHHHHHHHhc-cchh
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPA--------TAVEYVRYLKV-LTRE  274 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~--------~a~~~l~~~~~-l~~~  274 (324)
                               ...||+|++|.+.        ...+|++.+.. |+++
T Consensus       163 ---------~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pg  199 (308)
T PLN02366        163 ---------EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPG  199 (308)
T ss_pred             ---------CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence                     1359999999654        13467766665 6654

>PRK05785 hypothetical protein; Provisional

Probab=98.68  E-value=1.9e-07  Score=84.20  Aligned_cols=68  Identities=18%  Similarity=0.119  Sum_probs=53.0

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .++.+|||+|||||.++..+++. +.+|+|+|+|++|++.|++.    .       .++++|+.++...           
T Consensus        50 ~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~----~-------~~~~~d~~~lp~~-----------  107 (226)
T PRK05785         50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA----D-------DKVVGSFEALPFR-----------  107 (226)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc----c-------ceEEechhhCCCC-----------
Confidence            46789999999999999999987 57999999999999998652    1       2356777654221           


Q ss_pred             cCCCCCCCCcccEEEECC
Q psy16898        240 SEGNSTGGTAVARVIMNL  257 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~np  257 (324)
                             ..+||.|++..
T Consensus       108 -------d~sfD~v~~~~  118 (226)
T PRK05785        108 -------DKSFDVVMSSF  118 (226)
T ss_pred             -------CCCEEEEEecC
Confidence                   24599999864

>KOG0820|consensus

Probab=98.67  E-value=3.7e-08  Score=89.22  Aligned_cols=105  Identities=20%  Similarity=0.307  Sum_probs=82.7

Q ss_pred             eCCeEEEEeccceeecCcChHHHHHHH--hhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhC
Q psy16898        131 ENGCTFKMDFSKVYWNSRLSTEHERVT--KEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNE  208 (324)
Q Consensus       131 e~g~~f~id~~~~f~~~r~~~e~~~~~--~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~  208 (324)
                      ..|..|..|+.+-+..+....  ..++  +.+++++.||++|.|||.++..+...|++|+|+|++|.++.-+.+..+...
T Consensus        27 ~~~~kfnkd~GQHilkNp~v~--~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp  104 (315)
T KOG0820|consen   27 SGGSKFNKDFGQHILKNPLVI--DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTP  104 (315)
T ss_pred             ccCcccccccchhhhcCHHHH--HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCC
Confidence            467788888888665443221  1233  347799999999999999999999999999999999999999988776444


Q ss_pred             CCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChh
Q psy16898        209 RQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPA  259 (324)
Q Consensus       209 ~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~  259 (324)
                        .+++.+++.+|+...-                    ...||.+|.|+|+
T Consensus       105 --~~~kLqV~~gD~lK~d--------------------~P~fd~cVsNlPy  133 (315)
T KOG0820|consen  105 --KSGKLQVLHGDFLKTD--------------------LPRFDGCVSNLPY  133 (315)
T ss_pred             --ccceeeEEecccccCC--------------------CcccceeeccCCc
Confidence              4578999999976521                    1349999999998

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.67  E-value=3e-07  Score=82.84  Aligned_cols=93  Identities=22%  Similarity=0.132  Sum_probs=70.6

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .++.+|||+|||+|.++..+++.+++|+++|+++.+++.+++|+..++  .  ++.+..+|+.++....           
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~--~--~~~~~~~~~~~~~~~~-----------  111 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESG--L--KIDYRQTTAEELAAEH-----------  111 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcC--C--ceEEEecCHHHhhhhc-----------
Confidence            367899999999999999999998999999999999999999998777  5  4788888887765321           


Q ss_pred             CCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchh
Q psy16898        241 EGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTRE  274 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~  274 (324)
                            ...||+|++...-    ....++..+.. ++++
T Consensus       112 ------~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~g  144 (233)
T PRK05134        112 ------PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPG  144 (233)
T ss_pred             ------CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCC
Confidence                  2359999885221    12345555554 5543

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.64  E-value=2.9e-08  Score=93.41  Aligned_cols=85  Identities=21%  Similarity=0.279  Sum_probs=59.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh---------cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCC-CeEEEeccHHHHHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR---------RGAIVAANDLNPDSYAWLQASIRLNERQVKT-PISATQKDARDFLQTD  229 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~---------~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~-~v~~~~~D~~~~~~~~  229 (324)
                      ..++.+|+|.+||+|.|.+.+.+         ....++|+|+++.++..++.|+..++  +.. +..+.++|...-....
T Consensus        44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~--~~~~~~~i~~~d~l~~~~~~  121 (311)
T PF02384_consen   44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG--IDNSNINIIQGDSLENDKFI  121 (311)
T ss_dssp             T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT--HHCBGCEEEES-TTTSHSCT
T ss_pred             ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc--cccccccccccccccccccc
Confidence            44677999999999999998886         34599999999999999999998877  552 3468888865432211


Q ss_pred             HHHhhhhhcccCCCCCCCCcccEEEECChhhhH
Q psy16898        230 ARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV  262 (324)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~  262 (324)
                                      ....||.|++|||....
T Consensus       122 ----------------~~~~~D~ii~NPPf~~~  138 (311)
T PF02384_consen  122 ----------------KNQKFDVIIGNPPFGSK  138 (311)
T ss_dssp             ----------------ST--EEEEEEE--CTCE
T ss_pred             ----------------cccccccccCCCCcccc
Confidence                            02459999999999654

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.64  E-value=3.8e-07  Score=79.67  Aligned_cols=111  Identities=22%  Similarity=0.165  Sum_probs=69.3

Q ss_pred             hhccCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHH--HHHHHH
Q psy16898        158 KEVREGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFL--QTDARA  232 (324)
Q Consensus       158 ~~~~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~--~~~~~~  232 (324)
                      ..+.+|++|||+|||+|.++..++++.   ++|+++|+|+.+           +  .. +++++++|+.+..  ......
T Consensus        28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~--~~-~i~~~~~d~~~~~~~~~l~~~   93 (188)
T TIGR00438        28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------P--IE-NVDFIRGDFTDEEVLNKIRER   93 (188)
T ss_pred             cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------c--CC-CceEEEeeCCChhHHHHHHHH
Confidence            346789999999999999999888742   379999999964           2  33 5788888876531  111110


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECCh-h-hh-------------HHHHHHHhccchhhcCCCCCCCEEEEEEcccCCChh
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNLP-A-TA-------------VEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLE  297 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~npP-~-~a-------------~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~~  297 (324)
                       .           +...||.|++|++ . ..             ..++..+..       .++++|.+.+.++....-.+
T Consensus        94 -~-----------~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~-------~LkpgG~lvi~~~~~~~~~~  154 (188)
T TIGR00438        94 -V-----------GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKE-------VLKPKGNFVVKVFQGEEIDE  154 (188)
T ss_pred             -h-----------CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHH-------HccCCCEEEEEEccCccHHH
Confidence             0           0235999999852 1 11             122333322       23456888887776654444


Q ss_pred             HHhH
Q psy16898        298 TKKK  301 (324)
Q Consensus       298 ~~~~  301 (324)
                      ....
T Consensus       155 ~l~~  158 (188)
T TIGR00438       155 YLNE  158 (188)
T ss_pred             HHHH
Confidence            4443

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.64  E-value=1.3e-07  Score=94.33  Aligned_cols=87  Identities=20%  Similarity=0.159  Sum_probs=63.7

Q ss_pred             HHHHHHhhcc--CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHH
Q psy16898        152 EHERVTKEVR--EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTD  229 (324)
Q Consensus       152 e~~~~~~~~~--~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~  229 (324)
                      ++..+++.+.  ++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++   .++  ...+++++++|+.+.....
T Consensus        25 ~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~--~~~~i~~~~~d~~~~~~~~   99 (475)
T PLN02336         25 ERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---ING--HYKNVKFMCADVTSPDLNI   99 (475)
T ss_pred             hhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---Hhc--cCCceEEEEecccccccCC
Confidence            3344555543  56799999999999999999988899999999999987644   333  3347999999986421110


Q ss_pred             HHHhhhhhcccCCCCCCCCcccEEEECChh
Q psy16898        230 ARAHLVRWSQSEGNSTGGTAVARVIMNLPA  259 (324)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~  259 (324)
                                      +...||.|+++.+-
T Consensus       100 ----------------~~~~fD~I~~~~~l  113 (475)
T PLN02336        100 ----------------SDGSVDLIFSNWLL  113 (475)
T ss_pred             ----------------CCCCEEEEehhhhH
Confidence                            02359999998654

>PLN03075 nicotianamine synthase; Provisional

Probab=98.63  E-value=1.9e-07  Score=86.94  Aligned_cols=93  Identities=14%  Similarity=0.105  Sum_probs=69.4

Q ss_pred             CCCEEEEEcCCCchhH-HHHHh---cCCEEEEEeCCHHHHHHHHHHHHH-hCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        162 EGDLVLDVFAGVGPFS-IPAAR---RGAIVAANDLNPDSYAWLQASIRL-NERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~a-l~~a~---~g~~V~avD~~~~a~~~a~~N~~~-n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ++++|+|+|||.|+++ +.+++   .+.+++++|+++++++.|+++++. .+  +.++++|..+|+.+....        
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g--L~~rV~F~~~Da~~~~~~--------  192 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD--LSKRMFFHTADVMDVTES--------  192 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC--ccCCcEEEECchhhcccc--------
Confidence            6789999999988664 44443   356899999999999999999964 66  777899999999874322        


Q ss_pred             hcccCCCCCCCCcccEEEECC-----hhhhHHHHHHHhc-cchh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNL-----PATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~np-----P~~a~~~l~~~~~-l~~~  274 (324)
                                ...||+|+++-     +......++.+.. ++++
T Consensus       193 ----------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPG  226 (296)
T PLN03075        193 ----------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPG  226 (296)
T ss_pred             ----------cCCcCEEEEecccccccccHHHHHHHHHHhcCCC
Confidence                      13499999982     1223456666666 6665

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.61  E-value=7.5e-07  Score=79.50  Aligned_cols=112  Identities=13%  Similarity=0.082  Sum_probs=87.2

Q ss_pred             HHHhhccCCCEEEEEcCCCchhHHHHHh--c-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEe-ccHHHHHHHHH
Q psy16898        155 RVTKEVREGDLVLDVFAGVGPFSIPAAR--R-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQ-KDARDFLQTDA  230 (324)
Q Consensus       155 ~~~~~~~~g~~VLDl~~G~G~~al~~a~--~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~-~D~~~~~~~~~  230 (324)
                      +++....+.++||++|+++|.-++.+|.  . ..+++++|.+++..+.|++|.+.-+  +.++++++. +|+.+.+....
T Consensus        52 ~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag--~~~~i~~~~~gdal~~l~~~~  129 (219)
T COG4122          52 RLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG--VDDRIELLLGGDALDVLSRLL  129 (219)
T ss_pred             HHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC--CcceEEEEecCcHHHHHHhcc
Confidence            3444556888999999999999999998  2 3599999999999999999999999  987899999 69999887621


Q ss_pred             HHhhhhhcccCCCCCCCCcccEEEECChh-hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        231 RAHLVRWSQSEGNSTGGTAVARVIMNLPA-TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~fD~Vi~npP~-~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                      ...||.|++|--. .-..|++.+.. +++        ||++.++-...
T Consensus       130 ----------------~~~fDliFIDadK~~yp~~le~~~~lLr~--------GGliv~DNvl~  169 (219)
T COG4122         130 ----------------DGSFDLVFIDADKADYPEYLERALPLLRP--------GGLIVADNVLF  169 (219)
T ss_pred             ----------------CCCccEEEEeCChhhCHHHHHHHHHHhCC--------CcEEEEeeccc
Confidence                            1459999998432 23457776665 555        58888775444

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.60  E-value=1.8e-07  Score=81.66  Aligned_cols=95  Identities=16%  Similarity=0.146  Sum_probs=66.0

Q ss_pred             CEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCC
Q psy16898        164 DLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGN  243 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~  243 (324)
                      .++||+|||.|.|+..+|.++.+++++|+++.|++.|++.+.  +  .+ +|++..+|+.++.+.               
T Consensus        45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~--~--~~-~V~~~~~dvp~~~P~---------------  104 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA--G--LP-HVEWIQADVPEFWPE---------------  104 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT--T---S-SEEEEES-TTT---S---------------
T ss_pred             ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC--C--CC-CeEEEECcCCCCCCC---------------
Confidence            589999999999999999997799999999999999998876  3  44 799999999876432               


Q ss_pred             CCCCCcccEEEEC-------ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        244 STGGTAVARVIMN-------LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       244 ~~~~~~fD~Vi~n-------pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                          ..||.||+-       +...-..+++.+.. |.++        |.+.+-.+
T Consensus       105 ----~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pg--------G~LV~g~~  147 (201)
T PF05401_consen  105 ----GRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPG--------GHLVFGHA  147 (201)
T ss_dssp             ----S-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEE--------EEEEEEEE
T ss_pred             ----CCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCC--------CEEEEEEe
Confidence                469999873       22222345555555 6665        66654444

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>KOG1499|consensus

Probab=98.60  E-value=6.4e-08  Score=90.77  Aligned_cols=63  Identities=25%  Similarity=0.309  Sum_probs=58.6

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +-++++|||+|||+|.+++.+|+.|+ +|+|||.|.-| +.|++.++.|+  +.+.++++.+.+.+.
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~--~~~ii~vi~gkvEdi  121 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNG--LEDVITVIKGKVEDI  121 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcC--ccceEEEeecceEEE
Confidence            45899999999999999999999998 99999999877 99999999999  988899999999886

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.59  E-value=5.1e-07  Score=75.72  Aligned_cols=93  Identities=27%  Similarity=0.309  Sum_probs=66.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      ..++.+|||+|||+|.++..+++.|.+|+++|+|+.+++.      .+       +.....+.......           
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~~-------~~~~~~~~~~~~~~-----------   75 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------RN-------VVFDNFDAQDPPFP-----------   75 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------TT-------SEEEEEECHTHHCH-----------
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------hh-------hhhhhhhhhhhhcc-----------
Confidence            5678999999999999999999999999999999999988      11       12222222221111           


Q ss_pred             cCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        240 SEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                             ...||.|+++     .|. ...+++.+.. ++++        |++.+.....
T Consensus        76 -------~~~fD~i~~~~~l~~~~d-~~~~l~~l~~~Lkpg--------G~l~~~~~~~  118 (161)
T PF13489_consen   76 -------DGSFDLIICNDVLEHLPD-PEEFLKELSRLLKPG--------GYLVISDPNR  118 (161)
T ss_dssp             -------SSSEEEEEEESSGGGSSH-HHHHHHHHHHCEEEE--------EEEEEEEEBT
T ss_pred             -------ccchhhHhhHHHHhhccc-HHHHHHHHHHhcCCC--------CEEEEEEcCC
Confidence                   2469999986     443 4567777776 7765        8887776654

...

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.59  E-value=4.5e-07  Score=80.43  Aligned_cols=100  Identities=20%  Similarity=0.199  Sum_probs=73.1

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      .++.+|||+|||+|.++..+++.+   ++++++|+++.+++.++++..  .  . .++.++.+|+.+....         
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~--~-~~i~~~~~d~~~~~~~---------  103 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--L--P-LNIEFIQADAEALPFE---------  103 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--c--C-CCceEEecchhcCCCC---------
Confidence            368899999999999999999854   389999999999999998876  2  2 2688999998764311         


Q ss_pred             cccCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        238 SQSEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                               ...||.|+++     .+. ...+++.+.. |++        +|.+.+..+..
T Consensus       104 ---------~~~~D~i~~~~~~~~~~~-~~~~l~~~~~~L~~--------gG~l~~~~~~~  146 (223)
T TIGR01934       104 ---------DNSFDAVTIAFGLRNVTD-IQKALREMYRVLKP--------GGRLVILEFSK  146 (223)
T ss_pred             ---------CCcEEEEEEeeeeCCccc-HHHHHHHHHHHcCC--------CcEEEEEEecC
Confidence                     1349999874     232 3456666655 554        47777655543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.58  E-value=1.5e-07  Score=92.92  Aligned_cols=91  Identities=27%  Similarity=0.324  Sum_probs=70.2

Q ss_pred             CCEEEEEcCCCchhHHHHHhcC-----C-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        163 GDLVLDVFAGVGPFSIPAARRG-----A-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~~g-----~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.+|+|+|||+|.++..+++.|     + +|+|||.|+.|+..+++.++.|+  ..++|+++++|++++-..        
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~--w~~~V~vi~~d~r~v~lp--------  256 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG--WGDKVTVIHGDMREVELP--------  256 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT--TTTTEEEEES-TTTSCHS--------
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC--CCCeEEEEeCcccCCCCC--------
Confidence            5789999999999998887754     3 99999999999999988888999  988999999999986432        


Q ss_pred             hcccCCCCCCCCcccEEEECChh------hhHHHHHHHhc-cchh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPA------TAVEYVRYLKV-LTRE  274 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~------~a~~~l~~~~~-l~~~  274 (324)
                                 .++|+||+-+=.      ...+.|++... |+++
T Consensus       257 -----------ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~  290 (448)
T PF05185_consen  257 -----------EKVDIIVSELLGSFGDNELSPECLDAADRFLKPD  290 (448)
T ss_dssp             -----------S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEE
T ss_pred             -----------CceeEEEEeccCCccccccCHHHHHHHHhhcCCC
Confidence                       359999996543      34567888877 7776

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.57  E-value=1.6e-06  Score=79.15  Aligned_cols=108  Identities=13%  Similarity=0.065  Sum_probs=81.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ..+.++||++|+++|.-++.+|+.   +.+|+++|.+++..+.|++|++..+  +.++|+++.+|+.+.+.+.....   
T Consensus        77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag--~~~~I~~~~G~a~e~L~~l~~~~---  151 (247)
T PLN02589         77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG--VAHKIDFREGPALPVLDQMIEDG---  151 (247)
T ss_pred             HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--CCCceEEEeccHHHHHHHHHhcc---
Confidence            345679999999999999999873   5699999999999999999999999  88899999999999988764310   


Q ss_pred             hcccCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                              .....||.|++|--.. -..+++.+.. ++        +||+|.+.
T Consensus       152 --------~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~--------~GGviv~D  189 (247)
T PLN02589        152 --------KYHGTFDFIFVDADKDNYINYHKRLIDLVK--------VGGVIGYD  189 (247)
T ss_pred             --------ccCCcccEEEecCCHHHhHHHHHHHHHhcC--------CCeEEEEc
Confidence                    0013599999995432 2345554444 44        45666544

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.56  E-value=3.2e-07  Score=82.30  Aligned_cols=136  Identities=15%  Similarity=0.053  Sum_probs=88.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHH-HHHHhC-CC---C----CCCeEEEeccHHHHHHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQA-SIRLNE-RQ---V----KTPISATQKDARDFLQTDA  230 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~-N~~~n~-~~---l----~~~v~~~~~D~~~~~~~~~  230 (324)
                      ..++.+||+.|||.|.-.+.+|.+|.+|+|+|+|+.|++.+.+ |..... ..   .    .++|+++++|.+++.....
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~  114 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV  114 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence            4577799999999999999999999999999999999999833 222110 00   1    1368999999998654322


Q ss_pred             HHhhhhhcccCCCCCCCCcccEEEEC------ChhhhHHHHHHHhc-cchhhcCCCCCCCE--EEEEEcccCCC--h---
Q psy16898        231 RAHLVRWSQSEGNSTGGTAVARVIMN------LPATAVEYVRYLKV-LTREEFGKLSRPPV--LYLYCFLPKMD--L---  296 (324)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~fD~Vi~n------pP~~a~~~l~~~~~-l~~~~~~~~~~~g~--vh~y~f~~~~~--~---  296 (324)
                                       .+||.|.==      ||.....+.+.+.. ++++        |.  +.+..+.....  +   
T Consensus       115 -----------------g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~--------g~~lLi~l~~~~~~~~GPPf~  169 (218)
T PF05724_consen  115 -----------------GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPG--------GRGLLITLEYPQGEMEGPPFS  169 (218)
T ss_dssp             -----------------HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEE--------EEEEEEEEES-CSCSSSSS--
T ss_pred             -----------------CCceEEEEecccccCCHHHHHHHHHHHHHHhCCC--------CcEEEEEEEcCCcCCCCcCCC
Confidence                             238877542      66667788888887 6765        55  33444433221  1   


Q ss_pred             -hHHhHhhhcCCCceEEEEeecccC
Q psy16898        297 -ETKKKIKSYDPSYATLIRGIRRLS  320 (324)
Q Consensus       297 -~~~~~v~~y~~~~~~~i~~~~~~~  320 (324)
                       ...+..+.|.++..++.++.....
T Consensus       170 v~~~ev~~l~~~~f~i~~l~~~~~~  194 (218)
T PF05724_consen  170 VTEEEVRELFGPGFEIEELEEEDSI  194 (218)
T ss_dssp             --HHHHHHHHTTTEEEEEEEEEE-T
T ss_pred             CCHHHHHHHhcCCcEEEEEeccccc
Confidence             233444567888787777765443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK08317 hypothetical protein; Provisional

Probab=98.55  E-value=7.8e-07  Score=79.48  Aligned_cols=100  Identities=19%  Similarity=0.088  Sum_probs=70.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.++.+|||+|||+|.++..+++.   +++|+|+|+++.+++.++++....    ..++.+..+|+.+....        
T Consensus        17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~--------   84 (241)
T PRK08317         17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL----GPNVEFVRGDADGLPFP--------   84 (241)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC----CCceEEEecccccCCCC--------
Confidence            557889999999999999999884   359999999999999999984322    23789999998653211        


Q ss_pred             hcccCCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                                ...||.|+++..-    ....++..+.. |++        +|.+.+..
T Consensus        85 ----------~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~--------gG~l~~~~  124 (241)
T PRK08317         85 ----------DGSFDAVRSDRVLQHLEDPARALAEIARVLRP--------GGRVVVLD  124 (241)
T ss_pred             ----------CCCceEEEEechhhccCCHHHHHHHHHHHhcC--------CcEEEEEe
Confidence                      1359999886321    12335555544 555        47665443

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.55  E-value=4.7e-08  Score=84.06  Aligned_cols=62  Identities=24%  Similarity=0.232  Sum_probs=56.7

Q ss_pred             CCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHH
Q psy16898        163 GDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQ  227 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~  227 (324)
                      .+++.|||+|+|.+|+.+|....+|+|+|.+|.-..+|++|++.+|  +. |++++++|++++-.
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g--~~-n~evv~gDA~~y~f   94 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPG--DV-NWEVVVGDARDYDF   94 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCC--Cc-ceEEEecccccccc
Confidence            3689999999999999999986799999999999999999999998  75 89999999998643

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.54  E-value=3e-07  Score=87.51  Aligned_cols=73  Identities=19%  Similarity=0.138  Sum_probs=58.3

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .++.+|||+|||+|.+++.+++.  +.+|+++|.|+.+++.|+++...+      +++++.+|+.+....          
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~------~i~~i~gD~e~lp~~----------  175 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK------ECKIIEGDAEDLPFP----------  175 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc------CCeEEeccHHhCCCC----------
Confidence            36789999999999999998874  469999999999999999886533      477899998764221          


Q ss_pred             ccCCCCCCCCcccEEEECC
Q psy16898        239 QSEGNSTGGTAVARVIMNL  257 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~np  257 (324)
                              ...||+|+++.
T Consensus       176 --------~~sFDvVIs~~  186 (340)
T PLN02490        176 --------TDYADRYVSAG  186 (340)
T ss_pred             --------CCceeEEEEcC
Confidence                    13599999863

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.53  E-value=1e-06  Score=82.11  Aligned_cols=83  Identities=23%  Similarity=0.338  Sum_probs=70.3

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ..+|+.|||+||+.|+-+..+|..   ...|+|+|+++.-+..++.|+++.|  +. ++...+.|+.........     
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g--~~-~v~~~~~D~~~~~~~~~~-----  154 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG--VF-NVIVINADARKLDPKKPE-----  154 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT---S-SEEEEESHHHHHHHHHHT-----
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC--Cc-eEEEEeeccccccccccc-----
Confidence            568999999999999999999983   2499999999999999999999999  87 788888999987654322     


Q ss_pred             hcccCCCCCCCCcccEEEECChhhh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                                 ..||.|++|+|.++
T Consensus       155 -----------~~fd~VlvDaPCSg  168 (283)
T PF01189_consen  155 -----------SKFDRVLVDAPCSG  168 (283)
T ss_dssp             -----------TTEEEEEEECSCCC
T ss_pred             -----------cccchhhcCCCccc
Confidence                       24999999999864

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK06202 hypothetical protein; Provisional

Probab=98.52  E-value=1.7e-07  Score=84.54  Aligned_cols=72  Identities=26%  Similarity=0.310  Sum_probs=53.2

Q ss_pred             cCCCEEEEEcCCCchhHHHHHh----cC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAAR----RG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~----~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      .++.+|||+|||+|.++..+++    .|  .+|+|+|+|+.|++.|+++...++      +.+..+++..+...      
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~------~~~~~~~~~~l~~~------  126 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG------VTFRQAVSDELVAE------  126 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC------CeEEEEeccccccc------
Confidence            4667999999999999988875    23  499999999999999998876444      34444544332211      


Q ss_pred             hhhcccCCCCCCCCcccEEEEC
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMN  256 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~n  256 (324)
                                  ...||.|+++
T Consensus       127 ------------~~~fD~V~~~  136 (232)
T PRK06202        127 ------------GERFDVVTSN  136 (232)
T ss_pred             ------------CCCccEEEEC
Confidence                        1359999997

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.51  E-value=6.6e-07  Score=80.08  Aligned_cols=99  Identities=19%  Similarity=0.164  Sum_probs=70.4

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      ++.+|||+|||+|.++..+++.+  .+|+++|+++.+++.++++..       .++.++.+|+.+....           
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~-----------   95 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLPLE-----------   95 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCCCC-----------
Confidence            45699999999999999999865  478999999999998876543       2578899998764321           


Q ss_pred             cCCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        240 SEGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                             ...||.|+++-.-    ....++..+.. +++        +|.+.+-++...
T Consensus        96 -------~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~--------~G~l~~~~~~~~  139 (240)
T TIGR02072        96 -------DSSFDLIVSNLALQWCDDLSQALSELARVLKP--------GGLLAFSTFGPG  139 (240)
T ss_pred             -------CCceeEEEEhhhhhhccCHHHHHHHHHHHcCC--------CcEEEEEeCCcc
Confidence                   2359999997432    12345555544 554        587777665554

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.50  E-value=8.2e-07  Score=82.93  Aligned_cols=92  Identities=14%  Similarity=0.113  Sum_probs=71.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.+|++++|++||.|+++..+++..   ++|+|+|.++.|++.+++++.. .    ++++++++|..++...... .   
T Consensus        17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~----~ri~~i~~~f~~l~~~l~~-~---   87 (296)
T PRK00050         17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-F----GRFTLVHGNFSNLKEVLAE-G---   87 (296)
T ss_pred             CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-C----CcEEEEeCCHHHHHHHHHc-C---
Confidence            3578899999999999999999863   6999999999999999988754 3    3799999999998654321 0   


Q ss_pred             hcccCCCCCCCCcccEEEECChhhhHHHHHHHhc
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV  270 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~  270 (324)
                                ...+|.|++|+=.++.++-+.-++
T Consensus        88 ----------~~~vDgIl~DLGvSs~Qld~~~RG  111 (296)
T PRK00050         88 ----------LGKVDGILLDLGVSSPQLDDAERG  111 (296)
T ss_pred             ----------CCccCEEEECCCccccccCCCcCC
Confidence                      124899999876665555555555

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.50  E-value=1.2e-08  Score=79.41  Aligned_cols=71  Identities=15%  Similarity=0.174  Sum_probs=45.9

Q ss_pred             EEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCC
Q psy16898        167 LDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNS  244 (324)
Q Consensus       167 LDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~  244 (324)
                      ||+|||+|.++..++..  +.+++++|+|+.|++.+++++....  .. +...+..+..+......              
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~--~~-~~~~~~~~~~~~~~~~~--------------   63 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG--ND-NFERLRFDVLDLFDYDP--------------   63 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC--------------
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--Cc-ceeEEEeecCChhhccc--------------
Confidence            79999999999999886  6799999999999999988888766  33 44455544444322210              


Q ss_pred             CCCCcccEEEEC
Q psy16898        245 TGGTAVARVIMN  256 (324)
Q Consensus       245 ~~~~~fD~Vi~n  256 (324)
                        ...||.|++.
T Consensus        64 --~~~fD~V~~~   73 (99)
T PF08242_consen   64 --PESFDLVVAS   73 (99)
T ss_dssp             ------SEEEEE
T ss_pred             --ccccceehhh
Confidence              1359999885

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.45  E-value=4.8e-07  Score=83.73  Aligned_cols=95  Identities=9%  Similarity=0.078  Sum_probs=66.0

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc-----CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR-----GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~-----g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ++.+|||+|||+|.++..+++.     ++.|+|+|+|+.|++.|+++.       + ++.+..+|+.++...        
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-------~-~~~~~~~d~~~lp~~--------  148 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-------P-QVTFCVASSHRLPFA--------  148 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-------C-CCeEEEeecccCCCc--------
Confidence            4578999999999999988863     247999999999999987532       2 578888998764321        


Q ss_pred             hcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                                ...||.|+...-.   .++..+.. |++        +|.+.+.+....
T Consensus       149 ----------~~sfD~I~~~~~~---~~~~e~~rvLkp--------gG~li~~~p~~~  185 (272)
T PRK11088        149 ----------DQSLDAIIRIYAP---CKAEELARVVKP--------GGIVITVTPGPR  185 (272)
T ss_pred             ----------CCceeEEEEecCC---CCHHHHHhhccC--------CCEEEEEeCCCc
Confidence                      1359999875421   23333433 554        488776655443

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.44  E-value=5.9e-07  Score=78.85  Aligned_cols=78  Identities=17%  Similarity=0.137  Sum_probs=58.3

Q ss_pred             HHHhhccCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHh
Q psy16898        155 RVTKEVREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAH  233 (324)
Q Consensus       155 ~~~~~~~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~  233 (324)
                      .+.+.++++.+|||+|||+|.++..+++. +..++|+|+++.+++.+++    ++      ++++++|+.+.+....   
T Consensus         6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~~------~~~~~~d~~~~l~~~~---   72 (194)
T TIGR02081         6 SILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----RG------VNVIQGDLDEGLEAFP---   72 (194)
T ss_pred             HHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----cC------CeEEEEEhhhcccccC---
Confidence            45556778899999999999999988864 5589999999999988753    23      5678888765322110   


Q ss_pred             hhhhcccCCCCCCCCcccEEEECCh
Q psy16898        234 LVRWSQSEGNSTGGTAVARVIMNLP  258 (324)
Q Consensus       234 ~~~~~~~~~~~~~~~~fD~Vi~npP  258 (324)
                                   ...||.|+++.+
T Consensus        73 -------------~~sfD~Vi~~~~   84 (194)
T TIGR02081        73 -------------DKSFDYVILSQT   84 (194)
T ss_pred             -------------CCCcCEEEEhhH
Confidence                         135999999854

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.43  E-value=1.8e-06  Score=77.79  Aligned_cols=99  Identities=18%  Similarity=0.240  Sum_probs=82.5

Q ss_pred             CEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        164 DLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      ..+||+|||.|.+.+.+|++  -..++|||+....+..|.+-+...+  +. |+.+++.||.+++.....          
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~--l~-Nlri~~~DA~~~l~~~~~----------  116 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG--LK-NLRLLCGDAVEVLDYLIP----------  116 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC--CC-cEEEEcCCHHHHHHhcCC----------
Confidence            48999999999999999995  3589999999999999999999988  87 899999999999887543          


Q ss_pred             CCCCCCCcccEEEECChhh------------hHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        242 GNSTGGTAVARVIMNLPAT------------AVEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~npP~~------------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                           ..+.|.|.+|-|+-            ...|++.+.. |+++        |.||+-
T Consensus       117 -----~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~g--------G~l~~a  163 (227)
T COG0220         117 -----DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPG--------GVLHFA  163 (227)
T ss_pred             -----CCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCC--------CEEEEE
Confidence                 23689999998871            2368888876 7765        888853

>PRK04148 hypothetical protein; Provisional

Probab=98.41  E-value=1.4e-06  Score=71.82  Aligned_cols=71  Identities=11%  Similarity=0.009  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCCCch-hHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        162 EGDLVLDVFAGVGP-FSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       162 ~g~~VLDl~~G~G~-~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      ++.+++|+|||.|. ++..+++.|..|+|+|+|+.+++.++++    +      +.++.+|.++--.+...         
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~----~------~~~v~dDlf~p~~~~y~---------   76 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL----G------LNAFVDDLFNPNLEIYK---------   76 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh----C------CeEEECcCCCCCHHHHh---------
Confidence            46789999999996 9999999999999999999988877543    4      46888898865444332         


Q ss_pred             CCCCCCCCcccEEEE-CChh
Q psy16898        241 EGNSTGGTAVARVIM-NLPA  259 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~-npP~  259 (324)
                              .+|.|.. .||.
T Consensus        77 --------~a~liysirpp~   88 (134)
T PRK04148         77 --------NAKLIYSIRPPR   88 (134)
T ss_pred             --------cCCEEEEeCCCH
Confidence                    3898854 6665

>KOG1500|consensus

Probab=98.40  E-value=5.5e-07  Score=83.81  Aligned_cols=108  Identities=20%  Similarity=0.163  Sum_probs=79.8

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .++.|||+|||+|.++..+|+.|+ +|+|||.|. |.++|++-++.|+  +.++++++.|.+.+.-.             
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~--~~~rItVI~GKiEdieL-------------  240 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNN--LADRITVIPGKIEDIEL-------------  240 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCC--ccceEEEccCccccccC-------------
Confidence            688999999999999999999988 999999875 7899999999999  98999999999887522             


Q ss_pred             CCCCCCCCcccEEEECChhhh---HHHHHHH---hc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        241 EGNSTGGTAVARVIMNLPATA---VEYVRYL---KV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP~~a---~~~l~~~---~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                            +++.|+||..|-...   ...|+..   +. |+|.. +.-..-|-+|.--|+.
T Consensus       241 ------PEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~G-kMfPT~gdiHlAPFsD  292 (517)
T KOG1500|consen  241 ------PEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNG-KMFPTVGDIHLAPFSD  292 (517)
T ss_pred             ------chhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCC-cccCcccceeecccch
Confidence                  245899999886532   1234333   23 56542 1111236677666654

>PLN02823 spermine synthase

Probab=98.36  E-value=3.6e-06  Score=80.17  Aligned_cols=102  Identities=15%  Similarity=0.188  Sum_probs=77.2

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHHhCCCC-CCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR-G-AIVAANDLNPDSYAWLQASIRLNERQV-KTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~-g-~~V~avD~~~~a~~~a~~N~~~n~~~l-~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      ..++||.+|+|.|..+..+++. + .+|++||+++..++.+++....++..+ +.+++++.+|++.++...         
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~---------  173 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR---------  173 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC---------
Confidence            4579999999999999998884 3 489999999999999999986542112 248999999999998542         


Q ss_pred             ccCCCCCCCCcccEEEECChhh----------hHHHHH-HHhc-cchhhcCCCCCCCEEEEE
Q psy16898        239 QSEGNSTGGTAVARVIMNLPAT----------AVEYVR-YLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~----------a~~~l~-~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                              ..+||+|++|+++.          ..+|++ .++. |+++        |++.+-
T Consensus       174 --------~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~--------Gvlv~q  219 (336)
T PLN02823        174 --------DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPG--------GIFVTQ  219 (336)
T ss_pred             --------CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCC--------cEEEEe
Confidence                    24599999996431          346776 5555 6654        776554

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.34  E-value=2e-06  Score=79.22  Aligned_cols=96  Identities=24%  Similarity=0.312  Sum_probs=72.0

Q ss_pred             HHHhh--ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898        155 RVTKE--VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA  232 (324)
Q Consensus       155 ~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~  232 (324)
                      ++++.  +.++..|+|+|+|.|.++..+++.+.+|+++|+++..++.+++....+     ++++++++|+.++-..... 
T Consensus        21 ~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~-----~~~~vi~~D~l~~~~~~~~-   94 (262)
T PF00398_consen   21 KIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASN-----PNVEVINGDFLKWDLYDLL-   94 (262)
T ss_dssp             HHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTC-----SSEEEEES-TTTSCGGGHC-
T ss_pred             HHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhc-----ccceeeecchhccccHHhh-
Confidence            45554  447899999999999999999999999999999999999999876633     3899999999875433210 


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECChhh-hHHHHHHHhc
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV  270 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~  270 (324)
                                    ......|+.|+|+. +..++..+..
T Consensus        95 --------------~~~~~~vv~NlPy~is~~il~~ll~  119 (262)
T PF00398_consen   95 --------------KNQPLLVVGNLPYNISSPILRKLLE  119 (262)
T ss_dssp             --------------SSSEEEEEEEETGTGHHHHHHHHHH
T ss_pred             --------------cCCceEEEEEecccchHHHHHHHhh
Confidence                          12367899999984 3345555544

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG1271|consensus

Probab=98.34  E-value=7.5e-07  Score=76.44  Aligned_cols=58  Identities=22%  Similarity=0.224  Sum_probs=54.0

Q ss_pred             EEEEEcCCCchhHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        165 LVLDVFAGVGPFSIPAARRGA--IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       165 ~VLDl~~G~G~~al~~a~~g~--~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      +|||||||.|.+-..+++.|.  ..+|+|-|+.|++.|+.-++.++  +++.|+|.+.|+.+
T Consensus        70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~--~~n~I~f~q~DI~~  129 (227)
T KOG1271|consen   70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG--FSNEIRFQQLDITD  129 (227)
T ss_pred             ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC--CCcceeEEEeeccC
Confidence            999999999999999999876  59999999999999999999999  98779999999876

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.34  E-value=1.2e-06  Score=77.07  Aligned_cols=100  Identities=21%  Similarity=0.170  Sum_probs=72.3

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      ..-.+|.|||||+|.-+-.++++  ++.|+|+|.|++|++.|+.     .  +. +++|..+|++++..+          
T Consensus        29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~-----r--lp-~~~f~~aDl~~w~p~----------   90 (257)
T COG4106          29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ-----R--LP-DATFEEADLRTWKPE----------   90 (257)
T ss_pred             cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH-----h--CC-CCceecccHhhcCCC----------
Confidence            35679999999999999999985  7899999999999999853     2  44 689999999987553          


Q ss_pred             ccCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCCh
Q psy16898        239 QSEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDL  296 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~  296 (324)
                               ..+|+++.|     +|+. .+.+..+.. |.+        ||++-+..=...+++
T Consensus        91 ---------~~~dllfaNAvlqWlpdH-~~ll~rL~~~L~P--------gg~LAVQmPdN~dep  136 (257)
T COG4106          91 ---------QPTDLLFANAVLQWLPDH-PELLPRLVSQLAP--------GGVLAVQMPDNLDEP  136 (257)
T ss_pred             ---------Cccchhhhhhhhhhcccc-HHHHHHHHHhhCC--------CceEEEECCCccCch
Confidence                     237888877     5553 233333333 444        577777654444443

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.33  E-value=8.2e-07  Score=89.67  Aligned_cols=84  Identities=11%  Similarity=0.082  Sum_probs=59.5

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcC----------CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRG----------AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDAR  231 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g----------~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~  231 (324)
                      .+.+|||+|||+|.|.+.++.+.          ..++|+|+++.++..++.|+...+  .. .+.+.+.|..........
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~--~~-~~~i~~~d~l~~~~~~~~  107 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA--LL-EINVINFNSLSYVLLNIE  107 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC--CC-Cceeeecccccccccccc
Confidence            34589999999999999988631          378999999999999999998664  22 355566664432110000


Q ss_pred             HhhhhhcccCCCCCCCCcccEEEECChhhh
Q psy16898        232 AHLVRWSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                      +             ....||+||.|||+..
T Consensus       108 ~-------------~~~~fD~IIgNPPy~~  124 (524)
T TIGR02987       108 S-------------YLDLFDIVITNPPYGR  124 (524)
T ss_pred             c-------------ccCcccEEEeCCCccc
Confidence            0             0235999999999974

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.31  E-value=9.5e-06  Score=74.13  Aligned_cols=133  Identities=17%  Similarity=0.171  Sum_probs=93.3

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCC-CCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQV-KTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l-~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      .+.++||=+|.|.|..+..+.+..  .+|++||+++..++.+++-........ +.+++++.+|++.++.+...      
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~------  148 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE------  148 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS------
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC------
Confidence            467899999999999999999854  599999999999999998766532001 24899999999999987421      


Q ss_pred             cccCCCCCCCCcccEEEECChh--------hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHH----hHhhh
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPA--------TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETK----KKIKS  304 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~--------~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~----~~v~~  304 (324)
                                .+||+|++|++.        .+.+|.+.++. |+++        |++.+..-+........    +.++.
T Consensus       149 ----------~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~--------Gv~v~~~~~~~~~~~~~~~i~~tl~~  210 (246)
T PF01564_consen  149 ----------EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPD--------GVLVLQAGSPFLHPELFKSILKTLRS  210 (246)
T ss_dssp             ----------T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEE--------EEEEEEEEETTTTHHHHHHHHHHHHT
T ss_pred             ----------CcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCC--------cEEEEEccCcccchHHHHHHHHHHHH
Confidence                      159999998765        24688888877 8876        88877765554443332    23455


Q ss_pred             cCCCceEEEEeec
Q psy16898        305 YDPSYATLIRGIR  317 (324)
Q Consensus       305 y~~~~~~~i~~~~  317 (324)
                      ..+....-...+.
T Consensus       211 ~F~~v~~~~~~vP  223 (246)
T PF01564_consen  211 VFPQVKPYTAYVP  223 (246)
T ss_dssp             TSSEEEEEEEECT
T ss_pred             hCCceEEEEEEcC
Confidence            5555444444433

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.27  E-value=1.7e-06  Score=79.78  Aligned_cols=43  Identities=14%  Similarity=0.152  Sum_probs=35.3

Q ss_pred             CCCEEEEEcCCCch----hHHHHHhc-------CCEEEEEeCCHHHHHHHHHHH
Q psy16898        162 EGDLVLDVFAGVGP----FSIPAARR-------GAIVAANDLNPDSYAWLQASI  204 (324)
Q Consensus       162 ~g~~VLDl~~G~G~----~al~~a~~-------g~~V~avD~~~~a~~~a~~N~  204 (324)
                      ++.+|||+|||+|.    +++.+++.       +.+|+|+|+|+.|++.|++++
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~  152 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI  152 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence            45699999999995    66666652       358999999999999999864

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>KOG1122|consensus

Probab=98.21  E-value=8.9e-06  Score=78.01  Aligned_cols=83  Identities=23%  Similarity=0.361  Sum_probs=71.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh--cCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR--RGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~--~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      .++|++|||+||..|+-+.++|.  ++. .|+|+|.|..-++.++.|+.+-|  +. +..+.+.|..+|.....      
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG--v~-ntiv~n~D~~ef~~~~~------  309 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG--VT-NTIVSNYDGREFPEKEF------  309 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC--CC-ceEEEccCccccccccc------
Confidence            56899999999999999998887  444 89999999999999999999999  87 78899999987754321      


Q ss_pred             hcccCCCCCCCCcccEEEECChhhh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                                +..||.|++|-|.++
T Consensus       310 ----------~~~fDRVLLDAPCSG  324 (460)
T KOG1122|consen  310 ----------PGSFDRVLLDAPCSG  324 (460)
T ss_pred             ----------CcccceeeecCCCCC
Confidence                      236999999999876

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.20  E-value=3.1e-06  Score=70.13  Aligned_cols=57  Identities=33%  Similarity=0.469  Sum_probs=50.4

Q ss_pred             EEEEEcCCCchhHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        165 LVLDVFAGVGPFSIPAARRGA--IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       165 ~VLDl~~G~G~~al~~a~~g~--~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      +++|+|||+|.+++.+++.+.  +|+++|.+|.+++.+++|++.|+  +. ++++++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~--~~-~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN--LP-NVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC--CC-cEEEEEeeeeC
Confidence            489999999999999998654  79999999999999999999998  76 68888877654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.16  E-value=2.9e-06  Score=79.05  Aligned_cols=82  Identities=17%  Similarity=0.199  Sum_probs=50.4

Q ss_pred             CCEEEEEcCCCchh-HHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHh-CCCCCCCeEEEeccHHH-HHHHHHHHhhhhhc
Q psy16898        163 GDLVLDVFAGVGPF-SIPAAR-RGAIVAANDLNPDSYAWLQASIRLN-ERQVKTPISATQKDARD-FLQTDARAHLVRWS  238 (324)
Q Consensus       163 g~~VLDl~~G~G~~-al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n-~~~l~~~v~~~~~D~~~-~~~~~~~~~~~~~~  238 (324)
                      .-++||+|+|.-.+ .+..++ .|.+++|.|+++.+++.|++|++.| +  +.++|+++...-.. ++....        
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~--L~~~I~l~~~~~~~~i~~~i~--------  172 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPN--LESRIELRKQKNPDNIFDGII--------  172 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T---TTTEEEEE--ST-SSTTTST--------
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccc--cccceEEEEcCCccccchhhh--------
Confidence            45899999998866 566665 5889999999999999999999999 8  98899988664222 111110        


Q ss_pred             ccCCCCCCCCcccEEEECChhh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                            .....||..++|||..
T Consensus       173 ------~~~e~~dftmCNPPFy  188 (299)
T PF05971_consen  173 ------QPNERFDFTMCNPPFY  188 (299)
T ss_dssp             ------T--S-EEEEEE-----
T ss_pred             ------cccceeeEEecCCccc
Confidence                  0124699999999985

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG2671|consensus

Probab=98.14  E-value=1.5e-06  Score=81.19  Aligned_cols=103  Identities=20%  Similarity=0.271  Sum_probs=71.9

Q ss_pred             ecCcChHHHHHHHh---hccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHH-------HHHHHHHHhCCCCC-C
Q psy16898        145 WNSRLSTEHERVTK---EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYA-------WLQASIRLNERQVK-T  213 (324)
Q Consensus       145 ~~~r~~~e~~~~~~---~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~-------~a~~N~~~n~~~l~-~  213 (324)
                      -+..+.+|.-.+.+   .+++|+.|+|.|.|||++-+.+|.-|+.|+|-||+-.++.       ..+.|.+..|  .. .
T Consensus       188 GnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg--~~~~  265 (421)
T KOG2671|consen  188 GNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYG--SSSQ  265 (421)
T ss_pred             CCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhC--Ccch
Confidence            34455555444433   4679999999999999999999999999999999999887       2355666555  32 2


Q ss_pred             CeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHH
Q psy16898        214 PISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVR  266 (324)
Q Consensus       214 ~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~  266 (324)
                      -+.++.+|...-.-..                 ...||.||+|||+.-.+-..
T Consensus       266 fldvl~~D~sn~~~rs-----------------n~~fDaIvcDPPYGVRe~~r  301 (421)
T KOG2671|consen  266 FLDVLTADFSNPPLRS-----------------NLKFDAIVCDPPYGVREGAR  301 (421)
T ss_pred             hhheeeecccCcchhh-----------------cceeeEEEeCCCcchhhhhh
Confidence            3455666654322111                 24599999999997554333

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.12  E-value=1.9e-05  Score=73.37  Aligned_cols=92  Identities=23%  Similarity=0.232  Sum_probs=59.0

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .|++|||+|||.|+++..++.+|+ .|+|+|.++..+...+--.+.-+  .+..+..+..-+.+...             
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg--~~~~~~~lplgvE~Lp~-------------  179 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLG--QDPPVFELPLGVEDLPN-------------  179 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhC--CCccEEEcCcchhhccc-------------
Confidence            799999999999999999999998 89999999987665443223223  22123333233333222             


Q ss_pred             CCCCCCCCcccEEEE-CChh---hhHHHHHHHhc-cchh
Q psy16898        241 EGNSTGGTAVARVIM-NLPA---TAVEYVRYLKV-LTRE  274 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~-npP~---~a~~~l~~~~~-l~~~  274 (324)
                            ...||.|++ -.=+   .....|..++. |+++
T Consensus       180 ------~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~g  212 (315)
T PF08003_consen  180 ------LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPG  212 (315)
T ss_pred             ------cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCC
Confidence                  135999976 2222   24456777766 6654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG2915|consensus

Probab=98.11  E-value=2e-05  Score=71.78  Aligned_cols=95  Identities=19%  Similarity=0.192  Sum_probs=75.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.+|.+||+.|+|+|.++.++++.-   .+++..|....-.+.|.+-.+..+  +.+++++.+.|+-..-....      
T Consensus       103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg--i~~~vt~~hrDVc~~GF~~k------  174 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG--IGDNVTVTHRDVCGSGFLIK------  174 (314)
T ss_pred             CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC--CCcceEEEEeecccCCcccc------
Confidence            5699999999999999999999953   499999999999999999999999  99999999999754211110      


Q ss_pred             hcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cch
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTR  273 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~  273 (324)
                                ...+|.|.+|+|. .++.++.+.. ++.
T Consensus       175 ----------s~~aDaVFLDlPa-Pw~AiPha~~~lk~  201 (314)
T KOG2915|consen  175 ----------SLKADAVFLDLPA-PWEAIPHAAKILKD  201 (314)
T ss_pred             ----------ccccceEEEcCCC-hhhhhhhhHHHhhh
Confidence                      1349999999998 5555555544 554

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.08  E-value=1.6e-05  Score=70.66  Aligned_cols=61  Identities=21%  Similarity=0.251  Sum_probs=52.8

Q ss_pred             EEEEcCCCchhHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHH
Q psy16898        166 VLDVFAGVGPFSIPAARRGA--IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQT  228 (324)
Q Consensus       166 VLDl~~G~G~~al~~a~~g~--~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~  228 (324)
                      |+|+||--|.+++.++++|.  +|+|+|+++..++.|++|++.++  +.+++++..+|..+.+..
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~--l~~~i~~rlgdGL~~l~~   63 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG--LEDRIEVRLGDGLEVLKP   63 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG--G
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CcccEEEEECCcccccCC
Confidence            68999999999999999886  89999999999999999999999  988999999999876654

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.08  E-value=1e-05  Score=72.95  Aligned_cols=54  Identities=28%  Similarity=0.261  Sum_probs=41.4

Q ss_pred             cCcChHHHHHHHhhc---cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHH
Q psy16898        146 NSRLSTEHERVTKEV---REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAW  199 (324)
Q Consensus       146 ~~r~~~e~~~~~~~~---~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~  199 (324)
                      .+|-......+++.+   .+|.+|||+|||+|.|+..++++|+ +|+|+|+++.++..
T Consensus        56 vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        56 VSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             hhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            344333223345543   3788999999999999999999987 99999999987765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.07  E-value=2.7e-05  Score=78.35  Aligned_cols=99  Identities=13%  Similarity=0.145  Sum_probs=78.0

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .+..+||+|||.|.|.+.+|+.  ...++|+|+....+..+.+.+...+  +. |+.+++.|+..+.....         
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~--l~-N~~~~~~~~~~~~~~~~---------  414 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN--IT-NFLLFPNNLDLILNDLP---------  414 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC--CC-eEEEEcCCHHHHHHhcC---------
Confidence            4669999999999999999985  4599999999999999988888888  86 89999998765543321         


Q ss_pred             cCCCCCCCCcccEEEECChhh------------hHHHHHHHhc-cchhhcCCCCCCCEEEE
Q psy16898        240 SEGNSTGGTAVARVIMNLPAT------------AVEYVRYLKV-LTREEFGKLSRPPVLYL  287 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~------------a~~~l~~~~~-l~~~~~~~~~~~g~vh~  287 (324)
                             ...+|.|.+|-|+-            ..+|++.+.. |++        ||.+|+
T Consensus       415 -------~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~--------gG~i~~  460 (506)
T PRK01544        415 -------NNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKD--------NGNLVF  460 (506)
T ss_pred             -------cccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCC--------CCEEEE
Confidence                   13599999998871            2367777766 665        488884

>KOG1253|consensus

Probab=98.05  E-value=3.5e-06  Score=82.23  Aligned_cols=101  Identities=19%  Similarity=0.235  Sum_probs=84.4

Q ss_pred             hhccCCCEEEEEcCCCchhHHHHHh--cCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898        158 KEVREGDLVLDVFAGVGPFSIPAAR--RGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       158 ~~~~~g~~VLDl~~G~G~~al~~a~--~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      ..-.++-+|||..|++|.-++..|+  .|. +|+|+|.++.+++..++|++.|+  +.+.++...+|+...+.....-  
T Consensus       105 ~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~--v~~ive~~~~DA~~lM~~~~~~--  180 (525)
T KOG1253|consen  105 KREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG--VEDIVEPHHSDANVLMYEHPMV--  180 (525)
T ss_pred             hhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC--chhhcccccchHHHHHHhcccc--
Confidence            3345677999999999999999998  355 99999999999999999999999  8888999999999887653210  


Q ss_pred             hhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchh
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~  274 (324)
                                  ...||+|=+||=..+-.||+++.+ ...+
T Consensus       181 ------------~~~FDvIDLDPyGs~s~FLDsAvqav~~g  209 (525)
T KOG1253|consen  181 ------------AKFFDVIDLDPYGSPSPFLDSAVQAVRDG  209 (525)
T ss_pred             ------------ccccceEecCCCCCccHHHHHHHHHhhcC
Confidence                        145999999998888899999977 5543

>KOG4300|consensus

Probab=98.05  E-value=1.9e-05  Score=69.24  Aligned_cols=113  Identities=14%  Similarity=0.018  Sum_probs=83.7

Q ss_pred             EEEEEcCCCchhHHHHH-hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeE-EEeccHHHHHHHHHHHhhhhhcccCC
Q psy16898        165 LVLDVFAGVGPFSIPAA-RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPIS-ATQKDARDFLQTDARAHLVRWSQSEG  242 (324)
Q Consensus       165 ~VLDl~~G~G~~al~~a-~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~-~~~~D~~~~~~~~~~~~~~~~~~~~~  242 (324)
                      .||++|||||+-=-..- +++++|+++|.|+.|-++|.+.++.+.  -. ++. |+.+++++...- .            
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k--~~-~~~~fvva~ge~l~~l-~------------  142 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK--PL-QVERFVVADGENLPQL-A------------  142 (252)
T ss_pred             ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc--Cc-ceEEEEeechhcCccc-c------------
Confidence            57999999998655544 478899999999999999999999886  54 566 999998876421 1            


Q ss_pred             CCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhHhhhc
Q psy16898        243 NSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSY  305 (324)
Q Consensus       243 ~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~y  305 (324)
                          ..++|.||.-+--    .+...|..++. |++        ||.+..-...+++..-+......+
T Consensus       143 ----d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRp--------gG~iifiEHva~~y~~~n~i~q~v  198 (252)
T KOG4300|consen  143 ----DGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRP--------GGRIIFIEHVAGEYGFWNRILQQV  198 (252)
T ss_pred             ----cCCeeeEEEEEEEeccCCHHHHHHHHHHhcCC--------CcEEEEEecccccchHHHHHHHHH
Confidence                2459999875422    24557777766 555        488888888888777666665443

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.93  E-value=4.7e-06  Score=72.37  Aligned_cols=59  Identities=37%  Similarity=0.386  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      .|++|||+|+|+|-.++.+++.|+ .|++.|+.|.....++.|++.|+  +.  +.+...|...
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang--v~--i~~~~~d~~g  138 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG--VS--ILFTHADLIG  138 (218)
T ss_pred             ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc--ce--eEEeeccccC
Confidence            799999999999999999999998 99999999999999999999999  75  8888888654

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.88  E-value=0.00029  Score=59.91  Aligned_cols=109  Identities=22%  Similarity=0.261  Sum_probs=76.5

Q ss_pred             HHhhc--cCCCEEEEEcCCCchhHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHH
Q psy16898        156 VTKEV--REGDLVLDVFAGVGPFSIPAARRGA---IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDA  230 (324)
Q Consensus       156 ~~~~~--~~g~~VLDl~~G~G~~al~~a~~g~---~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~  230 (324)
                      +++.+  ..|.-||++|.|||.|+-.+.++|.   .++++|.|++.+..+.+.       .+ .+.+++||+.+.-....
T Consensus        40 M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-------~p-~~~ii~gda~~l~~~l~  111 (194)
T COG3963          40 MASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-------YP-GVNIINGDAFDLRTTLG  111 (194)
T ss_pred             HHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-------CC-CccccccchhhHHHHHh
Confidence            44443  4677999999999999999999764   899999999999886431       22 57799999998754332


Q ss_pred             HHhhhhhcccCCCCCCCCcccEEEECChhh------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        231 RAHLVRWSQSEGNSTGGTAVARVIMNLPAT------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                      ..             .+..||.||+-+|-.      ..+.++.+.. +..        ||-+.-..+++.
T Consensus       112 e~-------------~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~--------gg~lvqftYgp~  160 (194)
T COG3963         112 EH-------------KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA--------GGPLVQFTYGPL  160 (194)
T ss_pred             hc-------------CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC--------CCeEEEEEecCC
Confidence            21             256799999986653      4566766655 333        355555555543

>PHA01634 hypothetical protein

Probab=97.85  E-value=3e-05  Score=62.84  Aligned_cols=47  Identities=15%  Similarity=-0.006  Sum_probs=45.4

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhC
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNE  208 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~  208 (324)
                      .+++|+|+|+++|.-++.++-+|| +|+++|.++...+..++|++.|+
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn   75 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN   75 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence            789999999999999999999998 99999999999999999999987

>KOG1541|consensus

Probab=97.83  E-value=3e-05  Score=68.67  Aligned_cols=40  Identities=20%  Similarity=0.223  Sum_probs=37.7

Q ss_pred             CCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHH
Q psy16898        163 GDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~  202 (324)
                      ..-|||+|||+|.-+-.+...|...+|+|+||.|++.|.+
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~   90 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE   90 (270)
T ss_pred             CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH
Confidence            5689999999999999999999999999999999999987

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.82  E-value=0.0004  Score=65.81  Aligned_cols=98  Identities=26%  Similarity=0.314  Sum_probs=74.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-CC-EEEEEeCCHHHHHHHHHHHHH---hCCCCC-CCeEEEeccHHHHHHHHHHHh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-GA-IVAANDLNPDSYAWLQASIRL---NERQVK-TPISATQKDARDFLQTDARAH  233 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g~-~V~avD~~~~a~~~a~~N~~~---n~~~l~-~~v~~~~~D~~~~~~~~~~~~  233 (324)
                      ++.-++||-+|.|-|--...+.|. +. +|+-||++|+|++.+++|..+   |+..+. .++++++.|+..|++...   
T Consensus       287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~---  363 (508)
T COG4262         287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA---  363 (508)
T ss_pred             ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc---
Confidence            455679999999999999999884 34 999999999999999977643   321133 389999999999998743   


Q ss_pred             hhhhcccCCCCCCCCcccEEEECChhh---------hHHHHHHHhc-cchh
Q psy16898        234 LVRWSQSEGNSTGGTAVARVIMNLPAT---------AVEYVRYLKV-LTRE  274 (324)
Q Consensus       234 ~~~~~~~~~~~~~~~~fD~Vi~npP~~---------a~~~l~~~~~-l~~~  274 (324)
                                    ..||.||.|+|+-         +.+|-..++. +++.
T Consensus       364 --------------~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~  400 (508)
T COG4262         364 --------------DMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAET  400 (508)
T ss_pred             --------------ccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcC
Confidence                          3599999998872         2356555554 6554

>KOG1663|consensus

Probab=97.82  E-value=0.00012  Score=65.20  Aligned_cols=84  Identities=14%  Similarity=0.107  Sum_probs=72.1

Q ss_pred             CCCEEEEEcCCCchhHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR---RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~---~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      ..+++||+|..||+-++..|.   .+.+|+++|+|+++++++.+=.+.-+  +.++++++.+++.+.+.++..+.     
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag--v~~KI~~i~g~a~esLd~l~~~~-----  145 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG--VDHKITFIEGPALESLDELLADG-----  145 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc--ccceeeeeecchhhhHHHHHhcC-----
Confidence            567999999999999888887   46799999999999999999888888  88899999999999999877642     


Q ss_pred             ccCCCCCCCCcccEEEECChh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPA  259 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~  259 (324)
                             ....||.+++|-=.
T Consensus       146 -------~~~tfDfaFvDadK  159 (237)
T KOG1663|consen  146 -------ESGTFDFAFVDADK  159 (237)
T ss_pred             -------CCCceeEEEEccch
Confidence                   13569999998533

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.79  E-value=3.5e-05  Score=66.69  Aligned_cols=118  Identities=20%  Similarity=0.189  Sum_probs=67.7

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      ++.+|||+||++|+|+-.+++++   ++|+|+|+.+.           ..  .. ++.++++|..+.....   .+....
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~--~~-~~~~i~~d~~~~~~~~---~i~~~~   85 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DP--LQ-NVSFIQGDITNPENIK---DIRKLL   85 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS---T-TEEBTTGGGEEEEHSH---HGGGSH
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------cc--cc-ceeeeecccchhhHHH---hhhhhc
Confidence            34899999999999999999987   59999999986           22  33 5777778875421110   111110


Q ss_pred             ccCCCCCCCCcccEEEECC-----------hhhhHHHHHHHhccchhhcCCCCCCCEEEEEEcccCCChhHHhHhhh
Q psy16898        239 QSEGNSTGGTAVARVIMNL-----------PATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKS  304 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~np-----------P~~a~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~  304 (324)
                      .     .....+|.|++|.           .............+   .+..+++||.+.+-.|...+.......++.
T Consensus        86 ~-----~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~---a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~  154 (181)
T PF01728_consen   86 P-----ESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLL---ALELLKPGGTFVIKVFKGPEIEELIYLLKR  154 (181)
T ss_dssp             G-----TTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHH---HHHHHCTTEEEEEEESSSTTSHHHHHHHHH
T ss_pred             c-----ccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHH---HHhhhcCCCEEEEEeccCccHHHHHHHHHh
Confidence            0     0124699999998           22222211111110   011234569888888887655555555443

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.77  E-value=0.00015  Score=64.33  Aligned_cols=64  Identities=17%  Similarity=0.173  Sum_probs=43.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh-cCC-EEEEEeCCHHHHHHHHHHHHH-------hCCCC-CCCeEEEeccHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR-RGA-IVAANDLNPDSYAWLQASIRL-------NERQV-KTPISATQKDARDF  225 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~-~g~-~V~avD~~~~a~~~a~~N~~~-------n~~~l-~~~v~~~~~D~~~~  225 (324)
                      +.++++++|||||+|...+.+|. .++ +++|||+.+...+.|+.+.+.       .+  . ..++++.++|..+.
T Consensus        40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g--~~~~~v~l~~gdfl~~  113 (205)
T PF08123_consen   40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYG--KRPGKVELIHGDFLDP  113 (205)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCT--B---EEEEECS-TTTH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhh--cccccceeeccCcccc
Confidence            56889999999999999988876 466 799999999999888765542       23  2 23688899997653

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.77  E-value=0.00042  Score=61.16  Aligned_cols=124  Identities=20%  Similarity=0.160  Sum_probs=79.0

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH--HHHHHHHhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA---IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF--LQTDARAHL  234 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~---~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~--~~~~~~~~~  234 (324)
                      +.+|.+|+||||-.|+++..++++..   .|+|+|+.|-           -.  +. ++.++.+|+.+-  ....... +
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~--~~-~V~~iq~d~~~~~~~~~l~~~-l  107 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KP--IP-GVIFLQGDITDEDTLEKLLEA-L  107 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------cc--CC-CceEEeeeccCccHHHHHHHH-c
Confidence            56899999999999999999998532   5999999983           12  33 689999998653  2221111 1


Q ss_pred             hhhcccCCCCCCCCcccEEEECChh--hhHHHHHHHhc--cch----hhcCCCCCCCEEEEEEcccCCChhHHhHhhhcC
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNLPA--TAVEYVRYLKV--LTR----EEFGKLSRPPVLYLYCFLPKMDLETKKKIKSYD  306 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~npP~--~a~~~l~~~~~--l~~----~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~y~  306 (324)
                      .           ...+|+|++|+-.  ....-.+.++.  |..    .....++++|.+.+-.|...........++.+.
T Consensus       108 ~-----------~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F  176 (205)
T COG0293         108 G-----------GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLF  176 (205)
T ss_pred             C-----------CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhh
Confidence            0           1236999988633  11111111111  000    001235567999999999998888888876554


Q ss_pred             CCc
Q psy16898        307 PSY  309 (324)
Q Consensus       307 ~~~  309 (324)
                      ..+
T Consensus       177 ~~v  179 (205)
T COG0293         177 RKV  179 (205)
T ss_pred             cee
Confidence            333

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.75  E-value=7.3e-05  Score=70.75  Aligned_cols=83  Identities=18%  Similarity=0.235  Sum_probs=59.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +.+|.++||+||++|+|+-.++++|++|+|||..+-     ..++..+     .+|+.+.+|...+.+.           
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l-----~~~L~~~-----~~V~h~~~d~fr~~p~-----------  267 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPM-----AQSLMDT-----GQVEHLRADGFKFRPP-----------  267 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhc-----CHhhhCC-----CCEEEEeccCcccCCC-----------
Confidence            358999999999999999999999999999996652     2223222     3799999998876542           


Q ss_pred             cCCCCCCCCcccEEEECChhhhHHHHHHHhc
Q psy16898        240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKV  270 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~  270 (324)
                             ...+|.+++|.-..+......+..
T Consensus       268 -------~~~vDwvVcDmve~P~rva~lm~~  291 (357)
T PRK11760        268 -------RKNVDWLVCDMVEKPARVAELMAQ  291 (357)
T ss_pred             -------CCCCCEEEEecccCHHHHHHHHHH
Confidence                   134999999964443334444433

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.73  E-value=0.00046  Score=64.21  Aligned_cols=100  Identities=12%  Similarity=0.128  Sum_probs=78.1

Q ss_pred             CEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCC-CCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        164 DLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQ-VKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~-l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      ++||-+|.|.|+.+-.+++..  .+++.||+++..++.+++-+..-... .+.+++++.+|+.+++.+..          
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~----------  147 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE----------  147 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC----------
Confidence            599999999999999999965  49999999999999999876543210 22589999999999998742          


Q ss_pred             CCCCCCCCcccEEEECC--hh------hhHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        241 EGNSTGGTAVARVIMNL--PA------TAVEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~np--P~------~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                             ..||+||+|.  |.      ...+|.+..+. |++.        |++..-
T Consensus       148 -------~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~--------Gi~v~q  189 (282)
T COG0421         148 -------EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKED--------GIFVAQ  189 (282)
T ss_pred             -------CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCC--------cEEEEe
Confidence                   2599999984  32      14678888876 7765        776655

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.73  E-value=4.2e-05  Score=71.00  Aligned_cols=72  Identities=24%  Similarity=0.379  Sum_probs=55.5

Q ss_pred             EEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCC
Q psy16898        165 LVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGN  243 (324)
Q Consensus       165 ~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~  243 (324)
                      +|+|||||.|++++.+.+.|. .|.++|+++.|++..+.|..  +       .++++|+.++.....             
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~--~-------~~~~~Di~~~~~~~~-------------   59 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP--N-------KLIEGDITKIDEKDF-------------   59 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC--C-------CCccCccccCchhhc-------------
Confidence            689999999999999988888 68999999999998887653  1       155677776543211             


Q ss_pred             CCCCCcccEEEECChhhh
Q psy16898        244 STGGTAVARVIMNLPATA  261 (324)
Q Consensus       244 ~~~~~~fD~Vi~npP~~a  261 (324)
                         ...+|.++..||...
T Consensus        60 ---~~~~D~l~~gpPCq~   74 (275)
T cd00315          60 ---IPDIDLLTGGFPCQP   74 (275)
T ss_pred             ---CCCCCEEEeCCCChh
Confidence               124999999999853

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PRK11524 putative methyltransferase; Provisional

Probab=97.70  E-value=8.8e-05  Score=69.15  Aligned_cols=51  Identities=22%  Similarity=0.244  Sum_probs=45.2

Q ss_pred             HHhhc-cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH
Q psy16898        156 VTKEV-REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRL  206 (324)
Q Consensus       156 ~~~~~-~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~  206 (324)
                      ++... .+|+.|||.|||+|+.++.+.+.|.+.+|+|++++.++.|++.+..
T Consensus       201 lI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        201 IILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            44433 4899999999999999999999999999999999999999998753

>KOG3010|consensus

Probab=97.69  E-value=5.9e-05  Score=67.65  Aligned_cols=104  Identities=17%  Similarity=0.187  Sum_probs=65.4

Q ss_pred             hhccCCC-EEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        158 KEVREGD-LVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       158 ~~~~~g~-~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ....++. .++|+|||+|.-++.+|..-.+|+|+|+|+.|++.|++.-...-  .....++...+..+++..        
T Consensus        28 a~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y--~~t~~~ms~~~~v~L~g~--------   97 (261)
T KOG3010|consen   28 ASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTY--CHTPSTMSSDEMVDLLGG--------   97 (261)
T ss_pred             HhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCccc--ccCCccccccccccccCC--------
Confidence            3344554 89999999996667777766699999999999998876433221  111233333444433321        


Q ss_pred             hcccCCCCCCCCcccEEEE-------CChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        237 WSQSEGNSTGGTAVARVIM-------NLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~-------npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                ..+.|.|++       |++.    |...+.. |++       +||++.+.++..
T Consensus        98 ----------e~SVDlI~~Aqa~HWFdle~----fy~~~~rvLRk-------~Gg~iavW~Y~d  140 (261)
T KOG3010|consen   98 ----------EESVDLITAAQAVHWFDLER----FYKEAYRVLRK-------DGGLIAVWNYND  140 (261)
T ss_pred             ----------CcceeeehhhhhHHhhchHH----HHHHHHHHcCC-------CCCEEEEEEccC
Confidence                      245888876       3443    4444444 554       477988888874

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=97.69  E-value=9.1e-05  Score=65.60  Aligned_cols=43  Identities=26%  Similarity=0.418  Sum_probs=36.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~  202 (324)
                      -.+|+.|||.|||+|+.++++.+.|.+.+|+|+++..++.|++
T Consensus       189 t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  189 TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            4589999999999999999999999999999999999999875

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.57  E-value=0.00038  Score=65.31  Aligned_cols=94  Identities=12%  Similarity=0.173  Sum_probs=74.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.+|+.++|.-+|-|+.+..+++.  .++|+|+|.++.|++.++++++..+    +++++++++..++........    
T Consensus        18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~----~R~~~i~~nF~~l~~~l~~~~----   89 (305)
T TIGR00006        18 IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE----GRVVLIHDNFANFFEHLDELL----   89 (305)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC----CcEEEEeCCHHHHHHHHHhcC----
Confidence            357889999999999999999985  3699999999999999999886433    479999999988765432210    


Q ss_pred             cccCCCCCCCCcccEEEECChhhhHHHHHHHhc
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV  270 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~  270 (324)
                               ...+|.|++|+=-++.++-+.-++
T Consensus        90 ---------~~~vDgIl~DLGvSS~Qld~~~RG  113 (305)
T TIGR00006        90 ---------VTKIDGILVDLGVSSPQLDDPERG  113 (305)
T ss_pred             ---------CCcccEEEEeccCCHhhcCCCCCC
Confidence                     134999999987777666666666

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.53  E-value=0.0002  Score=63.58  Aligned_cols=70  Identities=16%  Similarity=0.226  Sum_probs=62.4

Q ss_pred             HHhhccCCCEEEEEcCCCchhHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHH
Q psy16898        156 VTKEVREGDLVLDVFAGVGPFSIPAARRGA--IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQ  227 (324)
Q Consensus       156 ~~~~~~~g~~VLDl~~G~G~~al~~a~~g~--~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~  227 (324)
                      +++.++.+..++|+||--|++++.+.+.+.  .+++.|+++..++.|.+|+..++  +.+++++..+|....+.
T Consensus        10 va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~--l~~~i~vr~~dgl~~l~   81 (226)
T COG2384          10 VANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN--LSERIDVRLGDGLAVLE   81 (226)
T ss_pred             HHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC--CcceEEEeccCCccccC
Confidence            556778888899999999999999999653  99999999999999999999999  88899999999866544

>PRK13699 putative methylase; Provisional

Probab=97.53  E-value=0.00028  Score=63.71  Aligned_cols=52  Identities=21%  Similarity=0.217  Sum_probs=45.2

Q ss_pred             HHhh-ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh
Q psy16898        156 VTKE-VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLN  207 (324)
Q Consensus       156 ~~~~-~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n  207 (324)
                      ++.. -.+|+.|||.|||+|+.++.+.+.|.+.+|+|+++..++.+.+.++.-
T Consensus       156 ~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        156 LIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence            4443 458999999999999999999999999999999999999998877643

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.52  E-value=0.00025  Score=67.51  Aligned_cols=101  Identities=14%  Similarity=0.085  Sum_probs=63.0

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHhCCC-------CCCCeEEEeccHHHHHHHHHHHh
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRG-AIVAANDLNPDSYAWLQASIRLNERQ-------VKTPISATQKDARDFLQTDARAH  233 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g-~~V~avD~~~~a~~~a~~N~~~n~~~-------l~~~v~~~~~D~~~~~~~~~~~~  233 (324)
                      ++.+|||||||-|+=..-..+.+ ..++|+|++..+++.|++..+..+++       ..=...++.+|+..-.   ..+.
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~---l~~~  138 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSES---LREK  138 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSH---HHCT
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccch---hhhh
Confidence            68899999999888666666554 49999999999999999988321100       1114678888886421   1110


Q ss_pred             hhhhcccCCCCCCCCcccEEEECC--------hhhhHHHHHHHhc-cchh
Q psy16898        234 LVRWSQSEGNSTGGTAVARVIMNL--------PATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       234 ~~~~~~~~~~~~~~~~fD~Vi~np--------P~~a~~~l~~~~~-l~~~  274 (324)
                      +.         .....||+|-|-.        ...+..++..+.. |+++
T Consensus       139 ~~---------~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~G  179 (331)
T PF03291_consen  139 LP---------PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPG  179 (331)
T ss_dssp             SS---------STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred             cc---------ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence            00         0124699998742        2345668888776 7775

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG1661|consensus

Probab=97.48  E-value=0.00025  Score=62.39  Aligned_cols=96  Identities=21%  Similarity=0.220  Sum_probs=68.9

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCC------CCC-CCeEEEeccHHHHHH
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNER------QVK-TPISATQKDARDFLQ  227 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~------~l~-~~v~~~~~D~~~~~~  227 (324)
                      .+.+|...||+|+|+|+++..+++    .|..++|||.-++.++++++|+...-.      .++ .++.++.+|.+....
T Consensus        79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~  158 (237)
T KOG1661|consen   79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA  158 (237)
T ss_pred             hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence            478999999999999999998886    244569999999999999999975320      011 367888999887544


Q ss_pred             HHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchh
Q psy16898        228 TDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~  274 (324)
                      +.                  ..||.|-+-  +.+.+..+.+.. |+++
T Consensus       159 e~------------------a~YDaIhvG--Aaa~~~pq~l~dqL~~g  186 (237)
T KOG1661|consen  159 EQ------------------APYDAIHVG--AAASELPQELLDQLKPG  186 (237)
T ss_pred             cc------------------CCcceEEEc--cCccccHHHHHHhhccC
Confidence            42                  349999886  223344444444 5544

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.46  E-value=0.0019  Score=56.43  Aligned_cols=99  Identities=18%  Similarity=0.144  Sum_probs=71.1

Q ss_pred             ccCCC-EEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGD-LVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~-~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.... +++|+|+|-|-=|+++|-  ...+|+.+|.+..-+..+++-+..-+  ++ |++++++.+.+  ...       
T Consensus        45 ~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~--L~-nv~v~~~R~E~--~~~-------  112 (184)
T PF02527_consen   45 LPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG--LS-NVEVINGRAEE--PEY-------  112 (184)
T ss_dssp             S-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT---S-SEEEEES-HHH--TTT-------
T ss_pred             hccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC--CC-CEEEEEeeecc--ccc-------
Confidence            44444 899999999998888875  45699999999999999999888888  87 89999999998  110       


Q ss_pred             hcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                                ...||.|++=-=.....+++.... ++++        |.+.+|
T Consensus       113 ----------~~~fd~v~aRAv~~l~~l~~~~~~~l~~~--------G~~l~~  147 (184)
T PF02527_consen  113 ----------RESFDVVTARAVAPLDKLLELARPLLKPG--------GRLLAY  147 (184)
T ss_dssp             ----------TT-EEEEEEESSSSHHHHHHHHGGGEEEE--------EEEEEE
T ss_pred             ----------CCCccEEEeehhcCHHHHHHHHHHhcCCC--------CEEEEE
Confidence                      245999998533222346666665 5543        666555

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.44  E-value=8.8e-05  Score=66.11  Aligned_cols=72  Identities=15%  Similarity=0.116  Sum_probs=54.3

Q ss_pred             CEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCC
Q psy16898        164 DLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGN  243 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~  243 (324)
                      .++||||||||-++..+-....+.+|+|+|..|++.|.+.    +  +-  =+...+|+..|+....             
T Consensus       127 ~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eK----g--~Y--D~L~~Aea~~Fl~~~~-------------  185 (287)
T COG4976         127 RRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEK----G--LY--DTLYVAEAVLFLEDLT-------------  185 (287)
T ss_pred             ceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhc----c--ch--HHHHHHHHHHHhhhcc-------------
Confidence            6999999999999999988888999999999999998652    2  22  2455677777665321             


Q ss_pred             CCCCCcccEEEEC--Chh
Q psy16898        244 STGGTAVARVIMN--LPA  259 (324)
Q Consensus       244 ~~~~~~fD~Vi~n--pP~  259 (324)
                         ..+||.|+.-  +|+
T Consensus       186 ---~er~DLi~AaDVl~Y  200 (287)
T COG4976         186 ---QERFDLIVAADVLPY  200 (287)
T ss_pred             ---CCcccchhhhhHHHh
Confidence               3569988763  455

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.43  E-value=0.00012  Score=73.35  Aligned_cols=102  Identities=16%  Similarity=0.264  Sum_probs=69.5

Q ss_pred             eecCcChHHHHH-HHhhc--cCCCEEEEEcCCCchhHHHHHhc----C--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCC
Q psy16898        144 YWNSRLSTEHER-VTKEV--REGDLVLDVFAGVGPFSIPAARR----G--AIVAANDLNPDSYAWLQASIRLNERQVKTP  214 (324)
Q Consensus       144 f~~~r~~~e~~~-~~~~~--~~g~~VLDl~~G~G~~al~~a~~----g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~  214 (324)
                      |+.|+   +.-+ +++.+  .+..+|+|.+||+|++-+.+++.    .  ...+|.|+++..+..++.|+-.++  +..+
T Consensus       168 fyTP~---~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg--i~~~  242 (489)
T COG0286         168 FYTPR---EVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG--IEGD  242 (489)
T ss_pred             cCChH---HHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC--CCcc
Confidence            45566   4333 33333  36779999999999999888762    1  579999999999999999999999  7533


Q ss_pred             eEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHH
Q psy16898        215 ISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVE  263 (324)
Q Consensus       215 v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~  263 (324)
                      +....+|...-+.....             .....||.|++|||.+...
T Consensus       243 ~~i~~~dtl~~~~~~~~-------------~~~~~~D~viaNPPf~~~~  278 (489)
T COG0286         243 ANIRHGDTLSNPKHDDK-------------DDKGKFDFVIANPPFSGKG  278 (489)
T ss_pred             ccccccccccCCccccc-------------CCccceeEEEeCCCCCccc
Confidence            44555554322111000             0124599999999996443

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.43  E-value=0.00043  Score=57.63  Aligned_cols=64  Identities=22%  Similarity=0.119  Sum_probs=49.0

Q ss_pred             cCCCEEEEEcCCCchhHHHHHh------cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        161 REGDLVLDVFAGVGPFSIPAAR------RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~------~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      .+...|+|+|||-|.++..++.      .+.+|+|+|.++..++.+.+..+..+..+..+.++..++..+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   93 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD   93 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence            4577999999999999999998      366999999999999999888876551122345555555443

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.43  E-value=0.0032  Score=56.19  Aligned_cols=110  Identities=21%  Similarity=0.169  Sum_probs=71.9

Q ss_pred             ecCcChHHHHHHHhh-----ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeE
Q psy16898        145 WNSRLSTEHERVTKE-----VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPIS  216 (324)
Q Consensus       145 ~~~r~~~e~~~~~~~-----~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~  216 (324)
                      |||.-+.--..++..     +++|.+||-||+.+|+...+++.-   ...|+|||.|+.+.+.+-.=++.-.     |+-
T Consensus        51 W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~-----NIi  125 (229)
T PF01269_consen   51 WNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP-----NII  125 (229)
T ss_dssp             E-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST-----TEE
T ss_pred             cCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC-----cee
Confidence            777644432233322     558999999999999999999982   3499999999999888875554332     799


Q ss_pred             EEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECC--hhhhHHHHHHHhc-cchh
Q psy16898        217 ATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNL--PATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       217 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~np--P~~a~~~l~~~~~-l~~~  274 (324)
                      .+-+||+.-..-.   .+            -...|+|+.|.  |..+.-++..+.. ||++
T Consensus       126 PIl~DAr~P~~Y~---~l------------v~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~g  171 (229)
T PF01269_consen  126 PILEDARHPEKYR---ML------------VEMVDVIFQDVAQPDQARIAALNARHFLKPG  171 (229)
T ss_dssp             EEES-TTSGGGGT---TT------------S--EEEEEEE-SSTTHHHHHHHHHHHHEEEE
T ss_pred             eeeccCCChHHhh---cc------------cccccEEEecCCChHHHHHHHHHHHhhccCC
Confidence            9999998522210   01            23599999996  5555567777766 7765

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.42  E-value=0.0016  Score=58.81  Aligned_cols=79  Identities=18%  Similarity=0.156  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .|++||=+|=+ -..|+++|.  ..++|+-+|+++..+++.++.++..+  ++  ++.+..|+++-+++..         
T Consensus        44 ~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g--l~--i~~~~~DlR~~LP~~~---------  109 (243)
T PF01861_consen   44 EGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG--LP--IEAVHYDLRDPLPEEL---------  109 (243)
T ss_dssp             TT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTT---------
T ss_pred             cCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC--Cc--eEEEEecccccCCHHH---------
Confidence            68899877733 344555554  45699999999999999999999999  86  9999999998766532         


Q ss_pred             cCCCCCCCCcccEEEECChhhh
Q psy16898        240 SEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                             ..+||.++.|||+..
T Consensus       110 -------~~~fD~f~TDPPyT~  124 (243)
T PF01861_consen  110 -------RGKFDVFFTDPPYTP  124 (243)
T ss_dssp             -------SS-BSEEEE---SSH
T ss_pred             -------hcCCCEEEeCCCCCH
Confidence                   245999999999953

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=97.40  E-value=0.00038  Score=65.29  Aligned_cols=70  Identities=26%  Similarity=0.406  Sum_probs=52.1

Q ss_pred             EEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCC
Q psy16898        165 LVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGN  243 (324)
Q Consensus       165 ~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~  243 (324)
                      +++|||||.|++++.+.+.|. -|.|+|+++.|.+..+.|..          ....+|+.++-......           
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~----------~~~~~Di~~~~~~~l~~-----------   60 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP----------EVICGDITEIDPSDLPK-----------   60 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT----------EEEESHGGGCHHHHHHH-----------
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc----------ccccccccccccccccc-----------
Confidence            689999999999999999887 78999999999888877664          45677888765553321           


Q ss_pred             CCCCCcccEEEECChhh
Q psy16898        244 STGGTAVARVIMNLPAT  260 (324)
Q Consensus       244 ~~~~~~fD~Vi~npP~~  260 (324)
                           .+|+++.-||..
T Consensus        61 -----~~D~l~ggpPCQ   72 (335)
T PF00145_consen   61 -----DVDLLIGGPPCQ   72 (335)
T ss_dssp             -----T-SEEEEE---T
T ss_pred             -----cceEEEeccCCc
Confidence                 289999999973

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.36  E-value=0.00076  Score=60.85  Aligned_cols=81  Identities=22%  Similarity=0.270  Sum_probs=51.3

Q ss_pred             ccCCC--EEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHH---HHHhCCCC----CCCeEEEeccHHHHHHHHH
Q psy16898        160 VREGD--LVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQAS---IRLNERQV----KTPISATQKDARDFLQTDA  230 (324)
Q Consensus       160 ~~~g~--~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N---~~~n~~~l----~~~v~~~~~D~~~~~~~~~  230 (324)
                      +++|.  +|||+-||-|.=|+.+|..|++|+++|-||-....++.-   +..+.. .    ..+++++++|+.+++.. .
T Consensus        71 lk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~-~~~~~~~ri~l~~~d~~~~L~~-~  148 (234)
T PF04445_consen   71 LKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPE-LLAEAMRRIQLIHGDALEYLRQ-P  148 (234)
T ss_dssp             -BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTT-THHHHHHHEEEEES-CCCHCCC-H
T ss_pred             CCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcH-hHHHHHhCCEEEcCCHHHHHhh-c
Confidence            34553  899999999999999998899999999999876665543   333220 1    13799999999998872 1


Q ss_pred             HHhhhhhcccCCCCCCCCcccEEEECCh
Q psy16898        231 RAHLVRWSQSEGNSTGGTAVARVIMNLP  258 (324)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~fD~Vi~npP  258 (324)
                                      ...||+|.+||=
T Consensus       149 ----------------~~s~DVVY~DPM  160 (234)
T PF04445_consen  149 ----------------DNSFDVVYFDPM  160 (234)
T ss_dssp             ----------------SS--SEEEE--S
T ss_pred             ----------------CCCCCEEEECCC
Confidence                            245999999983

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.32  E-value=0.00078  Score=60.97  Aligned_cols=95  Identities=20%  Similarity=0.198  Sum_probs=67.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.+..+|+|+|+|.|.++..+++  .+.+++..|+ |..++.+++     .    ++++++.+|.++-+           
T Consensus        98 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~----~rv~~~~gd~f~~~-----------  156 (241)
T PF00891_consen   98 FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----A----DRVEFVPGDFFDPL-----------  156 (241)
T ss_dssp             TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----T----TTEEEEES-TTTCC-----------
T ss_pred             ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----c----cccccccccHHhhh-----------
Confidence            34667999999999999999998  4679999999 888888877     3    37999999987311           


Q ss_pred             cccCCCCCCCCcccEEEEC------ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        238 SQSEGNSTGGTAVARVIMN------LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~n------pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                               +. +|+|++.      ++..+...|..+.. ++++      +.|.|.+..+.
T Consensus       157 ---------P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg------~~g~llI~e~~  201 (241)
T PF00891_consen  157 ---------PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPG------KDGRLLIIEMV  201 (241)
T ss_dssp             ---------SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEEC------TTEEEEEEEEE
T ss_pred             ---------cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCC------CCCeEEEEeec
Confidence                     23 8988873      45557778888877 7753      11666666554

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG2361|consensus

Probab=97.31  E-value=0.0003  Score=63.23  Aligned_cols=92  Identities=20%  Similarity=0.239  Sum_probs=61.7

Q ss_pred             EEEEEcCCCchhHHHHHhc----CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        165 LVLDVFAGVGPFSIPAARR----GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       165 ~VLDl~~G~G~~al~~a~~----g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      ++|++|||+|....++.+-    +-+|+|+|.||.|++..++|...+-    .++.....|+..--   ...        
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e----~~~~afv~Dlt~~~---~~~--------  138 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE----SRVEAFVWDLTSPS---LKE--------  138 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch----hhhcccceeccchh---ccC--------
Confidence            7999999999999999982    3589999999999999999887654    23444444433211   000        


Q ss_pred             CCCCCCCCcccEEEEC------ChhhhHHHHHHHhc-cchh
Q psy16898        241 EGNSTGGTAVARVIMN------LPATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~n------pP~~a~~~l~~~~~-l~~~  274 (324)
                         ......+|.|+|=      +|......++.+.. +||+
T Consensus       139 ---~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPG  176 (264)
T KOG2361|consen  139 ---PPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPG  176 (264)
T ss_pred             ---CCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCC
Confidence               1113458877662      56555556666665 6665

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.28  E-value=0.013  Score=51.49  Aligned_cols=148  Identities=19%  Similarity=0.177  Sum_probs=93.9

Q ss_pred             ecCcChHHHHHHHhh-----ccCCCEEEEEcCCCchhHHHHHh-cC-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEE
Q psy16898        145 WNSRLSTEHERVTKE-----VREGDLVLDVFAGVGPFSIPAAR-RG-AIVAANDLNPDSYAWLQASIRLNERQVKTPISA  217 (324)
Q Consensus       145 ~~~r~~~e~~~~~~~-----~~~g~~VLDl~~G~G~~al~~a~-~g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~  217 (324)
                      ||++-+.--..++.-     +++|++||=||+.+|+..-+.+. -| ..|+|||.++.....+-.-++.-.     |+-.
T Consensus        54 Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~-----Ni~P  128 (231)
T COG1889          54 WNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP-----NIIP  128 (231)
T ss_pred             eCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC-----Ccee
Confidence            777644322234332     45899999999999999999998 34 489999999999888766665432     7889


Q ss_pred             EeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECC--hhhhHHHHHHHhc-cchhhcCCCCCCCE--EEEEEcc-
Q psy16898        218 TQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNL--PATAVEYVRYLKV-LTREEFGKLSRPPV--LYLYCFL-  291 (324)
Q Consensus       218 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~np--P~~a~~~l~~~~~-l~~~~~~~~~~~g~--vh~y~f~-  291 (324)
                      +.+||+.-..-.   .+            -...|+|..|-  |..+.-+...+.. |+++        |.  +.+-.-| 
T Consensus       129 IL~DA~~P~~Y~---~~------------Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~--------G~~~i~iKArSI  185 (231)
T COG1889         129 ILEDARKPEKYR---HL------------VEKVDVIYQDVAQPNQAEILADNAEFFLKKG--------GYVVIAIKARSI  185 (231)
T ss_pred             eecccCCcHHhh---hh------------cccccEEEEecCCchHHHHHHHHHHHhcccC--------CeEEEEEEeecc
Confidence            999997532211   11            13489999996  5555557777666 5554        53  3333222 


Q ss_pred             ---cCCChhHHhHhhhcCCCceEEEEeecccCC
Q psy16898        292 ---PKMDLETKKKIKSYDPSYATLIRGIRRLSS  321 (324)
Q Consensus       292 ---~~~~~~~~~~v~~y~~~~~~~i~~~~~~~~  321 (324)
                         ...+..+.+.+++...+. +.|+++.++.|
T Consensus       186 dvT~dp~~vf~~ev~kL~~~~-f~i~e~~~LeP  217 (231)
T COG1889         186 DVTADPEEVFKDEVEKLEEGG-FEILEVVDLEP  217 (231)
T ss_pred             cccCCHHHHHHHHHHHHHhcC-ceeeEEeccCC
Confidence               223344555665544433 45555555544

>KOG2198|consensus

Probab=97.27  E-value=0.00084  Score=63.85  Aligned_cols=142  Identities=18%  Similarity=0.184  Sum_probs=88.2

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhcCC------EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARRGA------IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA  232 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~g~------~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~  232 (324)
                      .+++|++|||+|+..|+-++.+....+      .|+|+|.++.-+..+++-++.-.  - .++.+.+.|+..+......+
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~--~-~~~~v~~~~~~~~p~~~~~~  228 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP--S-PNLLVTNHDASLFPNIYLKD  228 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC--C-cceeeecccceecccccccc
Confidence            367999999999999999988777432      89999999999999988775433  2 36677777776654432100


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECChhhhH-------HHHHH----Hh--ccchhh-------cCCCCCCCEEEEEEccc
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNLPATAV-------EYVRY----LK--VLTREE-------FGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~-------~~l~~----~~--~l~~~~-------~~~~~~~g~vh~y~f~~  292 (324)
                               ++......||.|++|-|.+.-       .++..    -+  +|...+       +..++.||.+...+|+-
T Consensus       229 ---------~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL  299 (375)
T KOG2198|consen  229 ---------GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL  299 (375)
T ss_pred             ---------CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence                     000123469999999998532       22222    11  122221       34577889888777766


Q ss_pred             C--CCh-hHHhHhhhcCCCceEE
Q psy16898        293 K--MDL-ETKKKIKSYDPSYATL  312 (324)
Q Consensus       293 ~--~~~-~~~~~v~~y~~~~~~~  312 (324)
                      .  +++ -..+.+++.....++.
T Consensus       300 npieNEaVV~~~L~~~~~~~~lv  322 (375)
T KOG2198|consen  300 NPIENEAVVQEALQKVGGAVELV  322 (375)
T ss_pred             CchhhHHHHHHHHHHhcCcccce
Confidence            4  222 2233344555444443

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.26  E-value=0.0009  Score=52.51  Aligned_cols=96  Identities=15%  Similarity=0.088  Sum_probs=39.5

Q ss_pred             EEEcCCCchhHHHHHh---cC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        167 LDVFAGVGPFSIPAAR---RG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       167 LDl~~G~G~~al~~a~---~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      |++|+..|..++.+++   .+  .+++++|..+. .+.++++++..+  +.++++++.+|..+.+.....          
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~--~~~~~~~~~g~s~~~l~~~~~----------   67 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG--LSDRVEFIQGDSPDFLPSLPD----------   67 (106)
T ss_dssp             --------------------------EEEESS-------------GG--G-BTEEEEES-THHHHHHHHH----------
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC--CCCeEEEEEcCcHHHHHHcCC----------
Confidence            5789999998888776   22  27999999996 444555555555  666899999999998776541          


Q ss_pred             CCCCCCCcccEEEECChhh---hHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        242 GNSTGGTAVARVIMNLPAT---AVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~npP~~---a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                            ..+|.+++|-+..   ....+..+.. +++        +|++.++.
T Consensus        68 ------~~~dli~iDg~H~~~~~~~dl~~~~~~l~~--------ggviv~dD  105 (106)
T PF13578_consen   68 ------GPIDLIFIDGDHSYEAVLRDLENALPRLAP--------GGVIVFDD  105 (106)
T ss_dssp             --------EEEEEEES---HHHHHHHHHHHGGGEEE--------EEEEEEE-
T ss_pred             ------CCEEEEEECCCCCHHHHHHHHHHHHHHcCC--------CeEEEEeC
Confidence                  3499999997643   2333333333 554        37776653

>KOG2899|consensus

Probab=97.23  E-value=0.00049  Score=61.87  Aligned_cols=55  Identities=20%  Similarity=0.283  Sum_probs=45.4

Q ss_pred             HHHHHHh-hccCCCEEEEEcCCCchhHHHHHhc-CC-EEEEEeCCHHHHHHHHHHHHH
Q psy16898        152 EHERVTK-EVREGDLVLDVFAGVGPFSIPAARR-GA-IVAANDLNPDSYAWLQASIRL  206 (324)
Q Consensus       152 e~~~~~~-~~~~g~~VLDl~~G~G~~al~~a~~-g~-~V~avD~~~~a~~~a~~N~~~  206 (324)
                      .|.+.++ ....+..+||+||..|.+++.+|+. |+ .|+|+||++..++.|++|++.
T Consensus        47 ~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~  104 (288)
T KOG2899|consen   47 PRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF  104 (288)
T ss_pred             hhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence            4444443 2346778999999999999999994 55 899999999999999999874

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.22  E-value=0.0046  Score=55.22  Aligned_cols=106  Identities=19%  Similarity=0.086  Sum_probs=76.0

Q ss_pred             CCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        163 GDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      +.+++|+|+|.|-=|+++|-  ...+|+-+|.+..-+..+++-.+.-+  ++ |++++++.+.++..+.           
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~--L~-nv~i~~~RaE~~~~~~-----------  133 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG--LE-NVEIVHGRAEEFGQEK-----------  133 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC--CC-CeEEehhhHhhccccc-----------
Confidence            68999999999999999774  45579999999999999999888888  87 8999999999875531           


Q ss_pred             CCCCCCCCcccEEEECChhhhHHHHHHHhccchhhcCCCCCCCEEEEEEcccCCCh
Q psy16898        241 EGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDL  296 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~  296 (324)
                             ..||+|++--=+.--.+.+-...       .++.+|.+..|-+....+.
T Consensus       134 -------~~~D~vtsRAva~L~~l~e~~~p-------llk~~g~~~~~k~~~~~~e  175 (215)
T COG0357         134 -------KQYDVVTSRAVASLNVLLELCLP-------LLKVGGGFLAYKGLAGKDE  175 (215)
T ss_pred             -------ccCcEEEeehccchHHHHHHHHH-------hcccCCcchhhhHHhhhhh
Confidence                   11899987322211122222222       2334577777777665443

>KOG1501|consensus

Probab=97.10  E-value=0.00081  Score=65.08  Aligned_cols=54  Identities=28%  Similarity=0.337  Sum_probs=50.2

Q ss_pred             EEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEec
Q psy16898        165 LVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQK  220 (324)
Q Consensus       165 ~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~  220 (324)
                      .|||+|+|||.+++.+++.|+ .|+|+|.-..|...|++-...|+  .+++|.+++.
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng--~SdkI~vInk  123 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNG--MSDKINVINK  123 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCC--Cccceeeecc
Confidence            589999999999999999988 99999999999999999999999  8888887764

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=97.08  E-value=0.0009  Score=63.35  Aligned_cols=69  Identities=17%  Similarity=0.288  Sum_probs=52.5

Q ss_pred             EEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCC
Q psy16898        166 VLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNS  244 (324)
Q Consensus       166 VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~  244 (324)
                      |+|||||.|++++-+.+.|. -|.++|+++.|.+..+.|..        . .++++|+.++.....              
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~--------~-~~~~~Di~~~~~~~~--------------   57 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG--------N-KVPFGDITKISPSDI--------------   57 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC--------C-CCCccChhhhhhhhC--------------
Confidence            68999999999999988888 46789999999998887642        1 345678887643211              


Q ss_pred             CCCCcccEEEECChhh
Q psy16898        245 TGGTAVARVIMNLPAT  260 (324)
Q Consensus       245 ~~~~~fD~Vi~npP~~  260 (324)
                         ..+|+++.-||..
T Consensus        58 ---~~~dvl~gg~PCq   70 (315)
T TIGR00675        58 ---PDFDILLGGFPCQ   70 (315)
T ss_pred             ---CCcCEEEecCCCc
Confidence               2378898888863

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.03  E-value=0.0028  Score=57.03  Aligned_cols=89  Identities=21%  Similarity=0.316  Sum_probs=62.0

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCe-EEEeccHHHHHHHHHHHhhhhhc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPI-SATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v-~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .+|.++||+|+-||+|+..+.++|| +|+|+|.....+.+--   + +.    .++ .+-..|++.+-.+...       
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL---R-~d----~rV~~~E~tN~r~l~~~~~~-------  142 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL---R-ND----PRVIVLERTNVRYLTPEDFT-------  142 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH---h-cC----CcEEEEecCChhhCCHHHcc-------
Confidence            3899999999999999999999988 9999999887666532   1 12    134 3444566655444321       


Q ss_pred             ccCCCCCCCCcccEEEECChhhhH-HHHHHHhc-cch
Q psy16898        239 QSEGNSTGGTAVARVIMNLPATAV-EYVRYLKV-LTR  273 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~a~-~~l~~~~~-l~~  273 (324)
                               ...|.+++|.-..+. ..++.+.. +++
T Consensus       143 ---------~~~d~~v~DvSFISL~~iLp~l~~l~~~  170 (245)
T COG1189         143 ---------EKPDLIVIDVSFISLKLILPALLLLLKD  170 (245)
T ss_pred             ---------cCCCeEEEEeehhhHHHHHHHHHHhcCC
Confidence                     248999999876543 35666665 444

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.00  E-value=0.0028  Score=56.01  Aligned_cols=132  Identities=14%  Similarity=0.128  Sum_probs=82.7

Q ss_pred             hccCCCE-EEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        159 EVREGDL-VLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       159 ~~~~g~~-VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      .+.+... ||+++||||..+.++|+.  ...-.--|.++......+..+...+  +++-...+..|+.+-.-....    
T Consensus        21 ~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~--~~Nv~~P~~lDv~~~~w~~~~----   94 (204)
T PF06080_consen   21 YLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAG--LPNVRPPLALDVSAPPWPWEL----   94 (204)
T ss_pred             HhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcC--CcccCCCeEeecCCCCCcccc----
Confidence            3555554 999999999999999984  4577788999999888888777766  653233455565432111000    


Q ss_pred             hhcccCCCCCCCCcccEEEE-CC-----hhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEE-------cccCCChhHHhH
Q psy16898        236 RWSQSEGNSTGGTAVARVIM-NL-----PATAVEYVRYLKV-LTREEFGKLSRPPVLYLYC-------FLPKMDLETKKK  301 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~-np-----P~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~-------f~~~~~~~~~~~  301 (324)
                          .  .......||.|++ |.     ...+..++..+.. |++        +|.+.+|.       |+..++..++..
T Consensus        95 ----~--~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~--------gG~L~~YGPF~~~G~~ts~SN~~FD~s  160 (204)
T PF06080_consen   95 ----P--APLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKP--------GGLLFLYGPFNRDGKFTSESNAAFDAS  160 (204)
T ss_pred             ----c--cccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCC--------CCEEEEeCCcccCCEeCCcHHHHHHHH
Confidence                0  0001245998866 43     2223334444433 544        58999883       344566778888


Q ss_pred             hhhcCCCce
Q psy16898        302 IKSYDPSYA  310 (324)
Q Consensus       302 v~~y~~~~~  310 (324)
                      .+.-+|++.
T Consensus       161 Lr~rdp~~G  169 (204)
T PF06080_consen  161 LRSRDPEWG  169 (204)
T ss_pred             HhcCCCCcC
Confidence            888888765

The function of this family is unknown.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.99  E-value=0.0027  Score=59.73  Aligned_cols=106  Identities=11%  Similarity=0.115  Sum_probs=71.8

Q ss_pred             cChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        148 RLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       148 r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      -+..|....+. ..++..++|.--|.|+.+..++++  +++|+|+|.++.|++.|++++...    .+++.+++++..++
T Consensus         7 Vll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~----~~r~~~~~~~F~~l   81 (310)
T PF01795_consen    7 VLLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF----DDRFIFIHGNFSNL   81 (310)
T ss_dssp             TTHHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC----CTTEEEEES-GGGH
T ss_pred             ccHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc----cceEEEEeccHHHH
Confidence            34444433333 457889999999999999999974  579999999999999998877633    35899999998877


Q ss_pred             HHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc
Q psy16898        226 LQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV  270 (324)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~  270 (324)
                      ........            ....+|.|++|+=-++.++-+.-++
T Consensus        82 ~~~l~~~~------------~~~~~dgiL~DLGvSS~Qld~~~RG  114 (310)
T PF01795_consen   82 DEYLKELN------------GINKVDGILFDLGVSSMQLDDPERG  114 (310)
T ss_dssp             HHHHHHTT------------TTS-EEEEEEE-S--HHHHHTGGGS
T ss_pred             HHHHHHcc------------CCCccCEEEEccccCHHHhCCCCCC
Confidence            65543320            1245999999998877777777777

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.99  E-value=0.012  Score=55.74  Aligned_cols=105  Identities=11%  Similarity=0.071  Sum_probs=70.1

Q ss_pred             HHhhccCCCEEEEEcCCCchhHHHHHh------cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCC-CeEEEeccHHHHHHH
Q psy16898        156 VTKEVREGDLVLDVFAGVGPFSIPAAR------RGAIVAANDLNPDSYAWLQASIRLNERQVKT-PISATQKDARDFLQT  228 (324)
Q Consensus       156 ~~~~~~~g~~VLDl~~G~G~~al~~a~------~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~-~v~~~~~D~~~~~~~  228 (324)
                      +++.+.++..++|+|||.|.-+..+.+      +....+++|+|.++++.+..++....  ++. .+.-+++|..+.+..
T Consensus        70 Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~--~p~l~v~~l~gdy~~~l~~  147 (319)
T TIGR03439        70 IAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN--FSHVRCAGLLGTYDDGLAW  147 (319)
T ss_pred             HHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc--CCCeEEEEEEecHHHHHhh
Confidence            555677888999999999998655443      24589999999999999999998433  441 245589998776543


Q ss_pred             HHHHhhhhhcccCCCCCCCCcccEEEE------C-ChhhhHHHHHHHhc--cchh
Q psy16898        229 DARAHLVRWSQSEGNSTGGTAVARVIM------N-LPATAVEYVRYLKV--LTRE  274 (324)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~fD~Vi~------n-pP~~a~~~l~~~~~--l~~~  274 (324)
                      .....            .......++.      | .|..+..||..++.  +.++
T Consensus       148 l~~~~------------~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~  190 (319)
T TIGR03439       148 LKRPE------------NRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPS  190 (319)
T ss_pred             ccccc------------ccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCC
Confidence            21100            0112333332      4 46668889998865  5554

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK00536 speE spermidine synthase; Provisional

Probab=96.90  E-value=0.011  Score=54.58  Aligned_cols=102  Identities=12%  Similarity=-0.063  Sum_probs=69.5

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCC-CCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVK-TPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +..++||=+|.|-|+.+.+++|...+|+.||+++..++.+++-+-.....++ .+++++.     +..+..         
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-----~~~~~~---------  136 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-----QLLDLD---------  136 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-----hhhhcc---------
Confidence            4568999999999999999999756999999999999999983322110032 3777775     111110         


Q ss_pred             cCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                             ...||+||+|... ..+|.+.++. |+++        |++.+-+=++
T Consensus       137 -------~~~fDVIIvDs~~-~~~fy~~~~~~L~~~--------Gi~v~Qs~sp  174 (262)
T PRK00536        137 -------IKKYDLIICLQEP-DIHKIDGLKRMLKED--------GVFISVAKHP  174 (262)
T ss_pred             -------CCcCCEEEEcCCC-ChHHHHHHHHhcCCC--------cEEEECCCCc
Confidence                   1359999999432 2567766665 7765        6665544333

>KOG1975|consensus

Probab=96.86  E-value=0.0028  Score=59.34  Aligned_cols=66  Identities=18%  Similarity=0.050  Sum_probs=53.3

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCC----CeEEEeccHHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKT----PISATQKDARDFL  226 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~----~v~~~~~D~~~~~  226 (324)
                      .++++.++|||||-|+=.+-.-+.|. .++|+||.+-+++.|++..+.-.. ...    .+.|+++|.....
T Consensus       115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~-r~~~~~f~a~f~~~Dc~~~~  185 (389)
T KOG1975|consen  115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKN-RFKKFIFTAVFIAADCFKER  185 (389)
T ss_pred             hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHh-hhhcccceeEEEEeccchhH
Confidence            46889999999999999998888777 999999999999999987764321 111    3789999987653

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=96.79  E-value=0.0026  Score=60.60  Aligned_cols=75  Identities=27%  Similarity=0.348  Sum_probs=57.8

Q ss_pred             CEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCC
Q psy16898        164 DLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEG  242 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~  242 (324)
                      -+++|||||.|++.+-+...|. -+.++|+++.|++..+.|...        -.+...|+.++..+....          
T Consensus         4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~--------~~~~~~di~~~~~~~~~~----------   65 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH--------GDIILGDIKELDGEALRK----------   65 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC--------CceeechHhhcChhhccc----------
Confidence            4799999999999999999887 788999999999988766542        345667877765543221          


Q ss_pred             CCCCCCcccEEEECChhhh
Q psy16898        243 NSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       243 ~~~~~~~fD~Vi~npP~~a  261 (324)
                           ..+|+++.-||.-+
T Consensus        66 -----~~~DvligGpPCQ~   79 (328)
T COG0270          66 -----SDVDVLIGGPPCQD   79 (328)
T ss_pred             -----cCCCEEEeCCCCcc
Confidence                 14899999999843

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.75  E-value=0.0028  Score=56.10  Aligned_cols=62  Identities=21%  Similarity=0.195  Sum_probs=41.0

Q ss_pred             cCcChHHHH-HHHhhcc--CCCEEEEEcCCCchhHHHHHh--cC--CEEEEEeCCHHHHHHHHHHHHHh
Q psy16898        146 NSRLSTEHE-RVTKEVR--EGDLVLDVFAGVGPFSIPAAR--RG--AIVAANDLNPDSYAWLQASIRLN  207 (324)
Q Consensus       146 ~~r~~~e~~-~~~~~~~--~g~~VLDl~~G~G~~al~~a~--~g--~~V~avD~~~~a~~~a~~N~~~n  207 (324)
                      --|+..|-. |.+..+.  ..-++.|.|||.|++.--++-  +.  ..|+|-|+++++++.|++|+.+-
T Consensus        32 PVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL  100 (246)
T PF11599_consen   32 PVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL  100 (246)
T ss_dssp             -HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred             cHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence            335555543 2333332  233899999999998655543  32  38999999999999999999753

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PRK10458 DNA cytosine methylase; Provisional

Probab=96.75  E-value=0.0021  Score=63.99  Aligned_cols=58  Identities=21%  Similarity=0.249  Sum_probs=45.2

Q ss_pred             CCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        163 GDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .-+++|||||.|++++.+-..|. -|.++|+++.|.+..+.|....    + ....+++|+.++
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~----p-~~~~~~~DI~~i  146 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD----P-ATHRFNEDIRDI  146 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC----C-ccceeccChhhC
Confidence            34899999999999999988887 7789999999999888875311    1 244566777765

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=96.67  E-value=0.0074  Score=51.29  Aligned_cols=81  Identities=15%  Similarity=0.099  Sum_probs=53.6

Q ss_pred             EEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEEC-----ChhhhH
Q psy16898        188 AANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMN-----LPATAV  262 (324)
Q Consensus       188 ~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~n-----pP~~a~  262 (324)
                      +|+|+|+.|++.|+++.+..+.....+++++.+|+.++...                  ...||.|++.     .|+ ..
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~------------------~~~fD~v~~~~~l~~~~d-~~   61 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFD------------------DCEFDAVTMGYGLRNVVD-RL   61 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCC------------------CCCeeEEEecchhhcCCC-HH
Confidence            48999999999998776532200123799999999875322                  2359999885     232 22


Q ss_pred             HHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCC
Q psy16898        263 EYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMD  295 (324)
Q Consensus       263 ~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~  295 (324)
                      .++..+.. |++        ||.+.+..|.+...
T Consensus        62 ~~l~ei~rvLkp--------GG~l~i~d~~~~~~   87 (160)
T PLN02232         62 RAMKEMYRVLKP--------GSRVSILDFNKSNQ   87 (160)
T ss_pred             HHHHHHHHHcCc--------CeEEEEEECCCCCh
Confidence            34444443 555        59999988887543

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=96.61  E-value=0.012  Score=53.69  Aligned_cols=83  Identities=20%  Similarity=0.176  Sum_probs=58.7

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      ...++||+|+|-|..+..++..-.+|+|-|.|+.|...+++    -|      .+++  |+.++...             
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~----kg------~~vl--~~~~w~~~-------------  148 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK----KG------FTVL--DIDDWQQT-------------  148 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh----CC------CeEE--ehhhhhcc-------------
Confidence            45689999999999999999877799999999998666543    33      3333  33333211             


Q ss_pred             CCCCCCCcccEEEE-CC---hhhhHHHHHHHhc-cchh
Q psy16898        242 GNSTGGTAVARVIM-NL---PATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~-np---P~~a~~~l~~~~~-l~~~  274 (324)
                           +.+||+|.+ |+   .+.+..+|..++. +++.
T Consensus       149 -----~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~  181 (265)
T PF05219_consen  149 -----DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPN  181 (265)
T ss_pred             -----CCceEEEeehhhhhccCCHHHHHHHHHHHhCCC
Confidence                 235999965 44   3346678888877 7775

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=96.58  E-value=0.0088  Score=53.30  Aligned_cols=101  Identities=13%  Similarity=0.031  Sum_probs=66.7

Q ss_pred             CCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        163 GDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      ..+.||+|||+|.++-.+..+-+ +|-.||.++..++.|++.+...+   ....++++.-..+|.+..            
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~---~~v~~~~~~gLQ~f~P~~------------  120 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN---PRVGEFYCVGLQDFTPEE------------  120 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG---CCEEEEEES-GGG----T------------
T ss_pred             cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC---CCcceEEecCHhhccCCC------------
Confidence            45899999999999987766545 99999999999999998765422   124678888888886541            


Q ss_pred             CCCCCCCcccEEEEC-----Chhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        242 GNSTGGTAVARVIMN-----LPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~n-----pP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                            .+||+|-+-     +.+. -++||...+. |+++        |+|.+-.-..
T Consensus       121 ------~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~--------G~IvvKEN~~  164 (218)
T PF05891_consen  121 ------GKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPN--------GVIVVKENVS  164 (218)
T ss_dssp             ------T-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEE--------EEEEEEEEEE
T ss_pred             ------CcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCC--------cEEEEEecCC
Confidence                  359999874     4442 3467777766 7775        7777664433

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG4058|consensus

Probab=96.44  E-value=0.013  Score=48.98  Aligned_cols=68  Identities=22%  Similarity=0.207  Sum_probs=56.0

Q ss_pred             HHhhcc--CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        156 VTKEVR--EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       156 ~~~~~~--~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +++.+.  +..+.+|+|+|-|.+-+.+++.|. ..+|+|+||..+.+++-.+-+.+  +.....|...|...+
T Consensus        64 VLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g--~~k~trf~RkdlwK~  134 (199)
T KOG4058|consen   64 VLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAG--CAKSTRFRRKDLWKV  134 (199)
T ss_pred             HHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHh--cccchhhhhhhhhhc
Confidence            444443  445899999999999999999986 89999999999999999988888  776777777776654

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.42  E-value=0.025  Score=52.73  Aligned_cols=85  Identities=11%  Similarity=0.145  Sum_probs=66.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.++...+|.--|-|+.|-.+..+.   ++++|+|.+|.|++.|++.+..++    ++++++++...++........   
T Consensus        21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~----~r~~~v~~~F~~l~~~l~~~~---   93 (314)
T COG0275          21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD----GRVTLVHGNFANLAEALKELG---   93 (314)
T ss_pred             cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC----CcEEEEeCcHHHHHHHHHhcC---
Confidence            4577899999999999999999853   589999999999999999998765    589999999887765543211   


Q ss_pred             hcccCCCCCCCCcccEEEECChhhh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                                ...+|-|++|+=-++
T Consensus        94 ----------i~~vDGiL~DLGVSS  108 (314)
T COG0275          94 ----------IGKVDGILLDLGVSS  108 (314)
T ss_pred             ----------CCceeEEEEeccCCc
Confidence                      234788887754433

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=96.41  E-value=0.016  Score=53.34  Aligned_cols=86  Identities=21%  Similarity=0.208  Sum_probs=68.0

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .|+.|+-+| ---.+|+++|-.|  .+|.-+|+++..++...+-++.-+  +. |++.+.-|.++-+++...        
T Consensus       152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g--~~-~ie~~~~Dlr~plpe~~~--------  219 (354)
T COG1568         152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG--YN-NIEAFVFDLRNPLPEDLK--------  219 (354)
T ss_pred             CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC--cc-chhheeehhcccChHHHH--------
Confidence            467788888 6667778877754  499999999999999999999888  76 799999999987776554        


Q ss_pred             cCCCCCCCCcccEEEECChhhhHHHHHHH
Q psy16898        240 SEGNSTGGTAVARVIMNLPATAVEYVRYL  268 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~  268 (324)
                              .+||+++.|||.. ..-+.+|
T Consensus       220 --------~kFDvfiTDPpeT-i~alk~F  239 (354)
T COG1568         220 --------RKFDVFITDPPET-IKALKLF  239 (354)
T ss_pred             --------hhCCeeecCchhh-HHHHHHH
Confidence                    3599999999993 3334444

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=96.33  E-value=0.019  Score=53.29  Aligned_cols=61  Identities=23%  Similarity=0.190  Sum_probs=53.8

Q ss_pred             CCEEEEEcCCCchhHHHHHhc--C--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        163 GDLVLDVFAGVGPFSIPAARR--G--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~~--g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .-+|||+.||.|..-+-+...  .  ..|.-.|.|+..++..++-++.+|  +.+-++|.++||++.
T Consensus       136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g--L~~i~~f~~~dAfd~  200 (311)
T PF12147_consen  136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG--LEDIARFEQGDAFDR  200 (311)
T ss_pred             ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC--CccceEEEecCCCCH
Confidence            348999999999998888763  2  489999999999999999999999  986669999999985

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=96.32  E-value=0.038  Score=46.02  Aligned_cols=85  Identities=11%  Similarity=0.103  Sum_probs=54.9

Q ss_pred             EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECC---hhh--
Q psy16898        186 IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNL---PAT--  260 (324)
Q Consensus       186 ~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~np---P~~--  260 (324)
                      +|+|+|+.++|++..++.++.++  +.+++++++..-..+......                ..+|.++.|+   |.+  
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~--~~~~v~li~~sHe~l~~~i~~----------------~~v~~~iFNLGYLPggDk   62 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAG--LEDRVTLILDSHENLDEYIPE----------------GPVDAAIFNLGYLPGGDK   62 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT---GSGEEEEES-GGGGGGT--S------------------EEEEEEEESB-CTS-T
T ss_pred             CEEEEECHHHHHHHHHHHHHhcC--CCCcEEEEECCHHHHHhhCcc----------------CCcCEEEEECCcCCCCCC
Confidence            69999999999999999999998  877899998876654332210                2489999993   543  


Q ss_pred             --------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCCh
Q psy16898        261 --------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDL  296 (324)
Q Consensus       261 --------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~  296 (324)
                              .+..++++.. |+++        |++-+-++...+..
T Consensus        63 ~i~T~~~TTl~Al~~al~lL~~g--------G~i~iv~Y~GH~gG   99 (140)
T PF06962_consen   63 SITTKPETTLKALEAALELLKPG--------GIITIVVYPGHPGG   99 (140)
T ss_dssp             TSB--HHHHHHHHHHHHHHEEEE--------EEEEEEE--STCHH
T ss_pred             CCCcCcHHHHHHHHHHHHhhccC--------CEEEEEEeCCCCCC
Confidence                    2344444444 5554        88777777665543

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG4589|consensus

Probab=95.80  E-value=0.077  Score=46.24  Aligned_cols=119  Identities=19%  Similarity=0.136  Sum_probs=73.3

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEec-cHHHHHHHH-HHHhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQK-DARDFLQTD-ARAHL  234 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~-D~~~~~~~~-~~~~~  234 (324)
                      +.++++|||+||..|.++.-+.++   ...|.|||+-+-           ..  +. .+.++++ |+.+-.... ..+.+
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p--~~-Ga~~i~~~dvtdp~~~~ki~e~l  132 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EP--PE-GATIIQGNDVTDPETYRKIFEAL  132 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cC--CC-CcccccccccCCHHHHHHHHHhC
Confidence            568999999999999999998885   348999998651           11  22 4666666 665532211 11111


Q ss_pred             hhhcccCCCCCCCCcccEEEECChhhh--HHHHHHHhc--cch----hhcCCCCCCCEEEEEEcccCCChhHHhHhh
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNLPATA--VEYVRYLKV--LTR----EEFGKLSRPPVLYLYCFLPKMDLETKKKIK  303 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~npP~~a--~~~l~~~~~--l~~----~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~  303 (324)
                                 +....|+|++|.-..+  ...++..+-  |=.    -.+....++|.+.|-.....++..++....
T Consensus       133 -----------p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~  198 (232)
T KOG4589|consen  133 -----------PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQ  198 (232)
T ss_pred             -----------CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHH
Confidence                       1356999999964322  112222211  000    001223477999999999998887776653

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=95.56  E-value=0.024  Score=57.17  Aligned_cols=82  Identities=15%  Similarity=0.219  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCCCchhHHHHHh---cC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCC-CeEEEeccHHHHHHHHHHHhh
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR---RG---AIVAANDLNPDSYAWLQASIRLNERQVKT-PISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~---~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~-~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      ++..+.|++||+|.+-+...+   .|   ..+++.|.++.++..++.|+..++  +.+ ......+|...-....     
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~--~~~~t~~~~~~dtl~~~d~~-----  289 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHN--IDYANFNIINADTLTTKEWE-----  289 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcC--CCccccCcccCCcCCCcccc-----
Confidence            567899999999999887654   12   269999999999999999998877  532 2233334432110000     


Q ss_pred             hhhcccCCCCCCCCcccEEEECChhhh
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                                 ....||.|++|||...
T Consensus       290 -----------~~~~~D~v~~NpPf~~  305 (501)
T TIGR00497       290 -----------NENGFEVVVSNPPYSI  305 (501)
T ss_pred             -----------ccccCCEEeecCCccc
Confidence                       0134999999999853

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=95.49  E-value=0.047  Score=50.62  Aligned_cols=91  Identities=16%  Similarity=0.121  Sum_probs=53.2

Q ss_pred             CEEEEEcCCCchhHHHH-Hhc---CCEEEEEeCCHHHHHHHHHHHH-HhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        164 DLVLDVFAGVGPFSIPA-ARR---GAIVAANDLNPDSYAWLQASIR-LNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~-a~~---g~~V~avD~~~~a~~~a~~N~~-~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .+|+=+|||.=+++... ++.   ++.|+++|+++.|++.+++=++ ..+  +..+++|+++|+.+...+.         
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~~~m~f~~~d~~~~~~dl---------  190 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LSKRMSFITADVLDVTYDL---------  190 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H-SSEEEEES-GGGG-GG----------
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--ccCCeEEEecchhcccccc---------
Confidence            59999999988887544 442   4689999999999999988766 445  6668999999998765442         


Q ss_pred             ccCCCCCCCCcccEEEECChhh-----hHHHHHHHhc-cchh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPAT-----AVEYVRYLKV-LTRE  274 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~-----a~~~l~~~~~-l~~~  274 (324)
                               ..||+|++----.     -.+.+..+.. ++++
T Consensus       191 ---------~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~g  223 (276)
T PF03059_consen  191 ---------KEYDVVFLAALVGMDAEPKEEILEHLAKHMAPG  223 (276)
T ss_dssp             ------------SEEEE-TT-S----SHHHHHHHHHHHS-TT
T ss_pred             ---------ccCCEEEEhhhcccccchHHHHHHHHHhhCCCC
Confidence                     2399997753222     2346666655 5554

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.48  E-value=0.014  Score=52.33  Aligned_cols=83  Identities=14%  Similarity=0.122  Sum_probs=56.4

Q ss_pred             CCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHh-CCCCCCCeEEEeccHHHHH-HHHHHHhhhhh
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLN-ERQVKTPISATQKDARDFL-QTDARAHLVRW  237 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n-~~~l~~~v~~~~~D~~~~~-~~~~~~~~~~~  237 (324)
                      ++-+.||+|.|.-.+==.+..  .|.+.+|-|+++.+++.|+.++..| +  +...+++....-.+.+ .....      
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~--l~~~I~lr~qk~~~~if~giig------  149 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPG--LERAIRLRRQKDSDAIFNGIIG------  149 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcc--hhhheeEEeccCcccccccccc------
Confidence            556889998775544222222  4779999999999999999999999 5  7655666544322221 11110      


Q ss_pred             cccCCCCCCCCcccEEEECChhh
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                              ..++||..++|||..
T Consensus       150 --------~nE~yd~tlCNPPFh  164 (292)
T COG3129         150 --------KNERYDATLCNPPFH  164 (292)
T ss_pred             --------ccceeeeEecCCCcc
Confidence                    136799999999984

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=95.37  E-value=0.021  Score=51.97  Aligned_cols=47  Identities=23%  Similarity=0.386  Sum_probs=34.1

Q ss_pred             HHHhhcc--CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHH
Q psy16898        155 RVTKEVR--EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQ  201 (324)
Q Consensus       155 ~~~~~~~--~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~  201 (324)
                      .+.+.++  +..+++|+|||+|.+++.+...+..|+.+|+++..+...+
T Consensus        11 ~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~   59 (260)
T PF02086_consen   11 WIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWK   59 (260)
T ss_dssp             HHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHH
Confidence            3555666  5889999999999999999888889999999998877665

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=95.14  E-value=0.061  Score=48.96  Aligned_cols=61  Identities=26%  Similarity=0.373  Sum_probs=44.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      +....+|+|+|||.=+++++....  ++.++|.|++..+++.+..=+..-+  ..  .++...|...
T Consensus       103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~--~~--~~~~v~Dl~~  165 (251)
T PF07091_consen  103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG--VP--HDARVRDLLS  165 (251)
T ss_dssp             S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---C--EEEEEE-TTT
T ss_pred             CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC--CC--cceeEeeeec
Confidence            445789999999999999988763  5699999999999999998887776  54  5555556543

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=95.08  E-value=0.068  Score=49.55  Aligned_cols=49  Identities=29%  Similarity=0.371  Sum_probs=44.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhC
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNE  208 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~  208 (324)
                      -.+|+.|||.|+|+|+.++.+.+.|...+++|+++..++.+.+.+....
T Consensus       220 s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~~  268 (302)
T COG0863         220 SFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEGL  268 (302)
T ss_pred             CCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhhc
Confidence            4589999999999999999999999999999999999999998887654

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=94.84  E-value=0.038  Score=51.62  Aligned_cols=40  Identities=18%  Similarity=0.158  Sum_probs=32.1

Q ss_pred             CEEEEEcCCCc----hhHHHHHhc------CCEEEEEeCCHHHHHHHHHH
Q psy16898        164 DLVLDVFAGVG----PFSIPAARR------GAIVAANDLNPDSYAWLQAS  203 (324)
Q Consensus       164 ~~VLDl~~G~G----~~al~~a~~------g~~V~avD~~~~a~~~a~~N  203 (324)
                      -+|+..||.||    ++|+.+...      ..+|+|.|+|+.+++.|++-
T Consensus       117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G  166 (287)
T PRK10611        117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG  166 (287)
T ss_pred             EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence            49999999999    455555542      24899999999999999875

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.76  E-value=0.34  Score=46.28  Aligned_cols=44  Identities=27%  Similarity=0.321  Sum_probs=36.8

Q ss_pred             hccCCCEEEEEcCC-CchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAG-VGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G-~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      .+.+|++|+=.|+| .|.+++.+|+ .|++|+++|.|++-.+.|++
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~  208 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK  208 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH
Confidence            36689998888776 6677888888 78999999999999988865

>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]

Probab=94.45  E-value=0.032  Score=57.83  Aligned_cols=50  Identities=38%  Similarity=0.543  Sum_probs=44.4

Q ss_pred             hhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh
Q psy16898        158 KEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLN  207 (324)
Q Consensus       158 ~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n  207 (324)
                      +....+..++|.|+|-|++.+.+++.|+.|+|+|+||.|+-.+|+-+..-
T Consensus        86 ~~~~~~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnPvAylfLKavlEyP  135 (875)
T COG1743          86 ETPFEGPKLLDPFAGGGSIPLEALRLGLEVVAVELNPVAYLFLKAVLEYP  135 (875)
T ss_pred             cCcccCCcccccccCCCccchHHHhcCceeEEEecccHHHHHHHHHHhcc
Confidence            33446779999999999999999999999999999999999999887654

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=93.84  E-value=0.11  Score=48.19  Aligned_cols=44  Identities=20%  Similarity=0.178  Sum_probs=34.5

Q ss_pred             CCCEEEEEcCCCchhHHHHHh--cC-CEEEEEeCCHHHHHHHHHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR--RG-AIVAANDLNPDSYAWLQASIR  205 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~--~g-~~V~avD~~~~a~~~a~~N~~  205 (324)
                      ...+|||+|||+|+-...+..  +. .+++++|.|+.|++.++.=+.
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~   79 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR   79 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh
Confidence            346899999999986665554  33 389999999999998877544

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG1596|consensus

Probab=93.79  E-value=0.25  Score=44.75  Aligned_cols=80  Identities=21%  Similarity=0.164  Sum_probs=56.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-C--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-G--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +++|.+||=||++.|+---+.+.- |  .-|+|||.|+.+=..+..-++  +   ..|+-.+..||+.--+.-.   +  
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk--k---RtNiiPIiEDArhP~KYRm---l--  223 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK--K---RTNIIPIIEDARHPAKYRM---L--  223 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh--c---cCCceeeeccCCCchheee---e--
Confidence            679999999999999998888872 2  379999999987666543332  1   2378888889875322110   0  


Q ss_pred             hcccCCCCCCCCcccEEEECChh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPA  259 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~  259 (324)
                                -...|+|+.|.|.
T Consensus       224 ----------VgmVDvIFaDvaq  236 (317)
T KOG1596|consen  224 ----------VGMVDVIFADVAQ  236 (317)
T ss_pred             ----------eeeEEEEeccCCC
Confidence                      1248999998654

>KOG1269|consensus

Probab=93.41  E-value=0.083  Score=51.00  Aligned_cols=107  Identities=20%  Similarity=0.127  Sum_probs=70.2

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      ...++..++|++||.|..+..++. +++.+++++.|+.-+..+..-.....  ++++..++.+|...-+.+.        
T Consensus       107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~--l~~k~~~~~~~~~~~~fed--------  176 (364)
T KOG1269|consen  107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAY--LDNKCNFVVADFGKMPFED--------  176 (364)
T ss_pred             cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHH--hhhhcceehhhhhcCCCCc--------
Confidence            456788999999999999999998 56799999999987777665554444  5544444555554432221        


Q ss_pred             cccCCCCCCCCcccEE-----EECChhhhHHHHHHHhccchhhcCCCCCCCEEEEEEcccC
Q psy16898        238 SQSEGNSTGGTAVARV-----IMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~V-----i~npP~~a~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                                ..||.+     +.-.|....-+-+.++.+++        ||.+-+|.+.+.
T Consensus       177 ----------n~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kp--------GG~~i~~e~i~~  219 (364)
T KOG1269|consen  177 ----------NTFDGVRFLEVVCHAPDLEKVYAEIYRVLKP--------GGLFIVKEWIKT  219 (364)
T ss_pred             ----------cccCcEEEEeecccCCcHHHHHHHHhcccCC--------CceEEeHHHHHh
Confidence                      236655     23355544445555554555        477777777664

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=93.26  E-value=0.26  Score=38.61  Aligned_cols=55  Identities=33%  Similarity=0.389  Sum_probs=38.3

Q ss_pred             EEEEcCCCchhHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        166 VLDVFAGVGPFSIPAAR---RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       166 VLDl~~G~G~~al~~a~---~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      ++|++||+|... .++.   .+..++++|.++.++..++.......  .. .+.+..+|...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~  109 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAG--LG-LVDFVVADALG  109 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcC--CC-ceEEEEecccc
Confidence            999999999976 3333   23589999999999998655544322  21 15777777665

>KOG1709|consensus

Probab=93.06  E-value=1.4  Score=39.54  Aligned_cols=94  Identities=14%  Similarity=0.054  Sum_probs=70.0

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRG-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .+|.+||.+|-|.|.+.-.+-.+. .+=+-+|.+|+.++.++++.=...    +||.++.+--.+.+..+..        
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek----~nViil~g~WeDvl~~L~d--------  167 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK----ENVIILEGRWEDVLNTLPD--------  167 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc----cceEEEecchHhhhccccc--------
Confidence            589999999999999988776643 366679999999999988775544    5899999988887776543        


Q ss_pred             cCCCCCCCCcccEEEECCh--hh--hHHHHHHHhc-cchh
Q psy16898        240 SEGNSTGGTAVARVIMNLP--AT--AVEYVRYLKV-LTRE  274 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP--~~--a~~~l~~~~~-l~~~  274 (324)
                              ..||-|.-|-=  ..  ..+|-+.+.+ |||+
T Consensus       168 --------~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~  199 (271)
T KOG1709|consen  168 --------KHFDGIYYDTYSELYEDLRHFHQHVVRLLKPE  199 (271)
T ss_pred             --------cCcceeEeechhhHHHHHHHHHHHHhhhcCCC
Confidence                    35999999853  21  2345565555 5654

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=92.92  E-value=0.21  Score=41.52  Aligned_cols=50  Identities=24%  Similarity=0.337  Sum_probs=32.6

Q ss_pred             EEcCCCc--hhHHHHH--h--cCCEEEEEeCCHHHHHHHHHH--HHHhCCCCCCCeEEEe
Q psy16898        168 DVFAGVG--PFSIPAA--R--RGAIVAANDLNPDSYAWLQAS--IRLNERQVKTPISATQ  219 (324)
Q Consensus       168 Dl~~G~G--~~al~~a--~--~g~~V~avD~~~~a~~~a~~N--~~~n~~~l~~~v~~~~  219 (324)
                      |+||+.|  .....++  .  .+.+|+++|.+|..++.+++|  +..|.  ..+.++++.
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~--~~~~~~~~~   58 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALND--KDGEVEFHP   58 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTT--TSTTGGEEE
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcC--CCceEEEEE
Confidence            8999999  6655553  2  356999999999999999999  88875  333344443

; PDB: 2PY6_A.

>KOG2352|consensus

Probab=92.91  E-value=0.24  Score=49.02  Aligned_cols=127  Identities=16%  Similarity=0.134  Sum_probs=82.6

Q ss_pred             CCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .+..+|-+|=|.|.+...+..  ....++|||+.|.+++.|..+...-.  - .+..+.-.|+.+++.+..+.       
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q--~-~r~~V~i~dGl~~~~~~~k~-------  364 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ--S-DRNKVHIADGLDFLQRTAKS-------  364 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh--h-hhhhhhHhhchHHHHHHhhc-------
Confidence            355677777777888766654  34699999999999999999886544  1 14566677888888776541       


Q ss_pred             cCCCCCCCCcccEEEEC------------Chhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC--CChhHHhHhh
Q psy16898        240 SEGNSTGGTAVARVIMN------------LPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK--MDLETKKKIK  303 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~n------------pP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~--~~~~~~~~v~  303 (324)
                          .....+||+++.|            ||.+ +..++...+. +.+.        |++-+....+.  -.++...-++
T Consensus       365 ----~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~--------g~f~inlv~r~~~~~~~~~~~l~  432 (482)
T KOG2352|consen  365 ----QQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPR--------GMFIINLVTRNSSFKDEVLMNLA  432 (482)
T ss_pred             ----cccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCcc--------ceEEEEEecCCcchhHHHHHhhh
Confidence                1124679999886            2332 4456766666 5554        55555544444  3455555566


Q ss_pred             hcCCCce
Q psy16898        304 SYDPSYA  310 (324)
Q Consensus       304 ~y~~~~~  310 (324)
                      .+.|...
T Consensus       433 ~vf~~l~  439 (482)
T KOG2352|consen  433 KVFPQLY  439 (482)
T ss_pred             hhhHHHh
Confidence            6665544

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=92.65  E-value=0.2  Score=45.70  Aligned_cols=85  Identities=13%  Similarity=0.228  Sum_probs=50.9

Q ss_pred             HHhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        156 VTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       156 ~~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      +++.+.++.. +..|.|+=.++..+.+..-+.+.+|+.|...+.+++|+....     ++.+.+.|+.+.+......   
T Consensus        52 ~v~~~n~~~~-l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~~-----~v~v~~~DG~~~l~allPP---  122 (245)
T PF04378_consen   52 AVRALNPDGE-LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRDR-----RVRVHHRDGYEGLKALLPP---  122 (245)
T ss_dssp             HHHHHSSSSS---EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TTS------EEEE-S-HHHHHHHH-S----
T ss_pred             HHHHhccCCC-cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccCC-----ccEEEeCchhhhhhhhCCC---
Confidence            3344444333 788999988998888887799999999999999998887433     7999999999988775431   


Q ss_pred             hhcccCCCCCCCCcccEEEECChhh
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                 ..+--.|++|||+-
T Consensus       123 -----------~~rRglVLIDPpYE  136 (245)
T PF04378_consen  123 -----------PERRGLVLIDPPYE  136 (245)
T ss_dssp             -----------TTS-EEEEE-----
T ss_pred             -----------CCCCeEEEECCCCC
Confidence                       23467999999984

; PDB: 2OO3_A.

>KOG2940|consensus

Probab=92.02  E-value=0.14  Score=46.16  Aligned_cols=57  Identities=12%  Similarity=0.026  Sum_probs=44.4

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDAR  223 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~  223 (324)
                      ....++|+|||.|.++-++...|. +++-+|.|-.|++.++. ++.++  +.  +....+|-.
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~-~qdp~--i~--~~~~v~DEE  129 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD-AQDPS--IE--TSYFVGDEE  129 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc-cCCCc--eE--EEEEecchh
Confidence            456899999999999999998877 99999999999998764 22244  43  556666643

>KOG2912|consensus

Probab=92.01  E-value=0.16  Score=47.72  Aligned_cols=80  Identities=13%  Similarity=0.167  Sum_probs=56.0

Q ss_pred             EEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHH-HHHHHHhhhhhcccC
Q psy16898        167 LDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFL-QTDARAHLVRWSQSE  241 (324)
Q Consensus       167 LDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~-~~~~~~~~~~~~~~~  241 (324)
                      +|+|.|+-.  ++.+.    .+...+|.|++...+..|+.|+..|+  +.+.+.++.......+ .+...+         
T Consensus       107 iDIgtgasc--i~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~--lss~ikvV~~~~~ktll~d~~~~---------  173 (419)
T KOG2912|consen  107 IDIGTGASC--IYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNN--LSSLIKVVKVEPQKTLLMDALKE---------  173 (419)
T ss_pred             eeccCchhh--hHHhhhchhccceeeeeeccccccchhhccccccc--cccceeeEEecchhhcchhhhcc---------
Confidence            677666544  44433    35689999999999999999999999  8888888887654332 221111         


Q ss_pred             CCCCCCCcccEEEECChhhhH
Q psy16898        242 GNSTGGTAVARVIMNLPATAV  262 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~npP~~a~  262 (324)
                         .....||...+|||.+..
T Consensus       174 ---~~e~~ydFcMcNPPFfe~  191 (419)
T KOG2912|consen  174 ---ESEIIYDFCMCNPPFFEN  191 (419)
T ss_pred             ---CccceeeEEecCCchhhc
Confidence               012349999999998643

>KOG2078|consensus

Probab=91.99  E-value=0.025  Score=54.91  Aligned_cols=191  Identities=25%  Similarity=0.189  Sum_probs=117.5

Q ss_pred             cCCCChhHHHHHHhcccc--cCCceeEEEEeeccCCChHHHHHhccCCC-CCCceeEEECCEEEEEeCchhhhhHHHHHH
Q psy16898         12 FEDFGEFNVKVLENAKLT--AKDFTHAEVLLTYDNFSAEDILKAILPDN-VAMSSFTSVGHIVHCNLREELIEHKFIIGR   88 (324)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~y~~~~~~~~l~~~~p~~-~~~~~~d~~G~i~vi~~~~~~~~~~~~I~~   88 (324)
                      .=+.++-+.+...+.|--  ...+.-..+...|.+|..-+.|+..++-+ -.+++++.+|..+...++.+..+++++|++
T Consensus       246 ~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr~e~~~~~~~I~~  325 (495)
T KOG2078|consen  246 LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLRQEPLPYKRLIAD  325 (495)
T ss_pred             ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhhcCCchhhhHHHH
Confidence            334455555555443321  01122355788999999999999999888 567779999999999999888899999999


Q ss_pred             HHHhhC-CCceEEEEcCCCCCcccccceeeEEccCCCeEEEEEeCCeEEEEeccc-------------ee-ecC----cC
Q psy16898         89 VLLDKV-PSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSK-------------VY-WNS----RL  149 (324)
Q Consensus        89 ~l~~~~-~~i~~V~~k~~~~~~~~~~~~~~~l~G~~~~~~~~~e~g~~f~id~~~-------------~f-~~~----r~  149 (324)
                      ...+++ +.+.++.++++.+...+++...+++++.-+..+...+++..|+.+++.             .| |..    -.
T Consensus       326 ~v~~kl~k~~~t~~~~~d~~p~~~~~~~~~i~hvvmnLPa~avefL~~F~~~la~k~~~d~~~lplvhcy~F~k~~~~~~  405 (495)
T KOG2078|consen  326 EVLDKLMKKIGTVVNKIDRIPQPFRTMQLHIVHVVMNLPASAVEFLLRFSGDLARKGPIDKTPLPLVHCYCFSKLFCDVS  405 (495)
T ss_pred             HHhhhhhhhhcccccccccCCCcccccchhhhhhhccChHHHHHHHHHhHHHHhccCccccccceeEEEEEEeecccCCC
Confidence            988743 557788888877777676666666555432222222444444444333             01 111    00


Q ss_pred             hHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhC
Q psy16898        150 STEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNE  208 (324)
Q Consensus       150 ~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~  208 (324)
                      .+|- ++.+.+   ...++++.+.|  ++..+..-.+|...+...-+...+-.|...|+
T Consensus       406 s~e~-~V~ar~---~~~~kv~~e~~--~~~~~h~VR~VapnK~M~ca~~~lp~~~l~~~  458 (495)
T KOG2078|consen  406 STED-LVTARI---VAALKVFAEDG--ALVSLHLVRKVAPNKEMYCASFQLPANVLVNE  458 (495)
T ss_pred             chHH-HHHHHH---Hhhcceeeccc--cceeeeeeeccCCCcccchhhhhcHHHHhhhh
Confidence            1121 111111   12456667777  33333334478888888877777777777666

>KOG2651|consensus

Probab=91.85  E-value=0.42  Score=46.05  Aligned_cols=41  Identities=29%  Similarity=0.114  Sum_probs=34.4

Q ss_pred             CCCEEEEEcCCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      +-+.|+|+|+|.|.++..++- .|..|.|||.|..+.+.|++
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            456899999999999999887 46699999999887766643

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=91.47  E-value=2.9  Score=37.28  Aligned_cols=64  Identities=11%  Similarity=0.188  Sum_probs=46.3

Q ss_pred             CCEEEEEcCCCc----hhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccH-HHHHHH
Q psy16898        163 GDLVLDVFAGVG----PFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDA-RDFLQT  228 (324)
Q Consensus       163 g~~VLDl~~G~G----~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~-~~~~~~  228 (324)
                      -+.+++.+|+-|    +++|.+|.  -|.++++|-.++......++.+...+  +.+.++|+.++. .+.+..
T Consensus        42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~--~~~~vEfvvg~~~e~~~~~  112 (218)
T PF07279_consen   42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG--LSDVVEFVVGEAPEEVMPG  112 (218)
T ss_pred             ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc--ccccceEEecCCHHHHHhh
Confidence            357888876654    44555554  36799999999998888888887667  765679999985 455554

The function of this family is unknown.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=91.33  E-value=0.3  Score=43.38  Aligned_cols=99  Identities=16%  Similarity=0.131  Sum_probs=51.3

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .++-+|.|+|||-+.+|..+ ..+..|...|+...           |.     .  ++.+|+...+.+.           
T Consensus        71 ~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-----------n~-----~--Vtacdia~vPL~~-----------  120 (219)
T PF05148_consen   71 PKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-----------NP-----R--VTACDIANVPLED-----------  120 (219)
T ss_dssp             -TTS-EEEES-TT-HHHHH---S---EEEEESS-S-----------ST-----T--EEES-TTS-S--T-----------
T ss_pred             CCCEEEEECCCchHHHHHhc-ccCceEEEeeccCC-----------CC-----C--EEEecCccCcCCC-----------
Confidence            35679999999999999543 34568999998752           22     2  4567877665432           


Q ss_pred             CCCCCCCCcccEEEECChhhhH---HHHHHHhc-cchhhcCCCCCCCEEEEEEcccC--CChhHHhHhhh
Q psy16898        241 EGNSTGGTAVARVIMNLPATAV---EYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK--MDLETKKKIKS  304 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP~~a~---~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~--~~~~~~~~v~~  304 (324)
                             ...|++|.-+--.+.   +|+..+.. |+++        |.+.+..-...  ....+.+.+++
T Consensus       121 -------~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~--------G~L~IAEV~SRf~~~~~F~~~~~~  175 (219)
T PF05148_consen  121 -------ESVDVAVFCLSLMGTNWPDFIREANRVLKPG--------GILKIAEVKSRFENVKQFIKALKK  175 (219)
T ss_dssp             -------T-EEEEEEES---SS-HHHHHHHHHHHEEEE--------EEEEEEEEGGG-S-HHHHHHHHHC
T ss_pred             -------CceeEEEEEhhhhCCCcHHHHHHHHheeccC--------cEEEEEEecccCcCHHHHHHHHHH
Confidence                   358999887655433   35544444 7775        77777655443  22344444443

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=91.18  E-value=0.45  Score=47.43  Aligned_cols=38  Identities=21%  Similarity=0.199  Sum_probs=28.8

Q ss_pred             EEEEEcCCCchhHHHHHhcCCEEEEE---eCCHHHHHHHHH
Q psy16898        165 LVLDVFAGVGPFSIPAARRGAIVAAN---DLNPDSYAWLQA  202 (324)
Q Consensus       165 ~VLDl~~G~G~~al~~a~~g~~V~av---D~~~~a~~~a~~  202 (324)
                      ++||+|||+|+||..+..++..+..+   |..+..++.|.+
T Consensus       120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale  160 (506)
T PF03141_consen  120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE  160 (506)
T ss_pred             EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence            78999999999999999998755443   445555666543

; GO: 0008168 methyltransferase activity

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=91.07  E-value=0.44  Score=43.35  Aligned_cols=86  Identities=13%  Similarity=0.164  Sum_probs=67.6

Q ss_pred             HhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        157 TKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       157 ~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +..+.+|.. |..+||+=-++..+.+..-++.++|+.|.-...++.|....     .++.+..+|.+..+.....     
T Consensus        84 i~~lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~d-----~~vrv~~~DG~~~l~a~LP-----  152 (279)
T COG2961          84 VRQLNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAGD-----RRVRVLRGDGFLALKAHLP-----  152 (279)
T ss_pred             HHHhCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCCC-----cceEEEecCcHHHHhhhCC-----
Confidence            445566665 89999999998888887779999999999999999988732     2799999999887665322     


Q ss_pred             hcccCCCCCCCCcccEEEECChhhhH
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATAV  262 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a~  262 (324)
                               ++.+--.|++|||+-..
T Consensus       153 ---------P~erRglVLIDPPfE~~  169 (279)
T COG2961         153 ---------PKERRGLVLIDPPFELK  169 (279)
T ss_pred             ---------CCCcceEEEeCCCcccc
Confidence                     13457799999999643

>KOG1201|consensus

Probab=91.07  E-value=1.8  Score=40.40  Aligned_cols=58  Identities=28%  Similarity=0.279  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      .|+.||=-|+|.|   .+++.+|++|++++..|+|+...+...+.++.+|     ++..+..|+.+
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g-----~~~~y~cdis~   97 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG-----EAKAYTCDISD   97 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC-----ceeEEEecCCC
Confidence            6889999999988   5788999999999999999999888888887666     57777777644

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=90.72  E-value=0.42  Score=42.10  Aligned_cols=39  Identities=15%  Similarity=0.191  Sum_probs=29.2

Q ss_pred             CEEEEEcCCCc----hhHHHHHh-----cC--CEEEEEeCCHHHHHHHHH
Q psy16898        164 DLVLDVFAGVG----PFSIPAAR-----RG--AIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       164 ~~VLDl~~G~G----~~al~~a~-----~g--~~V~avD~~~~a~~~a~~  202 (324)
                      -+|+.+||++|    ++|+.+..     .+  .+|+|.|+|+.+++.|++
T Consensus        33 lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~   82 (196)
T PF01739_consen   33 LRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA   82 (196)
T ss_dssp             EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence            48999999999    45555555     12  399999999999999875

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=90.67  E-value=0.5  Score=43.74  Aligned_cols=39  Identities=21%  Similarity=0.088  Sum_probs=35.0

Q ss_pred             CCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHH
Q psy16898        163 GDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQ  201 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~  201 (324)
                      ..+||-.|||.|.++..+|++|..|.|+|.|--|+-...
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~   95 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASN   95 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHH
Confidence            468999999999999999999999999999999865543

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PRK11524 putative methyltransferase; Provisional

Probab=90.41  E-value=0.47  Score=44.15  Aligned_cols=31  Identities=16%  Similarity=0.142  Sum_probs=24.8

Q ss_pred             CeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        214 PISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       214 ~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      +.+++++|+.+++....                ..+||.|++|||+.
T Consensus         8 ~~~i~~gD~~~~l~~l~----------------~~siDlIitDPPY~   38 (284)
T PRK11524          8 AKTIIHGDALTELKKIP----------------SESVDLIFADPPYN   38 (284)
T ss_pred             CCEEEeccHHHHHHhcc----------------cCcccEEEECCCcc
Confidence            56899999999886542                24599999999984

>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=90.25  E-value=0.22  Score=45.57  Aligned_cols=37  Identities=32%  Similarity=0.415  Sum_probs=32.3

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHH
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPD  195 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~  195 (324)
                      ...+|+.++|+|+|||..|-.+-+.|..|+++|+--.
T Consensus        24 ~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~y   60 (330)
T COG3392          24 EDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEYY   60 (330)
T ss_pred             cccCCCeeeeeccCccHHHHHHHHhcchhhhchHHHH
Confidence            3557889999999999999999999999999998543

>KOG2920|consensus

Probab=89.85  E-value=0.27  Score=45.51  Aligned_cols=39  Identities=26%  Similarity=0.244  Sum_probs=35.0

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC-CEEEEEeCCHHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG-AIVAANDLNPDSYA  198 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g-~~V~avD~~~~a~~  198 (324)
                      .-.|++|||+|||.|--++.+..+| +.|...|.|.+.++
T Consensus       114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             EecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            4478999999999999999999988 49999999998883

>KOG1099|consensus

Probab=89.57  E-value=1.5  Score=39.53  Aligned_cols=113  Identities=20%  Similarity=0.216  Sum_probs=68.1

Q ss_pred             CCEEEEEcCCCchhHHHHHhc--------CC---EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHH
Q psy16898        163 GDLVLDVFAGVGPFSIPAARR--------GA---IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDAR  231 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~~--------g~---~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~  231 (324)
                      =++|+|||+..|.++..++++        +.   +++|||+.+-           -.  ++ .|..+++|+...-..   
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aP--I~-GV~qlq~DIT~~sta---  104 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------AP--IE-GVIQLQGDITSASTA---  104 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------Cc--cC-ceEEeecccCCHhHH---
Confidence            358999999999999999873        22   3999999873           23  44 577888888653211   


Q ss_pred             HhhhhhcccCCCCCCCCcccEEEECC-hhh-hH----HHHHHHhccchhh--cCCCCCCCEEEEEEcccCCChhHH
Q psy16898        232 AHLVRWSQSEGNSTGGTAVARVIMNL-PAT-AV----EYVRYLKVLTREE--FGKLSRPPVLYLYCFLPKMDLETK  299 (324)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~fD~Vi~np-P~~-a~----~~l~~~~~l~~~~--~~~~~~~g~vh~y~f~~~~~~~~~  299 (324)
                      +.+.+.+       ++...|.||+|= |+. .+    +|+++=.-+...+  .-.+++||.|..--|........-
T Consensus       105 e~Ii~hf-------ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLy  173 (294)
T KOG1099|consen  105 EAIIEHF-------GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLY  173 (294)
T ss_pred             HHHHHHh-------CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHH
Confidence            1111111       135689999984 552 22    2332221122211  123567888888888777655443

>KOG0024|consensus

Probab=89.44  E-value=0.66  Score=43.87  Aligned_cols=45  Identities=29%  Similarity=0.300  Sum_probs=37.9

Q ss_pred             hhccCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898        158 KEVREGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQA  202 (324)
Q Consensus       158 ~~~~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~~  202 (324)
                      ..++.|.+||-+|||. |-.++..|+ -|+ +|+.+|+++..++.|++
T Consensus       165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            3477899999999994 666677777 477 99999999999999987

>KOG3924|consensus

Probab=89.38  E-value=1.7  Score=42.09  Aligned_cols=69  Identities=14%  Similarity=0.156  Sum_probs=50.2

Q ss_pred             HHhh--ccCCCEEEEEcCCCchhHHHHHhc-CC-EEEEEeCCHHHHHHHHHHHHHhCCC-----C-CCCeEEEeccHHH
Q psy16898        156 VTKE--VREGDLVLDVFAGVGPFSIPAARR-GA-IVAANDLNPDSYAWLQASIRLNERQ-----V-KTPISATQKDARD  224 (324)
Q Consensus       156 ~~~~--~~~g~~VLDl~~G~G~~al~~a~~-g~-~V~avD~~~~a~~~a~~N~~~n~~~-----l-~~~v~~~~~D~~~  224 (324)
                      ++++  +.+++...|||+|+|.....+|.. ++ .-+|+|+....-+++..|...+++.     - .+.+..++++..+
T Consensus       184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~  262 (419)
T KOG3924|consen  184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLD  262 (419)
T ss_pred             HHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCC
Confidence            4444  568899999999999999888773 44 7889999888888887776655210     1 2357788887654

>KOG2793|consensus

Probab=89.32  E-value=0.74  Score=42.05  Aligned_cols=46  Identities=33%  Similarity=0.262  Sum_probs=33.6

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhC
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNE  208 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~  208 (324)
                      ....||++|+|||-.++.+|.. ++.|..-|. +..+..++.|...|+
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~-~~~~~~L~~~~~~~~  132 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDL-PKVVENLKFNRDKNN  132 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCc-hhhHHHHHHhhhhhh
Confidence            4557999999999999999984 557766664 556666666655554

>KOG3115|consensus

Probab=88.99  E-value=0.7  Score=40.92  Aligned_cols=69  Identities=17%  Similarity=0.229  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCC-----CCCCCeEEEeccHHHHHHHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNER-----QVKTPISATQKDARDFLQTDAR  231 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~-----~l~~~v~~~~~D~~~~~~~~~~  231 (324)
                      +.-.+.|+|||-|++.+.++-.  ..-++|.||--...++.++.+..-..     .+ .|+.+...++..++.+...
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~-~ni~vlr~namk~lpn~f~  135 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQY-PNISVLRTNAMKFLPNFFE  135 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccc-ccceeeeccchhhccchhh
Confidence            4457899999999999999874  44899999999888888887765321     02 2788999999998887654

>KOG0822|consensus

Probab=88.81  E-value=0.48  Score=47.48  Aligned_cols=61  Identities=20%  Similarity=0.275  Sum_probs=46.9

Q ss_pred             CEEEEEcCCCchhHHHHHh------cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHH
Q psy16898        164 DLVLDVFAGVGPFSIPAAR------RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQ  227 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~------~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~  227 (324)
                      .+++-+|+|-|+++-...+      +..+++|||.||.|+-.++. .+...  -+++|+++..|.+.+..
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~--W~~~Vtii~~DMR~w~a  435 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFEC--WDNRVTIISSDMRKWNA  435 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhh--hcCeeEEEeccccccCC
Confidence            3688999999999754443      33489999999999998865 33333  45689999999998864

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=88.64  E-value=2.8  Score=43.73  Aligned_cols=102  Identities=12%  Similarity=-0.008  Sum_probs=62.0

Q ss_pred             CEEEEEcCCCchhHHHHHh---------c---C-C-EEEEEeCCHHHHHHHHHHH--------------HH-----hCCC
Q psy16898        164 DLVLDVFAGVGPFSIPAAR---------R---G-A-IVAANDLNPDSYAWLQASI--------------RL-----NERQ  210 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~---------~---g-~-~V~avD~~~~a~~~a~~N~--------------~~-----n~~~  210 (324)
                      -+|+|+|-|+|...+.+.+         .   . . +++++|..|-..+.+.+-.              ..     .+  
T Consensus        59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g--  136 (662)
T PRK01747         59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG--  136 (662)
T ss_pred             EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC--
Confidence            4899999999997766652         1   1 2 8999997653322222211              11     12  


Q ss_pred             C-----C-C--CeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECC--hhh-----hHHHHHHHhc-cchh
Q psy16898        211 V-----K-T--PISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNL--PAT-----AVEYVRYLKV-LTRE  274 (324)
Q Consensus       211 l-----~-~--~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~np--P~~-----a~~~l~~~~~-l~~~  274 (324)
                      +     . +  +++++.+|+++.+.+..                 ..||++..|+  |..     ..+++..+.. +++ 
T Consensus       137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~-----------------~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~-  198 (662)
T PRK01747        137 CHRLLFDDGRVTLDLWFGDANELLPQLD-----------------ARADAWFLDGFAPAKNPDMWSPNLFNALARLARP-  198 (662)
T ss_pred             ceEEEecCCcEEEEEEecCHHHHHHhcc-----------------ccccEEEeCCCCCccChhhccHHHHHHHHHHhCC-
Confidence            1     1 1  35678899999887642                 2399999995  543     2356666655 443 


Q ss_pred             hcCCCCCCCEEEEEEccc
Q psy16898        275 EFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       275 ~~~~~~~~g~vh~y~f~~  292 (324)
                             ++.+-.||...
T Consensus       199 -------~~~~~t~t~a~  209 (662)
T PRK01747        199 -------GATLATFTSAG  209 (662)
T ss_pred             -------CCEEEEeehHH
Confidence                   46777776443

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=88.61  E-value=0.9  Score=42.05  Aligned_cols=66  Identities=11%  Similarity=0.158  Sum_probs=43.1

Q ss_pred             EEeccceeecCcChHHHHH-HHhhc----c-CCCEEEEEcCCCc----hhHHHHHhc-------CCEEEEEeCCHHHHHH
Q psy16898        137 KMDFSKVYWNSRLSTEHER-VTKEV----R-EGDLVLDVFAGVG----PFSIPAARR-------GAIVAANDLNPDSYAW  199 (324)
Q Consensus       137 ~id~~~~f~~~r~~~e~~~-~~~~~----~-~g~~VLDl~~G~G----~~al~~a~~-------g~~V~avD~~~~a~~~  199 (324)
                      .++.+.||.++..-.+-.. ++..+    . ..-+|+-++|+||    ++|+.+.+.       ..+|+|.|+|..+++.
T Consensus        65 tin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~  144 (268)
T COG1352          65 TINVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEK  144 (268)
T ss_pred             hhccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHH
Confidence            3455667887764333222 22211    1 2348999999999    455555552       2489999999999999


Q ss_pred             HHH
Q psy16898        200 LQA  202 (324)
Q Consensus       200 a~~  202 (324)
                      |+.
T Consensus       145 A~~  147 (268)
T COG1352         145 ARA  147 (268)
T ss_pred             Hhc
Confidence            975

>KOG3201|consensus

Probab=87.50  E-value=1.8  Score=37.01  Aligned_cols=47  Identities=19%  Similarity=0.150  Sum_probs=37.3

Q ss_pred             CCCEEEEEcCCCchh-HHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhC
Q psy16898        162 EGDLVLDVFAGVGPF-SIPAARR--GAIVAANDLNPDSYAWLQASIRLNE  208 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~-al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~  208 (324)
                      .|.+||+||.|--.+ ++.+|.+  ...|.--|-|+.+++..++-...|.
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~   78 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNM   78 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccc
Confidence            578999999995444 5666654  3489999999999999998887774

>KOG2360|consensus

Probab=86.46  E-value=0.65  Score=44.78  Aligned_cols=62  Identities=21%  Similarity=0.220  Sum_probs=52.7

Q ss_pred             cCCCEEEEEcCCCchhHHHHHh--c-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        161 REGDLVLDVFAGVGPFSIPAAR--R-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~--~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .+|..|+|.||-.|.-+.++|.  + -.+++|.|.++.-.+..++-++.-|  .+ .++...+|+...
T Consensus       212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag--~~-~~~~~~~df~~t  276 (413)
T KOG2360|consen  212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAG--VS-IVESVEGDFLNT  276 (413)
T ss_pred             CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcC--CC-ccccccccccCC
Confidence            3688999999999999999887  3 3489999999999999999998888  76 677778887664

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=85.23  E-value=2.2  Score=33.91  Aligned_cols=91  Identities=22%  Similarity=0.243  Sum_probs=54.3

Q ss_pred             CCchhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcc
Q psy16898        172 GVGPFSIPAAR-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAV  250 (324)
Q Consensus       172 G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  250 (324)
                      |+|.+++.+|+ .|++|+++|.++.-.+.+++    .+  ..   .++..+-.++..+...-            .++..+
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~G--a~---~~~~~~~~~~~~~i~~~------------~~~~~~   59 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LG--AD---HVIDYSDDDFVEQIREL------------TGGRGV   59 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT--ES---EEEETTTSSHHHHHHHH------------TTTSSE
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hc--cc---ccccccccccccccccc------------cccccc
Confidence            57889999998 68899999999998888764    34  32   23333222232222110            012358


Q ss_pred             cEEEECChhhhHHHHHHHhccchhhcCCCCCCCEEEEEEccc
Q psy16898        251 ARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       251 D~Vi~npP~~a~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                      |+|+--... ...+-.++..++++        |.+.++.+..
T Consensus        60 d~vid~~g~-~~~~~~~~~~l~~~--------G~~v~vg~~~   92 (130)
T PF00107_consen   60 DVVIDCVGS-GDTLQEAIKLLRPG--------GRIVVVGVYG   92 (130)
T ss_dssp             EEEEESSSS-HHHHHHHHHHEEEE--------EEEEEESSTS
T ss_pred             eEEEEecCc-HHHHHHHHHHhccC--------CEEEEEEccC
Confidence            988876652 22233333335554        7788777766

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=83.80  E-value=13  Score=32.97  Aligned_cols=57  Identities=14%  Similarity=0.005  Sum_probs=40.2

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDA  222 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~  222 (324)
                      ++++||=.| |+|.++..+++    .|++|++++.++...+.+.+.++..+  .. ++.++.+|+
T Consensus        11 ~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~-~~~~~~~d~   71 (247)
T PRK08945         11 KDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG--GP-QPAIIPLDL   71 (247)
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC--CC-CceEEEecc
Confidence            677788777 57777776665    68899999999987776666555433  22 466666665

>KOG0919|consensus

Probab=83.69  E-value=0.81  Score=41.53  Aligned_cols=41  Identities=29%  Similarity=0.330  Sum_probs=31.8

Q ss_pred             CEEEEEcCCCchhH--HHHHhcCC-EEEEEeCCHHHHHHHHHHH
Q psy16898        164 DLVLDVFAGVGPFS--IPAARRGA-IVAANDLNPDSYAWLQASI  204 (324)
Q Consensus       164 ~~VLDl~~G~G~~a--l~~a~~g~-~V~avD~~~~a~~~a~~N~  204 (324)
                      -+||++++|.|++-  +..|.-.+ -|-|+|+|+.|-+.-..|.
T Consensus         4 LrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~   47 (338)
T KOG0919|consen    4 LRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNY   47 (338)
T ss_pred             eehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCc
Confidence            47999999999874  44454334 7889999999888877774

>PRK13699 putative methylase; Provisional

Probab=83.60  E-value=2.1  Score=38.58  Aligned_cols=30  Identities=13%  Similarity=0.086  Sum_probs=24.5

Q ss_pred             eEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        215 ISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       215 v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      .+++++|+.+.+.....                .++|.||.|||+.
T Consensus         2 ~~l~~gD~le~l~~lpd----------------~SVDLIiTDPPY~   31 (227)
T PRK13699          2 SRFILGNCIDVMARFPD----------------NAVDFILTDPPYL   31 (227)
T ss_pred             CeEEechHHHHHHhCCc----------------cccceEEeCCCcc
Confidence            46889999999887533                4599999999995

>KOG3987|consensus

Probab=82.98  E-value=0.26  Score=43.71  Aligned_cols=41  Identities=27%  Similarity=0.172  Sum_probs=35.3

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~  202 (324)
                      ...++||+|+|-|.++..++-.-.+|+|-|+|..|...+++
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~k  152 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKK  152 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhh
Confidence            44699999999999999998765689999999999887754

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=82.76  E-value=2.8  Score=40.04  Aligned_cols=44  Identities=34%  Similarity=0.451  Sum_probs=34.5

Q ss_pred             hccCCCEEEEEcCC-CchhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAG-VGPFSIPAAR-RGA-IVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G-~G~~al~~a~-~g~-~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++|.-.||| +|.-++.-|+ .|+ +++|+|+|++-+++|++
T Consensus       182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~  228 (366)
T COG1062         182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK  228 (366)
T ss_pred             cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence            36689999888886 5555566666 566 99999999999999864

>KOG1098|consensus

Probab=82.68  E-value=1.1  Score=45.86  Aligned_cols=36  Identities=28%  Similarity=0.465  Sum_probs=31.9

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCH
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNP  194 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~  194 (324)
                      .+.++..||||||..|++..-+++.   |.-|+|||+-|
T Consensus        41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p   79 (780)
T KOG1098|consen   41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP   79 (780)
T ss_pred             cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence            4678999999999999999999883   56899999988

>PRK06172 short chain dehydrogenase; Provisional

Probab=82.40  E-value=18  Score=32.13  Aligned_cols=58  Identities=19%  Similarity=0.054  Sum_probs=41.8

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      +++++|-.|+ +|.++..+++    .|++|+.++.++..++.+.+.++..+    .++.++.+|+.+
T Consensus         6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~   67 (253)
T PRK06172          6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG----GEALFVACDVTR   67 (253)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC----CceEEEEcCCCC
Confidence            4667887775 5666655554    68899999999988777666665444    358888888865

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=82.12  E-value=23  Score=31.43  Aligned_cols=58  Identities=24%  Similarity=0.200  Sum_probs=42.0

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      +++++|-.| |+|.++..+++    +|++|+.++.+++.++.+.+.++..+    .++.++.+|+.+
T Consensus        10 ~~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~   71 (256)
T PRK06124         10 AGQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG----GAAEALAFDIAD   71 (256)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC----CceEEEEccCCC
Confidence            577888777 46666666554    68999999999887777666665544    257788888754

>PRK06194 hypothetical protein; Provisional

Probab=82.06  E-value=13  Score=33.69  Aligned_cols=57  Identities=19%  Similarity=0.340  Sum_probs=39.3

Q ss_pred             CCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        163 GDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      ++++| +-.|+|.++..+++    +|++|+.+|.++..++.....+...+  .  ++.++.+|+.+
T Consensus         6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~--~~~~~~~D~~d   66 (287)
T PRK06194          6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG--A--EVLGVRTDVSD   66 (287)
T ss_pred             CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--C--eEEEEECCCCC
Confidence            56777 44456777766654    68999999999877666555444333  2  57888999865

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=81.95  E-value=4.9  Score=34.29  Aligned_cols=80  Identities=6%  Similarity=-0.076  Sum_probs=49.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH--HHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD--FLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~--~~~~~~~~~~~~  236 (324)
                      ...+.+|+=++|=+-..++.-.. .+..++-.|.+...-..        +    ++ .|+.-|...  -+.+..      
T Consensus        23 ~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~--------~----~~-~F~fyD~~~p~~~~~~l------   83 (162)
T PF10237_consen   23 ALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF--------G----GD-EFVFYDYNEPEELPEEL------   83 (162)
T ss_pred             cCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc--------C----Cc-ceEECCCCChhhhhhhc------
Confidence            34577999999998888776622 34589999998753322        1    12 233334332  121111      


Q ss_pred             hcccCCCCCCCCcccEEEECChhhhHHHHHHH
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATAVEYVRYL  268 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~  268 (324)
                                ...||+||+|||-...+.+...
T Consensus        84 ----------~~~~d~vv~DPPFl~~ec~~k~  105 (162)
T PF10237_consen   84 ----------KGKFDVVVIDPPFLSEECLTKT  105 (162)
T ss_pred             ----------CCCceEEEECCCCCCHHHHHHH
Confidence                      1359999999999877766433

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PRK06949 short chain dehydrogenase; Provisional

Probab=81.88  E-value=20  Score=31.83  Aligned_cols=58  Identities=21%  Similarity=0.169  Sum_probs=41.7

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      .+++||-.| |+|.++..+++    .|++|++++.+++.++.+...+...+    .++.++.+|+.+
T Consensus         8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~   69 (258)
T PRK06949          8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG----GAAHVVSLDVTD   69 (258)
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEecCCC
Confidence            467777777 66777766665    58899999999988877766654333    257788888754

>KOG3045|consensus

Probab=81.86  E-value=2.5  Score=38.88  Aligned_cols=30  Identities=17%  Similarity=0.116  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNP  194 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~  194 (324)
                      ...+|.|+|||-+-++.   +.-..|++.|+.+
T Consensus       180 ~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a  209 (325)
T KOG3045|consen  180 KNIVIADFGCGEAKIAS---SERHKVHSFDLVA  209 (325)
T ss_pred             CceEEEecccchhhhhh---ccccceeeeeeec
Confidence            56689999999998876   3334788888764

>PRK07063 short chain dehydrogenase; Provisional

Probab=81.82  E-value=22  Score=31.70  Aligned_cols=60  Identities=27%  Similarity=0.248  Sum_probs=41.9

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      .++++|-.|+ +|.++..+++    +|++|+.++.++..++.+.+.+...+  ...++.++.+|+.+
T Consensus         6 ~~k~vlVtGa-s~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~   69 (260)
T PRK07063          6 AGKVALVTGA-AQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDV--AGARVLAVPADVTD   69 (260)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc--CCceEEEEEccCCC
Confidence            4667887775 4566655554    78999999999988877776665422  12357888888754

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=81.75  E-value=1.2  Score=35.29  Aligned_cols=33  Identities=15%  Similarity=-0.045  Sum_probs=28.5

Q ss_pred             CCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHH
Q psy16898        163 GDLVLDVFAGVGPFSIPAARRGAIVAANDLNPD  195 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~  195 (324)
                      -...+|+|||.|-+.-.+.+-|..=.|+|.-..
T Consensus        59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~R   91 (112)
T PF07757_consen   59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDARRR   91 (112)
T ss_pred             CCceEEccCCchHHHHHHHhCCCCccccccccc
Confidence            457999999999999999998999999997653

; GO: 0008168 methyltransferase activity

>PRK05867 short chain dehydrogenase; Provisional

Probab=81.50  E-value=16  Score=32.56  Aligned_cols=58  Identities=21%  Similarity=0.107  Sum_probs=40.9

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      .|+++|-.|++ |.++..++    +.|++|+.++.+++.++.+.+.++..+    .++.++.+|+.+
T Consensus         8 ~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~   69 (253)
T PRK05867          8 HGKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG----GKVVPVCCDVSQ   69 (253)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC----CeEEEEEccCCC
Confidence            46788877764 55555555    468999999999988877766665433    257778888754

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=80.55  E-value=3.2  Score=41.97  Aligned_cols=42  Identities=38%  Similarity=0.344  Sum_probs=34.7

Q ss_pred             cCCCEEEEEcCCC-chhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        161 REGDLVLDVFAGV-GPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       161 ~~g~~VLDl~~G~-G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      .++++|+=+|||+ |..++.+|+ .|+.|+++|.+++.++.+++
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes  206 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES  206 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            3688999999995 556666676 58899999999999988765

>PRK07890 short chain dehydrogenase; Provisional

Probab=80.51  E-value=17  Score=32.24  Aligned_cols=58  Identities=19%  Similarity=0.033  Sum_probs=40.5

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      +++++|=.| |+|.++..+++    +|++|+.++.++...+.+.+.+...+    .++.++..|+.+
T Consensus         4 ~~k~vlItG-a~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~   65 (258)
T PRK07890          4 KGKVVVVSG-VGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG----RRALAVPTDITD   65 (258)
T ss_pred             CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC----CceEEEecCCCC
Confidence            456777555 56777766554    78999999999987766665554333    257888888854

>PRK07102 short chain dehydrogenase; Provisional

Probab=80.44  E-value=13  Score=32.88  Aligned_cols=58  Identities=17%  Similarity=0.174  Sum_probs=40.3

Q ss_pred             CEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        164 DLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      ++++-.| |+|.++..+++    +|++|++++.++...+...+++....  - .++.++.+|+.+.
T Consensus         2 ~~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~-~~~~~~~~Dl~~~   63 (243)
T PRK07102          2 KKILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG--A-VAVSTHELDILDT   63 (243)
T ss_pred             cEEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc--C-CeEEEEecCCCCh
Confidence            3566444 66777776655    68899999999987766555554433  2 3688999988764

>PRK08862 short chain dehydrogenase; Provisional

Probab=80.26  E-value=18  Score=32.06  Aligned_cols=59  Identities=17%  Similarity=0.030  Sum_probs=40.9

Q ss_pred             CCCEEEEEcCCCch---hHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGP---FSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~---~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      .|+++|=.|++.|.   ++..++++|++|+.++.++..++.+.+.++..+  .  .+..+..|..+
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~--~--~~~~~~~D~~~   65 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT--D--NVYSFQLKDFS   65 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--C--CeEEEEccCCC
Confidence            46678877777653   445555689999999999998887766665544  2  35666666544

>PRK05854 short chain dehydrogenase; Provisional

Probab=80.14  E-value=24  Score=32.97  Aligned_cols=61  Identities=21%  Similarity=0.091  Sum_probs=41.5

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|++++=.|+ +|++|..+++    .|++|+.+..+++..+.+.+.+....  -..++.++..|+.+.
T Consensus        13 ~gk~~lITGa-s~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~--~~~~v~~~~~Dl~d~   77 (313)
T PRK05854         13 SGKRAVVTGA-SDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAV--PDAKLSLRALDLSSL   77 (313)
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CCCceEEEEecCCCH
Confidence            4667776665 4666666554    68999999999887776666664432  122588888888654

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=80.06  E-value=12  Score=29.14  Aligned_cols=69  Identities=20%  Similarity=0.216  Sum_probs=45.8

Q ss_pred             EcCCCchhHHHHHh---cCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH--HHHHHHHhhhhhcccCC
Q psy16898        169 VFAGVGPFSIPAAR---RGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF--LQTDARAHLVRWSQSEG  242 (324)
Q Consensus       169 l~~G~G~~al~~a~---~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~--~~~~~~~~~~~~~~~~~  242 (324)
                      +-||.|.++..+++   ++. .|+.+|.+++.++.+++    .      .+.++.+|+.+.  +.+..            
T Consensus         2 vI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~------~~~~i~gd~~~~~~l~~a~------------   59 (116)
T PF02254_consen    2 VIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----E------GVEVIYGDATDPEVLERAG------------   59 (116)
T ss_dssp             EEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----T------TSEEEES-TTSHHHHHHTT------------
T ss_pred             EEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----c------ccccccccchhhhHHhhcC------------
Confidence            34788999988887   344 99999999998777642    2      267899998764  22211            


Q ss_pred             CCCCCCcccEEEECChhhhHH
Q psy16898        243 NSTGGTAVARVIMNLPATAVE  263 (324)
Q Consensus       243 ~~~~~~~fD~Vi~npP~~a~~  263 (324)
                          ..+.+.|++-.+.....
T Consensus        60 ----i~~a~~vv~~~~~d~~n   76 (116)
T PF02254_consen   60 ----IEKADAVVILTDDDEEN   76 (116)
T ss_dssp             ----GGCESEEEEESSSHHHH
T ss_pred             ----ccccCEEEEccCCHHHH
Confidence                13488888877665443

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	324
2zzn_A	336	The Complex Structure Of Atrm5 And Trnacys Length =		5e-21
2zzm_A	336	The Complex Structure Of Atrm5 And Trnaleu Length =		1e-20
2yx1_A	336	Crystal Structure Of M.Jannaschii Trna M1g37 Methyl		5e-20
3a27_A	272	Crystal Structure Of M. Jannaschii Tyw2 In Complex		7e-16
3a25_A	301	Crystal Structure Of P. Horikoshii Tyw2 In Complex		5e-14
3k6r_A	278	Crystal Structure Of Putative Transferase Ph0793 Fr		3e-13

>pdb|2ZZN|A Chain A, The Complex Structure Of Atrm5 And Trnacys Length = 336

Iteration: 1
 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 109/205 (53%), Gaps = 28/205 (13%)
Query: 63  SFTSVGHIVHCNLREELIEH-KFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAG 121
           S+  VG +V   + +E+ E  +  IG +    +P C+ V  +   +   +R  ++E LAG
Sbjct: 96  SYDVVGDLVILQISDEVDEKIRKEIGELAYKLIP-CKGVFRRKSEVKGEFRVRELEHLAG 154
Query: 122 KDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAA 181
           ++  +T+HKENG    +D +KVY++ RL  E  R+ K+V   D+V+D+FAGVGPFSI A 
Sbjct: 155 ENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIMKKVSLNDVVVDMFAGVGPFSI-AC 213
Query: 182 RRGAIVAANDLNPDSYAWLQASIRLNERQVK-TPISATQKDARDFLQTDARAHLVRWSQS 240
           +    + A D+NP +   L+ +I+LN+ + K  PI +                 VR    
Sbjct: 214 KNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSD----------------VREVDV 257
Query: 241 EGNSTGGTAVARVIMNLPATAVEYV 265
           +GN        RVIMNLP  A +++
Sbjct: 258 KGN--------RVIMNLPKFAHKFI 274

>pdb|2ZZM|A Chain A, The Complex Structure Of Atrm5 And Trnaleu Length = 336

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 108/205 (52%), Gaps = 28/205 (13%)
Query: 63  SFTSVGHIVHCNLREELIEH-KFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAG 121
           S+  VG +V   + +E+ E  +  IG +    +P C+ V  +   +   +R  ++E LAG
Sbjct: 96  SYDVVGDLVILQISDEVDEKIRKEIGELAYKLIP-CKGVFRRKSEVKGEFRVRELEHLAG 154
Query: 122 KDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAA 181
           ++  +T+HKENG    +D +KVY++ RL  E  R+ K+V   D+V+D+FAGVGPFSI A 
Sbjct: 155 ENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIMKKVSLNDVVVDMFAGVGPFSI-AC 213
Query: 182 RRGAIVAANDLNPDSYAWLQASIRLNERQVK-TPISATQKDARDFLQTDARAHLVRWSQS 240
           +    + A D+NP +   L  +I+LN+ + K  PI +                 VR    
Sbjct: 214 KNAKKIYAIDINPHAIELLXKNIKLNKLEHKIIPILSD----------------VREVDV 257
Query: 241 EGNSTGGTAVARVIMNLPATAVEYV 265
           +GN        RVIMNLP  A +++
Sbjct: 258 KGN--------RVIMNLPKFAHKFI 274

>pdb|2YX1|A Chain A, Crystal Structure Of M.Jannaschii Trna M1g37 Methyltransferase Length = 336

Iteration: 1
 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 107/205 (52%), Gaps = 28/205 (13%)
Query: 63  SFTSVGHIVHCNLREELIEH-KFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAG 121
           S+  VG +V   + +E+ E  +  IG +    +P C+ V  +   +   +R  ++E LAG
Sbjct: 96  SYDVVGDLVILQISDEVDEKIRKEIGELAYKLIP-CKGVFRRKSEVKGEFRVRELEHLAG 154
Query: 122 KDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAA 181
           ++  +T+HKENG    +D +KVY++ RL  E  R+ K+V   D+V+D FAGVGPFSI A 
Sbjct: 155 ENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIXKKVSLNDVVVDXFAGVGPFSI-AC 213
Query: 182 RRGAIVAANDLNPDSYAWLQASIRLNERQVK-TPISATQKDARDFLQTDARAHLVRWSQS 240
           +    + A D+NP +   L+ +I+LN+ + K  PI +                 VR    
Sbjct: 214 KNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSD----------------VREVDV 257
Query: 241 EGNSTGGTAVARVIMNLPATAVEYV 265
           +GN        RVI NLP  A +++
Sbjct: 258 KGN--------RVIXNLPKFAHKFI 274

>pdb|3A27|A Chain A, Crystal Structure Of M. Jannaschii Tyw2 In Complex With Adomet Length = 272

Iteration: 1
 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 75/132 (56%), Gaps = 3/132 (2%)
Query: 93  KVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTE 152
           K   C+ ++     I   +R   +++L GK+   T+HKE GC FK+D +K+ W+     E
Sbjct: 51  KRTKCKAILLYTTQITGEFRTPHVKILYGKETE-TIHKEYGCLFKLDVAKIMWSQGNIEE 109
Query: 153 HERVTKEVREGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQ 210
            +R+     E ++V+D+FAG+G F+IP A+  +  +V A + NP +Y +L  +I+LN+  
Sbjct: 110 RKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN 169
Query: 211 VKTPISATQKDA 222
              PI A  +D 
Sbjct: 170 NVIPILADNRDV 181

>pdb|3A25|A Chain A, Crystal Structure Of P. Horikoshii Tyw2 In Complex With Adomet Length = 301

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 5/134 (3%)
Query: 93  KVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTE 152
           +V   +TV+ K H I    R    ELL G D  VT+H ENG  +K+D +K+ ++     E
Sbjct: 81  EVLGVKTVLRKGH-IHGETRKPDYELLYGSDT-VTVHVENGIKYKLDVAKIMFSPANVKE 138
Query: 153 HERVTKEVREGDLVLDVFAGVGPFSIPAARRG-AIVAANDLNPDSYAWLQASIRLNERQV 211
             R+ K  +  +LV+D+FAG+G  S+P A  G A V A + +P ++ +L  +I LN  +V
Sbjct: 139 RVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLN--KV 196
Query: 212 KTPISATQKDARDF 225
           +  +SA   D RDF
Sbjct: 197 EDRMSAYNMDNRDF 210

>pdb|3K6R|A Chain A, Crystal Structure Of Putative Transferase Ph0793 From Pyrococcus Horikoshii Length = 278

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 93  KVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTE 152
           +V   +TV+ K H I    R    ELL G D  VT+H ENG  +K+D +K+ ++     E
Sbjct: 58  EVLGVKTVLRKGH-IHGETRKPDYELLYGSDT-VTVHVENGIKYKLDVAKIXFSPANVKE 115
Query: 153 HERVTKEVREGDLVLDVFAGVGPFSIPAARRG-AIVAANDLNPDSYAWLQASIRLNERQV 211
             R  K  +  +LV+D FAG+G  S+P A  G A V A + +P ++ +L  +I LN  +V
Sbjct: 116 RVRXAKVAKPDELVVDXFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLN--KV 173
Query: 212 KTPISATQKDARDF 225
           +   SA   D RDF
Sbjct: 174 EDRXSAYNXDNRDF 187

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	324
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	1e-58
2frn_A	278	Hypothetical protein PH0793; structural genomics,	9e-49
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	8e-48
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	1e-07
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	2e-06
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	9e-06
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	1e-05
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	1e-05
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	3e-05
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	5e-05
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	9e-05
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	5e-04
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	7e-04
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	7e-04
3ll7_A	410	Putative methyltransferase; methytransferase, stru	8e-04

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336

 Score =  190 bits (485), Expect = 1e-58
 Identities = 73/285 (25%), Positives = 122/285 (42%), Gaps = 50/285 (17%)

Query: 42  YDNFSAEDILKAILP----DNVAMSSFTSVGHIVHCNLREELIE-HKFIIGRVLLDKVPS 96
               S  +I+         + +   S+  VG +V   + +E+ E  +  IG +    +P 
Sbjct: 71  IKKPSFREIISKKYRKEIDEGLISLSYDVVGDLVILQISDEVDEKIRKEIGELAYKLIP- 129

Query: 97  CETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERV 156
           C+ V  +   +   +R  ++E LAG++  +T+HKENG    +D +KVY++ RL  E  R+
Sbjct: 130 CKGVFRRKSEVKGEFRVRELEHLAGENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARI 189

Query: 157 TKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPIS 216
            K+V   D+V+D+FAGVGPFSI        + A D+NP +   L+ +I+LN  +++  I 
Sbjct: 190 MKKVSLNDVVVDMFAGVGPFSIACK-NAKKIYAIDINPHAIELLKKNIKLN--KLEHKII 246

Query: 217 ATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEF 276
               D R+                           RVIMNLP  A +++           
Sbjct: 247 PILSDVREV---------------------DVKGNRVIMNLPKFAHKFIDKA-------L 278

Query: 277 GKLSRPPVLYLYCFLPKMDLETK-------------KKIKSYDPS 308
             +    V++ Y      D   K             + +KSY P 
Sbjct: 279 DIVEEGGVIHYYTIGKDFDKAIKLFEKKCDCEVLEKRIVKSYAPR 323

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278

 Score =  163 bits (414), Expect = 9e-49
 Identities = 61/256 (23%), Positives = 108/256 (42%), Gaps = 35/256 (13%)

Query: 46  SAEDILKAILPDNVAM---SSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVN 102
              +IL   LP+ +       +  +G ++   LR EL  +K  I  V  + V   +TV+ 
Sbjct: 9   RIREILSKELPEELVKLLPKRWVRIGDVLLLPLRPELEPYKHRIAEVYAE-VLGVKTVLR 67

Query: 103 KAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVRE 162
           K   I    R    ELL G D +   H ENG  +K+D +K+ ++     E  R+ K  + 
Sbjct: 68  K-GHIHGETRKPDYELLYGSDTVTV-HVENGIKYKLDVAKIMFSPANVKERVRMAKVAKP 125

Query: 163 GDLVLDVFAGVGPFSIPAARRGAI-VAANDLNPDSYAWLQASIRLNERQVKTPISATQKD 221
            +LV+D+FAG+G  S+P A  G   V A + +P ++ +L  +I LN  +V+  +SA   D
Sbjct: 126 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLN--KVEDRMSAYNMD 183

Query: 222 ARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSR 281
            RDF   +                       ++M       E++        +       
Sbjct: 184 NRDFPGENIADR-------------------ILMGYVVRTHEFI-------PKALSIAKD 217

Query: 282 PPVLYLYCFLPKMDLE 297
             +++ +  +P+  + 
Sbjct: 218 GAIIHYHNTVPEKLMP 233

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} Length = 272

 Score =  160 bits (407), Expect = 8e-48
 Identities = 54/264 (20%), Positives = 106/264 (40%), Gaps = 39/264 (14%)

Query: 41  TYDNFSAEDILKAILPDNV-AMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCET 99
           ++ +      L+ +    +     +  +G +V         E + I+      K   C+ 
Sbjct: 4   SHHHHHHSSGLEVLFQGPLHMGIKYQKIGDVVIVKKELSEDEIREIV------KRTKCKA 57

Query: 100 VVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKE 159
           ++     I   +R   +++L GK+     HKE GC FK+D +K+ W+     E +R+   
Sbjct: 58  ILLYTTQITGEFRTPHVKILYGKETETI-HKEYGCLFKLDVAKIMWSQGNIEERKRMAFI 116

Query: 160 VREGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISA 217
             E ++V+D+FAG+G F+IP A+  +  +V A + NP +Y +L  +I+LN+     PI  
Sbjct: 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPI-- 174

Query: 218 TQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFG 277
              D RD    D                       VIM       +++       ++   
Sbjct: 175 -LADNRDVELKDVADR-------------------VIMGYVHKTHKFLDKTFEFLKDR-- 212

Query: 278 KLSRPPVLYLYCFLPKMDLETKKK 301
                 V++ +  + +  +  +  
Sbjct: 213 -----GVIHYHETVAEKIMYERPI 231

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} Length = 393

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 22/176 (12%)

Query: 57  DNVAMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNF-- 114
             V +    S G       RE  +          L +V + + V  ++            
Sbjct: 115 GEVLVLQVRSRGMEAL---REVWLP--------ALLEVVAPKGVYERSDVEARRQEGLPE 163

Query: 115 QMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEH----ERVTKEVREGDLVLDVF 170
           ++ ++ G+   V   +E+G  F +  +     +    +           VR G+ VLDV+
Sbjct: 164 RVGVVYGEVPEVLEVEEDGLRFPIPLAL-AQKTGYYLDQRENRRLFEAMVRPGERVLDVY 222

Query: 171 AGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFL 226
           + VG F++ AAR+GA   A D + ++   L  +      +V         +A   L
Sbjct: 223 SYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDI----RHGEALPTL 274

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 21/164 (12%)

Query: 82  HKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQME-------LLAGKDCMVTMHKENGC 134
            K  +   +++  P  ETV  K     NT R+ + E       +L GK+   T+ +E   
Sbjct: 133 FKLDVAEAIMEVEPGIETVFEK-----NTGRSRRREGLPEIERVLLGKEKYRTIIQEGRA 187

Query: 135 TFKMDFSK----VYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAI-VAA 189
            F +D        + + R +     + K V+ GD VLDVF   G F+I AA  GA  V  
Sbjct: 188 KFIVDMRGQKTGFFLDQREN--RLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIG 245

Query: 190 NDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAH 233
            D +P +    + + +LN   V+  +      A + ++   +  
Sbjct: 246 IDKSPRAIETAKENAKLN--GVEDRMKFIVGSAFEEMEKLQKKG 287

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* Length = 378

 Score = 46.0 bits (108), Expect = 9e-06
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 10/101 (9%)

Query: 127 TMHKENGCTFKM------DFSKVYWNSRLSTEHERVTKEVR--EGDLVLDVFAGVGPFSI 178
              +E      +        S V++N R++   + V   +      +VLD  +  G   I
Sbjct: 4   IEVQEGKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGI 63

Query: 179 PAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISA 217
             A       V  ND++ D+Y  ++ ++ LN          
Sbjct: 64  RFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKG 104

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 6/107 (5%)

Query: 130 KENGCTFKMDFSKVYWNSRLSTEHERVTKEVRE---GDLVLDVFAGVGPFSIPAARRGAI 186
           +E+G    +D       +    +        R       VL+ F+  G F++ A   G  
Sbjct: 186 EEHGMKLLVDIQH-GHKTGYYLDQRDSRLATRRYVENKRVLNCFSYTGGFAVSALMGGCS 244

Query: 187 -VAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA 232
            V + D + ++    + ++ LN+  +       + D    L+T    
Sbjct: 245 QVVSVDTSQEALDIARQNVELNKLDLSK-AEFVRDDVFKLLRTYRDR 290

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 Length = 332

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 9/109 (8%)

Query: 130 KENGCTFKMDFSKVYWNSRLSTEHERVTKEVRE-------GDLVLDVFAGVGPFSIPAAR 182
              G  F   F+  + +  +  E     + ++           VL++F   G  S+ AA 
Sbjct: 115 SLLGVEFLGRFTA-FRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAA 173

Query: 183 RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDAR 231
            GA V   D +  +  W + +  L   +   PI    +DA  F+Q + R
Sbjct: 174 AGAEVTHVDASKKAIGWAKENQVLAGLEQA-PIRWICEDAMKFIQREER 221

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Length = 385

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 130 KENGCTFKMDFSK-----VYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRG 184
            ENG ++ +  +      ++ + R       +      G  VL++F+    FS+ AA  G
Sbjct: 177 LENGISYNVFLNDGLMTGIFLDQRQV--RNELINGSAAGKTVLNLFSYTAAFSVAAAMGG 234

Query: 185 AI-VAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL 234
           A+   + DL   S A   A    N   +         D  D+ +   R HL
Sbjct: 235 AMATTSVDLAKRSRALSLAHFEANHLDMAN-HQLVVMDVFDYFKYARRHHL 284

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 43.0 bits (101), Expect = 5e-05
 Identities = 17/58 (29%), Positives = 27/58 (46%)

Query: 138 MDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPD 195
            D +   + SR+ T    + K +++   VLD+  GVG FS      G  V   D++ D
Sbjct: 14  TDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISED 71

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Length = 382

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 130 KENGCTFKMDFSKVYWNSRLSTEHERVTKEVRE--GDLVLDVFAGVGPFSIPAARRGAIV 187
           +E    + +D       +    +       +    G+  LDVF+  G F++  A     V
Sbjct: 176 QEGRVRYLVDLRA-GQKTGAYLDQRENRLYMERFRGERALDVFSYAGGFALHLALGFREV 234

Query: 188 AANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFL 226
            A D + ++    + + RLN       +   + +A D L
Sbjct: 235 VAVDSSAEALRRAEENARLNGLG---NVRVLEANAFDLL 270

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISAT 218
           E  + D+ +DV  G G  ++  A R   V A D NP++ +  + +++ +   +   ++  
Sbjct: 30  EPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRH--GLGDNVTLM 87

Query: 219 QKDARDFLQTDARAHLV 235
           + DA + L       + 
Sbjct: 88  EGDAPEALCKIPDIDIA 104

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* Length = 392

 Score = 40.2 bits (93), Expect = 7e-04
 Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 19/122 (15%)

Query: 126 VTMHKENGCTFKMDFS--------KVYWNSRLSTEH-------ERVTKEVREGDLVLDVF 170
           + + +E      +            V++N R+           E + K++     V D  
Sbjct: 1   MEIVQEGIAKIIVPEIPKTVSSDMPVFYNPRMRVNRDLAVLGLEYLCKKLGRPVKVADPL 60

Query: 171 AGVGPFSIPAARRGAI---VAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQ 227
           +  G  +I      +      AND++  +   ++ + +LN             +A  FL+
Sbjct: 61  SASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDR-YEIHGMEANFFLR 119

Query: 228 TD 229
            +
Sbjct: 120 KE 121

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 17/73 (23%), Positives = 28/73 (38%)

Query: 153 HERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVK 212
            E  T+       VL++ AG+G  + P    G  V A +L+    A  +  +      V+
Sbjct: 73  REFATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVR 132

Query: 213 TPISATQKDARDF 225
              +  Q D   F
Sbjct: 133 DRCTLVQGDMSAF 145

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQ 219
           +REG  V+D+  G+G   I    + +     + N ++    + +I L   + K  ++   
Sbjct: 91  IREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGK-DVNILT 149

Query: 220 KDARDFLQTDARAH 233
            D +++L      H
Sbjct: 150 GDFKEYLPLIKTFH 163

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	324
3k6r_A	278	Putative transferase PH0793; structural genomics,	100.0
2frn_A	278	Hypothetical protein PH0793; structural genomics,	100.0
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	100.0
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	100.0
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.97
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.97
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.96
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.95
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.95
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.91
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.89
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.83
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.77
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.77
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.73
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.67
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.61
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.58
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.56
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.55
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.55
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.54
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.54
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.53
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.52
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.51
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.51
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.51
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.51
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.51
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.5
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.48
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.48
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.46
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.46
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.44
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.43
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.42
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.42
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.41
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.41
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.41
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.4
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.39
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.39
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.39
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.39
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.39
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.39
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.39
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.38
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.38
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.37
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.37
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.36
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.36
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.35
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.35
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.35
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.34
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.34
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.34
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.34
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.34
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.33
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.33
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.32
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.32
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.32
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.31
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.3
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.3
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.3
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.29
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.29
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.29
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.29
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.29
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.28
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.27
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.27
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.27
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.26
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.26
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.25
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.24
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.24
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.24
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.24
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.24
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.23
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.23
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.23
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.23
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.23
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.23
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.22
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.22
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.22
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.22
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.22
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.22
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.21
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.21
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.21
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.2
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.2
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.2
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.2
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.2
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.19
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.19
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.19
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.19
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.19
2o07_A	304	Spermidine synthase; structural genomics, structur	99.19
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.18
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.18
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.18
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.18
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.18
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.18
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.17
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.17
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.17
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.17
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.16
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.16
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.16
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.16
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.16
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.16
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.16
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.15
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.15
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.14
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.14
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.13
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.13
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.13
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.12
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.12
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.12
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.12
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.12
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.12
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.12
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.11
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.1
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.1
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.1
3ocj_A	305	Putative exported protein; structural genomics, PS	99.1
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.1
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.09
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.09
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.09
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.09
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.09
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.08
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.08
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.08
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.08
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.08
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.08
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.07
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.07
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.07
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.07
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.07
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.07
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.07
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.07
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.06
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.06
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.06
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.06
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.06
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.05
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.05
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.05
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.05
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.04
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.04
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.04
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.04
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.04
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.03
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.02
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.02
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.02
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.01
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.01
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.0
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.0
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.99
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.99
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.99
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.99
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.99
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.98
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.97
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.96
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.96
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.96
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.96
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.95
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.95
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.94
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.93
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.93
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.93
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.92
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.92
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.92
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.9
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.89
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.88
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.88
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.88
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.87
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.87
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.85
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.85
3lkd_A	542	Type I restriction-modification system methyltrans	98.84
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.84
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.84
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.82
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.82
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.81
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.81
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.8
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.8
3khk_A	544	Type I restriction-modification system methylation	98.79
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.79
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.79
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.78
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.76
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.75
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.74
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.73
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.72
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.71
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.7
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.7
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.69
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.68
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.68
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.67
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.67
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.67
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.65
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.65
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.64
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.63
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.57
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.56
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.55
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.52
3ufb_A	530	Type I restriction-modification system methyltran	98.51
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.51
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.51
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.48
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.47
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.47
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.47
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.44
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.4
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.38
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.34
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.34
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	98.32
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.32
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.29
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.29
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	98.23
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	98.2
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.19
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.17
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.13
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.08
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.07
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.06
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.02
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	97.98
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.98
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.98
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	97.94
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.9
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.88
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.85
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.84
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.8
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	97.79
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	97.77
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.75
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.65
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	97.6
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	97.58
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	97.58
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.56
3me5_A	482	Cytosine-specific methyltransferase; structural ge	97.56
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.48
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.48
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.45
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	97.39
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.27
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.17
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.01
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	96.77
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	96.63
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	96.17
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.03
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	95.75
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	94.93
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	93.28
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	92.61
3gms_A	340	Putative NADPH:quinone reductase; structural genom	91.44
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	91.19
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.64
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	90.4
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	90.1
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	89.98
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	89.91
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	89.89
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	89.86
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	89.39
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	89.34
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	89.21
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	88.94
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	88.9
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	88.85
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	88.71
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	88.61
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	88.51
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	88.47
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	88.38
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	88.37
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	88.28
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	88.24
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	88.19
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	88.17
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	88.16
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	88.16
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	88.08
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	87.98
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	87.81
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	87.77
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	87.66
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	87.66
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	87.63
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	87.37
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	87.32
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	87.25
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	87.25
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	87.25
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	87.14
3imf_A	257	Short chain dehydrogenase; structural genomics, in	86.94
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	86.79
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	86.74
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	86.72
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	86.7
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	86.59
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	86.37
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	86.33
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	86.25
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	86.15
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	86.14
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	86.13
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	86.04
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	86.04
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	86.03
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	86.02
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	85.95
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	85.91
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	85.75
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	85.65
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	85.59
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	85.51
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	85.47
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	85.32
1xkq_A	280	Short-chain reductase family member (5D234); parra	85.32
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	85.26
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	85.21
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	85.21
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	85.11
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	85.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	84.98
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	84.87
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	84.82
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	84.71
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	84.62
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	84.29
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	84.28
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	84.26
3rih_A	293	Short chain dehydrogenase or reductase; structural	83.99
3cxt_A	291	Dehydrogenase with different specificities; rossma	83.95
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	83.88
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	83.85
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	83.75
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	83.65
1xhl_A	297	Short-chain dehydrogenase/reductase family member	83.33
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	83.29
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	83.22
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	83.11
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	83.0
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	82.94
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	82.88
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	82.88
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	82.83
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	82.72
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	82.51
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	82.51
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	82.43
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	82.38
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	82.29
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	82.24
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	82.18
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	82.13
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	82.05
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	82.02
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	81.92
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	81.86
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	81.86
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	81.82
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	81.8
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	81.63
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	81.62
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	81.57
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	81.53
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	81.5
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	81.43
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	81.41
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	81.38
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	81.34
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	81.3
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	81.27
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	81.27
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	81.17
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	81.17
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	81.11
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	81.09
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	81.0
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	80.88
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	80.87
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	80.76
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	80.73
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	80.71
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	80.65
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	80.64
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	80.55
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	80.43
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	80.38
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	80.33
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	80.33
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	80.29
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	80.18
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	80.16
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	80.05

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=100.00  E-value=9e-45  Score=334.52  Aligned_cols=240  Identities=29%  Similarity=0.455  Sum_probs=201.5

Q ss_pred             ChHHHHHhccCCC---CCCceeEEECCEEEEEeCchhhhhHHHHHHHHHhhCCCceEEEEcCCCCCcccccceeeEEccC
Q psy16898         46 SAEDILKAILPDN---VAMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGK  122 (324)
Q Consensus        46 ~~~~~l~~~~p~~---~~~~~~d~~G~i~vi~~~~~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~~~~~~~~l~G~  122 (324)
                      +.+++|+..+|++   .+|++||++||++++++++++.++++.|++++++. +++++|+.+. .+.+.+|.+++++|+|+
T Consensus         9 ~~~e~l~~~lp~~l~~~~P~~~e~~Gdi~il~~~~~~~~~~~~i~~~l~~~-~~vk~V~~k~-~i~g~~R~~~~e~L~G~   86 (278)
T 3k6r_A            9 RIREILSKELPEELVKLLPKRWVRIGDVLLLPLRPELEPYKHRIAEVYAEV-LGVKTVLRKG-HIHGETRKPDYELLYGS   86 (278)
T ss_dssp             HHHHHHTTTSCGGGGGGSCSCCEEETTEEEECC-CTTGGGHHHHHHHHHHH-HTCSEEEECC-----------CEEEECS
T ss_pred             HHHHHHhhhCChhHHhhCCCCceEECCEEEEeCChhHhHHHHHHHHHHHhc-cCCeEEEEeC-CcCCccccccceEEecC
Confidence            4678999999987   69999999999999999999999999999999987 4699999884 56788999999999999


Q ss_pred             CCeEEEEEeCCeEEEEeccceeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHH
Q psy16898        123 DCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQ  201 (324)
Q Consensus       123 ~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~  201 (324)
                      + +++.++|||++|.+|++++||++++.+||.++.+.+++|++|||+|||+|+||+++|++|+ +|+|+|+||.|++.++
T Consensus        87 ~-~~~~~~E~G~~~~~D~~k~~f~~~~~~er~ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~  165 (278)
T 3k6r_A           87 D-TVTVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLV  165 (278)
T ss_dssp             C-CEEEEEETTEEEEEETTTSCCCGGGHHHHHHHHHHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHH
T ss_pred             C-cEEEEEECCEEEEEeccceEEcCCcHHHHHHHHHhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHH
Confidence            7 6788999999999999999999999999999999999999999999999999999999875 9999999999999999


Q ss_pred             HHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCC
Q psy16898        202 ASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLS  280 (324)
Q Consensus       202 ~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~  280 (324)
                      +|+++|+  +.++++++++|++++..+                   ..||+|+||||..+.+|++.+.. ++++      
T Consensus       166 ~N~~~N~--v~~~v~~~~~D~~~~~~~-------------------~~~D~Vi~~~p~~~~~~l~~a~~~lk~g------  218 (278)
T 3k6r_A          166 ENIHLNK--VEDRMSAYNMDNRDFPGE-------------------NIADRILMGYVVRTHEFIPKALSIAKDG------  218 (278)
T ss_dssp             HHHHHTT--CTTTEEEECSCTTTCCCC-------------------SCEEEEEECCCSSGGGGHHHHHHHEEEE------
T ss_pred             HHHHHcC--CCCcEEEEeCcHHHhccc-------------------cCCCEEEECCCCcHHHHHHHHHHHcCCC------
Confidence            9999999  988899999999876432                   35999999999999999998877 7765      


Q ss_pred             CCCEEEEEEcccCCCh------hHHh---------------HhhhcCCCceEEEEeec
Q psy16898        281 RPPVLYLYCFLPKMDL------ETKK---------------KIKSYDPSYATLIRGIR  317 (324)
Q Consensus       281 ~~g~vh~y~f~~~~~~------~~~~---------------~v~~y~~~~~~~i~~~~  317 (324)
                        |++|+|+|.+.++.      ...+               .|++|+|+.++.|++++
T Consensus       219 --G~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~~~~~Vk~yaP~~~hvv~D~~  274 (278)
T 3k6r_A          219 --AIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLNELKIKRYAPGVWHVVLDLR  274 (278)
T ss_dssp             --EEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             --CEEEEEeeecccccchhHHHHHHHHHHHcCCcEEEEEEEEEEeECcCccEEEEEEE
Confidence              99999999875321      1111               14567788888777775

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=100.00  E-value=3.3e-35  Score=270.98  Aligned_cols=216  Identities=29%  Similarity=0.450  Sum_probs=172.9

Q ss_pred             CChHHHHHhccCCC---CCCceeEEECCEEEEEeCchhhhhHHHHHHHHHhhCCCceEEEEcCCCCCcccccceeeEEcc
Q psy16898         45 FSAEDILKAILPDN---VAMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAG  121 (324)
Q Consensus        45 ~~~~~~l~~~~p~~---~~~~~~d~~G~i~vi~~~~~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~~~~~~~~l~G  121 (324)
                      ++.+++|+.++|++   .+|.+||+|||+++++++.++.++++.|+++|.+.+ ++++|+.+ +...+..++.+.++++|
T Consensus         8 ~~~~~~~~~~~~~~~~d~lp~~~d~~g~~~vv~~~~~~~~~~~~i~~~l~~~~-~~~~i~~~-~~~~~~~~~~~~~~l~G   85 (278)
T 2frn_A            8 PRIREILSKELPEELVKLLPKRWVRIGDVLLLPLRPELEPYKHRIAEVYAEVL-GVKTVLRK-GHIHGETRKPDYELLYG   85 (278)
T ss_dssp             -----------CCCTTTCSCSCCEEETTEEECC--CCSCSCCTHHHHHHHHHH-TCSEEEEC-C----------CEEEEC
T ss_pred             CCHHHHHHhhCChhHhhhcCceEEEECCEEEEeCChhHHHHHHHHHHHHHHhc-CCCEEEEe-CCccCCccccceEEEEC
Confidence            46789999999988   489999999999999997678889999999999988 69999999 44566777788899999


Q ss_pred             CCCeEEEEEeCCeEEEEeccceeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHH
Q psy16898        122 KDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWL  200 (324)
Q Consensus       122 ~~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a  200 (324)
                      ++ ..+.+.|+|++|.+|+..+||+++...++.++.+.+++|++|||+|||+|.+++.+|+.|+ +|+|+|+|+.|++.|
T Consensus        86 ~~-~~~~~~e~g~~f~~d~~~~~f~~~~~~~~~~l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a  164 (278)
T 2frn_A           86 SD-TVTVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFL  164 (278)
T ss_dssp             SC-CEEEEEETTEEEEEETTTSCCCGGGHHHHHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHH
T ss_pred             CC-CEEEEEECCEEEEEEccceeEcCCcHHHHHHHHHhCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence            85 6677789999999999999999998888888888888899999999999999999999887 799999999999999


Q ss_pred             HHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCC
Q psy16898        201 QASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKL  279 (324)
Q Consensus       201 ~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~  279 (324)
                      ++|++.|+  +.++++++++|+.++..                   ...||+|++|||.....+++.+.. |+++     
T Consensus       165 ~~n~~~n~--~~~~v~~~~~D~~~~~~-------------------~~~fD~Vi~~~p~~~~~~l~~~~~~Lkpg-----  218 (278)
T 2frn_A          165 VENIHLNK--VEDRMSAYNMDNRDFPG-------------------ENIADRILMGYVVRTHEFIPKALSIAKDG-----  218 (278)
T ss_dssp             HHHHHHTT--CTTTEEEECSCTTTCCC-------------------CSCEEEEEECCCSSGGGGHHHHHHHEEEE-----
T ss_pred             HHHHHHcC--CCceEEEEECCHHHhcc-------------------cCCccEEEECCchhHHHHHHHHHHHCCCC-----
Confidence            99999999  88679999999987644                   135999999999887788887766 7775     


Q ss_pred             CCCCEEEEEEccc
Q psy16898        280 SRPPVLYLYCFLP  292 (324)
Q Consensus       280 ~~~g~vh~y~f~~  292 (324)
                         |+++++++++
T Consensus       219 ---G~l~~~~~~~  228 (278)
T 2frn_A          219 ---AIIHYHNTVP  228 (278)
T ss_dssp             ---EEEEEEEEEE
T ss_pred             ---eEEEEEEeec
Confidence               9999999886

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=100.00  E-value=1.6e-34  Score=273.37  Aligned_cols=238  Identities=29%  Similarity=0.435  Sum_probs=197.3

Q ss_pred             ceeEEEEe-eccC-CChHHHHHhccCCC----CCCceeEEECCEEEEEeCchhhhh-HHHHHHHHHhhCCCceEEEEcCC
Q psy16898         33 FTHAEVLL-TYDN-FSAEDILKAILPDN----VAMSSFTSVGHIVHCNLREELIEH-KFIIGRVLLDKVPSCETVVNKAH  105 (324)
Q Consensus        33 ~~~~~~~~-~y~~-~~~~~~l~~~~p~~----~~~~~~d~~G~i~vi~~~~~~~~~-~~~I~~~l~~~~~~i~~V~~k~~  105 (324)
                      ++.+++.. .|.. ++.+++|+.++|++    ++|.++|+||+++++++.+...++ ++.|+++|.+.+|. ++|+.+.+
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~d~~g~~~vv~~~~~~~~~~~~~i~~~l~~~~~~-~~v~~~~~  138 (336)
T 2yx1_A           60 LVDKELEEKKIIKKPSFREIISKKYRKEIDEGLISLSYDVVGDLVILQISDEVDEKIRKEIGELAYKLIPC-KGVFRRKS  138 (336)
T ss_dssp             EEECCCCCC-----CCSHHHHHHHTHHHHTTSSBCSCCEEETTEEEECBCSCSCHHHHHHHHHHHHHHSCC-SEEEEEC-
T ss_pred             EEEeecccccccccCCHHHHHhhhCCchhccccCCceEEEECCEEEEecCcchhhhHHHHHHHHHHHHCCC-cEEEEcCC
Confidence            55666666 6664 59999999999952    799999999999999987765555 88999999999987 99999875


Q ss_pred             CCCcccccceeeEEccCCCeEEEEEeCCeEEEEeccceeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhcCC
Q psy16898        106 TIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGA  185 (324)
Q Consensus       106 ~~~~~~~~~~~~~l~G~~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~  185 (324)
                      .+.+.+++...++++|+....+.++|+|++|.+|+.++||+++.++++.++.+.+.+|++|||+|||+|.+++. |+.++
T Consensus       139 ~~~g~~r~~~~~~l~G~~~~~~~~~e~g~~f~~d~~~~~~~~~~~~er~~i~~~~~~~~~VLDlg~G~G~~~l~-a~~~~  217 (336)
T 2yx1_A          139 EVKGEFRVRELEHLAGENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIMKKVSLNDVVVDMFAGVGPFSIA-CKNAK  217 (336)
T ss_dssp             ------CCCCEEEEEECCCCEEEEEETTEEEEEETTTSCCCGGGHHHHHHHHHHCCTTCEEEETTCTTSHHHHH-TTTSS
T ss_pred             CCCCcccccceEEEeCCCCcEEEEEECCEEEEEehHHhccCCccHHHHHHHHHhcCCCCEEEEccCccCHHHHh-ccCCC
Confidence            56778888888999998766778899999999999999999999999998888888999999999999999999 88666


Q ss_pred             EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHH
Q psy16898        186 IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYV  265 (324)
Q Consensus       186 ~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l  265 (324)
                      +|+|+|+|+.|++.|++|++.|+  +.++++++++|+.+++                     ..||+|++|||..+..++
T Consensus       218 ~V~~vD~s~~ai~~a~~n~~~n~--l~~~v~~~~~D~~~~~---------------------~~fD~Vi~dpP~~~~~~l  274 (336)
T 2yx1_A          218 KIYAIDINPHAIELLKKNIKLNK--LEHKIIPILSDVREVD---------------------VKGNRVIMNLPKFAHKFI  274 (336)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCGGGCC---------------------CCEEEEEECCTTTGGGGH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECChHHhc---------------------CCCcEEEECCcHhHHHHH
Confidence            99999999999999999999999  8668999999998865                     139999999999888888


Q ss_pred             HHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhHhhh
Q psy16898        266 RYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKS  304 (324)
Q Consensus       266 ~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~  304 (324)
                      +.+.. ++++        |++++++|++. .....+.++.
T Consensus       275 ~~~~~~L~~g--------G~l~~~~~~~~-~~~~~~~l~~  305 (336)
T 2yx1_A          275 DKALDIVEEG--------GVIHYYTIGKD-FDKAIKLFEK  305 (336)
T ss_dssp             HHHHHHEEEE--------EEEEEEEEESS-SHHHHHHHHH
T ss_pred             HHHHHHcCCC--------CEEEEEEeecC-chHHHHHHHH
Confidence            88877 6665        99999999988 5545544443

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=1.6e-32  Score=252.40  Aligned_cols=212  Identities=25%  Similarity=0.428  Sum_probs=149.0

Q ss_pred             ChHHHHHhccCCC-CCCceeEEECCEEEEEeCchhhhhHHHHHHHHHhhCCCceEEEEcCCCCCcccccceeeEEccCCC
Q psy16898         46 SAEDILKAILPDN-VAMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDC  124 (324)
Q Consensus        46 ~~~~~l~~~~p~~-~~~~~~d~~G~i~vi~~~~~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~~~~~~~~l~G~~~  124 (324)
                      -++.-|.-++|.. ++|++||+|||++++++.+...    .| ++|++. |++++|+++.+...+.+++...++++|++ 
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~d~~g~~~v~~~~~~~~----~i-~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~l~G~~-   81 (272)
T 3a27_A            9 HHSSGLEVLFQGPLHMGIKYQKIGDVVIVKKELSED----EI-REIVKR-TKCKAILLYTTQITGEFRTPHVKILYGKE-   81 (272)
T ss_dssp             ------------------CCEEETTEEEC-----------------------CCSEEEEC----------CCEEEECSC-
T ss_pred             cccCceEEEccCCCCCCCcceEECCEEEEeCCchHH----HH-HHHHhC-CCceEEEEcCCCCCCcccccceEEEeCCC-
Confidence            4555678888888 9999999999999999876542    67 888887 88999999987666777788899999997 


Q ss_pred             eEEEEEeCCeEEEEeccceeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHH
Q psy16898        125 MVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       125 ~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~  202 (324)
                      ..+.++|+|++|.+++..|||+++..+|+++++..+.++++|||+|||+|.+++.+|+++  ++|+|+|+|+.|++.|++
T Consensus        82 ~~~~~~e~g~~f~~~~~~~f~~~~~~~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~  161 (272)
T 3a27_A           82 TETIHKEYGCLFKLDVAKIMWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCE  161 (272)
T ss_dssp             CEEEEEETTEEEEEETTTSCCCGGGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHH
T ss_pred             cEEEEEECCEEEEEechhEEECCCchHHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence            556678999999999999999999999999888888899999999999999999999974  499999999999999999


Q ss_pred             HHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCC
Q psy16898        203 SIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSR  281 (324)
Q Consensus       203 N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~  281 (324)
                      |++.|+  +. ++.++++|+.++ ..                  ...||+|++|||.....++..+.. ++++       
T Consensus       162 n~~~n~--l~-~~~~~~~d~~~~-~~------------------~~~~D~Vi~d~p~~~~~~l~~~~~~Lkpg-------  212 (272)
T 3a27_A          162 NIKLNK--LN-NVIPILADNRDV-EL------------------KDVADRVIMGYVHKTHKFLDKTFEFLKDR-------  212 (272)
T ss_dssp             HHHHTT--CS-SEEEEESCGGGC-CC------------------TTCEEEEEECCCSSGGGGHHHHHHHEEEE-------
T ss_pred             HHHHcC--CC-CEEEEECChHHc-Cc------------------cCCceEEEECCcccHHHHHHHHHHHcCCC-------
Confidence            999999  87 799999999876 32                  135999999999866667777655 7765       


Q ss_pred             CCEEEEEEcccCC
Q psy16898        282 PPVLYLYCFLPKM  294 (324)
Q Consensus       282 ~g~vh~y~f~~~~  294 (324)
                       |+++++|+...+
T Consensus       213 -G~l~~s~~~~~~  224 (272)
T 3a27_A          213 -GVIHYHETVAEK  224 (272)
T ss_dssp             -EEEEEEEEEEGG
T ss_pred             -CEEEEEEcCccc
Confidence             899999998854

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.97  E-value=4e-29  Score=240.60  Aligned_cols=238  Identities=18%  Similarity=0.168  Sum_probs=176.8

Q ss_pred             eeEEECCEEEEEeC-chhhhhHHHHHHHHHhhCCCceEEEEcCCCCCcccccceeeEEccC-CCeEEEEEeCCeEEEEec
Q psy16898         63 SFTSVGHIVHCNLR-EELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGK-DCMVTMHKENGCTFKMDF  140 (324)
Q Consensus        63 ~~d~~G~i~vi~~~-~~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~~~~~~~~l~G~-~~~~~~~~e~g~~f~id~  140 (324)
                      .+|+||+++++++. ..+.++++.|+++|.+.+|++++|+.+.+...+   +...++++|+ .+..+.+.|+|++|.+++
T Consensus       111 ~vd~~g~~~vv~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~~~~~~~~---~~~~~~l~G~~~~~~~~v~e~g~~f~v~~  187 (385)
T 2b78_A          111 TIDCYGDFVLFSWYNSFVYQIRDEIVAAFRQVYPNFLGAYEKIRFKGI---DNVSAHLYGQEAPEQFLILENGISYNVFL  187 (385)
T ss_dssp             EEEEETTEEEEEECSHHHHHTHHHHHHHHHHHSTTCSEEEEEECC-------CCEEEEEESCCCSSEEEEETTEEEEECS
T ss_pred             EEEEECCEEEEEECcHHHHHhHHHHHHHHHHHhCCCCEEEEechhhcC---CccceeecCCCCCceEEEEECCEEEEEec
Confidence            46789999999975 456788899999999988889999998665433   4567889998 333355678999999999


Q ss_pred             c-----ceeecCcChHHHHHHHhhc-cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCC
Q psy16898        141 S-----KVYWNSRLSTEHERVTKEV-REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKT  213 (324)
Q Consensus       141 ~-----~~f~~~r~~~e~~~~~~~~-~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~  213 (324)
                      .     .||++++   +.+.++... .+|++|||+|||+|.+++.+|+.|+ +|+|+|+|+.|++.|++|++.|+  +.+
T Consensus       188 ~~~~~t~ff~~~~---~~~~~~~~~~~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~--~~~  262 (385)
T 2b78_A          188 NDGLMTGIFLDQR---QVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANH--LDM  262 (385)
T ss_dssp             SSSSCCSSCGGGH---HHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTT--CCC
T ss_pred             cccccCCcCCcHH---HHHHHHHHHhcCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCc
Confidence            8     7888887   444555554 7889999999999999999999877 99999999999999999999999  875


Q ss_pred             -CeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH------HHHHHHhccchhhcCCCCCCCEEE
Q psy16898        214 -PISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV------EYVRYLKVLTREEFGKLSRPPVLY  286 (324)
Q Consensus       214 -~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~------~~l~~~~~l~~~~~~~~~~~g~vh  286 (324)
                       +++++++|+.+++......              +..||+|++|||+.+.      ..++.+..+-......++++|++.
T Consensus       263 ~~v~~~~~D~~~~l~~~~~~--------------~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~  328 (385)
T 2b78_A          263 ANHQLVVMDVFDYFKYARRH--------------HLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLII  328 (385)
T ss_dssp             TTEEEEESCHHHHHHHHHHT--------------TCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             cceEEEECCHHHHHHHHHHh--------------CCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence             8999999999987654321              2459999999999531      112221110000011233458998


Q ss_pred             EEEcccCC-ChhHHhHhhhc--CCCceEEEEeecccCCCCC
Q psy16898        287 LYCFLPKM-DLETKKKIKSY--DPSYATLIRGIRRLSSDGP  324 (324)
Q Consensus       287 ~y~f~~~~-~~~~~~~v~~y--~~~~~~~i~~~~~~~~d~~  324 (324)
                      +.|+.... .+.+.+.++..  ..+..  +++...+++|||
T Consensus       329 ~~~~~~~~~~~~~~~~i~~~~~~~g~~--~~~~~~~~~D~p  367 (385)
T 2b78_A          329 ASTNAANMTVSQFKKQIEKGFGKQKHT--YLDLQQLPSDFA  367 (385)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHTTCCCE--EEEEECCCTTSC
T ss_pred             EEeCCCcCCHHHHHHHHHHHHHHcCCc--EEEeCCCCCCCC
Confidence            88877764 44566666443  23344  889999999998

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.97  E-value=5.5e-29  Score=240.02  Aligned_cols=230  Identities=20%  Similarity=0.258  Sum_probs=179.5

Q ss_pred             ceeEEECCEEEEEeCc-hhhhhHHHHHHHHHhhCCCceEEEEcCCCCCccccc--ceeeEEccCCCeEEEEEeCCeEEEE
Q psy16898         62 SSFTSVGHIVHCNLRE-ELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRN--FQMELLAGKDCMVTMHKENGCTFKM  138 (324)
Q Consensus        62 ~~~d~~G~i~vi~~~~-~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~~~--~~~~~l~G~~~~~~~~~e~g~~f~i  138 (324)
                      -.+|+||+++++++.+ .+..+++.|.++|.+.++ +++|+.|.+...+..++  ...++++|+.+..+.+.|+|++|.+
T Consensus       109 l~vD~y~~~~vvq~~~~~~~~~~~~i~~al~~~~~-~~~i~~k~~~~~r~~~g~~~~~~~l~G~~~~~~~v~E~g~~f~v  187 (393)
T 4dmg_A          109 LVVDRFGEVLVLQVRSRGMEALREVWLPALLEVVA-PKGVYERSDVEARRQEGLPERVGVVYGEVPEVLEVEEDGLRFPI  187 (393)
T ss_dssp             EEEEEETTEEEEEECSHHHHHTHHHHHHHHHHHHC-CSEEEECCCHHHHHHTTCCCCCEEEEECCCSEEEEEETTEEEEE
T ss_pred             EEEEEECCEEEEEECcHHHHHHHHHHHHHHHHHcC-CCEEEEEcCcchHhhcCCCcccceEecCCCCcEEEEECCEEEEE
Confidence            4789999999999855 578899999999999886 89999997642222222  2567899987677888999999999


Q ss_pred             eccc-----eeecCcChHHHHHHHhh-ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCC
Q psy16898        139 DFSK-----VYWNSRLSTEHERVTKE-VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVK  212 (324)
Q Consensus       139 d~~~-----~f~~~r~~~e~~~~~~~-~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~  212 (324)
                      |+..     +|++++   +.+.++.. .++|++|||+|||+|.+++.+|+.|+.|+|+|+|+.|++.|++|++.|+  +.
T Consensus       188 d~~~~~~tG~f~dqr---~~r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng--~~  262 (393)
T 4dmg_A          188 PLALAQKTGYYLDQR---ENRRLFEAMVRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLG--LR  262 (393)
T ss_dssp             ETTTCCTTSSCGGGH---HHHHHHHTTCCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT--CC
T ss_pred             echhccccCcCCCHH---HHHHHHHHHhcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhC--CC
Confidence            9887     899988   55555554 4459999999999999999999999899999999999999999999999  86


Q ss_pred             CCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh-------------HHHHHHHhc-cchhhcCC
Q psy16898        213 TPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA-------------VEYVRYLKV-LTREEFGK  278 (324)
Q Consensus       213 ~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a-------------~~~l~~~~~-l~~~~~~~  278 (324)
                        ..+.++|+.+++....                +. ||.|++|||..+             ..++..+.. +++     
T Consensus       263 --~~~~~~D~~~~l~~~~----------------~~-fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~Lkp-----  318 (393)
T 4dmg_A          263 --VDIRHGEALPTLRGLE----------------GP-FHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAE-----  318 (393)
T ss_dssp             --CEEEESCHHHHHHTCC----------------CC-EEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEE-----
T ss_pred             --CcEEEccHHHHHHHhc----------------CC-CCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCC-----
Confidence              3567999999875420                23 999999999843             133333333 444     


Q ss_pred             CCCCCEEEEEEcccC-CChhHHhHhhh--cCCCceEEEEeecccCCCCC
Q psy16898        279 LSRPPVLYLYCFLPK-MDLETKKKIKS--YDPSYATLIRGIRRLSSDGP  324 (324)
Q Consensus       279 ~~~~g~vh~y~f~~~-~~~~~~~~v~~--y~~~~~~~i~~~~~~~~d~~  324 (324)
                         ||++++++++.. ++..+.+.++.  -..+...++++...+++|||
T Consensus       319 ---GG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~i~~~~~~~~DhP  364 (393)
T 4dmg_A          319 ---EGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLRVHRVTYQPEDHP  364 (393)
T ss_dssp             ---EEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEEEEEEEECCTTSC
T ss_pred             ---CCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEEEcCCCCCCC
Confidence               588886666555 45555666643  23567789999999999998

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.96  E-value=2.8e-27  Score=228.34  Aligned_cols=234  Identities=16%  Similarity=0.181  Sum_probs=180.8

Q ss_pred             eeEEECCEEEEEeCc-hhhhhHHHHHHHHHhhCCCceEEEEcCCCCCccc--ccceeeEEccCCC-eEEEEEeCCeEEEE
Q psy16898         63 SFTSVGHIVHCNLRE-ELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTY--RNFQMELLAGKDC-MVTMHKENGCTFKM  138 (324)
Q Consensus        63 ~~d~~G~i~vi~~~~-~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~--~~~~~~~l~G~~~-~~~~~~e~g~~f~i  138 (324)
                      .+|+||+++++++.. .+.++++.|+++|.+.+ ++++|+.+.+...+..  .+...++++|+.+ ..+.+.++|++|.+
T Consensus       116 ~vd~~g~~~v~~~~~~~~~~~~~~i~~~l~~~~-~~~~i~~~~~~~~~~~~g~~~~~~~l~G~~~~~~~~~~~~g~~f~v  194 (396)
T 3c0k_A          116 TIDRFGNFLVLQLLSAGAEYQRAALISALQTLY-PECSIYDRSDVAVRKKEGMELTQGPVTGELPPALLPIEEHGMKLLV  194 (396)
T ss_dssp             EEEEETTEEEEEECSHHHHHTHHHHHHHHHHHC-TTSEEEEEECCTHHHHTTCCCEEEEEESCCCCSSEEEEETTEEEEE
T ss_pred             EEEEECCEEEEEECCHHHHHHHHHHHHHHHHhc-CCCEEEEeCCchhHhhcCCCccceeEcCCCCCceEEEEECCEEEEE
Confidence            357899999999754 56778899999999887 5899999843222211  2336788999864 34667899999999


Q ss_pred             ecc-----ceeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCC-
Q psy16898        139 DFS-----KVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQV-  211 (324)
Q Consensus       139 d~~-----~~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l-  211 (324)
                      ++.     .||++++   +.+.++..+.++++|||+|||+|++++.+|+.|+ +|+|+|+|+.+++.|++|++.|+  + 
T Consensus       195 ~~~~~~~tgff~~~~---~~~~~l~~~~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ng--l~  269 (396)
T 3c0k_A          195 DIQHGHKTGYYLDQR---DSRLATRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNK--LD  269 (396)
T ss_dssp             CTTTSSTTSSCGGGH---HHHHHHHHHCTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT--CC
T ss_pred             eccccccCCcCcCHH---HHHHHHHHhhCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CC
Confidence            998     7999888   5555566567899999999999999999999876 99999999999999999999999  8 


Q ss_pred             CCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh-------------HHHHHHHhc-cchhhcC
Q psy16898        212 KTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA-------------VEYVRYLKV-LTREEFG  277 (324)
Q Consensus       212 ~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a-------------~~~l~~~~~-l~~~~~~  277 (324)
                      .++++++++|+.+++......              +..||.|++|||+.+             ..++..+.. ++++   
T Consensus       270 ~~~v~~~~~D~~~~~~~~~~~--------------~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg---  332 (396)
T 3c0k_A          270 LSKAEFVRDDVFKLLRTYRDR--------------GEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEG---  332 (396)
T ss_dssp             GGGEEEEESCHHHHHHHHHHT--------------TCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEE---
T ss_pred             ccceEEEECCHHHHHHHHHhc--------------CCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCC---
Confidence            657999999999987654321              245999999999843             234443433 6654   


Q ss_pred             CCCCCCEEEEEEcccCCC-hhHHhHhhh-c-CCCceEEEEeecccCCCCC
Q psy16898        278 KLSRPPVLYLYCFLPKMD-LETKKKIKS-Y-DPSYATLIRGIRRLSSDGP  324 (324)
Q Consensus       278 ~~~~~g~vh~y~f~~~~~-~~~~~~v~~-y-~~~~~~~i~~~~~~~~d~~  324 (324)
                           |+++++|+..... +++.+.++. + ..+....+++...+++|||
T Consensus       333 -----G~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~~~~~~~d~p  377 (396)
T 3c0k_A          333 -----GILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHP  377 (396)
T ss_dssp             -----EEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEEEEECCTTSC
T ss_pred             -----cEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEECCCCCCCC
Confidence                 8999888877644 345555542 2 3556788889999999998

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.95  E-value=2.6e-26  Score=221.52  Aligned_cols=236  Identities=20%  Similarity=0.207  Sum_probs=179.0

Q ss_pred             eeEEECCEEEEEeCc-hhhhhHHHHHHHHHhhCCCceEEEEcCCCCCcc--cccceeeEEccCCCeEEEEEeCCeEEEEe
Q psy16898         63 SFTSVGHIVHCNLRE-ELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNT--YRNFQMELLAGKDCMVTMHKENGCTFKMD  139 (324)
Q Consensus        63 ~~d~~G~i~vi~~~~-~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~--~~~~~~~~l~G~~~~~~~~~e~g~~f~id  139 (324)
                      .+|+||+++++++.. .+.+.++.|+++|.+.++++++|+.+.+...+.  -.+...++++|+.+..+.+.|+|++|.++
T Consensus       113 ~vd~~g~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~e~g~~~~~~  192 (396)
T 2as0_A          113 IVDRFNDIASLQISSAGMERFKLDVAEAIMEVEPGIETVFEKNTGRSRRREGLPEIERVLLGKEKYRTIIQEGRAKFIVD  192 (396)
T ss_dssp             EEEEETTEEEEEECCHHHHTTHHHHHHHHHHHCTTCCEEEEEECSHHHHHTTCCCEEEEEEESCCCEEEEEETTEEEEEE
T ss_pred             EEEEECCEEEEEECcHHHHHHHHHHHHHHHHhCCCCCEEEEeCCcchHhhcCCCcccceecCCCCceEEEEeCCEEEEEe
Confidence            357899999999764 566788999999998867789999984322121  12336788999876667778999999999


Q ss_pred             cc----ceeecCcChHHHHHHHhhcc-CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCC
Q psy16898        140 FS----KVYWNSRLSTEHERVTKEVR-EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKT  213 (324)
Q Consensus       140 ~~----~~f~~~r~~~e~~~~~~~~~-~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~  213 (324)
                      +.    .||++++   +.+.++..+. ++++|||+|||+|.+++.+|+.|+ +|+|+|+|+.+++.|++|++.|+  +.+
T Consensus       193 ~~~~~tg~f~~~~---~~~~~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~--~~~  267 (396)
T 2as0_A          193 MRGQKTGFFLDQR---ENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNG--VED  267 (396)
T ss_dssp             SSSSSSCCCSTTH---HHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT--CGG
T ss_pred             ccccccCccCCHH---HHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCc
Confidence            84    4888877   5555555555 889999999999999999999876 99999999999999999999999  866


Q ss_pred             CeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh-------------HHHHHHHhccchhhcCCCC
Q psy16898        214 PISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA-------------VEYVRYLKVLTREEFGKLS  280 (324)
Q Consensus       214 ~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a-------------~~~l~~~~~l~~~~~~~~~  280 (324)
                      +++++++|+.+++......              ...||.|++|||+.+             ..++..+..       .++
T Consensus       268 ~v~~~~~d~~~~~~~~~~~--------------~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~-------~Lk  326 (396)
T 2as0_A          268 RMKFIVGSAFEEMEKLQKK--------------GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLN-------LVK  326 (396)
T ss_dssp             GEEEEESCHHHHHHHHHHT--------------TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHT-------TEE
T ss_pred             cceEEECCHHHHHHHHHhh--------------CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH-------hcC
Confidence            8999999999987654321              245999999999843             123333333       233


Q ss_pred             CCCEEEEEEcccCCC-hhHHhHhhh--cCCCceEEEEe-ecccCCCCC
Q psy16898        281 RPPVLYLYCFLPKMD-LETKKKIKS--YDPSYATLIRG-IRRLSSDGP  324 (324)
Q Consensus       281 ~~g~vh~y~f~~~~~-~~~~~~v~~--y~~~~~~~i~~-~~~~~~d~~  324 (324)
                      ++|++.+.++..... ..+.+.+..  -..+...+++. ...+++|||
T Consensus       327 pgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~d~p  374 (396)
T 2as0_A          327 DGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLEPYRTQAPDHP  374 (396)
T ss_dssp             EEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEESSCBBCSCTTSC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCCCCCCC
Confidence            458888777776544 345555532  23566788888 889999998

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.95  E-value=5.2e-26  Score=218.54  Aligned_cols=229  Identities=18%  Similarity=0.147  Sum_probs=176.6

Q ss_pred             eEEECCEEEEEeCc-hhhhhHHHHHHHHHhhCCCceEEEEcCCCCCccc--ccceeeEEccCCCeEEEEEeCCeEEEEec
Q psy16898         64 FTSVGHIVHCNLRE-ELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTY--RNFQMELLAGKDCMVTMHKENGCTFKMDF  140 (324)
Q Consensus        64 ~d~~G~i~vi~~~~-~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~--~~~~~~~l~G~~~~~~~~~e~g~~f~id~  140 (324)
                      +|+||+++++++.. .+.+.++.|+++|.+.+   ++|+.+.+...+..  .+...++++|+.+..+.+.|+|++|.+++
T Consensus       110 vd~~g~~~vv~~~~~~~~~~~~~i~~~l~~~~---~~i~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~e~g~~f~i~~  186 (382)
T 1wxx_A          110 VDYYAGHAVVQATAHAWEGLLPQVAEALRPHV---QSVLAKNDARTRELEGLPLYVRPLLGEVPERVQVQEGRVRYLVDL  186 (382)
T ss_dssp             EEEETTEEEEEECSHHHHTTHHHHHHHHGGGC---SEEEEEECCTHHHHTTCCCEEEEEESCCCSEEEEEETTEEEEEEC
T ss_pred             EEEECCEEEEEECcHHHHHHHHHHHHHHHHHh---hEEEEcCCchhhhhcCCCcccceecCCCCceEEEEECCEEEEEEc
Confidence            56899999999754 56678888999998765   89998843322221  23466788998766677889999999999


Q ss_pred             c-----ceeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCe
Q psy16898        141 S-----KVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPI  215 (324)
Q Consensus       141 ~-----~~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v  215 (324)
                      .     .+|++++   +.+.++..+ ++++|||+|||+|.+++.+|+.+.+|+|+|+|+.+++.|++|++.|+  +. ++
T Consensus       187 ~~~~~~g~f~~~~---~~~~~~~~~-~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~--~~-~~  259 (382)
T 1wxx_A          187 RAGQKTGAYLDQR---ENRLYMERF-RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNG--LG-NV  259 (382)
T ss_dssp             STTSCCCCCGGGH---HHHHHGGGC-CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTT--CT-TE
T ss_pred             hhcccCccccchH---HHHHHHHhc-CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcC--CC-Cc
Confidence            8     5888877   555666666 88999999999999999999986699999999999999999999999  87 59


Q ss_pred             EEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh-------------HHHHHHHhc-cchhhcCCCCC
Q psy16898        216 SATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA-------------VEYVRYLKV-LTREEFGKLSR  281 (324)
Q Consensus       216 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a-------------~~~l~~~~~-l~~~~~~~~~~  281 (324)
                      +++++|+.+++......              ...||+|++|||+.+             ..++..+.. |++        
T Consensus       260 ~~~~~d~~~~~~~~~~~--------------~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp--------  317 (382)
T 1wxx_A          260 RVLEANAFDLLRRLEKE--------------GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKE--------  317 (382)
T ss_dssp             EEEESCHHHHHHHHHHT--------------TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE--------
T ss_pred             eEEECCHHHHHHHHHhc--------------CCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCC--------
Confidence            99999999987654321              245999999999843             123333333 454        


Q ss_pred             CCEEEEEEcccCCCh-hHHhHhhh--cCCCceEEEEeecccCCCCC
Q psy16898        282 PPVLYLYCFLPKMDL-ETKKKIKS--YDPSYATLIRGIRRLSSDGP  324 (324)
Q Consensus       282 ~g~vh~y~f~~~~~~-~~~~~v~~--y~~~~~~~i~~~~~~~~d~~  324 (324)
                      +|++.+++++..... .+.+.++.  -..+...++++.+.+++|||
T Consensus       318 gG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~~~~~~~d~p  363 (382)
T 1wxx_A          318 GGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVEKRGQPFDHP  363 (382)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEECCCTTSC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCCCCC
Confidence            589998888776443 45565542  24566788999999999998

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.91  E-value=3.8e-23  Score=212.59  Aligned_cols=228  Identities=14%  Similarity=0.156  Sum_probs=161.0

Q ss_pred             CceeEEECCEEEEEeCc--------hhhhhHHHHHHHHHhhCC-CceEEEEcCCCCCcccccceeeEEccCCCeEEEEEe
Q psy16898         61 MSSFTSVGHIVHCNLRE--------ELIEHKFIIGRVLLDKVP-SCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKE  131 (324)
Q Consensus        61 ~~~~d~~G~i~vi~~~~--------~~~~~~~~I~~~l~~~~~-~i~~V~~k~~~~~~~~~~~~~~~l~G~~~~~~~~~e  131 (324)
                      .-.+|+||+++++|+..        .+...+..|.++|.+..+ .+++|+.|.+..   .++.......|+.+..+.+.|
T Consensus       430 gl~vD~y~d~lvvq~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~k~r~~---~~g~~~~~~~g~~~~~~~v~E  506 (703)
T 3v97_A          430 NVAVDRYADWVVVQEYAPPKTIDAHKARQRLFDIIAATISVLGIAPNKLVLKTRER---QKGKNQYQKLGEKGEFLEVTE  506 (703)
T ss_dssp             CEEEEEETTEEEEEECC-------CHHHHHHHHHHHHHHHHHTCCGGGEEEECCC---------------CCSCCEEEEE
T ss_pred             cEEEEEECCEEEEEeCCCccccchHHHHHHHHHHHHHHHHHhCCCcceeEEecccc---ccCcchhhccCCCCceEEEEE
Confidence            46789999999999743        244566778888877654 467888886532   111111112355555678899


Q ss_pred             CCeEEEEeccc-----eeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHH
Q psy16898        132 NGCTFKMDFSK-----VYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIR  205 (324)
Q Consensus       132 ~g~~f~id~~~-----~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~  205 (324)
                      +|++|.+|+..     +|++++   +.++++..+.+|++|||+|||+|.+++.+++.|+ +|+++|+|+.|++.|++|++
T Consensus       507 ~g~~~~v~~~~~~~tG~f~d~r---~~r~~l~~~~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~  583 (703)
T 3v97_A          507 YNAHLWVNLTDYLDTGLFLDHR---IARRMLGQMSKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLR  583 (703)
T ss_dssp             TTEEEEECSSSSSSCSCCGGGH---HHHHHHHHHCTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEEeccccccCCCcccHH---HHHHHHHHhcCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            99999999875     688887   6666666677899999999999999999999887 79999999999999999999


Q ss_pred             HhCCCCC-CCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH---------------HHHHHHh
Q psy16898        206 LNERQVK-TPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV---------------EYVRYLK  269 (324)
Q Consensus       206 ~n~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~---------------~~l~~~~  269 (324)
                      .|+  +. ++++++++|+.+++...                 ...||.|++|||.++.               .++..+.
T Consensus       584 ~ng--l~~~~v~~i~~D~~~~l~~~-----------------~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~  644 (703)
T 3v97_A          584 LNG--LTGRAHRLIQADCLAWLREA-----------------NEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLK  644 (703)
T ss_dssp             HTT--CCSTTEEEEESCHHHHHHHC-----------------CCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHH
T ss_pred             HcC--CCccceEEEecCHHHHHHhc-----------------CCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHH
Confidence            999  87 58999999999987642                 2459999999997531               1232222


Q ss_pred             c-cchhhcCCCCCCCEEEEEEcccCCChhHHhHhhhcCCCceEEEEeecccCCCCC
Q psy16898        270 V-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSYDPSYATLIRGIRRLSSDGP  324 (324)
Q Consensus       270 ~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~y~~~~~~~i~~~~~~~~d~~  324 (324)
                      . |++        ||++.+.|........ .+.+..+  +.....+....+++|||
T Consensus       645 ~~Lkp--------gG~L~~s~~~~~~~~~-~~~l~~~--g~~~~~i~~~~lp~df~  689 (703)
T 3v97_A          645 RLLRA--------GGTIMFSNNKRGFRMD-LDGLAKL--GLKAQEITQKTLSQDFA  689 (703)
T ss_dssp             HHEEE--------EEEEEEEECCTTCCCC-HHHHHHT--TEEEEECTTTTCCGGGT
T ss_pred             HhcCC--------CcEEEEEECCcccccC-HHHHHHc--CCceeeeeeccCCCCCC
Confidence            2 444        5888877666432222 2222222  34455666667777764

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.89  E-value=6.1e-22  Score=186.89  Aligned_cols=193  Identities=17%  Similarity=0.157  Sum_probs=139.2

Q ss_pred             EEEEeeccCCChHHHHHhccCCCCCCceeEEECCEEEEEeCc-hhhhhHHHHHHHHHhhCCCceEEEEcCCCCCcccccc
Q psy16898         36 AEVLLTYDNFSAEDILKAILPDNVAMSSFTSVGHIVHCNLRE-ELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNF  114 (324)
Q Consensus        36 ~~~~~~y~~~~~~~~l~~~~p~~~~~~~~d~~G~i~vi~~~~-~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~~~~  114 (324)
                      ..+-|.-+.|+...++..     +..-.+|+||++++++..+ .++.++..  +.++   ..+++|+.|.+...+     
T Consensus        33 ~~~~~~~~~~~~yrl~~~-----~pGl~~d~~g~~~vvq~~~~~~~~~~~~--~~~~---~~~~~i~~r~~~~eg-----   97 (332)
T 2igt_A           33 VPVILESSGAGDFHLIDS-----GNGLKLEQYGDYRVVRPEAQALWRPLVP--DRVW---QNADAIFTGDTDEDG-----   97 (332)
T ss_dssp             EEEEEEECCCTTEEEEEE-----ETTEEEEEETTEEEEEECTTCCSCCCSC--HHHH---HTCSEEEEECC---C-----
T ss_pred             CCeEEecCCCCeEEEEcC-----CCCEEEEEECCEEEEEECcHHHhhhhhh--hhhh---cCCcEEEEeCcccCC-----
Confidence            345667777776655543     2456789999999999865 34443311  2222   247899998643332     


Q ss_pred             eeeEEccC-CC-eEEEEEeCCeEEEEeccceee---cCcChHHHH-HHHhhc---cCCCEEEEEcCCCchhHHHHHhcCC
Q psy16898        115 QMELLAGK-DC-MVTMHKENGCTFKMDFSKVYW---NSRLSTEHE-RVTKEV---REGDLVLDVFAGVGPFSIPAARRGA  185 (324)
Q Consensus       115 ~~~~l~G~-~~-~~~~~~e~g~~f~id~~~~f~---~~r~~~e~~-~~~~~~---~~g~~VLDl~~G~G~~al~~a~~g~  185 (324)
                      ..++++|+ .+ ..+.+.|+|++|.+++..++.   .+. +.+.+ .+.+.+   .++.+|||+|||+|.+++.+++.|+
T Consensus        98 ~~~~~~g~~~~~~~~~i~e~g~~f~v~~~~~~~tg~f~d-q~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga  176 (332)
T 2igt_A           98 MGRWRFPKEALGETWPLSLLGVEFLGRFTAFRHVGVFPE-QIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA  176 (332)
T ss_dssp             CEEEECSSSCCCSEEEEEETTEEEEEECCSSSCCSCCGG-GHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC
T ss_pred             CcceEecCCCCCCceEEEECCEEEEEecCccccceechH-HHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCC
Confidence            23678884 33 567788999999999987543   222 22333 344444   4678999999999999999999989


Q ss_pred             EEEEEeCCHHHHHHHHHHHHHhCCCCCC-CeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        186 IVAANDLNPDSYAWLQASIRLNERQVKT-PISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       186 ~V~avD~~~~a~~~a~~N~~~n~~~l~~-~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      +|+++|+|+.|++.|++|++.|+  +.+ +++++++|+.+++......              ...||.|++|||+.
T Consensus       177 ~V~~VD~s~~al~~a~~n~~~~g--l~~~~v~~i~~D~~~~l~~~~~~--------------~~~fD~Ii~dPP~~  236 (332)
T 2igt_A          177 EVTHVDASKKAIGWAKENQVLAG--LEQAPIRWICEDAMKFIQREERR--------------GSTYDIILTDPPKF  236 (332)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHHT--CTTSCEEEECSCHHHHHHHHHHH--------------TCCBSEEEECCCSE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECcHHHHHHHHHhc--------------CCCceEEEECCccc
Confidence            99999999999999999999999  874 4999999999987653321              24599999999963

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.83  E-value=1.3e-20  Score=183.21  Aligned_cols=201  Identities=16%  Similarity=0.238  Sum_probs=151.4

Q ss_pred             eccCCChHHHHHhccCCCCCCceeEEECCEEEEEeC-chhhhhHHHHHHHHHhhCCCceEEEEcCCCC-CcccccceeeE
Q psy16898         41 TYDNFSAEDILKAILPDNVAMSSFTSVGHIVHCNLR-EELIEHKFIIGRVLLDKVPSCETVVNKAHTI-DNTYRNFQMEL  118 (324)
Q Consensus        41 ~y~~~~~~~~l~~~~p~~~~~~~~d~~G~i~vi~~~-~~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~-~~~~~~~~~~~  118 (324)
                      .|+..+..+.||+++    ++.+.. .|++++.... ...   .    +.| +.+|++++|+.+.+.. .+...+ ..++
T Consensus       182 ~y~~~~~~g~lr~~~----vr~~~~-~g~~~v~l~~~~~~---~----~~l-~~~~~~~~i~~~~~~~~~~~~~g-~~~~  247 (425)
T 2jjq_A          182 VWNIKKDEGFLRYMV----LREGKF-TEEVMVNFVTKEGN---L----PDP-TNYFDFDSIYWSVNRSKSDVSYG-DIER  247 (425)
T ss_dssp             BBBTTTTBCSEEEEE----EEECTT-TCCEEEEEEESSSC---C----CCC-TTTCCCSEEEEEECCSSSCCSCC-EEEE
T ss_pred             ccccccCCCcceEEE----EEEccC-CCCEEEEEEeCchh---H----HHH-hhcCCeeEEEEEcCCCCCceecc-eEEE
Confidence            467788889999988    665542 4777765432 221   1    112 3578899999875543 344455 7788


Q ss_pred             EccCCCeEEEEEeCCeEEEEeccceeecCcChHHHH--HHHhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHH
Q psy16898        119 LAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHE--RVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDS  196 (324)
Q Consensus       119 l~G~~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~--~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a  196 (324)
                      ++|++ + +....+|++|.+++..||+.++.++++.  .+++ +.++++|||+|||+|.+++.+|+.+.+|+|+|+|+.|
T Consensus       248 l~G~~-~-i~e~~~g~~f~~~~~~F~q~n~~~~e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~a  324 (425)
T 2jjq_A          248 FWGKE-F-IRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFA  324 (425)
T ss_dssp             EEECS-C-EEEEETTEEEEECTTSCCCSBHHHHHHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHH
T ss_pred             EECCC-e-EEEEECCEEEEEccccccccCHHHHHHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHH
Confidence            99986 3 3334699999999999999887666654  2334 6788999999999999999999998899999999999


Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh--HHHHHHHhccchh
Q psy16898        197 YAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA--VEYVRYLKVLTRE  274 (324)
Q Consensus       197 ~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a--~~~l~~~~~l~~~  274 (324)
                      ++.|++|++.|+  +.  ++++++|+.+++..                    .||.|++|||+..  ..+++.++.++++
T Consensus       325 i~~A~~n~~~ng--l~--v~~~~~d~~~~~~~--------------------~fD~Vv~dPPr~g~~~~~~~~l~~l~p~  380 (425)
T 2jjq_A          325 IEMARRNVEINN--VD--AEFEVASDREVSVK--------------------GFDTVIVDPPRAGLHPRLVKRLNREKPG  380 (425)
T ss_dssp             HHHHHHHHHHHT--CC--EEEEECCTTTCCCT--------------------TCSEEEECCCTTCSCHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHcC--Cc--EEEEECChHHcCcc--------------------CCCEEEEcCCccchHHHHHHHHHhcCCC
Confidence            999999999999  85  99999999875322                    3999999999742  3477777666654


Q ss_pred             hcCCCCCCCEEEEEEc
Q psy16898        275 EFGKLSRPPVLYLYCF  290 (324)
Q Consensus       275 ~~~~~~~~g~vh~y~f  290 (324)
                              +++.+.|.
T Consensus       381 --------givyvsc~  388 (425)
T 2jjq_A          381 --------VIVYVSCN  388 (425)
T ss_dssp             --------EEEEEESC
T ss_pred             --------cEEEEECC
Confidence                    77777764

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.77  E-value=7.1e-18  Score=161.10  Aligned_cols=179  Identities=16%  Similarity=0.157  Sum_probs=119.3

Q ss_pred             ECCEEEEEe-CchhhhhHHHHHHHHHhhCCC--c-eEEEEcCCCCCcccccceeeEEccCCCeEEEE-EeCC--eEEEEe
Q psy16898         67 VGHIVHCNL-REELIEHKFIIGRVLLDKVPS--C-ETVVNKAHTIDNTYRNFQMELLAGKDCMVTMH-KENG--CTFKMD  139 (324)
Q Consensus        67 ~G~i~vi~~-~~~~~~~~~~I~~~l~~~~~~--i-~~V~~k~~~~~~~~~~~~~~~l~G~~~~~~~~-~e~g--~~f~id  139 (324)
                      .|+++++.+ ...+....+.+++.+.+.++.  + ..++.+.         ...++++|++ +.... ..+|  +.|.++
T Consensus       118 ~g~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~---------~~~~~~~G~~-~i~e~~~~~g~~~~~~~~  187 (369)
T 3bt7_A          118 SNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRA---------TKTKIELDQD-YIDERLPVAGKEMIYRQV  187 (369)
T ss_dssp             TCEEEEEEEESSCCCHHHHHHHHHHHHHHHTTTCEEEEEEEE---------TTEEEESSCS-EEEEECCBTTBCCEEEEE
T ss_pred             CCcEEEEEEECCCCCHHHHHHHHHHHHhCcCCeeEEEEEeCC---------CceEEEcCCC-EEEEEeccCCceEEEEEC
Confidence            367777765 333334456667777665432  2 1223221         2346788875 32221 1278  788889


Q ss_pred             ccceeecCcChHHHHH--HHhhcc-CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeE
Q psy16898        140 FSKVYWNSRLSTEHER--VTKEVR-EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPIS  216 (324)
Q Consensus       140 ~~~~f~~~r~~~e~~~--~~~~~~-~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~  216 (324)
                      +..||+.+..+++...  +++.+. .+++|||+|||+|.|++.+|+.+.+|+|+|+|+.|++.|++|++.|+  +. +++
T Consensus       188 ~~~F~Q~n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng--~~-~v~  264 (369)
T 3bt7_A          188 ENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANH--ID-NVQ  264 (369)
T ss_dssp             TTSCCCSBHHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTT--CC-SEE
T ss_pred             CCCeecCCHHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcC--CC-ceE
Confidence            9999998886666542  344443 46799999999999999999977799999999999999999999999  86 899


Q ss_pred             EEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        217 ATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       217 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      ++++|+.+++.........+...  +.......||.|++|||+.
T Consensus       265 ~~~~d~~~~~~~~~~~~~~~~l~--~~~~~~~~fD~Vv~dPPr~  306 (369)
T 3bt7_A          265 IIRMAAEEFTQAMNGVREFNRLQ--GIDLKSYQCETIFVDPPRS  306 (369)
T ss_dssp             EECCCSHHHHHHHSSCCCCTTGG--GSCGGGCCEEEEEECCCTT
T ss_pred             EEECCHHHHHHHHhhcccccccc--ccccccCCCCEEEECcCcc
Confidence            99999998865431100000000  0000002599999999995

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.77  E-value=3.1e-18  Score=164.58  Aligned_cols=136  Identities=17%  Similarity=0.204  Sum_probs=109.5

Q ss_pred             EEEEeCCeEEEEec--------cceeecCcChHHHHHH---Hhhc----cCCCEEEEEcCCCchhHHHHHh--cCC-EEE
Q psy16898        127 TMHKENGCTFKMDF--------SKVYWNSRLSTEHERV---TKEV----REGDLVLDVFAGVGPFSIPAAR--RGA-IVA  188 (324)
Q Consensus       127 ~~~~e~g~~f~id~--------~~~f~~~r~~~e~~~~---~~~~----~~g~~VLDl~~G~G~~al~~a~--~g~-~V~  188 (324)
                      +.++|+|++|.++.        ..+||+++...+|..+   ++.+    .+|.+|||+|||+|.+|+.+|+  +|+ +|+
T Consensus         2 ~~i~E~g~~~~v~~~~~~~~~~~~~Ffn~~~~~nR~l~~~~~~~~~~~~~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~   81 (392)
T 3axs_A            2 EIVQEGIAKIIVPEIPKTVSSDMPVFYNPRMRVNRDLAVLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAY   81 (392)
T ss_dssp             EEEEETTEEEEECCCCSSCCTTCCSSCCGGGHHHHHHHHHHHHHHHHHHCSCEEEEESSCTTSHHHHHHHHHCSCEEEEE
T ss_pred             eEEEECCEEEEEecccccccCCCCEEEcCCcHHHHHHHHHHHHHHhhccCCCCEEEECCCcccHHHHHHHHhCCCCCEEE
Confidence            35789999999965        3578877766555543   2322    3588999999999999999998  464 999


Q ss_pred             EEeCCHHHHHHHHHHHHHhCCCCCCC-eEEEeccHHHHHH-HHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHH
Q psy16898        189 ANDLNPDSYAWLQASIRLNERQVKTP-ISATQKDARDFLQ-TDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVR  266 (324)
Q Consensus       189 avD~~~~a~~~a~~N~~~n~~~l~~~-v~~~~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~  266 (324)
                      ++|+|+.+++.+++|++.|+  +.++ ++++++|+.+++. ..                 ...||+|++|||.....+++
T Consensus        82 avDi~~~av~~~~~N~~~Ng--l~~~~v~v~~~Da~~~l~~~~-----------------~~~fD~V~lDP~g~~~~~l~  142 (392)
T 3axs_A           82 ANDISSKAIEIMKENFKLNN--IPEDRYEIHGMEANFFLRKEW-----------------GFGFDYVDLDPFGTPVPFIE  142 (392)
T ss_dssp             EECSCHHHHHHHHHHHHHTT--CCGGGEEEECSCHHHHHHSCC-----------------SSCEEEEEECCSSCCHHHHH
T ss_pred             EEECCHHHHHHHHHHHHHhC--CCCceEEEEeCCHHHHHHHhh-----------------CCCCcEEEECCCcCHHHHHH
Confidence            99999999999999999999  9755 9999999999876 42                 13599999999766667888


Q ss_pred             HHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        267 YLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       267 ~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                      .+.. ++++        |++++.|
T Consensus       143 ~a~~~Lk~g--------Gll~~t~  158 (392)
T 3axs_A          143 SVALSMKRG--------GILSLTA  158 (392)
T ss_dssp             HHHHHEEEE--------EEEEEEE
T ss_pred             HHHHHhCCC--------CEEEEEe
Confidence            8776 7765        8888877

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.73  E-value=3.7e-17  Score=156.67  Aligned_cols=134  Identities=19%  Similarity=0.248  Sum_probs=110.4

Q ss_pred             EEEEeCCeEEEEec------cceeecCcChHHHHH---HHhhccCCCEEEEEcCCCchhHHHHHhc-C-CEEEEEeCCHH
Q psy16898        127 TMHKENGCTFKMDF------SKVYWNSRLSTEHER---VTKEVREGDLVLDVFAGVGPFSIPAARR-G-AIVAANDLNPD  195 (324)
Q Consensus       127 ~~~~e~g~~f~id~------~~~f~~~r~~~e~~~---~~~~~~~g~~VLDl~~G~G~~al~~a~~-g-~~V~avD~~~~  195 (324)
                      +.++|++.+|.++.      ..+|++++...+|..   +++.. ++.+|||+|||+|.+++.+|++ + .+|+++|+|+.
T Consensus         4 ~~~~Eg~~~~~~p~~~~~~~~~~F~np~~~~nr~l~~~~l~~~-~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~   82 (378)
T 2dul_A            4 IEVQEGKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNIL-NPKIVLDALSATGIRGIRFALETPAEEVWLNDISED   82 (378)
T ss_dssp             EEEEETTEEEEEC--------CCCCCGGGHHHHHHHHHHHHHH-CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHH
T ss_pred             eEEEeCcEEEEecCccccCCCCceeCCchHHHHHHHHHHHHHc-CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHH
Confidence            45789999999976      268999988777765   33333 7889999999999999999986 4 49999999999


Q ss_pred             HHHHHHHHHHHh---------------CCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        196 SYAWLQASIRLN---------------ERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       196 a~~~a~~N~~~n---------------~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      +++.+++|++.|               +  +. +++++++|+.+++...                 ...||+|++|||..
T Consensus        83 av~~a~~N~~~n~~~~~~~~~~~~~~~g--l~-~i~v~~~Da~~~~~~~-----------------~~~fD~I~lDP~~~  142 (378)
T 2dul_A           83 AYELMKRNVMLNFDGELRESKGRAILKG--EK-TIVINHDDANRLMAER-----------------HRYFHFIDLDPFGS  142 (378)
T ss_dssp             HHHHHHHHHHHHCCSCCEECSSEEEEES--SS-EEEEEESCHHHHHHHS-----------------TTCEEEEEECCSSC
T ss_pred             HHHHHHHHHHHhcccccccccccccccC--CC-ceEEEcCcHHHHHHhc-----------------cCCCCEEEeCCCCC
Confidence            999999999999               8  76 4999999999887542                 13499999999987


Q ss_pred             hHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        261 AVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       261 a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                      +..+++++.. ++++        |++++.|
T Consensus       143 ~~~~l~~a~~~lk~g--------G~l~vt~  164 (378)
T 2dul_A          143 PMEFLDTALRSAKRR--------GILGVTA  164 (378)
T ss_dssp             CHHHHHHHHHHEEEE--------EEEEEEE
T ss_pred             HHHHHHHHHHhcCCC--------CEEEEEe
Confidence            7889998866 7765        7887766

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.67  E-value=2.7e-16  Score=153.28  Aligned_cols=147  Identities=19%  Similarity=0.273  Sum_probs=110.6

Q ss_pred             eeEEccCCCeEEEEEeCCeEEEEeccceeecCcChHHHH--HHHhhc--cCCCEEEEEcCCCchhHHHHHhcCCEEEEEe
Q psy16898        116 MELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHE--RVTKEV--REGDLVLDVFAGVGPFSIPAARRGAIVAAND  191 (324)
Q Consensus       116 ~~~l~G~~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~--~~~~~~--~~g~~VLDl~~G~G~~al~~a~~g~~V~avD  191 (324)
                      ...+.|....   +..+|++|.+++..||+.++..++..  .+++.+  .++.+|||+|||+|.+++.+|+.+++|+|+|
T Consensus       239 ~~~l~g~~~~---~~~~g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD  315 (433)
T 1uwv_A          239 LETVSGEMPW---YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE  315 (433)
T ss_dssp             CEEEECCCCE---EEETTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEE
T ss_pred             EEEEeCCCcE---EEECCEEEEECcccccccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEe
Confidence            3567787533   22789999999999998776555544  233433  4678999999999999999999988999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh-hHHHHHHHhc
Q psy16898        192 LNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV  270 (324)
Q Consensus       192 ~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~  270 (324)
                      +|+.|++.|++|++.|+  +. +++++++|+.+.+......              ...||.|++|||+. ..++++.+..
T Consensus       316 ~s~~al~~A~~n~~~~~--~~-~v~f~~~d~~~~l~~~~~~--------------~~~fD~Vv~dPPr~g~~~~~~~l~~  378 (433)
T 1uwv_A          316 GVPALVEKGQQNARLNG--LQ-NVTFYHENLEEDVTKQPWA--------------KNGFDKVLLDPARAGAAGVMQQIIK  378 (433)
T ss_dssp             SCHHHHHHHHHHHHHTT--CC-SEEEEECCTTSCCSSSGGG--------------TTCCSEEEECCCTTCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcC--CC-ceEEEECCHHHHhhhhhhh--------------cCCCCEEEECCCCccHHHHHHHHHh
Confidence            99999999999999999  87 8999999998754321000              13599999999996 3345555554


Q ss_pred             cchhhcCCCCCCCEEEEEEc
Q psy16898        271 LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       271 l~~~~~~~~~~~g~vh~y~f  290 (324)
                      +++        +.++++.|-
T Consensus       379 ~~p--------~~ivyvsc~  390 (433)
T 1uwv_A          379 LEP--------IRIVYVSCN  390 (433)
T ss_dssp             HCC--------SEEEEEESC
T ss_pred             cCC--------CeEEEEECC
Confidence            444        356666553

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.61  E-value=1.7e-14  Score=124.01  Aligned_cols=112  Identities=20%  Similarity=0.194  Sum_probs=85.3

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .++.+|||+|||+|.+++.++++++ +|+|+|+|+.+++.|++|++.++  +. +++++++|+.+++....         
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~-~v~~~~~d~~~~~~~~~---------  110 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALG--LS-GATLRRGAVAAVVAAGT---------  110 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHT--CS-CEEEEESCHHHHHHHCC---------
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC--CC-ceEEEEccHHHHHhhcc---------
Confidence            5788999999999999998888776 89999999999999999999999  84 89999999998765321         


Q ss_pred             cCCCCCCCCcccEEEECChhhh--HHHHHHHhccchhhcCCCCCCCEEEEEEcccC
Q psy16898        240 SEGNSTGGTAVARVIMNLPATA--VEYVRYLKVLTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a--~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                             ...||.|++|||...  ....+.+..+...  ..++++|++.+.+....
T Consensus       111 -------~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~--~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          111 -------TSPVDLVLADPPYNVDSADVDAILAALGTN--GWTREGTVAVVERATTC  157 (189)
T ss_dssp             -------SSCCSEEEECCCTTSCHHHHHHHHHHHHHS--SSCCTTCEEEEEEETTS
T ss_pred             -------CCCccEEEECCCCCcchhhHHHHHHHHHhc--CccCCCeEEEEEecCCC
Confidence                   145999999999864  2222222222221  13556788877665544

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.58  E-value=3.8e-14  Score=121.08  Aligned_cols=108  Identities=14%  Similarity=0.091  Sum_probs=82.5

Q ss_pred             hhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        158 KEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       158 ~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      ..+.+|.+|||+|||+|.+++.+++.+++|+|+|+|+.|++.|++|++.++  +. +++++++|+.++....        
T Consensus        18 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~-~v~~~~~~~~~l~~~~--------   86 (185)
T 3mti_A           18 EVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLG--IE-NTELILDGHENLDHYV--------   86 (185)
T ss_dssp             TTCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHT--CC-CEEEEESCGGGGGGTC--------
T ss_pred             HhCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcC--CC-cEEEEeCcHHHHHhhc--------
Confidence            346789999999999999999999998899999999999999999999999  84 8999998876532211        


Q ss_pred             cccCCCCCCCCcccEEEECChh-------------hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPA-------------TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~-------------~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                               ...||.|++|++.             ....++..+.. |+++        |.+.+.+|...
T Consensus        87 ---------~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~~~~  139 (185)
T 3mti_A           87 ---------REPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVG--------GRLAIMIYYGH  139 (185)
T ss_dssp             ---------CSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEE--------EEEEEEEC---
T ss_pred             ---------cCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCC--------cEEEEEEeCCC
Confidence                     2359999999543             22344455544 6665        88888777654

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.56  E-value=1.3e-14  Score=128.37  Aligned_cols=93  Identities=11%  Similarity=0.158  Sum_probs=73.5

Q ss_pred             CcChHHHHHHHhhccCCCEEEEEcCC-CchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        147 SRLSTEHERVTKEVREGDLVLDVFAG-VGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       147 ~r~~~e~~~~~~~~~~g~~VLDl~~G-~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      ++..++...+...+.++.+|||+||| +|.+++.+++. +++|+|+|+|+.+++.|++|+..++  +  +++++++|+..
T Consensus        40 p~~~~~~l~~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~--~v~~~~~d~~~  115 (230)
T 3evz_A           40 TTPISRYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNN--S--NVRLVKSNGGI  115 (230)
T ss_dssp             CCHHHHHHHHHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTT--C--CCEEEECSSCS
T ss_pred             CCCchhhhHhHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhC--C--CcEEEeCCchh
Confidence            44333333233456789999999999 99999999998 7899999999999999999999999  7  69999999743


Q ss_pred             HHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        225 FLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      +..-                 ....||.|++|||+.
T Consensus       116 ~~~~-----------------~~~~fD~I~~npp~~  134 (230)
T 3evz_A          116 IKGV-----------------VEGTFDVIFSAPPYY  134 (230)
T ss_dssp             STTT-----------------CCSCEEEEEECCCCC
T ss_pred             hhhc-----------------ccCceeEEEECCCCc
Confidence            2110                 014599999999974

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.55  E-value=3e-14  Score=131.25  Aligned_cols=107  Identities=17%  Similarity=0.162  Sum_probs=85.8

Q ss_pred             eCCeEEEEeccceeecCcChHHHH--HHHhhc--cCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHH
Q psy16898        131 ENGCTFKMDFSKVYWNSRLSTEHE--RVTKEV--REGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIR  205 (324)
Q Consensus       131 e~g~~f~id~~~~f~~~r~~~e~~--~~~~~~--~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~  205 (324)
                      -.|..|.++...+.  +|..+|..  .+++.+  .++.+|||+|||+|.+++.+++. +++|+|+|+|+.+++.|++|++
T Consensus        90 f~~~~~~v~~~~li--pr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~  167 (284)
T 1nv8_A           90 FMGLSFLVEEGVFV--PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAE  167 (284)
T ss_dssp             ETTEEEECCTTSCC--CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHH
T ss_pred             ECCeEEEeCCCcee--cChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence            36778888876543  55555554  234433  36789999999999999999987 7799999999999999999999


Q ss_pred             HhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcc---cEEEECChhhh
Q psy16898        206 LNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAV---ARVIMNLPATA  261 (324)
Q Consensus       206 ~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~f---D~Vi~npP~~a  261 (324)
                      .++  +.++++++++|+.+.+..                    .|   |.|++|||+..
T Consensus       168 ~~~--l~~~v~~~~~D~~~~~~~--------------------~f~~~D~IvsnPPyi~  204 (284)
T 1nv8_A          168 RHG--VSDRFFVRKGEFLEPFKE--------------------KFASIEMILSNPPYVK  204 (284)
T ss_dssp             HTT--CTTSEEEEESSTTGGGGG--------------------GTTTCCEEEECCCCBC
T ss_pred             HcC--CCCceEEEECcchhhccc--------------------ccCCCCEEEEcCCCCC
Confidence            999  876799999999874321                    27   99999999853

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.55  E-value=2.7e-14  Score=129.28  Aligned_cols=84  Identities=14%  Similarity=0.183  Sum_probs=71.9

Q ss_pred             cc-CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VR-EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~-~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +. ++.+|||+|||+|.+++.+++++. +|+|+|+++.+++.|++|+..|+  +.++++++++|+.++.....       
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~--~~~~v~~~~~D~~~~~~~~~-------  116 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQ--LEDQIEIIEYDLKKITDLIP-------  116 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTT--CTTTEEEECSCGGGGGGTSC-------
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCC--CcccEEEEECcHHHhhhhhc-------
Confidence            44 788999999999999999999866 99999999999999999999999  88789999999988653210       


Q ss_pred             cccCCCCCCCCcccEEEECChhhh
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                               ...||+|++|||+..
T Consensus       117 ---------~~~fD~Ii~npPy~~  131 (259)
T 3lpm_A          117 ---------KERADIVTCNPPYFA  131 (259)
T ss_dssp             ---------TTCEEEEEECCCC--
T ss_pred             ---------cCCccEEEECCCCCC
Confidence                     145999999999753

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.54  E-value=1.3e-13  Score=115.67  Aligned_cols=108  Identities=18%  Similarity=0.162  Sum_probs=85.3

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      ++.+|||+|||+|.+++.+++.+..|+|+|+|+.+++.|++|+..++  +  +++++++|+.+++......         
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~--~~~~~~~d~~~~~~~~~~~---------  107 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTG--L--GARVVALPVEVFLPEAKAQ---------  107 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHT--C--CCEEECSCHHHHHHHHHHT---------
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcC--C--ceEEEeccHHHHHHhhhcc---------
Confidence            78899999999999999999998899999999999999999999998  7  6999999999876543221         


Q ss_pred             CCCCCCCcccEEEECChhh--hHHHHHHHh--c-cchhhcCCCCCCCEEEEEEcccCCC
Q psy16898        242 GNSTGGTAVARVIMNLPAT--AVEYVRYLK--V-LTREEFGKLSRPPVLYLYCFLPKMD  295 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~npP~~--a~~~l~~~~--~-l~~~~~~~~~~~g~vh~y~f~~~~~  295 (324)
                           ...||.|++|||..  ..++++.+.  . |++        +|.+.+.+......
T Consensus       108 -----~~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~--------gG~~~~~~~~~~~~  153 (171)
T 1ws6_A          108 -----GERFTVAFMAPPYAMDLAALFGELLASGLVEA--------GGLYVLQHPKDLYL  153 (171)
T ss_dssp             -----TCCEEEEEECCCTTSCTTHHHHHHHHHTCEEE--------EEEEEEEEETTSCC
T ss_pred             -----CCceEEEEECCCCchhHHHHHHHHHhhcccCC--------CcEEEEEeCCccCC
Confidence                 13599999999863  223444444  3 554        48887776665543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.54  E-value=9.8e-14  Score=117.69  Aligned_cols=111  Identities=21%  Similarity=0.229  Sum_probs=85.0

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      ..++.+|||+|||+|.+++.+++.+. +|+|+|+|+.+++.|++|++.++  +.++++++++|+.+++...         
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~---------   97 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTK--AENRFTLLKMEAERAIDCL---------   97 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTT--CGGGEEEECSCHHHHHHHB---------
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECcHHHhHHhh---------
Confidence            34788999999999999999999864 99999999999999999999998  8668999999999865431         


Q ss_pred             ccCCCCCCCCcccEEEECChhhh---HHHHHHHhccchhhcCCCCCCCEEEEEEcccCC
Q psy16898        239 QSEGNSTGGTAVARVIMNLPATA---VEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKM  294 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~a---~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~  294 (324)
                              ...||.|++|||...   .+++..+..     ...++++|++.+.+.....
T Consensus        98 --------~~~fD~i~~~~~~~~~~~~~~~~~l~~-----~~~L~~gG~l~~~~~~~~~  143 (177)
T 2esr_A           98 --------TGRFDLVFLDPPYAKETIVATIEALAA-----KNLLSEQVMVVCETDKTVL  143 (177)
T ss_dssp             --------CSCEEEEEECCSSHHHHHHHHHHHHHH-----TTCEEEEEEEEEEEETTCC
T ss_pred             --------cCCCCEEEECCCCCcchHHHHHHHHHh-----CCCcCCCcEEEEEECCccc
Confidence                    134999999999632   233444430     1123345888877766553

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.53  E-value=9.6e-14  Score=118.23  Aligned_cols=109  Identities=18%  Similarity=0.238  Sum_probs=84.3

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .++.+|||+|||+|.+++.+++.+. +|+|+|+|+.+++.|++|+..++  +.++++++++|+.++.......       
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~-------  113 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITK--EPEKFEVRKMDANRALEQFYEE-------  113 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHHHHHHHT-------
T ss_pred             cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhC--CCcceEEEECcHHHHHHHHHhc-------
Confidence            4788999999999999999988774 99999999999999999999998  8668999999999876543211       


Q ss_pred             cCCCCCCCCcccEEEECChhh---hHHHHHHH--hc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        240 SEGNSTGGTAVARVIMNLPAT---AVEYVRYL--KV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~---a~~~l~~~--~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                             ...||.|++|||..   ....+..+  .. |++        +|++.+.+....
T Consensus       114 -------~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~--------gG~l~~~~~~~~  158 (187)
T 2fhp_A          114 -------KLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTN--------EAVIVCETDKTV  158 (187)
T ss_dssp             -------TCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEE--------EEEEEEEEETTC
T ss_pred             -------CCCCCEEEECCCCCchhHHHHHHHHHHhcccCC--------CCEEEEEeCCcc
Confidence                   13599999999953   23344444  22 454        477776655544

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.52  E-value=9.1e-14  Score=121.30  Aligned_cols=104  Identities=20%  Similarity=0.248  Sum_probs=82.3

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      ++.+|||+|||+|.+++.++++++ +|+|+|+|+.+++.|++|++.++  +. +++++++|+.+++...           
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~--~~-~v~~~~~D~~~~~~~~-----------  119 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLK--AG-NARVVNSNAMSFLAQK-----------  119 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT--CC-SEEEECSCHHHHHSSC-----------
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcC--CC-cEEEEECCHHHHHhhc-----------
Confidence            688999999999999999888776 99999999999999999999999  84 8999999998865421           


Q ss_pred             CCCCCCCCcccEEEECChhh---hHHHHHHHhc---cchhhcCCCCCCCEEEEEEcccC
Q psy16898        241 EGNSTGGTAVARVIMNLPAT---AVEYVRYLKV---LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP~~---a~~~l~~~~~---l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                            ...||.|++|||..   ...++..+..   |++        +|++.+.+....
T Consensus       120 ------~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~p--------gG~l~i~~~~~~  164 (202)
T 2fpo_A          120 ------GTPHNIVFVDPPFRRGLLEETINLLEDNGWLAD--------EALIYVESEVEN  164 (202)
T ss_dssp             ------CCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEE--------EEEEEEEEEGGG
T ss_pred             ------CCCCCEEEECCCCCCCcHHHHHHHHHhcCccCC--------CcEEEEEECCCc
Confidence                  23599999999942   2234444432   444        488877666554

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.51  E-value=2.8e-13  Score=115.37  Aligned_cols=145  Identities=18%  Similarity=0.230  Sum_probs=105.6

Q ss_pred             eCCeEEEEeccc-eeecCcChHHHHHHHhhc--cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh
Q psy16898        131 ENGCTFKMDFSK-VYWNSRLSTEHERVTKEV--REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLN  207 (324)
Q Consensus       131 e~g~~f~id~~~-~f~~~r~~~e~~~~~~~~--~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n  207 (324)
                      -.|..+.++... +|..+........+++.+  .++.+|||+|||+|.+++.+++.+.+|+|+|+|+.+++.+++|+..+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~   97 (194)
T 1dus_A           18 LRGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLN   97 (194)
T ss_dssp             ETTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             cCCCceEEEeCCCcCCccccchHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHc
Confidence            366677765443 454443333444555554  47889999999999999999999889999999999999999999998


Q ss_pred             CCCCCC-CeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh-----HHHHHHHhc-cchhhcCCCC
Q psy16898        208 ERQVKT-PISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA-----VEYVRYLKV-LTREEFGKLS  280 (324)
Q Consensus       208 ~~~l~~-~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a-----~~~l~~~~~-l~~~~~~~~~  280 (324)
                      +  +.+ +++++++|+.+...                   ...||.|++|+|...     ..++..+.. ++++      
T Consensus        98 ~--~~~~~~~~~~~d~~~~~~-------------------~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~g------  150 (194)
T 1dus_A           98 N--LDNYDIRVVHSDLYENVK-------------------DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN------  150 (194)
T ss_dssp             T--CTTSCEEEEECSTTTTCT-------------------TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE------
T ss_pred             C--CCccceEEEECchhcccc-------------------cCCceEEEECCCcccchhHHHHHHHHHHHHcCCC------
Confidence            8  763 39999999876322                   135999999998532     345555555 6664      


Q ss_pred             CCCEEEEEEcccCCChhHHhHhhh
Q psy16898        281 RPPVLYLYCFLPKMDLETKKKIKS  304 (324)
Q Consensus       281 ~~g~vh~y~f~~~~~~~~~~~v~~  304 (324)
                        |.+.+.+..........+.++.
T Consensus       151 --G~l~~~~~~~~~~~~~~~~l~~  172 (194)
T 1dus_A          151 --GEIWVVIQTKQGAKSLAKYMKD  172 (194)
T ss_dssp             --EEEEEEEESTHHHHHHHHHHHH
T ss_pred             --CEEEEEECCCCChHHHHHHHHH
Confidence              8888888776554445555443

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.51  E-value=2.3e-13  Score=123.17  Aligned_cols=142  Identities=17%  Similarity=0.167  Sum_probs=103.3

Q ss_pred             eCCeEEEEeccceeecCcChHHHHH--HH-hhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh
Q psy16898        131 ENGCTFKMDFSKVYWNSRLSTEHER--VT-KEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLN  207 (324)
Q Consensus       131 e~g~~f~id~~~~f~~~r~~~e~~~--~~-~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n  207 (324)
                      .+++.+.+++..+|......+.+..  .+ ..+.++.+|||+|||+|.+++.+++.|++|+|+|+++.+++.+++|+..|
T Consensus        86 ~~~~~~~l~p~~~fgtg~~~tt~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~  165 (254)
T 2nxc_A           86 GAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRN  165 (254)
T ss_dssp             SSSEEEECCCC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHT
T ss_pred             CCceEEEECCCccccCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHc
Confidence            3566778888887766555544432  22 23568899999999999999999998889999999999999999999999


Q ss_pred             CCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh-HHHHHHHhc-cchhhcCCCCCCCEE
Q psy16898        208 ERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA-VEYVRYLKV-LTREEFGKLSRPPVL  285 (324)
Q Consensus       208 ~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a-~~~l~~~~~-l~~~~~~~~~~~g~v  285 (324)
                      +  +.  ++++++|+.+.+..                   ..||.|++|++... ..++..+.. ++++        |.+
T Consensus       166 ~--~~--v~~~~~d~~~~~~~-------------------~~fD~Vv~n~~~~~~~~~l~~~~~~Lkpg--------G~l  214 (254)
T 2nxc_A          166 G--VR--PRFLEGSLEAALPF-------------------GPFDLLVANLYAELHAALAPRYREALVPG--------GRA  214 (254)
T ss_dssp             T--CC--CEEEESCHHHHGGG-------------------CCEEEEEEECCHHHHHHHHHHHHHHEEEE--------EEE
T ss_pred             C--Cc--EEEEECChhhcCcC-------------------CCCCEEEECCcHHHHHHHHHHHHHHcCCC--------CEE
Confidence            9  75  89999998874211                   34999999987643 346666655 6665        888


Q ss_pred             EEEEcccCCChhHHhHhh
Q psy16898        286 YLYCFLPKMDLETKKKIK  303 (324)
Q Consensus       286 h~y~f~~~~~~~~~~~v~  303 (324)
                      .+.++.........+.++
T Consensus       215 ils~~~~~~~~~v~~~l~  232 (254)
T 2nxc_A          215 LLTGILKDRAPLVREAMA  232 (254)
T ss_dssp             EEEEEEGGGHHHHHHHHH
T ss_pred             EEEeeccCCHHHHHHHHH
Confidence            887777665554444443

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.51  E-value=5.4e-14  Score=122.64  Aligned_cols=106  Identities=21%  Similarity=0.249  Sum_probs=82.4

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCC-CCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVK-TPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      ++.+|||+|||+|.+++.++++++ +|+|+|+|+.+++.|++|++.++  +. ++++++++|+.+++...          
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~d~~~~~~~~----------  120 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLK--CSSEQAEVINQSSLDFLKQP----------  120 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT--CCTTTEEEECSCHHHHTTSC----------
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhC--CCccceEEEECCHHHHHHhh----------
Confidence            688999999999999999888775 99999999999999999999999  83 48999999998764321          


Q ss_pred             cCCCCCCCCc-ccEEEECChhh---hHHHHHHHh--c-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        240 SEGNSTGGTA-VARVIMNLPAT---AVEYVRYLK--V-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       240 ~~~~~~~~~~-fD~Vi~npP~~---a~~~l~~~~--~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                            .... ||.|++|||..   ...++..+.  . |++        +|.+.+.+....
T Consensus       121 ------~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~Lkp--------gG~l~i~~~~~~  167 (201)
T 2ift_A          121 ------QNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKP--------NALIYVETEKDK  167 (201)
T ss_dssp             ------CSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEE--------EEEEEEEEESSS
T ss_pred             ------ccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCC--------CcEEEEEECCCC
Confidence                  0246 99999999942   223454442  2 454        488777666554

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.51  E-value=2.1e-13  Score=117.60  Aligned_cols=110  Identities=15%  Similarity=0.127  Sum_probs=87.5

Q ss_pred             HhhccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHh
Q psy16898        157 TKEVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAH  233 (324)
Q Consensus       157 ~~~~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~  233 (324)
                      ...+.++.+|||+|||+|.+++.+++.   +++|+|+|+|+.+++.|++|++.++  +.++++++++|+.++....    
T Consensus        17 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~----   90 (197)
T 3eey_A           17 KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN--LIDRVTLIKDGHQNMDKYI----   90 (197)
T ss_dssp             HHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT--CGGGEEEECSCGGGGGGTC----
T ss_pred             HhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCeEEEECCHHHHhhhc----
Confidence            345778999999999999999999985   2599999999999999999999998  8568999999987754211    


Q ss_pred             hhhhcccCCCCCCCCcccEEEECChhh-------------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        234 LVRWSQSEGNSTGGTAVARVIMNLPAT-------------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       234 ~~~~~~~~~~~~~~~~fD~Vi~npP~~-------------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                                   ...||.|++|+|..             ...++..+.. |+++        |++.+.++...
T Consensus        91 -------------~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g--------G~l~~~~~~~~  143 (197)
T 3eey_A           91 -------------DCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTG--------GIITVVIYYGG  143 (197)
T ss_dssp             -------------CSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEE--------EEEEEEECCBT
T ss_pred             -------------cCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCC--------CEEEEEEccCC
Confidence                         24599999999762             2456666665 7765        88887776653

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.51  E-value=1.1e-13  Score=121.20  Aligned_cols=118  Identities=15%  Similarity=0.088  Sum_probs=94.0

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +.++.+|||+|||+|.+++.+|+.+++|+|+|+|+.+++.|++|++.++  ++++++++++|+.+.+..           
T Consensus        53 ~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~~~~-----------  119 (204)
T 3njr_A           53 PRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYG--LSPRMRAVQGTAPAALAD-----------  119 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCTTGGGTT-----------
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCEEEEeCchhhhccc-----------
Confidence            4678999999999999999999998899999999999999999999999  876899999999874332           


Q ss_pred             cCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhHhhhcC
Q psy16898        240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSYD  306 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~y~  306 (324)
                             ...||.|+++...... +++.+.. |++        +|.+.+.++.........+.++.+.
T Consensus       120 -------~~~~D~v~~~~~~~~~-~l~~~~~~Lkp--------gG~lv~~~~~~~~~~~~~~~l~~~g  171 (204)
T 3njr_A          120 -------LPLPEAVFIGGGGSQA-LYDRLWEWLAP--------GTRIVANAVTLESETLLTQLHARHG  171 (204)
T ss_dssp             -------SCCCSEEEECSCCCHH-HHHHHHHHSCT--------TCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred             -------CCCCCEEEECCcccHH-HHHHHHHhcCC--------CcEEEEEecCcccHHHHHHHHHhCC
Confidence                   1249999999744333 6666655 665        4898888877665555566665544

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.50  E-value=4.6e-13  Score=113.14  Aligned_cols=116  Identities=15%  Similarity=0.163  Sum_probs=89.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +.++.+|||+|||+|.+++.+++.+.+|+|+|+|+.+++.+++|++.++  ++ +++++++|+.+.+..           
T Consensus        33 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~-~~~~~~~d~~~~~~~-----------   98 (183)
T 2yxd_A           33 LNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFN--IK-NCQIIKGRAEDVLDK-----------   98 (183)
T ss_dssp             CCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTT--CC-SEEEEESCHHHHGGG-----------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcC--CC-cEEEEECCccccccC-----------
Confidence            4578899999999999999999977799999999999999999999998  85 799999999873221           


Q ss_pred             cCCCCCCCCcccEEEECChhhhHHHHHHHhccchhhcCCCCCCCEEEEEEcccCCChhHHhHhhhcC
Q psy16898        240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSYD  306 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~y~  306 (324)
                              ..||.|++++|.....++..+..+ +        +|.+.+..+.........+.++.+.
T Consensus        99 --------~~~D~i~~~~~~~~~~~l~~~~~~-~--------gG~l~~~~~~~~~~~~~~~~l~~~g  148 (183)
T 2yxd_A           99 --------LEFNKAFIGGTKNIEKIIEILDKK-K--------INHIVANTIVLENAAKIINEFESRG  148 (183)
T ss_dssp             --------CCCSEEEECSCSCHHHHHHHHHHT-T--------CCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             --------CCCcEEEECCcccHHHHHHHHhhC-C--------CCEEEEEecccccHHHHHHHHHHcC
Confidence                    249999999984344566655544 3        5888877766554444555555443

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.48  E-value=4.1e-14  Score=128.68  Aligned_cols=85  Identities=18%  Similarity=0.114  Sum_probs=72.2

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCH-------HHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNP-------DSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA  232 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~-------~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~  232 (324)
                      ..++.+|||+|||+|.+++.+|+.|++|+|+|+|+       .+++.|++|++.|+  +.++++++++|+.+++......
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~--~~~ri~~~~~d~~~~l~~~~~~  158 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQD--TAARINLHFGNAAEQMPALVKT  158 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHH--HHTTEEEEESCHHHHHHHHHHH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhC--CccCeEEEECCHHHHHHhhhcc
Confidence            34678999999999999999999999999999999       99999999999998  8656999999999987643220


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                    +..||+|++|||..
T Consensus       159 --------------~~~fD~V~~dP~~~  172 (258)
T 2r6z_A          159 --------------QGKPDIVYLDPMYP  172 (258)
T ss_dssp             --------------HCCCSEEEECCCC-
T ss_pred             --------------CCCccEEEECCCCC
Confidence                          02499999999763

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.48  E-value=4.8e-13  Score=122.31  Aligned_cols=85  Identities=18%  Similarity=0.268  Sum_probs=71.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh--cC-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR--RG-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~--~g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.+|.+|||+|||+|.+++.+++  .+ .+|+|+|+++.+++.+++|++.++  +. +++++++|+.++.......    
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g--~~-~v~~~~~D~~~~~~~~~~~----  153 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMG--VL-NTIIINADMRKYKDYLLKN----  153 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTT--CC-SEEEEESCHHHHHHHHHHT----
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhC--CC-cEEEEeCChHhcchhhhhc----
Confidence            56889999999999999999998  45 699999999999999999999999  87 8999999999875432110    


Q ss_pred             hcccCCCCCCCCcccEEEECChhhh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                                ...||.|++|||.+.
T Consensus       154 ----------~~~fD~Vl~d~Pcs~  168 (274)
T 3ajd_A          154 ----------EIFFDKILLDAPCSG  168 (274)
T ss_dssp             ----------TCCEEEEEEEECCC-
T ss_pred             ----------cccCCEEEEcCCCCC
Confidence                      135999999999854

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.46  E-value=4.6e-14  Score=122.47  Aligned_cols=83  Identities=24%  Similarity=0.276  Sum_probs=52.3

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .++.+|||+|||+|.+++.+++.  +++|+|+|+|+.+++.|++|+..++  +  +++++++|+.+........      
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~--~~~~~~~d~~~~~~~~~~~------   98 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG--A--VVDWAAADGIEWLIERAER------   98 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-----------------------CCHHHHHHHHHHHHHT------
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC--C--ceEEEEcchHhhhhhhhhc------
Confidence            67889999999999999999997  5599999999999999999999988  6  6899999998854432111      


Q ss_pred             ccCCCCCCCCcccEEEECChhhh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                              ...||.|++|||+..
T Consensus        99 --------~~~fD~i~~npp~~~  113 (215)
T 4dzr_A           99 --------GRPWHAIVSNPPYIP  113 (215)
T ss_dssp             --------TCCBSEEEECCCCCC
T ss_pred             --------cCcccEEEECCCCCC
Confidence                    245999999999853

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.46  E-value=3.2e-13  Score=129.47  Aligned_cols=131  Identities=22%  Similarity=0.212  Sum_probs=95.6

Q ss_pred             CCeEEEEeccceeecCcChHHHHHHHh----hc----cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHH
Q psy16898        132 NGCTFKMDFSKVYWNSRLSTEHERVTK----EV----REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQAS  203 (324)
Q Consensus       132 ~g~~f~id~~~~f~~~r~~~e~~~~~~----~~----~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N  203 (324)
                      .++.|..++..|++... ......+++    .+    .++.+|||+|||+|.+++.+++.+++|+++|+|+.+++.|++|
T Consensus       196 ~~~~~~~~pgvFs~~~~-d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n  274 (381)
T 3dmg_A          196 AEYTFHHLPGVFSAGKV-DPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKG  274 (381)
T ss_dssp             EEEEEEECTTCTTTTSC-CHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHH
T ss_pred             ceEEEEeCCCceeCCCC-CHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHH
Confidence            34566666665554322 212222222    22    2688999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh---------HHHHHHHhc-cch
Q psy16898        204 IRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA---------VEYVRYLKV-LTR  273 (324)
Q Consensus       204 ~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a---------~~~l~~~~~-l~~  273 (324)
                      +..|+  +.  ++++++|+.+....                  ...||.|++|||...         ..++..+.. |++
T Consensus       275 ~~~~~--~~--v~~~~~D~~~~~~~------------------~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~Lkp  332 (381)
T 3dmg_A          275 LEANA--LK--AQALHSDVDEALTE------------------EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRP  332 (381)
T ss_dssp             HHHTT--CC--CEEEECSTTTTSCT------------------TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEE
T ss_pred             HHHcC--CC--eEEEEcchhhcccc------------------CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCc
Confidence            99999  75  89999999875432                  135999999998753         245665555 676


Q ss_pred             hhcCCCCCCCEEEEEEcccC
Q psy16898        274 EEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       274 ~~~~~~~~~g~vh~y~f~~~  293 (324)
                      +        |.+.+.+....
T Consensus       333 G--------G~l~iv~n~~l  344 (381)
T 3dmg_A          333 G--------GVFFLVSNPFL  344 (381)
T ss_dssp             E--------EEEEEEECTTS
T ss_pred             C--------cEEEEEEcCCC
Confidence            5        88877665544

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.44  E-value=6.1e-13  Score=121.43  Aligned_cols=105  Identities=21%  Similarity=0.209  Sum_probs=82.0

Q ss_pred             CCeEEEEeccceeecCcChHHHH--HHHhhc-cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHH
Q psy16898        132 NGCTFKMDFSKVYWNSRLSTEHE--RVTKEV-REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRL  206 (324)
Q Consensus       132 ~g~~f~id~~~~f~~~r~~~e~~--~~~~~~-~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~  206 (324)
                      .|..|.++...+.  ++..+|..  .+++.+ .++.+|||+|||+|.+++.+++.  +++|+|+|+|+.+++.|++|++.
T Consensus        78 ~~~~~~~~~~~~i--pr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~  155 (276)
T 2b3t_A           78 WSLPLFVSPATLI--PRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQH  155 (276)
T ss_dssp             TTEEEECCTTSCC--CCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHH
T ss_pred             CCceEEeCCCCcc--cCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            5667777665443  44444443  244444 56789999999999999999974  66999999999999999999999


Q ss_pred             hCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        207 NERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       207 n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      ++  ++ +++++++|+.+...                   ...||.|++|||+.
T Consensus       156 ~~--~~-~v~~~~~d~~~~~~-------------------~~~fD~Iv~npPy~  187 (276)
T 2b3t_A          156 LA--IK-NIHILQSDWFSALA-------------------GQQFAMIVSNPPYI  187 (276)
T ss_dssp             HT--CC-SEEEECCSTTGGGT-------------------TCCEEEEEECCCCB
T ss_pred             cC--CC-ceEEEEcchhhhcc-------------------cCCccEEEECCCCC
Confidence            99  87 79999999876421                   13599999999984

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.43  E-value=1.1e-12  Score=124.08  Aligned_cols=80  Identities=28%  Similarity=0.314  Sum_probs=70.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ..++.+|||+|||+|++++.+|..+   .+|+|+|+|+.+++.|++|++.++  +. ++++.++|+.++...        
T Consensus       201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g--~~-~i~~~~~D~~~~~~~--------  269 (354)
T 3tma_A          201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG--LS-WIRFLRADARHLPRF--------  269 (354)
T ss_dssp             CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT--CT-TCEEEECCGGGGGGT--------
T ss_pred             CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC--CC-ceEEEeCChhhCccc--------
Confidence            4578899999999999999999964   799999999999999999999999  87 899999999886432        


Q ss_pred             hcccCCCCCCCCcccEEEECChhh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                ...||+|++|||+.
T Consensus       270 ----------~~~~D~Ii~npPyg  283 (354)
T 3tma_A          270 ----------FPEVDRILANPPHG  283 (354)
T ss_dssp             ----------CCCCSEEEECCCSC
T ss_pred             ----------cCCCCEEEECCCCc
Confidence                      12489999999984

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.42  E-value=6.4e-12  Score=110.72  Aligned_cols=126  Identities=17%  Similarity=0.152  Sum_probs=91.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ..++.+|||+|||+|.+++.+|+.   +++|+++|+++.+++.|++|++.++  +.++++++++|+.+++......    
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~l~~~~~~----  129 (221)
T 3u81_A           56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG--LQDKVTILNGASQDLIPQLKKK----  129 (221)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHGGGTTTT----
T ss_pred             hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC--CCCceEEEECCHHHHHHHHHHh----
Confidence            347889999999999999999983   6799999999999999999999999  8778999999998876543110    


Q ss_pred             hcccCCCCCCCCcccEEEECChhhhH-HHHHHHhccchhhcCCCCCCCEEEEEEcccCCChhHHhHhhh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATAV-EYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKS  304 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a~-~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~  304 (324)
                              .....||.|++|.+.... ..++.+..+     ..+++||++.+..+.......+.+.++.
T Consensus       130 --------~~~~~fD~V~~d~~~~~~~~~~~~~~~~-----~~LkpgG~lv~~~~~~~~~~~~~~~l~~  185 (221)
T 3u81_A          130 --------YDVDTLDMVFLDHWKDRYLPDTLLLEKC-----GLLRKGTVLLADNVIVPGTPDFLAYVRG  185 (221)
T ss_dssp             --------SCCCCCSEEEECSCGGGHHHHHHHHHHT-----TCCCTTCEEEESCCCCCCCHHHHHHHHH
T ss_pred             --------cCCCceEEEEEcCCcccchHHHHHHHhc-----cccCCCeEEEEeCCCCcchHHHHHHHhh
Confidence                    001359999999865432 222222211     1344568888877666555666666644

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.42  E-value=1.6e-12  Score=112.91  Aligned_cols=117  Identities=15%  Similarity=0.132  Sum_probs=91.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.++.+|||+|||+|.+++.+++.+  ++|+|+|+|+.+++.|++|++.++  +. +++++++|+.+.+..         
T Consensus        38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~-~v~~~~~d~~~~~~~---------  105 (204)
T 3e05_A           38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV--AR-NVTLVEAFAPEGLDD---------  105 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHT--CT-TEEEEECCTTTTCTT---------
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC--CC-cEEEEeCChhhhhhc---------
Confidence            4578999999999999999999976  799999999999999999999999  84 899999998764332         


Q ss_pred             cccCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhHhhhc
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSY  305 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~y  305 (324)
                               ...||.|+++.+.. ...+++.+.. |++        +|.+.+.++.........+.++..
T Consensus       106 ---------~~~~D~i~~~~~~~~~~~~l~~~~~~Lkp--------gG~l~~~~~~~~~~~~~~~~l~~~  158 (204)
T 3e05_A          106 ---------LPDPDRVFIGGSGGMLEEIIDAVDRRLKS--------EGVIVLNAVTLDTLTKAVEFLEDH  158 (204)
T ss_dssp             ---------SCCCSEEEESCCTTCHHHHHHHHHHHCCT--------TCEEEEEECBHHHHHHHHHHHHHT
T ss_pred             ---------CCCCCEEEECCCCcCHHHHHHHHHHhcCC--------CeEEEEEecccccHHHHHHHHHHC
Confidence                     13499999997643 3456666655 665        499998887765555555555443

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.41  E-value=3.2e-13  Score=122.56  Aligned_cols=89  Identities=21%  Similarity=0.198  Sum_probs=71.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHH---hCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRL---NERQVKTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~---n~~~l~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      ..++.+|||+|||+|.+++.++++.  .+|+|+|+++.+++.|++|+..   |+  +.++++++++|+.++........+
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~--l~~~v~~~~~D~~~~~~~~~~~~~  111 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA--FSARIEVLEADVTLRAKARVEAGL  111 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTT--TGGGEEEEECCTTCCHHHHHHTTC
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCC--CcceEEEEeCCHHHHhhhhhhhcc
Confidence            3467899999999999999999864  5999999999999999999998   88  877899999999887543211100


Q ss_pred             hhhcccCCCCCCCCcccEEEECChhhh
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                                 ....||+|++|||+..
T Consensus       112 -----------~~~~fD~Vv~nPPy~~  127 (260)
T 2ozv_A          112 -----------PDEHFHHVIMNPPYND  127 (260)
T ss_dssp             -----------CTTCEEEEEECCCC--
T ss_pred             -----------CCCCcCEEEECCCCcC
Confidence                       0245999999999864

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.41  E-value=9.1e-13  Score=119.90  Aligned_cols=110  Identities=20%  Similarity=0.232  Sum_probs=85.9

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhc----CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARR----GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~----g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      .+++|.+|||+|||+|.+++.++++    |++|+|+|+|+.|++.|++++...+  ...+++++++|+.++..       
T Consensus        67 ~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~--~~~~v~~~~~D~~~~~~-------  137 (261)
T 4gek_A           67 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVIEGDIRDIAI-------  137 (261)
T ss_dssp             HCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCTTTCCC-------
T ss_pred             hCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc--cCceEEEeecccccccc-------
Confidence            3679999999999999999999974    6799999999999999999999877  66689999999876421       


Q ss_pred             hhhcccCCCCCCCCcccEEEEC------ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhH
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMN------LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLET  298 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~n------pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~  298 (324)
                                   ..||.|+++      +|.....++..+.. |+++        |.+.+.......+...
T Consensus       138 -------------~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpG--------G~lii~e~~~~~~~~~  187 (261)
T 4gek_A          138 -------------ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPG--------GALVLSEKFSFEDAKV  187 (261)
T ss_dssp             -------------CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEEBCCSSHHH
T ss_pred             -------------cccccceeeeeeeecCchhHhHHHHHHHHHcCCC--------cEEEEEeccCCCCHHH
Confidence                         249999986      22223356666655 7776        8888776666555443

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.41  E-value=2.3e-12  Score=123.16  Aligned_cols=133  Identities=14%  Similarity=0.060  Sum_probs=97.0

Q ss_pred             eCCeEEEEeccceeecCcChHHHHHHHhhcc--CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHH
Q psy16898        131 ENGCTFKMDFSKVYWNSRLSTEHERVTKEVR--EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRL  206 (324)
Q Consensus       131 e~g~~f~id~~~~f~~~r~~~e~~~~~~~~~--~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~  206 (324)
                      +.++++..++..|.+. .+....+.+++.+.  ++.+|||+|||+|.+++.+++.  +++|+|+|+|+.+++.+++|+..
T Consensus       190 ~~~~~~~~~pg~Fs~~-~~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~  268 (375)
T 4dcm_A          190 GTDWTIHNHANVFSRT-GLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET  268 (375)
T ss_dssp             TTTEEEEECTTCTTCS-SCCHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCceEEEeCCCcccCC-cccHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHH
Confidence            4566666676655442 22333334555544  4589999999999999999997  57999999999999999999999


Q ss_pred             hCCCCCC--CeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh---------HHHHHHHhc-cchh
Q psy16898        207 NERQVKT--PISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA---------VEYVRYLKV-LTRE  274 (324)
Q Consensus       207 n~~~l~~--~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a---------~~~l~~~~~-l~~~  274 (324)
                      |+  +.+  +++++.+|+.+...                   ...||.|++|||...         ..++..+.. |+++
T Consensus       269 ng--l~~~~~v~~~~~D~~~~~~-------------------~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkpg  327 (375)
T 4dcm_A          269 NM--PEALDRCEFMINNALSGVE-------------------PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKIN  327 (375)
T ss_dssp             HC--GGGGGGEEEEECSTTTTCC-------------------TTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEE
T ss_pred             cC--CCcCceEEEEechhhccCC-------------------CCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCC
Confidence            98  763  58889999876321                   235999999999632         245666655 7765


Q ss_pred             hcCCCCCCCEEEEEEcccC
Q psy16898        275 EFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       275 ~~~~~~~~g~vh~y~f~~~  293 (324)
                              |.+.+.+....
T Consensus       328 --------G~l~iv~n~~~  338 (375)
T 4dcm_A          328 --------GELYIVANRHL  338 (375)
T ss_dssp             --------EEEEEEEETTS
T ss_pred             --------cEEEEEEECCc
Confidence                    88887665544

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.40  E-value=1.5e-12  Score=113.04  Aligned_cols=115  Identities=17%  Similarity=0.160  Sum_probs=87.6

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      .+.++.+|||+|||+|.+++.+++.+. +|+|+|+|+.+++.|++|+..++  +. +++++++|+.++.           
T Consensus        57 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~-~v~~~~~d~~~~~-----------  122 (205)
T 3grz_A           57 AMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNG--IY-DIALQKTSLLADV-----------  122 (205)
T ss_dssp             HCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT--CC-CCEEEESSTTTTC-----------
T ss_pred             hccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CC-ceEEEeccccccC-----------
Confidence            356889999999999999999999876 99999999999999999999999  87 4999999987632           


Q ss_pred             cccCCCCCCCCcccEEEECChhhh-HHHHHHHhccchhhcCCCCCCCEEEEEEcccCCChhHHhHhh
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPATA-VEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIK  303 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~a-~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~  303 (324)
                               ...||.|++++|... ..++..+..       .++++|.+.+.++.........+.++
T Consensus       123 ---------~~~fD~i~~~~~~~~~~~~l~~~~~-------~L~~gG~l~~~~~~~~~~~~~~~~~~  173 (205)
T 3grz_A          123 ---------DGKFDLIVANILAEILLDLIPQLDS-------HLNEDGQVIFSGIDYLQLPKIEQALA  173 (205)
T ss_dssp             ---------CSCEEEEEEESCHHHHHHHGGGSGG-------GEEEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred             ---------CCCceEEEECCcHHHHHHHHHHHHH-------hcCCCCEEEEEecCcccHHHHHHHHH
Confidence                     135999999988742 123333333       22345888887777665555555543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.39  E-value=3.4e-12  Score=112.28  Aligned_cols=110  Identities=14%  Similarity=0.060  Sum_probs=87.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ..++.+|||+|||+|.+++.+++.   +++|+++|+++.+++.|++|++.++  +.++++++++|+.+.+.......   
T Consensus        62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~---  136 (225)
T 3tr6_A           62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG--LSDKIGLRLSPAKDTLAELIHAG---  136 (225)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCHHHHHHHHHTTT---
T ss_pred             hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--CCCceEEEeCCHHHHHHHhhhcc---
Confidence            457889999999999999999986   6799999999999999999999999  87679999999988766532100   


Q ss_pred             hcccCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                               ....||.|++|++.. ...+++.+.. |+++        |++.++...
T Consensus       137 ---------~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pg--------G~lv~~~~~  176 (225)
T 3tr6_A          137 ---------QAWQYDLIYIDADKANTDLYYEESLKLLREG--------GLIAVDNVL  176 (225)
T ss_dssp             ---------CTTCEEEEEECSCGGGHHHHHHHHHHHEEEE--------EEEEEECSS
T ss_pred             ---------CCCCccEEEECCCHHHHHHHHHHHHHhcCCC--------cEEEEeCCC
Confidence                     013599999998864 3456776665 7775        787776443

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.39  E-value=1.6e-12  Score=112.96  Aligned_cols=75  Identities=28%  Similarity=0.268  Sum_probs=66.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      ..++.+|||+|||+|.+++.+++.|. +|+|+|+|+.+++.+++|++.++  +  +++++++|+.++.            
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~--~~~~~~~d~~~~~------------  110 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK--G--KFKVFIGDVSEFN------------  110 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT--T--SEEEEESCGGGCC------------
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcC--C--CEEEEECchHHcC------------
Confidence            34788999999999999999999876 89999999999999999999998  7  6999999998741            


Q ss_pred             ccCCCCCCCCcccEEEECChh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPA  259 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~  259 (324)
                               ..||.|++|||.
T Consensus       111 ---------~~~D~v~~~~p~  122 (207)
T 1wy7_A          111 ---------SRVDIVIMNPPF  122 (207)
T ss_dssp             ---------CCCSEEEECCCC
T ss_pred             ---------CCCCEEEEcCCC
Confidence                     139999999995

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.39  E-value=1.6e-12  Score=115.64  Aligned_cols=80  Identities=24%  Similarity=0.237  Sum_probs=72.1

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .++.+|||+|||+|.+++.+++.|.+|+|+|+|+.+++.|++|++.++  +.++++++++|+.++...            
T Consensus        77 ~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~------------  142 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYG--IADKIEFICGDFLLLASF------------  142 (241)
T ss_dssp             SCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHGGG------------
T ss_pred             cCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcC--CCcCeEEEECChHHhccc------------
Confidence            478999999999999999999999999999999999999999999999  855899999999986521            


Q ss_pred             CCCCCCCCcccEEEECChhhh
Q psy16898        241 EGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP~~a  261 (324)
                             ..||.|++|||...
T Consensus       143 -------~~~D~v~~~~~~~~  156 (241)
T 3gdh_A          143 -------LKADVVFLSPPWGG  156 (241)
T ss_dssp             -------CCCSEEEECCCCSS
T ss_pred             -------CCCCEEEECCCcCC
Confidence                   35999999999854

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.39  E-value=2.1e-12  Score=120.62  Aligned_cols=80  Identities=14%  Similarity=0.185  Sum_probs=69.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.+|.+|||+|||+|.+++.+++.   +.+|+|+|+|+.+++.+++|++.++  +. +++++++|+.++...        
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g--~~-~v~~~~~D~~~~~~~--------  184 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG--VL-NVILFHSSSLHIGEL--------  184 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT--CC-SEEEESSCGGGGGGG--------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC--CC-eEEEEECChhhcccc--------
Confidence            568899999999999999999974   3699999999999999999999999  87 799999999875431        


Q ss_pred             hcccCCCCCCCCcccEEEECChhh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                ...||.|++|+|.+
T Consensus       185 ----------~~~fD~Il~d~Pcs  198 (315)
T 1ixk_A          185 ----------NVEFDKILLDAPCT  198 (315)
T ss_dssp             ----------CCCEEEEEEECCTT
T ss_pred             ----------cccCCEEEEeCCCC
Confidence                      13599999999964

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.39  E-value=9.2e-12  Score=109.42  Aligned_cols=109  Identities=13%  Similarity=0.060  Sum_probs=86.6

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ..++.+|||+|||+|.+++.+|+.   +++|+++|+++.+++.|++|+..++  +.++++++++|+.+.+......    
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~----  129 (223)
T 3duw_A           56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN--LNDRVEVRTGLALDSLQQIENE----  129 (223)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCHHHHHHHHHHT----
T ss_pred             hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHHHHhc----
Confidence            457889999999999999999996   7799999999999999999999999  8767999999999877654321    


Q ss_pred             hcccCCCCCCCCcccEEEECChhhh-HHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATA-VEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a-~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                               ....||.|++|.+... ..+++.+.. |++        ||++.++...
T Consensus       130 ---------~~~~fD~v~~d~~~~~~~~~l~~~~~~L~p--------gG~lv~~~~~  169 (223)
T 3duw_A          130 ---------KYEPFDFIFIDADKQNNPAYFEWALKLSRP--------GTVIIGDNVV  169 (223)
T ss_dssp             ---------TCCCCSEEEECSCGGGHHHHHHHHHHTCCT--------TCEEEEESCS
T ss_pred             ---------CCCCcCEEEEcCCcHHHHHHHHHHHHhcCC--------CcEEEEeCCC
Confidence                     0134999999987543 356665554 555        4888776443

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.39  E-value=3.9e-12  Score=124.34  Aligned_cols=80  Identities=21%  Similarity=0.323  Sum_probs=70.2

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--C-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--G-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.+|++|||+|||+|..++.+|+.  + ..|+|+|+++.+++.+++|++.++  +. ++.++++|+.++....       
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g--~~-nv~v~~~Da~~l~~~~-------  172 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG--VS-NAIVTNHAPAELVPHF-------  172 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT--CS-SEEEECCCHHHHHHHH-------
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CC-ceEEEeCCHHHhhhhc-------
Confidence            568999999999999999999974  3 599999999999999999999999  87 7999999999875432       


Q ss_pred             hcccCCCCCCCCcccEEEECChh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPA  259 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~  259 (324)
                                ...||.|++|||.
T Consensus       173 ----------~~~FD~Il~DaPC  185 (456)
T 3m4x_A          173 ----------SGFFDRIVVDAPC  185 (456)
T ss_dssp             ----------TTCEEEEEEECCC
T ss_pred             ----------cccCCEEEECCCC
Confidence                      1359999999995

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.39  E-value=3.8e-12  Score=124.68  Aligned_cols=80  Identities=25%  Similarity=0.356  Sum_probs=69.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--C-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--G-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ..+|++|||+|||+|..++.+|+.  + ..|+|+|+|+.+++.+++|++.++  +.  +.++++|+.++....       
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G--~~--v~~~~~Da~~l~~~~-------  167 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWG--AP--LAVTQAPPRALAEAF-------  167 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC--CC--CEEECSCHHHHHHHH-------
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--Ce--EEEEECCHHHhhhhc-------
Confidence            568999999999999999999974  3 599999999999999999999999  86  999999999875421       


Q ss_pred             hcccCCCCCCCCcccEEEECChhh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                ...||.|++|||.+
T Consensus       168 ----------~~~FD~Il~D~PcS  181 (464)
T 3m6w_A          168 ----------GTYFHRVLLDAPCS  181 (464)
T ss_dssp             ----------CSCEEEEEEECCCC
T ss_pred             ----------cccCCEEEECCCcC
Confidence                      13599999999974

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.38  E-value=6.6e-13  Score=119.19  Aligned_cols=113  Identities=17%  Similarity=0.237  Sum_probs=89.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.++.+|||+|||+|.+++.+++.   +.+|+++|+++.+++.|++|++.++  +.++++++++|+.+...         
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~---------  159 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG--FDDRVTIKLKDIYEGIE---------  159 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT--CTTTEEEECSCGGGCCC---------
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC--CCCceEEEECchhhccC---------
Confidence            568899999999999999999987   6799999999999999999999999  87669999999985421         


Q ss_pred             hcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhHh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKI  302 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v  302 (324)
                                ...||.|++|+|.. ..+++.+.. |+++        |.+.+++..........+.+
T Consensus       160 ----------~~~~D~v~~~~~~~-~~~l~~~~~~L~~g--------G~l~~~~~~~~~~~~~~~~l  207 (255)
T 3mb5_A          160 ----------EENVDHVILDLPQP-ERVVEHAAKALKPG--------GFFVAYTPCSNQVMRLHEKL  207 (255)
T ss_dssp             ----------CCSEEEEEECSSCG-GGGHHHHHHHEEEE--------EEEEEEESSHHHHHHHHHHH
T ss_pred             ----------CCCcCEEEECCCCH-HHHHHHHHHHcCCC--------CEEEEEECCHHHHHHHHHHH
Confidence                      13599999999974 455666655 7775        88888876554333444444

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.38  E-value=3e-12  Score=108.03  Aligned_cols=119  Identities=13%  Similarity=0.025  Sum_probs=91.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.++.+|||+|||+|.+++.+++.  +++|+++|+|+.+++.|++|+..++  +.+++ ++++|+.+.+...        
T Consensus        23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~-~~~~d~~~~~~~~--------   91 (178)
T 3hm2_A           23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLG--VSDRI-AVQQGAPRAFDDV--------   91 (178)
T ss_dssp             CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTT--CTTSE-EEECCTTGGGGGC--------
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhC--CCCCE-EEecchHhhhhcc--------
Confidence            457889999999999999999986  6699999999999999999999998  87678 8899986533221        


Q ss_pred             cccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhHhhhcC
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSYD  306 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~y~  306 (324)
                               ...||.|+++.+.....+++.+.. |++        +|.+.+.++.........+.++.+.
T Consensus        92 ---------~~~~D~i~~~~~~~~~~~l~~~~~~L~~--------gG~l~~~~~~~~~~~~~~~~~~~~~  144 (178)
T 3hm2_A           92 ---------PDNPDVIFIGGGLTAPGVFAAAWKRLPV--------GGRLVANAVTVESEQMLWALRKQFG  144 (178)
T ss_dssp             ---------CSCCSEEEECC-TTCTTHHHHHHHTCCT--------TCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred             ---------CCCCCEEEECCcccHHHHHHHHHHhcCC--------CCEEEEEeeccccHHHHHHHHHHcC
Confidence                     135999999987654456666655 555        5898888877766666666666554

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.37  E-value=1.5e-12  Score=114.04  Aligned_cols=102  Identities=14%  Similarity=0.162  Sum_probs=81.3

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .++.+|||+|||+|.+++.+|+.  +++|+|+|+|+.+++.|++|+..++  +. +++++++|+.++.... .       
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~--~~-~v~~~~~d~~~~~~~~-~-------  108 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG--VP-NIKLLWVDGSDLTDYF-E-------  108 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC--CS-SEEEEECCSSCGGGTS-C-------
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcC--CC-CEEEEeCCHHHHHhhc-C-------
Confidence            35789999999999999999985  5699999999999999999999999  85 8999999998733111 0       


Q ss_pred             ccCCCCCCCCcccEEEECChhh------------hHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        239 QSEGNSTGGTAVARVIMNLPAT------------AVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~------------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                              ...||.|++|+|..            ...++..+.. |++        +|.+++.+
T Consensus       109 --------~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp--------gG~l~~~~  156 (214)
T 1yzh_A          109 --------DGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPE--------NGEIHFKT  156 (214)
T ss_dssp             --------TTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCT--------TCEEEEEE
T ss_pred             --------CCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCC--------CcEEEEEe
Confidence                    13599999998852            1357776665 665        48888765

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.37  E-value=1.3e-12  Score=125.78  Aligned_cols=84  Identities=18%  Similarity=0.166  Sum_probs=72.7

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh--CCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLN--ERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n--~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      .+.+|.+|||+|||+|.+++.+++.+++|+|+|+|+.+++.|++|++.+  +  +. +++++++|+.+++.....     
T Consensus        90 ~l~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~g--l~-~i~~i~~Da~~~L~~~~~-----  161 (410)
T 3ll7_A           90 FIREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNE--GK-DVNILTGDFKEYLPLIKT-----  161 (410)
T ss_dssp             GSCTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCT--TC-EEEEEESCGGGSHHHHHH-----
T ss_pred             hcCCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccC--CC-cEEEEECcHHHhhhhccC-----
Confidence            3446899999999999999999999899999999999999999999998  8  74 899999999987654211     


Q ss_pred             hcccCCCCCCCCcccEEEECChhhh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                                 ..||.|++|||+..
T Consensus       162 -----------~~fDvV~lDPPrr~  175 (410)
T 3ll7_A          162 -----------FHPDYIYVDPARRS  175 (410)
T ss_dssp             -----------HCCSEEEECCEEC-
T ss_pred             -----------CCceEEEECCCCcC
Confidence                       23999999999964

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.36  E-value=6.2e-13  Score=119.50  Aligned_cols=85  Identities=11%  Similarity=0.103  Sum_probs=68.3

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH-HHHHHHHhhhhhc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF-LQTDARAHLVRWS  238 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~-~~~~~~~~~~~~~  238 (324)
                      ++.+|||+|||+|.+++.++++  +++|+|+|+|+.|++.|++|++.++  +.++++++++|+.+. ......       
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~-------  135 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN--LSDLIKVVKVPQKTLLMDALKE-------  135 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTCSSTTTSTT-------
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcC--CCccEEEEEcchhhhhhhhhhc-------
Confidence            5779999999999999999875  6799999999999999999999999  876799999998652 211100       


Q ss_pred             ccCCCCCCCCcccEEEECChhhh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                            .....||.|++|||+..
T Consensus       136 ------~~~~~fD~i~~npp~~~  152 (254)
T 2h00_A          136 ------ESEIIYDFCMCNPPFFA  152 (254)
T ss_dssp             ------CCSCCBSEEEECCCCC-
T ss_pred             ------ccCCcccEEEECCCCcc
Confidence                  00035999999999864

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.36  E-value=1e-12  Score=125.41  Aligned_cols=81  Identities=25%  Similarity=0.174  Sum_probs=71.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA--IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~--~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      ..++.+|||+|||+|++++.+|..+.  +|+|+|+|+.+++.|++|++.++  +.+++++.++|+.++...         
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~g--l~~~i~~~~~D~~~~~~~---------  283 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAG--VLDKIKFIQGDATQLSQY---------  283 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTT--CGGGCEEEECCGGGGGGT---------
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC--CCCceEEEECChhhCCcc---------
Confidence            56788999999999999999999876  99999999999999999999999  866899999999885432         


Q ss_pred             cccCCCCCCCCcccEEEECChhh
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                               ...||.|++|||+.
T Consensus       284 ---------~~~fD~Ii~npPyg  297 (373)
T 3tm4_A          284 ---------VDSVDFAISNLPYG  297 (373)
T ss_dssp             ---------CSCEEEEEEECCCC
T ss_pred             ---------cCCcCEEEECCCCC
Confidence                     13599999999964

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.35  E-value=4.2e-12  Score=112.36  Aligned_cols=103  Identities=16%  Similarity=0.132  Sum_probs=82.2

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      ++.+|||+|||+|.+++.+|+.  ++.|+|+|+++.+++.|++|+..++  +. +++++++|+.+++.....        
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~--l~-nv~~~~~Da~~~l~~~~~--------  102 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEG--LS-NLRVMCHDAVEVLHKMIP--------  102 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTT--CS-SEEEECSCHHHHHHHHSC--------
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhC--CC-cEEEEECCHHHHHHHHcC--------
Confidence            6789999999999999999985  4699999999999999999999998  87 799999999997654211        


Q ss_pred             cCCCCCCCCcccEEEEC--Chh--hh--------HHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        240 SEGNSTGGTAVARVIMN--LPA--TA--------VEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~n--pP~--~a--------~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                             ...||.|+++  +|.  ..        ..++..+.. |+++        |.+++.+-
T Consensus       103 -------~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpG--------G~l~i~td  151 (218)
T 3dxy_A          103 -------DNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLG--------GVFHMATD  151 (218)
T ss_dssp             -------TTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEE--------EEEEEEES
T ss_pred             -------CCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCC--------cEEEEEeC
Confidence                   2459999997  331  11        147777766 8876        88887663

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.35  E-value=1.7e-11  Score=103.99  Aligned_cols=117  Identities=18%  Similarity=0.217  Sum_probs=91.3

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +.++.+|||+|||+|.+++.+++.+.+|+++|+|+.+++.+++|+..++  +.++++++++|+.+.+..           
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~-----------   97 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHG--LGDNVTLMEGDAPEALCK-----------   97 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTT--CCTTEEEEESCHHHHHTT-----------
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcC--CCcceEEEecCHHHhccc-----------
Confidence            4578899999999999999999988999999999999999999999998  855899999999874332           


Q ss_pred             cCCCCCCCCcccEEEECChh-hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhHhhh
Q psy16898        240 SEGNSTGGTAVARVIMNLPA-TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKS  304 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~-~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~  304 (324)
                             ...||.|+++.+. ....++..+.. ++++        |.+.+..+.........+..+.
T Consensus        98 -------~~~~D~v~~~~~~~~~~~~l~~~~~~l~~g--------G~l~~~~~~~~~~~~~~~~l~~  149 (192)
T 1l3i_A           98 -------IPDIDIAVVGGSGGELQEILRIIKDKLKPG--------GRIIVTAILLETKFEAMECLRD  149 (192)
T ss_dssp             -------SCCEEEEEESCCTTCHHHHHHHHHHTEEEE--------EEEEEEECBHHHHHHHHHHHHH
T ss_pred             -------CCCCCEEEECCchHHHHHHHHHHHHhcCCC--------cEEEEEecCcchHHHHHHHHHH
Confidence                   1249999999873 34567777766 6665        8887777665444444444443

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.35  E-value=3.1e-12  Score=122.99  Aligned_cols=113  Identities=19%  Similarity=0.162  Sum_probs=84.9

Q ss_pred             EEEEeCCeEEEEeccce------e---ecCcChHHHHH--HHh--hccCCCEEEEEcCCCchhHHHHHhcCC--------
Q psy16898        127 TMHKENGCTFKMDFSKV------Y---WNSRLSTEHER--VTK--EVREGDLVLDVFAGVGPFSIPAARRGA--------  185 (324)
Q Consensus       127 ~~~~e~g~~f~id~~~~------f---~~~r~~~e~~~--~~~--~~~~g~~VLDl~~G~G~~al~~a~~g~--------  185 (324)
                      +.+.++++.+.+|.+.-      |   .......|...  ++.  ...++..|||+|||+|+|++.+|..++        
T Consensus       153 v~l~~~~~~~~ld~sg~~L~krgyr~~~~~Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R  232 (393)
T 3k0b_A          153 VSILKDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNR  232 (393)
T ss_dssp             EEEETTEEEEEEESSSSCTTCCSTTTTSCSCSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTS
T ss_pred             EEEECCEEEEEEecCCCcccccccccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccc
Confidence            34456889999996541      1   11111223332  233  245788999999999999999997433        


Q ss_pred             --------------------------------EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHh
Q psy16898        186 --------------------------------IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAH  233 (324)
Q Consensus       186 --------------------------------~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~  233 (324)
                                                      +|+|+|+|+.|++.|++|++.++  +.+++++.++|+.++..      
T Consensus       233 ~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~g--l~~~I~~~~~D~~~~~~------  304 (393)
T 3k0b_A          233 EFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAG--LGDLITFRQLQVADFQT------  304 (393)
T ss_dssp             CCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTT--CTTCSEEEECCGGGCCC------
T ss_pred             cchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChHhCCC------
Confidence                                            49999999999999999999999  88779999999987532      


Q ss_pred             hhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        234 LVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       234 ~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                   ...||+||+|||+.
T Consensus       305 -------------~~~fD~Iv~NPPYg  318 (393)
T 3k0b_A          305 -------------EDEYGVVVANPPYG  318 (393)
T ss_dssp             -------------CCCSCEEEECCCCC
T ss_pred             -------------CCCCCEEEECCCCc
Confidence                         13599999999974

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.34  E-value=4.1e-12  Score=110.83  Aligned_cols=95  Identities=16%  Similarity=0.061  Sum_probs=71.0

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh------------CCCCCCCeEEEeccHHHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLN------------ERQVKTPISATQKDARDFLQ  227 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n------------~~~l~~~v~~~~~D~~~~~~  227 (324)
                      +.++.+|||+|||+|.++..+|++|++|+|+|+|+.|++.|+++...+            .  . .+++++++|+.++..
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~--~-~~v~~~~~d~~~l~~   96 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYA--A-PGIEIWCGDFFALTA   96 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEE--C-SSSEEEEECCSSSTH
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCccccccccccccc--C-CccEEEECccccCCc
Confidence            357889999999999999999999999999999999999999876531            1  1 369999999987643


Q ss_pred             HHHHHhhhhhcccCCCCCCCCcccEEEEC------ChhhhHHHHHHHhc-cchh
Q psy16898        228 TDARAHLVRWSQSEGNSTGGTAVARVIMN------LPATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~fD~Vi~n------pP~~a~~~l~~~~~-l~~~  274 (324)
                      ...                 ..||.|++.      ++.....++..+.. |+++
T Consensus        97 ~~~-----------------~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkpg  133 (203)
T 1pjz_A           97 RDI-----------------GHCAAFYDRAAMIALPADMRERYVQHLEALMPQA  133 (203)
T ss_dssp             HHH-----------------HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE
T ss_pred             ccC-----------------CCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCC
Confidence            311                 139999863      22222345666655 6665

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.34  E-value=1.7e-11  Score=110.18  Aligned_cols=107  Identities=11%  Similarity=0.102  Sum_probs=85.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ..++.+|||+|||+|..++.+|+.   +++|+++|+++.+++.|++|++.++  +.++++++.+|+.+++.....     
T Consensus        61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~l~~~~~-----  133 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG--VDQRVTLREGPALQSLESLGE-----  133 (248)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT--CTTTEEEEESCHHHHHHTCCS-----
T ss_pred             hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHhcCC-----
Confidence            457899999999999999999986   6799999999999999999999999  877899999999987654210     


Q ss_pred             hcccCCCCCCCCcccEEEECChhhh-HHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATA-VEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a-~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                                ...||.|++|.+... ..+++.+.. |++        ||++.+....
T Consensus       134 ----------~~~fD~V~~d~~~~~~~~~l~~~~~~Lkp--------GG~lv~~~~~  172 (248)
T 3tfw_A          134 ----------CPAFDLIFIDADKPNNPHYLRWALRYSRP--------GTLIIGDNVV  172 (248)
T ss_dssp             ----------CCCCSEEEECSCGGGHHHHHHHHHHTCCT--------TCEEEEECCS
T ss_pred             ----------CCCeEEEEECCchHHHHHHHHHHHHhcCC--------CeEEEEeCCC
Confidence                      135999999987643 356666655 555        4888776443

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.34  E-value=5.4e-12  Score=110.95  Aligned_cols=101  Identities=13%  Similarity=0.155  Sum_probs=80.3

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      ++.+|||+|||+|.+++.+|+.  ++.|+|+|+|+.+++.|++|+..++  +. +++++++|+.++.... .        
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~--~~-nv~~~~~d~~~l~~~~-~--------  105 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE--AQ-NVKLLNIDADTLTDVF-E--------  105 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC--CS-SEEEECCCGGGHHHHC-C--------
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcC--CC-CEEEEeCCHHHHHhhc-C--------
Confidence            5789999999999999999985  6799999999999999999999998  86 7999999998843211 0        


Q ss_pred             cCCCCCCCCcccEEEECChhh------------hHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        240 SEGNSTGGTAVARVIMNLPAT------------AVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~------------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                             ...||.|+++.|..            ...++..+.. |+++        |.+++.+
T Consensus       106 -------~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~Lkpg--------G~l~~~t  153 (213)
T 2fca_A          106 -------PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG--------GSIHFKT  153 (213)
T ss_dssp             -------TTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS--------CEEEEEE
T ss_pred             -------cCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCC--------CEEEEEe
Confidence                   13499999875531            1456776665 6664        8888765

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.34  E-value=6.1e-13  Score=119.37  Aligned_cols=104  Identities=13%  Similarity=0.176  Sum_probs=80.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHh--------CCCCCCCeEEEeccHHHHHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLN--------ERQVKTPISATQKDARDFLQTD  229 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n--------~~~l~~~v~~~~~D~~~~~~~~  229 (324)
                      +.++.+|||+|||+|.+++.+|+.+  ..|+|+|+|+.+++.|++|++.+        +  +. ++.++++|+.+++...
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~--~~-nv~~~~~D~~~~l~~~  123 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHG--FQ-NINVLRGNAMKFLPNF  123 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCST--TT-TEEEEECCTTSCGGGT
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccC--CC-cEEEEeccHHHHHHHh
Confidence            4578899999999999999999964  48999999999999999999987        7  75 8999999998754421


Q ss_pred             HHHhhhhhcccCCCCCCCCcccEEEECChhhh------------HHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        230 ARAHLVRWSQSEGNSTGGTAVARVIMNLPATA------------VEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a------------~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                      ..               ...+|.|+++.|...            ..++..+.. |+++        |.+.+.+
T Consensus       124 ~~---------------~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkpg--------G~l~~~t  173 (246)
T 2vdv_E          124 FE---------------KGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEG--------GVVYTIT  173 (246)
T ss_dssp             SC---------------TTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEE--------EEEEEEE
T ss_pred             cc---------------ccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCC--------CEEEEEe
Confidence            11               135888887755421            367777666 7765        7777743

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.34  E-value=1.5e-12  Score=124.91  Aligned_cols=113  Identities=20%  Similarity=0.247  Sum_probs=85.4

Q ss_pred             EEEEeCCeEEEEeccc--e----e---ecCcChHHHHH--HHhh--ccCCCEEEEEcCCCchhHHHHHhcC---------
Q psy16898        127 TMHKENGCTFKMDFSK--V----Y---WNSRLSTEHER--VTKE--VREGDLVLDVFAGVGPFSIPAARRG---------  184 (324)
Q Consensus       127 ~~~~e~g~~f~id~~~--~----f---~~~r~~~e~~~--~~~~--~~~g~~VLDl~~G~G~~al~~a~~g---------  184 (324)
                      +.+.++++.+.+|.+.  +    |   .......|...  ++..  ..++..|||+|||+|+|++.+|..+         
T Consensus       147 ~~i~~~~~~~~lD~sG~~l~krgyr~~~~~Apl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R  226 (385)
T 3ldu_A          147 VFIHKDKVTISIDTTGDALHKRGYREKANKAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNR  226 (385)
T ss_dssp             EEEETTEEEEEEESCCSCTTCCSCCCC--CCCCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTS
T ss_pred             EEEECCEEEEEEecCCChhhhcccccCCCCCCCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCccc
Confidence            4456788999999763  1    1   11111223332  2332  4578899999999999999998753         


Q ss_pred             -------------------------------CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHh
Q psy16898        185 -------------------------------AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAH  233 (324)
Q Consensus       185 -------------------------------~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~  233 (324)
                                                     .+|+|+|+++.|++.|++|+..++  +.+++++.++|+.++..      
T Consensus       227 ~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~g--l~~~i~~~~~D~~~l~~------  298 (385)
T 3ldu_A          227 EFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAG--VDEYIEFNVGDATQFKS------  298 (385)
T ss_dssp             CCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEECCGGGCCC------
T ss_pred             ccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChhhcCc------
Confidence                                           469999999999999999999999  87789999999987532      


Q ss_pred             hhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        234 LVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       234 ~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                   ...||+||+|||+.
T Consensus       299 -------------~~~~D~Iv~NPPyg  312 (385)
T 3ldu_A          299 -------------EDEFGFIITNPPYG  312 (385)
T ss_dssp             -------------SCBSCEEEECCCCC
T ss_pred             -------------CCCCcEEEECCCCc
Confidence                         13599999999984

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.33  E-value=1.9e-12  Score=115.28  Aligned_cols=69  Identities=19%  Similarity=0.240  Sum_probs=62.2

Q ss_pred             HHhhccCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHH
Q psy16898        156 VTKEVREGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFL  226 (324)
Q Consensus       156 ~~~~~~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~  226 (324)
                      +.+.+.+|.+|||+|||+|.+++.+|+.+  .+|+|+|+|+.+++.|++|++.|+  +.+++++..+|+.+.+
T Consensus         9 l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g--l~~~i~~~~~d~l~~l   79 (225)
T 3kr9_A            9 VASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHG--LKEKIQVRLANGLAAF   79 (225)
T ss_dssp             HHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGC
T ss_pred             HHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCceEEEEECchhhhc
Confidence            44567889999999999999999999976  389999999999999999999999  9878999999987643

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.33  E-value=1.2e-11  Score=110.05  Aligned_cols=103  Identities=8%  Similarity=0.138  Sum_probs=84.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHH-HHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQ-TDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~-~~~~~~~~~  236 (324)
                      ..++.+|||+|||+|.+++.+|+  .+++|+++|+++.+++.|++|++.++  +.++++++++|+.+.+. ..       
T Consensus        69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~-------  139 (232)
T 3ntv_A           69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYH--FENQVRIIEGNALEQFENVN-------  139 (232)
T ss_dssp             HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTT--CTTTEEEEESCGGGCHHHHT-------
T ss_pred             hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECCHHHHHHhhc-------
Confidence            45788999999999999999999  56799999999999999999999999  87789999999988765 32       


Q ss_pred             hcccCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                                ...||.|++|.+.. ...+++.+.. |+++        |++.+..
T Consensus       140 ----------~~~fD~V~~~~~~~~~~~~l~~~~~~Lkpg--------G~lv~d~  176 (232)
T 3ntv_A          140 ----------DKVYDMIFIDAAKAQSKKFFEIYTPLLKHQ--------GLVITDN  176 (232)
T ss_dssp             ----------TSCEEEEEEETTSSSHHHHHHHHGGGEEEE--------EEEEEEC
T ss_pred             ----------cCCccEEEEcCcHHHHHHHHHHHHHhcCCC--------eEEEEee
Confidence                      13599999998653 3457777766 7765        7877653

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.32  E-value=1.9e-12  Score=118.17  Aligned_cols=102  Identities=17%  Similarity=0.206  Sum_probs=83.6

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHh-CCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLN-ERQVKTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n-~~~l~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      +.++.+|||+|||+|.+++.+++.   +.+|+++|+++.+++.|++|++.+ +  .. +++++++|+.+...        
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g--~~-~v~~~~~d~~~~~~--------  176 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD--IG-NVRTSRSDIADFIS--------  176 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC--CT-TEEEECSCTTTCCC--------
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC--CC-cEEEEECchhccCc--------
Confidence            457899999999999999999986   679999999999999999999988 7  65 79999999876211        


Q ss_pred             hhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                 ...||.|++|+|.. ..+++.+.. |+++        |.+.+.+...
T Consensus       177 -----------~~~fD~Vi~~~~~~-~~~l~~~~~~Lkpg--------G~l~i~~~~~  214 (275)
T 1yb2_A          177 -----------DQMYDAVIADIPDP-WNHVQKIASMMKPG--------SVATFYLPNF  214 (275)
T ss_dssp             -----------SCCEEEEEECCSCG-GGSHHHHHHTEEEE--------EEEEEEESSH
T ss_pred             -----------CCCccEEEEcCcCH-HHHHHHHHHHcCCC--------CEEEEEeCCH
Confidence                       13599999999873 456666655 7765        8888777654

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.32  E-value=6.3e-12  Score=120.49  Aligned_cols=111  Identities=17%  Similarity=0.151  Sum_probs=82.9

Q ss_pred             EEeCCeEEEEeccce------e---ecCcChHHHHH--HHh--hccCCCEEEEEcCCCchhHHHHHhcCC----------
Q psy16898        129 HKENGCTFKMDFSKV------Y---WNSRLSTEHER--VTK--EVREGDLVLDVFAGVGPFSIPAARRGA----------  185 (324)
Q Consensus       129 ~~e~g~~f~id~~~~------f---~~~r~~~e~~~--~~~--~~~~g~~VLDl~~G~G~~al~~a~~g~----------  185 (324)
                      +.++.+.+.+|.+.-      |   .......|...  ++.  ...++..|+|+|||+|+|++.+|..++          
T Consensus       148 ~~~~~~~~~ld~sg~~LhkRgyr~~~~~Apl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f  227 (384)
T 3ldg_A          148 LLKDQARVMIDTTGPSLFKRGYRTEKGGAPIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDF  227 (384)
T ss_dssp             EETTEEEEEEESSSSCTTCCSCCCC---CCCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCC
T ss_pred             EECCEEEEEEeccCCcccccCcccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccc
Confidence            346778888886651      1   11111223332  222  345788999999999999999997433          


Q ss_pred             ------------------------------EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        186 ------------------------------IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       186 ------------------------------~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                                                    +|+|+|+|+.|++.|++|++.++  +.+.+++.++|+.++...       
T Consensus       228 ~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~g--l~~~I~~~~~D~~~l~~~-------  298 (384)
T 3ldg_A          228 AFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVG--LEDVVKLKQMRLQDFKTN-------  298 (384)
T ss_dssp             GGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCGGGCCCC-------
T ss_pred             hhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChHHCCcc-------
Confidence                                          49999999999999999999999  887899999999875321       


Q ss_pred             hhcccCCCCCCCCcccEEEECChhh
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                  ..||+||+|||+.
T Consensus       299 ------------~~fD~Iv~NPPYG  311 (384)
T 3ldg_A          299 ------------KINGVLISNPPYG  311 (384)
T ss_dssp             ------------CCSCEEEECCCCT
T ss_pred             ------------CCcCEEEECCchh
Confidence                        3599999999974

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.32  E-value=1.8e-12  Score=115.65  Aligned_cols=107  Identities=13%  Similarity=0.125  Sum_probs=81.5

Q ss_pred             HHhhccCCCEEEEEcCCCchhHHHHHhcC-C-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHh
Q psy16898        156 VTKEVREGDLVLDVFAGVGPFSIPAARRG-A-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAH  233 (324)
Q Consensus       156 ~~~~~~~g~~VLDl~~G~G~~al~~a~~g-~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~  233 (324)
                      +.+.+.+|.+|+|+|||+|.+++.+++.| + +|+|+|+|+.+++.|++|++.|+  +.+++++.++|+.+.+...    
T Consensus        15 i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~g--l~~~I~~~~gD~l~~~~~~----   88 (230)
T 3lec_A           15 VANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHG--LTSKIDVRLANGLSAFEEA----   88 (230)
T ss_dssp             HHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCCGG----
T ss_pred             HHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhhccccc----
Confidence            45567889999999999999999999976 3 89999999999999999999999  9878999999998754321    


Q ss_pred             hhhhcccCCCCCCCCcccEEEE-CChh-hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        234 LVRWSQSEGNSTGGTAVARVIM-NLPA-TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       234 ~~~~~~~~~~~~~~~~fD~Vi~-npP~-~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                                    ..||.|++ +.=. .-.++++.... +++        ++.+.+...
T Consensus        89 --------------~~~D~IviaGmGg~lI~~IL~~~~~~l~~--------~~~lIlqp~  126 (230)
T 3lec_A           89 --------------DNIDTITICGMGGRLIADILNNDIDKLQH--------VKTLVLQPN  126 (230)
T ss_dssp             --------------GCCCEEEEEEECHHHHHHHHHHTGGGGTT--------CCEEEEEES
T ss_pred             --------------cccCEEEEeCCchHHHHHHHHHHHHHhCc--------CCEEEEECC
Confidence                          24998764 3322 12345555544 433        466666554

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.31  E-value=1.3e-11  Score=121.55  Aligned_cols=79  Identities=20%  Similarity=0.274  Sum_probs=69.1

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +|++|||+|||+|..++.+|+.   +..|+|+|+++.+++.+++|++.++  +. ++.++++|+.++....         
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g--~~-nv~~~~~D~~~~~~~~---------  184 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCG--IS-NVALTHFDGRVFGAAV---------  184 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT--CC-SEEEECCCSTTHHHHS---------
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CC-cEEEEeCCHHHhhhhc---------
Confidence            8899999999999999999984   3599999999999999999999999  87 7999999998764321         


Q ss_pred             ccCCCCCCCCcccEEEECChhh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                              ...||.|++|||.+
T Consensus       185 --------~~~fD~Il~D~PcS  198 (479)
T 2frx_A          185 --------PEMFDAILLDAPCS  198 (479)
T ss_dssp             --------TTCEEEEEEECCCC
T ss_pred             --------cccCCEEEECCCcC
Confidence                    13599999999974

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.30  E-value=6.8e-12  Score=112.02  Aligned_cols=102  Identities=15%  Similarity=0.065  Sum_probs=81.1

Q ss_pred             cCCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .++.+|||+|||+|.+++.+++  .+++|+|+|+|+.+++.|++|++.++  ++ +++++++|+.++......       
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~-~v~~~~~d~~~~~~~~~~-------  138 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ--LE-NTTFCHDRAETFGQRKDV-------  138 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT--CS-SEEEEESCHHHHTTCTTT-------
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--CC-CEEEEeccHHHhcccccc-------
Confidence            4788999999999999999995  56799999999999999999999999  87 699999999876421000       


Q ss_pred             ccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        239 QSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                              ...||.|+++.......+++.+.. |+++        |.+.++
T Consensus       139 --------~~~fD~V~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~  173 (240)
T 1xdz_A          139 --------RESYDIVTARAVARLSVLSELCLPLVKKN--------GLFVAL  173 (240)
T ss_dssp             --------TTCEEEEEEECCSCHHHHHHHHGGGEEEE--------EEEEEE
T ss_pred             --------cCCccEEEEeccCCHHHHHHHHHHhcCCC--------CEEEEE
Confidence                    135999998865444567777765 7765        777665

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.30  E-value=2.6e-11  Score=106.86  Aligned_cols=109  Identities=14%  Similarity=0.066  Sum_probs=85.9

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      ...++.+|||+|||+|.+++.+++.   +++|+++|+++.+++.|++|++.++  +.++++++++|+.+.+.......  
T Consensus        66 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~i~~~~~d~~~~~~~~~~~~--  141 (229)
T 2avd_A           66 RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE--AEHKIDLRLKPALETLDELLAAG--  141 (229)
T ss_dssp             HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT--CTTTEEEEESCHHHHHHHHHHTT--
T ss_pred             HhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC--CCCeEEEEEcCHHHHHHHHHhcC--
Confidence            3457889999999999999999984   5699999999999999999999998  86689999999998766543210  


Q ss_pred             hhcccCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                                ....||.|++|+|.. ...+++.+.. ++++        |++.+..
T Consensus       142 ----------~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pg--------G~lv~~~  179 (229)
T 2avd_A          142 ----------EAGTFDVAVVDADKENCSAYYERCLQLLRPG--------GILAVLR  179 (229)
T ss_dssp             ----------CTTCEEEEEECSCSTTHHHHHHHHHHHEEEE--------EEEEEEC
T ss_pred             ----------CCCCccEEEECCCHHHHHHHHHHHHHHcCCC--------eEEEEEC
Confidence                      003599999998753 2456666655 7765        7777654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.30  E-value=5.1e-12  Score=113.67  Aligned_cols=70  Identities=11%  Similarity=0.178  Sum_probs=63.2

Q ss_pred             HHhhccCCCEEEEEcCCCchhHHHHHhcC-C-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHH
Q psy16898        156 VTKEVREGDLVLDVFAGVGPFSIPAARRG-A-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQ  227 (324)
Q Consensus       156 ~~~~~~~g~~VLDl~~G~G~~al~~a~~g-~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~  227 (324)
                      +.+.+.+|.+|||+|||+|.+++.+++.+ + +|+|+|+|+.+++.|++|++.|+  +.+++++.++|+.+.+.
T Consensus        15 i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g--l~~~I~v~~gD~l~~~~   86 (244)
T 3gnl_A           15 VASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSG--LTEQIDVRKGNGLAVIE   86 (244)
T ss_dssp             HHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCC
T ss_pred             HHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCceEEEEecchhhccC
Confidence            45568899999999999999999999976 3 89999999999999999999999  98789999999987543

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.29  E-value=2.8e-12  Score=118.76  Aligned_cols=109  Identities=15%  Similarity=0.161  Sum_probs=74.1

Q ss_pred             EEEEeCCeEEEEeccceeecCcChHHHHHHHhh--ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHH
Q psy16898        127 TMHKENGCTFKMDFSKVYWNSRLSTEHERVTKE--VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASI  204 (324)
Q Consensus       127 ~~~~e~g~~f~id~~~~f~~~r~~~e~~~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~  204 (324)
                      +...++|++.+-.+++-|+......+  ++++.  +.++++|||+|||+|.++..+++++++|+|+|+++.+++.+++++
T Consensus        15 ~~~~~~~~~~~k~~GQnfL~d~~i~~--~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~   92 (295)
T 3gru_A           15 VPRGSHMFKPKKKLGQCFLIDKNFVN--KAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLK   92 (295)
T ss_dssp             ---------------CCEECCHHHHH--HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHH
T ss_pred             chhHhcCCCCccccCccccCCHHHHH--HHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHh
Confidence            45667888888888886654442222  34443  557899999999999999999999889999999999999999998


Q ss_pred             HHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        205 RLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       205 ~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      ..    .. +++++++|+.++....                  ..||.|++|+|+.
T Consensus        93 ~~----~~-~v~vi~gD~l~~~~~~------------------~~fD~Iv~NlPy~  125 (295)
T 3gru_A           93 EL----YN-NIEIIWGDALKVDLNK------------------LDFNKVVANLPYQ  125 (295)
T ss_dssp             HH----CS-SEEEEESCTTTSCGGG------------------SCCSEEEEECCGG
T ss_pred             cc----CC-CeEEEECchhhCCccc------------------CCccEEEEeCccc
Confidence            73    33 7999999998752211                  2399999999984

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.29  E-value=3.7e-12  Score=116.12  Aligned_cols=103  Identities=17%  Similarity=0.217  Sum_probs=84.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.++.+|||+|||+|.+++.+++.   +.+|+++|+++.+++.|++|++.++  +.++++++++|+.+.+.         
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~---------  178 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG--LIERVTIKVRDISEGFD---------  178 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT--CGGGEEEECCCGGGCCS---------
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC--CCCCEEEEECCHHHccc---------
Confidence            457889999999999999999986   4699999999999999999999988  85589999999986521         


Q ss_pred             hcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                ...||.|++|+|.. ..+++.+.. |+++        |.+.+++...
T Consensus       179 ----------~~~~D~V~~~~~~~-~~~l~~~~~~L~pg--------G~l~~~~~~~  216 (277)
T 1o54_A          179 ----------EKDVDALFLDVPDP-WNYIDKCWEALKGG--------GRFATVCPTT  216 (277)
T ss_dssp             ----------CCSEEEEEECCSCG-GGTHHHHHHHEEEE--------EEEEEEESSH
T ss_pred             ----------CCccCEEEECCcCH-HHHHHHHHHHcCCC--------CEEEEEeCCH
Confidence                      13499999999973 456666655 7765        8888877644

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.29  E-value=1.2e-11  Score=109.57  Aligned_cols=100  Identities=12%  Similarity=0.043  Sum_probs=81.3

Q ss_pred             CCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCC-CCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        163 GDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVK-TPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.+|||+|||+|..++.+|+.   +++|+++|+|+.+++.|++|++.++  +. ++++++++|+.+++....        
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~~i~~~~gda~~~l~~~~--------  126 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG--YSPSRVRFLLSRPLDVMSRLA--------  126 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT--CCGGGEEEECSCHHHHGGGSC--------
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCcCcEEEEEcCHHHHHHHhc--------
Confidence            349999999999999999983   6799999999999999999999999  87 789999999998765421        


Q ss_pred             ccCCCCCCCCcccEEEECChhhh-HHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        239 QSEGNSTGGTAVARVIMNLPATA-VEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~a-~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                              ...||.|++|.+... ..+++.+.. |+++        |++.+.
T Consensus       127 --------~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG--------G~lv~d  162 (221)
T 3dr5_A          127 --------NDSYQLVFGQVSPMDLKALVDAAWPLLRRG--------GALVLA  162 (221)
T ss_dssp             --------TTCEEEEEECCCTTTHHHHHHHHHHHEEEE--------EEEEET
T ss_pred             --------CCCcCeEEEcCcHHHHHHHHHHHHHHcCCC--------cEEEEe
Confidence                    135999999986543 346766655 7775        776664

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.29  E-value=7.1e-13  Score=119.07  Aligned_cols=46  Identities=17%  Similarity=0.115  Sum_probs=42.2

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc----CCEEEEEeCCHHHHHHHHHHHHHh
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR----GAIVAANDLNPDSYAWLQASIRLN  207 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~----g~~V~avD~~~~a~~~a~~N~~~n  207 (324)
                      ++.+|||+|||+|.+++.+++.    +.+|+|+|+|+.|++.|++|+..+
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~  100 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALL  100 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTT
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHh
Confidence            5679999999999999999986    569999999999999999999876

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.29  E-value=2.2e-11  Score=112.14  Aligned_cols=105  Identities=14%  Similarity=0.082  Sum_probs=84.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.++.+|||+|||+|.+++.+++. |++|+|+|+|+.+++.|++++..++  +.++++++++|+.++  .          
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~--~----------  135 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVD--SPRRKEVRIQGWEEF--D----------  135 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSC--CSSCEEEEECCGGGC--C----------
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECCHHHc--C----------
Confidence            468889999999999999999997 8999999999999999999999998  887899999999875  1          


Q ss_pred             ccCCCCCCCCcccEEEECChh-------------hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCC
Q psy16898        239 QSEGNSTGGTAVARVIMNLPA-------------TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMD  295 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~-------------~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~  295 (324)
                               ..||+|+++..-             .-..++..+.. |++        ||.+.+.++.....
T Consensus       136 ---------~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp--------gG~l~i~~~~~~~~  189 (302)
T 3hem_A          136 ---------EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD--------DGRMLLHTITIPDK  189 (302)
T ss_dssp             ---------CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT--------TCEEEEEEEECCCH
T ss_pred             ---------CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCC--------CcEEEEEEEeccCc
Confidence                     349999996321             11345655554 555        58888887776543

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.28  E-value=1.6e-11  Score=104.07  Aligned_cols=103  Identities=19%  Similarity=0.206  Sum_probs=77.6

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .++.+|||+|||+|.+++.+++++ +|+|+|+|+.|++.       ..     +++++++|+.+....            
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~-------~~-----~~~~~~~d~~~~~~~------------   76 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES-------HR-----GGNLVRADLLCSINQ------------   76 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT-------CS-----SSCEEECSTTTTBCG------------
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc-------cc-----CCeEEECChhhhccc------------
Confidence            467899999999999999999999 99999999999987       22     478999998763221            


Q ss_pred             CCCCCCCCcccEEEECChhh-------------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhHhhh
Q psy16898        241 EGNSTGGTAVARVIMNLPAT-------------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKS  304 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP~~-------------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~  304 (324)
                             ..||.|++|||..             ...++..+.. +         ++|.+.+.+.......+..+.++.
T Consensus        77 -------~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------pgG~l~~~~~~~~~~~~l~~~l~~  138 (170)
T 3q87_B           77 -------ESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV---------TVGMLYLLVIEANRPKEVLARLEE  138 (170)
T ss_dssp             -------GGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC---------CSSEEEEEEEGGGCHHHHHHHHHH
T ss_pred             -------CCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC---------CCCEEEEEEecCCCHHHHHHHHHH
Confidence                   3499999999985             2344544443 4         358888877666655555555543

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.27  E-value=1.8e-11  Score=110.49  Aligned_cols=103  Identities=17%  Similarity=0.070  Sum_probs=80.2

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .++.+|||+|||+|.+++.+|..  +++|+++|+|+.+++.|++|++.++  +. +++++++|+.++.....        
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--l~-~v~~~~~d~~~~~~~~~--------  147 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLG--LK-GARALWGRAEVLAREAG--------  147 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT--CS-SEEEEECCHHHHTTSTT--------
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC--CC-ceEEEECcHHHhhcccc--------
Confidence            46889999999999999999984  5699999999999999999999999  87 69999999988653200        


Q ss_pred             ccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        239 QSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                             ....||.|+++--..-..+++.+.. |+++        |.+.++.
T Consensus       148 -------~~~~fD~I~s~a~~~~~~ll~~~~~~Lkpg--------G~l~~~~  184 (249)
T 3g89_A          148 -------HREAYARAVARAVAPLCVLSELLLPFLEVG--------GAAVAMK  184 (249)
T ss_dssp             -------TTTCEEEEEEESSCCHHHHHHHHGGGEEEE--------EEEEEEE
T ss_pred             -------cCCCceEEEECCcCCHHHHHHHHHHHcCCC--------eEEEEEe
Confidence                   0135999999643323456666655 6665        7776654

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.27  E-value=3.4e-12  Score=118.36  Aligned_cols=104  Identities=12%  Similarity=0.129  Sum_probs=71.0

Q ss_pred             CCeEEEEeccceeecCcChHHHHHHHhh--ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCC
Q psy16898        132 NGCTFKMDFSKVYWNSRLSTEHERVTKE--VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNER  209 (324)
Q Consensus       132 ~g~~f~id~~~~f~~~r~~~e~~~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~  209 (324)
                      ++-.++-.+++.|+.+....+  ++++.  +.++.+|||+|||+|.++..+++++++|+|+|+++.+++.|++|+..++ 
T Consensus        12 ~~~~~~k~~Gq~fl~~~~i~~--~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~-   88 (299)
T 2h1r_A           12 SGRENLYFQGQHLLKNPGILD--KIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEG-   88 (299)
T ss_dssp             -----------CEECCHHHHH--HHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTT-
T ss_pred             ccccchhccccceecCHHHHH--HHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcC-
Confidence            344455555565654432222  34433  4578899999999999999999998899999999999999999999888 


Q ss_pred             CCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        210 QVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       210 ~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                       ++ +++++++|+.++..                    ..||.|++|||+.
T Consensus        89 -~~-~v~~~~~D~~~~~~--------------------~~~D~Vv~n~py~  117 (299)
T 2h1r_A           89 -YN-NLEVYEGDAIKTVF--------------------PKFDVCTANIPYK  117 (299)
T ss_dssp             -CC-CEEC----CCSSCC--------------------CCCSEEEEECCGG
T ss_pred             -CC-ceEEEECchhhCCc--------------------ccCCEEEEcCCcc
Confidence             75 89999999876421                    2499999999985

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.27  E-value=3.4e-11  Score=109.88  Aligned_cols=98  Identities=17%  Similarity=0.094  Sum_probs=79.8

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      ++.+|||+|||+|.+++.+++.|++|+|+|+|+.+++.|++++..++  +  +++++++|+.+...              
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~--~--~~~~~~~d~~~~~~--------------  181 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKEN--L--NISTALYDINAANI--------------  181 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--C--CEEEEECCGGGCCC--------------
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcC--C--ceEEEEeccccccc--------------
Confidence            78899999999999999999999999999999999999999999998  7  69999999886432              


Q ss_pred             CCCCCCCcccEEEECCh------hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        242 GNSTGGTAVARVIMNLP------ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~npP------~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                           ...||.|+++.+      .....++..+.. |+++        |.+.+.++
T Consensus       182 -----~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~  224 (286)
T 3m70_A          182 -----QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVG--------GYNLIVAA  224 (286)
T ss_dssp             -----CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEE--------EEEEEEEE
T ss_pred             -----cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCC--------cEEEEEEe
Confidence                 145999999753      223467777766 7765        77555444

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.26  E-value=1e-11  Score=111.50  Aligned_cols=109  Identities=14%  Similarity=0.090  Sum_probs=86.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ..++.+|||+|||+|..++.+|+.   +++|+++|+++.+++.|++|++.++  +.++++++.+|+.+.+.....+.   
T Consensus        58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~gda~~~l~~~~~~~---  132 (242)
T 3r3h_A           58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK--QEHKIKLRLGPALDTLHSLLNEG---  132 (242)
T ss_dssp             HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT--CTTTEEEEESCHHHHHHHHHHHH---
T ss_pred             hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHHHhhcc---
Confidence            457789999999999999999983   6799999999999999999999999  87789999999998876543210   


Q ss_pred             hcccCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                               ....||.|++|.+.. ...+++.+.. |+++        |++.+...
T Consensus       133 ---------~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG--------G~lv~d~~  171 (242)
T 3r3h_A          133 ---------GEHQFDFIFIDADKTNYLNYYELALKLVTPK--------GLIAIDNI  171 (242)
T ss_dssp             ---------CSSCEEEEEEESCGGGHHHHHHHHHHHEEEE--------EEEEEECS
T ss_pred             ---------CCCCEeEEEEcCChHHhHHHHHHHHHhcCCC--------eEEEEECC
Confidence                     013599999998754 3456666655 7765        78777543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.26  E-value=8.3e-11  Score=105.15  Aligned_cols=134  Identities=19%  Similarity=0.171  Sum_probs=91.9

Q ss_pred             EEccCCCeEEEEEeCCeEEEEeccceeecCcChHHHHHHHhh-----ccCCCEEEEEcCCCchhHHHHHhc---CCEEEE
Q psy16898        118 LLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKE-----VREGDLVLDVFAGVGPFSIPAARR---GAIVAA  189 (324)
Q Consensus       118 ~l~G~~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~~~~~-----~~~g~~VLDl~~G~G~~al~~a~~---g~~V~a  189 (324)
                      -++|+.    ..+..|..|+.      ||+.-+.--..++..     +++|++|||+|||+|.++..+|+.   ..+|+|
T Consensus        38 ~vyge~----~~~~~~~e~r~------w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~a  107 (233)
T 4df3_A           38 RVYGER----IFRYNGEEYRE------WNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYG  107 (233)
T ss_dssp             CSSSCC----EEEETTEEEEE------CCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEE
T ss_pred             cccCce----EEEcCCceeee------ECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEE
Confidence            346664    23445655554      777654322223321     579999999999999999999984   359999


Q ss_pred             EeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh--hHHHHHH
Q psy16898        190 NDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT--AVEYVRY  267 (324)
Q Consensus       190 vD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~--a~~~l~~  267 (324)
                      +|+++.|++.++++++..+     |+..+.+|+.+......               ....+|.|++|++..  +..++..
T Consensus       108 vD~s~~~~~~l~~~a~~~~-----ni~~V~~d~~~p~~~~~---------------~~~~vDvVf~d~~~~~~~~~~l~~  167 (233)
T 4df3_A          108 VEFAPRVMRDLLTVVRDRR-----NIFPILGDARFPEKYRH---------------LVEGVDGLYADVAQPEQAAIVVRN  167 (233)
T ss_dssp             EECCHHHHHHHHHHSTTCT-----TEEEEESCTTCGGGGTT---------------TCCCEEEEEECCCCTTHHHHHHHH
T ss_pred             EeCCHHHHHHHHHhhHhhc-----CeeEEEEeccCcccccc---------------ccceEEEEEEeccCChhHHHHHHH
Confidence            9999999999998876433     79999999875322110               024599999987653  3456666


Q ss_pred             Hhc-cchhhcCCCCCCCEEEEEE
Q psy16898        268 LKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       268 ~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                      +.. ||++        |.+.+..
T Consensus       168 ~~r~LKpG--------G~lvI~i  182 (233)
T 4df3_A          168 ARFFLRDG--------GYMLMAI  182 (233)
T ss_dssp             HHHHEEEE--------EEEEEEE
T ss_pred             HHHhccCC--------CEEEEEE
Confidence            655 8876        7766543

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.25  E-value=4.1e-11  Score=114.26  Aligned_cols=104  Identities=16%  Similarity=0.078  Sum_probs=79.1

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      ++.+|||+| |+|.+++.+++.+  .+|+++|+++.+++.|++|++.++  +. +++++++|+.+.+....         
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g--~~-~v~~~~~D~~~~l~~~~---------  238 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIG--YE-DIEIFTFDLRKPLPDYA---------  238 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHT--CC-CEEEECCCTTSCCCTTT---------
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CC-CEEEEEChhhhhchhhc---------
Confidence            688999999 9999999999875  499999999999999999999999  87 89999999987322100         


Q ss_pred             cCCCCCCCCcccEEEECChhhhH---HHHHHHhccchhhcCCCCCCCEEEEEEccc
Q psy16898        240 SEGNSTGGTAVARVIMNLPATAV---EYVRYLKVLTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a~---~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                             ...||.|++|||....   .++..+..       .+++||.+.++++..
T Consensus       239 -------~~~fD~Vi~~~p~~~~~~~~~l~~~~~-------~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          239 -------LHKFDTFITDPPETLEAIRAFVGRGIA-------TLKGPRCAGYFGITR  280 (373)
T ss_dssp             -------SSCBSEEEECCCSSHHHHHHHHHHHHH-------TBCSTTCEEEEEECT
T ss_pred             -------cCCccEEEECCCCchHHHHHHHHHHHH-------HcccCCeEEEEEEec
Confidence                   1359999999998543   33333333       233458555555554

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.24  E-value=1.3e-11  Score=110.56  Aligned_cols=102  Identities=19%  Similarity=0.212  Sum_probs=83.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHh-CCCCCCCeEEEeccHHHH-HHHHHHHhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLN-ERQVKTPISATQKDARDF-LQTDARAHL  234 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n-~~~l~~~v~~~~~D~~~~-~~~~~~~~~  234 (324)
                      +.++.+|||+|||+|.+++.+++.   +.+|+++|+++.+++.|++|++.+ +  .. ++++.++|+.+. +.       
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g--~~-~v~~~~~d~~~~~~~-------  163 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ--VE-NVRFHLGKLEEAELE-------  163 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC--CC-CEEEEESCGGGCCCC-------
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC--CC-CEEEEECchhhcCCC-------
Confidence            468899999999999999999986   579999999999999999999998 7  54 799999998764 11       


Q ss_pred             hhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                  ...||.|++|+|.. ..++..+.. |+++        |.+.+++...
T Consensus       164 ------------~~~~D~v~~~~~~~-~~~l~~~~~~L~~g--------G~l~~~~~~~  201 (258)
T 2pwy_A          164 ------------EAAYDGVALDLMEP-WKVLEKAALALKPD--------RFLVAYLPNI  201 (258)
T ss_dssp             ------------TTCEEEEEEESSCG-GGGHHHHHHHEEEE--------EEEEEEESCH
T ss_pred             ------------CCCcCEEEECCcCH-HHHHHHHHHhCCCC--------CEEEEEeCCH
Confidence                        13499999999873 456666655 7765        8888887654

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.24  E-value=4e-11  Score=105.38  Aligned_cols=101  Identities=15%  Similarity=0.063  Sum_probs=73.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.+|.+|||+|||+|.++..+++..  .+|+|+|+|+.|++.+.++++...     ++.++.+|+.+......       
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~-----~v~~~~~d~~~~~~~~~-------  122 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN-----NIIPLLFDASKPWKYSG-------  122 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS-----SEEEECSCTTCGGGTTT-------
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCC-----CeEEEEcCCCCchhhcc-------
Confidence            4588999999999999999999853  599999999999988877776432     68899999875311000       


Q ss_pred             cccCCCCCCCCcccEEEECChhh--hHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPAT--AVEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~--a~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                              ....||.|++|.+..  ...++..+.. |+++        |.+.+.
T Consensus       123 --------~~~~fD~V~~~~~~~~~~~~~l~~~~r~Lkpg--------G~l~i~  160 (210)
T 1nt2_A          123 --------IVEKVDLIYQDIAQKNQIEILKANAEFFLKEK--------GEVVIM  160 (210)
T ss_dssp             --------TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEE--------EEEEEE
T ss_pred             --------cccceeEEEEeccChhHHHHHHHHHHHHhCCC--------CEEEEE
Confidence                    013599999996543  2234565655 7876        776655

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.24  E-value=6.1e-11  Score=113.82  Aligned_cols=107  Identities=14%  Similarity=0.071  Sum_probs=77.2

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh-cCC-EEEEEeCCHHHHHHHHHHH-------HHhCCCCC-CCeEEEeccHHHHHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR-RGA-IVAANDLNPDSYAWLQASI-------RLNERQVK-TPISATQKDARDFLQTD  229 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~-~g~-~V~avD~~~~a~~~a~~N~-------~~n~~~l~-~~v~~~~~D~~~~~~~~  229 (324)
                      +.+|++|||||||+|.+++.+|+ .++ +|+|||+++.+++.|++|+       +.++  +. ++++++++|+.+.....
T Consensus       171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~G--l~~~rVefi~GD~~~lp~~d  248 (438)
T 3uwp_A          171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG--KKHAEYTLERGDFLSEEWRE  248 (438)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHT--BCCCEEEEEECCTTSHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC--CCCCCeEEEECcccCCcccc
Confidence            56899999999999999999986 466 6999999999999999875       3456  63 58999999998865432


Q ss_pred             HHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhccchhhcCCCCCCCEEEEE
Q psy16898        230 ARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~l~~~~~~~~~~~g~vh~y  288 (324)
                      ..                ..||+|++|++.+..+...++...    ...+++||.|.+.
T Consensus       249 ~~----------------~~aDVVf~Nn~~F~pdl~~aL~Ei----~RvLKPGGrIVss  287 (438)
T 3uwp_A          249 RI----------------ANTSVIFVNNFAFGPEVDHQLKER----FANMKEGGRIVSS  287 (438)
T ss_dssp             HH----------------HTCSEEEECCTTCCHHHHHHHHHH----HTTSCTTCEEEES
T ss_pred             cc----------------CCccEEEEcccccCchHHHHHHHH----HHcCCCCcEEEEe
Confidence            11                139999999876543333333220    0123445777766

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.24  E-value=1.7e-11  Score=109.16  Aligned_cols=104  Identities=11%  Similarity=0.067  Sum_probs=83.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +.++.+|||+|||+|.+++.+++.+.+|+++|+++.+++.|++|+..++  +..+++++.+|+.+....           
T Consensus        89 ~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~-----------  155 (248)
T 2yvl_A           89 LNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFN--LGKNVKFFNVDFKDAEVP-----------  155 (248)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTT--CCTTEEEECSCTTTSCCC-----------
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcC--CCCcEEEEEcChhhcccC-----------
Confidence            4578999999999999999999987799999999999999999999988  856899999998763200           


Q ss_pred             cCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                             ...||.|++|+|. ...+++.+.. ++++        |.+.+++...
T Consensus       156 -------~~~~D~v~~~~~~-~~~~l~~~~~~L~~g--------G~l~~~~~~~  193 (248)
T 2yvl_A          156 -------EGIFHAAFVDVRE-PWHYLEKVHKSLMEG--------APVGFLLPTA  193 (248)
T ss_dssp             -------TTCBSEEEECSSC-GGGGHHHHHHHBCTT--------CEEEEEESSH
T ss_pred             -------CCcccEEEECCcC-HHHHHHHHHHHcCCC--------CEEEEEeCCH
Confidence                   1349999999985 3345555555 6654        8888777644

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.24  E-value=6.1e-11  Score=103.36  Aligned_cols=101  Identities=15%  Similarity=0.143  Sum_probs=82.0

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ..++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.|++|++.++  +.++++++++|+.+++...       
T Consensus        54 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~-------  124 (210)
T 3c3p_A           54 IKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG--LIDRVELQVGDPLGIAAGQ-------  124 (210)
T ss_dssp             HHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS--GGGGEEEEESCHHHHHTTC-------
T ss_pred             hhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC--CCceEEEEEecHHHHhccC-------
Confidence            346789999999999999999985   6799999999999999999999998  8767999999998865431       


Q ss_pred             hcccCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                                .. ||.|++|.+.. ...+++.+.. |+++        |++.+.
T Consensus       125 ----------~~-fD~v~~~~~~~~~~~~l~~~~~~Lkpg--------G~lv~~  159 (210)
T 3c3p_A          125 ----------RD-IDILFMDCDVFNGADVLERMNRCLAKN--------ALLIAV  159 (210)
T ss_dssp             ----------CS-EEEEEEETTTSCHHHHHHHHGGGEEEE--------EEEEEE
T ss_pred             ----------CC-CCEEEEcCChhhhHHHHHHHHHhcCCC--------eEEEEE
Confidence                      24 99999997542 3456777666 7765        776664

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.23  E-value=4.8e-11  Score=107.45  Aligned_cols=108  Identities=13%  Similarity=0.078  Sum_probs=83.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ..++.+|||+|||+|..++.+|+.   +++|+++|+++.+++.|++|++.++  +.++++++.+|+.+++......... 
T Consensus        77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~~~~i~~~~gda~~~l~~l~~~~~~-  153 (247)
T 1sui_A           77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG--VDHKIDFREGPALPVLDEMIKDEKN-  153 (247)
T ss_dssp             HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHHHHHHSGGG-
T ss_pred             hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCeEEEECCHHHHHHHHHhccCC-
Confidence            456789999999999999999984   6799999999999999999999998  8768999999999887654211000 


Q ss_pred             hcccCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                                ...||.|++|.+.. ...+++.+.. |++        ||++.+.
T Consensus       154 ----------~~~fD~V~~d~~~~~~~~~l~~~~~~Lkp--------GG~lv~d  189 (247)
T 1sui_A          154 ----------HGSYDFIFVDADKDNYLNYHKRLIDLVKV--------GGVIGYD  189 (247)
T ss_dssp             ----------TTCBSEEEECSCSTTHHHHHHHHHHHBCT--------TCCEEEE
T ss_pred             ----------CCCEEEEEEcCchHHHHHHHHHHHHhCCC--------CeEEEEe
Confidence                      13599999997542 3456666655 665        4777665

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.23  E-value=4e-11  Score=111.67  Aligned_cols=85  Identities=18%  Similarity=0.158  Sum_probs=70.3

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--C-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--G-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.+|++|||+|||+|+.++.+|..  + .+|+|+|+++.+++.+++|++.++  +. +++++++|+.++......     
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g--~~-~v~~~~~D~~~~~~~~~~-----  171 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG--VS-CCELAEEDFLAVSPSDPR-----  171 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT--CC-SEEEEECCGGGSCTTCGG-----
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--CC-eEEEEeCChHhcCccccc-----
Confidence            568999999999999999999983  3 599999999999999999999999  86 799999999875321100     


Q ss_pred             hcccCCCCCCCCcccEEEECChhhhH
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATAV  262 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a~  262 (324)
                                ...||.|++|||.++.
T Consensus       172 ----------~~~fD~Vl~D~PcSg~  187 (309)
T 2b9e_A          172 ----------YHEVHYILLDPSCSGS  187 (309)
T ss_dssp             ----------GTTEEEEEECCCCCC-
T ss_pred             ----------cCCCCEEEEcCCcCCC
Confidence                      0249999999998543

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.23  E-value=1.5e-11  Score=108.83  Aligned_cols=102  Identities=12%  Similarity=0.025  Sum_probs=81.0

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      ++.+|||+|||+|.++..+++.+++|+|+|+|+.+++.|++++..++  ...+++++++|+.++..              
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~--------------  129 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSP--KAEYFSFVKEDVFTWRP--------------  129 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSG--GGGGEEEECCCTTTCCC--------------
T ss_pred             CCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccC--CCcceEEEECchhcCCC--------------
Confidence            45599999999999999999988899999999999999999998755  44579999999886431              


Q ss_pred             CCCCCCCcccEEEEC------ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        242 GNSTGGTAVARVIMN------LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~n------pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                           ...||.|+++      +|.....++..+.. |+++        |.+.+..+..
T Consensus       130 -----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~~  174 (235)
T 3lcc_A          130 -----TELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPD--------GELITLMYPI  174 (235)
T ss_dssp             -----SSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEE--------EEEEEEECCC
T ss_pred             -----CCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCC--------cEEEEEEecc
Confidence                 1359999985      23344567777766 7775        7777766654

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.23  E-value=1e-10  Score=104.40  Aligned_cols=109  Identities=14%  Similarity=0.069  Sum_probs=85.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ..++.+|||+|||+|..++.+|+.   +.+|+++|+++.+++.|++|++.++  +.++++++.+|+.+++.....+.   
T Consensus        68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~gda~~~l~~l~~~~---  142 (237)
T 3c3y_A           68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG--VEHKINFIESDAMLALDNLLQGQ---  142 (237)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHHHHHHST---
T ss_pred             hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHHHHhcc---
Confidence            456789999999999999999984   6799999999999999999999998  87689999999999876543210   


Q ss_pred             hcccCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                              .....||.|++|.+.. ...+++.+.. |+++        |++.+..
T Consensus       143 --------~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pG--------G~lv~d~  181 (237)
T 3c3y_A          143 --------ESEGSYDFGFVDADKPNYIKYHERLMKLVKVG--------GIVAYDN  181 (237)
T ss_dssp             --------TCTTCEEEEEECSCGGGHHHHHHHHHHHEEEE--------EEEEEEC
T ss_pred             --------CCCCCcCEEEECCchHHHHHHHHHHHHhcCCC--------eEEEEec
Confidence                    0013599999997653 3456777666 6765        7777664

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.23  E-value=9.6e-11  Score=104.17  Aligned_cols=109  Identities=15%  Similarity=0.077  Sum_probs=84.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ..++.+|||+|||+|..++.+++.   +++|+++|+|+.+++.|++|++.++  +.++++++.+|+.+.+.......   
T Consensus        70 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~~d~~~~l~~l~~~~---  144 (232)
T 3cbg_A           70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG--VAEKISLRLGPALATLEQLTQGK---  144 (232)
T ss_dssp             HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHHHHHHTSS---
T ss_pred             hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHHHHhcC---
Confidence            457789999999999999999984   5699999999999999999999998  87689999999988766532100   


Q ss_pred             hcccCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                               ....||.|++|.+.. ...+++.+.. |+++        |++.+...
T Consensus       145 ---------~~~~fD~V~~d~~~~~~~~~l~~~~~~Lkpg--------G~lv~~~~  183 (232)
T 3cbg_A          145 ---------PLPEFDLIFIDADKRNYPRYYEIGLNLLRRG--------GLMVIDNV  183 (232)
T ss_dssp             ---------SCCCEEEEEECSCGGGHHHHHHHHHHTEEEE--------EEEEEECT
T ss_pred             ---------CCCCcCEEEECCCHHHHHHHHHHHHHHcCCC--------eEEEEeCC
Confidence                     003599999997642 3456666655 6665        77776543

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.23  E-value=2.9e-11  Score=104.49  Aligned_cols=72  Identities=24%  Similarity=0.226  Sum_probs=61.3

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      ..++.+|||+|||+|.+++.+++.|. +|+|+|+|+.+++.|++|+.        +++++++|+.++.            
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~--------~~~~~~~d~~~~~------------  108 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG--------GVNFMVADVSEIS------------  108 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT--------TSEEEECCGGGCC------------
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC--------CCEEEECcHHHCC------------
Confidence            34788999999999999999999876 89999999999999998765        3689999988741            


Q ss_pred             ccCCCCCCCCcccEEEECChhh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                               ..||.|++|||..
T Consensus       109 ---------~~~D~v~~~~p~~  121 (200)
T 1ne2_A          109 ---------GKYDTWIMNPPFG  121 (200)
T ss_dssp             ---------CCEEEEEECCCC-
T ss_pred             ---------CCeeEEEECCCch
Confidence                     2399999999953

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.22  E-value=4.1e-11  Score=106.16  Aligned_cols=104  Identities=9%  Similarity=0.066  Sum_probs=83.6

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      ..++.+|||+|||+|.+++.+++.  +.+|+++|+++.+++.|++|++.++  +.++++++++|+.+.+.....      
T Consensus        52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~------  123 (233)
T 2gpy_A           52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALG--LESRIELLFGDALQLGEKLEL------  123 (233)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCGGGSHHHHTT------
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECCHHHHHHhccc------
Confidence            457889999999999999999986  6799999999999999999999998  866899999999886543210      


Q ss_pred             cccCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                               ...||.|++|.|.. ...+++.+.. |+++        |.+.+.
T Consensus       124 ---------~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg--------G~lv~~  159 (233)
T 2gpy_A          124 ---------YPLFDVLFIDAAKGQYRRFFDMYSPMVRPG--------GLILSD  159 (233)
T ss_dssp             ---------SCCEEEEEEEGGGSCHHHHHHHHGGGEEEE--------EEEEEE
T ss_pred             ---------CCCccEEEECCCHHHHHHHHHHHHHHcCCC--------eEEEEE
Confidence                     13499999998763 3456777666 7765        777665

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.22  E-value=4.7e-11  Score=105.23  Aligned_cols=101  Identities=15%  Similarity=0.094  Sum_probs=76.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-C--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-G--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.++.+|||+|||+|.+++.+++. |  .+|+|+|+|+.+++.+++|++.+.     +++++++|+.+......      
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~-----~v~~~~~d~~~~~~~~~------  139 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR-----NIVPILGDATKPEEYRA------  139 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT-----TEEEEECCTTCGGGGTT------
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccC-----CCEEEEccCCCcchhhc------
Confidence            457889999999999999999975 3  699999999999999999987543     79999999876321000      


Q ss_pred             hcccCCCCCCCCcccEEEECChhhh--HHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATA--VEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a--~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                               ....||.|++|+|...  ..++..+.. |+++        |.+.+.
T Consensus       140 ---------~~~~~D~v~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~  177 (227)
T 1g8a_A          140 ---------LVPKVDVIFEDVAQPTQAKILIDNAEVYLKRG--------GYGMIA  177 (227)
T ss_dssp             ---------TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEE--------EEEEEE
T ss_pred             ---------ccCCceEEEECCCCHhHHHHHHHHHHHhcCCC--------CEEEEE
Confidence                     0135999999987532  244666655 7775        777766

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.22  E-value=6.9e-11  Score=101.21  Aligned_cols=99  Identities=15%  Similarity=0.077  Sum_probs=79.1

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .++.+|||+|||+|.++..+++.|.+|+|+|+|+.+++.+++++..++  ++ +++++++|+.+...             
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~-~~~~~~~d~~~~~~-------------   94 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIEN--LD-NLHTRVVDLNNLTF-------------   94 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT--CT-TEEEEECCGGGCCC-------------
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCC--CC-CcEEEEcchhhCCC-------------
Confidence            367899999999999999999998999999999999999999999988  75 69999999876421             


Q ss_pred             CCCCCCCCcccEEEECCh------hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        241 EGNSTGGTAVARVIMNLP------ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP------~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                            ...||.|+++.+      .....++..+.. |+++        |.+.+.+
T Consensus        95 ------~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~g--------G~l~~~~  136 (199)
T 2xvm_A           95 ------DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG--------GYNLIVA  136 (199)
T ss_dssp             ------CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEE--------EEEEEEE
T ss_pred             ------CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCC--------eEEEEEE
Confidence                  135999998732      234556776666 7765        7655443

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.22  E-value=1.1e-11  Score=118.42  Aligned_cols=92  Identities=21%  Similarity=0.199  Sum_probs=75.1

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .+|++|||+|||+|.+++.+|+.|+ +|+|||.|+ +++.|+++++.|+  +.++|+++++|+.++..            
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~--~~~~i~~i~~~~~~~~l------------  146 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNG--LEDRVHVLPGPVETVEL------------  146 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTT--CTTTEEEEESCTTTCCC------------
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcC--CCceEEEEeeeeeeecC------------
Confidence            4799999999999999999999998 999999996 7899999999999  98899999999887421            


Q ss_pred             cCCCCCCCCcccEEEECChhh-------hHHHHHHHhc-cchh
Q psy16898        240 SEGNSTGGTAVARVIMNLPAT-------AVEYVRYLKV-LTRE  274 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~-------a~~~l~~~~~-l~~~  274 (324)
                             +.++|+||+++-..       -..++.+... |+++
T Consensus       147 -------pe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~  182 (376)
T 4hc4_A          147 -------PEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEG  182 (376)
T ss_dssp             -------SSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEE
T ss_pred             -------CccccEEEeecccccccccchhhhHHHHHHhhCCCC
Confidence                   24599999865432       1245655555 7776

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.22  E-value=9.3e-11  Score=108.21  Aligned_cols=101  Identities=15%  Similarity=0.133  Sum_probs=78.5

Q ss_pred             hhccCCCEEEEEcCCCchhH-HHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        158 KEVREGDLVLDVFAGVGPFS-IPAAR-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       158 ~~~~~g~~VLDl~~G~G~~a-l~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      ..+.+|++|||+|||+|+++ +.+|+ .|++|+|+|+|+.+++.|++|++..+  + ++++++++|+.++. .       
T Consensus       118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~g--l-~~v~~v~gDa~~l~-d-------  186 (298)
T 3fpf_A          118 GRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLG--V-DGVNVITGDETVID-G-------  186 (298)
T ss_dssp             TTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHT--C-CSEEEEESCGGGGG-G-------
T ss_pred             cCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcC--C-CCeEEEECchhhCC-C-------
Confidence            45789999999999999876 55566 58899999999999999999999999  8 59999999998752 1       


Q ss_pred             hhcccCCCCCCCCcccEEEECChh-hhHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLPA-TAVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP~-~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                                  ..||+|+++--. ....+++.+.. |+++        |.+.+-.
T Consensus       187 ------------~~FDvV~~~a~~~d~~~~l~el~r~LkPG--------G~Lvv~~  222 (298)
T 3fpf_A          187 ------------LEFDVLMVAALAEPKRRVFRNIHRYVDTE--------TRIIYRT  222 (298)
T ss_dssp             ------------CCCSEEEECTTCSCHHHHHHHHHHHCCTT--------CEEEEEE
T ss_pred             ------------CCcCEEEECCCccCHHHHHHHHHHHcCCC--------cEEEEEc
Confidence                        349999986321 12356666655 7765        7776554

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.22  E-value=8e-11  Score=102.96  Aligned_cols=94  Identities=11%  Similarity=0.054  Sum_probs=71.9

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCC----CeEEEeccHHHHHHHHHHHhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVKT----PISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~----~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      .++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.|++++..++  +.+    +++++++|+......      
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~v~~~~~d~~~~~~~------   99 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDR--LPEMQRKRISLFQSSLVYRDKR------   99 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGG--SCHHHHTTEEEEECCSSSCCGG------
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhc--cccccCcceEEEeCcccccccc------
Confidence            478899999999999999999976  599999999999999999998887  754    799999998432211      


Q ss_pred             hhhcccCCCCCCCCcccEEEEC-----Chh-hhHHHHHHHhc-cchh
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMN-----LPA-TAVEYVRYLKV-LTRE  274 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~n-----pP~-~a~~~l~~~~~-l~~~  274 (324)
                                  ...||.|+++     .|. ....++..+.. |+++
T Consensus       100 ------------~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg  134 (219)
T 3jwg_A          100 ------------FSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQ  134 (219)
T ss_dssp             ------------GTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCS
T ss_pred             ------------cCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCC
Confidence                        1359999985     222 12456666655 5554

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.21  E-value=5.8e-11  Score=103.94  Aligned_cols=104  Identities=20%  Similarity=0.198  Sum_probs=80.1

Q ss_pred             HhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        157 TKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       157 ~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      .+.+.++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.|++|+..++    .+++++++|+.++...        
T Consensus        33 ~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~--------  100 (227)
T 1ve3_A           33 MKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE----SNVEFIVGDARKLSFE--------  100 (227)
T ss_dssp             HHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CCCEEEECCTTSCCSC--------
T ss_pred             HHhcCCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC----CCceEEECchhcCCCC--------
Confidence            3445678899999999999999999988899999999999999999998876    2699999998763210        


Q ss_pred             hcccCCCCCCCCcccEEEECCh--hh----hHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLP--AT----AVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP--~~----a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                                ...||.|+++++  ..    ...++..+.. |+++        |.+.+..+
T Consensus       101 ----------~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~g--------G~l~~~~~  143 (227)
T 1ve3_A          101 ----------DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPS--------GKFIMYFT  143 (227)
T ss_dssp             ----------TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEE--------EEEEEEEE
T ss_pred             ----------CCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCC--------cEEEEEec
Confidence                      135999999887  32    2346666655 6665        66655443

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.21  E-value=9.4e-11  Score=105.86  Aligned_cols=104  Identities=12%  Similarity=0.057  Sum_probs=81.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.++.+|||+|||+|.+++.+++.+. +|+|+|+|+.+++.|+++++.++  ++++++++++|+.++...          
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~----------  111 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSG--LQNRVTGIVGSMDDLPFR----------  111 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTSCCCC----------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcC--CCcCcEEEEcChhhCCCC----------
Confidence            45789999999999999999999755 99999999999999999999998  877899999998764211          


Q ss_pred             ccCCCCCCCCcccEEEECChhh---hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        239 QSEGNSTGGTAVARVIMNLPAT---AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~---a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                              ...||.|+++.+-.   ...++..+.. |+++        |.+.+.++.
T Consensus       112 --------~~~fD~i~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~  152 (267)
T 3kkz_A          112 --------NEELDLIWSEGAIYNIGFERGLNEWRKYLKKG--------GYLAVSECS  152 (267)
T ss_dssp             --------TTCEEEEEESSCGGGTCHHHHHHHHGGGEEEE--------EEEEEEEEE
T ss_pred             --------CCCEEEEEEcCCceecCHHHHHHHHHHHcCCC--------CEEEEEEee
Confidence                    24599999976542   2345555555 6665        777766543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.21  E-value=5.4e-11  Score=102.63  Aligned_cols=108  Identities=20%  Similarity=0.160  Sum_probs=83.1

Q ss_pred             HHHhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898        155 RVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       155 ~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      .++..+.++ +|||+|||+|.++..+++.|++|+|+|+|+.+++.|++++..++  +  ++.++++|+.+....      
T Consensus        23 ~~~~~~~~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~--~~~~~~~d~~~~~~~------   91 (202)
T 2kw5_A           23 SVANQIPQG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKG--V--KITTVQSNLADFDIV------   91 (202)
T ss_dssp             HHHHHSCSS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHT--C--CEEEECCBTTTBSCC------
T ss_pred             HHHHhCCCC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcC--C--ceEEEEcChhhcCCC------
Confidence            345567778 99999999999999999998999999999999999999999888  5  599999998764211      


Q ss_pred             hhhcccCCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                                  ...||.|+++...    ....++..+.. |++        +|.+.+.++...
T Consensus        92 ------------~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~p--------gG~l~~~~~~~~  135 (202)
T 2kw5_A           92 ------------ADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKP--------GGVFILEGFAPE  135 (202)
T ss_dssp             ------------TTTCSEEEEECCCCCHHHHHHHHHHHHTTCCS--------SEEEEEEEECTT
T ss_pred             ------------cCCccEEEEEhhcCCHHHHHHHHHHHHHhcCC--------CcEEEEEEeccc
Confidence                        1359999987533    23445555554 444        588887776543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.20  E-value=7.8e-11  Score=109.17  Aligned_cols=106  Identities=15%  Similarity=0.020  Sum_probs=83.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.++.+|||+|||+|.+++.++++ +++|+|+|+++.+++.|++|+..++  +.++++++++|+.++...          
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~----------  182 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELR--IDDHVRSRVCNMLDTPFD----------  182 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTSCCCC----------
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCceEEEECChhcCCCC----------
Confidence            457889999999999999999997 8899999999999999999999999  877899999998764211          


Q ss_pred             ccCCCCCCCCcccEEEECChh---hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        239 QSEGNSTGGTAVARVIMNLPA---TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~---~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                              ...||.|+++-.-   ....++..+.. |+++        |.+.+.++...
T Consensus       183 --------~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~~~  225 (312)
T 3vc1_A          183 --------KGAVTASWNNESTMYVDLHDLFSEHSRFLKVG--------GRYVTITGCWN  225 (312)
T ss_dssp             --------TTCEEEEEEESCGGGSCHHHHHHHHHHHEEEE--------EEEEEEEEEEC
T ss_pred             --------CCCEeEEEECCchhhCCHHHHHHHHHHHcCCC--------cEEEEEEcccc
Confidence                    2459999885221   13456666665 7765        77776655443

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.20  E-value=3.4e-11  Score=104.69  Aligned_cols=77  Identities=13%  Similarity=0.060  Sum_probs=67.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +.++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.|++|+..++  +. +++++.+|+.+....           
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~-~v~~~~~d~~~~~~~-----------  140 (210)
T 3lbf_A           75 LTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLD--LH-NVSTRHGDGWQGWQA-----------  140 (210)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTT--CC-SEEEEESCGGGCCGG-----------
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcC--CC-ceEEEECCcccCCcc-----------
Confidence            4688999999999999999999998899999999999999999999998  87 799999999874332           


Q ss_pred             cCCCCCCCCcccEEEECC
Q psy16898        240 SEGNSTGGTAVARVIMNL  257 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~np  257 (324)
                             ...||.|+++.
T Consensus       141 -------~~~~D~i~~~~  151 (210)
T 3lbf_A          141 -------RAPFDAIIVTA  151 (210)
T ss_dssp             -------GCCEEEEEESS
T ss_pred             -------CCCccEEEEcc
Confidence                   13599999973

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.20  E-value=1.2e-10  Score=104.15  Aligned_cols=101  Identities=16%  Similarity=0.050  Sum_probs=72.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +++|++|||+|||+|.++..+|+.   ..+|+|+|+++.+++.+.+.++...     |+.++.+|+........      
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~-----nv~~i~~Da~~~~~~~~------  142 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRP-----NIFPLLADARFPQSYKS------  142 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCT-----TEEEEECCTTCGGGTTT------
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcC-----CeEEEEcccccchhhhc------
Confidence            458999999999999999999984   3499999999999877766555432     79999999875311100      


Q ss_pred             hcccCCCCCCCCcccEEEECChh--hhHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPA--TAVEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~--~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                               ....||.|++|.|.  ....+...+.. |+++        |.+.+.
T Consensus       143 ---------~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpG--------G~lvis  180 (232)
T 3id6_C          143 ---------VVENVDVLYVDIAQPDQTDIAIYNAKFFLKVN--------GDMLLV  180 (232)
T ss_dssp             ---------TCCCEEEEEECCCCTTHHHHHHHHHHHHEEEE--------EEEEEE
T ss_pred             ---------cccceEEEEecCCChhHHHHHHHHHHHhCCCC--------eEEEEE
Confidence                     01359999999654  22234455553 7775        776655

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.20  E-value=2.2e-10  Score=102.01  Aligned_cols=116  Identities=11%  Similarity=0.068  Sum_probs=83.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhh-h
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL-V  235 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~-~  235 (324)
                      ..++.+|||+|||+|.+++.+++.   +++|+++|+++.+++.|++|+..++  +.++++++.+|+.+.+........ .
T Consensus        58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~~~~~~~~~~~~  135 (239)
T 2hnk_A           58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG--LENKIFLKLGSALETLQVLIDSKSAP  135 (239)
T ss_dssp             HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHHHHHHCSSCC
T ss_pred             hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCEEEEECCHHHHHHHHHhhcccc
Confidence            457889999999999999999985   5799999999999999999999998  876799999999887654321000 0


Q ss_pred             hhcccCCCCCCC--CcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        236 RWSQSEGNSTGG--TAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       236 ~~~~~~~~~~~~--~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                      .|..    .-..  ..||.|+++.... ...+++.+.. |+++        |++.+..
T Consensus       136 ~~~~----~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg--------G~lv~~~  181 (239)
T 2hnk_A          136 SWAS----DFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPG--------GLLIADN  181 (239)
T ss_dssp             GGGT----TTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEE--------EEEEEEC
T ss_pred             cccc----cccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCC--------eEEEEEc
Confidence            0000    0000  3599999996543 2356666655 7765        7777654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.20  E-value=1.1e-10  Score=106.92  Aligned_cols=106  Identities=8%  Similarity=0.073  Sum_probs=84.2

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHH--hCCCC-CCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR-G-AIVAANDLNPDSYAWLQASIRL--NERQV-KTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~-g-~~V~avD~~~~a~~~a~~N~~~--n~~~l-~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      ..+.+|||+|||+|.++..+++. + .+|+++|+++.+++.|++|+..  ++  + ..+++++.+|+.+++...      
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~--~~~~rv~v~~~D~~~~l~~~------  145 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK--LDDPRVDVQVDDGFMHIAKS------  145 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTT--TTSTTEEEEESCSHHHHHTC------
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccc--cCCCceEEEECcHHHHHhhC------
Confidence            46789999999999999999986 4 5999999999999999999864  23  4 248999999999876541      


Q ss_pred             hhcccCCCCCCCCcccEEEECChhh--------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLPAT--------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP~~--------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                                 ...||+|++|+|..        ..+|++.+.. |+++        |++.+.+.++.
T Consensus       146 -----------~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pg--------G~lv~~~~~~~  193 (275)
T 1iy9_A          146 -----------ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED--------GIFVAQTDNPW  193 (275)
T ss_dssp             -----------CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE--------EEEEEECCCTT
T ss_pred             -----------CCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC--------cEEEEEcCCcc
Confidence                       24599999999762        2567777766 7775        88877765543

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.19  E-value=5.5e-11  Score=115.48  Aligned_cols=82  Identities=21%  Similarity=0.263  Sum_probs=69.3

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      ..+|.+|||+|||+|.+++.+++.+  .+|+|+|+++.+++.+++|++.++  +.  ++++++|+.++.....       
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g--~~--~~~~~~D~~~~~~~~~-------  312 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG--MK--ATVKQGDGRYPSQWCG-------  312 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT--CC--CEEEECCTTCTHHHHT-------
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcC--CC--eEEEeCchhhchhhcc-------
Confidence            5688999999999999999999854  699999999999999999999999  74  7999999987643211       


Q ss_pred             cccCCCCCCCCcccEEEECChhhh
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                               ...||.|++|||.++
T Consensus       313 ---------~~~fD~Vl~D~Pcsg  327 (429)
T 1sqg_A          313 ---------EQQFDRILLDAPCSA  327 (429)
T ss_dssp             ---------TCCEEEEEEECCCCC
T ss_pred             ---------cCCCCEEEEeCCCCc
Confidence                     135999999999753

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.19  E-value=6.5e-11  Score=104.93  Aligned_cols=104  Identities=14%  Similarity=0.023  Sum_probs=79.0

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.++.+|||+|||+|.++..+++.   +.+|+|+|+|+.|++.+.++++.+.     +++++++|+.+...-...     
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~-----~v~~~~~d~~~~~~~~~~-----  144 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRT-----NIIPVIEDARHPHKYRML-----  144 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCT-----TEEEECSCTTCGGGGGGG-----
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccC-----CeEEEEcccCChhhhccc-----
Confidence            457889999999999999999985   3699999999999999999998764     699999999863210000     


Q ss_pred             hcccCCCCCCCCcccEEEECChhhh--HHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATA--VEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a--~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                                ...||.|++|+|...  ..++..+.. |+++        |++.+.+..
T Consensus       145 ----------~~~~D~V~~~~~~~~~~~~~~~~~~~~Lkpg--------G~l~i~~~~  184 (233)
T 2ipx_A          145 ----------IAMVDVIFADVAQPDQTRIVALNAHTFLRNG--------GHFVISIKA  184 (233)
T ss_dssp             ----------CCCEEEEEECCCCTTHHHHHHHHHHHHEEEE--------EEEEEEEEH
T ss_pred             ----------CCcEEEEEEcCCCccHHHHHHHHHHHHcCCC--------eEEEEEEcc
Confidence                      135999999998432  335654444 7775        888776554

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.19  E-value=4.6e-11  Score=103.48  Aligned_cols=98  Identities=18%  Similarity=0.164  Sum_probs=79.1

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      ++.+|||+|||+|.+++.+++.  +.+|+++|+|+.+++.+++|+..++  +. +++++++|+.++..            
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~-~v~~~~~d~~~~~~------------  129 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK--LE-NIEPVQSRVEEFPS------------  129 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT--CS-SEEEEECCTTTSCC------------
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC--CC-CeEEEecchhhCCc------------
Confidence            5789999999999999999985  6799999999999999999999998  87 59999999876431            


Q ss_pred             cCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                             ...||.|+++.-.....++..+.. ++++        |++.+..
T Consensus       130 -------~~~~D~i~~~~~~~~~~~l~~~~~~L~~g--------G~l~~~~  165 (207)
T 1jsx_A          130 -------EPPFDGVISRAFASLNDMVSWCHHLPGEQ--------GRFYALK  165 (207)
T ss_dssp             -------CSCEEEEECSCSSSHHHHHHHHTTSEEEE--------EEEEEEE
T ss_pred             -------cCCcCEEEEeccCCHHHHHHHHHHhcCCC--------cEEEEEe
Confidence                   135999999854434567777766 6665        7776653

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.19  E-value=9.6e-11  Score=104.69  Aligned_cols=106  Identities=14%  Similarity=0.096  Sum_probs=81.7

Q ss_pred             HHHhh--ccCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHH
Q psy16898        155 RVTKE--VREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDAR  231 (324)
Q Consensus       155 ~~~~~--~~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~  231 (324)
                      .+++.  +.++.+|||+|||+|.++..+++. +++|+|+|+|+.+++.|+++++.++  +.++++++++|+.+...    
T Consensus        27 ~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~v~~~~~d~~~~~~----  100 (256)
T 1nkv_A           27 TLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELG--VSERVHFIHNDAAGYVA----  100 (256)
T ss_dssp             HHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCCTTCCC----
T ss_pred             HHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEECChHhCCc----
Confidence            34443  458899999999999999999985 7799999999999999999999988  87689999999876432    


Q ss_pred             HhhhhhcccCCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        232 AHLVRWSQSEGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                                     ...||+|++...-    ....++..+.. |+++        |.+.+..
T Consensus       101 ---------------~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lkpg--------G~l~~~~  140 (256)
T 1nkv_A          101 ---------------NEKCDVAACVGATWIAGGFAGAEELLAQSLKPG--------GIMLIGE  140 (256)
T ss_dssp             ---------------SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE--------EEEEEEE
T ss_pred             ---------------CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCC--------eEEEEec
Confidence                           1359999984211    13456666666 7765        7766553

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.19  E-value=1.1e-10  Score=101.93  Aligned_cols=94  Identities=11%  Similarity=-0.011  Sum_probs=72.0

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCC----CeEEEeccHHHHHHHHHHHhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVKT----PISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~----~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      .++.+|||+|||+|.++..+++.+  ++|+|+|+|+.+++.|++|+..++  +.+    +++++++|+......      
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~v~~~~~d~~~~~~~------   99 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLR--LPRNQWERLQLIQGALTYQDKR------   99 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCC--CCHHHHTTEEEEECCTTSCCGG------
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhc--CCcccCcceEEEeCCccccccc------
Confidence            477899999999999999999965  599999999999999999998887  753    799999997432111      


Q ss_pred             hhhcccCCCCCCCCcccEEEECC-----hh-hhHHHHHHHhc-cchh
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNL-----PA-TAVEYVRYLKV-LTRE  274 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~np-----P~-~a~~~l~~~~~-l~~~  274 (324)
                                  ...||.|+++-     |. ....++..+.. |+++
T Consensus       100 ------------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg  134 (217)
T 3jwh_A          100 ------------FHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPK  134 (217)
T ss_dssp             ------------GCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCS
T ss_pred             ------------CCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence                        13599999853     22 12456666655 5554

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.19  E-value=1.1e-10  Score=108.54  Aligned_cols=106  Identities=14%  Similarity=0.114  Sum_probs=82.1

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHH--hCCCC-CCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRL--NERQV-KTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~--n~~~l-~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      .++.+|||+|||+|.++..+++..  .+|+++|+++.+++.|++|+..  ++  + ..+++++.+|+.+++...      
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~--~~~~rv~v~~~Da~~~l~~~------  165 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIG--YSSSKLTLHVGDGFEFMKQN------  165 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG--GGCTTEEEEESCHHHHHHTC------
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcc--cCCCcEEEEECcHHHHHhhC------
Confidence            467899999999999999999863  5999999999999999999875  34  4 348999999999876531      


Q ss_pred             hhcccCCCCCCCCcccEEEECChhh--------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLPAT--------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP~~--------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                                 ...||+|++|+|..        ..+|++.+.. |+++        |++.+...+..
T Consensus       166 -----------~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg--------G~lv~~~~~~~  213 (304)
T 2o07_A          166 -----------QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKED--------GVLCCQGECQW  213 (304)
T ss_dssp             -----------SSCEEEEEEECC-----------CHHHHHHHHHEEEE--------EEEEEEEECTT
T ss_pred             -----------CCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCC--------eEEEEecCCcc
Confidence                       24599999998862        1346666655 7765        88887765543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.18  E-value=3.5e-11  Score=109.37  Aligned_cols=105  Identities=18%  Similarity=0.189  Sum_probs=84.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHh--CCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLN--ERQVKTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n--~~~l~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      +.++.+|||+|||+|.+++.+++.   +.+|+++|+++.+++.|++|+..+  +  +.++++++++|+.+....      
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~--~~~~v~~~~~d~~~~~~~------  168 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ--PPDNWRLVVSDLADSELP------  168 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS--CCTTEEEECSCGGGCCCC------
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC--CCCcEEEEECchHhcCCC------
Confidence            568899999999999999999985   569999999999999999999887  3  445899999998764211      


Q ss_pred             hhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                                  ...||.|++|+|. ...++..+.. |+++        |.+.+++....
T Consensus       169 ------------~~~~D~v~~~~~~-~~~~l~~~~~~L~pg--------G~l~~~~~~~~  207 (280)
T 1i9g_A          169 ------------DGSVDRAVLDMLA-PWEVLDAVSRLLVAG--------GVLMVYVATVT  207 (280)
T ss_dssp             ------------TTCEEEEEEESSC-GGGGHHHHHHHEEEE--------EEEEEEESSHH
T ss_pred             ------------CCceeEEEECCcC-HHHHHHHHHHhCCCC--------CEEEEEeCCHH
Confidence                        1359999999986 3456666665 7765        88888876653

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.18  E-value=2.2e-11  Score=110.44  Aligned_cols=86  Identities=20%  Similarity=0.267  Sum_probs=68.2

Q ss_pred             HHHhh--ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898        155 RVTKE--VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA  232 (324)
Q Consensus       155 ~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~  232 (324)
                      ++++.  +.++++|||+|||+|.++..+++++++|+|+|+++.+++.+++++...     ++++++++|+.++...... 
T Consensus        20 ~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~-----~~v~~i~~D~~~~~~~~~~-   93 (255)
T 3tqs_A           20 KIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQ-----KNITIYQNDALQFDFSSVK-   93 (255)
T ss_dssp             HHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTC-----TTEEEEESCTTTCCGGGSC-
T ss_pred             HHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhC-----CCcEEEEcchHhCCHHHhc-
Confidence            34443  457899999999999999999999999999999999999999998642     2799999999876322100 


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                   .+..|| ||.|||+.
T Consensus        94 -------------~~~~~~-vv~NlPY~  107 (255)
T 3tqs_A           94 -------------TDKPLR-VVGNLPYN  107 (255)
T ss_dssp             -------------CSSCEE-EEEECCHH
T ss_pred             -------------cCCCeE-EEecCCcc
Confidence                         012377 99999995

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.18  E-value=7.7e-11  Score=115.18  Aligned_cols=83  Identities=22%  Similarity=0.291  Sum_probs=69.6

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh--cC-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR--RG-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~--~g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.+|++|||+|||+|.+++.++.  .+ .+|+|+|+++.+++.+++|++.++  +. +++++++|+.++....       
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g--~~-~v~~~~~D~~~~~~~~-------  326 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG--IK-IVKPLVKDARKAPEII-------  326 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTT--CC-SEEEECSCTTCCSSSS-------
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC--CC-cEEEEEcChhhcchhh-------
Confidence            56889999999999999999998  34 699999999999999999999999  86 7999999987642110       


Q ss_pred             hcccCCCCCCCCcccEEEECChhhh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                               ....||.|++|||.++
T Consensus       327 ---------~~~~fD~Vl~D~Pcsg  342 (450)
T 2yxl_A          327 ---------GEEVADKVLLDAPCTS  342 (450)
T ss_dssp             ---------CSSCEEEEEEECCCCC
T ss_pred             ---------ccCCCCEEEEcCCCCC
Confidence                     0135999999999853

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.18  E-value=1.3e-10  Score=107.79  Aligned_cols=104  Identities=13%  Similarity=0.117  Sum_probs=83.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.++.+|||+|||+|.++..+++. |++|+|+|+|+.+++.|++++..++  +.++++++.+|+.++.            
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~------------  153 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASID--TNRSRQVLLQGWEDFA------------  153 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCGGGCC------------
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChHHCC------------
Confidence            357889999999999999999987 8899999999999999999999888  7768999999987641            


Q ss_pred             ccCCCCCCCCcccEEEEC-----Ch-hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCC
Q psy16898        239 QSEGNSTGGTAVARVIMN-----LP-ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKM  294 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~n-----pP-~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~  294 (324)
                               ..||+|++.     .| .....++..+.. |++        ||.+.+..+....
T Consensus       154 ---------~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp--------gG~l~~~~~~~~~  199 (318)
T 2fk8_A          154 ---------EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPA--------DGRMTVQSSVSYH  199 (318)
T ss_dssp             ---------CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCT--------TCEEEEEEEECCC
T ss_pred             ---------CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCC--------CcEEEEEEeccCC
Confidence                     249999987     32 234556666655 665        4888877776654

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.18  E-value=5.9e-11  Score=110.59  Aligned_cols=114  Identities=11%  Similarity=0.041  Sum_probs=81.5

Q ss_pred             EeccceeecCcChHHHHHHHhh--ccCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCC
Q psy16898        138 MDFSKVYWNSRLSTEHERVTKE--VREGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVK  212 (324)
Q Consensus       138 id~~~~f~~~r~~~e~~~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~  212 (324)
                      ++...||+..........+++.  +.++.+|||+|||+|.+++.+++.+   .+|+++|+|+.+++.|++|++.++  +.
T Consensus        49 l~~~~f~q~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g--~~  126 (317)
T 1dl5_A           49 YDDGEEYSTSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG--IE  126 (317)
T ss_dssp             EECSSCEEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT--CC
T ss_pred             ccCCCcceeccCHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC--CC
Confidence            3444455443322223344443  4688999999999999999999854   369999999999999999999998  87


Q ss_pred             CCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchh
Q psy16898        213 TPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       213 ~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~  274 (324)
                       +++++++|+.+.+..                  ...||.|+++.+....  .+.+.. |+++
T Consensus       127 -~v~~~~~d~~~~~~~------------------~~~fD~Iv~~~~~~~~--~~~~~~~Lkpg  168 (317)
T 1dl5_A          127 -NVIFVCGDGYYGVPE------------------FSPYDVIFVTVGVDEV--PETWFTQLKEG  168 (317)
T ss_dssp             -SEEEEESCGGGCCGG------------------GCCEEEEEECSBBSCC--CHHHHHHEEEE
T ss_pred             -CeEEEECChhhcccc------------------CCCeEEEEEcCCHHHH--HHHHHHhcCCC
Confidence             699999999874332                  1349999999775321  133333 6665

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.18  E-value=1.2e-10  Score=107.66  Aligned_cols=106  Identities=8%  Similarity=0.015  Sum_probs=81.2

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHH--hCCCC-CCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR-G-AIVAANDLNPDSYAWLQASIRL--NERQV-KTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~-g-~~V~avD~~~~a~~~a~~N~~~--n~~~l-~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      ..+.+|||+|||+|.++..+++. + .+|+++|+++.+++.|++|+..  ++  + ..+++++.+|+.+++...      
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~--~~~~~v~~~~~D~~~~l~~~------  160 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCG--FDDPRAEIVIANGAEYVRKF------  160 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGG--GGCTTEEEEESCHHHHGGGC------
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccc--cCCCceEEEECcHHHHHhhC------
Confidence            46689999999999999999986 3 5999999999999999999865  33  4 248999999999876431      


Q ss_pred             hhcccCCCCCCCCcccEEEECChhh---------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLPAT---------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP~~---------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                                 ...||+|++|+|..         ..++++.+.. |+++        |++.+.+.++.
T Consensus       161 -----------~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~Lkpg--------G~lv~~~~~~~  209 (296)
T 1inl_A          161 -----------KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKED--------GVFSAETEDPF  209 (296)
T ss_dssp             -----------SSCEEEEEEEC----------CCSHHHHHHHHHHEEEE--------EEEEEECCCTT
T ss_pred             -----------CCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCC--------cEEEEEccCcc
Confidence                       13599999998753         1467777666 7765        88887765543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.17  E-value=5.4e-10  Score=104.54  Aligned_cols=107  Identities=12%  Similarity=0.065  Sum_probs=83.3

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHH--hCCCC-CCCeEEEeccHHHHHHHHHHHhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRL--NERQV-KTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~--n~~~l-~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      ..++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.|++|+..  ++  + ..+++++++|+.+++...     
T Consensus       114 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~--~~~~~v~~~~~D~~~~l~~~-----  186 (321)
T 2pt6_A          114 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCG--YEDKRVNVFIEDASKFLENV-----  186 (321)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGG--GGSTTEEEEESCHHHHHHHC-----
T ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccc--cCCCcEEEEEccHHHHHhhc-----
Confidence            346789999999999999999986  46999999999999999999875  34  4 247999999999876531     


Q ss_pred             hhhcccCCCCCCCCcccEEEECChhh--------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNLPAT--------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~npP~~--------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                                  ...||+|++|++..        ..++++.+.. |+++        |++.+...++.
T Consensus       187 ------------~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg--------G~lv~~~~~~~  234 (321)
T 2pt6_A          187 ------------TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPN--------GYCVAQCESLW  234 (321)
T ss_dssp             ------------CSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEE--------EEEEEEECCTT
T ss_pred             ------------CCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCC--------cEEEEEcCCcc
Confidence                        13599999998421        1567777766 7775        88877655543

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.17  E-value=8.3e-11  Score=106.35  Aligned_cols=97  Identities=18%  Similarity=0.080  Sum_probs=71.6

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH----------hCC----CCCCCeEEEeccHHHHH
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRL----------NER----QVKTPISATQKDARDFL  226 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~----------n~~----~l~~~v~~~~~D~~~~~  226 (324)
                      .++.+|||+|||+|..+..+|+.|++|+|+|+|+.|++.|+++...          ++.    ....+++++++|+.++.
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~  146 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP  146 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence            4788999999999999999999999999999999999999876532          100    00137999999998754


Q ss_pred             HHHHHHhhhhhcccCCCCCCCCcccEEEEC------ChhhhHHHHHHHhc-cchh
Q psy16898        227 QTDARAHLVRWSQSEGNSTGGTAVARVIMN------LPATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~n------pP~~a~~~l~~~~~-l~~~  274 (324)
                      ...                 ...||.|++.      +|.....++..+.. |+++
T Consensus       147 ~~~-----------------~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpG  184 (252)
T 2gb4_A          147 RAN-----------------IGKFDRIWDRGALVAINPGDHDRYADIILSLLRKE  184 (252)
T ss_dssp             GGC-----------------CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE
T ss_pred             ccc-----------------CCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCC
Confidence            320                 1359999964      23333457777766 7775

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.17  E-value=1.5e-10  Score=103.40  Aligned_cols=103  Identities=9%  Similarity=0.022  Sum_probs=80.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++..++  +.++++++++|+.++...          
T Consensus        44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~----------  111 (257)
T 3f4k_A           44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKAN--CADRVKGITGSMDNLPFQ----------  111 (257)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTSCSSC----------
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChhhCCCC----------
Confidence            45788999999999999999999754 99999999999999999999999  887799999998654211          


Q ss_pred             ccCCCCCCCCcccEEEECChh---hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        239 QSEGNSTGGTAVARVIMNLPA---TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~---~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                              ...||+|+++..-   ....++..+.. |+++        |.+.+.+.
T Consensus       112 --------~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pg--------G~l~~~~~  151 (257)
T 3f4k_A          112 --------NEELDLIWSEGAIYNIGFERGMNEWSKYLKKG--------GFIAVSEA  151 (257)
T ss_dssp             --------TTCEEEEEEESCSCCCCHHHHHHHHHTTEEEE--------EEEEEEEE
T ss_pred             --------CCCEEEEEecChHhhcCHHHHHHHHHHHcCCC--------cEEEEEEe
Confidence                    2459999986322   12346666665 7765        77776653

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.17  E-value=9.3e-11  Score=102.94  Aligned_cols=109  Identities=18%  Similarity=0.227  Sum_probs=84.0

Q ss_pred             HhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCC----CCeEEEeccHHHHHHHHHHH
Q psy16898        157 TKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVK----TPISATQKDARDFLQTDARA  232 (324)
Q Consensus       157 ~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~----~~v~~~~~D~~~~~~~~~~~  232 (324)
                      ...+.++.+|||+|||+|.++..+++.+++|+|+|+|+.+++.+++++..++  +.    +++.++++|+.++...    
T Consensus        25 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~----   98 (235)
T 3sm3_A           25 HNYLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPG--LNQKTGGKAEFKVENASSLSFH----   98 (235)
T ss_dssp             HHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCS--CCSSSSCEEEEEECCTTSCCSC----
T ss_pred             HHhCCCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcC--CccccCcceEEEEecccccCCC----
Confidence            3456789999999999999999999999999999999999999999998776  52    3689999998754211    


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECCh-------hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNLP-------ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~npP-------~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                                    ...||.|+++..       .....++..+.. |+++        |.+.+..+...
T Consensus        99 --------------~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pg--------G~l~~~~~~~~  145 (235)
T 3sm3_A           99 --------------DSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPG--------AYLYLVEFGQN  145 (235)
T ss_dssp             --------------TTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEE--------EEEEEEEEBCC
T ss_pred             --------------CCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCC--------eEEEEEECCcc
Confidence                          245999998632       222356777666 7765        88877766553

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.16  E-value=8.2e-11  Score=105.21  Aligned_cols=104  Identities=12%  Similarity=0.155  Sum_probs=76.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHH------hCCCCCCCeEEEeccHHHHHHHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRL------NERQVKTPISATQKDARDFLQTDAR  231 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~------n~~~l~~~v~~~~~D~~~~~~~~~~  231 (324)
                      ..++.+|||+|||+|.+++.+|+.  +..|+|+|+++.+++.|++|++.      ++  +. ++.++++|+.+.+.....
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~--~~-nv~~~~~d~~~~l~~~~~  120 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGG--FQ-NIACLRSNAMKHLPNFFY  120 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCC--CT-TEEEEECCTTTCHHHHCC
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcC--CC-eEEEEECcHHHhhhhhCC
Confidence            346679999999999999999985  56999999999999999999864      34  54 899999999874432111


Q ss_pred             HhhhhhcccCCCCCCCCcccEEEECChhhh------------HHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        232 AHLVRWSQSEGNSTGGTAVARVIMNLPATA------------VEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a------------~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                                     ...||.|+++.|.--            ..++..+.. |+++        |.+++-+
T Consensus       121 ---------------~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpG--------G~l~~~t  168 (235)
T 3ckk_A          121 ---------------KGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVG--------GLVYTIT  168 (235)
T ss_dssp             ---------------TTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEE--------EEEEEEE
T ss_pred             ---------------CcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCC--------CEEEEEe
Confidence                           135999998765421            257777766 7775        6666554

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.16  E-value=1.4e-10  Score=105.71  Aligned_cols=103  Identities=17%  Similarity=0.110  Sum_probs=81.6

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.++.+|||+|||+|.++..+++ .|++|+|+|+|+.+++.+++++...+  +.++++++.+|+.++.            
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~------------  127 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSE--NLRSKRVLLAGWEQFD------------  127 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCC--CCSCEEEEESCGGGCC------------
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CCCCeEEEECChhhCC------------
Confidence            45788999999999999999994 67899999999999999999999887  7668999999986532            


Q ss_pred             ccCCCCCCCCcccEEEEC------ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        239 QSEGNSTGGTAVARVIMN------LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~n------pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                               ..||.|++.      ++.....++..+.. |+++        |.+.+..+...
T Consensus       128 ---------~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~~~  172 (287)
T 1kpg_A          128 ---------EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD--------GVMLLHTITGL  172 (287)
T ss_dssp             ---------CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT--------CEEEEEEEEEC
T ss_pred             ---------CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCC--------CEEEEEEecCC
Confidence                     249999986      22234556666655 6654        88877766553

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.16  E-value=8e-11  Score=104.32  Aligned_cols=101  Identities=17%  Similarity=0.073  Sum_probs=76.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-G-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.++.+|||+|||+|.+++.+++. | .+|+|+|+|+.+++.|++|++.+.     ++.++.+|+.+.......      
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~v~~~~~d~~~~~~~~~~------  140 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE-----NIIPILGDANKPQEYANI------  140 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT-----TEEEEECCTTCGGGGTTT------
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCC-----CeEEEECCCCCccccccc------
Confidence            457889999999999999999986 4 699999999999999999986543     799999998762110000      


Q ss_pred             cccCCCCCCCCcccEEEECChhh--hHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPAT--AVEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~--a~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                               ...||.|+.++|..  ...++..+.. |+++        |.+.+.
T Consensus       141 ---------~~~~D~v~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~i~  177 (230)
T 1fbn_A          141 ---------VEKVDVIYEDVAQPNQAEILIKNAKWFLKKG--------GYGMIA  177 (230)
T ss_dssp             ---------SCCEEEEEECCCSTTHHHHHHHHHHHHEEEE--------EEEEEE
T ss_pred             ---------CccEEEEEEecCChhHHHHHHHHHHHhCCCC--------cEEEEE
Confidence                     13599999998763  2456666665 7776        777664

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.16  E-value=1.7e-10  Score=105.88  Aligned_cols=104  Identities=14%  Similarity=0.101  Sum_probs=81.6

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHh--CCCC--------CCCeEEEeccHHHHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLN--ERQV--------KTPISATQKDARDFLQT  228 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n--~~~l--------~~~v~~~~~D~~~~~~~  228 (324)
                      ..++.+|||+|||+|.++..+++.+. +|+++|+++.+++.|++|+ ..  +  +        ..+++++.+|+.+++..
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~--l~~~~~~~~~~~v~~~~~D~~~~l~~  149 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNG--LLEAMLNGKHEKAKLTIGDGFEFIKN  149 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTT--HHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccc--cccccccCCCCcEEEEECchHHHhcc
Confidence            35678999999999999999998754 9999999999999999998 32  2  3        24799999999987654


Q ss_pred             HHHHhhhhhcccCCCCCCCCcccEEEECChhh--------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        229 DARAHLVRWSQSEGNSTGGTAVARVIMNLPAT--------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~--------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                        .                ..||+|++|+|..        ..+|++.+.. |+++        |++.+.+-+.
T Consensus       150 --~----------------~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg--------G~lv~~~~~~  196 (281)
T 1mjf_A          150 --N----------------RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP--------GIYVTQAGSV  196 (281)
T ss_dssp             --C----------------CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE--------EEEEEEEEET
T ss_pred             --c----------------CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC--------cEEEEEcCCc
Confidence              1                3499999999841        2567777766 7765        7777765444

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.16  E-value=3.3e-11  Score=110.86  Aligned_cols=84  Identities=21%  Similarity=0.287  Sum_probs=71.0

Q ss_pred             HHHhh--ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898        155 RVTKE--VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA  232 (324)
Q Consensus       155 ~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~  232 (324)
                      ++++.  +.++.+|||+|||+|.++..+++.+++|+|+|+++.+++.+++++..++  +.++++++++|+.++..     
T Consensus        19 ~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~D~~~~~~-----   91 (285)
T 1zq9_A           19 SIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTP--VASKLQVLVGDVLKTDL-----   91 (285)
T ss_dssp             HHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTST--TGGGEEEEESCTTTSCC-----
T ss_pred             HHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcceecccc-----
Confidence            34443  4578899999999999999999998999999999999999999998776  64589999999876411     


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                     ..||.|++|+|+.
T Consensus        92 ---------------~~fD~vv~nlpy~  104 (285)
T 1zq9_A           92 ---------------PFFDTCVANLPYQ  104 (285)
T ss_dssp             ---------------CCCSEEEEECCGG
T ss_pred             ---------------hhhcEEEEecCcc
Confidence                           2499999999985

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.16  E-value=1.7e-10  Score=102.61  Aligned_cols=107  Identities=16%  Similarity=0.103  Sum_probs=83.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +.++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.+++++..++  ++ +++++.+|+.++...           
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~-~v~~~~~d~~~~~~~-----------   84 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKG--VE-NVRFQQGTAESLPFP-----------   84 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHT--CC-SEEEEECBTTBCCSC-----------
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcC--CC-CeEEEecccccCCCC-----------
Confidence            5688999999999999999999988899999999999999999999988  76 799999998753211           


Q ss_pred             cCCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCC
Q psy16898        240 SEGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMD  295 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~  295 (324)
                             ...||.|+++..-    ....++..+.. |+++        |.+.+..+.....
T Consensus        85 -------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~~~~~  130 (239)
T 1xxl_A           85 -------DDSFDIITCRYAAHHFSDVRKAVREVARVLKQD--------GRFLLVDHYAPED  130 (239)
T ss_dssp             -------TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE--------EEEEEEEECBCSS
T ss_pred             -------CCcEEEEEECCchhhccCHHHHHHHHHHHcCCC--------cEEEEEEcCCCCC
Confidence                   2459999987322    12456666655 7765        7777765554433

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.16  E-value=7.9e-11  Score=108.31  Aligned_cols=115  Identities=17%  Similarity=0.180  Sum_probs=85.7

Q ss_pred             hHHHHHHHhhcc-CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCC--CCeEEEeccHHHHH
Q psy16898        150 STEHERVTKEVR-EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVK--TPISATQKDARDFL  226 (324)
Q Consensus       150 ~~e~~~~~~~~~-~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~--~~v~~~~~D~~~~~  226 (324)
                      ..+...+++.+. ++.+|||+|||+|.++..+++.|.+|+|+|+|+.+++.|++++..++  +.  .+++++++|+.++.
T Consensus        69 ~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~v~~~~~d~~~~~  146 (299)
T 3g2m_A           69 TSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAP--ADVRDRCTLVQGDMSAFA  146 (299)
T ss_dssp             HHHHHHHHHHHCCCCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSC--HHHHTTEEEEECBTTBCC
T ss_pred             cHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcc--cccccceEEEeCchhcCC
Confidence            344445555543 45699999999999999999999999999999999999999998765  42  47999999988642


Q ss_pred             HHHHHHhhhhhcccCCCCCCCCcccEEEEC-------ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        227 QTDARAHLVRWSQSEGNSTGGTAVARVIMN-------LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~n-------pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                      .                   ...||.|++.       +|.....++..+.. |+++        |.+.+..+...
T Consensus       147 ~-------------------~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pg--------G~l~~~~~~~~  194 (299)
T 3g2m_A          147 L-------------------DKRFGTVVISSGSINELDEADRRGLYASVREHLEPG--------GKFLLSLAMSE  194 (299)
T ss_dssp             C-------------------SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEE--------EEEEEEEECCH
T ss_pred             c-------------------CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCC--------cEEEEEeecCc
Confidence            2                   1359999864       22223556776666 7775        77777666553

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.15  E-value=2.5e-10  Score=98.70  Aligned_cols=77  Identities=14%  Similarity=0.129  Sum_probs=62.4

Q ss_pred             HhhccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898        157 TKEVREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       157 ~~~~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      .+.+.+.++|||+|||+|++|+.++..  +++|+|+|+|+.|++.+++|+..++  +.+++++  .|......       
T Consensus        44 ~~~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g--~~~~v~~--~d~~~~~~-------  112 (200)
T 3fzg_A           44 FGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLK--TTIKYRF--LNKESDVY-------  112 (200)
T ss_dssp             HHHSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSC--CSSEEEE--ECCHHHHT-------
T ss_pred             HhhcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC--CCccEEE--ecccccCC-------
Confidence            344677889999999999999999874  6799999999999999999999999  7756766  55544221       


Q ss_pred             hhhcccCCCCCCCCcccEEEEC
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMN  256 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~n  256 (324)
                                  +..||+|++.
T Consensus       113 ------------~~~~DvVLa~  122 (200)
T 3fzg_A          113 ------------KGTYDVVFLL  122 (200)
T ss_dssp             ------------TSEEEEEEEE
T ss_pred             ------------CCCcChhhHh
Confidence                        2459999775

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.14  E-value=2.1e-10  Score=104.49  Aligned_cols=102  Identities=22%  Similarity=0.184  Sum_probs=80.4

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      ++.+|||+|||+|.++..+++.|++|+|+|+|+.+++.|++++..++  +..+++++++|+.+.....            
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~------------  133 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKG--VSDNMQFIHCAAQDVASHL------------  133 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-C--CGGGEEEEESCGGGTGGGC------------
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCcceEEEEcCHHHhhhhc------------
Confidence            56799999999999999999999999999999999999999999888  8668999999998764211            


Q ss_pred             CCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        242 GNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                           ...||.|+++-.-    ....++..+.. |+++        |.+.+..+
T Consensus       134 -----~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~  174 (285)
T 4htf_A          134 -----ETPVDLILFHAVLEWVADPRSVLQTLWSVLRPG--------GVLSLMFY  174 (285)
T ss_dssp             -----SSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE--------EEEEEEEE
T ss_pred             -----CCCceEEEECchhhcccCHHHHHHHHHHHcCCC--------eEEEEEEe
Confidence                 2459999986322    12456777666 7765        77766554

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.14  E-value=1.1e-10  Score=109.95  Aligned_cols=94  Identities=22%  Similarity=0.188  Sum_probs=75.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.++.+|||+|||+|.+++.+++.|+ +|+|+|+|+ +++.|++|++.|+  +.++++++++|+.++...          
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~----------  128 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNK--LEDTITLIKGKIEEVHLP----------  128 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTT--CTTTEEEEESCTTTSCCS----------
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcC--CCCcEEEEEeeHHHhcCC----------
Confidence            45788999999999999999999886 999999997 9999999999999  866899999998864211          


Q ss_pred             ccCCCCCCCCcccEEEECC-hhh------hHHHHHHHhc-cchh
Q psy16898        239 QSEGNSTGGTAVARVIMNL-PAT------AVEYVRYLKV-LTRE  274 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~np-P~~------a~~~l~~~~~-l~~~  274 (324)
                              ...||+|++++ +..      ...++..+.. |+++
T Consensus       129 --------~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkpg  164 (340)
T 2fyt_A          129 --------VEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKG  164 (340)
T ss_dssp             --------CSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEE
T ss_pred             --------CCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCC
Confidence                    14599999987 321      2346666655 7775

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.13  E-value=4.8e-11  Score=108.35  Aligned_cols=83  Identities=17%  Similarity=0.121  Sum_probs=66.0

Q ss_pred             cCC--CEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCC--CC----CCCeEEEeccHHHHHHHHHHH
Q psy16898        161 REG--DLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNER--QV----KTPISATQKDARDFLQTDARA  232 (324)
Q Consensus       161 ~~g--~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~--~l----~~~v~~~~~D~~~~~~~~~~~  232 (324)
                      .+|  .+|||+|||+|..++.+|++|++|+++|+++.+++.+++|++..+.  .+    .++++++++|+.+++...   
T Consensus        85 ~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~---  161 (258)
T 2oyr_A           85 KGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI---  161 (258)
T ss_dssp             BTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC---
T ss_pred             cCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC---
Confidence            567  8999999999999999999999999999999988888877653210  01    136999999999876542   


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                    ...||+|++|||+.
T Consensus       162 --------------~~~fDvV~lDP~y~  175 (258)
T 2oyr_A          162 --------------TPRPQVVYLDPMFP  175 (258)
T ss_dssp             --------------SSCCSEEEECCCCC
T ss_pred             --------------cccCCEEEEcCCCC
Confidence                          12499999999874

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.13  E-value=4.2e-10  Score=101.02  Aligned_cols=105  Identities=24%  Similarity=0.148  Sum_probs=81.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      ..++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++..++  ++ ++.++.+|+.++...           
T Consensus        35 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~-~v~~~~~d~~~l~~~-----------  100 (260)
T 1vl5_A           35 LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNG--HQ-QVEYVQGDAEQMPFT-----------  100 (260)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTT--CC-SEEEEECCC-CCCSC-----------
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcC--CC-ceEEEEecHHhCCCC-----------
Confidence            4578899999999999999999988899999999999999999999888  76 799999998764211           


Q ss_pred             cCCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        240 SEGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                             ...||+|+++..-    ....++..+.. |+++        |.+.+..+...
T Consensus       101 -------~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg--------G~l~~~~~~~~  144 (260)
T 1vl5_A          101 -------DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG--------GQLLLVDNSAP  144 (260)
T ss_dssp             -------TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE--------EEEEEEEEEBC
T ss_pred             -------CCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCC--------CEEEEEEcCCC
Confidence                   1359999987321    12356666665 7775        77776554443

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.13  E-value=1.8e-10  Score=107.87  Aligned_cols=107  Identities=16%  Similarity=0.186  Sum_probs=80.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-C--CEEEEEeCCHHHHHHHHHHHHH-------hCCCCC---CCeEEEeccHHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-G--AIVAANDLNPDSYAWLQASIRL-------NERQVK---TPISATQKDARDFL  226 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g--~~V~avD~~~~a~~~a~~N~~~-------n~~~l~---~~v~~~~~D~~~~~  226 (324)
                      +.+|.+|||+|||+|.+++.+++. |  .+|+|+|+++.+++.|++|+..       |+  +.   ++++++.+|+.+..
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~--~~~~~~~v~~~~~d~~~~~  180 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSH--VEEWPDNVDFIHKDISGAT  180 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTC--SSCCCCCEEEEESCTTCCC
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhccccccc--ccccCCceEEEECChHHcc
Confidence            568999999999999999999986 4  6999999999999999999984       44  42   47999999998753


Q ss_pred             HHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        227 QTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                      ....                ...||.|++|+|.. ..+++.+.. |+++        |.+.++.....
T Consensus       181 ~~~~----------------~~~fD~V~~~~~~~-~~~l~~~~~~Lkpg--------G~lv~~~~~~~  223 (336)
T 2b25_A          181 EDIK----------------SLTFDAVALDMLNP-HVTLPVFYPHLKHG--------GVCAVYVVNIT  223 (336)
T ss_dssp             -----------------------EEEEEECSSST-TTTHHHHGGGEEEE--------EEEEEEESSHH
T ss_pred             cccC----------------CCCeeEEEECCCCH-HHHHHHHHHhcCCC--------cEEEEEeCCHH
Confidence            2211                12499999998863 335665555 7765        88887776443

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.12  E-value=1.2e-10  Score=109.97  Aligned_cols=94  Identities=16%  Similarity=0.175  Sum_probs=76.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.++.+|||+|||+|.+++.+++.|+ +|+|+|+| .+++.|+++++.|+  +.++++++++|+.++...          
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~----------  130 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANK--LDHVVTIIKGKVEEVELP----------  130 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTT--CTTTEEEEESCTTTCCCS----------
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcC--CCCcEEEEECcHHHccCC----------
Confidence            45889999999999999999999877 99999999 59999999999999  887799999999875211          


Q ss_pred             ccCCCCCCCCcccEEEECChh-------hhHHHHHHHhc-cchh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPA-------TAVEYVRYLKV-LTRE  274 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~-------~a~~~l~~~~~-l~~~  274 (324)
                              ...||+|+++++.       ....++..+.. |+++
T Consensus       131 --------~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~Lkpg  166 (349)
T 3q7e_A          131 --------VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPD  166 (349)
T ss_dssp             --------SSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEE
T ss_pred             --------CCceEEEEEccccccccCchhHHHHHHHHHHhCCCC
Confidence                    2459999998642       12356666655 7776

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.12  E-value=1.1e-10  Score=100.95  Aligned_cols=106  Identities=16%  Similarity=0.063  Sum_probs=80.4

Q ss_pred             HHhhccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898        156 VTKEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       156 ~~~~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      +...+.++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.+++++..    .. +++++++|+.++...      
T Consensus        36 l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~----~~-~i~~~~~d~~~~~~~------  104 (215)
T 2pxx_A           36 LEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH----VP-QLRWETMDVRKLDFP------  104 (215)
T ss_dssp             HGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT----CT-TCEEEECCTTSCCSC------
T ss_pred             HHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc----CC-CcEEEEcchhcCCCC------
Confidence            334567889999999999999999999887 999999999999999998763    22 689999998764110      


Q ss_pred             hhhcccCCCCCCCCcccEEEECChhh-------------------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNLPAT-------------------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~npP~~-------------------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                  ...||.|+++++-.                   ...++..+.. |+++        |.+.+..+..
T Consensus       105 ------------~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~li~~~~~~  162 (215)
T 2pxx_A          105 ------------SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPG--------GRFISMTSAA  162 (215)
T ss_dssp             ------------SSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEE--------EEEEEEESCC
T ss_pred             ------------CCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCC--------CEEEEEeCCC
Confidence                        23599999987652                   1345555544 6654        8888877765

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.12  E-value=1.7e-10  Score=106.97  Aligned_cols=94  Identities=14%  Similarity=0.139  Sum_probs=73.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.++.+|||+|||+|.+++.++++  +++|+|+|+|+.|++.|++|++.++    ++++++++|+.++.......     
T Consensus        24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g----~~v~~v~~d~~~l~~~l~~~-----   94 (301)
T 1m6y_A           24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS----DRVSLFKVSYREADFLLKTL-----   94 (301)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT----TTEEEEECCGGGHHHHHHHT-----
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEECCHHHHHHHHHhc-----
Confidence            457889999999999999999986  4799999999999999999998876    37999999988764322110     


Q ss_pred             cccCCCCCCCCcccEEEECChhhhHHHHHHHhc
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV  270 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~  270 (324)
                              ....||.|++|||.+...+-+.-++
T Consensus        95 --------g~~~~D~Vl~D~gvSs~qld~~~rg  119 (301)
T 1m6y_A           95 --------GIEKVDGILMDLGVSTYQLKGENRG  119 (301)
T ss_dssp             --------TCSCEEEEEEECSCCHHHHHTSCSC
T ss_pred             --------CCCCCCEEEEcCccchhhhcccccc
Confidence                    0134999999999876554433333

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.12  E-value=1.8e-11  Score=112.04  Aligned_cols=103  Identities=19%  Similarity=0.233  Sum_probs=76.0

Q ss_pred             CCeEEEEeccceeecCcChHHHHHHHhh--ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCC
Q psy16898        132 NGCTFKMDFSKVYWNSRLSTEHERVTKE--VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNER  209 (324)
Q Consensus       132 ~g~~f~id~~~~f~~~r~~~e~~~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~  209 (324)
                      .|++.+-.+++-|+......  .++++.  +.++ +|||+|||+|.++..+++++++|+|+|+++.+++.+++++.  + 
T Consensus        17 ~~~~~~k~~GQnfL~d~~i~--~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~--~-   90 (271)
T 3fut_A           17 HGLFADKRFGQNFLVSEAHL--RRIVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS--G-   90 (271)
T ss_dssp             TTCCCSTTSSCCEECCHHHH--HHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT--T-
T ss_pred             cCCCccccCCccccCCHHHH--HHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC--C-
Confidence            44444444555454333122  234443  5678 99999999999999999999999999999999999998875  2 


Q ss_pred             CCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        210 QVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       210 ~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                         ++++++++|+.++....                 ...+|.||.|||+.
T Consensus        91 ---~~v~vi~~D~l~~~~~~-----------------~~~~~~iv~NlPy~  121 (271)
T 3fut_A           91 ---LPVRLVFQDALLYPWEE-----------------VPQGSLLVANLPYH  121 (271)
T ss_dssp             ---SSEEEEESCGGGSCGGG-----------------SCTTEEEEEEECSS
T ss_pred             ---CCEEEEECChhhCChhh-----------------ccCccEEEecCccc
Confidence               26999999998763221                 01389999999995

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.12  E-value=4.2e-10  Score=100.02  Aligned_cols=111  Identities=14%  Similarity=0.004  Sum_probs=81.9

Q ss_pred             HHhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        156 VTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       156 ~~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      ++..+.++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++.     .. +++++++|+.+.......+.  
T Consensus        50 ~~~~~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~-----~~-~~~~~~~d~~~~~~~~~~~~--  121 (245)
T 3ggd_A           50 FELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT-----AA-NISYRLLDGLVPEQAAQIHS--  121 (245)
T ss_dssp             HTTTSCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC-----CT-TEEEEECCTTCHHHHHHHHH--
T ss_pred             HhhccCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc-----cc-CceEEECccccccccccccc--
Confidence            33446788899999999999999999988899999999999999998772     22 69999999988654322110  


Q ss_pred             hhcccCCCCCCCCcccEEEEC------ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        236 RWSQSEGNSTGGTAVARVIMN------LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~n------pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                                 ...||.|+++      ++.....++..+.. |+++        |.+.+..+...
T Consensus       122 -----------~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~~~~  167 (245)
T 3ggd_A          122 -----------EIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQ--------GAMYLIELGTG  167 (245)
T ss_dssp             -----------HHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTT--------CEEEEEEECTT
T ss_pred             -----------ccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCC--------CEEEEEeCCcc
Confidence                       0138999886      22234567777666 6664        88777776554

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.12  E-value=1.5e-10  Score=109.01  Aligned_cols=128  Identities=19%  Similarity=0.131  Sum_probs=91.5

Q ss_pred             CCeEEEEeccceeecCcChHHHHHHHhhc--cCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHh
Q psy16898        132 NGCTFKMDFSKVYWNSRLSTEHERVTKEV--REGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLN  207 (324)
Q Consensus       132 ~g~~f~id~~~~f~~~r~~~e~~~~~~~~--~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n  207 (324)
                      .+..+...+.- |...++......+++.+  .++.+|||+|||+|.+++.+++.+  .+|+++|+|+.+++.+++|+..|
T Consensus       165 ~~~~~~~~~gv-f~~~~~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~  243 (343)
T 2pjd_A          165 DGLTVKTLPGV-FSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN  243 (343)
T ss_dssp             TTEEEEECTTC-TTSSSCCHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT
T ss_pred             cceEEEecCCc-cCCCCCcHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh
Confidence            55555555443 33334443344555554  356799999999999999999865  59999999999999999999999


Q ss_pred             CCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh---------hHHHHHHHhc-cchhhcC
Q psy16898        208 ERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT---------AVEYVRYLKV-LTREEFG  277 (324)
Q Consensus       208 ~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~---------a~~~l~~~~~-l~~~~~~  277 (324)
                      +  +.  ++++.+|+.++.                    ...||.|++|||..         ...++..+.. |+++   
T Consensus       244 ~--~~--~~~~~~d~~~~~--------------------~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkpg---  296 (343)
T 2pjd_A          244 G--VE--GEVFASNVFSEV--------------------KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSG---  296 (343)
T ss_dssp             T--CC--CEEEECSTTTTC--------------------CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEE---
T ss_pred             C--CC--CEEEEccccccc--------------------cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCC---
Confidence            8  75  678899987532                    13599999999863         1345555555 6654   


Q ss_pred             CCCCCCEEEEEEccc
Q psy16898        278 KLSRPPVLYLYCFLP  292 (324)
Q Consensus       278 ~~~~~g~vh~y~f~~  292 (324)
                           |.+.+.....
T Consensus       297 -----G~l~i~~~~~  306 (343)
T 2pjd_A          297 -----GELRIVANAF  306 (343)
T ss_dssp             -----EEEEEEEETT
T ss_pred             -----cEEEEEEcCC
Confidence                 7777665443

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.12  E-value=1.3e-10  Score=111.06  Aligned_cols=93  Identities=22%  Similarity=0.173  Sum_probs=76.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.++.+|||+|||+|.+++.+++.|+ +|+|+|+| .+++.|+++++.|+  +.++++++++|+.++...          
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~----------  127 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANN--LDHIVEVIEGSVEDISLP----------  127 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTT--CTTTEEEEESCGGGCCCS----------
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcC--CCCeEEEEECchhhcCcC----------
Confidence            35789999999999999999999988 99999999 99999999999999  887899999999875321          


Q ss_pred             ccCCCCCCCCcccEEEECC-hhh------hHHHHHHHhc-cchh
Q psy16898        239 QSEGNSTGGTAVARVIMNL-PAT------AVEYVRYLKV-LTRE  274 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~np-P~~------a~~~l~~~~~-l~~~  274 (324)
                               ..||+|++++ +..      ...++..+.. |+++
T Consensus       128 ---------~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~Lkpg  162 (376)
T 3r0q_C          128 ---------EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPT  162 (376)
T ss_dssp             ---------SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEE
T ss_pred             ---------CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCC
Confidence                     3599999987 222      2346666655 7776

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.11  E-value=3.3e-10  Score=98.76  Aligned_cols=105  Identities=16%  Similarity=0.179  Sum_probs=82.6

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.++.+|||+|||+|.++..+++.+   .+|+|+|+|+.+++.+++++..++  ++ +++++++|+.++...        
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~-~~~~~~~d~~~~~~~--------  103 (219)
T 3dh0_A           35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG--LK-NVEVLKSEENKIPLP--------  103 (219)
T ss_dssp             CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT--CT-TEEEEECBTTBCSSC--------
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC--CC-cEEEEecccccCCCC--------
Confidence            4678899999999999999999875   699999999999999999999998  87 799999998764211        


Q ss_pred             hcccCCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                                ...||.|+++..-    ....++..+.. |+++        |.+.+..+...
T Consensus       104 ----------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~~~~  147 (219)
T 3dh0_A          104 ----------DNTVDFIFMAFTFHELSEPLKFLEELKRVAKPF--------AYLAIIDWKKE  147 (219)
T ss_dssp             ----------SSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEE--------EEEEEEEECSS
T ss_pred             ----------CCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCC--------eEEEEEEeccc
Confidence                      2459999986332    13456666665 7765        77777666543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.10  E-value=4e-10  Score=97.41  Aligned_cols=106  Identities=14%  Similarity=0.051  Sum_probs=77.4

Q ss_pred             HhhccCCCEEEEEcCCCchhHH-HHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        157 TKEVREGDLVLDVFAGVGPFSI-PAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       157 ~~~~~~g~~VLDl~~G~G~~al-~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      +....++.+|||+|||+|.+++ .+++.|++|+|+|+|+.+++.+++++..++  .  +++++++|+.++...       
T Consensus        18 ~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~--~~~~~~~d~~~~~~~-------   86 (209)
T 2p8j_A           18 CNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN--F--KLNISKGDIRKLPFK-------   86 (209)
T ss_dssp             HHHSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT--C--CCCEEECCTTSCCSC-------
T ss_pred             HhccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--C--ceEEEECchhhCCCC-------
Confidence            3456678999999999999854 445678899999999999999999998877  3  588999998763211       


Q ss_pred             hhcccCCCCCCCCcccEEEECCh------hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLP------ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP------~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                 ...||.|+++-.      .....++..+.. |+++        |.+.+..+..
T Consensus        87 -----------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~~  131 (209)
T 2p8j_A           87 -----------DESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPG--------GLACINFLTT  131 (209)
T ss_dssp             -----------TTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEEET
T ss_pred             -----------CCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCC--------cEEEEEEecc
Confidence                       135999998622      223456666655 7765        6666555543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.10  E-value=1.3e-10  Score=114.40  Aligned_cols=77  Identities=21%  Similarity=0.198  Sum_probs=67.1

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .++.+|||+|||+|.+++.+++.++ +|+|+|+|+ +++.|++|++.|+  +.++++++++|+.++..            
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~g--l~~~v~~~~~d~~~~~~------------  221 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNN--LTDRIVVIPGKVEEVSL------------  221 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTT--CTTTEEEEESCTTTCCC------------
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcC--CCCcEEEEECchhhCcc------------
Confidence            4688999999999999999999765 999999999 9999999999999  87789999999876311            


Q ss_pred             cCCCCCCCCcccEEEECChh
Q psy16898        240 SEGNSTGGTAVARVIMNLPA  259 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~  259 (324)
                             ...||+|++++|.
T Consensus       222 -------~~~fD~Ivs~~~~  234 (480)
T 3b3j_A          222 -------PEQVDIIISEPMG  234 (480)
T ss_dssp             -------SSCEEEEECCCCH
T ss_pred             -------CCCeEEEEEeCch
Confidence                   1359999999883

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.10  E-value=1.4e-10  Score=107.17  Aligned_cols=106  Identities=16%  Similarity=0.116  Sum_probs=83.2

Q ss_pred             hhccCCCEEEEEcCCCchhHHHHH--h-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898        158 KEVREGDLVLDVFAGVGPFSIPAA--R-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       158 ~~~~~g~~VLDl~~G~G~~al~~a--~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      ..+.++.+|||+|||+|.+++.+|  . .+++|+|+|+|+.+++.|++|+..++  +.++++++++|+.++...      
T Consensus       114 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~------  185 (305)
T 3ocj_A          114 RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA--LAGQITLHRQDAWKLDTR------  185 (305)
T ss_dssp             HHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST--TGGGEEEEECCGGGCCCC------
T ss_pred             hhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECchhcCCcc------
Confidence            346789999999999999999985  2 36699999999999999999999888  876799999999874211      


Q ss_pred             hhhcccCCCCCCCCcccEEEECChhh-------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNLPAT-------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~npP~~-------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                   ..||.|+++.+..       ...++..+.. |+++        |.+.+.++..
T Consensus       186 -------------~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~~~  230 (305)
T 3ocj_A          186 -------------EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPG--------GALVTSFLTP  230 (305)
T ss_dssp             -------------SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEE--------EEEEEECCCC
T ss_pred             -------------CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCC--------eEEEEEecCC
Confidence                         3599999976331       2246777766 7775        7877766554

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.10  E-value=2.4e-10  Score=100.57  Aligned_cols=106  Identities=14%  Similarity=0.117  Sum_probs=79.0

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhcC-------CEEEEEeCCHHHHHHHHHHHHHhCCCC----CCCeEEEeccHHHHHH
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARRG-------AIVAANDLNPDSYAWLQASIRLNERQV----KTPISATQKDARDFLQ  227 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~g-------~~V~avD~~~~a~~~a~~N~~~n~~~l----~~~v~~~~~D~~~~~~  227 (324)
                      .+.++.+|||+|||+|.++..+++.+       .+|+++|+++.+++.|++|+..++  +    ..+++++++|+.+...
T Consensus        77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~v~~~~~d~~~~~~  154 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDK--PELLKIDNFKIIHKNIYQVNE  154 (227)
T ss_dssp             TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHC--GGGGSSTTEEEEECCGGGCCH
T ss_pred             hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcC--ccccccCCEEEEECChHhccc
Confidence            35688999999999999999999864       399999999999999999999886  5    3479999999987431


Q ss_pred             HHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        228 TDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                      .....              ...||.|+++.+..  .+++.+.. |+++        |.+.+.+-
T Consensus       155 ~~~~~--------------~~~fD~I~~~~~~~--~~~~~~~~~Lkpg--------G~lv~~~~  194 (227)
T 2pbf_A          155 EEKKE--------------LGLFDAIHVGASAS--ELPEILVDLLAEN--------GKLIIPIE  194 (227)
T ss_dssp             HHHHH--------------HCCEEEEEECSBBS--SCCHHHHHHEEEE--------EEEEEEEE
T ss_pred             ccCcc--------------CCCcCEEEECCchH--HHHHHHHHhcCCC--------cEEEEEEc
Confidence            11010              13499999997753  23444444 6665        66665543

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.09  E-value=3.6e-10  Score=100.84  Aligned_cols=91  Identities=21%  Similarity=0.168  Sum_probs=72.7

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .++.+|||+|||+|.+++.+++.|.+|+|+|+|+.+++.|++|+..++  +  +++++++|+.++..             
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~--~v~~~~~d~~~~~~-------------  102 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERN--L--KIEFLQGDVLEIAF-------------  102 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--C--CCEEEESCGGGCCC-------------
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcC--C--ceEEEECChhhccc-------------
Confidence            367899999999999999999999999999999999999999999887  5  59999999886421             


Q ss_pred             CCCCCCCCcccEEEECC---hh----hhHHHHHHHhc-cchh
Q psy16898        241 EGNSTGGTAVARVIMNL---PA----TAVEYVRYLKV-LTRE  274 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~np---P~----~a~~~l~~~~~-l~~~  274 (324)
                            ...||.|++..   +.    ....++..+.. |+++
T Consensus       103 ------~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pg  138 (252)
T 1wzn_A          103 ------KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPG  138 (252)
T ss_dssp             ------CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             ------CCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCC
Confidence                  13499999742   22    23456666655 7765

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.09  E-value=1.4e-10  Score=101.12  Aligned_cols=98  Identities=12%  Similarity=0.036  Sum_probs=76.4

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++..++     +++++++|+.++..             
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~d~~~~~~-------------  111 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWS-----HISWAATDILQFST-------------  111 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCS-----SEEEEECCTTTCCC-------------
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCC-----CeEEEEcchhhCCC-------------
Confidence            466799999999999999999998899999999999999999886543     79999999876531             


Q ss_pred             CCCCCCCCcccEEEECC-------hhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        241 EGNSTGGTAVARVIMNL-------PATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~np-------P~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                            ...||.|+++.       |.....++..+.. |+++        |.+.+.+.
T Consensus       112 ------~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pg--------G~l~~~~~  155 (216)
T 3ofk_A          112 ------AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPG--------GHLVFGSA  155 (216)
T ss_dssp             ------SCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEE--------EEEEEEEE
T ss_pred             ------CCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCC--------CEEEEEec
Confidence                  24599999972       2222356666655 7765        77776543

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.09  E-value=6.5e-10  Score=103.58  Aligned_cols=108  Identities=19%  Similarity=0.163  Sum_probs=82.6

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHH-hCCCC-CCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRL-NERQV-KTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~-n~~~l-~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      ..++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.|++++.. |+..+ ..+++++.+|+.+++...      
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------  148 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT------  148 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC------
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc------
Confidence            346789999999999999999986  45999999999999999999864 22001 247999999999876541      


Q ss_pred             hhcccCCCCCCCCcccEEEECChhh-----------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLPAT-----------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP~~-----------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                 ...||+|++|++..           ..+|++.+.. |+++        |++.+.+.+.
T Consensus       149 -----------~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkpg--------G~lv~~~~~~  198 (314)
T 1uir_A          149 -----------EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG--------GVMGMQTGMI  198 (314)
T ss_dssp             -----------CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE--------EEEEEEEEEE
T ss_pred             -----------CCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCC--------cEEEEEccCc
Confidence                       24599999998652           2567777766 7765        7777765444

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.09  E-value=5.7e-10  Score=98.57  Aligned_cols=96  Identities=18%  Similarity=0.141  Sum_probs=75.6

Q ss_pred             HHHhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898        155 RVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       155 ~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      .+.+.+.++.+|||+|||+|.++..+++. .+|+|+|+|+.+++.|++++..++  .  +++++++|+.++..       
T Consensus        26 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~--~~~~~~~d~~~~~~-------   93 (243)
T 3d2l_A           26 WVLEQVEPGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETN--R--HVDFWVQDMRELEL-------   93 (243)
T ss_dssp             HHHHHSCTTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTT--C--CCEEEECCGGGCCC-------
T ss_pred             HHHHHcCCCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcC--C--ceEEEEcChhhcCC-------
Confidence            45566778899999999999999999988 899999999999999999998776  3  58999999876421       


Q ss_pred             hhhcccCCCCCCCCcccEEEECC--------hhhhHHHHHHHhc-cchh
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNL--------PATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~np--------P~~a~~~l~~~~~-l~~~  274 (324)
                                  ...||.|+++.        +.....++..+.. |+++
T Consensus        94 ------------~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg  130 (243)
T 3d2l_A           94 ------------PEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDG  130 (243)
T ss_dssp             ------------SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEE
T ss_pred             ------------CCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCC
Confidence                        13599999864        1223456666655 7765

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.09  E-value=5.3e-10  Score=102.37  Aligned_cols=98  Identities=24%  Similarity=0.222  Sum_probs=67.0

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeC-CHHHHHHHHHHHH-----HhCCCCC----CCeEEEeccHHHHHHHH
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDL-NPDSYAWLQASIR-----LNERQVK----TPISATQKDARDFLQTD  229 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~-~~~a~~~a~~N~~-----~n~~~l~----~~v~~~~~D~~~~~~~~  229 (324)
                      .++.+|||+|||+|.+++.+++.|+ +|+|+|+ |+.+++.|++|+.     .++  +.    +++++...|..+.....
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~  155 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCS--SETVKRASPKVVPYRWGDSPDSL  155 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC------------CCCEEEECCTTSCTHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcc--cccCCCCCeEEEEecCCCccHHH
Confidence            4788999999999999999999887 9999999 8999999999994     444  43    36888865543321111


Q ss_pred             HHHhhhhhcccCCCCCCCCcccEEEE-CChhh---hHHHHHHHhc-cc
Q psy16898        230 ARAHLVRWSQSEGNSTGGTAVARVIM-NLPAT---AVEYVRYLKV-LT  272 (324)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~fD~Vi~-npP~~---a~~~l~~~~~-l~  272 (324)
                      ... +.           ...||.|++ |++..   ...+++.+.. |+
T Consensus       156 ~~~-~~-----------~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk  191 (281)
T 3bzb_A          156 QRC-TG-----------LQRFQVVLLADLLSFHQAHDALLRSVKMLLA  191 (281)
T ss_dssp             HHH-HS-----------CSSBSEEEEESCCSCGGGHHHHHHHHHHHBC
T ss_pred             Hhh-cc-----------CCCCCEEEEeCcccChHHHHHHHHHHHHHhc
Confidence            100 00           135999987 76543   3456666655 55

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.08  E-value=6e-10  Score=102.00  Aligned_cols=104  Identities=12%  Similarity=0.050  Sum_probs=82.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.++.+|||+|||+|.++..+++. +++|+|+|+|+.+++.|++++...+  +.++++++++|+.++...          
T Consensus        80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~----------  147 (297)
T 2o57_A           80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFLEIPCE----------  147 (297)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHT--CTTTEEEEECCTTSCSSC----------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEEcCcccCCCC----------
Confidence            367889999999999999999986 8899999999999999999999988  877899999998764211          


Q ss_pred             ccCCCCCCCCcccEEEECC-----hhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        239 QSEGNSTGGTAVARVIMNL-----PATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~np-----P~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                              ...||.|++.-     |. ...++..+.. |+++        |.+.+..+..
T Consensus       148 --------~~~fD~v~~~~~l~~~~~-~~~~l~~~~~~Lkpg--------G~l~~~~~~~  190 (297)
T 2o57_A          148 --------DNSYDFIWSQDAFLHSPD-KLKVFQECARVLKPR--------GVMAITDPMK  190 (297)
T ss_dssp             --------TTCEEEEEEESCGGGCSC-HHHHHHHHHHHEEEE--------EEEEEEEEEE
T ss_pred             --------CCCEeEEEecchhhhcCC-HHHHHHHHHHHcCCC--------eEEEEEEecc
Confidence                    13599999852     22 3456777666 7775        7777665543

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.08  E-value=2.9e-10  Score=100.32  Aligned_cols=104  Identities=15%  Similarity=0.091  Sum_probs=80.3

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .++.+|||+|||+|.++..+++.  +.+|+|+|+|+.+++.|++++..++     +++++++|+.++...          
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~d~~~~~~~----------  107 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-----KVKYIEADYSKYDFE----------  107 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT-----TEEEEESCTTTCCCC----------
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC-----CEEEEeCchhccCCC----------
Confidence            47789999999999999999996  7799999999999999999876443     799999998764321          


Q ss_pred             ccCCCCCCCCcccEEEECChh-----h-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCCh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPA-----T-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDL  296 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~-----~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~  296 (324)
                               ..||.|+++..-     . ...++..+.. |+++        |.+.+..+......
T Consensus       108 ---------~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~~~~~~  155 (234)
T 3dtn_A          108 ---------EKYDMVVSALSIHHLEDEDKKELYKRSYSILKES--------GIFINADLVHGETA  155 (234)
T ss_dssp             ---------SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEECBCSSH
T ss_pred             ---------CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCC--------cEEEEEEecCCCCh
Confidence                     359999997422     1 2246666666 7775        88888777665443

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.08  E-value=4.2e-10  Score=103.38  Aligned_cols=110  Identities=15%  Similarity=0.146  Sum_probs=79.9

Q ss_pred             cCCCEEEEEcCCCchhHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHh-CCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAAR---RGAIVAANDLNPDSYAWLQASIRLN-ERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~---~g~~V~avD~~~~a~~~a~~N~~~n-~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      .++.+|||+|||+|.++..+++   .+++|+|+|+|+.+++.|+++++.+ +  ...+++++++|+.++......     
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~-----  107 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPD--TYKNVSFKISSSDDFKFLGAD-----  107 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC---CCTTEEEEECCTTCCGGGCTT-----
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccC--CCCceEEEEcCHHhCCccccc-----
Confidence            4788999999999999999994   5679999999999999999999987 3  345899999999864321100     


Q ss_pred             hcccCCCCCCCCcccEEEECChh---hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPA---TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~---~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                             ......||+|+++..-   ....++..+.. |+++        |.+.+.++..
T Consensus       108 -------~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~~~  152 (299)
T 3g5t_A          108 -------SVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKD--------GTIAIWGYAD  152 (299)
T ss_dssp             -------TTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEE--------EEEEEEEEEE
T ss_pred             -------cccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCC--------cEEEEEecCC
Confidence                   0001459999997432   12346666655 7765        7777655543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.08  E-value=2.3e-10  Score=107.14  Aligned_cols=94  Identities=21%  Similarity=0.185  Sum_probs=76.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.++.+|||+|||+|.+++.+++.|+ +|+|+|+| .+++.|+++++.|+  +.++++++++|+.++...          
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~----------  102 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNG--FSDKITLLRGKLEDVHLP----------  102 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTT--CTTTEEEEESCTTTSCCS----------
T ss_pred             hcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcC--CCCCEEEEECchhhccCC----------
Confidence            45789999999999999999999887 99999999 69999999999999  877899999998764211          


Q ss_pred             ccCCCCCCCCcccEEEECChhh-------hHHHHHHHhc-cchh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPAT-------AVEYVRYLKV-LTRE  274 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~-------a~~~l~~~~~-l~~~  274 (324)
                              ...||+|+++++..       ...++.++.. |+++
T Consensus       103 --------~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkpg  138 (328)
T 1g6q_1          103 --------FPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEG  138 (328)
T ss_dssp             --------SSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEE
T ss_pred             --------CCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCC
Confidence                    13599999997632       2346666655 7765

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.08  E-value=4.1e-10  Score=101.63  Aligned_cols=105  Identities=20%  Similarity=0.171  Sum_probs=82.0

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.++.+|||+|||+|.++..+++ .+++|+|+|+|+.+++.+++++..++  +.++++++.+|+.+....          
T Consensus        59 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~----------  126 (273)
T 3bus_A           59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAG--LANRVTFSYADAMDLPFE----------  126 (273)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTSCCSC----------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEECccccCCCC----------
Confidence            35788999999999999999998 47899999999999999999999988  877899999998763211          


Q ss_pred             ccCCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        239 QSEGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                              ...||.|++...-    ....++..+.. |+++        |.+.+..+..
T Consensus       127 --------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg--------G~l~i~~~~~  169 (273)
T 3bus_A          127 --------DASFDAVWALESLHHMPDRGRALREMARVLRPG--------GTVAIADFVL  169 (273)
T ss_dssp             --------TTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEE--------EEEEEEEEEE
T ss_pred             --------CCCccEEEEechhhhCCCHHHHHHHHHHHcCCC--------eEEEEEEeec
Confidence                    1359999975321    12456666666 7765        7777666554

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.08  E-value=2.6e-10  Score=107.67  Aligned_cols=92  Identities=21%  Similarity=0.163  Sum_probs=73.6

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .++.+|||+|||+|.+++.+++.|+ +|+|+|+|+ +++.|+++++.|+  +.++++++++|+.++..            
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~--l~~~v~~~~~d~~~~~~------------  113 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNN--LTDRIVVIPGKVEEVSL------------  113 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTT--CTTTEEEEESCTTTCCC------------
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcC--CCCcEEEEEcchhhCCC------------
Confidence            4788999999999999999999876 999999996 8899999999999  87789999999876411            


Q ss_pred             cCCCCCCCCcccEEEECChhh------hHHHHHHHhc-cchh
Q psy16898        240 SEGNSTGGTAVARVIMNLPAT------AVEYVRYLKV-LTRE  274 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~------a~~~l~~~~~-l~~~  274 (324)
                             ...||+|+++++..      ....+..+.. |+++
T Consensus       114 -------~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkpg  148 (348)
T 2y1w_A          114 -------PEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPS  148 (348)
T ss_dssp             -------SSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEE
T ss_pred             -------CCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCC
Confidence                   13599999997632      2344444444 6665

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.07  E-value=1.7e-10  Score=103.28  Aligned_cols=104  Identities=13%  Similarity=0.062  Sum_probs=78.6

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.++.+|||+|||+|.++..+++. +++|+|+|+|+.+++.+++++..+     .+++++++|+.+....          
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~~----------  117 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN-----NKIIFEANDILTKEFP----------  117 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC-----TTEEEEECCTTTCCCC----------
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC-----CCeEEEECccccCCCC----------
Confidence            457889999999999999999997 889999999999999998876532     3799999998764211          


Q ss_pred             ccCCCCCCCCcccEEEECC------hhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCC
Q psy16898        239 QSEGNSTGGTAVARVIMNL------PATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKM  294 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~np------P~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~  294 (324)
                              ...||.|+++.      +.....++..+.. |+++        |.+.+..+....
T Consensus       118 --------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg--------G~l~~~~~~~~~  164 (266)
T 3ujc_A          118 --------ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPT--------GTLLITDYCATE  164 (266)
T ss_dssp             --------TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEEEESC
T ss_pred             --------CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCC--------CEEEEEEeccCC
Confidence                    24599999972      2334456666666 7765        777766655443

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.07  E-value=3.4e-10  Score=100.43  Aligned_cols=104  Identities=12%  Similarity=-0.046  Sum_probs=76.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      ..++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++++.++  .  +++++++|+.++.....        
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~--~v~~~~~d~~~~~~~~~--------  125 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--H--KVIPLKGLWEDVAPTLP--------  125 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--S--EEEEEESCHHHHGGGSC--------
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--C--CeEEEecCHHHhhcccC--------
Confidence            45788999999999999999988665 99999999999999999988766  3  69999999988643211        


Q ss_pred             ccCCCCCCCCcccEEEEC-----ChhhhH----HHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        239 QSEGNSTGGTAVARVIMN-----LPATAV----EYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~n-----pP~~a~----~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                              ...||.|++|     .+....    .++..+.. |+++        |++.+..+.
T Consensus       126 --------~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~Lkpg--------G~l~~~~~~  172 (236)
T 1zx0_A          126 --------DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG--------GVLTYCNLT  172 (236)
T ss_dssp             --------TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE--------EEEEECCHH
T ss_pred             --------CCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCC--------eEEEEEecC
Confidence                    1359999992     222111    23444544 6765        777765544

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.07  E-value=3.3e-10  Score=99.61  Aligned_cols=103  Identities=19%  Similarity=0.086  Sum_probs=78.2

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-C--CEEEEEeCCHHHHHHHHHHHHHhCCCC----CCCeEEEeccHHHHHHHHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-G--AIVAANDLNPDSYAWLQASIRLNERQV----KTPISATQKDARDFLQTDARA  232 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g--~~V~avD~~~~a~~~a~~N~~~n~~~l----~~~v~~~~~D~~~~~~~~~~~  232 (324)
                      +.++.+|||+|||+|.++..+++. |  .+|+++|+++.+++.+++|+..++  +    .++++++++|+......    
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~v~~~~~d~~~~~~~----  148 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDD--PTLLSSGRVQLVVGDGRMGYAE----  148 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHC--THHHHTSSEEEEESCGGGCCGG----
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc--ccccCCCcEEEEECCcccCccc----
Confidence            568899999999999999999985 3  599999999999999999999876  5    34799999998753221    


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                    ...||.|+++.|..  .+++.+.. |+++        |.+.+.....
T Consensus       149 --------------~~~fD~i~~~~~~~--~~~~~~~~~Lkpg--------G~lv~~~~~~  185 (226)
T 1i1n_A          149 --------------EAPYDAIHVGAAAP--VVPQALIDQLKPG--------GRLILPVGPA  185 (226)
T ss_dssp             --------------GCCEEEEEECSBBS--SCCHHHHHTEEEE--------EEEEEEESCT
T ss_pred             --------------CCCcCEEEECCchH--HHHHHHHHhcCCC--------cEEEEEEecC
Confidence                          13499999998752  23344444 6664        7776655443

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.07  E-value=2.1e-10  Score=99.40  Aligned_cols=98  Identities=15%  Similarity=0.136  Sum_probs=77.8

Q ss_pred             CEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCC
Q psy16898        164 DLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEG  242 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~  242 (324)
                      .+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++..++  +.++++++++|+.++...              
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~--------------  108 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADAN--LNDRIQIVQGDVHNIPIE--------------  108 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECBTTBCSSC--------------
T ss_pred             CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhcc--ccCceEEEEcCHHHCCCC--------------
Confidence            39999999999999999996 6699999999999999999999998  877899999998763211              


Q ss_pred             CCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        243 NSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       243 ~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                          ...||+|+++..-    ....++..+.. |+++        |.+.+..
T Consensus       109 ----~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg--------G~l~~~~  148 (219)
T 3dlc_A          109 ----DNYADLIVSRGSVFFWEDVATAFREIYRILKSG--------GKTYIGG  148 (219)
T ss_dssp             ----TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE--------EEEEEEE
T ss_pred             ----cccccEEEECchHhhccCHHHHHHHHHHhCCCC--------CEEEEEe
Confidence                2459999997532    13456666666 7765        7766543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.07  E-value=5e-10  Score=104.40  Aligned_cols=102  Identities=12%  Similarity=0.056  Sum_probs=81.3

Q ss_pred             EEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCC
Q psy16898        165 LVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEG  242 (324)
Q Consensus       165 ~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~  242 (324)
                      +|||+|||+|.++..+++  .+.+|++||+++.+++.|++++..+.  - .+++++.+|+++++....            
T Consensus        92 rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~--~-~rv~v~~~Da~~~l~~~~------------  156 (317)
T 3gjy_A           92 RITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR--A-PRVKIRVDDARMVAESFT------------  156 (317)
T ss_dssp             EEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC--T-TTEEEEESCHHHHHHTCC------------
T ss_pred             EEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC--C-CceEEEECcHHHHHhhcc------------
Confidence            999999999999999998  46799999999999999999986543  2 389999999999875421            


Q ss_pred             CCCCCCcccEEEECChhh--------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        243 NSTGGTAVARVIMNLPAT--------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       243 ~~~~~~~fD~Vi~npP~~--------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                          ...||+|++|.+..        ..+|+..+.. |+++        |++.+.+.+..
T Consensus       157 ----~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~Lkpg--------Gvlv~~~~~~~  204 (317)
T 3gjy_A          157 ----PASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPG--------GLYVANCGDHS  204 (317)
T ss_dssp             ----TTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEE--------EEEEEEEEECT
T ss_pred             ----CCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCC--------cEEEEEecCCc
Confidence                13599999986431        2578888877 8876        88877776544

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.07  E-value=1.1e-09  Score=101.59  Aligned_cols=108  Identities=11%  Similarity=0.051  Sum_probs=79.7

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHH-hCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRL-NERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~-n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      .++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.+++++.. +......+++++.+|+.+++....       
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~-------  166 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTP-------  166 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSC-------
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhcc-------
Confidence            56789999999999999999986  45999999999999999998742 110012479999999998765310       


Q ss_pred             cccCCCCCCCCcccEEEECChhhh--------HHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPATA--------VEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~a--------~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                               ...||+|++|+|...        .+++..+.. |+++        |++.+.+-++
T Consensus       167 ---------~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg--------G~lv~~~~~~  213 (304)
T 3bwc_A          167 ---------DNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPD--------GICCNQGESI  213 (304)
T ss_dssp             ---------TTCEEEEEEECC---------CCHHHHHHHHHHEEEE--------EEEEEEECCT
T ss_pred             ---------CCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCC--------cEEEEecCCc
Confidence                     135999999986521        467777666 7765        7777665443

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.07  E-value=2.8e-10  Score=101.51  Aligned_cols=101  Identities=12%  Similarity=-0.052  Sum_probs=77.3

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      ..+|.+|||+|||+|..+..+++.+ ++|++||+||.+++.|++++...+  .  ++.++.+|+.+......        
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~--~--~~~~~~~~a~~~~~~~~--------  125 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--H--KVIPLKGLWEDVAPTLP--------  125 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS--S--EEEEEESCHHHHGGGSC--------
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC--C--ceEEEeehHHhhccccc--------
Confidence            3578999999999999999999864 599999999999999999998776  4  58999999988765421        


Q ss_pred             ccCCCCCCCCcccEEEECChhh---------hHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        239 QSEGNSTGGTAVARVIMNLPAT---------AVEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~---------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                              ...||.|+.|+...         ...++..+.. ||++        |.+.++
T Consensus       126 --------~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPG--------G~l~f~  169 (236)
T 3orh_A          126 --------DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG--------GVLTYC  169 (236)
T ss_dssp             --------TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE--------EEEEEC
T ss_pred             --------ccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCC--------CEEEEE
Confidence                    24599999986432         1234554444 7775        776544

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.07  E-value=2.9e-10  Score=103.35  Aligned_cols=48  Identities=21%  Similarity=0.114  Sum_probs=44.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLN  207 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n  207 (324)
                      +.++.+|||+|||+|.+++.++++|++|+|+|+|+.|++.|++|+..+
T Consensus        43 l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~   90 (261)
T 3iv6_A           43 IVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADR   90 (261)
T ss_dssp             CCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSS
T ss_pred             CCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc
Confidence            457899999999999999999999999999999999999999988654

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.06  E-value=5.3e-10  Score=97.02  Aligned_cols=101  Identities=14%  Similarity=0.102  Sum_probs=76.6

Q ss_pred             hhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        158 KEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       158 ~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      ..+.++.+|||+|||+|.++..+++.|++|+|+|+|+.+++.+++    ++  .. +++++++|+.++ ..         
T Consensus        42 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~----~~--~~-~~~~~~~d~~~~-~~---------  104 (218)
T 3ou2_A           42 RAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR----HG--LD-NVEFRQQDLFDW-TP---------  104 (218)
T ss_dssp             TTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG----GC--CT-TEEEEECCTTSC-CC---------
T ss_pred             hcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh----cC--CC-CeEEEecccccC-CC---------
Confidence            345678899999999999999999998999999999999999987    55  54 799999998765 11         


Q ss_pred             cccCCCCCCCCcccEEEECC-----hhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        238 SQSEGNSTGGTAVARVIMNL-----PAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~np-----P~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                               ...||.|+++-     |.. ...++..+.. |+++        |.+.+..+.+
T Consensus       105 ---------~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg--------G~l~~~~~~~  149 (218)
T 3ou2_A          105 ---------DRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPG--------GVVEFVDVTD  149 (218)
T ss_dssp             ---------SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEECC
T ss_pred             ---------CCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCC--------eEEEEEeCCC
Confidence                     24599999863     221 2456666665 7765        6666555443

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.06  E-value=4.2e-10  Score=97.39  Aligned_cols=115  Identities=17%  Similarity=0.107  Sum_probs=75.0

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHH-HHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTD-ARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~-~~~~~~~~~  238 (324)
                      +.+|.+|||+|||+|.++..+++++++|+|+|+++.           ..  ++ +++++++|+.+..... ..+.+... 
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~-----------~~--~~-~v~~~~~D~~~~~~~~~~~~~~~~~-   87 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEM-----------EE--IA-GVRFIRCDIFKETIFDDIDRALREE-   87 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCC-----------CC--CT-TCEEEECCTTSSSHHHHHHHHHHHH-
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHcCCcEEEEecccc-----------cc--CC-CeEEEEccccCHHHHHHHHHHhhcc-
Confidence            568999999999999999999999889999999984           13  44 6999999987632111 11000000 


Q ss_pred             ccCCCCCCCCcccEEEECChhhh-----H----------HHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhHh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPATA-----V----------EYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKI  302 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~a-----~----------~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v  302 (324)
                             ....||+|++|+|...     .          ..+..+.. |+        +||.+.+..|...........+
T Consensus        88 -------~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lk--------pGG~lv~k~~~~~~~~~~~~~l  152 (191)
T 3dou_A           88 -------GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLR--------NGGNVLLKQFQGDMTNDFIAIW  152 (191)
T ss_dssp             -------TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE--------EEEEEEEEEECSTHHHHHHHHH
T ss_pred             -------cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHcc--------CCCEEEEEEcCCCCHHHHHHHH
Confidence                   0024999999975311     1          12222222 44        4599999888776655555555


Q ss_pred             hh
Q psy16898        303 KS  304 (324)
Q Consensus       303 ~~  304 (324)
                      +.
T Consensus       153 ~~  154 (191)
T 3dou_A          153 RK  154 (191)
T ss_dssp             GG
T ss_pred             HH
Confidence            43

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.06  E-value=5.1e-10  Score=96.52  Aligned_cols=98  Identities=12%  Similarity=0.117  Sum_probs=75.4

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      .+.+|||+|||+|.++..+++.|++|+|+|+|+.+++.++++    .   . +++++++|+.++...             
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~----~---~-~~~~~~~d~~~~~~~-------------   99 (203)
T 3h2b_A           41 VDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQT----H---P-SVTFHHGTITDLSDS-------------   99 (203)
T ss_dssp             CCSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHH----C---T-TSEEECCCGGGGGGS-------------
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHh----C---C-CCeEEeCcccccccC-------------
Confidence            378999999999999999999999999999999999999876    2   1 588999999874311             


Q ss_pred             CCCCCCCcccEEEECC-----h-hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        242 GNSTGGTAVARVIMNL-----P-ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~np-----P-~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                           ...||.|+++.     | .....++..+.. |+++        |.+.+..+...
T Consensus       100 -----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg--------G~l~i~~~~~~  145 (203)
T 3h2b_A          100 -----PKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDG--------GGLLMSFFSGP  145 (203)
T ss_dssp             -----CCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEE--------EEEEEEEECCS
T ss_pred             -----CCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCC--------cEEEEEEccCC
Confidence                 24599999952     2 234567777766 7765        77776665543

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.06  E-value=8e-10  Score=103.09  Aligned_cols=105  Identities=12%  Similarity=0.067  Sum_probs=79.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHh--CCCC-CCCeEEEeccHHHHHHHHHHHhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLN--ERQV-KTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n--~~~l-~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      ..++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.|++|+...  +  + ..+++++.+|+.+++...     
T Consensus       106 ~~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~--~~~~rv~~~~~D~~~~l~~~-----  178 (314)
T 2b2c_A          106 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCG--FSHPKLDLFCGDGFEFLKNH-----  178 (314)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGG--GGCTTEEEECSCHHHHHHHC-----
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccc--cCCCCEEEEEChHHHHHHhc-----
Confidence            346789999999999999999985  469999999999999999998653  3  4 348999999999876541     


Q ss_pred             hhhcccCCCCCCCCcccEEEECChhh--------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNLPAT--------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~npP~~--------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                                  ...||+|++|++..        ..++++.+.. |+++        |++.+..-+
T Consensus       179 ------------~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~Lkpg--------G~lv~~~~~  224 (314)
T 2b2c_A          179 ------------KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKED--------GILSSQGES  224 (314)
T ss_dssp             ------------TTCEEEEEECCC-------------HHHHHHHHEEEE--------EEEEEECCC
T ss_pred             ------------CCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCC--------eEEEEECCC
Confidence                        23599999998541        1456666665 7765        887776533

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.06  E-value=1.3e-10  Score=104.53  Aligned_cols=83  Identities=16%  Similarity=0.274  Sum_probs=66.2

Q ss_pred             HHHhh--ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898        155 RVTKE--VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA  232 (324)
Q Consensus       155 ~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~  232 (324)
                      ++++.  +.++.+|||+|||+|.++..+++++++|+|+|+++.+++.+++|+..    . ++++++++|+.++....   
T Consensus        21 ~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~----~-~~v~~~~~D~~~~~~~~---   92 (244)
T 1qam_A           21 KIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD----H-DNFQVLNKDILQFKFPK---   92 (244)
T ss_dssp             HHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT----C-CSEEEECCCGGGCCCCS---
T ss_pred             HHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhcc----C-CCeEEEEChHHhCCccc---
Confidence            35544  34788999999999999999999999999999999999999998863    2 27999999998642110   


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                    ...| .|++|||+.
T Consensus        93 --------------~~~~-~vv~nlPy~  105 (244)
T 1qam_A           93 --------------NQSY-KIFGNIPYN  105 (244)
T ss_dssp             --------------SCCC-EEEEECCGG
T ss_pred             --------------CCCe-EEEEeCCcc
Confidence                          0124 799999995

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.05  E-value=7.4e-10  Score=100.87  Aligned_cols=105  Identities=15%  Similarity=0.049  Sum_probs=80.3

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      .+.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++..++  +..+++++++|+.+....         
T Consensus        61 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~---------  129 (298)
T 1ri5_A           61 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK--RRFKVFFRAQDSYGRHMD---------  129 (298)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSC--CSSEEEEEESCTTTSCCC---------
T ss_pred             hCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CCccEEEEECCccccccC---------
Confidence            357889999999999999999998776 99999999999999999999887  755799999998764210         


Q ss_pred             cccCCCCCCCCcccEEEECCh--------hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        238 SQSEGNSTGGTAVARVIMNLP--------ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP--------~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                              ....||.|+++..        .....++..+.. |+++        |.+.+...
T Consensus       130 --------~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~  175 (298)
T 1ri5_A          130 --------LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG--------GYFIMTVP  175 (298)
T ss_dssp             --------CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEE--------EEEEEEEE
T ss_pred             --------CCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCC--------CEEEEEEC
Confidence                    0245999998632        223456666655 6665        66665543

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.05  E-value=1.2e-10  Score=109.58  Aligned_cols=75  Identities=16%  Similarity=0.135  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcC-------CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRG-------AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g-------~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      ++.+|||+|||+|.+++.+++..       ..|+|+|+++.+++.|+.|+..++  +  ++.++++|+.....       
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g--~--~~~i~~~D~l~~~~-------  198 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR--Q--KMTLLHQDGLANLL-------  198 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT--C--CCEEEESCTTSCCC-------
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC--C--CceEEECCCCCccc-------
Confidence            56799999999999999998743       689999999999999999999998  7  48999999865210       


Q ss_pred             hhhcccCCCCCCCCcccEEEECChh
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNLPA  259 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~npP~  259 (324)
                                  ...||.|++|||.
T Consensus       199 ------------~~~fD~Ii~NPPf  211 (344)
T 2f8l_A          199 ------------VDPVDVVISDLPV  211 (344)
T ss_dssp             ------------CCCEEEEEEECCC
T ss_pred             ------------cCCccEEEECCCC
Confidence                        2459999999993

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.05  E-value=1.6e-10  Score=118.76  Aligned_cols=113  Identities=19%  Similarity=0.197  Sum_probs=82.1

Q ss_pred             EeCCeEEEEeccce------e---ecCcChHHHHH--HHhh--ccCCCEEEEEcCCCchhHHHHHhcC------------
Q psy16898        130 KENGCTFKMDFSKV------Y---WNSRLSTEHER--VTKE--VREGDLVLDVFAGVGPFSIPAARRG------------  184 (324)
Q Consensus       130 ~e~g~~f~id~~~~------f---~~~r~~~e~~~--~~~~--~~~g~~VLDl~~G~G~~al~~a~~g------------  184 (324)
                      ..+.+.+.+|.+.-      |   .......|...  ++..  ..++..|||+|||+|+|++.+|..+            
T Consensus       145 ~~~~~~l~ld~sg~~LhkRgyr~~~~~apl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f  224 (703)
T 3v97_A          145 HKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRW  224 (703)
T ss_dssp             ETTEEEEEEESSSSCTTCCSSSCSSCCCSSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCC
T ss_pred             ECCEEEEEEecCCCccccccccccCCCCCCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCcccc
Confidence            34667778886641      1   11111223331  2222  4578899999999999999998742            


Q ss_pred             --------------------------------CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898        185 --------------------------------AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA  232 (324)
Q Consensus       185 --------------------------------~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~  232 (324)
                                                      ..|+|+|+++.|++.|++|+..++  +.+.+++.++|+.++.....  
T Consensus       225 ~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~ag--v~~~i~~~~~D~~~~~~~~~--  300 (703)
T 3v97_A          225 GFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAG--IGELITFEVKDVAQLTNPLP--  300 (703)
T ss_dssp             TTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEECCGGGCCCSCT--
T ss_pred             chhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChhhCccccc--
Confidence                                            479999999999999999999999  98779999999987421100  


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                    ...||+||+|||+.
T Consensus       301 --------------~~~~d~Iv~NPPYG  314 (703)
T 3v97_A          301 --------------KGPYGTVLSNPPYG  314 (703)
T ss_dssp             --------------TCCCCEEEECCCCC
T ss_pred             --------------cCCCCEEEeCCCcc
Confidence                          11599999999985

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.05  E-value=1.1e-09  Score=103.10  Aligned_cols=103  Identities=14%  Similarity=0.072  Sum_probs=80.6

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHh--CCCC-CCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLN--ERQV-KTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n--~~~l-~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      .++.+|||+|||+|.++..+++.  +.+|+++|+|+.+++.|++|+...  +  + ..+++++.+|+.+++....     
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~g--l~~~rv~~~~~D~~~~l~~~~-----  191 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIG--YEDPRVNLVIGDGVAFLKNAA-----  191 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG--GGSTTEEEEESCHHHHHHTSC-----
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccc--cCCCcEEEEECCHHHHHHhcc-----
Confidence            46789999999999999999986  469999999999999999998753  4  4 2479999999998765321     


Q ss_pred             hhcccCCCCCCCCcccEEEECChhh--------hHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLPAT--------AVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP~~--------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                                 ...||+|++|++..        ..+++..+.. |+++        |++.+..
T Consensus       192 -----------~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg--------G~lv~~~  235 (334)
T 1xj5_A          192 -----------EGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG--------GVVCTQA  235 (334)
T ss_dssp             -----------TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE--------EEEEEEC
T ss_pred             -----------CCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCC--------cEEEEec
Confidence                       13599999998621        2467777766 7765        7777753

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.04  E-value=2.6e-10  Score=104.64  Aligned_cols=107  Identities=21%  Similarity=0.284  Sum_probs=73.0

Q ss_pred             CeEEEEeccceeecCcChHHHHHHHhh--ccCCCEEEEEcCCCchhHHHHHhcCCE----EEEEeCCHHHHHHHHHHHHH
Q psy16898        133 GCTFKMDFSKVYWNSRLSTEHERVTKE--VREGDLVLDVFAGVGPFSIPAARRGAI----VAANDLNPDSYAWLQASIRL  206 (324)
Q Consensus       133 g~~f~id~~~~f~~~r~~~e~~~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~~----V~avD~~~~a~~~a~~N~~~  206 (324)
                      |++.+-.+++-|+.+....  .++++.  +.++.+|||+|||+|.++..+++++..    |+|+|+++.+++.+++|.  
T Consensus        13 ~~~~~k~~GQ~fL~d~~i~--~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--   88 (279)
T 3uzu_A           13 GHFARKRFGQNFLVDHGVI--DAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--   88 (279)
T ss_dssp             -----CCCSCCEECCHHHH--HHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--
T ss_pred             CCCccccCCccccCCHHHH--HHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--
Confidence            4555555666555333222  234443  457899999999999999999998776    999999999999999994  


Q ss_pred             hCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        207 NERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       207 n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      ..     +++++++|+.++......+        +    .....+.||.|||+.
T Consensus        89 ~~-----~v~~i~~D~~~~~~~~~~~--------~----~~~~~~~vv~NlPY~  125 (279)
T 3uzu_A           89 GE-----LLELHAGDALTFDFGSIAR--------P----GDEPSLRIIGNLPYN  125 (279)
T ss_dssp             GG-----GEEEEESCGGGCCGGGGSC--------S----SSSCCEEEEEECCHH
T ss_pred             CC-----CcEEEECChhcCChhHhcc--------c----ccCCceEEEEccCcc
Confidence            32     6999999998764321100        0    001246899999995

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.04  E-value=2.6e-10  Score=104.22  Aligned_cols=101  Identities=11%  Similarity=0.012  Sum_probs=78.3

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.++.+|||+|||+|.++..+++.   +++|+|+|+|+.+++.|++++..++  .  +++++.+|+.++..         
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~--~v~~~~~d~~~~~~---------   86 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--Y--DSEFLEGDATEIEL---------   86 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS--S--EEEEEESCTTTCCC---------
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC--C--ceEEEEcchhhcCc---------
Confidence            457889999999999999999985   6799999999999999999998766  4  69999999886422         


Q ss_pred             hcccCCCCCCCCcccEEEECChhh----hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT----AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~----a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                                ...||.|+++..-.    ...++..+.. |+++        |++.+....
T Consensus        87 ----------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~  128 (284)
T 3gu3_A           87 ----------NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKG--------GKIICFEPH  128 (284)
T ss_dssp             ----------SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEE--------EEEEEEECC
T ss_pred             ----------CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCC--------CEEEEEecc
Confidence                      13599999964321    2356666655 7765        777765544

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.04  E-value=7.3e-11  Score=104.80  Aligned_cols=100  Identities=8%  Similarity=-0.012  Sum_probs=74.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCC-HHHHHHH---HHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLN-PDSYAWL---QASIRLNERQVKTPISATQKDARDFLQTDARAH  233 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~-~~a~~~a---~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~  233 (324)
                      ..++.+|||+|||+|.+++.+|+  .++.|+|+|+| +.+++.|   ++++..++  +. ++.++++|+.++....    
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~--~~-~v~~~~~d~~~l~~~~----   94 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGG--LS-NVVFVIAAAESLPFEL----   94 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTC--CS-SEEEECCBTTBCCGGG----
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcC--CC-CeEEEEcCHHHhhhhc----
Confidence            45788999999999999999995  46699999999 5555555   88888888  76 7999999998763211    


Q ss_pred             hhhhcccCCCCCCCCcccEEEECChhhh---------HHHHHHHhc-cchhhcCCCCCCCEEEE
Q psy16898        234 LVRWSQSEGNSTGGTAVARVIMNLPATA---------VEYVRYLKV-LTREEFGKLSRPPVLYL  287 (324)
Q Consensus       234 ~~~~~~~~~~~~~~~~fD~Vi~npP~~a---------~~~l~~~~~-l~~~~~~~~~~~g~vh~  287 (324)
                                   ...+|.|.+++|...         ..++..+.. |+++        |.+.+
T Consensus        95 -------------~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpG--------G~l~i  137 (225)
T 3p2e_A           95 -------------KNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKE--------AHFEF  137 (225)
T ss_dssp             -------------TTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEE--------EEEEE
T ss_pred             -------------cCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCC--------cEEEE
Confidence                         123888999987432         234555555 6665        77776

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.04  E-value=7.3e-10  Score=97.83  Aligned_cols=90  Identities=14%  Similarity=0.096  Sum_probs=72.9

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      ++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.+++++..++  +  +++++++|+.++..              
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~--~--~~~~~~~d~~~~~~--------------   98 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQG--L--KPRLACQDISNLNI--------------   98 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTT--C--CCEEECCCGGGCCC--------------
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcC--C--CeEEEecccccCCc--------------
Confidence            67899999999999999999999999999999999999999998877  5  58999999876421              


Q ss_pred             CCCCCCCcccEEEECC-h-------hhhHHHHHHHhc-cchh
Q psy16898        242 GNSTGGTAVARVIMNL-P-------ATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~np-P-------~~a~~~l~~~~~-l~~~  274 (324)
                           ...||.|+++. .       .....++..+.. |+++
T Consensus        99 -----~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pg  135 (246)
T 1y8c_A           99 -----NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG  135 (246)
T ss_dssp             -----SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEE
T ss_pred             -----cCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCC
Confidence                 13499999976 1       223456666665 6665

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.04  E-value=8.8e-10  Score=95.69  Aligned_cols=100  Identities=15%  Similarity=0.078  Sum_probs=75.5

Q ss_pred             HHHhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898        155 RVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       155 ~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      .++..+.++.+|||+|||+|.++..+++.|++|+|+|+|+.+++.+++++   +      +.+.++|+.++. .      
T Consensus        36 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~---~------~~~~~~d~~~~~-~------   99 (211)
T 3e23_A           36 KFLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL---G------RPVRTMLFHQLD-A------   99 (211)
T ss_dssp             HHHTTSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---T------SCCEECCGGGCC-C------
T ss_pred             HHHHhcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc---C------CceEEeeeccCC-C------
Confidence            45666778999999999999999999999999999999999999999887   3      345677876543 1      


Q ss_pred             hhhcccCCCCCCCCcccEEEECCh------hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNLP------ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~npP------~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                                  ...||.|+++..      .....++..+.. |+++        |.+.+...
T Consensus       100 ------------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~  142 (211)
T 3e23_A          100 ------------IDAYDAVWAHACLLHVPRDELADVLKLIWRALKPG--------GLFYASYK  142 (211)
T ss_dssp             ------------CSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEE
T ss_pred             ------------CCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCC--------cEEEEEEc
Confidence                        246999999742      123456666666 7765        66655443

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.03  E-value=1.4e-09  Score=105.57  Aligned_cols=62  Identities=19%  Similarity=0.329  Sum_probs=54.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-CC-EEEEEeCCHHHHHHH-------HHHHHHhCCCCC-CCeEEEeccHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-GA-IVAANDLNPDSYAWL-------QASIRLNERQVK-TPISATQKDAR  223 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g~-~V~avD~~~~a~~~a-------~~N~~~n~~~l~-~~v~~~~~D~~  223 (324)
                      +.++.+|||+|||+|.+++.+|+. ++ +|+|+|+++.+++.|       ++|++.++  +. ++++++++|..
T Consensus       240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G--l~~~nV~~i~gD~~  311 (433)
T 1u2z_A          240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG--MRLNNVEFSLKKSF  311 (433)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT--BCCCCEEEEESSCS
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC--CCCCceEEEEcCcc
Confidence            458899999999999999999984 54 899999999999999       99999888  74 68999998654

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.02  E-value=2.1e-09  Score=98.01  Aligned_cols=105  Identities=15%  Similarity=0.065  Sum_probs=78.1

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCC---CCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVK---TPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~---~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      .++.+|||+|||+|.++..+++.|++|+|+|+|+.+++.|++|+...+  ..   .++.+..+|+.++......      
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~~~~------  127 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRR--KEPAFDKWVIEEANWLTLDKDVPA------  127 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--TSHHHHTCEEEECCGGGHHHHSCC------
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcc--cccccceeeEeecChhhCcccccc------
Confidence            467899999999999999999999999999999999999999986543  22   2688999999886532200      


Q ss_pred             cccCCCCCCCCcccEEEECC------hh------hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        238 SQSEGNSTGGTAVARVIMNL------PA------TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~np------P~------~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                               ...||.|++..      |.      ....++..+.. |+++        |++.+...
T Consensus       128 ---------~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~  176 (293)
T 3thr_A          128 ---------GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG--------GLLVIDHR  176 (293)
T ss_dssp             ---------TTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEE--------EEEEEEEE
T ss_pred             ---------CCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCC--------eEEEEEeC
Confidence                     24599999851      11      13456666655 7765        77665543

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.02  E-value=7.8e-10  Score=97.77  Aligned_cols=106  Identities=15%  Similarity=0.076  Sum_probs=79.9

Q ss_pred             HHhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        156 VTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       156 ~~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      +...+.++.+|||+|||+|.++..+++.|++|+|+|+|+.+++.++++.   .  . .+++++++|+.++...       
T Consensus        47 l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~---~--~-~~~~~~~~d~~~~~~~-------  113 (242)
T 3l8d_A           47 FEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERG---E--G-PDLSFIKGDLSSLPFE-------  113 (242)
T ss_dssp             HHHHSCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTT---C--B-TTEEEEECBTTBCSSC-------
T ss_pred             HHHHcCCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhc---c--c-CCceEEEcchhcCCCC-------
Confidence            4445778999999999999999999999999999999999999998874   2  2 3699999998764211       


Q ss_pred             hhcccCCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                                 ...||.|++.-.-    ....++..+.. |+++        |.+.+..+...
T Consensus       114 -----------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg--------G~l~i~~~~~~  157 (242)
T 3l8d_A          114 -----------NEQFEAIMAINSLEWTEEPLRALNEIKRVLKSD--------GYACIAILGPT  157 (242)
T ss_dssp             -----------TTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEE--------EEEEEEEECTT
T ss_pred             -----------CCCccEEEEcChHhhccCHHHHHHHHHHHhCCC--------eEEEEEEcCCc
Confidence                       2459999985211    13456666666 7765        77777765554

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.02  E-value=1.5e-09  Score=92.16  Aligned_cols=100  Identities=13%  Similarity=0.032  Sum_probs=75.0

Q ss_pred             hhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        158 KEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       158 ~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      ..+.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++.        ++.++++|+.+....         
T Consensus        42 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~--------~~~~~~~d~~~~~~~---------  104 (195)
T 3cgg_A           42 AMAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFP--------EARWVVGDLSVDQIS---------  104 (195)
T ss_dssp             HHSCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT--------TSEEEECCTTTSCCC---------
T ss_pred             HhccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCC--------CCcEEEcccccCCCC---------
Confidence            346788999999999999999999998999999999999999987642        478899998763210         


Q ss_pred             cccCCCCCCCCcccEEEECChh-------hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPA-------TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~-------~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                               ...||.|+++++.       ....++..+.. ++++        |.+.+....
T Consensus       105 ---------~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--------G~l~~~~~~  149 (195)
T 3cgg_A          105 ---------ETDFDLIVSAGNVMGFLAEDGREPALANIHRALGAD--------GRAVIGFGA  149 (195)
T ss_dssp             ---------CCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEET
T ss_pred             ---------CCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCC--------CEEEEEeCC
Confidence                     2359999998542       12456666665 6665        666654433

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.01  E-value=5.5e-10  Score=101.24  Aligned_cols=103  Identities=15%  Similarity=-0.014  Sum_probs=74.9

Q ss_pred             HHhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        156 VTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       156 ~~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      +.+....+.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++        .+ +++++++|+.++...       
T Consensus        33 l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~--------~~-~v~~~~~~~e~~~~~-------   96 (257)
T 4hg2_A           33 LGEVAPARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR--------HP-RVTYAVAPAEDTGLP-------   96 (257)
T ss_dssp             HHHHSSCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC--------CT-TEEEEECCTTCCCCC-------
T ss_pred             HHHhcCCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh--------cC-Cceeehhhhhhhccc-------
Confidence            33445567899999999999999999999999999999999987642        22 699999998764221       


Q ss_pred             hhcccCCCCCCCCcccEEEECChh---hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLPA---TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP~---~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                                 ...||.|++.---   ....++..+.. |+++        |.+.+.++...
T Consensus        97 -----------~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpg--------G~l~~~~~~~~  139 (257)
T 4hg2_A           97 -----------PASVDVAIAAQAMHWFDLDRFWAELRRVARPG--------AVFAAVTYGLT  139 (257)
T ss_dssp             -----------SSCEEEEEECSCCTTCCHHHHHHHHHHHEEEE--------EEEEEEEECCC
T ss_pred             -----------CCcccEEEEeeehhHhhHHHHHHHHHHHcCCC--------CEEEEEECCCC
Confidence                       2469999985211   01235555555 7776        88877766554

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.01  E-value=1.9e-09  Score=98.93  Aligned_cols=108  Identities=12%  Similarity=0.060  Sum_probs=82.6

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCC-CCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQV-KTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l-~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      .++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.|++++..++..+ ..+++++.+|+.+++...        
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--------  148 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV--------  148 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC--------
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC--------
Confidence            46789999999999999999985  3599999999999999999986431002 247999999999876542        


Q ss_pred             cccCCCCCCCCcccEEEECChhh-----h---HHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPAT-----A---VEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~-----a---~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                               ...||+|++|++..     .   .++++.+.. |+++        |++.+.+.+..
T Consensus       149 ---------~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg--------G~lv~~~~~~~  196 (283)
T 2i7c_A          149 ---------TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPN--------GYCVAQCESLW  196 (283)
T ss_dssp             ---------CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEE--------EEEEEECCCTT
T ss_pred             ---------CCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCC--------cEEEEECCCcc
Confidence                     14599999987531     1   477777766 7775        88877755443

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.00  E-value=1.1e-09  Score=99.09  Aligned_cols=100  Identities=17%  Similarity=0.234  Sum_probs=79.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.++.+|||+|||+|.++..+++.  +.+|+++|+|+.+++.+++++..++  ++ +++++.+|+.++...         
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~-~~~~~~~d~~~~~~~---------  102 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG--IK-NVKFLQANIFSLPFE---------  102 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT--CC-SEEEEECCGGGCCSC---------
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CC-CcEEEEcccccCCCC---------
Confidence            468899999999999999999986  6799999999999999999999998  76 799999999864321         


Q ss_pred             cccCCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                               ...||.|+++..-    ....++..+.. |+++        |++.+.
T Consensus       103 ---------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg--------G~l~~~  141 (276)
T 3mgg_A          103 ---------DSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPG--------GTITVI  141 (276)
T ss_dssp             ---------TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE--------EEEEEE
T ss_pred             ---------CCCeeEEEEechhhhcCCHHHHHHHHHHHcCCC--------cEEEEE
Confidence                     2459999986321    12356777766 7775        766654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.00  E-value=8.7e-10  Score=110.76  Aligned_cols=79  Identities=16%  Similarity=0.085  Sum_probs=67.5

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .+.++.+|||+|||.|.++..+|+.|+.|+|||.++.+++.|+..+..++  .- ++++.++++.++.....        
T Consensus        63 ~~~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~--~~-~~~~~~~~~~~~~~~~~--------  131 (569)
T 4azs_A           63 ALGRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENP--DF-AAEFRVGRIEEVIAALE--------  131 (569)
T ss_dssp             HHTSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTST--TS-EEEEEECCHHHHHHHCC--------
T ss_pred             hcCCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcC--CC-ceEEEECCHHHHhhhcc--------
Confidence            35577899999999999999999999999999999999999999998876  44 69999999998865421        


Q ss_pred             ccCCCCCCCCcccEEEEC
Q psy16898        239 QSEGNSTGGTAVARVIMN  256 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~n  256 (324)
                              ..+||+|++-
T Consensus       132 --------~~~fD~v~~~  141 (569)
T 4azs_A          132 --------EGEFDLAIGL  141 (569)
T ss_dssp             --------TTSCSEEEEE
T ss_pred             --------CCCccEEEEC
Confidence                    2359999873

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.99  E-value=7.7e-10  Score=98.29  Aligned_cols=100  Identities=14%  Similarity=0.064  Sum_probs=75.6

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      ++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.|++++..++  .. ++.++++|+.++...            
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~-~~~~~~~d~~~~~~~------------  143 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG--KR-VRNYFCCGLQDFTPE------------  143 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG--GG-EEEEEECCGGGCCCC------------
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC--Cc-eEEEEEcChhhcCCC------------
Confidence            588999999999999999998755 99999999999999999988764  33 689999998764221            


Q ss_pred             CCCCCCCCcccEEEECC-----hhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        241 EGNSTGGTAVARVIMNL-----PAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~np-----P~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                            ...||.|+++-     |.. ...++..+.. |+++        |.+.+..+
T Consensus       144 ------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~  186 (241)
T 2ex4_A          144 ------PDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN--------GIIVIKDN  186 (241)
T ss_dssp             ------SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEE
T ss_pred             ------CCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCC--------eEEEEEEc
Confidence                  13599999972     221 2356666655 7765        77666544

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.99  E-value=5.7e-10  Score=97.33  Aligned_cols=98  Identities=12%  Similarity=0.077  Sum_probs=73.7

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .++.+|||+|||+|.++..+++.+++|+|+|+|+.+++.+++++.  .     +++++++|+.++...            
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~--~-----~~~~~~~d~~~~~~~------------  104 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP--K-----EFSITEGDFLSFEVP------------  104 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC--T-----TCCEESCCSSSCCCC------------
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC--C-----ceEEEeCChhhcCCC------------
Confidence            478899999999999999999999999999999999999988765  2     578899998764221            


Q ss_pred             CCCCCCCCcccEEEECCh-----hh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        241 EGNSTGGTAVARVIMNLP-----AT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP-----~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                             ..||.|+++..     .. ...++..+.. |++        ||.+.+.....
T Consensus       105 -------~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp--------gG~l~i~~~~~  148 (220)
T 3hnr_A          105 -------TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNK--------GGKIVFADTIF  148 (220)
T ss_dssp             -------SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCT--------TCEEEEEEECB
T ss_pred             -------CCeEEEEECcchhcCChHHHHHHHHHHHHhcCC--------CCEEEEEeccc
Confidence                   35999999732     21 1235666555 665        48877765443

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.99  E-value=8.8e-10  Score=96.00  Aligned_cols=100  Identities=14%  Similarity=0.060  Sum_probs=76.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.++.+|||+|||+|.++..+++.+   .+|+++|+++.+++.+++++..++  +. ++++.++|+......        
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~-~v~~~~~d~~~~~~~--------  143 (215)
T 2yxe_A           75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG--YD-NVIVIVGDGTLGYEP--------  143 (215)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT--CT-TEEEEESCGGGCCGG--------
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--CC-CeEEEECCcccCCCC--------
Confidence            4678899999999999999999864   799999999999999999999888  76 699999998543221        


Q ss_pred             hcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                                ...||.|+++.+...  +.+.+.. |+++        |.+.+.+-
T Consensus       144 ----------~~~fD~v~~~~~~~~--~~~~~~~~L~pg--------G~lv~~~~  178 (215)
T 2yxe_A          144 ----------LAPYDRIYTTAAGPK--IPEPLIRQLKDG--------GKLLMPVG  178 (215)
T ss_dssp             ----------GCCEEEEEESSBBSS--CCHHHHHTEEEE--------EEEEEEES
T ss_pred             ----------CCCeeEEEECCchHH--HHHHHHHHcCCC--------cEEEEEEC
Confidence                      134999999865421  2233333 6654        77666543

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.99  E-value=6.2e-10  Score=102.38  Aligned_cols=48  Identities=21%  Similarity=0.207  Sum_probs=40.9

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhC
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNE  208 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~  208 (324)
                      .++.+|||+|||+|.+++.+++.  +++|+|+|+++.+++.|++|+..++
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~   94 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYL   94 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhh
Confidence            36889999999999999999996  5699999999999999999977543

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.99  E-value=4e-10  Score=109.91  Aligned_cols=79  Identities=20%  Similarity=0.206  Sum_probs=65.5

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc---------------CCEEEEEeCCHHHHHHHHHHHHHhCCCCCC-CeEEEeccHHH
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR---------------GAIVAANDLNPDSYAWLQASIRLNERQVKT-PISATQKDARD  224 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~---------------g~~V~avD~~~~a~~~a~~N~~~n~~~l~~-~v~~~~~D~~~  224 (324)
                      .++.+|||+|||+|.|.+.+++.               +..++|+|+++.+++.|+.|+..++  +.. ++.+.++|+..
T Consensus       170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g--~~~~~~~i~~gD~l~  247 (445)
T 2okc_A          170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG--IGTDRSPIVCEDSLE  247 (445)
T ss_dssp             CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT--CCSSCCSEEECCTTT
T ss_pred             CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhC--CCcCCCCEeeCCCCC
Confidence            46789999999999999998863               3589999999999999999999998  742 57889999765


Q ss_pred             HHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        225 FLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      ...                   ...||+|++|||..
T Consensus       248 ~~~-------------------~~~fD~Iv~NPPf~  264 (445)
T 2okc_A          248 KEP-------------------STLVDVILANPPFG  264 (445)
T ss_dssp             SCC-------------------SSCEEEEEECCCSS
T ss_pred             Ccc-------------------cCCcCEEEECCCCC
Confidence            311                   12599999999985

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.98  E-value=1.4e-09  Score=97.11  Aligned_cols=103  Identities=20%  Similarity=0.180  Sum_probs=77.1

Q ss_pred             HHHhhcc--CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHH
Q psy16898        155 RVTKEVR--EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDAR  231 (324)
Q Consensus       155 ~~~~~~~--~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~  231 (324)
                      .+.+.+.  ++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++.  .    .+++++++|+.++...   
T Consensus        35 ~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~----~~~~~~~~d~~~~~~~---  105 (253)
T 3g5l_A           35 ELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT--S----PVVCYEQKAIEDIAIE---  105 (253)
T ss_dssp             HHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC--C----TTEEEEECCGGGCCCC---
T ss_pred             HHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc--c----CCeEEEEcchhhCCCC---
Confidence            3444444  788999999999999999999888 99999999999999998776  2    2689999998764211   


Q ss_pred             HhhhhhcccCCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        232 AHLVRWSQSEGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                                     ...||.|+++..-    ....++..+.. |+++        |.+.+..
T Consensus       106 ---------------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~  145 (253)
T 3g5l_A          106 ---------------PDAYNVVLSSLALHYIASFDDICKKVYINLKSS--------GSFIFSV  145 (253)
T ss_dssp             ---------------TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE--------EEEEEEE
T ss_pred             ---------------CCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCC--------cEEEEEe
Confidence                           2459999986422    13456666666 7775        6666543

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.97  E-value=1.1e-09  Score=97.80  Aligned_cols=99  Identities=19%  Similarity=0.123  Sum_probs=75.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +.++.+|||+|||+|.++..+++.+++|+|+|+|+.+++.+++++ ...  . .+++++.+|+.++...           
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~--~-~~~~~~~~d~~~~~~~-----------  101 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGV--D-RKVQVVQADARAIPLP-----------  101 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTS--C-TTEEEEESCTTSCCSC-----------
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hcc--C-CceEEEEcccccCCCC-----------
Confidence            467889999999999999999999899999999999999999998 333  3 3799999998754211           


Q ss_pred             cCCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        240 SEGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                             ...||+|+++..-    ....++..+.. |+++        |.+.+.
T Consensus       102 -------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg--------G~l~~~  140 (263)
T 2yqz_A          102 -------DESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPG--------GALLEG  140 (263)
T ss_dssp             -------TTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEE--------EEEEEE
T ss_pred             -------CCCeeEEEECCchhhcCCHHHHHHHHHHHCCCC--------cEEEEE
Confidence                   2359999986431    12456666655 7765        666554

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.96  E-value=7.4e-10  Score=97.56  Aligned_cols=98  Identities=16%  Similarity=0.163  Sum_probs=74.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++|+..++     +++++++|+.+.+..           
T Consensus        68 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~v~~~~~d~~~~~~~-----------  131 (231)
T 1vbf_A           68 LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN-----NIKLILGDGTLGYEE-----------  131 (231)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS-----SEEEEESCGGGCCGG-----------
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC-----CeEEEECCccccccc-----------
Confidence            4578899999999999999999988999999999999999999987554     699999998762221           


Q ss_pred             cCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                             ...||.|+++.+...  +.+.+.. |+++        |.+.+.+-
T Consensus       132 -------~~~fD~v~~~~~~~~--~~~~~~~~L~pg--------G~l~~~~~  166 (231)
T 1vbf_A          132 -------EKPYDRVVVWATAPT--LLCKPYEQLKEG--------GIMILPIG  166 (231)
T ss_dssp             -------GCCEEEEEESSBBSS--CCHHHHHTEEEE--------EEEEEEEC
T ss_pred             -------CCCccEEEECCcHHH--HHHHHHHHcCCC--------cEEEEEEc
Confidence                   134999999865421  2223333 6654        66665543

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.96  E-value=1.3e-09  Score=96.22  Aligned_cols=98  Identities=11%  Similarity=0.127  Sum_probs=75.2

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      ..++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++..       +++++++|+.+...            
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~-------~v~~~~~d~~~~~~------------  100 (250)
T 2p7i_A           40 FFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD-------GITYIHSRFEDAQL------------  100 (250)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS-------CEEEEESCGGGCCC------------
T ss_pred             hcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC-------CeEEEEccHHHcCc------------
Confidence            44778999999999999999999888999999999999999876531       58899999887511            


Q ss_pred             cCCCCCCCCcccEEEEC-----ChhhhHHHHHHHh-c-cchhhcCCCCCCCEEEEEEccc
Q psy16898        240 SEGNSTGGTAVARVIMN-----LPATAVEYVRYLK-V-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~-~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                             ...||.|++.     .|. ...++..+. . |+++        |.+.+.+...
T Consensus       101 -------~~~fD~v~~~~~l~~~~~-~~~~l~~~~~~~Lkpg--------G~l~i~~~~~  144 (250)
T 2p7i_A          101 -------PRRYDNIVLTHVLEHIDD-PVALLKRINDDWLAEG--------GRLFLVCPNA  144 (250)
T ss_dssp             -------SSCEEEEEEESCGGGCSS-HHHHHHHHHHTTEEEE--------EEEEEEEECT
T ss_pred             -------CCcccEEEEhhHHHhhcC-HHHHHHHHHHHhcCCC--------CEEEEEcCCh
Confidence                   2459999984     222 245677776 6 7765        7777665443

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.96  E-value=6.1e-10  Score=98.82  Aligned_cols=101  Identities=15%  Similarity=0.054  Sum_probs=76.0

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.|++|+..++  +. ++++..+|+..-+..          
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~-~v~~~~~d~~~~~~~----------  155 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAG--VK-NVHVILGDGSKGFPP----------  155 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTT--CC-SEEEEESCGGGCCGG----------
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcC--CC-CcEEEECCcccCCCC----------
Confidence            5678899999999999999999976 799999999999999999999988  86 699999998321111          


Q ss_pred             ccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        239 QSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                              ...||.|+++.+...  +.+.+.. |+++        |.+.+.+-.
T Consensus       156 --------~~~fD~Ii~~~~~~~--~~~~~~~~L~pg--------G~lvi~~~~  191 (235)
T 1jg1_A          156 --------KAPYDVIIVTAGAPK--IPEPLIEQLKIG--------GKLIIPVGS  191 (235)
T ss_dssp             --------GCCEEEEEECSBBSS--CCHHHHHTEEEE--------EEEEEEECS
T ss_pred             --------CCCccEEEECCcHHH--HHHHHHHhcCCC--------cEEEEEEec
Confidence                    123999999865421  2223333 6654        777665543

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.96  E-value=2.4e-09  Score=95.00  Aligned_cols=99  Identities=17%  Similarity=0.237  Sum_probs=73.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +.++.+|||+|||+|.++..+++.|++|+|+|+|+.+++.++++           +.++++|+.+++....         
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~d~~~~~~~~~---------   98 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK-----------FNVVKSDAIEYLKSLP---------   98 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT-----------SEEECSCHHHHHHTSC---------
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh-----------cceeeccHHHHhhhcC---------
Confidence            56789999999999999999999999999999999999987643           5788899988753211         


Q ss_pred             cCCCCCCCCcccEEEEC-----Chh-hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        240 SEGNSTGGTAVARVIMN-----LPA-TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~n-----pP~-~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                             ...||.|+++     .|. ....++..+.. |+++        |.+.+......
T Consensus        99 -------~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~~~  144 (240)
T 3dli_A           99 -------DKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYS--------SYIVIESPNPT  144 (240)
T ss_dssp             -------TTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTT--------CCEEEEEECTT
T ss_pred             -------CCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCC--------cEEEEEeCCcc
Confidence                   2459999985     221 12456666655 6664        77776665543

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.95  E-value=2.2e-09  Score=93.37  Aligned_cols=101  Identities=17%  Similarity=0.160  Sum_probs=73.9

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .++.+|||+|||+|.++..+++.|++|+|+|+|+.+++.++++    .     ++.+..+|+.++.....          
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~-----~~~~~~~~~~~~~~~~~----------  111 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA----G-----AGEVHLASYAQLAEAKV----------  111 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT----C-----SSCEEECCHHHHHTTCS----------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh----c-----ccccchhhHHhhccccc----------
Confidence            3678999999999999999999999999999999999999876    3     35688899887532210          


Q ss_pred             CCCCCCCCcccEEEECChh---hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        241 EGNSTGGTAVARVIMNLPA---TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP~---~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                          .....||.|+++..-   ....++..+.. |+++        |.+.+..+.+
T Consensus       112 ----~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pg--------G~l~~~~~~~  155 (227)
T 3e8s_A          112 ----PVGKDYDLICANFALLHQDIIELLSAMRTLLVPG--------GALVIQTLHP  155 (227)
T ss_dssp             ----CCCCCEEEEEEESCCCSSCCHHHHHHHHHTEEEE--------EEEEEEECCT
T ss_pred             ----ccCCCccEEEECchhhhhhHHHHHHHHHHHhCCC--------eEEEEEecCc
Confidence                012359999987432   23456777766 7765        6666655433

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.95  E-value=1.5e-09  Score=97.59  Aligned_cols=89  Identities=19%  Similarity=0.154  Sum_probs=69.0

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .+.++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++.        +++++++|+.++..           
T Consensus        47 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~d~~~~~~-----------  107 (263)
T 3pfg_A           47 HSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP--------DAVLHHGDMRDFSL-----------  107 (263)
T ss_dssp             HCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT--------TSEEEECCTTTCCC-----------
T ss_pred             hCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC--------CCEEEECChHHCCc-----------
Confidence            34577899999999999999999999999999999999999987642        47899999876422           


Q ss_pred             ccCCCCCCCCcccEEEECC------h--hhhHHHHHHHhc-cchh
Q psy16898        239 QSEGNSTGGTAVARVIMNL------P--ATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~np------P--~~a~~~l~~~~~-l~~~  274 (324)
                              ...||.|+++.      |  .....++..+.. |+++
T Consensus       108 --------~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pg  144 (263)
T 3pfg_A          108 --------GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPD  144 (263)
T ss_dssp             --------SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEE
T ss_pred             --------cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCC
Confidence                    13599999974      1  123346666655 7765

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.94  E-value=3e-09  Score=95.98  Aligned_cols=109  Identities=15%  Similarity=0.135  Sum_probs=79.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-C--CEEEEEeCCHH------HHHHHHHHHHHhCCCCCCCeEEEecc-HHHHHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-G--AIVAANDLNPD------SYAWLQASIRLNERQVKTPISATQKD-ARDFLQTD  229 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g--~~V~avD~~~~------a~~~a~~N~~~n~~~l~~~v~~~~~D-~~~~~~~~  229 (324)
                      +.++.+|||+|||+|.++..+++. |  ++|+|+|+|+.      +++.|++++..++  +.++++++.+| ........
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~  118 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP--LGDRLTVHFNTNLSDDLGPI  118 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST--TGGGEEEECSCCTTTCCGGG
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC--CCCceEEEECChhhhccCCC
Confidence            468899999999999999999986 4  79999999997      9999999999888  76689999998 22110000


Q ss_pred             HHHhhhhhcccCCCCCCCCcccEEEECChhh----hHHHHHHHhccchhhcCCCCCCCEEEEEEcccC
Q psy16898        230 ARAHLVRWSQSEGNSTGGTAVARVIMNLPAT----AVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~----a~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                                      ....||.|+++.+-.    ...+++.++.+++       ++|.+.+..+...
T Consensus       119 ----------------~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~-------~gG~l~~~~~~~~  163 (275)
T 3bkx_A          119 ----------------ADQHFDRVVLAHSLWYFASANALALLFKNMAA-------VCDHVDVAEWSMQ  163 (275)
T ss_dssp             ----------------TTCCCSEEEEESCGGGSSCHHHHHHHHHHHTT-------TCSEEEEEEECSS
T ss_pred             ----------------CCCCEEEEEEccchhhCCCHHHHHHHHHHHhC-------CCCEEEEEEecCC
Confidence                            024599999864321    2235666655443       3588888776654

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.93  E-value=4.5e-10  Score=101.39  Aligned_cols=82  Identities=21%  Similarity=0.348  Sum_probs=64.7

Q ss_pred             HHHhh--ccCCCEEEEEcCCCchhHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHH
Q psy16898        155 RVTKE--VREGDLVLDVFAGVGPFSIPAARRG-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDAR  231 (324)
Q Consensus       155 ~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~  231 (324)
                      ++++.  +.++++|||+|||+|.++..++++| ++|+|+|+++.+++.+++|   ..   . +++++++|+.++..... 
T Consensus        22 ~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~---~~---~-~v~~i~~D~~~~~~~~~-   93 (249)
T 3ftd_A           22 KIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI---GD---E-RLEVINEDASKFPFCSL-   93 (249)
T ss_dssp             HHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS---CC---T-TEEEECSCTTTCCGGGS-
T ss_pred             HHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc---cC---C-CeEEEEcchhhCChhHc-
Confidence            45554  4578899999999999999999986 6999999999999999987   22   2 69999999987532210 


Q ss_pred             HhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        232 AHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                     .. ...|+.|||+.
T Consensus        94 ---------------~~-~~~vv~NlPy~  106 (249)
T 3ftd_A           94 ---------------GK-ELKVVGNLPYN  106 (249)
T ss_dssp             ---------------CS-SEEEEEECCTT
T ss_pred             ---------------cC-CcEEEEECchh
Confidence                           01 34899999995

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.93  E-value=9e-09  Score=97.54  Aligned_cols=84  Identities=30%  Similarity=0.471  Sum_probs=71.0

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhCCCCC-----CCeEEEeccHHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARRGA--IVAANDLNPDSYAWLQASIRLNERQVK-----TPISATQKDARDFLQTDAR  231 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~g~--~V~avD~~~~a~~~a~~N~~~n~~~l~-----~~v~~~~~D~~~~~~~~~~  231 (324)
                      ..++|++|||+|||.|+-++++|..+.  .|+|+|+++.-++.+++|++..+  ..     .++.+.+.|+..+....  
T Consensus       145 ~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~--~~~~~~~~~v~v~~~D~~~~~~~~--  220 (359)
T 4fzv_A          145 GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYV--PEEIRDGNQVRVTSWDGRKWGELE--  220 (359)
T ss_dssp             CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHS--CTTTTTSSSEEEECCCGGGHHHHS--
T ss_pred             CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhh--hhhhccCCceEEEeCchhhcchhc--
Confidence            367899999999999999999998654  89999999999999999999876  43     37899999998875431  


Q ss_pred             HhhhhhcccCCCCCCCCcccEEEECChhhh
Q psy16898        232 AHLVRWSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                                     +..||.|++|+|.++
T Consensus       221 ---------------~~~fD~VLlDaPCSg  235 (359)
T 4fzv_A          221 ---------------GDTYDRVLVDVPCTT  235 (359)
T ss_dssp             ---------------TTCEEEEEEECCCCC
T ss_pred             ---------------cccCCEEEECCccCC
Confidence                           245999999999764

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.93  E-value=1.5e-09  Score=108.49  Aligned_cols=97  Identities=16%  Similarity=0.132  Sum_probs=72.1

Q ss_pred             eeecCcChHHHHHHHhhc--cCCCEEEEEcCCCchhHHHHHhc--------------------CCEEEEEeCCHHHHHHH
Q psy16898        143 VYWNSRLSTEHERVTKEV--REGDLVLDVFAGVGPFSIPAARR--------------------GAIVAANDLNPDSYAWL  200 (324)
Q Consensus       143 ~f~~~r~~~e~~~~~~~~--~~g~~VLDl~~G~G~~al~~a~~--------------------g~~V~avD~~~~a~~~a  200 (324)
                      .|+.|+...+  .+++.+  .++.+|||++||+|.|.+.+++.                    ...++|+|+++.+++.|
T Consensus       150 ~fyTP~~iv~--~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA  227 (541)
T 2ar0_A          150 QYFTPRPLIK--TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA  227 (541)
T ss_dssp             CCCCCHHHHH--HHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred             eeeCCHHHHH--HHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHH
Confidence            3556662221  233433  46789999999999999998862                    13799999999999999


Q ss_pred             HHHHHHhCCCCCC----CeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        201 QASIRLNERQVKT----PISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       201 ~~N~~~n~~~l~~----~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      +.|+.+++  +..    ++.+.++|+.......                 ...||+|++|||+.
T Consensus       228 ~~nl~l~g--i~~~~~~~~~I~~gDtL~~~~~~-----------------~~~fD~Vv~NPPf~  272 (541)
T 2ar0_A          228 LMNCLLHD--IEGNLDHGGAIRLGNTLGSDGEN-----------------LPKAHIVATNPPFG  272 (541)
T ss_dssp             HHHHHTTT--CCCBGGGTBSEEESCTTSHHHHT-----------------SCCEEEEEECCCCT
T ss_pred             HHHHHHhC--CCccccccCCeEeCCCccccccc-----------------ccCCeEEEECCCcc
Confidence            99999988  762    2788999987543210                 13599999999985

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.92  E-value=3.8e-09  Score=88.39  Aligned_cols=97  Identities=8%  Similarity=0.074  Sum_probs=73.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +.++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++   ..     +++++++| ..+.             
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~-----~v~~~~~d-~~~~-------------   72 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK---FD-----SVITLSDP-KEIP-------------   72 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH---CT-----TSEEESSG-GGSC-------------
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh---CC-----CcEEEeCC-CCCC-------------
Confidence            56788999999999999999999877999999999999999987   22     58899999 1110             


Q ss_pred             cCCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        240 SEGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                             ...||.|+++..-    ....++..+.. |+++        |.+.+..+...
T Consensus        73 -------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg--------G~l~~~~~~~~  116 (170)
T 3i9f_A           73 -------DNSVDFILFANSFHDMDDKQHVISEVKRILKDD--------GRVIIIDWRKE  116 (170)
T ss_dssp             -------TTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEE--------EEEEEEEECSS
T ss_pred             -------CCceEEEEEccchhcccCHHHHHHHHHHhcCCC--------CEEEEEEcCcc
Confidence                   2359999986322    13456666666 7765        77777766554

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.92  E-value=2.3e-09  Score=94.67  Aligned_cols=89  Identities=21%  Similarity=0.166  Sum_probs=69.0

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      ++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.++++...      .+++++++|+.+....            
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~~~------------  104 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD------TGITYERADLDKLHLP------------  104 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS------SSEEEEECCGGGCCCC------------
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc------CCceEEEcChhhccCC------------
Confidence            788999999999999999999988 999999999999999876542      2589999998764211            


Q ss_pred             CCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchh
Q psy16898        241 EGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTRE  274 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~  274 (324)
                            ...||.|+++..-    ....++..+.. |+++
T Consensus       105 ------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg  137 (243)
T 3bkw_A          105 ------QDSFDLAYSSLALHYVEDVARLFRTVHQALSPG  137 (243)
T ss_dssp             ------TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred             ------CCCceEEEEeccccccchHHHHHHHHHHhcCcC
Confidence                  2359999986432    13456666655 7765

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.92  E-value=9.1e-10  Score=97.11  Aligned_cols=90  Identities=16%  Similarity=0.135  Sum_probs=67.7

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .+.++.+|||+|||+|.++..+++.+++|+|+|+|+.+++.+++|    .  -  +++++++|+.+.+...         
T Consensus        45 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~--~--~~~~~~~d~~~~~~~~---------  107 (226)
T 3m33_A           45 LLTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN----A--P--HADVYEWNGKGELPAG---------  107 (226)
T ss_dssp             HCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH----C--T--TSEEEECCSCSSCCTT---------
T ss_pred             cCCCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh----C--C--CceEEEcchhhccCCc---------
Confidence            357889999999999999999999999999999999999999987    2  1  5899999985322110         


Q ss_pred             ccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~  274 (324)
                             ....||.|++++.  ...++..+.. |+++
T Consensus       108 -------~~~~fD~v~~~~~--~~~~l~~~~~~Lkpg  135 (226)
T 3m33_A          108 -------LGAPFGLIVSRRG--PTSVILRLPELAAPD  135 (226)
T ss_dssp             -------CCCCEEEEEEESC--CSGGGGGHHHHEEEE
T ss_pred             -------CCCCEEEEEeCCC--HHHHHHHHHHHcCCC
Confidence                   0135999999842  1234444444 6665

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.90  E-value=1.6e-09  Score=95.59  Aligned_cols=104  Identities=13%  Similarity=0.095  Sum_probs=76.8

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhc-C-------CEEEEEeCCHHHHHHHHHHHHHhCCCC----CCCeEEEeccHHHHH
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARR-G-------AIVAANDLNPDSYAWLQASIRLNERQV----KTPISATQKDARDFL  226 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~-g-------~~V~avD~~~~a~~~a~~N~~~n~~~l----~~~v~~~~~D~~~~~  226 (324)
                      .+.++.+|||+|||+|.++..+++. +       .+|+++|+++.+++.|++|+..++  .    ..+++++++|+.+..
T Consensus        81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~v~~~~~d~~~~~  158 (227)
T 1r18_A           81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDD--RSMLDSGQLLIVEGDGRKGY  158 (227)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHH--HHHHHHTSEEEEESCGGGCC
T ss_pred             hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcC--ccccCCCceEEEECCcccCC
Confidence            3568899999999999999999983 3       499999999999999999998653  2    237999999987622


Q ss_pred             HHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        227 QTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                      ..                  ...||.|+++.+..  .+.+.+.. |+++        |.+.+.+...
T Consensus       159 ~~------------------~~~fD~I~~~~~~~--~~~~~~~~~Lkpg--------G~lvi~~~~~  197 (227)
T 1r18_A          159 PP------------------NAPYNAIHVGAAAP--DTPTELINQLASG--------GRLIVPVGPD  197 (227)
T ss_dssp             GG------------------GCSEEEEEECSCBS--SCCHHHHHTEEEE--------EEEEEEESCS
T ss_pred             Cc------------------CCCccEEEECCchH--HHHHHHHHHhcCC--------CEEEEEEecC
Confidence            11                  13499999987652  12344433 6654        7777666543

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.89  E-value=1.2e-09  Score=98.81  Aligned_cols=81  Identities=21%  Similarity=0.233  Sum_probs=61.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCE--EEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAI--VAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~--V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.++++|||+|||+|.++. +++ +.+  |+|+|+++.+++.+++|+..+.     +++++++|+.++......+    +
T Consensus        19 ~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~~-----~v~~i~~D~~~~~~~~~~~----~   87 (252)
T 1qyr_A           19 PQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLGP-----KLTIYQQDAMTFNFGELAE----K   87 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTGG-----GEEEECSCGGGCCHHHHHH----H
T ss_pred             CCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccCC-----ceEEEECchhhCCHHHhhc----c
Confidence            4578899999999999999 654 567  9999999999999998775322     7999999998752221110    0


Q ss_pred             cccCCCCCCCCcccEEEECChhh
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                               ....+.||.|||+.
T Consensus        88 ---------~~~~~~vvsNlPY~  101 (252)
T 1qyr_A           88 ---------MGQPLRVFGNLPYN  101 (252)
T ss_dssp             ---------HTSCEEEEEECCTT
T ss_pred             ---------cCCceEEEECCCCC
Confidence                     01268999999985

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.88  E-value=3.6e-09  Score=108.83  Aligned_cols=110  Identities=14%  Similarity=0.165  Sum_probs=79.4

Q ss_pred             eecCcChHHHHH-HHhhc--cCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHh------CCCC
Q psy16898        144 YWNSRLSTEHER-VTKEV--REGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLN------ERQV  211 (324)
Q Consensus       144 f~~~r~~~e~~~-~~~~~--~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n------~~~l  211 (324)
                      ++++.+..++.. +++.+  .++.+|||+|||+|.+++.+++.+   ++|+|+|+|+.|++.|++++...      +  +
T Consensus       700 tFsPPL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~g--l  777 (950)
T 3htx_A          700 FFKPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACN--V  777 (950)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSS--C
T ss_pred             cCCchHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcC--C
Confidence            456665444443 33433  378899999999999999999987   79999999999999999977643      4  4


Q ss_pred             CCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEEC-----Chh-hhHHHHHHHhc-cchh
Q psy16898        212 KTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMN-----LPA-TAVEYVRYLKV-LTRE  274 (324)
Q Consensus       212 ~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~n-----pP~-~a~~~l~~~~~-l~~~  274 (324)
                      . +++++++|+.++...                  ...||.|++.     .|. ....++..+.. |+++
T Consensus       778 ~-nVefiqGDa~dLp~~------------------d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG  828 (950)
T 3htx_A          778 K-SATLYDGSILEFDSR------------------LHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK  828 (950)
T ss_dssp             S-EEEEEESCTTSCCTT------------------SCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             C-ceEEEECchHhCCcc------------------cCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence            4 799999999874321                  2459999985     222 23346666555 6653

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.88  E-value=2.5e-09  Score=95.13  Aligned_cols=98  Identities=9%  Similarity=0.002  Sum_probs=73.4

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.|++++..+.     +++++++|+.++...           
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~d~~~~~~~-----------  155 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP-----VGKFILASMETATLP-----------  155 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSS-----EEEEEESCGGGCCCC-----------
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCC-----ceEEEEccHHHCCCC-----------
Confidence            3678999999999999999998754 89999999999999998876432     689999998764211           


Q ss_pred             cCCCCCCCCcccEEEECCh------hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        240 SEGNSTGGTAVARVIMNLP------ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP------~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                             ...||.|++...      .....++..+.. |+++        |.+.+..
T Consensus       156 -------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~  197 (254)
T 1xtp_A          156 -------PNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPN--------GYIFFKE  197 (254)
T ss_dssp             -------SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEE
T ss_pred             -------CCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCC--------eEEEEEe
Confidence                   235999998632      223456666655 7765        6665544

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.88  E-value=6.5e-11  Score=106.22  Aligned_cols=83  Identities=17%  Similarity=0.315  Sum_probs=66.3

Q ss_pred             HHHhh--ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898        155 RVTKE--VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA  232 (324)
Q Consensus       155 ~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~  232 (324)
                      .+++.  +.++.+|||+|||+|.++..+++++++|+|+|+++.+++.|++|+.  .  . ++++++++|+.++....   
T Consensus        20 ~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~--~-~~v~~~~~D~~~~~~~~---   91 (245)
T 1yub_A           20 QIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--L--N-TRVTLIHQDILQFQFPN---   91 (245)
T ss_dssp             HHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--T--C-SEEEECCSCCTTTTCCC---
T ss_pred             HHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc--c--C-CceEEEECChhhcCccc---
Confidence            34444  4578899999999999999999998999999999999999988876  2  2 37999999998643110   


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                    ...| .|++|||+.
T Consensus        92 --------------~~~f-~vv~n~Py~  104 (245)
T 1yub_A           92 --------------KQRY-KIVGNIPYH  104 (245)
T ss_dssp             --------------SSEE-EEEEECCSS
T ss_pred             --------------CCCc-EEEEeCCcc
Confidence                          1348 899999985

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.87  E-value=5.1e-09  Score=95.08  Aligned_cols=99  Identities=17%  Similarity=0.143  Sum_probs=74.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +.++.+|||+|||+|.++..+++.+++|+|+|+|+.+++.++++.   .     ++.++.+|+.++..            
T Consensus        55 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~---~-----~~~~~~~d~~~~~~------------  114 (279)
T 3ccf_A           55 PQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY---P-----HLHFDVADARNFRV------------  114 (279)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---T-----TSCEEECCTTTCCC------------
T ss_pred             CCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC---C-----CCEEEECChhhCCc------------
Confidence            457889999999999999999998889999999999999998764   2     47788999876321            


Q ss_pred             cCCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        240 SEGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                             ...||.|+++..-    ....++..+.. |+++        |++.+......
T Consensus       115 -------~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg--------G~l~~~~~~~~  158 (279)
T 3ccf_A          115 -------DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSG--------GRFVAEFGGKG  158 (279)
T ss_dssp             -------SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE--------EEEEEEEECTT
T ss_pred             -------CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCC--------cEEEEEecCCc
Confidence                   1359999986432    12356666655 7775        77776665543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.87  E-value=4.5e-09  Score=87.39  Aligned_cols=112  Identities=20%  Similarity=0.145  Sum_probs=76.2

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHH-HHHhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTD-ARAHLV  235 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~-~~~~~~  235 (324)
                      +.++.+|||+|||+|.++..+++.   +.+|+++|+++ +++            +. +++++++|+.+..... ....+.
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~------------~~-~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP------------IV-GVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC------------CT-TEEEEESCTTSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc------------cC-cEEEEEcccccchhhhhhhccCC
Confidence            568889999999999999999986   36999999999 642            22 6889999997753110 000000


Q ss_pred             hhcccCCCCCCCCcccEEEECChhhh---------------HHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHH
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLPATA---------------VEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETK  299 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP~~a---------------~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~  299 (324)
                                 ...||.|++|+|...               ..++..+.. ++++        |.+.+..+.........
T Consensus        86 -----------~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g--------G~l~~~~~~~~~~~~~~  146 (180)
T 1ej0_A           86 -----------DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG--------GSFVVKVFQGEGFDEYL  146 (180)
T ss_dssp             -----------TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE--------EEEEEEEESSTTHHHHH
T ss_pred             -----------CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCC--------cEEEEEEecCCcHHHHH
Confidence                       235999999987421               345555544 5654        88888877766555555


Q ss_pred             hHhhh
Q psy16898        300 KKIKS  304 (324)
Q Consensus       300 ~~v~~  304 (324)
                      +..+.
T Consensus       147 ~~~~~  151 (180)
T 1ej0_A          147 REIRS  151 (180)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.85  E-value=8e-09  Score=98.61  Aligned_cols=113  Identities=15%  Similarity=0.152  Sum_probs=79.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHh-----CCCCCCCeEEEeccHHHHHHHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLN-----ERQVKTPISATQKDARDFLQTDAR  231 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n-----~~~l~~~v~~~~~D~~~~~~~~~~  231 (324)
                      +.++.+|||+|||+|.+++.+++.   +.+|+|+|+|+.+++.|++|++.+     +.....+++++.+|+.++..... 
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~-  159 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP-  159 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBS-
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhccc-
Confidence            457889999999999999999884   569999999999999999998865     20011379999999886421000 


Q ss_pred             HhhhhhcccCCCCCCCCcccEEEECChhh----hHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        232 AHLVRWSQSEGNSTGGTAVARVIMNLPAT----AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~fD~Vi~npP~~----a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                 ..-....||.|+++..-.    ...++..+.. |+++        |++.+..+..
T Consensus       160 -----------~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg--------G~l~i~~~~~  206 (383)
T 4fsd_A          160 -----------EGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDG--------GELYFSDVYA  206 (383)
T ss_dssp             -----------CCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE--------EEEEEEEEEE
T ss_pred             -----------CCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCC--------CEEEEEEecc
Confidence                       000124599999975321    2456666655 7775        7777665443

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.85  E-value=1.4e-09  Score=104.49  Aligned_cols=84  Identities=14%  Similarity=0.101  Sum_probs=62.9

Q ss_pred             eecCcChHHHHHHHhhcc--CCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy16898        144 YWNSRLSTEHERVTKEVR--EGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISAT  218 (324)
Q Consensus       144 f~~~r~~~e~~~~~~~~~--~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~  218 (324)
                      |+.++...+  .+++.+.  ++.+|||+|||+|.+++.++++   +.+|+|+|+++.+++.|       .     +++++
T Consensus        21 ~~TP~~l~~--~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-------~-----~~~~~   86 (421)
T 2ih2_A           21 VETPPEVVD--FMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------P-----WAEGI   86 (421)
T ss_dssp             CCCCHHHHH--HHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------T-----TEEEE
T ss_pred             EeCCHHHHH--HHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-------C-----CCcEE
Confidence            455552222  3444443  5679999999999999999983   46999999999998776       2     58899


Q ss_pred             eccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        219 QKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       219 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      ++|+.++..                   ...||+|++|||+.
T Consensus        87 ~~D~~~~~~-------------------~~~fD~Ii~NPPy~  109 (421)
T 2ih2_A           87 LADFLLWEP-------------------GEAFDLILGNPPYG  109 (421)
T ss_dssp             ESCGGGCCC-------------------SSCEEEEEECCCCC
T ss_pred             eCChhhcCc-------------------cCCCCEEEECcCcc
Confidence            999876421                   13599999999984

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.84  E-value=2.9e-09  Score=106.20  Aligned_cols=80  Identities=23%  Similarity=0.272  Sum_probs=66.7

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc-----CCEEEEEeCCHHHHHHHHHHHHHhCCCCC-CCeEEEeccHHHH--HHHHHHHh
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR-----GAIVAANDLNPDSYAWLQASIRLNERQVK-TPISATQKDARDF--LQTDARAH  233 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~-----g~~V~avD~~~~a~~~a~~N~~~n~~~l~-~~v~~~~~D~~~~--~~~~~~~~  233 (324)
                      ++.+|+|++||+|+|.+.+++.     ...++|+|+++.++..|+.|+..++  +. +++.+.++|....  ..      
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g--i~~~~~~I~~gDtL~~d~p~------  292 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHG--VPIENQFLHNADTLDEDWPT------  292 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTT--CCGGGEEEEESCTTTSCSCC------
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcC--CCcCccceEecceecccccc------
Confidence            6789999999999999999874     4599999999999999999999999  74 3688999997642  11      


Q ss_pred             hhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        234 LVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       234 ~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                 .....||+||+|||+.
T Consensus       293 -----------~~~~~fD~IvaNPPf~  308 (542)
T 3lkd_A          293 -----------QEPTNFDGVLMNPPYS  308 (542)
T ss_dssp             -----------SSCCCBSEEEECCCTT
T ss_pred             -----------cccccccEEEecCCcC
Confidence                       0124699999999985

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.84  E-value=1.6e-09  Score=94.59  Aligned_cols=63  Identities=22%  Similarity=0.216  Sum_probs=52.2

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHH----HhCCCCCCCeEEEeccHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIR----LNERQVKTPISATQKDARDF  225 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~----~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +.++.+|||+|||+|.++..+++.  +++|+|+|+|+.|++.+.++++    .++  ++ +++++++|+.++
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~--~~-~v~~~~~d~~~l   93 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGG--LP-NLLYLWATAERL   93 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTC--CT-TEEEEECCSTTC
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcC--CC-ceEEEecchhhC
Confidence            567889999999999999999997  6799999999998886544443    345  55 799999999873

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.84  E-value=6.3e-09  Score=91.58  Aligned_cols=88  Identities=22%  Similarity=0.194  Sum_probs=67.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      ..++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++.   .     +++++++|+.++..            
T Consensus        38 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~---~-----~~~~~~~d~~~~~~------------   97 (239)
T 3bxo_A           38 TPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL---P-----DATLHQGDMRDFRL------------   97 (239)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC---T-----TCEEEECCTTTCCC------------
T ss_pred             cCCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC---C-----CCEEEECCHHHccc------------
Confidence            467889999999999999999998889999999999999998753   2     47899999876321            


Q ss_pred             cCCCCCCCCcccEEEE-C-----Ch--hhhHHHHHHHhc-cchh
Q psy16898        240 SEGNSTGGTAVARVIM-N-----LP--ATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~-n-----pP--~~a~~~l~~~~~-l~~~  274 (324)
                             ...||.|++ .     .|  .....++..+.. |+++
T Consensus        98 -------~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg  134 (239)
T 3bxo_A           98 -------GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPG  134 (239)
T ss_dssp             -------SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEE
T ss_pred             -------CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCC
Confidence                   135999994 2     21  223456666665 7765

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.82  E-value=1.7e-08  Score=86.21  Aligned_cols=111  Identities=16%  Similarity=0.144  Sum_probs=71.9

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhc-C----------CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEE-eccHHHHH
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARR-G----------AIVAANDLNPDSYAWLQASIRLNERQVKTPISAT-QKDARDFL  226 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~-g----------~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~-~~D~~~~~  226 (324)
                      .+.++.+|||+|||+|.+++.+++. +          .+|+|+|+++.           ..  +. +++++ .+|+.+..
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~-----------~~--~~-~~~~~~~~d~~~~~   84 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI-----------FP--LE-GATFLCPADVTDPR   84 (196)
T ss_dssp             CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC-----------CC--CT-TCEEECSCCTTSHH
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc-----------cc--CC-CCeEEEeccCCCHH
Confidence            3578999999999999999999985 4          79999999983           12  33 68899 99976542


Q ss_pred             HHH-HHHhhhhhcccCCCCCCCCcccEEEECChhhh---------------HHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        227 QTD-ARAHLVRWSQSEGNSTGGTAVARVIMNLPATA---------------VEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       227 ~~~-~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a---------------~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                      ... ....+.           ...||+|++|++...               ..++..+.. |+++        |.+.+..
T Consensus        85 ~~~~~~~~~~-----------~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~lv~~~  145 (196)
T 2nyu_A           85 TSQRILEVLP-----------GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPG--------GTFLCKT  145 (196)
T ss_dssp             HHHHHHHHSG-----------GGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE--------EEEEEEE
T ss_pred             HHHHHHHhcC-----------CCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCC--------CEEEEEe
Confidence            211 110000           135999999863210               133444433 5654        8888887


Q ss_pred             cccCCChhHHhHh
Q psy16898        290 FLPKMDLETKKKI  302 (324)
Q Consensus       290 f~~~~~~~~~~~v  302 (324)
                      +......+..+.+
T Consensus       146 ~~~~~~~~~~~~l  158 (196)
T 2nyu_A          146 WAGSQSRRLQRRL  158 (196)
T ss_dssp             CCSGGGHHHHHHH
T ss_pred             cCCccHHHHHHHH
Confidence            7665444444443

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.82  E-value=1.8e-08  Score=93.02  Aligned_cols=111  Identities=13%  Similarity=-0.029  Sum_probs=76.1

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCC-----CCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNER-----QVKTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~-----~l~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++...++.     ... +++++++|+.+......   +
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~---~  108 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIF-SAEFITADSSKELLIDK---F  108 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCC-EEEEEECCTTTSCSTTT---C
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccc-eEEEEEecccccchhhh---c
Confidence            47789999999999999999975 45999999999999999999876520     022 68999999886421000   0


Q ss_pred             hhhcccCCCCCCCCcccEEEECChh--------hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNLPA--------TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~npP~--------~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                          .     .....||.|+++..-        ....++..+.. |+++        |.+.+.++..
T Consensus       109 ----~-----~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg--------G~li~~~~~~  158 (313)
T 3bgv_A          109 ----R-----DPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPG--------GYFIGTTPNS  158 (313)
T ss_dssp             ----S-----STTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEE--------EEEEEEEECH
T ss_pred             ----c-----cCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCC--------cEEEEecCCh
Confidence                0     001359999986422        12356666655 6665        7777666544

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.81  E-value=1.6e-08  Score=93.65  Aligned_cols=107  Identities=12%  Similarity=-0.042  Sum_probs=69.4

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCC-----CeEEEeccHHHHH-HHHHHHhh
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKT-----PISATQKDARDFL-QTDARAHL  234 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~-----~v~~~~~D~~~~~-~~~~~~~~  234 (324)
                      ++.+|||+|||+|.....+++. +++|+|+|+|+.|++.|++.+...+  ...     ++++.++|+..-. ........
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~--~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLN--SGIKTKYYKFDYIQETIRSDTFVSSVREVF  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHC--C----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhcc--ccccccccccchhhhhcccchhhhhhhccc
Confidence            4789999999999877766665 4699999999999999999887665  321     2567777762100 00000000


Q ss_pred             hhhcccCCCCCCCCcccEEEEC--------ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMN--------LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~n--------pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                                 ....||+|++.        ++. ...++..+.. |+++        |++.+.+.
T Consensus       126 -----------~~~~FD~V~~~~~lhy~~~~~~-~~~~l~~~~r~LkpG--------G~~i~~~~  170 (302)
T 2vdw_A          126 -----------YFGKFNIIDWQFAIHYSFHPRH-YATVMNNLSELTASG--------GKVLITTM  170 (302)
T ss_dssp             -----------CSSCEEEEEEESCGGGTCSTTT-HHHHHHHHHHHEEEE--------EEEEEEEE
T ss_pred             -----------cCCCeeEEEECchHHHhCCHHH-HHHHHHHHHHHcCCC--------CEEEEEeC
Confidence                       02469999863        222 2456777766 7876        77655443

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.81  E-value=1.1e-08  Score=92.07  Aligned_cols=99  Identities=16%  Similarity=0.071  Sum_probs=72.6

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .+.++.+|||+|||+|.++..+++.|++|+|+|+|+.+++.++++..  +     +  ++++|+.++...          
T Consensus        51 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~--~-----~--~~~~d~~~~~~~----------  111 (260)
T 2avn_A           51 YLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV--K-----N--VVEAKAEDLPFP----------  111 (260)
T ss_dssp             HCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC--S-----C--EEECCTTSCCSC----------
T ss_pred             hcCCCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC--C-----C--EEECcHHHCCCC----------
Confidence            34578899999999999999999999999999999999999987643  2     2  677887653211          


Q ss_pred             ccCCCCCCCCcccEEEECChh-----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        239 QSEGNSTGGTAVARVIMNLPA-----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~-----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                              ...||.|++..+-     ....++..+.. |+++        |.+.+..+..
T Consensus       112 --------~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~~~~~~~  155 (260)
T 2avn_A          112 --------SGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPD--------GLLIATVDNF  155 (260)
T ss_dssp             --------TTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEE--------EEEEEEEEBH
T ss_pred             --------CCCEEEEEEcchhhhccccHHHHHHHHHHHcCCC--------eEEEEEeCCh
Confidence                    2359999986321     13456666666 7765        7777665543

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.80  E-value=4.6e-09  Score=94.57  Aligned_cols=101  Identities=17%  Similarity=0.167  Sum_probs=73.0

Q ss_pred             HHhhc--cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHh
Q psy16898        156 VTKEV--REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAH  233 (324)
Q Consensus       156 ~~~~~--~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~  233 (324)
                      +++.+  .++.+|||+|||+|.++..+++.+++|+|+|+|+.+++.++++.         +++++.+|+.++...     
T Consensus        26 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~---------~~~~~~~d~~~~~~~-----   91 (261)
T 3ege_A           26 IINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP---------QVEWFTGYAENLALP-----   91 (261)
T ss_dssp             HHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT---------TEEEECCCTTSCCSC-----
T ss_pred             HHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc---------CCEEEECchhhCCCC-----
Confidence            44444  67899999999999999999999999999999999988765322         589999998763211     


Q ss_pred             hhhhcccCCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        234 LVRWSQSEGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       234 ~~~~~~~~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                   ...||.|++...-    ....++..+.. |+ +        |++.+..+..
T Consensus        92 -------------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-g--------G~~~~~~~~~  133 (261)
T 3ege_A           92 -------------DKSVDGVISILAIHHFSHLEKSFQEMQRIIR-D--------GTIVLLTFDI  133 (261)
T ss_dssp             -------------TTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-S--------SCEEEEEECG
T ss_pred             -------------CCCEeEEEEcchHhhccCHHHHHHHHHHHhC-C--------cEEEEEEcCC
Confidence                         2459999986432    12345555544 55 5        7666666553

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.80  E-value=1.2e-08  Score=90.91  Aligned_cols=103  Identities=12%  Similarity=-0.013  Sum_probs=76.3

Q ss_pred             HHHhh--ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHH
Q psy16898        155 RVTKE--VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDA  230 (324)
Q Consensus       155 ~~~~~--~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~  230 (324)
                      .+++.  ..++.+|||+|||+|.++..+++.  +++|+++|+|+.+++.++++    .    .+++++.+|+.++. .  
T Consensus        24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~----~----~~~~~~~~d~~~~~-~--   92 (259)
T 2p35_A           24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR----L----PNTNFGKADLATWK-P--   92 (259)
T ss_dssp             HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH----S----TTSEEEECCTTTCC-C--
T ss_pred             HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----C----CCcEEEECChhhcC-c--
Confidence            34444  346789999999999999999986  78999999999999999887    2    15889999987643 1  


Q ss_pred             HHhhhhhcccCCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        231 RAHLVRWSQSEGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                      ...||.|+++..-    ....++..+.. |+++        |.+.+.+...
T Consensus        93 ----------------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg--------G~l~~~~~~~  135 (259)
T 2p35_A           93 ----------------AQKADLLYANAVFQWVPDHLAVLSQLMDQLESG--------GVLAVQMPDN  135 (259)
T ss_dssp             ----------------SSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEE--------EEEEEEEECC
T ss_pred             ----------------cCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCC--------eEEEEEeCCC
Confidence                            2459999997532    12446666655 6765        7777666543

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.79  E-value=2.4e-09  Score=106.91  Aligned_cols=79  Identities=16%  Similarity=0.155  Sum_probs=62.4

Q ss_pred             CEEEEEcCCCchhHHHHHhc-----------------CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHH
Q psy16898        164 DLVLDVFAGVGPFSIPAARR-----------------GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFL  226 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~~-----------------g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~  226 (324)
                      .+|||++||+|+|.+.+++.                 ...++|+|+++.+++.|+.|+.+++  +..++.+.++|.....
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g--i~~~i~i~~gDtL~~~  323 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG--IDFNFGKKNADSFLDD  323 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT--CCCBCCSSSCCTTTSC
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC--CCcccceeccchhcCc
Confidence            39999999999999988642                 3589999999999999999999999  8655555788865421


Q ss_pred             HHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh
Q psy16898        227 QTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                      .                 .....||+||+|||+..
T Consensus       324 ~-----------------~~~~~fD~Iv~NPPf~~  341 (544)
T 3khk_A          324 Q-----------------HPDLRADFVMTNPPFNM  341 (544)
T ss_dssp             S-----------------CTTCCEEEEEECCCSSC
T ss_pred             c-----------------cccccccEEEECCCcCC
Confidence            0                 01246999999999963

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.79  E-value=1.3e-08  Score=87.36  Aligned_cols=52  Identities=12%  Similarity=0.109  Sum_probs=42.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc----CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR----GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~----g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +.++.+|||+|||+|.+++.++++    +++|+|+|+++.+           .  .+ +++++++|+.+.
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~--~~-~v~~~~~d~~~~   75 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------P--IP-NVYFIQGEIGKD   75 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------C--CT-TCEEEECCTTTT
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------C--CC-CceEEEccccch
Confidence            568889999999999999999985    4699999999931           2  33 688999998764

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.79  E-value=3.3e-09  Score=96.43  Aligned_cols=100  Identities=9%  Similarity=-0.068  Sum_probs=77.7

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH--hCCCC-CCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRL--NERQV-KTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~--n~~~l-~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      ..+.+|||+|||+|.++..+++.+.+|+++|+++.+++.|++++..  ++  + ..+++++.+|+.+++ .         
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~--~~~~rv~~~~~D~~~~~-~---------  138 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEV--KNNKNFTHAKQLLDLDI-K---------  138 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHH--HTCTTEEEESSGGGSCC-C---------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccc--cCCCeEEEEechHHHHH-h---------
Confidence            3568999999999999999988767999999999999999987643  22  2 237999999998764 1         


Q ss_pred             cccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                 .||+|++|.+. ...|++.+.. |+++        |++.+..-+.
T Consensus       139 -----------~fD~Ii~d~~d-p~~~~~~~~~~L~pg--------G~lv~~~~~~  174 (262)
T 2cmg_A          139 -----------KYDLIFCLQEP-DIHRIDGLKRMLKED--------GVFISVAKHP  174 (262)
T ss_dssp             -----------CEEEEEESSCC-CHHHHHHHHTTEEEE--------EEEEEEEECT
T ss_pred             -----------hCCEEEECCCC-hHHHHHHHHHhcCCC--------cEEEEEcCCc
Confidence                       29999999865 3457777766 7775        7777654443

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.78  E-value=1.5e-08  Score=87.66  Aligned_cols=98  Identities=11%  Similarity=-0.005  Sum_probs=72.1

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      ...++.+|||+|||+|.++..+   +. +|+|+|+|+.+++.+++++   .     ++.++++|+.++...         
T Consensus        33 ~~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~---~-----~~~~~~~d~~~~~~~---------   92 (211)
T 2gs9_A           33 LLPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA---P-----EATWVRAWGEALPFP---------   92 (211)
T ss_dssp             TCCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC---T-----TSEEECCCTTSCCSC---------
T ss_pred             hcCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC---C-----CcEEEEcccccCCCC---------
Confidence            3457889999999999999887   67 9999999999999998876   2     478899998753211         


Q ss_pred             cccCCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                               ...||.|+++-.-    ....++..+.. |+++        |.+.+..+...
T Consensus        93 ---------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg--------G~l~i~~~~~~  136 (211)
T 2gs9_A           93 ---------GESFDVVLLFTTLEFVEDVERVLLEARRVLRPG--------GALVVGVLEAL  136 (211)
T ss_dssp             ---------SSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEE--------EEEEEEEECTT
T ss_pred             ---------CCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCC--------CEEEEEecCCc
Confidence                     2459999986321    13456666665 7765        77776665443

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.76  E-value=2.1e-08  Score=94.76  Aligned_cols=100  Identities=16%  Similarity=0.047  Sum_probs=78.6

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.++.+|||+|||+|.++..+++.  +.+++++|+ +.+++.|++|+..++  +.++++++.+|+.+.+           
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~-----------  245 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG--LADRVTVAEGDFFKPL-----------  245 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTTSCC-----------
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcC--CCCceEEEeCCCCCcC-----------
Confidence            357789999999999999999985  569999999 999999999999988  8778999999987511           


Q ss_pred             cccCCCCCCCCcccEEEEC-----Chhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        238 SQSEGNSTGGTAVARVIMN-----LPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~n-----pP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                               +..||+|+++     .|.. ...++..+.. |+++        |.+.+..+
T Consensus       246 ---------~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pg--------G~l~i~e~  288 (374)
T 1qzz_A          246 ---------PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPG--------GRLLVLDR  288 (374)
T ss_dssp             ---------SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEC
T ss_pred             ---------CCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCC--------cEEEEEec
Confidence                     1239999885     2332 2457777766 7765        77776665

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.75  E-value=1.6e-09  Score=98.83  Aligned_cols=86  Identities=16%  Similarity=0.210  Sum_probs=70.0

Q ss_pred             HHhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        156 VTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       156 ~~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      ++..+ .+..+||+|+|+|.+++.+.+++.+++.+|.++.+++.+++|++..     ++++++++|+...+.....    
T Consensus        86 ~l~~~-n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~-----~~~~V~~~D~~~~L~~l~~----  155 (283)
T 2oo3_A           86 VIKQI-NLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFN-----KKVYVNHTDGVSKLNALLP----  155 (283)
T ss_dssp             HHHHH-SSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTT-----SCEEEECSCHHHHHHHHCS----
T ss_pred             HHHHh-cCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcC-----CcEEEEeCcHHHHHHHhcC----
Confidence            34444 3556899999999999999997779999999999999999998642     3799999999988775421    


Q ss_pred             hhcccCCCCCCCCcccEEEECChhhh
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                                ++.+||.|++|||+..
T Consensus       156 ----------~~~~fdLVfiDPPYe~  171 (283)
T 2oo3_A          156 ----------PPEKRGLIFIDPSYER  171 (283)
T ss_dssp             ----------CTTSCEEEEECCCCCS
T ss_pred             ----------CCCCccEEEECCCCCC
Confidence                      1245999999999963

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.74  E-value=1.4e-09  Score=99.72  Aligned_cols=103  Identities=15%  Similarity=0.089  Sum_probs=70.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH-hCCCCCCCeEEE--eccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRL-NERQVKTPISAT--QKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~-n~~~l~~~v~~~--~~D~~~~~~~~~~~~~~~  236 (324)
                      +.+|.+|||+|||+|.++..++++ .+|+|+|+++ ++..++++... +.  ...++.++  ++|+.++.          
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~--~~~~v~~~~~~~D~~~l~----------  145 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVET--FGWNLITFKSKVDVTKME----------  145 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCC--TTGGGEEEECSCCGGGCC----------
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhh--cCCCeEEEeccCcHhhCC----------
Confidence            567899999999999999999998 7899999999 43333221100 11  11268899  99988732          


Q ss_pred             hcccCCCCCCCCcccEEEECChhh----------hHHHHHHHhc-cchhhcCCCCCCC--EEEEEEcccCC
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT----------AVEYVRYLKV-LTREEFGKLSRPP--VLYLYCFLPKM  294 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~----------a~~~l~~~~~-l~~~~~~~~~~~g--~vh~y~f~~~~  294 (324)
                                ...||.|++|....          ....++.+.. |+++        |  .+.+-.|.+..
T Consensus       146 ----------~~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpG--------G~~~~v~~~~~~~~  198 (276)
T 2wa2_A          146 ----------PFQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYN--------QGCGFCVKVLNPYS  198 (276)
T ss_dssp             ----------CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHS--------TTCEEEEEESCCCS
T ss_pred             ----------CCCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccC--------CCcEEEEEeCCCCc
Confidence                      13599999996511          1124555544 6665        8  88888888443

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.73  E-value=9.5e-09  Score=91.83  Aligned_cols=47  Identities=17%  Similarity=0.241  Sum_probs=42.7

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLN  207 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n  207 (324)
                      .++.+|||+|||+|.+++.+++.+. +|+|+|+|+.+++.+++++..+
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~  102 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKE  102 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcC
Confidence            4678999999999999999999887 9999999999999999988644

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.72  E-value=3.6e-08  Score=91.64  Aligned_cols=103  Identities=23%  Similarity=0.283  Sum_probs=79.6

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .++.+|||+|||+|.++..+++.  +.+++++|++ .+++.|++++..++  +.++++++.+|+.+...           
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~-----------  229 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQG--VASRYHTIAGSAFEVDY-----------  229 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHT--CGGGEEEEESCTTTSCC-----------
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcC--CCcceEEEecccccCCC-----------
Confidence            66789999999999999999985  6799999999 99999999999988  87689999999875310           


Q ss_pred             ccCCCCCCCCcccEEEE-CChh-----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        239 QSEGNSTGGTAVARVIM-NLPA-----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~-npP~-----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                              ...||+|++ +...     ....++..+.. ++++        |.+.+..+...
T Consensus       230 --------~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg--------G~l~i~e~~~~  275 (335)
T 2r3s_A          230 --------GNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVE--------GKVIVFDFIPN  275 (335)
T ss_dssp             --------CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEECCCC
T ss_pred             --------CCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCC--------cEEEEEeecCC
Confidence                    123999998 3222     22456666666 7765        77776665543

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.71  E-value=4.5e-08  Score=92.31  Aligned_cols=102  Identities=11%  Similarity=0.058  Sum_probs=77.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.++.+|||+|||+|.++..++++  +.+++++|+ +.+++.+++++..++  +.++++++.+|+.+...          
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~----------  254 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG--VADRMRGIAVDIYKESY----------  254 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT--CTTTEEEEECCTTTSCC----------
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcC--CCCCEEEEeCccccCCC----------
Confidence            357789999999999999999985  569999999 999999999999988  87679999999876311          


Q ss_pred             cccCCCCCCCCcccEEEECC-----hh-hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        238 SQSEGNSTGGTAVARVIMNL-----PA-TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~np-----P~-~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                ..+|+|++.-     |. ....++..+.. +++        +|.+.+..+..
T Consensus       255 ----------~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p--------gG~l~i~e~~~  298 (359)
T 1x19_A          255 ----------PEADAVLFCRILYSANEQLSTIMCKKAFDAMRS--------GGRLLILDMVI  298 (359)
T ss_dssp             ----------CCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT--------TCEEEEEEECC
T ss_pred             ----------CCCCEEEEechhccCCHHHHHHHHHHHHHhcCC--------CCEEEEEeccc
Confidence                      1259998852     22 23456666655 555        48776665443

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.70  E-value=1.4e-09  Score=98.94  Aligned_cols=102  Identities=16%  Similarity=0.119  Sum_probs=69.0

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH-hCCCCCCCeEEE--eccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRL-NERQVKTPISAT--QKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~-n~~~l~~~v~~~--~~D~~~~~~~~~~~~~~~  236 (324)
                      +.+|.+|||+|||+|.++..++++ .+|+|+|+++ ++..++++... +.  ...++.++  ++|+.++.          
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~--~~~~v~~~~~~~D~~~l~----------  137 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITES--YGWNIVKFKSRVDIHTLP----------  137 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCB--TTGGGEEEECSCCTTTSC----------
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhc--cCCCeEEEecccCHhHCC----------
Confidence            568899999999999999999998 7899999998 43222211100 01  11158899  99988632          


Q ss_pred             hcccCCCCCCCCcccEEEECChhh----------hHHHHHHHhc-cchhhcCCCCCCC--EEEEEEcccC
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT----------AVEYVRYLKV-LTREEFGKLSRPP--VLYLYCFLPK  293 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~----------a~~~l~~~~~-l~~~~~~~~~~~g--~vh~y~f~~~  293 (324)
                                ...||.|++|....          ....++.+.. |+++        |  .+.+-.|.+.
T Consensus       138 ----------~~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpG--------G~~~fv~kv~~~~  189 (265)
T 2oxt_A          138 ----------VERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKN--------PSADFVVKVLCPY  189 (265)
T ss_dssp             ----------CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHC--------TTCEEEEEESCTT
T ss_pred             ----------CCCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccC--------CCeEEEEEeCCCC
Confidence                      13599999986511          1124454444 6664        8  8888888843

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.70  E-value=9.9e-09  Score=92.71  Aligned_cols=47  Identities=17%  Similarity=0.231  Sum_probs=42.5

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLN  207 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n  207 (324)
                      .+|.+|||+|||+|.+++.++..|+ +|+|+|+|+.|++.|+++++.+
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~  101 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKE  101 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTC
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcC
Confidence            4678999999999999998888887 7999999999999999998754

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.69  E-value=4.5e-08  Score=92.63  Aligned_cols=104  Identities=13%  Similarity=0.133  Sum_probs=78.3

Q ss_pred             cCCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      ....+|||+|||+|.++..+++  .+.+|+++|+ +.+++.|++++...+  +.++++++.+|+.+....          
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~----------  244 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLS--GSERIHGHGANLLDRDVP----------  244 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCT--TGGGEEEEECCCCSSSCC----------
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcC--cccceEEEEccccccCCC----------
Confidence            4667999999999999999998  4669999999 999999999998887  766899999998752000          


Q ss_pred             ccCCCCCCCCcccEEEE-----CChh-hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        239 QSEGNSTGGTAVARVIM-----NLPA-TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~-----npP~-~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                             .+..||.|++     +.|. ....++..+.. |+++        |.+.+..+..
T Consensus       245 -------~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pg--------G~l~i~e~~~  290 (363)
T 3dp7_A          245 -------FPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKD--------SKVYIMETLW  290 (363)
T ss_dssp             -------CCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTT--------CEEEEEECCT
T ss_pred             -------CCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCC--------cEEEEEeecc
Confidence                   0134999988     3333 23456766665 6664        7777665433

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.68  E-value=4.4e-08  Score=92.19  Aligned_cols=101  Identities=17%  Similarity=0.155  Sum_probs=78.6

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.++.+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++|+..++  +.++++++.+|+.+.+.          
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~----------  247 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG--LSDRVDVVEGDFFEPLP----------  247 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT--CTTTEEEEECCTTSCCS----------
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcC--CCCceEEEeCCCCCCCC----------
Confidence            346789999999999999999985  459999999 999999999999988  87789999999875211          


Q ss_pred             cccCCCCCCCCcccEEEEC-----Chhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        238 SQSEGNSTGGTAVARVIMN-----LPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~n-----pP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                                ..||.|++.     .|.. ...++..+.. |+++        |.+.+..+.
T Consensus       248 ----------~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pg--------G~l~i~e~~  290 (360)
T 1tw3_A          248 ----------RKADAIILSFVLLNWPDHDAVRILTRCAEALEPG--------GRILIHERD  290 (360)
T ss_dssp             ----------SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEE--------EEEEEEECC
T ss_pred             ----------CCccEEEEcccccCCCHHHHHHHHHHHHHhcCCC--------cEEEEEEEe
Confidence                      239999884     2322 2457777766 7765        777766655

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.68  E-value=2.3e-07  Score=84.56  Aligned_cols=107  Identities=17%  Similarity=0.130  Sum_probs=74.6

Q ss_pred             CCEEEEEcCCC---chhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHH--HH--HHh
Q psy16898        163 GDLVLDVFAGV---GPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQT--DA--RAH  233 (324)
Q Consensus       163 g~~VLDl~~G~---G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~--~~--~~~  233 (324)
                      ..+|||+|||+   |.++..+++  .+++|+++|+||.|++.|++++..+     ++++++++|+.+...-  ..  ...
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~-----~~v~~~~~D~~~~~~~~~~~~~~~~  152 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD-----PNTAVFTADVRDPEYILNHPDVRRM  152 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC-----TTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC-----CCeEEEEeeCCCchhhhccchhhcc
Confidence            47999999999   998876665  3679999999999999999988532     3799999999764211  00  000


Q ss_pred             hhhhcccCCCCCCCCcccEEEEC-----Chh-hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        234 LVRWSQSEGNSTGGTAVARVIMN-----LPA-TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       234 ~~~~~~~~~~~~~~~~fD~Vi~n-----pP~-~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                       ..          ...||.|+++     .|. ....++..+.. |+++        |++.+..+...
T Consensus       153 -~d----------~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pG--------G~l~i~~~~~~  200 (274)
T 2qe6_A          153 -ID----------FSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPG--------SYLFMTSLVDT  200 (274)
T ss_dssp             -CC----------TTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTT--------CEEEEEEEBCS
T ss_pred             -CC----------CCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCC--------cEEEEEEecCc
Confidence             00          1248999986     243 23456666665 6664        88877766653

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.67  E-value=1.4e-08  Score=91.65  Aligned_cols=76  Identities=11%  Similarity=0.143  Sum_probs=63.1

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      .+.+..+|||+|||+|.+++.++..  .++|+|+|+|+.+++.+++|+..|+  +.  ..+...|...-.          
T Consensus       129 ~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g--~~--~~~~v~D~~~~~----------  194 (281)
T 3lcv_B          129 HLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLN--VP--HRTNVADLLEDR----------  194 (281)
T ss_dssp             GSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTT--CC--EEEEECCTTTSC----------
T ss_pred             ccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcC--CC--ceEEEeeecccC----------
Confidence            4456779999999999999999874  4599999999999999999999999  75  788888865421          


Q ss_pred             hcccCCCCCCCCcccEEEECC
Q psy16898        237 WSQSEGNSTGGTAVARVIMNL  257 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~np  257 (324)
                               +...+|+++++.
T Consensus       195 ---------p~~~~DvaL~lk  206 (281)
T 3lcv_B          195 ---------LDEPADVTLLLK  206 (281)
T ss_dssp             ---------CCSCCSEEEETT
T ss_pred             ---------CCCCcchHHHHH
Confidence                     235699999984

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.67  E-value=7.3e-09  Score=92.42  Aligned_cols=98  Identities=10%  Similarity=0.026  Sum_probs=69.6

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc------CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH--HHHHHHH
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR------GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF--LQTDARA  232 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~------g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~--~~~~~~~  232 (324)
                      .++.+|||+|||+|..++.+|+.      +++|+|+|+++.+++.|+      +  +.++++++++|+.+.  +... . 
T Consensus        80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~--~~~~v~~~~gD~~~~~~l~~~-~-  149 (236)
T 2bm8_A           80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------S--DMENITLHQGDCSDLTTFEHL-R-  149 (236)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------G--GCTTEEEEECCSSCSGGGGGG-S-
T ss_pred             cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------c--cCCceEEEECcchhHHHHHhh-c-
Confidence            36789999999999999999986      679999999999998886      2  324799999999864  2211 0 


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECChhh-hHHHHHHHh--ccchhhcCCCCCCCEEEEEEc
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLK--VLTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~--~l~~~~~~~~~~~g~vh~y~f  290 (324)
                                    ...||.|++|.... ...++..+.  .|+        +||++.+..+
T Consensus       150 --------------~~~fD~I~~d~~~~~~~~~l~~~~r~~Lk--------pGG~lv~~d~  188 (236)
T 2bm8_A          150 --------------EMAHPLIFIDNAHANTFNIMKWAVDHLLE--------EGDYFIIEDM  188 (236)
T ss_dssp             --------------SSCSSEEEEESSCSSHHHHHHHHHHHTCC--------TTCEEEECSC
T ss_pred             --------------cCCCCEEEECCchHhHHHHHHHHHHhhCC--------CCCEEEEEeC
Confidence                          12499999886532 122333332  344        4588888654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.67  E-value=3.4e-08  Score=88.86  Aligned_cols=97  Identities=11%  Similarity=0.042  Sum_probs=72.4

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .++.+|||+|||+|.++..+++.  +++|+|+|+|+.+++.|+++.   .     ++.+..+|+.++...          
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~-----~~~~~~~d~~~~~~~----------  145 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---P-----QVTFCVASSHRLPFS----------  145 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---T-----TSEEEECCTTSCSBC----------
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC---C-----CcEEEEcchhhCCCC----------
Confidence            57889999999999999999986  779999999999999987653   1     478889998653211          


Q ss_pred             ccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCC
Q psy16898        239 QSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKM  294 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~  294 (324)
                              ...||.|+++....   ++..+.. |+++        |.+.+.......
T Consensus       146 --------~~~fD~v~~~~~~~---~l~~~~~~L~pg--------G~l~~~~~~~~~  183 (269)
T 1p91_A          146 --------DTSMDAIIRIYAPC---KAEELARVVKPG--------GWVITATPGPRH  183 (269)
T ss_dssp             --------TTCEEEEEEESCCC---CHHHHHHHEEEE--------EEEEEEEECTTT
T ss_pred             --------CCceeEEEEeCChh---hHHHHHHhcCCC--------cEEEEEEcCHHH
Confidence                    13599999865432   3455544 7765        888777666543

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.65  E-value=1.2e-07  Score=89.86  Aligned_cols=103  Identities=10%  Similarity=0.048  Sum_probs=79.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.++.+|||+|||+|.++..++++  +.+++++|+ +.+++.|++++...+  +.+++++..+|+.+..           
T Consensus       200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--l~~~v~~~~~d~~~~~-----------  265 (369)
T 3gwz_A          200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRG--LADRCEILPGDFFETI-----------  265 (369)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTTTCC-----------
T ss_pred             CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcC--cCCceEEeccCCCCCC-----------
Confidence            346789999999999999999985  569999999 999999999999888  8778999999987311           


Q ss_pred             cccCCCCCCCCcccEEEEC-----Chhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        238 SQSEGNSTGGTAVARVIMN-----LPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~n-----pP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                               +..||+|++.     .|.. ...++..+.. |++        ||.+.+..+...
T Consensus       266 ---------p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p--------gG~l~i~e~~~~  311 (369)
T 3gwz_A          266 ---------PDGADVYLIKHVLHDWDDDDVVRILRRIATAMKP--------DSRLLVIDNLID  311 (369)
T ss_dssp             ---------CSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT--------TCEEEEEEEBCC
T ss_pred             ---------CCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCC--------CCEEEEEEeccC
Confidence                     1249999883     3332 3457777766 665        488777655443

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.65  E-value=3.3e-08  Score=88.36  Aligned_cols=72  Identities=15%  Similarity=0.089  Sum_probs=61.5

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .+..+|||+|||+|.++++++ .+..++|+|+++.+++.+++|+..++  .+  ..+..+|......             
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g--~~--~~~~v~D~~~~~~-------------  165 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKD--WD--FTFALQDVLCAPP-------------  165 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTT--CE--EEEEECCTTTSCC-------------
T ss_pred             CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcC--CC--ceEEEeecccCCC-------------
Confidence            567899999999999999988 66699999999999999999999998  54  8889999764321             


Q ss_pred             CCCCCCCCcccEEEEC
Q psy16898        241 EGNSTGGTAVARVIMN  256 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~n  256 (324)
                            +..+|+|+++
T Consensus       166 ------~~~~DvvLll  175 (253)
T 3frh_A          166 ------AEAGDLALIF  175 (253)
T ss_dssp             ------CCBCSEEEEE
T ss_pred             ------CCCcchHHHH
Confidence                  3469999887

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.64  E-value=9.5e-08  Score=89.59  Aligned_cols=101  Identities=20%  Similarity=0.230  Sum_probs=78.3

Q ss_pred             CCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        163 GDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      +.+|||+|||+|.++..++++  +.+++++|+ +.+++.+++++...+  +.++++++.+|+.+.....           
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~-----------  245 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHD--LGGRVEFFEKNLLDARNFE-----------  245 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT--CGGGEEEEECCTTCGGGGT-----------
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcC--CCCceEEEeCCcccCcccC-----------
Confidence            789999999999999999985  569999999 899999999999888  8778999999987642100           


Q ss_pred             CCCCCCCCcccEEEEC-----Chh-hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        241 EGNSTGGTAVARVIMN-----LPA-TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~n-----pP~-~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                            ...||.|++.     .|. ....++..+.. |+++        |.+.+..+.
T Consensus       246 ------~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pg--------G~l~i~e~~  289 (352)
T 3mcz_A          246 ------GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPG--------GALLILTMT  289 (352)
T ss_dssp             ------TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEE--------EEEEEEEEC
T ss_pred             ------CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCC--------CEEEEEEec
Confidence                  1349999984     232 24567777766 7765        777666543

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.63  E-value=1.1e-07  Score=88.62  Aligned_cols=100  Identities=13%  Similarity=0.007  Sum_probs=78.0

Q ss_pred             CCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      ++.+|||+|||+|.++..+++  .+.+++++|+ +.+++.|++++...+  +.+++++..+|+.+-.             
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~-------------  232 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTG--LSGRAQVVVGSFFDPL-------------  232 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTTSCC-------------
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcC--cCcCeEEecCCCCCCC-------------
Confidence            567999999999999999998  3569999999 999999999999888  8778999999986311             


Q ss_pred             cCCCCCCCCcccEEEEC-----Chhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        240 SEGNSTGGTAVARVIMN-----LPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~n-----pP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                             +..||+|++.     .|.. ...++..+.. |+++        |.+.+..+..
T Consensus       233 -------p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pg--------G~l~i~e~~~  277 (332)
T 3i53_A          233 -------PAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSG--------GVVLVIEAVA  277 (332)
T ss_dssp             -------CCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTT--------CEEEEEECCC
T ss_pred             -------CCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCC--------CEEEEEeecC
Confidence                   1149999883     4432 3567777766 7765        7877766543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.57  E-value=9.1e-09  Score=91.74  Aligned_cols=43  Identities=30%  Similarity=0.426  Sum_probs=38.9

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASI  204 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~  204 (324)
                      ++.+|||+|||+|.++..+++.|+ +|+|+|+|+.|++.+++|.
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~   80 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSD   80 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTC
T ss_pred             CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhC
Confidence            577999999999999999999986 9999999999999877643

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.56  E-value=7.8e-08  Score=89.51  Aligned_cols=98  Identities=10%  Similarity=0.007  Sum_probs=75.7

Q ss_pred             CEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        164 DLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      .+|||+|||+|.++..++++  +.+++++|+ +.+++.+++++..++  +.++++++.+|+.+..               
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~---------------  230 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLL--AGERVSLVGGDMLQEV---------------  230 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHH--HTTSEEEEESCTTTCC---------------
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcC--CCCcEEEecCCCCCCC---------------
Confidence            89999999999999999985  569999999 999999999998877  7668999999987511               


Q ss_pred             CCCCCCCcccEEEECC-----h-hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        242 GNSTGGTAVARVIMNL-----P-ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~np-----P-~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                           +..||+|++.-     | .....++..+.. ++++        |.+.+..+..
T Consensus       231 -----~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pg--------G~l~i~e~~~  275 (334)
T 2ip2_A          231 -----PSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGD--------GRVVVIERTI  275 (334)
T ss_dssp             -----CSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTT--------CEEEEEECCB
T ss_pred             -----CCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCC--------CEEEEEEecc
Confidence                 13499999852     2 223456666665 6654        8777665543

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.55  E-value=1.6e-07  Score=85.53  Aligned_cols=91  Identities=19%  Similarity=0.214  Sum_probs=74.0

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +.+|++++|++||.|+.+..+++++++|+|+|.+|.|++.|++ +..      +++++++++..++........      
T Consensus        20 ~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~------~rv~lv~~~f~~l~~~L~~~g------   86 (285)
T 1wg8_A           20 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL------PGLTVVQGNFRHLKRHLAALG------   86 (285)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC------TTEEEEESCGGGHHHHHHHTT------
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc------CCEEEEECCcchHHHHHHHcC------
Confidence            4678999999999999999999987899999999999999988 532      279999999988754332210      


Q ss_pred             cCCCCCCCCcccEEEECChhhhHHHHHHHhc
Q psy16898        240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKV  270 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~  270 (324)
                             ...+|.|++||..++.++=++-++
T Consensus        87 -------~~~vDgIL~DLGvSS~Qld~~~RG  110 (285)
T 1wg8_A           87 -------VERVDGILADLGVSSFHLDDPSRG  110 (285)
T ss_dssp             -------CSCEEEEEEECSCCHHHHHCGGGC
T ss_pred             -------CCCcCEEEeCCccccccccccccC
Confidence                   135999999999988887555577

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.52  E-value=1.5e-08  Score=93.98  Aligned_cols=101  Identities=13%  Similarity=0.093  Sum_probs=66.3

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeC----CHHHHHHHHHHHHHhCCCC-CCCeEEEec-cHHHHHHHHHHHh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDL----NPDSYAWLQASIRLNERQV-KTPISATQK-DARDFLQTDARAH  233 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~----~~~a~~~a~~N~~~n~~~l-~~~v~~~~~-D~~~~~~~~~~~~  233 (324)
                      +.+|.+|||+|||+|.++..++++ ++|+|+|+    ++.+++.+.    .+.  . .++++++++ |+.++.       
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~----~~~--~~~~~v~~~~~~D~~~l~-------  145 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP----MST--YGWNLVRLQSGVDVFFIP-------  145 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC----CCS--TTGGGEEEECSCCTTTSC-------
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH----hhh--cCCCCeEEEeccccccCC-------
Confidence            567899999999999999999998 58999999    554332111    111  2 136899998 877531       


Q ss_pred             hhhhcccCCCCCCCCcccEEEECChhh----h------HHHHHHHhccchhhcCCCCCCCEEEEEEcccCC
Q psy16898        234 LVRWSQSEGNSTGGTAVARVIMNLPAT----A------VEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKM  294 (324)
Q Consensus       234 ~~~~~~~~~~~~~~~~fD~Vi~npP~~----a------~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~  294 (324)
                                   ...||+|++|.+..    .      ...+..+..       .+++||.+.+-.|.+..
T Consensus       146 -------------~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~-------~LkpGG~~v~kv~~~~~  196 (305)
T 2p41_A          146 -------------PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVEN-------WLSNNTQFCVKVLNPYM  196 (305)
T ss_dssp             -------------CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHH-------HCCTTCEEEEEESCCCS
T ss_pred             -------------cCCCCEEEECCccccCcchhhHHHHHHHHHHHHH-------HhCCCCEEEEEeCCCCC
Confidence                         13499999996521    0      122333322       23445888887776643

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.51  E-value=7.2e-08  Score=95.98  Aligned_cols=98  Identities=17%  Similarity=0.254  Sum_probs=70.9

Q ss_pred             eeecCcChHHHHH-HHhh--ccCCCEEEEEcCCCchhHHHHHhc---------------CCEEEEEeCCHHHHHHHHHHH
Q psy16898        143 VYWNSRLSTEHER-VTKE--VREGDLVLDVFAGVGPFSIPAARR---------------GAIVAANDLNPDSYAWLQASI  204 (324)
Q Consensus       143 ~f~~~r~~~e~~~-~~~~--~~~g~~VLDl~~G~G~~al~~a~~---------------g~~V~avD~~~~a~~~a~~N~  204 (324)
                      -|+.|+   +.-+ +++.  ..+|.+|+|.+||+|+|.+.+.+.               ...++|+|+++.++..|+.|+
T Consensus       198 qfyTP~---~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl  274 (530)
T 3ufb_A          198 EFYTPR---PVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNL  274 (530)
T ss_dssp             CCCCCH---HHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHH
T ss_pred             eECCcH---HHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHH
Confidence            366677   3333 3333  346789999999999999888651               236999999999999999999


Q ss_pred             HHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        205 RLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       205 ~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      -+.+  +. ...+.++|..........              ...+||+||+|||..
T Consensus       275 ~lhg--~~-~~~I~~~dtL~~~~~~~~--------------~~~~fD~Il~NPPf~  313 (530)
T 3ufb_A          275 LLHG--LE-YPRIDPENSLRFPLREMG--------------DKDRVDVILTNPPFG  313 (530)
T ss_dssp             HHHT--CS-CCEEECSCTTCSCGGGCC--------------GGGCBSEEEECCCSS
T ss_pred             HhcC--Cc-cccccccccccCchhhhc--------------ccccceEEEecCCCC
Confidence            9998  76 456778887643211100              023599999999995

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.51  E-value=9.7e-08  Score=87.90  Aligned_cols=57  Identities=25%  Similarity=0.331  Sum_probs=43.8

Q ss_pred             ecCcChHHHHHHHhhc---cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHH
Q psy16898        145 WNSRLSTEHERVTKEV---REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQ  201 (324)
Q Consensus       145 ~~~r~~~e~~~~~~~~---~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~  201 (324)
                      |.+|-......+++.+   .+|.+|||+|||||.|+..+++.|+ +|+|+|+++.|++++.
T Consensus        65 yvsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~  125 (291)
T 3hp7_A           65 YVSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKL  125 (291)
T ss_dssp             SSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHH
T ss_pred             cccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            3455443333444443   2678999999999999999999886 9999999999999854

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.51  E-value=1.3e-07  Score=86.16  Aligned_cols=44  Identities=14%  Similarity=0.123  Sum_probs=38.3

Q ss_pred             CCCEEEEEcCCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQASIR  205 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~  205 (324)
                      ++.+|||+|||+|.+++.+++ .+.+|+|+|+|+.|++.|+++++
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~  115 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQ  115 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHh
Confidence            678999999999997776665 46799999999999999998765

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.48  E-value=8.9e-07  Score=80.87  Aligned_cols=108  Identities=6%  Similarity=0.113  Sum_probs=69.8

Q ss_pred             cCCCEEEEEcCCCchhHHHHH----h--cCCEE--EEEeCCHHHHHHHHHHHHHh-CCCCCCCe--EEEeccHHHHHHHH
Q psy16898        161 REGDLVLDVFAGVGPFSIPAA----R--RGAIV--AANDLNPDSYAWLQASIRLN-ERQVKTPI--SATQKDARDFLQTD  229 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a----~--~g~~V--~avD~~~~a~~~a~~N~~~n-~~~l~~~v--~~~~~D~~~~~~~~  229 (324)
                      .++.+|||+|||+|.++..++    .  .+..|  +|+|.|+.|++.|++++... +  +. ++  .+..+++.++....
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~--~~-~v~~~~~~~~~~~~~~~~  127 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSN--LE-NVKFAWHKETSSEYQSRM  127 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSS--CT-TEEEEEECSCHHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccC--CC-cceEEEEecchhhhhhhh
Confidence            356799999999998876433    2  24544  99999999999999998753 3  43 44  45677877654321


Q ss_pred             HHHhhhhhcccCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        230 ARAHLVRWSQSEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                      ...            -....||+|++.     .|+ ...++..+.. |+++        |.+.+-.+..
T Consensus       128 ~~~------------~~~~~fD~V~~~~~l~~~~d-~~~~l~~~~r~Lkpg--------G~l~i~~~~~  175 (292)
T 2aot_A          128 LEK------------KELQKWDFIHMIQMLYYVKD-IPATLKFFHSLLGTN--------AKMLIIVVSG  175 (292)
T ss_dssp             HTT------------TCCCCEEEEEEESCGGGCSC-HHHHHHHHHHTEEEE--------EEEEEEEECT
T ss_pred             ccc------------cCCCceeEEEEeeeeeecCC-HHHHHHHHHHHcCCC--------cEEEEEEecC
Confidence            100            002459999985     333 2345666655 7776        7777655443

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.47  E-value=2.3e-07  Score=89.11  Aligned_cols=89  Identities=9%  Similarity=0.084  Sum_probs=63.0

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeE-EEeccHHHHHHHHHHHhhhhhcc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPIS-ATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~-~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .++.+|||+|||+|.++..+++.|.+|+|+|+|+.+++.|+++    +  +..... +...++.++...           
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~----~--~~~~~~~~~~~~~~~l~~~-----------  168 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK----G--IRVRTDFFEKATADDVRRT-----------  168 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT----T--CCEECSCCSHHHHHHHHHH-----------
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc----C--CCcceeeechhhHhhcccC-----------
Confidence            4788999999999999999999999999999999999998875    4  431111 222333332211           


Q ss_pred             cCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchh
Q psy16898        240 SEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~  274 (324)
                             ...||+|+++     .|. ...++..+.. |+++
T Consensus       169 -------~~~fD~I~~~~vl~h~~d-~~~~l~~~~r~Lkpg  201 (416)
T 4e2x_A          169 -------EGPANVIYAANTLCHIPY-VQSVLEGVDALLAPD  201 (416)
T ss_dssp             -------HCCEEEEEEESCGGGCTT-HHHHHHHHHHHEEEE
T ss_pred             -------CCCEEEEEECChHHhcCC-HHHHHHHHHHHcCCC
Confidence                   1359999986     232 3457777766 7775

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.47  E-value=2.9e-07  Score=80.29  Aligned_cols=96  Identities=9%  Similarity=0.044  Sum_probs=68.7

Q ss_pred             HhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        157 TKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       157 ~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +..+.++.+|||+|||+|.++..+++.    +++|+|+.+++.++++    +      ++++++|+.++...        
T Consensus        42 l~~~~~~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~----~------~~~~~~d~~~~~~~--------   99 (219)
T 1vlm_A           42 VKCLLPEGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR----G------VFVLKGTAENLPLK--------   99 (219)
T ss_dssp             HHHHCCSSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT----T------CEEEECBTTBCCSC--------
T ss_pred             HHHhCCCCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc----C------CEEEEcccccCCCC--------
Confidence            333445889999999999999998876    9999999999998876    4      56788887653211        


Q ss_pred             hcccCCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                ...||.|+++-.-    ....++..+.. |+++        |.+.+..+..
T Consensus       100 ----------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg--------G~l~i~~~~~  142 (219)
T 1vlm_A          100 ----------DESFDFALMVTTICFVDDPERALKEAYRILKKG--------GYLIVGIVDR  142 (219)
T ss_dssp             ----------TTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEE--------EEEEEEEECS
T ss_pred             ----------CCCeeEEEEcchHhhccCHHHHHHHHHHHcCCC--------cEEEEEEeCC
Confidence                      2359999986321    13456666665 7765        7776665543

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.47  E-value=7.6e-08  Score=98.87  Aligned_cols=80  Identities=21%  Similarity=0.226  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcC-----CEEEEEeCCHHHHHHH--HHHHHHhCCCCCC---CeEEEeccHHHHHHHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRG-----AIVAANDLNPDSYAWL--QASIRLNERQVKT---PISATQKDARDFLQTDAR  231 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g-----~~V~avD~~~~a~~~a--~~N~~~n~~~l~~---~v~~~~~D~~~~~~~~~~  231 (324)
                      ++.+|||+|||+|.|.+.+++..     ..++|+|+++.+++.|  +.|+..|.  +..   ...+...|..+.....  
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~--LlhGi~~~~I~~dD~L~~~~~~--  396 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ--LVSSNNAPTITGEDVCSLNPED--  396 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT--TCBTTBCCEEECCCGGGCCGGG--
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh--hhcCCCcceEEecchhcccccc--
Confidence            57899999999999999999853     3799999999999999  88887654  321   2355666665421100  


Q ss_pred             HhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        232 AHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                     ...||+||+|||+.
T Consensus       397 ---------------~~kFDVVIgNPPYg  410 (878)
T 3s1s_A          397 ---------------FANVSVVVMNPPYV  410 (878)
T ss_dssp             ---------------GTTEEEEEECCBCC
T ss_pred             ---------------cCCCCEEEECCCcc
Confidence                           13599999999994

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.44  E-value=1.4e-06  Score=75.92  Aligned_cols=138  Identities=14%  Similarity=0.053  Sum_probs=88.8

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCC--CCCeEEEeccHHHH----------
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQV--KTPISATQKDARDF----------  225 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l--~~~v~~~~~D~~~~----------  225 (324)
                      .+.+.++||++||  |.-++.+|+. +++|+++|.+++..+.|++|++.++  +  .++++++.+|+.+.          
T Consensus        27 ~l~~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g--~~~~~~I~~~~gda~~~~~wg~p~~~~  102 (202)
T 3cvo_A           27 AYEEAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANP--PAEGTEVNIVWTDIGPTGDWGHPVSDA  102 (202)
T ss_dssp             HHHHCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSC--CCTTCEEEEEECCCSSBCGGGCBSSST
T ss_pred             HhhCCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCCceEEEEeCchhhhcccccccch
Confidence            4557789999998  5677778875 6799999999999999999999999  8  77899999997543          


Q ss_pred             ----HHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc-cCCChhHH
Q psy16898        226 ----LQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL-PKMDLETK  299 (324)
Q Consensus       226 ----~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~-~~~~~~~~  299 (324)
                          +...... +...       .....||.|++|-.... .++..... +++        ||+|.+..+. +.......
T Consensus       103 ~~~~l~~~~~~-i~~~-------~~~~~fDlIfIDg~k~~-~~~~~~l~~l~~--------GG~Iv~DNv~~r~~y~~v~  165 (202)
T 3cvo_A          103 KWRSYPDYPLA-VWRT-------EGFRHPDVVLVDGRFRV-GCALATAFSITR--------PVTLLFDDYSQRRWQHQVE  165 (202)
T ss_dssp             TGGGTTHHHHG-GGGC-------TTCCCCSEEEECSSSHH-HHHHHHHHHCSS--------CEEEEETTGGGCSSGGGGH
T ss_pred             hhhhHHHHhhh-hhcc-------ccCCCCCEEEEeCCCch-hHHHHHHHhcCC--------CeEEEEeCCcCCcchHHHH
Confidence                1111110 0000       00145999999976432 33333333 544        5888766543 33444445


Q ss_pred             hHhhhcCCCceEEEEeec
Q psy16898        300 KKIKSYDPSYATLIRGIR  317 (324)
Q Consensus       300 ~~v~~y~~~~~~~i~~~~  317 (324)
                      +.++.-....++.+..++
T Consensus       166 ~~~~~~~~~~~~a~f~~~  183 (202)
T 3cvo_A          166 EFLGAPLMIGRLAAFQVE  183 (202)
T ss_dssp             HHHCCCEEETTEEEEEEC
T ss_pred             HHHhHHhhcCceEEEEeC
Confidence            555432223356666654

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.40  E-value=8.3e-07  Score=89.96  Aligned_cols=96  Identities=15%  Similarity=0.135  Sum_probs=69.4

Q ss_pred             CCEEEEEcCCCchhHH---HHHh-cC-----------CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHH
Q psy16898        163 GDLVLDVFAGVGPFSI---PAAR-RG-----------AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQ  227 (324)
Q Consensus       163 g~~VLDl~~G~G~~al---~~a~-~g-----------~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~  227 (324)
                      +.+|||+|||+|.++.   .+++ .|           .+|+|||.|+.|+..++.... |+  +.++|+++.+|++++-.
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng--~~d~VtVI~gd~eev~l  486 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RT--WKRRVTIIESDMRSLPG  486 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HT--TTTCSEEEESCGGGHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cC--CCCeEEEEeCchhhccc
Confidence            4589999999999964   3443 22           299999999999887776665 88  88889999999999854


Q ss_pred             HHHHHhhhhhcccCCCCCCCCcccEEEECChhh------hHHHHHHHhc-cchh
Q psy16898        228 TDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT------AVEYVRYLKV-LTRE  274 (324)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~------a~~~l~~~~~-l~~~  274 (324)
                      ....+             ...++|+||+-+-..      ..+.|+.+.. |+++
T Consensus       487 p~~~~-------------~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~  527 (745)
T 3ua3_A          487 IAKDR-------------GFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPT  527 (745)
T ss_dssp             HHHHT-------------TCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTT
T ss_pred             ccccC-------------CCCcccEEEEeccccccchhccHHHHHHHHHhCCCC
Confidence            21111             124699999987752      3356666655 5554

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.38  E-value=2.5e-07  Score=80.42  Aligned_cols=100  Identities=14%  Similarity=0.126  Sum_probs=69.6

Q ss_pred             HHhhc-cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898        156 VTKEV-REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       156 ~~~~~-~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      +++.+ .++.+|||+|||+|.++..+++.|.+|+++|+|+.+++.++++.          ..++.+|+.++....     
T Consensus        25 l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~----------~~~~~~d~~~~~~~~-----   89 (230)
T 3cc8_A           25 LLKHIKKEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL----------DHVVLGDIETMDMPY-----   89 (230)
T ss_dssp             HHTTCCTTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS----------SEEEESCTTTCCCCS-----
T ss_pred             HHHHhccCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC----------CcEEEcchhhcCCCC-----
Confidence            44444 47889999999999999999998889999999999999886432          257778876421110     


Q ss_pred             hhhcccCCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                                 ....||.|+++-.-    ....++..+.. ++++        |.+.+..
T Consensus        90 -----------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~g--------G~l~~~~  130 (230)
T 3cc8_A           90 -----------EEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQN--------GVILASI  130 (230)
T ss_dssp             -----------CTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEE--------EEEEEEE
T ss_pred             -----------CCCccCEEEECChhhhcCCHHHHHHHHHHHcCCC--------CEEEEEe
Confidence                       01359999985321    12456666666 6665        6666544

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.34  E-value=5.2e-07  Score=82.41  Aligned_cols=43  Identities=21%  Similarity=0.167  Sum_probs=36.6

Q ss_pred             CCCEEEEEcCCCch----hHHHHHhc------CCEEEEEeCCHHHHHHHHHHH
Q psy16898        162 EGDLVLDVFAGVGP----FSIPAARR------GAIVAANDLNPDSYAWLQASI  204 (324)
Q Consensus       162 ~g~~VLDl~~G~G~----~al~~a~~------g~~V~avD~~~~a~~~a~~N~  204 (324)
                      ++.+|||+|||||.    +++.+++.      +.+|+|+|+|+.|++.|++++
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~  157 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI  157 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcC
Confidence            45699999999998    77777663      359999999999999999985

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.34  E-value=5.3e-07  Score=91.06  Aligned_cols=90  Identities=18%  Similarity=0.273  Sum_probs=68.9

Q ss_pred             CCEEEEEcCCCchh---HHHHHhcC-C--EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        163 GDLVLDVFAGVGPF---SIPAARRG-A--IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       163 g~~VLDl~~G~G~~---al~~a~~g-~--~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.+|||+|||+|.+   ++.|++++ .  +|+|||.|+.|. .+++..+.|+  +.++|+++++|++++-.         
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~-~a~~~v~~N~--~~dkVtVI~gd~eev~L---------  425 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV-VTLENWQFEE--WGSQVTVVSSDMREWVA---------  425 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH-HHHHHHHHHT--TGGGEEEEESCTTTCCC---------
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH-HHHHHHHhcc--CCCeEEEEeCcceeccC---------
Confidence            45899999999999   55555543 3  789999998554 6788899999  99999999999987521         


Q ss_pred             hcccCCCCCCCCcccEEEECChh------hhHHHHHHHhc-cchh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPA------TAVEYVRYLKV-LTRE  274 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~------~a~~~l~~~~~-l~~~  274 (324)
                                ++++|+||+.+=.      +..+.+.+... |+++
T Consensus       426 ----------PEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPg  460 (637)
T 4gqb_A          426 ----------PEKADIIVSELLGSFADNELSPECLDGAQHFLKDD  460 (637)
T ss_dssp             ----------SSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEE
T ss_pred             ----------CcccCEEEEEcCcccccccCCHHHHHHHHHhcCCC
Confidence                      3569999997433      34567777766 7776

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=98.32  E-value=9.3e-07  Score=79.84  Aligned_cols=49  Identities=29%  Similarity=0.342  Sum_probs=44.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhC
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNE  208 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~  208 (324)
                      ..+|+.|||+|||+|+.++.+++.|.+++|+|+++.+++.+++|++.++
T Consensus       210 ~~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          210 SNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            3589999999999999999999999999999999999999999998776

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.32  E-value=1.8e-06  Score=79.51  Aligned_cols=47  Identities=34%  Similarity=0.396  Sum_probs=44.6

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLN  207 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n  207 (324)
                      .+|++|||+|||+|++++.+++.|.+++|+|+++.+++.|++|++..
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            58899999999999999999999999999999999999999999765

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.29  E-value=6.6e-06  Score=74.96  Aligned_cols=109  Identities=17%  Similarity=0.080  Sum_probs=70.5

Q ss_pred             CEEEEEcCCC--chhHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        164 DLVLDVFAGV--GPFSIPAAR---RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       164 ~~VLDl~~G~--G~~al~~a~---~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      ..|||+|||+  +.....+++   .+++|+++|.||.|++.|++++..+.  . .+++++++|+.+...-.......   
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~--~-~~~~~v~aD~~~~~~~l~~~~~~---  153 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP--E-GRTAYVEADMLDPASILDAPELR---  153 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS--S-SEEEEEECCTTCHHHHHTCHHHH---
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC--C-CcEEEEEecccChhhhhcccccc---
Confidence            6899999998  444455544   46799999999999999998886443  2 37999999998863210000000   


Q ss_pred             ccCCCCCCCCccc-----EEEEC-----Chhh--hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCC
Q psy16898        239 QSEGNSTGGTAVA-----RVIMN-----LPAT--AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMD  295 (324)
Q Consensus       239 ~~~~~~~~~~~fD-----~Vi~n-----pP~~--a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~  295 (324)
                               ..||     .|++|     +|..  ....+..+.. |++        ||++.+..++....
T Consensus       154 ---------~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P--------GG~Lvls~~~~d~~  206 (277)
T 3giw_A          154 ---------DTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS--------GSYLAMSIGTAEFA  206 (277)
T ss_dssp             ---------TTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT--------TCEEEEEEECCTTS
T ss_pred             ---------cccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC--------CcEEEEEeccCCCC
Confidence                     1133     56676     3332  2456666655 555        48887776766543

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.29  E-value=8.3e-07  Score=81.66  Aligned_cols=102  Identities=13%  Similarity=0.100  Sum_probs=67.6

Q ss_pred             ccCCCEEEEEcC------CCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEE-EeccHHHHHHHHH
Q psy16898        160 VREGDLVLDVFA------GVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISA-TQKDARDFLQTDA  230 (324)
Q Consensus       160 ~~~g~~VLDl~~------G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~-~~~D~~~~~~~~~  230 (324)
                      +.+|.+|||+||      |+|+ .+.+...  +++|+|+|+++.          ..      ++++ +++|+.+...   
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~----------v~------~v~~~i~gD~~~~~~---  120 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF----------VS------DADSTLIGDCATVHT---  120 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC----------BC------SSSEEEESCGGGCCC---
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC----------CC------CCEEEEECccccCCc---
Confidence            568899999999      4577 3333333  469999999997          12      3667 9999876321   


Q ss_pred             HHhhhhhcccCCCCCCCCcccEEEECChhhh---------------HHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCC
Q psy16898        231 RAHLVRWSQSEGNSTGGTAVARVIMNLPATA---------------VEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKM  294 (324)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a---------------~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~  294 (324)
                                      ...||+|++|++...               ...+..+.. |+++        |.+.+..|....
T Consensus       121 ----------------~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpG--------G~~v~~~~~~~~  176 (290)
T 2xyq_A          121 ----------------ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALG--------GSIAVKITEHSW  176 (290)
T ss_dssp             ----------------SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEE--------EEEEEEECSSSC
T ss_pred             ----------------cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCC--------cEEEEEEeccCC
Confidence                            134999999964211               134444444 6665        899988888776


Q ss_pred             ChhHHhHhhhc
Q psy16898        295 DLETKKKIKSY  305 (324)
Q Consensus       295 ~~~~~~~v~~y  305 (324)
                      ..+..+..+.+
T Consensus       177 ~~~l~~~l~~~  187 (290)
T 2xyq_A          177 NADLYKLMGHF  187 (290)
T ss_dssp             CHHHHHHHTTE
T ss_pred             HHHHHHHHHHc
Confidence            66555555443

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=98.23  E-value=9.7e-07  Score=83.09  Aligned_cols=73  Identities=19%  Similarity=0.228  Sum_probs=57.6

Q ss_pred             CEEEEEcCCCchhHHHHHhcC--C-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        164 DLVLDVFAGVGPFSIPAARRG--A-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~~g--~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .+|+|||||+|++++.+.+.|  + .|+++|+++.|++..+.|..        +..++++|+.++.......        
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~--------~~~~~~~Di~~~~~~~~~~--------   66 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP--------HTQLLAKTIEGITLEEFDR--------   66 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT--------TSCEECSCGGGCCHHHHHH--------
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc--------ccccccCCHHHccHhHcCc--------
Confidence            479999999999999999988  4 79999999999999888763        2346789998865432221        


Q ss_pred             CCCCCCCCcccEEEECChh
Q psy16898        241 EGNSTGGTAVARVIMNLPA  259 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP~  259 (324)
                             ..+|+|+++||.
T Consensus        67 -------~~~D~l~~gpPC   78 (343)
T 1g55_A           67 -------LSFDMILMSPPC   78 (343)
T ss_dssp             -------HCCSEEEECCC-
T ss_pred             -------CCcCEEEEcCCC
Confidence                   139999999995

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=98.20  E-value=3.5e-06  Score=80.31  Aligned_cols=78  Identities=21%  Similarity=0.254  Sum_probs=59.1

Q ss_pred             CEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCC
Q psy16898        164 DLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEG  242 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~  242 (324)
                      .+|+|||||+|++++.+.+.|. .|.|+|+++.|++..+.|..        +..++++|+.++...........      
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~--------~~~~~~~DI~~~~~~~~~~~~~~------   68 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP--------RSLHVQEDVSLLNAEIIKGFFKN------   68 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT--------TSEEECCCGGGCCHHHHHHHHCS------
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC--------CCceEecChhhcCHHHHHhhccc------
Confidence            4799999999999999999998 57799999999998877642        35788999988644322110000      


Q ss_pred             CCCCCCcccEEEECChh
Q psy16898        243 NSTGGTAVARVIMNLPA  259 (324)
Q Consensus       243 ~~~~~~~fD~Vi~npP~  259 (324)
                          ...+|+|+.+||.
T Consensus        69 ----~~~~D~i~ggpPC   81 (376)
T 3g7u_A           69 ----DMPIDGIIGGPPC   81 (376)
T ss_dssp             ----CCCCCEEEECCCC
T ss_pred             ----CCCeeEEEecCCC
Confidence                2359999999993

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.19  E-value=1e-06  Score=82.62  Aligned_cols=99  Identities=13%  Similarity=0.085  Sum_probs=68.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.++.+|||+|||+|.++..++++  +.+++++|+ +.++.  +++++..+  +.++++++.+|+.+..           
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~--~~~~v~~~~~d~~~~~-----------  245 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPD--VAGRWKVVEGDFLREV-----------  245 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGG--GTTSEEEEECCTTTCC-----------
T ss_pred             ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccC--CCCCeEEEecCCCCCC-----------
Confidence            346789999999999999999984  458999999 44544  44443344  5568999999986211           


Q ss_pred             cccCCCCCCCCcccEEEEC-----Chhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        238 SQSEGNSTGGTAVARVIMN-----LPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~n-----pP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                               + .||+|++.     .|.. ...++..+.. |+++        |.+.+..+..
T Consensus       246 ---------p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lkpg--------G~l~i~e~~~  289 (348)
T 3lst_A          246 ---------P-HADVHVLKRILHNWGDEDSVRILTNCRRVMPAH--------GRVLVIDAVV  289 (348)
T ss_dssp             ---------C-CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTT--------CEEEEEECCB
T ss_pred             ---------C-CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCC--------CEEEEEEecc
Confidence                     1 39999884     3432 2466666665 6654        8887766543

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.17  E-value=4.2e-06  Score=80.07  Aligned_cols=97  Identities=16%  Similarity=0.003  Sum_probs=64.9

Q ss_pred             cCCCEEEEEcCC------CchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHH--HH
Q psy16898        161 REGDLVLDVFAG------VGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQ--TD  229 (324)
Q Consensus       161 ~~g~~VLDl~~G------~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~--~~  229 (324)
                      .++.+|||+|||      +|..++.++++   +++|+|+|+|+.|.         ..  . .+++++++|+.+...  ..
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~--~-~rI~fv~GDa~dlpf~~~l  282 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VD--E-LRIRTIQGDQNDAEFLDRI  282 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GC--B-TTEEEEECCTTCHHHHHHH
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hc--C-CCcEEEEecccccchhhhh
Confidence            467899999999      88888888863   67999999999972         12  2 379999999987432  22


Q ss_pred             HHHhhhhhcccCCCCCCCCcccEEEECChhh---hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        230 ARAHLVRWSQSEGNSTGGTAVARVIMNLPAT---AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~---a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                      ...              ...||.|++|--..   ...++..+.. |+++        |++.+....
T Consensus       283 ~~~--------------d~sFDlVisdgsH~~~d~~~aL~el~rvLKPG--------GvlVi~Dl~  326 (419)
T 3sso_A          283 ARR--------------YGPFDIVIDDGSHINAHVRTSFAALFPHVRPG--------GLYVIEDMW  326 (419)
T ss_dssp             HHH--------------HCCEEEEEECSCCCHHHHHHHHHHHGGGEEEE--------EEEEEECGG
T ss_pred             hcc--------------cCCccEEEECCcccchhHHHHHHHHHHhcCCC--------eEEEEEecc
Confidence            110              03599999984321   1233444433 6654        777775443

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.13  E-value=1.9e-06  Score=70.90  Aligned_cols=71  Identities=17%  Similarity=0.088  Sum_probs=53.4

Q ss_pred             HHhhccCCCEEEEEcCCCc-hhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHh
Q psy16898        156 VTKEVREGDLVLDVFAGVG-PFSIPAAR-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAH  233 (324)
Q Consensus       156 ~~~~~~~g~~VLDl~~G~G-~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~  233 (324)
                      +.+...++.+|||+|||.| ..|..+++ .|..|+|+|+||.|++                  +++.|+++-..+..   
T Consensus        29 I~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~------------------~v~dDiF~P~~~~Y---   87 (153)
T 2k4m_A           29 IIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG------------------IVRDDITSPRMEIY---   87 (153)
T ss_dssp             HHHHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT------------------EECCCSSSCCHHHH---
T ss_pred             HHhcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc------------------eEEccCCCCccccc---
Confidence            3445666789999999999 59999997 8999999999996544                  56667765322211   


Q ss_pred             hhhhcccCCCCCCCCcccEE-EECChhhh
Q psy16898        234 LVRWSQSEGNSTGGTAVARV-IMNLPATA  261 (324)
Q Consensus       234 ~~~~~~~~~~~~~~~~fD~V-i~npP~~a  261 (324)
                                    ..||.| -.|||.--
T Consensus        88 --------------~~~DLIYsirPP~El  102 (153)
T 2k4m_A           88 --------------RGAALIYSIRPPAEI  102 (153)
T ss_dssp             --------------TTEEEEEEESCCTTT
T ss_pred             --------------CCcCEEEEcCCCHHH
Confidence                          139999 88998843

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.08  E-value=3.9e-06  Score=78.77  Aligned_cols=97  Identities=11%  Similarity=0.080  Sum_probs=68.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.++.+|||+|||+|.++..++++  +.+++++|+ +.+++.+++        .+ +++++.+|+.+-   .        
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~-~v~~~~~d~~~~---~--------  244 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG--------SN-NLTYVGGDMFTS---I--------  244 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC--------BT-TEEEEECCTTTC---C--------
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc--------CC-CcEEEeccccCC---C--------
Confidence            456789999999999999999985  569999999 999887653        22 599999998641   0        


Q ss_pred             cccCCCCCCCCcccEEEEC-----Chh-hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        238 SQSEGNSTGGTAVARVIMN-----LPA-TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~n-----pP~-~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                ..||.|++.     .|. ....++..+.. |++..     +||.+.+..+..
T Consensus       245 ----------p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~-----~gG~l~i~e~~~  291 (352)
T 1fp2_A          245 ----------PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDG-----KRGKVTIIDMVI  291 (352)
T ss_dssp             ----------CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGG-----CCCEEEEEECEE
T ss_pred             ----------CCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCC-----CCcEEEEEEeec
Confidence                      129999884     333 12356666665 77610     037777665544

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.07  E-value=2.8e-05  Score=73.77  Aligned_cols=110  Identities=15%  Similarity=0.064  Sum_probs=79.1

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHH-hCCCCC----CCeEEEeccHHHHHHHHHHHhhh
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRG-AIVAANDLNPDSYAWLQASIRL-NERQVK----TPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g-~~V~avD~~~~a~~~a~~N~~~-n~~~l~----~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      +.++||=+|.|.|..+..+++.. .+|+.||++|..++.+++-+.. ++..++    ++++++.+|+++++++....   
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~---  281 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE---  281 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH---
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc---
Confidence            56899999999999999999844 4999999999999999986421 110011    36899999999999875442   


Q ss_pred             hhcccCCCCCCCCcccEEEECChh--------------hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLPA--------------TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP~--------------~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                                 ..+||+||+|+++              ...+|.+..+. |+++        |++...+-+..
T Consensus       282 -----------~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~--------GVlv~Q~~s~~  335 (381)
T 3c6k_A          282 -----------GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQD--------GKYFTQGNCVN  335 (381)
T ss_dssp             -----------TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEE--------EEEEEEEEETT
T ss_pred             -----------cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCC--------CEEEEecCCCc
Confidence                       2469999999643              12356666655 7765        77766544443

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.06  E-value=9.6e-06  Score=76.37  Aligned_cols=100  Identities=12%  Similarity=0.078  Sum_probs=72.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.+..+|+|+|||+|.+++.++++  +.+++..|+ |.+++.|++++...+   .++++++.+|.++-.           
T Consensus       177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~---~~rv~~~~gD~~~~~-----------  241 (353)
T 4a6d_A          177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE---EEQIDFQEGDFFKDP-----------  241 (353)
T ss_dssp             GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-----CCSEEEEESCTTTSC-----------
T ss_pred             cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc---cCceeeecCccccCC-----------
Confidence            346779999999999999999984  558888897 889999998886544   358999999976411           


Q ss_pred             cccCCCCCCCCcccEEEE-----CChh-hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        238 SQSEGNSTGGTAVARVIM-----NLPA-TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~-----npP~-~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                               ...+|+|++     |-|+ ....+|..+.. ++++        |.+.+..+.
T Consensus       242 ---------~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pg--------g~lli~e~~  285 (353)
T 4a6d_A          242 ---------LPEADLYILARVLHDWADGKCSHLLERIYHTCKPG--------GGILVIESL  285 (353)
T ss_dssp             ---------CCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTT--------CEEEEEECC
T ss_pred             ---------CCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCC--------CEEEEEEee
Confidence                     123798887     3443 35667777766 7765        666655443

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.02  E-value=2.1e-05  Score=72.30  Aligned_cols=108  Identities=10%  Similarity=0.091  Sum_probs=82.7

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHH-hCCCC-CCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR-G-AIVAANDLNPDSYAWLQASIRL-NERQV-KTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~-g-~~V~avD~~~~a~~~a~~N~~~-n~~~l-~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ...++||=+|.|.|+.+..+++. + .+|+.||+++..++.+++-+.. ++..+ +.+++++.+|++.++...       
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~-------  154 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT-------  154 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCS-------
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhc-------
Confidence            46679999999999999999984 3 5999999999999999987632 22002 248999999999987642       


Q ss_pred             hcccCCCCCCCCcccEEEECChh--------hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPA--------TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~--------~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                                ..+||+||+|+++        .+.+|.+.++. |+++        |++.+.+-++.
T Consensus       155 ----------~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~--------Gv~v~q~~sp~  202 (294)
T 3o4f_A          155 ----------SQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPG--------GIFVAQNGVCF  202 (294)
T ss_dssp             ----------SCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEE--------EEEEEEEEESS
T ss_pred             ----------cccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCC--------CEEEEecCCcc
Confidence                      2469999999765        24578888877 8876        77776654443

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=97.98  E-value=3.6e-06  Score=72.79  Aligned_cols=86  Identities=14%  Similarity=0.047  Sum_probs=60.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      ..++.+|||+|||+|.++..++   .+|+|+|+++.            +      +.++.+|+.+....           
T Consensus        65 ~~~~~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~------------~------~~~~~~d~~~~~~~-----------  112 (215)
T 2zfu_A           65 RPASLVVADFGCGDCRLASSIR---NPVHCFDLASL------------D------PRVTVCDMAQVPLE-----------  112 (215)
T ss_dssp             SCTTSCEEEETCTTCHHHHHCC---SCEEEEESSCS------------S------TTEEESCTTSCSCC-----------
T ss_pred             cCCCCeEEEECCcCCHHHHHhh---ccEEEEeCCCC------------C------ceEEEeccccCCCC-----------
Confidence            4577899999999999998873   68999999987            3      34667787652110           


Q ss_pred             cCCCCCCCCcccEEEECCh---hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        240 SEGNSTGGTAVARVIMNLP---ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP---~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                             ...||.|+++..   .....++..+.. |+++        |.+.+..+..
T Consensus       113 -------~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~g--------G~l~i~~~~~  154 (215)
T 2zfu_A          113 -------DESVDVAVFCLSLMGTNIRDFLEEANRVLKPG--------GLLKVAEVSS  154 (215)
T ss_dssp             -------TTCEEEEEEESCCCSSCHHHHHHHHHHHEEEE--------EEEEEEECGG
T ss_pred             -------CCCEeEEEEehhccccCHHHHHHHHHHhCCCC--------eEEEEEEcCC
Confidence                   235999998643   123456666655 7765        7777766554

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.98  E-value=7.1e-06  Score=76.69  Aligned_cols=71  Identities=20%  Similarity=0.269  Sum_probs=56.9

Q ss_pred             CCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        163 GDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      +.+|+|||||+|++++.+.+.|. .|.++|+++.|++..+.|..  .  .   .   ++|+.++....            
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~--~--~---~---~~Di~~~~~~~------------   68 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG--E--K---P---EGDITQVNEKT------------   68 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS--C--C---C---BSCGGGSCGGG------------
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC--C--C---C---cCCHHHcCHhh------------
Confidence            56899999999999999999998 78899999999999998863  2  1   1   68887754321            


Q ss_pred             CCCCCCCcccEEEECChhh
Q psy16898        242 GNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~npP~~  260 (324)
                           ...+|+|+.+||..
T Consensus        69 -----~~~~D~l~~gpPCQ   82 (327)
T 2c7p_A           69 -----IPDHDILCAGFPCQ   82 (327)
T ss_dssp             -----SCCCSEEEEECCCT
T ss_pred             -----CCCCCEEEECCCCC
Confidence                 12389999999983

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.98  E-value=6e-06  Score=78.08  Aligned_cols=72  Identities=17%  Similarity=0.254  Sum_probs=55.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +.+|.+||||||++|+++..++++|++|+|||..+-.     ..+.  .  .+ +|+++.+|++.+...           
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~-----~~l~--~--~~-~V~~~~~d~~~~~~~-----------  267 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMA-----QSLM--D--TG-QVTWLREDGFKFRPT-----------  267 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCC-----HHHH--T--TT-CEEEECSCTTTCCCC-----------
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcC-----hhhc--c--CC-CeEEEeCccccccCC-----------
Confidence            5689999999999999999999999999999986521     1122  2  22 799999998865322           


Q ss_pred             cCCCCCCCCcccEEEECChh
Q psy16898        240 SEGNSTGGTAVARVIMNLPA  259 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~  259 (324)
                             ...+|.|++|.-.
T Consensus       268 -------~~~~D~vvsDm~~  280 (375)
T 4auk_A          268 -------RSNISWMVCDMVE  280 (375)
T ss_dssp             -------SSCEEEEEECCSS
T ss_pred             -------CCCcCEEEEcCCC
Confidence                   2359999999633

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=97.94  E-value=1.1e-05  Score=76.44  Aligned_cols=93  Identities=12%  Similarity=0.081  Sum_probs=66.6

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .++.+|||+|||+|.++..++++  +.+++++|+ +.+++.+++        . .+++++.+|+.+-   .         
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~-~~v~~~~~d~~~~---~---------  259 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA--------F-SGVEHLGGDMFDG---V---------  259 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC--------C-TTEEEEECCTTTC---C---------
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh--------c-CCCEEEecCCCCC---C---------
Confidence            45789999999999999999984  569999999 888876642        2 2799999998751   0         


Q ss_pred             ccCCCCCCCCcccEEEEC-----Chh-hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        239 QSEGNSTGGTAVARVIMN-----LPA-TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~n-----pP~-~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                              +. .|.|++.     .|. ....++..+.. |+++        |.+.+..+..
T Consensus       260 --------p~-~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pg--------G~l~i~e~~~  303 (368)
T 3reo_A          260 --------PK-GDAIFIKWICHDWSDEHCLKLLKNCYAALPDH--------GKVIVAEYIL  303 (368)
T ss_dssp             --------CC-CSEEEEESCGGGBCHHHHHHHHHHHHHHSCTT--------CEEEEEECCC
T ss_pred             --------CC-CCEEEEechhhcCCHHHHHHHHHHHHHHcCCC--------CEEEEEEecc
Confidence                    11 3888873     232 23456666665 6664        8777766553

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.90  E-value=1.1e-05  Score=76.16  Aligned_cols=93  Identities=14%  Similarity=0.085  Sum_probs=67.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.++.+|||+|||+|.++..++++  +.+++++|+ +.+++.+++        .+ +++++.+|+.+  . .        
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~--------~~-~v~~~~~d~~~--~-~--------  265 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP--------LS-GIEHVGGDMFA--S-V--------  265 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC--------CT-TEEEEECCTTT--C-C--------
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh--------cC-CCEEEeCCccc--C-C--------
Confidence            346789999999999999999985  358999999 998877653        22 69999999875  1 0        


Q ss_pred             cccCCCCCCCCcccEEEEC-----Chhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        238 SQSEGNSTGGTAVARVIMN-----LPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~n-----pP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                               + .||+|++.     .|.. ...++..+.. |+++        |.+.+..+.
T Consensus       266 ---------~-~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pg--------G~l~i~e~~  308 (372)
T 1fp1_D          266 ---------P-QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPN--------GKVIIVEFI  308 (372)
T ss_dssp             ---------C-CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEEE
T ss_pred             ---------C-CCCEEEEecccccCCHHHHHHHHHHHHHhcCCC--------CEEEEEEec
Confidence                     1 28999885     2332 2367777766 7775        776665443

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.88  E-value=8.5e-06  Score=73.59  Aligned_cols=109  Identities=10%  Similarity=0.017  Sum_probs=72.6

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc--------------CCEEEEEeCCH---HHHH-----------HHHHHHHHhCC----
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR--------------GAIVAANDLNP---DSYA-----------WLQASIRLNER----  209 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~--------------g~~V~avD~~~---~a~~-----------~a~~N~~~n~~----  209 (324)
                      ++.+|||+|+|+|..++.+++.              ..+++++|..|   +.+.           .++++++.-..    
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4469999999999988776542              13899999887   3333           66666653100    


Q ss_pred             ----CCC---CCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECC--hhh-----hHHHHHHHhc-cchh
Q psy16898        210 ----QVK---TPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNL--PAT-----AVEYVRYLKV-LTRE  274 (324)
Q Consensus       210 ----~l~---~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~np--P~~-----a~~~l~~~~~-l~~~  274 (324)
                          .+.   .+++++.+|+.+.+.......             ...||.|++|+  |..     ..++++.+.. ++++
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~-------------~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pG  206 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSL-------------NQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPG  206 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGG-------------TTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhccccc-------------CCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCC
Confidence                011   268899999999876531100             02499999997  432     3467777766 7775


Q ss_pred             hcCCCCCCCEEEEEEcc
Q psy16898        275 EFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       275 ~~~~~~~~g~vh~y~f~  291 (324)
                              |++..|+-.
T Consensus       207 --------G~l~tysaa  215 (257)
T 2qy6_A          207 --------GTLATFTSA  215 (257)
T ss_dssp             --------EEEEESCCB
T ss_pred             --------cEEEEEeCC
Confidence                    888877754

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.85  E-value=3.5e-05  Score=71.82  Aligned_cols=105  Identities=15%  Similarity=0.116  Sum_probs=78.1

Q ss_pred             cCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccH
Q psy16898        146 NSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDA  222 (324)
Q Consensus       146 ~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~  222 (324)
                      .|-+..|....+. +.+|++++|..||.|+.+..++++   ..+|+|+|.++.|++.++ ++   .   .+++++++++.
T Consensus        42 ~pVLl~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---~---~~Rv~lv~~nF  113 (347)
T 3tka_A           42 TTVLLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---D---DPRFSIIHGPF  113 (347)
T ss_dssp             CCTTTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---C---CTTEEEEESCG
T ss_pred             ccccHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---c---CCcEEEEeCCH
Confidence            3445555433322 468999999999999999999985   359999999999999884 33   2   24799999999


Q ss_pred             HHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc
Q psy16898        223 RDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV  270 (324)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~  270 (324)
                      .++........+            ...+|.|++|+..++.++=+.-++
T Consensus       114 ~~l~~~L~~~g~------------~~~vDgILfDLGVSS~QlD~~eRG  149 (347)
T 3tka_A          114 SALGEYVAERDL------------IGKIDGILLDLGVSSPQLDDAERG  149 (347)
T ss_dssp             GGHHHHHHHTTC------------TTCEEEEEEECSCCHHHHHCGGGC
T ss_pred             HHHHHHHHhcCC------------CCcccEEEECCccCHHHhcCCCCC
Confidence            887654432110            014999999999988888777787

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.84  E-value=4.4e-05  Score=72.00  Aligned_cols=58  Identities=22%  Similarity=0.284  Sum_probs=50.2

Q ss_pred             CCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHH
Q psy16898        163 GDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFL  226 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~  226 (324)
                      ++.|||+|.|.|.++..++.+  +++|+++|+++..+..+++.. .    . ++++++++|+.++-
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~----~-~~l~ii~~D~l~~~  118 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E----G-SPLQILKRDPYDWS  118 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T----T-SSCEEECSCTTCHH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c----C-CCEEEEECCccchh
Confidence            589999999999999999985  569999999999999998876 2    2 27999999997763

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.80  E-value=2.6e-05  Score=73.72  Aligned_cols=94  Identities=14%  Similarity=0.086  Sum_probs=67.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.++.+|||+|||+|.++..+++  .+.+++++|+ |.+++.+++        . .+++++.+|+.+  ..         
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~-~~v~~~~~D~~~--~~---------  257 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ--------F-PGVTHVGGDMFK--EV---------  257 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC--------C-TTEEEEECCTTT--CC---------
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh--------c-CCeEEEeCCcCC--CC---------
Confidence            34678999999999999999998  4569999999 888776542        2 279999999875  11         


Q ss_pred             cccCCCCCCCCcccEEEE-----CChh-hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        238 SQSEGNSTGGTAVARVIM-----NLPA-TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~-----npP~-~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                               +. -|.|++     +.|. ....++..+.. |+++        |.+.+..+..
T Consensus       258 ---------p~-~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pg--------G~l~i~e~~~  301 (364)
T 3p9c_A          258 ---------PS-GDTILMKWILHDWSDQHCATLLKNCYDALPAH--------GKVVLVQCIL  301 (364)
T ss_dssp             ---------CC-CSEEEEESCGGGSCHHHHHHHHHHHHHHSCTT--------CEEEEEECCB
T ss_pred             ---------CC-CCEEEehHHhccCCHHHHHHHHHHHHHHcCCC--------CEEEEEEecc
Confidence                     11 288887     3333 24456666665 6664        8887776654

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=97.79  E-value=2.5e-05  Score=73.38  Aligned_cols=93  Identities=11%  Similarity=0.079  Sum_probs=67.1

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .++.+|||+|||+|.++..++++  +.+++++|+ +.+++.+++        .+ +++++.+|+.+  . .         
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~-~v~~~~~d~~~--~-~---------  249 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG--------NE-NLNFVGGDMFK--S-I---------  249 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC--------CS-SEEEEECCTTT--C-C---------
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc--------CC-CcEEEeCccCC--C-C---------
Confidence            46789999999999999999985  459999999 788876542        33 59999999875  1 0         


Q ss_pred             ccCCCCCCCCcccEEEECC-----hh-hhHHHHHHHhc-cch---hhcCCCCCCCEEEEEEccc
Q psy16898        239 QSEGNSTGGTAVARVIMNL-----PA-TAVEYVRYLKV-LTR---EEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~np-----P~-~a~~~l~~~~~-l~~---~~~~~~~~~g~vh~y~f~~  292 (324)
                               ..||+|++.-     |. ....++..+.. |++   +        |.+.+..+..
T Consensus       250 ---------~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~g--------G~l~i~e~~~  296 (358)
T 1zg3_A          250 ---------PSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKD--------GKVIIIDISI  296 (358)
T ss_dssp             ---------CCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGG--------CEEEEEECEE
T ss_pred             ---------CCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCC--------cEEEEEEecc
Confidence                     1399999852     22 13366776666 776   5        7777665543

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=97.77  E-value=5.8e-05  Score=69.46  Aligned_cols=78  Identities=19%  Similarity=0.112  Sum_probs=59.7

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCE---EEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAI---VAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~---V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      ..+-+|+|||||.|++++.+.+.|.+   |.++|+++.|.+..+.|..        ...++++|+.++......+     
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~--------~~~~~~~DI~~i~~~~i~~-----   80 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ--------GKIMYVGDVRSVTQKHIQE-----   80 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT--------TCEEEECCGGGCCHHHHHH-----
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC--------CCceeCCChHHccHHHhcc-----
Confidence            34568999999999999999998873   6999999999988776531        2467889998875543321     


Q ss_pred             cccCCCCCCCCcccEEEECChhh
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                               ...+|+++..||..
T Consensus        81 ---------~~~~Dll~ggpPCQ   94 (295)
T 2qrv_A           81 ---------WGPFDLVIGGSPCN   94 (295)
T ss_dssp             ---------TCCCSEEEECCCCG
T ss_pred             ---------cCCcCEEEecCCCc
Confidence                     12489999999884

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.75  E-value=1.2e-05  Score=74.90  Aligned_cols=62  Identities=18%  Similarity=0.199  Sum_probs=50.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      ..+|+.|||.|||+|+.++.+.+.|.+.+|+|+++.+++.++++++..+  ..  ...++.|+.++
T Consensus       250 ~~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~--~~--~~~~~~~~~~i  311 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNN--IS--EEKITDIYNRI  311 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSC--SC--HHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhcc--cc--hHHHHHHHHHH
Confidence            4589999999999999999999999999999999999999999887555  32  44444555443

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.65  E-value=4.7e-06  Score=75.52  Aligned_cols=122  Identities=12%  Similarity=0.052  Sum_probs=68.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-CC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-GA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.++.+|||||||+|.++..++++ ++ .|.|+|+.-+.......   ...  ...++..+..++...  .         
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~---~~~--~g~~ii~~~~~~dv~--~---------  135 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN---VQS--LGWNIITFKDKTDIH--R---------  135 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC---CCB--TTGGGEEEECSCCTT--T---------
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc---cCc--CCCCeEEEeccceeh--h---------
Confidence            568889999999999999998875 55 78888887432100000   000  001344445543110  0         


Q ss_pred             cccCCCCCCCCcccEEEECC-hhhhHHHHHHHhc--cchhhcCCCCCC-CEEEEEEccc--CCChhHHhHhhh
Q psy16898        238 SQSEGNSTGGTAVARVIMNL-PATAVEYVRYLKV--LTREEFGKLSRP-PVLYLYCFLP--KMDLETKKKIKS  304 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~np-P~~a~~~l~~~~~--l~~~~~~~~~~~-g~vh~y~f~~--~~~~~~~~~v~~  304 (324)
                             -.+..||.|++|. |.......+.++.  |-......++++ |.+.+-.|.+  .+..+..+.++.
T Consensus       136 -------l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~  201 (277)
T 3evf_A          136 -------LEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQR  201 (277)
T ss_dssp             -------SCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHH
T ss_pred             -------cCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHH
Confidence                   0134599999996 4433334444432  111111234567 9999999994  444445544443

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=97.60  E-value=7.1e-05  Score=70.04  Aligned_cols=72  Identities=18%  Similarity=0.328  Sum_probs=55.9

Q ss_pred             EEEEEcCCCchhHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        165 LVLDVFAGVGPFSIPAARRGA---IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       165 ~VLDl~~G~G~~al~~a~~g~---~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      +++|||||.|++++.+.+.|.   .|.|+|+++.|.+..+.|..        ...++++|+.++.......         
T Consensus         5 ~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~--------~~~~~~~DI~~~~~~~~~~---------   67 (333)
T 4h0n_A            5 KILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP--------ETNLLNRNIQQLTPQVIKK---------   67 (333)
T ss_dssp             EEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT--------TSCEECCCGGGCCHHHHHH---------
T ss_pred             EEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC--------CCceeccccccCCHHHhcc---------
Confidence            799999999999999988774   57899999999988877652        2346788988765443321         


Q ss_pred             CCCCCCCcccEEEECChh
Q psy16898        242 GNSTGGTAVARVIMNLPA  259 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~npP~  259 (324)
                            ..+|+++..||.
T Consensus        68 ------~~~D~l~ggpPC   79 (333)
T 4h0n_A           68 ------WNVDTILMSPPC   79 (333)
T ss_dssp             ------TTCCEEEECCCC
T ss_pred             ------CCCCEEEecCCC
Confidence                  138999999997

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=97.58  E-value=5e-05  Score=70.40  Aligned_cols=70  Identities=14%  Similarity=0.275  Sum_probs=55.3

Q ss_pred             EEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCC
Q psy16898        165 LVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGN  243 (324)
Q Consensus       165 ~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~  243 (324)
                      +|+|||||.|++++-+-+.|. -|.|+|+++.|.+..+.|.   +      -.++++|+.++....              
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~---~------~~~~~~DI~~i~~~~--------------   58 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH---S------AKLIKGDISKISSDE--------------   58 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC---C------SEEEESCGGGCCGGG--------------
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC---C------CCcccCChhhCCHhh--------------
Confidence            699999999999999988888 6789999999988877653   1      357889988753321              


Q ss_pred             CCCCCcccEEEECChhh
Q psy16898        244 STGGTAVARVIMNLPAT  260 (324)
Q Consensus       244 ~~~~~~fD~Vi~npP~~  260 (324)
                         ...+|+++.-||..
T Consensus        59 ---~~~~D~l~ggpPCQ   72 (331)
T 3ubt_Y           59 ---FPKCDGIIGGPPSQ   72 (331)
T ss_dssp             ---SCCCSEEECCCCGG
T ss_pred             ---CCcccEEEecCCCC
Confidence               12489999999973

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=97.58  E-value=0.00011  Score=68.58  Aligned_cols=74  Identities=15%  Similarity=0.199  Sum_probs=56.0

Q ss_pred             CCEEEEEcCCCchhHHHHHhcC--C-EE-EEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        163 GDLVLDVFAGVGPFSIPAARRG--A-IV-AANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~~g--~-~V-~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .-+++|||||.|++++.+.+.|  . .| .|+|+++.|.+..+.|..  .     .  ++++|+.++..+....      
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~--~-----~--~~~~DI~~~~~~~i~~------   74 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK--E-----E--VQVKNLDSISIKQIES------   74 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC--C-----C--CBCCCTTTCCHHHHHH------
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC--C-----C--cccCChhhcCHHHhcc------
Confidence            4489999999999999999987  3 56 799999999999888763  1     1  4567877654432221      


Q ss_pred             ccCCCCCCCCcccEEEECChhh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                               ..+|++++.||..
T Consensus        75 ---------~~~Dil~ggpPCQ   87 (327)
T 3qv2_A           75 ---------LNCNTWFMSPPCQ   87 (327)
T ss_dssp             ---------TCCCEEEECCCCT
T ss_pred             ---------CCCCEEEecCCcc
Confidence                     1389999999963

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.56  E-value=2.1e-06  Score=77.92  Aligned_cols=36  Identities=31%  Similarity=0.346  Sum_probs=31.3

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh-cCC-EEEEEeCCHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR-RGA-IVAANDLNPD  195 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~-~g~-~V~avD~~~~  195 (324)
                      +.++.+|||||||.|.|+..+++ .++ .|+|+|+...
T Consensus        88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d  125 (282)
T 3gcz_A           88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQ  125 (282)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccC
Confidence            67888999999999999999986 455 8999999865

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=97.56  E-value=0.00012  Score=71.86  Aligned_cols=59  Identities=20%  Similarity=0.237  Sum_probs=48.2

Q ss_pred             CCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHH
Q psy16898        163 GDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFL  226 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~  226 (324)
                      .-+++|||||+|++++.+.+.|. .|.++|+++.|.+..+.|....    + ...++++|+.++.
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~----p-~~~~~~~DI~~i~  147 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD----P-ATHHFNEDIRDIT  147 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC----T-TTCEEESCTHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC----C-Ccceeccchhhhh
Confidence            34899999999999999998887 5899999999999888775311    2 3457789999876

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.48  E-value=3.6e-05  Score=68.95  Aligned_cols=111  Identities=15%  Similarity=0.068  Sum_probs=64.0

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhc--C----CEEEEEe--CCHHHHHHHHHHHHHhCCCCCCCeEEEec-cHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARR--G----AIVAAND--LNPDSYAWLQASIRLNERQVKTPISATQK-DARDFLQTD  229 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~--g----~~V~avD--~~~~a~~~a~~N~~~n~~~l~~~v~~~~~-D~~~~~~~~  229 (324)
                      .+++|.+|+||||+.|+++..++++  .    ..|+|+|  +.|-...       -.+  +. -+++..+ |+++..   
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~-------~~G--v~-~i~~~~G~Df~~~~---  136 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQ-------SYG--WN-IVTMKSGVDVFYKP---  136 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCC-------STT--GG-GEEEECSCCGGGSC---
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCccc-------CCC--ce-EEEeeccCCccCCC---
Confidence            4789999999999999999999986  2    2455666  2221000       001  11 2355557 988611   


Q ss_pred             HHHhhhhhcccCCCCCCCCcccEEEECC-hhhhHHHHHHHhccchhh--cCCCCCCC-EEEEEEcccCCChhHHh
Q psy16898        230 ARAHLVRWSQSEGNSTGGTAVARVIMNL-PATAVEYVRYLKVLTREE--FGKLSRPP-VLYLYCFLPKMDLETKK  300 (324)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~fD~Vi~np-P~~a~~~l~~~~~l~~~~--~~~~~~~g-~vh~y~f~~~~~~~~~~  300 (324)
                                       +..+|+|++|. |.+.....+..+.+.-..  ...++++| .+.|-.|.+ ..+++.+
T Consensus       137 -----------------~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg-~~~~~~~  193 (269)
T 2px2_A          137 -----------------SEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP-YMPKVIE  193 (269)
T ss_dssp             -----------------CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT-TSHHHHH
T ss_pred             -----------------CCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC-CchHHHH
Confidence                             23599999996 443333333333211100  11234567 999999994 3344433

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.48  E-value=0.00022  Score=63.11  Aligned_cols=110  Identities=12%  Similarity=0.048  Sum_probs=67.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh-cCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEec-cHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR-RGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQK-DARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~-~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~-D~~~~~~~~~~~~~~~  236 (324)
                      +.++.+|+||||++|+++..++. .|+ +|+|+|+-+.--+.-+ ..+..|  - +.++|..+ |++...          
T Consensus        76 l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~g--w-n~v~fk~gvDv~~~~----------  141 (267)
T 3p8z_A           76 VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYG--W-NIVKLMSGKDVFYLP----------  141 (267)
T ss_dssp             SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTT--T-TSEEEECSCCGGGCC----------
T ss_pred             CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcC--c-CceEEEeccceeecC----------
Confidence            67889999999999999998887 566 8999999763211000 000011  1 36899999 984321          


Q ss_pred             hcccCCCCCCCCcccEEEECC-hhhhHHHHHHHhccchhhc--CCCCCCCEEEEEEcccCC
Q psy16898        237 WSQSEGNSTGGTAVARVIMNL-PATAVEYVRYLKVLTREEF--GKLSRPPVLYLYCFLPKM  294 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~np-P~~a~~~l~~~~~l~~~~~--~~~~~~g~vh~y~f~~~~  294 (324)
                                ...+|.|++|. |.++....++.+.++-..+  .-++. +-+.|--|++..
T Consensus       142 ----------~~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~  191 (267)
T 3p8z_A          142 ----------PEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM  191 (267)
T ss_dssp             ----------CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred             ----------CccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence                      23499999997 3333334444433322210  11223 677788888876

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.45  E-value=0.00028  Score=67.73  Aligned_cols=59  Identities=15%  Similarity=0.101  Sum_probs=48.4

Q ss_pred             cCCCEEEEEcCCCchhHHHHH-hc-C--CEEEEEeCCHHHHHHHHHHHHH--hCCCCCCCeEEEec
Q psy16898        161 REGDLVLDVFAGVGPFSIPAA-RR-G--AIVAANDLNPDSYAWLQASIRL--NERQVKTPISATQK  220 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a-~~-g--~~V~avD~~~~a~~~a~~N~~~--n~~~l~~~v~~~~~  220 (324)
                      .++.+|+|+||++|.+++.++ +. +  ++|+|+|.+|.+++.+++|++.  |+. .+.++++++.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~-~~~~v~~~~~  289 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTN-FASRITVHGC  289 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTST-TGGGEEEECS
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccC-CCCCEEEEEe
Confidence            588999999999999999988 42 2  5999999999999999999998  530 4136776654

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=97.39  E-value=0.00018  Score=66.91  Aligned_cols=54  Identities=26%  Similarity=0.364  Sum_probs=44.5

Q ss_pred             HHHhh-ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCH---HHHHHHHHHHHHhC
Q psy16898        155 RVTKE-VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNP---DSYAWLQASIRLNE  208 (324)
Q Consensus       155 ~~~~~-~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~---~a~~~a~~N~~~n~  208 (324)
                      +++.. -.+|+.|||.|||+|+.++.+.+.|.+.+|+|+++   ..++.++++++..+
T Consensus       234 ~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          234 RLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             HHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             HHHHHhCCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            34443 45899999999999999999999999999999999   99999999887554

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.27  E-value=1.9e-05  Score=72.15  Aligned_cols=120  Identities=13%  Similarity=0.055  Sum_probs=69.0

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhc-CC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCe-EEEec-cHHHHHHHHHHHhh
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARR-GA-IVAANDLNPDSYAWLQASIRLNERQVKTPI-SATQK-DARDFLQTDARAHL  234 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~-g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v-~~~~~-D~~~~~~~~~~~~~  234 (324)
                      .+.+|.+||||||++|+|+..++++ ++ .|+|+|+...+......   ...  ...++ .+..+ |+..+         
T Consensus        78 l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~---~~~--~~~~iv~~~~~~di~~l---------  143 (300)
T 3eld_A           78 YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH---MQT--LGWNIVKFKDKSNVFTM---------  143 (300)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC---CCB--TTGGGEEEECSCCTTTS---------
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc---ccc--cCCceEEeecCceeeec---------
Confidence            4668999999999999999999974 55 89999997532100000   000  01112 22211 32211         


Q ss_pred             hhhcccCCCCCCCCcccEEEECC-hhhhHHHHHHHhc--cchhhcCCCCCC-CEEEEEEcc--cCCChhHHhHhh
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNL-PATAVEYVRYLKV--LTREEFGKLSRP-PVLYLYCFL--PKMDLETKKKIK  303 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~np-P~~a~~~l~~~~~--l~~~~~~~~~~~-g~vh~y~f~--~~~~~~~~~~v~  303 (324)
                                 .+..+|.|++|. |......++.++.  |-......+++| |.|.|-.|.  ..+..+..+.++
T Consensus       144 -----------~~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk  207 (300)
T 3eld_A          144 -----------PTEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQ  207 (300)
T ss_dssp             -----------CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHH
T ss_pred             -----------CCCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHH
Confidence                       124599999996 4433444555433  211112235677 999999999  444445555443

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.17  E-value=0.0014  Score=59.74  Aligned_cols=103  Identities=12%  Similarity=-0.057  Sum_probs=76.7

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc-------CCEEEEEeCCH--------------------------HHHHHHHHHHHHhC
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR-------GAIVAANDLNP--------------------------DSYAWLQASIRLNE  208 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~-------g~~V~avD~~~--------------------------~a~~~a~~N~~~n~  208 (324)
                      ..+.||++|+..|.-++.+|..       +.+|+++|..+                          ..++.+++|++..+
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            3569999999999999888751       56899999642                          14678999999998


Q ss_pred             CCCC-CCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh--hHHHHHHHhc-cchhhcCCCCCCCE
Q psy16898        209 RQVK-TPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT--AVEYVRYLKV-LTREEFGKLSRPPV  284 (324)
Q Consensus       209 ~~l~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~--a~~~l~~~~~-l~~~~~~~~~~~g~  284 (324)
                        +. ++++++.||+.+.+....                ...||.|.+|--..  ...+++.+.. ++++        |+
T Consensus       186 --l~~~~I~li~Gda~etL~~~~----------------~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pG--------Gi  239 (282)
T 2wk1_A          186 --LLDEQVRFLPGWFKDTLPTAP----------------IDTLAVLRMDGDLYESTWDTLTNLYPKVSVG--------GY  239 (282)
T ss_dssp             --CCSTTEEEEESCHHHHSTTCC----------------CCCEEEEEECCCSHHHHHHHHHHHGGGEEEE--------EE
T ss_pred             --CCcCceEEEEeCHHHHHhhCC----------------CCCEEEEEEcCCccccHHHHHHHHHhhcCCC--------EE
Confidence              83 699999999988766421                23599999996431  2456666655 5554        88


Q ss_pred             EEEEEc
Q psy16898        285 LYLYCF  290 (324)
Q Consensus       285 vh~y~f  290 (324)
                      |.+..+
T Consensus       240 Iv~DD~  245 (282)
T 2wk1_A          240 VIVDDY  245 (282)
T ss_dssp             EEESSC
T ss_pred             EEEcCC
Confidence            877766

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.01  E-value=0.00035  Score=58.23  Aligned_cols=78  Identities=14%  Similarity=0.137  Sum_probs=55.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +++|.+|||++||.              +++|+|+.|++.|+++..       .++++.++|+.++.....         
T Consensus        10 ~~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~-------~~~~~~~~d~~~~~~~~~---------   59 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTG-------NEGRVSVENIKQLLQSAH---------   59 (176)
T ss_dssp             CCTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTT-------TTSEEEEEEGGGGGGGCC---------
T ss_pred             CCCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhcc-------cCcEEEEechhcCccccC---------
Confidence            67899999999996              239999999999987642       147899999886532100         


Q ss_pred             cCCCCCCCCcccEEEECC------hhhhHHHHHHHhc-cchh
Q psy16898        240 SEGNSTGGTAVARVIMNL------PATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~np------P~~a~~~l~~~~~-l~~~  274 (324)
                            ....||.|+++.      |. ...++..+.. |+++
T Consensus        60 ------~~~~fD~V~~~~~l~~~~~~-~~~~l~~~~r~Lkpg   94 (176)
T 2ld4_A           60 ------KESSFDIILSGLVPGSTTLH-SAEILAEIARILRPG   94 (176)
T ss_dssp             ------CSSCEEEEEECCSTTCCCCC-CHHHHHHHHHHEEEE
T ss_pred             ------CCCCEeEEEECChhhhcccC-HHHHHHHHHHHCCCC
Confidence                  024599999952      33 3456666655 8876

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=96.77  E-value=0.0055  Score=64.91  Aligned_cols=86  Identities=15%  Similarity=0.087  Sum_probs=59.5

Q ss_pred             CEEEEEcCCCchhHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        164 DLVLDVFAGVGPFSIPAARRGA--IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~~g~--~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      -+++|||||.|++++-+.+.|.  .|.|+|+++.|.+..+.|    .   + ...++++|+.++........+...... 
T Consensus       541 l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N----~---p-~~~~~~~DI~~l~~~~~~~di~~~~~~-  611 (1002)
T 3swr_A          541 LRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLN----N---P-GSTVFTEDCNILLKLVMAGETTNSRGQ-  611 (1002)
T ss_dssp             EEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHH----C---T-TSEEECSCHHHHHHHHHHTCSBCTTCC-
T ss_pred             CeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHh----C---C-CCccccccHHHHhhhccchhhhhhhhh-
Confidence            3899999999999999998886  578999999998887665    2   2 367889999887654322211110000 


Q ss_pred             CCCCCCCcccEEEECChh
Q psy16898        242 GNSTGGTAVARVIMNLPA  259 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~npP~  259 (324)
                       .-.....+|+|+.-||.
T Consensus       612 -~lp~~~~vDll~GGpPC  628 (1002)
T 3swr_A          612 -RLPQKGDVEMLCGGPPC  628 (1002)
T ss_dssp             -BCCCTTTCSEEEECCCC
T ss_pred             -hcccCCCeeEEEEcCCC
Confidence             00012358999999996

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=96.63  E-value=0.0033  Score=65.08  Aligned_cols=58  Identities=21%  Similarity=0.226  Sum_probs=45.7

Q ss_pred             CEEEEEcCCCchhHHHHHhcC------C-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHH
Q psy16898        164 DLVLDVFAGVGPFSIPAARRG------A-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTD  229 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~~g------~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~  229 (324)
                      .+|+|||||.|++++-+.+.|      . -+.|+|+++.|++..+.|    .   + ...+++.|+.++....
T Consensus       213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~N----h---p-~~~~~~~di~~i~~~~  277 (784)
T 4ft4_B          213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYN----H---P-QTEVRNEKADEFLALL  277 (784)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHH----C---T-TSEEEESCHHHHHHHH
T ss_pred             CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHH----C---C-CCceecCcHHHhhhhh
Confidence            479999999999998887755      3 678999999998887654    3   2 4678889998876543

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=96.17  E-value=0.013  Score=63.65  Aligned_cols=86  Identities=16%  Similarity=0.108  Sum_probs=59.3

Q ss_pred             CCEEEEEcCCCchhHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        163 GDLVLDVFAGVGPFSIPAARRGA--IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~~g~--~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .-+++|||||.|++++-+.+.|.  .|.|+|+++.|.+..+.|.       + ...++++|+.++........+...   
T Consensus       851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~-------p-~~~~~~~DI~~l~~~~~~gdi~~~---  919 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN-------P-GTTVFTEDCNVLLKLVMAGEVTNS---  919 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC-------T-TSEEECSCHHHHHHHHTTTCSBCS---
T ss_pred             CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-------C-CCcEeeccHHHHhHhhhccchhhh---
Confidence            34899999999999999999886  5789999999998877653       1 356889999887644221110000   


Q ss_pred             CCC-CCCCCcccEEEECChh
Q psy16898        241 EGN-STGGTAVARVIMNLPA  259 (324)
Q Consensus       241 ~~~-~~~~~~fD~Vi~npP~  259 (324)
                      .+. -.....+|+|+.-||.
T Consensus       920 ~~~~lp~~~~vDvl~GGpPC  939 (1330)
T 3av4_A          920 LGQRLPQKGDVEMLCGGPPC  939 (1330)
T ss_dssp             SCCBCCCTTTCSEEEECCCC
T ss_pred             hhhhccccCccceEEecCCC
Confidence            000 0012358999999987

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.03  E-value=0.014  Score=53.30  Aligned_cols=101  Identities=14%  Similarity=0.080  Sum_probs=63.7

Q ss_pred             ccCCCEEEEEcC------CCchhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898        160 VREGDLVLDVFA------GVGPFSIPAAR-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA  232 (324)
Q Consensus       160 ~~~g~~VLDl~~------G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~  232 (324)
                      ++.|.+|||+||      -.|++.+.-.. .|+.|+++|+++-           ..  .. . .++.+|+.....     
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~-----------~s--da-~-~~IqGD~~~~~~-----  166 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-----------VS--DA-D-STLIGDCATVHT-----  166 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-----------BC--SS-S-EEEESCGGGEEE-----
T ss_pred             ecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccc-----------cc--CC-C-eEEEcccccccc-----
Confidence            346899999997      66775333222 3569999999983           11  22 2 459999754211     


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECC-hhhh----------HHHH----HHHhc-cchhhcCCCCCCCEEEEEEcccCCCh
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNL-PATA----------VEYV----RYLKV-LTREEFGKLSRPPVLYLYCFLPKMDL  296 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~np-P~~a----------~~~l----~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~  296 (324)
                                    +..||+|++|. |...          ..+.    +-++. |++        ||.|.+-.|....++
T Consensus       167 --------------~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~Lkp--------GGsFvVKVFQGsg~~  224 (344)
T 3r24_A          167 --------------ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLAL--------GGSIAVKITEHSWNA  224 (344)
T ss_dssp             --------------SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEE--------EEEEEEEECSSSCCH
T ss_pred             --------------CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcC--------CCEEEEEEecCCCHH
Confidence                          24599999995 3311          1122    22333 554        599999999998866


Q ss_pred             hHHhHh
Q psy16898        297 ETKKKI  302 (324)
Q Consensus       297 ~~~~~v  302 (324)
                      ...+..
T Consensus       225 ~L~~lr  230 (344)
T 3r24_A          225 DLYKLM  230 (344)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555544

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=95.75  E-value=0.0061  Score=55.59  Aligned_cols=36  Identities=17%  Similarity=0.117  Sum_probs=31.3

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh-cCC-EEEEEeCCHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR-RGA-IVAANDLNPD  195 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~-~g~-~V~avD~~~~  195 (324)
                      +.++.+||||||++|+++..++. .|+ +|+|+|+-..
T Consensus        92 l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~  129 (321)
T 3lkz_A           92 LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGP  129 (321)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCST
T ss_pred             CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCC
Confidence            66888999999999999998877 566 8999999764

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=94.93  E-value=0.019  Score=54.87  Aligned_cols=42  Identities=17%  Similarity=0.067  Sum_probs=36.7

Q ss_pred             CEEEEEcCCCchhHHHHHhcC--C-E----EEEEeCCHHHHHHHHHHHH
Q psy16898        164 DLVLDVFAGVGPFSIPAARRG--A-I----VAANDLNPDSYAWLQASIR  205 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~~g--~-~----V~avD~~~~a~~~a~~N~~  205 (324)
                      -+|+|||||+|++++.+.+.|  . -    |.++|+++.|.+..+.|..
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~   59 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS   59 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence            389999999999999998866  2 4    8899999999999888875

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=93.28  E-value=0.71  Score=40.97  Aligned_cols=60  Identities=20%  Similarity=0.162  Sum_probs=47.0

Q ss_pred             CCCEEEEEcCCCch---hHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGP---FSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~---~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=-|++.|.   ++..+|+.|++|+.+|.+++.++.+.+.++..+  -  ++.++.+|+.+.
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g--~--~~~~~~~Dvt~~   68 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG--K--EVLGVKADVSKK   68 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--C--CEEEEECCTTSH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--C--cEEEEEccCCCH
Confidence            57888888876652   445555689999999999999998888887666  3  688999998653

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=92.61  E-value=0.37  Score=44.17  Aligned_cols=44  Identities=27%  Similarity=0.348  Sum_probs=36.1

Q ss_pred             hccCCCEEEEEcCC-CchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAG-VGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G-~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||-.||| +|.+++.+|+ .|++|+++|.+++..+.+++
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  208 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR  208 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            35689999999886 4777777777 68899999999998887754

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=91.44  E-value=0.31  Score=44.74  Aligned_cols=43  Identities=16%  Similarity=0.123  Sum_probs=36.4

Q ss_pred             ccCCCEEEEEcCC--CchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        160 VREGDLVLDVFAG--VGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       160 ~~~g~~VLDl~~G--~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      +++|++||-.|||  +|..++.+|+ .|++|++++.+++.++.+++
T Consensus       142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  187 (340)
T 3gms_A          142 LQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR  187 (340)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            5689999999886  7778887777 68999999999988888764

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=91.19  E-value=0.36  Score=40.40  Aligned_cols=43  Identities=26%  Similarity=0.261  Sum_probs=32.1

Q ss_pred             hccCCCEEEEEcC--CCchhHHHHHh-cCCEEEEEeCCHHHHHHHH
Q psy16898        159 EVREGDLVLDVFA--GVGPFSIPAAR-RGAIVAANDLNPDSYAWLQ  201 (324)
Q Consensus       159 ~~~~g~~VLDl~~--G~G~~al~~a~-~g~~V~avD~~~~a~~~a~  201 (324)
                      .+.+|++||..|+  |+|...+.+++ .|++|+++|.+++..+.++
T Consensus        35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A           35 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS   80 (198)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred             CCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            3568999999884  45555555554 6889999999998776654

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=90.64  E-value=0.18  Score=51.16  Aligned_cols=132  Identities=14%  Similarity=0.072  Sum_probs=66.0

Q ss_pred             EeCCeEEEEeccceeecCcCh-HHHHHH-Hh------hc----cCCCEEEEEcCCCchhHHHHHhc------------C-
Q psy16898        130 KENGCTFKMDFSKVYWNSRLS-TEHERV-TK------EV----REGDLVLDVFAGVGPFSIPAARR------------G-  184 (324)
Q Consensus       130 ~e~g~~f~id~~~~f~~~r~~-~e~~~~-~~------~~----~~g~~VLDl~~G~G~~al~~a~~------------g-  184 (324)
                      +++|.-|.-.+..+|++..-. .|-+.+ +.      ..    .+.-+|+|+|.|+|...+.+.+.            . 
T Consensus        14 ~~~~~~~s~~f~d~y~s~~~~~~e~~~~f~~~~~l~~~~~~~~~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~   93 (689)
T 3pvc_A           14 NEQGTPVSEQFGDIYFSNEDGLEETHHVFLKGNGFPARFASHPQQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLR   93 (689)
T ss_dssp             ---------------CCSTTSHHHHHHHTTTTTTTTHHHHHCCSSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCC
T ss_pred             CCCCcccCcccCCcccCCcCHHHhhHhhccccCCHHHHHhhCCCCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCc
Confidence            455666777777777765432 232221 11      11    13349999999999988877552            1 


Q ss_pred             -CEEEEEeCCHHHHHHHHHHHH--------------Hh-----CC-C--CCC---CeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        185 -AIVAANDLNPDSYAWLQASIR--------------LN-----ER-Q--VKT---PISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       185 -~~V~avD~~~~a~~~a~~N~~--------------~n-----~~-~--l~~---~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                       .+++++|..|-..+.+++-+.              .-     +. +  +.+   .++++.+|+.+.+.+....      
T Consensus        94 ~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~------  167 (689)
T 3pvc_A           94 RLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGCHRILLADGAITLDLWFGDVNTLLPTLDDS------  167 (689)
T ss_dssp             EEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEEEEEEETTTTEEEEEEESCHHHHGGGCCGG------
T ss_pred             eEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCceEEEecCCcEEEEEEccCHHHHHhhcccc------
Confidence             379999995544444433211              00     00 0  111   4778999999988763110      


Q ss_pred             ccCCCCCCCCcccEEEECChhh-------hHHHHHHHhc-cchh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPAT-------AVEYVRYLKV-LTRE  274 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~-------a~~~l~~~~~-l~~~  274 (324)
                             ....+|.+.+|+..-       ..+++..+.. ++++
T Consensus       168 -------~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g  204 (689)
T 3pvc_A          168 -------LNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPG  204 (689)
T ss_dssp             -------GTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEE
T ss_pred             -------cCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCC
Confidence                   013499999997442       2456666665 5544

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=90.40  E-value=0.28  Score=46.22  Aligned_cols=43  Identities=35%  Similarity=0.417  Sum_probs=35.5

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQ  201 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~  201 (324)
                      .+++|++||-.|||. |.+++.+|+ .|+ +|+++|.+++.++.++
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~  227 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS  227 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence            366899999999865 777777777 688 9999999999888764

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=90.10  E-value=1.3  Score=39.35  Aligned_cols=60  Identities=20%  Similarity=0.133  Sum_probs=44.8

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=-|++.|   .++..+++.|++|+.+|.+++.++.+.+.+...+  .  ++.++.+|+.+.
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g--~--~~~~~~~Dv~~~   70 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG--Y--DAHGVAFDVTDE   70 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--C--CEEECCCCTTCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--C--cEEEEEeeCCCH
Confidence            5777777776654   2344455579999999999999888887777666  3  588899998653

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=89.98  E-value=2.4  Score=36.52  Aligned_cols=59  Identities=20%  Similarity=0.179  Sum_probs=44.3

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.|+ +|.++..++    +.|++|+.++.+++.++.+.+.+...+    .++.++.+|+.+.
T Consensus         8 ~~k~vlITGa-s~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~   70 (253)
T 3qiv_A            8 ENKVGIVTGS-GGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG----GTAISVAVDVSDP   70 (253)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CEEEEEECCTTSH
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC----CcEEEEEccCCCH
Confidence            4677887775 455555555    479999999999999888877776554    2688999998664

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=89.91  E-value=3.1  Score=36.35  Aligned_cols=60  Identities=12%  Similarity=0.040  Sum_probs=44.6

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=.|++.|   .++..+++.|++|+.++.+++.++.+.+.+...+    .++.++.+|+.+.
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~   72 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG----RRALSVGTDITDD   72 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCH
Confidence            5778887776544   2334455579999999999998888887776655    2688999998654

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=89.89  E-value=1.5  Score=40.37  Aligned_cols=45  Identities=29%  Similarity=0.382  Sum_probs=35.3

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-cCCE-EEEEeCCHHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-RGAI-VAANDLNPDSYAWLQAS  203 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~g~~-V~avD~~~~a~~~a~~N  203 (324)
                      .+++|++||-.|+|. |.+++.+|+ .|++ |+++|.+++..+.+++-
T Consensus       176 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          176 GVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            367899999988753 566666666 6885 99999999999998764

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=89.86  E-value=0.46  Score=43.76  Aligned_cols=44  Identities=23%  Similarity=0.212  Sum_probs=34.0

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||-.|+|. |.+++.+|+ .|+ +|+++|.+++.++.+++
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  209 (352)
T 3fpc_A          163 NIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE  209 (352)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence            367899999998753 555666666 588 89999999998887754

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=89.39  E-value=2.9  Score=36.42  Aligned_cols=61  Identities=21%  Similarity=0.174  Sum_probs=44.1

Q ss_pred             CCCEEEEEcC-CCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFA-GVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~-G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.|+ |.|   .++..++++|++|+.++.++..++.+.+.++..+  - .++.++.+|+.+.
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~-~~~~~~~~Dl~~~   85 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLG--L-GRVEAVVCDVTST   85 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC--S-SCEEEEECCTTCH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC--C-CceEEEEeCCCCH
Confidence            5678887776 433   2445556689999999999998888777775443  2 3799999998653

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=89.34  E-value=2.9  Score=37.42  Aligned_cols=59  Identities=17%  Similarity=0.226  Sum_probs=44.9

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|++||=.|++ |.++..++    ++|++|+.++.++..++.+.+.+...+  .  ++.++.+|+.+.
T Consensus        30 ~gk~vlVTGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~--~~~~~~~Dv~d~   92 (301)
T 3tjr_A           30 DGRAAVVTGGA-SGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG--F--DAHGVVCDVRHL   92 (301)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--C--CEEEEECCTTCH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--C--ceEEEEccCCCH
Confidence            56788877766 55555544    479999999999999888887777655  3  588999998664

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=89.21  E-value=2.1  Score=39.09  Aligned_cols=44  Identities=27%  Similarity=0.260  Sum_probs=34.7

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-c-CCEEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-R-GAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~-g~~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||-.|+|. |.+++.+|+ . |++|+++|.+++..+.+++
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~  214 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE  214 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            467899999998753 666667776 3 6699999999998888754

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=88.94  E-value=3.6  Score=35.62  Aligned_cols=57  Identities=19%  Similarity=0.077  Sum_probs=41.1

Q ss_pred             CCCEEEEEcCCCchhHHHH----HhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccH
Q psy16898        162 EGDLVLDVFAGVGPFSIPA----ARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDA  222 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~----a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~  222 (324)
                      .|+++|=.|++ |.++..+    ++.|++|+.++.+++.++.+.+.+...+  -. ++.++..|+
T Consensus        11 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~-~~~~~~~D~   71 (252)
T 3f1l_A           11 NDRIILVTGAS-DGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET--GR-QPQWFILDL   71 (252)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--SC-CCEEEECCT
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc--CC-CceEEEEec
Confidence            56788877755 5555554    4579999999999998887777665543  22 577888887

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=88.90  E-value=1.1  Score=35.26  Aligned_cols=69  Identities=13%  Similarity=0.057  Sum_probs=46.1

Q ss_pred             EEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH--HHHHHHHhhhhhc
Q psy16898        165 LVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF--LQTDARAHLVRWS  238 (324)
Q Consensus       165 ~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~--~~~~~~~~~~~~~  238 (324)
                      +|+=+|  .|.+|..+++    .|..|+++|.+++.++.+++    .+      +.++.+|+.+.  +....        
T Consensus         9 ~viIiG--~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~g------~~~i~gd~~~~~~l~~a~--------   68 (140)
T 3fwz_A            9 HALLVG--YGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----RG------VRAVLGNAANEEIMQLAH--------   68 (140)
T ss_dssp             CEEEEC--CSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT------CEEEESCTTSHHHHHHTT--------
T ss_pred             CEEEEC--cCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----cC------CCEEECCCCCHHHHHhcC--------
Confidence            455555  4777766665    58899999999998877653    34      56788887643  22210        


Q ss_pred             ccCCCCCCCCcccEEEECChhhh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                              ...+|.||.-.|...
T Consensus        69 --------i~~ad~vi~~~~~~~   83 (140)
T 3fwz_A           69 --------LECAKWLILTIPNGY   83 (140)
T ss_dssp             --------GGGCSEEEECCSCHH
T ss_pred             --------cccCCEEEEECCChH
Confidence                    134899998777643

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=88.85  E-value=0.62  Score=42.35  Aligned_cols=43  Identities=28%  Similarity=0.403  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEc--CCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        160 VREGDLVLDVF--AGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       160 ~~~g~~VLDl~--~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      +++|++||-.|  +|+|..++.+++ .|++|++++.+++.++.+++
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  183 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKA  183 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            56899999877  346666666666 68899999999998888763

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=88.71  E-value=3.3  Score=35.55  Aligned_cols=59  Identities=14%  Similarity=0.112  Sum_probs=43.6

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.| |+|.++..++    ++|++|+.++.++...+.+.+.++..+  .  ++.++.+|+.+.
T Consensus         4 ~~k~vlITG-as~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~--~~~~~~~D~~~~   66 (247)
T 3lyl_A            4 NEKVALVTG-ASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG--F--KARGLVLNISDI   66 (247)
T ss_dssp             TTCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--C--CEEEEECCTTCH
T ss_pred             CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--C--ceEEEEecCCCH
Confidence            356677666 4566665555    479999999999998888877776655  3  588999998653

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=88.61  E-value=1.8  Score=37.94  Aligned_cols=61  Identities=11%  Similarity=-0.049  Sum_probs=44.8

Q ss_pred             CCCEEEEEcCC----Cc-hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAG----VG-PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G----~G-~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=-|++    .| .++..+++.|++|+.++.+++..+.+.+-++..+  - .++.++..|+.+.
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~--~-~~~~~~~~Dv~~~   70 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLN--Q-PEAHLYQIDVQSD   70 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGT--C-SSCEEEECCTTCH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--C-CcEEEEEccCCCH
Confidence            57889988853    33 3456666789999999999988888777665443  2 2688889998653

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=88.51  E-value=4.3  Score=35.35  Aligned_cols=61  Identities=16%  Similarity=0.115  Sum_probs=42.6

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.|+ +|.++..++    +.|++|+.++.+++.++.+.+.+....  ...++.++.+|+.+.
T Consensus        12 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~   76 (267)
T 1iy8_A           12 TDRVVLITGG-GSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA--PDAEVLTTVADVSDE   76 (267)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHC--TTCCEEEEECCTTSH
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc--CCceEEEEEccCCCH
Confidence            4677887775 566665554    479999999999988877766665431  113588889998653

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=88.47  E-value=3.9  Score=35.83  Aligned_cols=59  Identities=27%  Similarity=0.182  Sum_probs=42.0

Q ss_pred             CCCEEEEEcCCCchhHHH----HHhcCCEEEEEeCC------------HHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIP----AARRGAIVAANDLN------------PDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~----~a~~g~~V~avD~~------------~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=.|++ |.++..    +++.|++|+.+|.+            ++.++.+.+.+...+    .++.++.+|+.+.
T Consensus        12 ~gk~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~   86 (278)
T 3sx2_A           12 TGKVAFITGAA-RGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG----SRIVARQADVRDR   86 (278)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT----CCEEEEECCTTCH
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC----CeEEEEeCCCCCH
Confidence            57788877754 455544    45579999999987            777776666665555    2689999998653

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=88.38  E-value=0.79  Score=41.78  Aligned_cols=43  Identities=28%  Similarity=0.311  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcC--CCchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        160 VREGDLVLDVFA--GVGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       160 ~~~g~~VLDl~~--G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      +++|++||-.|+  |+|..++.+++ .|++|++++.+++.++.+++
T Consensus       146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  191 (334)
T 3qwb_A          146 VKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE  191 (334)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            568999999884  56666666666 68899999999998887654

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=88.37  E-value=4.4  Score=34.63  Aligned_cols=57  Identities=21%  Similarity=0.115  Sum_probs=41.3

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDA  222 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~  222 (324)
                      +|+++|=.|+ +|.++..+++    +|++|+.++.++..++.+.+.+...+  -. ++.++..|+
T Consensus        13 ~~k~vlITGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~-~~~~~~~d~   73 (247)
T 3i1j_A           13 KGRVILVTGA-ARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAG--QP-QPLIIALNL   73 (247)
T ss_dssp             TTCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--SC-CCEEEECCT
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--CC-CceEEEecc
Confidence            5677776665 4666655554    79999999999999888887777655  33 566777665

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=88.28  E-value=2.4  Score=37.52  Aligned_cols=60  Identities=8%  Similarity=-0.017  Sum_probs=43.3

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .+++||=.|++ |++|..+++    +|++|+.++.++...+.+.+.+...+  - .++.++.+|+.+.
T Consensus        11 ~~k~vlITGas-~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~-~~~~~~~~Dl~~~   74 (311)
T 3o26_A           11 KRRCAVVTGGN-KGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN--H-ENVVFHQLDVTDP   74 (311)
T ss_dssp             -CCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--C-CSEEEEECCTTSC
T ss_pred             CCcEEEEecCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--C-CceEEEEccCCCc
Confidence            46677766654 666665554    79999999999988877777766443  2 3689999998653

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=88.24  E-value=0.65  Score=43.51  Aligned_cols=44  Identities=39%  Similarity=0.434  Sum_probs=35.1

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||-.|||. |.+++.+|+ .|+ +|+++|.+++.++.+++
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence            356899999998754 666777777 688 89999999998888753

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=88.19  E-value=0.61  Score=43.29  Aligned_cols=44  Identities=25%  Similarity=0.262  Sum_probs=35.5

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||-.|||. |.+++.+|+ .|+ +|+++|.+++.++.+++
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~  233 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ  233 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            367899999999864 666777776 588 89999999998888753

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=88.17  E-value=3.3  Score=35.97  Aligned_cols=59  Identities=19%  Similarity=0.163  Sum_probs=43.7

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=.|++ |.++..++    +.|++|+.++.+++..+.+.+.+...+    .++.++.+|+.+.
T Consensus        11 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~   73 (256)
T 3gaf_A           11 NDAVAIVTGAA-AGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG----GKAIGLECNVTDE   73 (256)
T ss_dssp             TTCEEEECSCS-SHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTT----CCEEEEECCTTCH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEECCCCCH
Confidence            46677766654 55655554    479999999999998888877776555    3688999998654

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=88.16  E-value=3.3  Score=36.52  Aligned_cols=59  Identities=10%  Similarity=0.076  Sum_probs=42.5

Q ss_pred             CCCEEEEEcCCCchhHHHH----HhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPA----ARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~----a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.|++ |.++..+    ++.|++|+.++.++..++.+.+.+...+    .++.++.+|+.+.
T Consensus        23 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~   85 (279)
T 3sju_A           23 RPQTAFVTGVS-SGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG----HDVDGSSCDVTST   85 (279)
T ss_dssp             --CEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT----CCEEEEECCTTCH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEECCCCCH
Confidence            57788877755 4555544    4579999999999998888777776544    3688999998653

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=88.16  E-value=4  Score=35.78  Aligned_cols=61  Identities=16%  Similarity=0.078  Sum_probs=44.5

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.| |+|.++..+++    +|++|++++.++..++.+.+.+...+  ...++.++.+|+.+.
T Consensus        31 ~~k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~   95 (279)
T 1xg5_A           31 RDRLALVTG-ASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG--YPGTLIPYRCDLSNE   95 (279)
T ss_dssp             TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CSSEEEEEECCTTCH
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcC--CCceEEEEEecCCCH
Confidence            466777666 55677766654    68999999999988877776666555  444688888998653

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=88.08  E-value=3.8  Score=35.52  Aligned_cols=61  Identities=13%  Similarity=-0.002  Sum_probs=43.8

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCC-CCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVK-TPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~-~~v~~~~~D~~~~  225 (324)
                      .++++|=.|++ |.++..++    +.|++|+.++.++..++.+.+.+....  -. .++.++.+|+.+.
T Consensus         6 ~~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~   71 (250)
T 3nyw_A            6 QKGLAIITGAS-QGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSN--KHVQEPIVLPLDITDC   71 (250)
T ss_dssp             CCCEEEEESTT-SHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHC--TTSCCCEEEECCTTCH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc--cccCcceEEeccCCCH
Confidence            46677777765 55555544    479999999999998888877776542  11 3688899998653

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=87.98  E-value=3.3  Score=36.05  Aligned_cols=59  Identities=15%  Similarity=0.072  Sum_probs=44.6

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .+++||=.|+ +|.+|..+++    .|++|+.++.++..++.+.+.+...+    .++.++.+|+.+.
T Consensus        28 ~~k~vlITGa-s~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~   90 (262)
T 3rkr_A           28 SGQVAVVTGA-SRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG----GEAESHACDLSHS   90 (262)
T ss_dssp             TTCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CEEEEEECCTTCH
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC----CceeEEEecCCCH
Confidence            5677776665 5667666554    69999999999999888887777655    2588999998653

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=87.81  E-value=3.6  Score=37.18  Aligned_cols=61  Identities=18%  Similarity=0.150  Sum_probs=45.6

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|++||=.|++ |.++..++    ++|++|++++.++..++.+.+.+...+  ...++.++.+|+.+.
T Consensus         7 ~~k~vlVTGas-~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dl~~~   71 (319)
T 3ioy_A            7 AGRTAFVTGGA-NGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEG--SGPEVMGVQLDVASR   71 (319)
T ss_dssp             TTCEEEEETTT-STHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEECCTTCH
T ss_pred             CCCEEEEcCCc-hHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCCeEEEEECCCCCH
Confidence            46678877765 55665554    479999999999999888888777665  333688999998653

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=87.77  E-value=0.75  Score=42.44  Aligned_cols=43  Identities=30%  Similarity=0.308  Sum_probs=34.6

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQ  201 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~  201 (324)
                      .+.+|++||-.|||. |.+++.+|+ .|+ +|+++|.+++.++.++
T Consensus       168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~  213 (356)
T 1pl8_A          168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK  213 (356)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            367899999999763 666667776 688 9999999998888775

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=87.66  E-value=4.9  Score=35.76  Aligned_cols=59  Identities=15%  Similarity=-0.009  Sum_probs=42.0

Q ss_pred             CCCEEEEEcCCCc-----hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVG-----PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G-----~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=.|++.|     .++..+++.|++|+.++.++...+.+++-....+     ++.++.+|+.+.
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~Dv~d~   93 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG-----AFVAGHCDVADA   93 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT-----CEEEEECCTTCH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-----CceEEECCCCCH
Confidence            5788998887643     3445556689999999999876666555554444     578889998653

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=87.66  E-value=3.6  Score=35.88  Aligned_cols=60  Identities=20%  Similarity=0.087  Sum_probs=43.2

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=.|+ +|.++..++    +.|++|+.++.+++.++.+.+.+...+  - .++.++.+|+.+.
T Consensus         9 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~-~~~~~~~~Dv~~~   72 (262)
T 3pk0_A            9 QGRSVVVTGG-TKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG--S-GKVIGVQTDVSDR   72 (262)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTS--S-SCEEEEECCTTSH
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC--C-CcEEEEEcCCCCH
Confidence            4667776664 566665555    479999999999998887777665443  2 3689999998653

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=87.63  E-value=1.7  Score=40.78  Aligned_cols=43  Identities=21%  Similarity=0.234  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898        160 VREGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQA  202 (324)
Q Consensus       160 ~~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~~  202 (324)
                      +++|++||=.|+|. |.+++.+|+ .|+ +|+++|.+++.++.+++
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~  256 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE  256 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            56899999988742 455555565 688 99999999998888753

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=87.37  E-value=2.8  Score=37.09  Aligned_cols=59  Identities=19%  Similarity=0.054  Sum_probs=43.7

Q ss_pred             CCCEEEEEcCCCchhHHHH----HhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPA----ARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~----a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=.|++ |.++..+    ++.|++|+.++.+++.++.+.+.+...+    .++.++.+|+.+.
T Consensus        31 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~d~   93 (276)
T 3r1i_A           31 SGKRALITGAS-TGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG----GKALPIRCDVTQP   93 (276)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT----CCCEEEECCTTCH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CeEEEEEcCCCCH
Confidence            57788877765 5555544    4579999999999988888777776555    2588899998653

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=87.32  E-value=2.4  Score=37.85  Aligned_cols=59  Identities=15%  Similarity=0.003  Sum_probs=41.3

Q ss_pred             CCCEEEEEcCCC-ch----hHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGV-GP----FSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~-G~----~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=.|++. ..    ++..+++.|++|+.++.++...+.+++-....+     .+.++.+|+.+.
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~Dv~d~   92 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG-----VKLTVPCDVSDA   92 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT-----CCEEEECCTTCH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC-----CeEEEEcCCCCH
Confidence            577888888753 24    445555689999999999876666655555444     467888888653

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=87.25  E-value=4.9  Score=35.78  Aligned_cols=59  Identities=32%  Similarity=0.297  Sum_probs=42.0

Q ss_pred             CCCEEEEEcCCCchhHHH----HHhcCCEEEEEeCC------------HHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIP----AARRGAIVAANDLN------------PDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~----~a~~g~~V~avD~~------------~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=.|++. +++..    +++.|++|+.+|.+            ++.++.+.+.+...+    .++.++.+|+.+.
T Consensus        27 ~gk~~lVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~  101 (299)
T 3t7c_A           27 EGKVAFITGAAR-GQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG----RRIIASQVDVRDF  101 (299)
T ss_dssp             TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT----CCEEEEECCTTCH
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC----CceEEEECCCCCH
Confidence            577888877664 45544    45579999999987            677766666665544    3689999998654

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=87.25  E-value=5.4  Score=34.83  Aligned_cols=59  Identities=14%  Similarity=-0.003  Sum_probs=43.6

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .+++||=.| |+|.++..+++    .|++|++++.++..++.+.+.++..+    .++.++.+|+.+.
T Consensus        30 ~~k~vlITG-asggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~   92 (272)
T 1yb1_A           30 TGEIVLITG-AGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG----AKVHTFVVDCSNR   92 (272)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCH
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC----CeEEEEEeeCCCH
Confidence            466777666 45677766665    68999999999988877766666544    2588999998653

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=87.25  E-value=5.4  Score=34.73  Aligned_cols=60  Identities=13%  Similarity=0.072  Sum_probs=43.3

Q ss_pred             CCCEEEEEcCCCchhHHHH----HhcCCEEEEEeCCHHHHHHHHHHHHH-hCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPA----ARRGAIVAANDLNPDSYAWLQASIRL-NERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~----a~~g~~V~avD~~~~a~~~a~~N~~~-n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.|++ |.++..+    ++.|++|+.++.+++.++.+.+.+.. .+   ..++.++.+|+.+.
T Consensus         7 ~~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~---~~~~~~~~~Dv~~~   71 (265)
T 3lf2_A            7 SEAVAVVTGGS-SGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFP---GARLFASVCDVLDA   71 (265)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHST---TCCEEEEECCTTCH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC---CceEEEEeCCCCCH
Confidence            46777777765 4455544    45799999999999988888777765 33   12588999998653

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=87.14  E-value=3.8  Score=36.06  Aligned_cols=59  Identities=14%  Similarity=0.110  Sum_probs=43.3

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.| |+|.++..++    +.|++|+.++.++...+.+.+.+...+  .  ++.++.+|+.+.
T Consensus        27 ~~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~--~~~~~~~Dv~d~   89 (270)
T 3ftp_A           27 DKQVAIVTG-ASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAG--L--EGRGAVLNVNDA   89 (270)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHT--C--CCEEEECCTTCH
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--C--cEEEEEEeCCCH
Confidence            466777666 4555655544    579999999999998888877777666  3  478888888653

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=86.94  E-value=2.8  Score=36.49  Aligned_cols=59  Identities=17%  Similarity=0.103  Sum_probs=42.1

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +++++|=.|+ +|.++..++    +.|++|+.++.+++.++.+.+.+...+    .++.++.+|+.+.
T Consensus         5 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~   67 (257)
T 3imf_A            5 KEKVVIITGG-SSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFP----GQILTVQMDVRNT   67 (257)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCST----TCEEEEECCTTCH
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCH
Confidence            4567776664 456665554    479999999999998887766654333    3688999998653

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=86.79  E-value=5.9  Score=34.10  Aligned_cols=59  Identities=19%  Similarity=0.153  Sum_probs=42.6

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.|++ |.++..++    +.|++|+.++.+++.++.+.+.+...+    .++.++.+|+.+.
T Consensus         6 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~~~   68 (247)
T 2jah_A            6 QGKVALITGAS-SGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAG----AKVHVLELDVADR   68 (247)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEECCCCCH
Confidence            46677777754 66665555    479999999999988877766665444    2588889998653

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=86.74  E-value=4.1  Score=36.07  Aligned_cols=59  Identities=19%  Similarity=0.053  Sum_probs=42.7

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +++++|=.|++ |.++..++    +.|++|+.++.++..++.+.+.+...+    .++.++.+|+.+.
T Consensus        27 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~   89 (283)
T 3v8b_A           27 PSPVALITGAG-SGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAG----GQAIALEADVSDE   89 (283)
T ss_dssp             CCCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTT----CCEEEEECCTTCH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCH
Confidence            56778877755 55555544    579999999999988887776665433    3688999998654

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=86.72  E-value=5.7  Score=34.74  Aligned_cols=59  Identities=15%  Similarity=0.069  Sum_probs=41.8

Q ss_pred             CCCEEEEEcCCCchhHHHH----HhcCCEEEEEeCC------------HHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPA----ARRGAIVAANDLN------------PDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~----a~~g~~V~avD~~------------~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=.|++ |.++..+    ++.|++|+.+|.+            ...++.+...+...+    .++.++.+|+.+.
T Consensus         9 ~gk~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~   83 (287)
T 3pxx_A            9 QDKVVLVTGGA-RGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG----RKAYTAEVDVRDR   83 (287)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT----SCEEEEECCTTCH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC----CceEEEEccCCCH
Confidence            46778877765 4555554    4579999999987            777777666665544    3688999998653

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=86.70  E-value=2.3  Score=33.20  Aligned_cols=71  Identities=15%  Similarity=0.099  Sum_probs=47.3

Q ss_pred             CCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH--HHHHHHHhhhh
Q psy16898        163 GDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF--LQTDARAHLVR  236 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~--~~~~~~~~~~~  236 (324)
                      ..+|+=+||  |.+|..+++    .|..|+++|.+++.++.+++    .+      +.++.+|+.+.  +...       
T Consensus         6 ~~~v~I~G~--G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~~------~~~~~gd~~~~~~l~~~-------   66 (141)
T 3llv_A            6 RYEYIVIGS--EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED----EG------FDAVIADPTDESFYRSL-------   66 (141)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT------CEEEECCTTCHHHHHHS-------
T ss_pred             CCEEEEECC--CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----CC------CcEEECCCCCHHHHHhC-------
Confidence            345777776  667766665    58899999999988776543    23      56778887653  2211       


Q ss_pred             hcccCCCCCCCCcccEEEECChhhh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                               ....+|.|+.-.|...
T Consensus        67 ---------~~~~~d~vi~~~~~~~   82 (141)
T 3llv_A           67 ---------DLEGVSAVLITGSDDE   82 (141)
T ss_dssp             ---------CCTTCSEEEECCSCHH
T ss_pred             ---------CcccCCEEEEecCCHH
Confidence                     0134899999888643

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=86.59  E-value=4.3  Score=35.66  Aligned_cols=59  Identities=19%  Similarity=0.066  Sum_probs=42.7

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.|++ |+++..++    +.|++|+.++.+++.++.+.+.+...+    .++.++.+|+.+.
T Consensus         3 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~   65 (264)
T 3tfo_A            3 MDKVILITGAS-GGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG----GTALAQVLDVTDR   65 (264)
T ss_dssp             TTCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT----CEEEEEECCTTCH
T ss_pred             CCCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEEcCCCCH
Confidence            35667766655 55555544    479999999999998888877776655    2588888888653

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=86.37  E-value=4.4  Score=35.36  Aligned_cols=60  Identities=17%  Similarity=0.078  Sum_probs=43.1

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      .|+++|=.|+ +|.++..++    +.|++|+.++.++..++.+.+.+...+  ....+.++.+|+.+
T Consensus         9 ~~k~~lVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~D~~~   72 (267)
T 3t4x_A            9 KGKTALVTGS-TAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQY--PDAILQPVVADLGT   72 (267)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHC--TTCEEEEEECCTTS
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC--CCceEEEEecCCCC
Confidence            4667776665 456665554    479999999999998887777776554  23357888888865

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=86.33  E-value=0.7  Score=43.00  Aligned_cols=44  Identities=27%  Similarity=0.145  Sum_probs=35.2

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||-.|+|. |.+++.+|+ .|++|++++.+++.++.+++
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            367899999998863 666666676 68899999999998888764

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=86.25  E-value=1.8  Score=39.29  Aligned_cols=43  Identities=33%  Similarity=0.373  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEcC--CCchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        160 VREGDLVLDVFA--GVGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       160 ~~~g~~VLDl~~--G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      +.+|++||-.|+  |+|..++.+++ .|++|++++.+++.++.+++
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~  188 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK  188 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            568999999884  67777766666 68899999999988887754

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=86.15  E-value=6.2  Score=34.65  Aligned_cols=59  Identities=15%  Similarity=0.123  Sum_probs=42.6

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.|+ +|.++..+++    .|++|++++.++..++.+.+.+...+    .++.++.+|+.+.
T Consensus        21 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~~~   83 (277)
T 2rhc_B           21 DSEVALVTGA-TSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG----VEADGRTCDVRSV   83 (277)
T ss_dssp             TSCEEEEETC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCH
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CceEEEECCCCCH
Confidence            4677887775 5666665554    79999999999988877666665444    2588888998653

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=86.14  E-value=0.6  Score=42.92  Aligned_cols=44  Identities=23%  Similarity=0.083  Sum_probs=34.6

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||-.|+|. |.+++.+|+ .|++|++++.+++..+.+++
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  218 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS  218 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh
Confidence            467899999998753 556666666 68899999999998887754

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=86.13  E-value=5.7  Score=34.94  Aligned_cols=59  Identities=25%  Similarity=0.317  Sum_probs=41.1

Q ss_pred             CCCEEEEEcCCCchhHH----HHHhcCCEEEEEeCC----------------HHHHHHHHHHHHHhCCCCCCCeEEEecc
Q psy16898        162 EGDLVLDVFAGVGPFSI----PAARRGAIVAANDLN----------------PDSYAWLQASIRLNERQVKTPISATQKD  221 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al----~~a~~g~~V~avD~~----------------~~a~~~a~~N~~~n~~~l~~~v~~~~~D  221 (324)
                      .|+++|=.|++.| ++.    .+++.|++|+.+|.+                ++.++.+.+.+...+    .++.++.+|
T Consensus        10 ~~k~~lVTGas~g-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D   84 (286)
T 3uve_A           10 EGKVAFVTGAARG-QGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN----RRIVTAEVD   84 (286)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT----CCEEEEECC
T ss_pred             CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC----CceEEEEcC
Confidence            5678887777644 444    445579999999987                666666655555433    368899999


Q ss_pred             HHHH
Q psy16898        222 ARDF  225 (324)
Q Consensus       222 ~~~~  225 (324)
                      +.+.
T Consensus        85 v~~~   88 (286)
T 3uve_A           85 VRDY   88 (286)
T ss_dssp             TTCH
T ss_pred             CCCH
Confidence            8653

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=86.04  E-value=1.1  Score=40.59  Aligned_cols=43  Identities=16%  Similarity=0.089  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEc--CCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        160 VREGDLVLDVF--AGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       160 ~~~g~~VLDl~--~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      +++|++||-.|  +|+|..++.+++ .|++|++++.+++.++.+++
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~  183 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK  183 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            56899999988  355555555555 68899999999988887764

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=86.04  E-value=5.8  Score=33.86  Aligned_cols=58  Identities=19%  Similarity=0.127  Sum_probs=42.6

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      .++++|=.| |+|.++..+++    .|++|++++.++...+.+.+.+...+    .++.++.+|+.+
T Consensus        10 ~~~~vlVtG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~   71 (255)
T 1fmc_A           10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG----GQAFACRCDITS   71 (255)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTC
T ss_pred             CCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhC----CceEEEEcCCCC
Confidence            456776555 66777777665    68899999999988777666665444    258888899865

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=86.03  E-value=5.7  Score=34.89  Aligned_cols=61  Identities=18%  Similarity=0.090  Sum_probs=44.0

Q ss_pred             CCCEEEEEcCCCchhHHHH----HhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCC-CCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPA----ARRGAIVAANDLNPDSYAWLQASIRLNERQVK-TPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~----a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~-~~v~~~~~D~~~~  225 (324)
                      .++++|=.|++ |.++..+    ++.|++|+.++.+++.++.+.+.++..+  -. .++.++.+|+.+.
T Consensus        10 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~~Dv~~~   75 (281)
T 3svt_A           10 QDRTYLVTGGG-SGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALG--ANGGAIRYEPTDITNE   75 (281)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC--CSSCEEEEEECCTTSH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCH
Confidence            56778877754 5555544    4579999999999998888777776544  21 2688999998653

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=86.02  E-value=1.1  Score=41.26  Aligned_cols=43  Identities=33%  Similarity=0.366  Sum_probs=34.1

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-cCCEEEEEeCCHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-RGAIVAANDLNPDSYAWLQ  201 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~g~~V~avD~~~~a~~~a~  201 (324)
                      .+++|++||-.|+|. |.+++.+|+ .|++|+++|.+++.++.++
T Consensus       165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~  209 (352)
T 1e3j_A          165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK  209 (352)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence            367899999998753 555666666 6889999999999888875

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=85.95  E-value=4.7  Score=35.96  Aligned_cols=57  Identities=18%  Similarity=0.077  Sum_probs=41.2

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=-|++.|   .++..+++.|++|+.+|.+++.++.+.+.+   +    .++..+.+|+.+.
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g----~~~~~~~~Dv~~~   87 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G----GGAVGIQADSANL   87 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C----TTCEEEECCTTCH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C----CCeEEEEecCCCH
Confidence            6888888887665   244555567999999999999887665433   3    2577888887653

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=85.91  E-value=6.7  Score=34.33  Aligned_cols=59  Identities=27%  Similarity=0.277  Sum_probs=41.7

Q ss_pred             CCCEEEEEcCCCchhHHH----HHhcCCEEEEEeC-------------CHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIP----AARRGAIVAANDL-------------NPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~----~a~~g~~V~avD~-------------~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      .|+++|=.|++ |.++..    +++.|++|+.+|.             ++..++.+.+.+...+    .++.++.+|+.+
T Consensus        10 ~~k~~lVTGas-~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~   84 (277)
T 3tsc_A           10 EGRVAFITGAA-RGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN----RRIVAAVVDTRD   84 (277)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT----CCEEEEECCTTC
T ss_pred             CCCEEEEECCc-cHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC----CeEEEEECCCCC
Confidence            56788877765 445544    4457999999998             6777776666665544    268899999865


Q ss_pred             H
Q psy16898        225 F  225 (324)
Q Consensus       225 ~  225 (324)
                      .
T Consensus        85 ~   85 (277)
T 3tsc_A           85 F   85 (277)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=85.75  E-value=4.1  Score=36.99  Aligned_cols=43  Identities=35%  Similarity=0.396  Sum_probs=32.3

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-c-CCEEEEEeCCHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-R-GAIVAANDLNPDSYAWLQ  201 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~-g~~V~avD~~~~a~~~a~  201 (324)
                      .+++|++||=.|+|. |.+++.+++ . |++|+++|.+++-++.++
T Consensus       160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~  205 (348)
T 4eez_A          160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAK  205 (348)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhh
Confidence            356899999999875 445555555 3 669999999998776654

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=85.65  E-value=1.9  Score=39.62  Aligned_cols=43  Identities=30%  Similarity=0.266  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEc--CCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        160 VREGDLVLDVF--AGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       160 ~~~g~~VLDl~--~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      +++|++||-.|  +|+|..++.+|+ .|++|++++.+++.++.+++
T Consensus       165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  210 (353)
T 4dup_A          165 LTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER  210 (353)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            56899999774  345666666666 68899999999998888764

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=85.59  E-value=6.3  Score=34.58  Aligned_cols=59  Identities=19%  Similarity=0.119  Sum_probs=41.9

Q ss_pred             CCCEEEEEcCCCchhHHH----HHhcCCEEEEEeC-------------CHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIP----AARRGAIVAANDL-------------NPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~----~a~~g~~V~avD~-------------~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      .|+++|=.|++ |.++..    +++.|++|+.+|.             +++.++.+.+.+...+    .++.++.+|+.+
T Consensus        14 ~gk~~lVTGas-~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~   88 (280)
T 3pgx_A           14 QGRVAFITGAA-RGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQG----RKALTRVLDVRD   88 (280)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT----CCEEEEECCTTC
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC----CeEEEEEcCCCC
Confidence            56778877765 455544    4457999999998             6777777766665544    368899999865


Q ss_pred             H
Q psy16898        225 F  225 (324)
Q Consensus       225 ~  225 (324)
                      .
T Consensus        89 ~   89 (280)
T 3pgx_A           89 D   89 (280)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=85.51  E-value=3.5  Score=36.30  Aligned_cols=59  Identities=19%  Similarity=0.067  Sum_probs=43.6

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=.|+ +|.++..++    +.|++|+.++.+++.++.+.+.+...+    .++.++.+|+.+.
T Consensus        25 ~gk~~lVTGa-s~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~   87 (271)
T 4ibo_A           25 GGRTALVTGS-SRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVG----HDAEAVAFDVTSE   87 (271)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT----CCEEECCCCTTCH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CceEEEEcCCCCH
Confidence            5677776664 555655554    479999999999998888877776555    2588999998654

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=85.47  E-value=5.7  Score=35.75  Aligned_cols=59  Identities=25%  Similarity=0.227  Sum_probs=40.7

Q ss_pred             CCCEEEEEcCCCchhHHHH----HhcCCEEEEEeCC------------HHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPA----ARRGAIVAANDLN------------PDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~----a~~g~~V~avD~~------------~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=.|++ |.++..+    ++.|++|+.+|.+            ++.++.+.+.+...+    .++.++.+|+.+.
T Consensus        45 ~gk~~lVTGas-~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~  119 (317)
T 3oec_A           45 QGKVAFITGAA-RGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG----RRIIARQADVRDL  119 (317)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT----CCEEEEECCTTCH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcC----CeEEEEECCCCCH
Confidence            46777776655 5555444    4579999999986            666666666555544    2688999998653

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=85.32  E-value=5.6  Score=35.01  Aligned_cols=59  Identities=12%  Similarity=-0.008  Sum_probs=43.0

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      .|++||=.| |+|.+|..+++    +|++|++++.++..++.+.+.+...+  -. ++.++.+|+.+
T Consensus        27 ~~k~vlITG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~-~~~~~~~Dl~d   89 (286)
T 1xu9_A           27 QGKKVIVTG-ASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG--AA-SAHYIAGTMED   89 (286)
T ss_dssp             TTCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT--CS-EEEEEECCTTC
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC--CC-ceEEEeCCCCC
Confidence            467788666 55677766554    68999999999988877766665444  22 58889999865

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=85.32  E-value=5  Score=35.25  Aligned_cols=61  Identities=13%  Similarity=0.073  Sum_probs=41.9

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCC-CCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQV-KTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l-~~~v~~~~~D~~~~  225 (324)
                      .++++|=.| |+|.++..++    ++|++|+.++.+++.++.+.+.+...+  . ..++.++.+|+.+.
T Consensus         5 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~   70 (280)
T 1xkq_A            5 SNKTVIITG-SSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSG--VSEKQVNSVVADVTTE   70 (280)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--CCGGGEEEEECCTTSH
T ss_pred             CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCcceEEEEecCCCH
Confidence            456676666 4566665555    479999999999988877766665433  2 11588899998653

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=85.26  E-value=7.6  Score=33.47  Aligned_cols=58  Identities=19%  Similarity=0.090  Sum_probs=40.4

Q ss_pred             CCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        163 GDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      ++++|=.| |+|.++..++    +.|++|+.++.++...+.+.+.+...+    .++.++.+|+.+.
T Consensus         2 ~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~   63 (256)
T 1geg_A            2 KKVALVTG-AGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG----GHAVAVKVDVSDR   63 (256)
T ss_dssp             CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTSH
T ss_pred             CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEecCCCH
Confidence            34566666 4566666555    479999999999988777666665444    2588888998653

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=85.21  E-value=7.9  Score=33.49  Aligned_cols=59  Identities=12%  Similarity=0.069  Sum_probs=41.5

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHh-CCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLN-ERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n-~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.|+ +|.++..+++    .|++|++++.++..++.+.+.+... +    .++.++.+|+.+.
T Consensus         6 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~D~~~~   69 (263)
T 3ai3_A            6 SGKVAVITGS-SSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFG----VRVLEVAVDVATP   69 (263)
T ss_dssp             TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC----CCEEEEECCTTSH
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcC----CceEEEEcCCCCH
Confidence            4667776665 4666665554    7999999999998877666655443 4    2588889998653

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=85.21  E-value=4.4  Score=35.82  Aligned_cols=60  Identities=20%  Similarity=0.076  Sum_probs=41.5

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=.|+ +|.++..+++    .|++|+.++.++..++.+.+.+...+  -. .+.++.+|+.+.
T Consensus        32 ~gk~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~-~~~~~~~Dv~d~   95 (281)
T 4dry_A           32 EGRIALVTGG-GTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT--GN-IVRAVVCDVGDP   95 (281)
T ss_dssp             --CEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--SS-CEEEEECCTTCH
T ss_pred             CCCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CC-eEEEEEcCCCCH
Confidence            5677776665 4666655554    69999999999998887777665443  22 458889998654

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=85.11  E-value=7  Score=33.89  Aligned_cols=59  Identities=22%  Similarity=0.224  Sum_probs=42.0

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.|+ +|.++..+++    .|++|+.++.+++.++.+.+.+...+    .++.++.+|+.+.
T Consensus         6 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~   68 (262)
T 1zem_A            6 NGKVCLVTGA-GGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG----VEARSYVCDVTSE   68 (262)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT----SCEEEEECCTTCH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEecCCCH
Confidence            4667776665 5566665554    79999999999988877666665434    2588889998653

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=85.00  E-value=3  Score=36.99  Aligned_cols=59  Identities=27%  Similarity=0.210  Sum_probs=42.2

Q ss_pred             CCCEEEEEcCCCchhHHHH----HhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPA----ARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~----a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=.|++ |.++..+    ++.|++|+.++.++..++.+.+.+...+    .++.++.+|+.+.
T Consensus         7 ~gk~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~   69 (280)
T 3tox_A            7 EGKIAIVTGAS-SGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGG----GEAAALAGDVGDE   69 (280)
T ss_dssp             TTCEEEESSTT-SHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTT----CCEEECCCCTTCH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEECCCCCH
Confidence            46677766655 5555544    4579999999999998887776665433    3688899998653

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=84.98  E-value=1.2  Score=41.26  Aligned_cols=43  Identities=26%  Similarity=0.271  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcCCC-chhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        160 VREGDLVLDVFAGV-GPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       160 ~~~g~~VLDl~~G~-G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      +++|++||-.|||. |..++.+|+ .|++|++++.+++.++.+++
T Consensus       187 ~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  231 (363)
T 3uog_A          187 LRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFA  231 (363)
T ss_dssp             CCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHH
Confidence            56899999998653 555556666 68899999999998887654

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=84.87  E-value=2.3  Score=38.89  Aligned_cols=105  Identities=13%  Similarity=0.124  Sum_probs=60.8

Q ss_pred             CEEEEEcCCCchhHHHHHh------cCC--EEEEEeCCH--------HHHHHHHHHHHHhCCCCC-C--CeEEEeccHHH
Q psy16898        164 DLVLDVFAGVGPFSIPAAR------RGA--IVAANDLNP--------DSYAWLQASIRLNERQVK-T--PISATQKDARD  224 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~------~g~--~V~avD~~~--------~a~~~a~~N~~~n~~~l~-~--~v~~~~~D~~~  224 (324)
                      -+|||+|-|+|...+.+.+      ...  +.+++|..+        ..+..+.+.+...-.... +  ..++..+|+.+
T Consensus        98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~  177 (308)
T 3vyw_A           98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARK  177 (308)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHH
T ss_pred             cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHH
Confidence            3799999999987654432      223  567777532        111111111111100010 1  35788999998


Q ss_pred             HHHHHHHHhhhhhcccCCCCCCCCcccEEEECC--hhh-----hHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        225 FLQTDARAHLVRWSQSEGNSTGGTAVARVIMNL--PAT-----AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~np--P~~-----a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                      .+.+..                ...+|.|..|+  |..     ..+++..+.. ++++        |.+..||...
T Consensus       178 ~l~~l~----------------~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pg--------g~laTYtaag  229 (308)
T 3vyw_A          178 RIKEVE----------------NFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEK--------GYWVSYSSSL  229 (308)
T ss_dssp             HGGGCC----------------SCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEE--------EEEEESCCCH
T ss_pred             HHhhhc----------------ccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCC--------cEEEEEeCcH
Confidence            876531                12499999996  443     2467777766 6654        7777776654

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=84.82  E-value=1.6  Score=39.92  Aligned_cols=43  Identities=21%  Similarity=0.285  Sum_probs=34.4

Q ss_pred             hccCCCEEEEEcCC-CchhHHHHHh-cCCEEEEEeCCHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAG-VGPFSIPAAR-RGAIVAANDLNPDSYAWLQ  201 (324)
Q Consensus       159 ~~~~g~~VLDl~~G-~G~~al~~a~-~g~~V~avD~~~~a~~~a~  201 (324)
                      .+.+|++||-.|+| +|..++.+|+ .|++|++++.+++.++.++
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~  205 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK  205 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            46789999999985 4666666666 6889999999999888775

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=84.71  E-value=8.5  Score=32.94  Aligned_cols=59  Identities=15%  Similarity=0.202  Sum_probs=43.0

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .+++||=.| |+|.++..+++    +|++|++++.++...+.+.+.++..+    .++.++.+|+.+.
T Consensus        12 ~~k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~   74 (260)
T 3awd_A           12 DNRVAIVTG-GAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG----HDVSSVVMDVTNT   74 (260)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCH
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CceEEEEecCCCH
Confidence            467777666 55777766655    68999999999987776666665444    2588999998653

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=84.62  E-value=0.13  Score=48.26  Aligned_cols=42  Identities=21%  Similarity=0.252  Sum_probs=32.2

Q ss_pred             CEEEEEcCCCchhHHHHHhc------------C------CEEEEEeCCHHHHHHHHHHHH
Q psy16898        164 DLVLDVFAGVGPFSIPAARR------------G------AIVAANDLNPDSYAWLQASIR  205 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~~------------g------~~V~avD~~~~a~~~a~~N~~  205 (324)
                      -+|+|+||++|+.++.+...            +      ..|+.+|+-...+..+-+++.
T Consensus        53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~  112 (359)
T 1m6e_X           53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLP  112 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTT
T ss_pred             eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcc
Confidence            47999999999999876653            1      378888988887777766553

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=84.29  E-value=1.5  Score=39.99  Aligned_cols=43  Identities=40%  Similarity=0.362  Sum_probs=36.2

Q ss_pred             ccCCCEEEEEcC--CCchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        160 VREGDLVLDVFA--GVGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       160 ~~~g~~VLDl~~--G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      +++|++||-.|+  |+|..++.+++ .|++|++++.+++.++.+++
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~  209 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA  209 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence            568999999998  67888877777 68899999999998888753

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=84.28  E-value=8.7  Score=33.61  Aligned_cols=59  Identities=22%  Similarity=0.125  Sum_probs=41.0

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCC------------HHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLN------------PDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~------------~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=.|++ |.++..++    +.|++|+.+|.+            .+.++...+.+...+    .++.++.+|+.+.
T Consensus         9 ~~k~~lVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~   83 (281)
T 3s55_A            9 EGKTALITGGA-RGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTG----RRCISAKVDVKDR   83 (281)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT----CCEEEEECCTTCH
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcC----CeEEEEeCCCCCH
Confidence            46788877765 55555544    479999999987            666666555555444    3688999998653

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=84.26  E-value=0.76  Score=42.14  Aligned_cols=31  Identities=16%  Similarity=0.158  Sum_probs=24.3

Q ss_pred             CeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        214 PISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       214 ~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      ...++++|+.+.+....                ...||.|++|||+.
T Consensus        14 ~~~ii~gD~~~~l~~l~----------------~~svDlI~tDPPY~   44 (323)
T 1boo_A           14 NGSMYIGDSLELLESFP----------------EESISLVMTSPPFA   44 (323)
T ss_dssp             SEEEEESCHHHHGGGSC----------------SSCEEEEEECCCCS
T ss_pred             CceEEeCcHHHHHhhCC----------------CCCeeEEEECCCCC
Confidence            67899999998765421                24599999999994

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=83.99  E-value=3.3  Score=37.06  Aligned_cols=60  Identities=20%  Similarity=0.104  Sum_probs=42.3

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=.|+ +|.++..++    +.|++|+.++.++..++.+.+.+...+  - .++.++.+|+.+.
T Consensus        40 ~~k~vlVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~-~~~~~~~~Dv~d~  103 (293)
T 3rih_A           40 SARSVLVTGG-TKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG--A-GNVIGVRLDVSDP  103 (293)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSS--S-SCEEEEECCTTCH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC--C-CcEEEEEEeCCCH
Confidence            5677776665 455555544    479999999999988777766665433  2 3688999998754

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=83.88  E-value=7.2  Score=34.22  Aligned_cols=59  Identities=10%  Similarity=-0.004  Sum_probs=41.9

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHH-hCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRL-NERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~-n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=.|++ |.++..++    +.|++|+.++.+....+.+.+.+.. .+    .++.++.+|+.+.
T Consensus        26 ~~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~   89 (277)
T 4fc7_A           26 RDKVAFITGGG-SGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATG----RRCLPLSMDVRAP   89 (277)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHS----SCEEEEECCTTCH
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC----CcEEEEEcCCCCH
Confidence            57788877765 55555544    4799999999999877766655543 23    2688999998653

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=83.85  E-value=4.1  Score=35.27  Aligned_cols=60  Identities=15%  Similarity=-0.061  Sum_probs=41.4

Q ss_pred             cCCCEEEEEcCC-CchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        161 REGDLVLDVFAG-VGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       161 ~~g~~VLDl~~G-~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++||=.|++ +|.++..++    +.|++|+.++.+....+.+++-....+     ++.++.+|+.+.
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~   76 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG-----SELVFPCDVADD   76 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT-----CCCEEECCTTCH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC-----CcEEEECCCCCH
Confidence            367889988874 466665555    479999999998765555555444433     477888888653

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=83.75  E-value=1.5  Score=40.72  Aligned_cols=44  Identities=23%  Similarity=0.299  Sum_probs=34.5

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||-.|+|. |.+++.+|+ .|+ +|+++|.+++..+.+++
T Consensus       179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  225 (370)
T 4ej6_A          179 GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE  225 (370)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            467899999998753 555666666 688 99999999998887764

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=83.65  E-value=7.9  Score=36.03  Aligned_cols=73  Identities=18%  Similarity=0.096  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCC-CeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKT-PISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~-~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .+..||.++.+.|.+++.++..  .++.+.-|--+...++.|+..|+  ++. .+++...-.                  
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~--~~~~~~ds~~~~~~~~~n~~~~~--~~~~~~~~~~~~~------------------   95 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH--KPYSIGDSYISELATRENLRLNG--IDESSVKFLDSTA------------------   95 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG--CCEEEESCHHHHHHHHHHHHHTT--CCGGGSEEEETTS------------------
T ss_pred             CCCCEEEECCCCCHHHHhhccC--CceEEEhHHHHHHHHHHHHHHcC--CCccceEeccccc------------------
Confidence            4568999999999999998754  45666568888889999999999  863 355543211                  


Q ss_pred             CCCCCCCCcccEEEECChhh
Q psy16898        241 EGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP~~  260 (324)
                          .....+|.|++-+|..
T Consensus        96 ----~~~~~~~~v~~~lpk~  111 (375)
T 4dcm_A           96 ----DYPQQPGVVLIKVPKT  111 (375)
T ss_dssp             ----CCCSSCSEEEEECCSC
T ss_pred             ----ccccCCCEEEEEcCCC
Confidence                0124599999999984

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=83.33  E-value=7.4  Score=34.64  Aligned_cols=61  Identities=23%  Similarity=0.149  Sum_probs=42.7

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCC-CCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQV-KTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l-~~~v~~~~~D~~~~  225 (324)
                      .++++|=.| |+|.++..+++    .|++|+.++.+++.++.+.+.+...+  . ..++.++.+|+.+.
T Consensus        25 ~~k~vlVTG-as~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~~Dv~d~   90 (297)
T 1xhl_A           25 SGKSVIITG-SSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAG--VPAEKINAVVADVTEA   90 (297)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCGGGEEEEECCTTSH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEEecCCCCH
Confidence            466777665 45667666554    69999999999988877766665444  2 11588899998653

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=83.29  E-value=6.8  Score=34.56  Aligned_cols=56  Identities=21%  Similarity=0.242  Sum_probs=39.1

Q ss_pred             CCCEEEEEcCCCchhHHH----HHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIP----AARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~----~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=.|++ |.++..    +++.|++|+.++.+++.++.+.+.+   +    .++.++.+|+.+.
T Consensus        28 ~gk~vlVTGas-~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~----~~~~~~~~Dv~d~   87 (277)
T 3gvc_A           28 AGKVAIVTGAG-AGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---G----CGAAACRVDVSDE   87 (277)
T ss_dssp             TTCEEEETTTT-STHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---C----SSCEEEECCTTCH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C----CcceEEEecCCCH
Confidence            56777777655 445444    4557999999999998777665443   3    2578888988654

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=83.22  E-value=8.2  Score=33.98  Aligned_cols=59  Identities=12%  Similarity=0.061  Sum_probs=42.0

Q ss_pred             CCCEEEEEcCCCchhHHH----HHhcCCEEEEEeC-CHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIP----AARRGAIVAANDL-NPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~----~a~~g~~V~avD~-~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.|++ |.++..    +++.|++|+.++. +++.++.+.+.+...+    .++.++.+|+.+.
T Consensus        28 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~   91 (280)
T 4da9_A           28 ARPVAIVTGGR-RGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLG----ARVIFLRADLADL   91 (280)
T ss_dssp             CCCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTT----CCEEEEECCTTSG
T ss_pred             CCCEEEEecCC-CHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcC----CcEEEEEecCCCH
Confidence            56778877755 455544    4457999999995 7877777777666555    2588999998653

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=83.11  E-value=18  Score=31.95  Aligned_cols=127  Identities=10%  Similarity=0.027  Sum_probs=73.4

Q ss_pred             CCEEEEEcCCCchhHHHHHh---------cCCEEEEEeC-----CHH-------------------HHHHHHHHH-----
Q psy16898        163 GDLVLDVFAGVGPFSIPAAR---------RGAIVAANDL-----NPD-------------------SYAWLQASI-----  204 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~---------~g~~V~avD~-----~~~-------------------a~~~a~~N~-----  204 (324)
                      ...|+++|+.-|.-++.++.         ...+|+++|.     .+.                   ..+..++-+     
T Consensus        70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~  149 (257)
T 3tos_A           70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC  149 (257)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred             CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence            44899999999998888664         1359999992     210                   011122111     


Q ss_pred             -HHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChh--hhHHHHHHHhc-cchhhcCCCC
Q psy16898        205 -RLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPA--TAVEYVRYLKV-LTREEFGKLS  280 (324)
Q Consensus       205 -~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~--~a~~~l~~~~~-l~~~~~~~~~  280 (324)
                       +.-+. +.++++++.|++.+.+.....+.            +...+|.|.+|--.  .....++.+.. +++       
T Consensus       150 ~~~~g~-~~~~i~li~G~~~dTL~~~l~~~------------~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~-------  209 (257)
T 3tos_A          150 SDFFGH-VTQRSVLVEGDVRETVPRYLAEN------------PQTVIALAYFDLDLYEPTKAVLEAIRPYLTK-------  209 (257)
T ss_dssp             TSTTTT-SCCSEEEEESCHHHHHHHHHHHC------------TTCCEEEEEECCCCHHHHHHHHHHHGGGEEE-------
T ss_pred             hhhcCC-CCCcEEEEEecHHHHHHHHHHhC------------CCCceEEEEEcCcccchHHHHHHHHHHHhCC-------
Confidence             11220 23689999999999888754421            12359999998632  12345555544 444       


Q ss_pred             CCCEEEEEEcccCCChhHHhHhhhcCCCce
Q psy16898        281 RPPVLYLYCFLPKMDLETKKKIKSYDPSYA  310 (324)
Q Consensus       281 ~~g~vh~y~f~~~~~~~~~~~v~~y~~~~~  310 (324)
                       ||+|.+..+....-+...+.++.+.....
T Consensus       210 -GGvIv~DD~~~~~w~G~~~A~~ef~~~~~  238 (257)
T 3tos_A          210 -GSIVAFDELDNPKWPGENIAMRKVLGLDH  238 (257)
T ss_dssp             -EEEEEESSTTCTTCTHHHHHHHHHTCTTS
T ss_pred             -CcEEEEcCCCCCCChHHHHHHHHHHhhCC
Confidence             48888887743211223334444444333

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=83.00  E-value=3.2  Score=37.92  Aligned_cols=42  Identities=33%  Similarity=0.414  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEcC--CCchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        160 VREGDLVLDVFA--GVGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       160 ~~~g~~VLDl~~--G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      +++|++||-.|+  |+|..++.+|+ .|++|+++ .+++.++.+++
T Consensus       148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~  192 (343)
T 3gaz_A          148 VQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRD  192 (343)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHH
Confidence            568999999983  46777777777 68899999 88888777643

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=82.94  E-value=9.4  Score=32.91  Aligned_cols=58  Identities=16%  Similarity=0.186  Sum_probs=41.5

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      .++++|=.| |+|.++..+++    .|++|+.++.+++.++.+.+.+...+  .  ++.++.+|+.+
T Consensus        13 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~--~~~~~~~D~~~   74 (260)
T 2zat_A           13 ENKVALVTA-STDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEG--L--SVTGTVCHVGK   74 (260)
T ss_dssp             TTCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--C--CEEEEECCTTC
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--C--ceEEEEccCCC
Confidence            466777665 55667766554    69999999999988776666665444  2  58888888754

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=82.88  E-value=8.8  Score=33.54  Aligned_cols=59  Identities=20%  Similarity=0.059  Sum_probs=41.6

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeC-CHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDL-NPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~-~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.|+ +|.++..++    +.|++|+.++. ++...+.+.+.+...+    .++.++.+|+.+.
T Consensus        27 ~~k~vlVTGa-s~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~d~   90 (269)
T 4dmm_A           27 TDRIALVTGA-SRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAG----GEAFAVKADVSQE   90 (269)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTSH
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC----CcEEEEECCCCCH
Confidence            5677776665 455655544    47999999888 7777777766666554    2688999998664

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=82.88  E-value=6.7  Score=34.20  Aligned_cols=58  Identities=14%  Similarity=0.056  Sum_probs=42.2

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHH-hCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRL-NERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~-n~~~l~~~v~~~~~D~~~  224 (324)
                      .|+++|=.|++ |.++..++    +.|++|+.++.++..++.+.+.+.. .+    .++.++.+|+.+
T Consensus        19 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~Dv~~   81 (266)
T 4egf_A           19 DGKRALITGAT-KGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFG----TDVHTVAIDLAE   81 (266)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC----CCEEEEECCTTS
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC----CcEEEEEecCCC
Confidence            46777766654 55655554    4799999999999988877776655 34    268899999865

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=82.83  E-value=1.9  Score=40.54  Aligned_cols=21  Identities=10%  Similarity=-0.031  Sum_probs=18.2

Q ss_pred             CCEEEEEcCCCchhHHHHHhc
Q psy16898        163 GDLVLDVFAGVGPFSIPAARR  183 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~~  183 (324)
                      ..+|+|+|||+|..++.++..
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~   73 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDF   73 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHH
Confidence            468999999999999998653

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=82.72  E-value=13  Score=32.12  Aligned_cols=59  Identities=17%  Similarity=-0.008  Sum_probs=42.2

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.|+ +|.++..++    +.|++|++++.++..++.+.+.+...+    .++.++.+|+.+.
T Consensus         8 ~~k~vlVTGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~   70 (260)
T 2ae2_A            8 EGCTALVTGG-SRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG----FKVEASVCDLSSR   70 (260)
T ss_dssp             TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CEEEEEECCTTCH
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCH
Confidence            4677886665 566665555    479999999999988777666665444    2588888998653

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=82.51  E-value=1.3  Score=41.06  Aligned_cols=42  Identities=29%  Similarity=0.367  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHH
Q psy16898        160 VREGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQ  201 (324)
Q Consensus       160 ~~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~  201 (324)
                      +.+|++||-.|+|. |.+++.+|+ .|+ +|+++|.+++.++.++
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~  234 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK  234 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence            56899999998752 555666666 688 8999999999888775

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=82.51  E-value=5.8  Score=34.88  Aligned_cols=58  Identities=16%  Similarity=0.031  Sum_probs=40.1

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.|+ +|.++..++    +.|++|+.++.++..++.+.+.+.  .  .. ++.++.+|+.+.
T Consensus        28 ~~k~vlVTGa-s~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~--~--~~-~~~~~~~Dv~d~   89 (276)
T 2b4q_A           28 AGRIALVTGG-SRGIGQMIAQGLLEAGARVFICARDAEACADTATRLS--A--YG-DCQAIPADLSSE   89 (276)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHT--T--SS-CEEECCCCTTSH
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--h--cC-ceEEEEeeCCCH
Confidence            4677887775 566665555    479999999999987766555443  2  22 578888887653

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=82.43  E-value=12  Score=32.67  Aligned_cols=58  Identities=16%  Similarity=0.092  Sum_probs=41.0

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHH-HHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASI-RLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~-~~n~~~l~~~v~~~~~D~~~  224 (324)
                      .++++|=.|+ +|.++..+++    .|++|++++.++..++.+.+.+ ...+  .  ++.++.+|+.+
T Consensus        20 ~~k~~lVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~--~~~~~~~Dl~~   82 (267)
T 1vl8_A           20 RGRVALVTGG-SRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--V--ETMAFRCDVSN   82 (267)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--C--CEEEEECCTTC
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--C--eEEEEEcCCCC
Confidence            4677776665 5666665554    7999999999998877666555 3334  2  57888888865

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=82.38  E-value=1.8  Score=40.25  Aligned_cols=42  Identities=17%  Similarity=0.052  Sum_probs=32.8

Q ss_pred             cCCCEEEEEcCCCchhHHHH---Hh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        161 REGDLVLDVFAGVGPFSIPA---AR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~---a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      .+|++||=.++|+|.+++.+   |+ .|++|++++.+++-++.+++
T Consensus       169 ~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~~  214 (379)
T 3iup_A          169 LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKA  214 (379)
T ss_dssp             HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh
Confidence            58899998876666666544   44 58899999999998888764

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=82.29  E-value=1.7  Score=39.74  Aligned_cols=44  Identities=20%  Similarity=0.304  Sum_probs=35.3

Q ss_pred             hccCCCEEEEEcCC--CchhHHHHHh-c-CCEEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAG--VGPFSIPAAR-R-GAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G--~G~~al~~a~-~-g~~V~avD~~~~a~~~a~~  202 (324)
                      .+.+|++||-.|+|  +|..++.+++ . |++|+++|.+++..+.+++
T Consensus       167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~  214 (347)
T 1jvb_A          167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR  214 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            46789999999987  6666666666 5 8999999999998887753

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=82.24  E-value=11  Score=33.06  Aligned_cols=59  Identities=17%  Similarity=0.071  Sum_probs=42.4

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHh-CCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLN-ERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n-~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.|+ +|.++..+++    +|++|++++.++..++.+.+.+... +    .++.++.+|+.+.
T Consensus        25 ~~k~vlITGa-sggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~Dl~~~   88 (302)
T 1w6u_A           25 QGKVAFITGG-GTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG----NKVHAIQCDVRDP   88 (302)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS----SCEEEEECCTTCH
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC----CceEEEEeCCCCH
Confidence            4667776664 5666666554    6899999999998877766665543 3    2588999998653

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=82.18  E-value=10  Score=32.46  Aligned_cols=59  Identities=19%  Similarity=0.098  Sum_probs=41.0

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeC-CHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDL-NPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~-~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.| |+|.++..+++    .|++|+.++. ++...+.+.+.+...+    .++.++.+|+.+.
T Consensus         3 ~~k~vlVTG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~   66 (246)
T 2uvd_A            3 KGKVALVTG-ASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLG----SDAIAVRADVANA   66 (246)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCH
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCH
Confidence            356666554 56777766654    6899999998 8887776666665444    2588888888653

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=82.13  E-value=1.5  Score=39.75  Aligned_cols=41  Identities=29%  Similarity=0.375  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEcC--CCchhHHHHHh-cCCEEEEEeCCHHHHHHH
Q psy16898        160 VREGDLVLDVFA--GVGPFSIPAAR-RGAIVAANDLNPDSYAWL  200 (324)
Q Consensus       160 ~~~g~~VLDl~~--G~G~~al~~a~-~g~~V~avD~~~~a~~~a  200 (324)
                      +.+|++||-.||  |+|..++.+++ .|++|+++|.+++.++.+
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~  186 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL  186 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            568999999997  56666666665 688999999999887776

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=82.05  E-value=11  Score=32.28  Aligned_cols=59  Identities=12%  Similarity=-0.027  Sum_probs=42.6

Q ss_pred             CCCEEEEEcCCCchhHHHHH----h-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----R-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      ++++||=.| |+|.++..++    + .|++|+.++.++...+.+.+.+...+    .++.++.+|+.+.
T Consensus         3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~   66 (276)
T 1wma_A            3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG----LSPRFHQLDIDDL   66 (276)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT----CCCEEEECCTTCH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC----CeeEEEECCCCCH
Confidence            456677554 6677776665    4 68899999999988777777666544    2588899998653

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=82.02  E-value=1.2  Score=41.16  Aligned_cols=43  Identities=21%  Similarity=0.203  Sum_probs=33.5

Q ss_pred             hccCCCEEEEEcCC-CchhHHHHHh-cCC-EEEEEeCCHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAG-VGPFSIPAAR-RGA-IVAANDLNPDSYAWLQ  201 (324)
Q Consensus       159 ~~~~g~~VLDl~~G-~G~~al~~a~-~g~-~V~avD~~~~a~~~a~  201 (324)
                      .+.+|++||-.||| +|.+++.+|+ .|+ +|+++|.+++.++.++
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~  233 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI  233 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence            36689999999875 3555666666 588 8999999999888775

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=81.92  E-value=0.88  Score=41.10  Aligned_cols=42  Identities=21%  Similarity=0.072  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcCC-CchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        160 VREGDLVLDVFAG-VGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       160 ~~~g~~VLDl~~G-~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      +++|++||=.|+| +|.+++.+|+ .|++|++++ +++..+.+++
T Consensus       140 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~  183 (315)
T 3goh_A          140 LTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAK  183 (315)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHH
Confidence            5689999999985 4666666776 688999999 9888887754

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=81.86  E-value=1.8  Score=40.24  Aligned_cols=42  Identities=26%  Similarity=0.264  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcCC-CchhHHHHHh-cC-CEEEEEeCCHHHHHHHH
Q psy16898        160 VREGDLVLDVFAG-VGPFSIPAAR-RG-AIVAANDLNPDSYAWLQ  201 (324)
Q Consensus       160 ~~~g~~VLDl~~G-~G~~al~~a~-~g-~~V~avD~~~~a~~~a~  201 (324)
                      +.+|++||-.||| +|.+++.+|+ .| ++|++++.+++.++.++
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~  237 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE  237 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH
Confidence            6689999999965 4556666666 68 49999999999888875

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=81.86  E-value=5.3  Score=35.26  Aligned_cols=59  Identities=17%  Similarity=0.127  Sum_probs=40.8

Q ss_pred             CCCEEEEEcCCCch---hHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGP---FSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~---~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=-|++.|.   ++..+++.|++|+.++.+.+..+.+++ +...+    .++.++.+|+.+.
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~-~~~~~----~~~~~~~~Dv~~~   67 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDA-LAQRQ----PRATYLPVELQDD   67 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHH-HHHHC----TTCEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHH-HHhcC----CCEEEEEeecCCH
Confidence            57888888877663   455666789999999998776555444 33333    2578888988653

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=81.82  E-value=1.7  Score=39.78  Aligned_cols=43  Identities=7%  Similarity=0.042  Sum_probs=34.3

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-c--CCEEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-R--GAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~--g~~V~avD~~~~a~~~a~~  202 (324)
                      .+ +|++||-.|+|. |.+++.+|+ .  |++|+++|.+++.++.+++
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~  214 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE  214 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH
Confidence            45 899999999853 556666666 5  8999999999998888754

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=81.80  E-value=8.6  Score=33.30  Aligned_cols=61  Identities=23%  Similarity=0.090  Sum_probs=40.3

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.|+ +|.++..++    +.|++|++++.++...+.+.+.+....  -..++.++.+|+.+.
T Consensus         6 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~D~~~~   70 (267)
T 2gdz_A            6 NGKVALVTGA-AQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF--EPQKTLFIQCDVADQ   70 (267)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS--CGGGEEEEECCTTSH
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhc--CCCceEEEecCCCCH
Confidence            4567777765 566665555    479999999999887766555443211  112588889998653

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=81.63  E-value=7  Score=33.34  Aligned_cols=59  Identities=22%  Similarity=0.190  Sum_probs=41.1

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCC-HHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLN-PDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~-~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .+++||=. .|+|.++..+++    +|++|++++.+ +..++.+.+.+...+    .++.++.+|+.+.
T Consensus         6 ~~k~vlVT-GasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~   69 (258)
T 3afn_B            6 KGKRVLIT-GSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADG----GDAAFFAADLATS   69 (258)
T ss_dssp             TTCEEEET-TCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTT----CEEEEEECCTTSH
T ss_pred             CCCEEEEe-CCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcC----CceEEEECCCCCH
Confidence            45677744 456777776665    68999999998 666666555555444    2588999998653

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=81.62  E-value=1.5  Score=40.70  Aligned_cols=42  Identities=26%  Similarity=0.286  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHH
Q psy16898        160 VREGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQ  201 (324)
Q Consensus       160 ~~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~  201 (324)
                      +.+|++||-.|+|. |.+++.+|+ .|+ +|+++|.+++.++.++
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~  233 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK  233 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence            56899999998753 555566666 688 8999999999888775

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=81.57  E-value=12  Score=32.93  Aligned_cols=63  Identities=10%  Similarity=0.068  Sum_probs=43.6

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCC-CCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNER-QVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~-~l~~~v~~~~~D~~~~  225 (324)
                      .+++||=.|+ +|.++..+++    .|++|++++.++..++.+.+.+..... ....++.++.+|+.+.
T Consensus        17 ~~k~vlVTGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~   84 (303)
T 1yxm_A           17 QGQVAIVTGG-ATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNE   84 (303)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCH
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCH
Confidence            4678887774 5777766654    689999999999888777766654210 0013688999998653

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=81.53  E-value=1.5  Score=40.70  Aligned_cols=42  Identities=26%  Similarity=0.306  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEcCC-CchhHHHHHh-cCC-EEEEEeCCHHHHHHHH
Q psy16898        160 VREGDLVLDVFAG-VGPFSIPAAR-RGA-IVAANDLNPDSYAWLQ  201 (324)
Q Consensus       160 ~~~g~~VLDl~~G-~G~~al~~a~-~g~-~V~avD~~~~a~~~a~  201 (324)
                      +.+|++||-.|+| +|.+++.+|+ .|+ +|+++|.+++.++.++
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~  237 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK  237 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence            5689999999875 3555666666 688 8999999998888765

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=81.50  E-value=6.4  Score=34.63  Aligned_cols=58  Identities=21%  Similarity=0.146  Sum_probs=42.9

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      .|+++|=.|+ +|.++..++    +.|++|+.++.++...+.+.+.+...+    .++.++.+|+.+
T Consensus        32 ~gk~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~   93 (275)
T 4imr_A           32 RGRTALVTGS-SRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG----GTAQELAGDLSE   93 (275)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT----CCEEEEECCTTS
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC----CeEEEEEecCCC
Confidence            5777776665 456665554    479999999999988877777776555    268899999865

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=81.43  E-value=9.5  Score=28.01  Aligned_cols=71  Identities=21%  Similarity=0.076  Sum_probs=45.7

Q ss_pred             CCEEEEEcCCCchhHHHHHh----cC-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        163 GDLVLDVFAGVGPFSIPAAR----RG-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~----~g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.+|+=+|+  |.++..+++    .| .+|+++|.++..++.+.      .  .  .+.++..|..+.-.  ..+.    
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~------~--~--~~~~~~~d~~~~~~--~~~~----   66 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN------R--M--GVATKQVDAKDEAG--LAKA----   66 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH------T--T--TCEEEECCTTCHHH--HHHH----
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH------h--C--CCcEEEecCCCHHH--HHHH----
Confidence            457888877  777766554    68 69999999998776654      2  1  35667777654311  1110    


Q ss_pred             cccCCCCCCCCcccEEEECChhh
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                               ...+|.||...|..
T Consensus        67 ---------~~~~d~vi~~~~~~   80 (118)
T 3ic5_A           67 ---------LGGFDAVISAAPFF   80 (118)
T ss_dssp             ---------TTTCSEEEECSCGG
T ss_pred             ---------HcCCCEEEECCCch
Confidence                     12389999887764

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=81.41  E-value=1.9  Score=39.79  Aligned_cols=44  Identities=23%  Similarity=0.355  Sum_probs=36.1

Q ss_pred             hccCCCEEEEEc--CCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVF--AGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~--~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||-.|  .|+|..++.+|+ .|++|++++.+++.++.+++
T Consensus       160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~  206 (362)
T 2c0c_A          160 GLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS  206 (362)
T ss_dssp             CCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence            367899999998  467888888777 68899999999988887754

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=81.38  E-value=9.2  Score=33.81  Aligned_cols=58  Identities=16%  Similarity=0.060  Sum_probs=40.5

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEe-CCHHHHHHHHHHHH-HhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAAND-LNPDSYAWLQASIR-LNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD-~~~~a~~~a~~N~~-~n~~~l~~~v~~~~~D~~~  224 (324)
                      .++++|=.|+ +|.++..+++    .|++|+.++ .++..++.+.+.+. ..+    .++.++.+|+.+
T Consensus         8 ~~k~~lVTGa-s~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~Dl~~   71 (291)
T 1e7w_A            8 TVPVALVTGA-AKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP----NSAITVQADLSN   71 (291)
T ss_dssp             CCCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST----TCEEEEECCCSS
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcC----CeeEEEEeecCC
Confidence            4567776654 5666666554    699999999 99988877766665 333    257888887654

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=81.34  E-value=10  Score=32.64  Aligned_cols=59  Identities=12%  Similarity=-0.010  Sum_probs=42.1

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.| |+|.++..+++    .|++|+.++.++..++.+.+.+...+    .++.++.+|+.+.
T Consensus         4 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~   66 (260)
T 2qq5_A            4 NGQVCVVTG-ASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLG----GQCVPVVCDSSQE   66 (260)
T ss_dssp             TTCEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS----SEEEEEECCTTSH
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcC----CceEEEECCCCCH
Confidence            356676666 55667766654    69999999999988877666665444    2588889998653

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=81.30  E-value=1.4  Score=40.83  Aligned_cols=42  Identities=24%  Similarity=0.304  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHH
Q psy16898        160 VREGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQ  201 (324)
Q Consensus       160 ~~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~  201 (324)
                      +++|++||-.|+|. |.+++.+|+ .|+ +|+++|.+++.++.++
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~  232 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK  232 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence            56899999998753 555556665 588 8999999999888875

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=81.27  E-value=1  Score=39.77  Aligned_cols=31  Identities=19%  Similarity=0.240  Sum_probs=23.9

Q ss_pred             CeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        214 PISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       214 ~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      ..+++++|+.+++....                ..+||.|++|||+.
T Consensus         4 ~~~l~~gD~~~~l~~l~----------------~~~vdlI~~DPPY~   34 (260)
T 1g60_A            4 INKIHQMNCFDFLDQVE----------------NKSVQLAVIDPPYN   34 (260)
T ss_dssp             SSSEEECCHHHHHHHSC----------------TTCEEEEEECCCCS
T ss_pred             cCeEEechHHHHHHhcc----------------ccccCEEEECCCCC
Confidence            35688999999876532                13599999999984

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=81.27  E-value=1.2  Score=40.41  Aligned_cols=42  Identities=24%  Similarity=0.293  Sum_probs=34.4

Q ss_pred             hccCCCEEEEEcC--CCchhHHHHHh-cCCEEEEEeCCHHHHHHH
Q psy16898        159 EVREGDLVLDVFA--GVGPFSIPAAR-RGAIVAANDLNPDSYAWL  200 (324)
Q Consensus       159 ~~~~g~~VLDl~~--G~G~~al~~a~-~g~~V~avD~~~~a~~~a  200 (324)
                      .+++|++||-.||  |+|..++.+++ .|++|++++.+++.++.+
T Consensus       146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~  190 (336)
T 4b7c_A          146 QPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFL  190 (336)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            3678999999987  56777777776 688999999999887776

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=81.17  E-value=11  Score=32.42  Aligned_cols=56  Identities=27%  Similarity=0.189  Sum_probs=38.9

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.|+ +|.++..++    +.|++|+.++.++...+.+.+.+   +    .++.++.+|+.+.
T Consensus         7 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~----~~~~~~~~D~~~~   66 (259)
T 4e6p_A            7 EGKSALITGS-ARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---G----PAAYAVQMDVTRQ   66 (259)
T ss_dssp             TTCEEEEETC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C----TTEEEEECCTTCH
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C----CCceEEEeeCCCH
Confidence            4677887775 456655544    47999999999998766554433   3    2578888998653

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=81.17  E-value=1.2  Score=41.13  Aligned_cols=44  Identities=16%  Similarity=0.027  Sum_probs=34.5

Q ss_pred             hccCCCEEEEEcCC-CchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAG-VGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G-~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||-.|+| +|.+++.+|+ .|++|++++.+++.++.+++
T Consensus       176 ~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          176 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK  221 (360)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            46789999999974 3555666666 68899999999988887764

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=81.11  E-value=2.7  Score=36.54  Aligned_cols=59  Identities=29%  Similarity=0.171  Sum_probs=44.1

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.|++ |+++..++    +.|++|+.++.++..++.+.+.+...+    .++.++.+|+.+.
T Consensus         6 ~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~   68 (252)
T 3h7a_A            6 RNATVAVIGAG-DYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG----GRIVARSLDARNE   68 (252)
T ss_dssp             CSCEEEEECCS-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT----CEEEEEECCTTCH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CeEEEEECcCCCH
Confidence            46777777765 45555544    579999999999998888887777655    2688999998653

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=81.09  E-value=1.4  Score=40.47  Aligned_cols=44  Identities=20%  Similarity=0.214  Sum_probs=34.8

Q ss_pred             hccCCCEEEEEcC--CCchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFA--GVGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~--G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      .+.+|++||-.|+  |+|..++.+++ .|++|++++.+++..+.+++
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~  212 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS  212 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH
Confidence            3568999999998  56777766666 68899999999887776653

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=81.00  E-value=0.89  Score=40.80  Aligned_cols=42  Identities=31%  Similarity=0.352  Sum_probs=34.6

Q ss_pred             ccCCCEEEEEcC--CCchhHHHHHh-cCCEEEEEeCCHHHHHHHH
Q psy16898        160 VREGDLVLDVFA--GVGPFSIPAAR-RGAIVAANDLNPDSYAWLQ  201 (324)
Q Consensus       160 ~~~g~~VLDl~~--G~G~~al~~a~-~g~~V~avD~~~~a~~~a~  201 (324)
                      +++|++||-.|+  |+|..++.+|+ .|++|++++.+++..+.++
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~  167 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL  167 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            678999999997  56777777776 6889999999998877764

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=80.88  E-value=10  Score=32.85  Aligned_cols=56  Identities=16%  Similarity=0.217  Sum_probs=39.8

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=.|++ |.++..++    +.|++|+.++.+++.++.+.+.+   +    .++.++.+|+.+.
T Consensus         7 ~gk~~lVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~----~~~~~~~~Dv~~~   66 (255)
T 4eso_A            7 QGKKAIVIGGT-HGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G----PRVHALRSDIADL   66 (255)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G----GGEEEEECCTTCH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C----CcceEEEccCCCH
Confidence            46788877755 55555544    47999999999998877665543   2    2588888988654

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=80.87  E-value=11  Score=32.70  Aligned_cols=59  Identities=20%  Similarity=0.049  Sum_probs=41.3

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeC-CHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDL-NPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~-~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|++||=.|++ |.++..++    ++|++|+.++. ++...+.+.+.++..+  .  ++.++.+|+.+.
T Consensus        28 ~~k~vlITGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~--~~~~~~~D~~~~   91 (271)
T 4iin_A           28 TGKNVLITGAS-KGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKG--Y--KAAVIKFDAASE   91 (271)
T ss_dssp             SCCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--C--CEEEEECCTTCH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--C--ceEEEECCCCCH
Confidence            56777766654 55665554    47999999998 6666666666666555  2  588999998653

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=80.76  E-value=1.4  Score=40.45  Aligned_cols=31  Identities=19%  Similarity=0.124  Sum_probs=24.1

Q ss_pred             CeEEE-eccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        214 PISAT-QKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       214 ~v~~~-~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      ...++ ++|+.+++..+.                ..++|.|++|||+.
T Consensus        38 ~~~l~i~gD~l~~L~~l~----------------~~svDlI~tDPPY~   69 (319)
T 1eg2_A           38 TRHVYDVCDCLDTLAKLP----------------DDSVQLIICDPPYN   69 (319)
T ss_dssp             EEEEEEECCHHHHHHTSC----------------TTCEEEEEECCCSB
T ss_pred             cceEEECCcHHHHHHhCc----------------cCCcCEEEECCCCC
Confidence            46788 999999886532                23599999999995

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=80.73  E-value=8.8  Score=32.42  Aligned_cols=58  Identities=12%  Similarity=-0.000  Sum_probs=41.8

Q ss_pred             CCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHH-HhCCCCCCCeEEEeccHHHH
Q psy16898        163 GDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIR-LNERQVKTPISATQKDARDF  225 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~-~n~~~l~~~v~~~~~D~~~~  225 (324)
                      ++++|=.|+ +|.++..+++    .|++|+.++.+++.++.+.+.+. ..+    .++.++.+|+.+.
T Consensus         2 ~k~vlITGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~   64 (235)
T 3l77_A            2 MKVAVITGA-SRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQG----VEVFYHHLDVSKA   64 (235)
T ss_dssp             CCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC----CCEEEEECCTTCH
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC----CeEEEEEeccCCH
Confidence            456776664 5666665554    79999999999988887776665 334    2688999998664

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=80.71  E-value=0.88  Score=42.31  Aligned_cols=42  Identities=26%  Similarity=0.288  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcCC-CchhHHHHHh-cCC-EEEEEeCCHHHHHHHH
Q psy16898        160 VREGDLVLDVFAG-VGPFSIPAAR-RGA-IVAANDLNPDSYAWLQ  201 (324)
Q Consensus       160 ~~~g~~VLDl~~G-~G~~al~~a~-~g~-~V~avD~~~~a~~~a~  201 (324)
                      +++|++||-.|+| +|.+++.+|+ .|+ +|+++|.+++.++.++
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~  235 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK  235 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence            5689999999875 3566666666 588 8999999999888765

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=80.65  E-value=1.5  Score=39.96  Aligned_cols=42  Identities=24%  Similarity=0.271  Sum_probs=34.5

Q ss_pred             ccCCCEEEEEcC--CCchhHHHHHh-cCCEEEEEeCCHHHHHHHH
Q psy16898        160 VREGDLVLDVFA--GVGPFSIPAAR-RGAIVAANDLNPDSYAWLQ  201 (324)
Q Consensus       160 ~~~g~~VLDl~~--G~G~~al~~a~-~g~~V~avD~~~~a~~~a~  201 (324)
                      +.+|++||-.||  |+|..++.+++ .|++|++++.+++.++.++
T Consensus       153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~  197 (345)
T 2j3h_A          153 PKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLK  197 (345)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            568999999996  56777777776 6889999999998877765

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=80.64  E-value=8.6  Score=33.18  Aligned_cols=58  Identities=14%  Similarity=0.007  Sum_probs=39.0

Q ss_pred             CCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHH--HHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        163 GDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDS--YAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a--~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      ++++|=.|+ +|.++..++    +.|++|+.++.++..  ++.+.+.+...+    .++.++.+|+.+.
T Consensus         2 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~   65 (258)
T 3a28_C            2 SKVAMVTGG-AQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAAD----QKAVFVGLDVTDK   65 (258)
T ss_dssp             CCEEEEETT-TSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTT----CCEEEEECCTTCH
T ss_pred             CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcC----CcEEEEEccCCCH
Confidence            456666664 566665555    469999999998876  655555554333    3688899998653

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=80.55  E-value=13  Score=32.06  Aligned_cols=59  Identities=20%  Similarity=0.056  Sum_probs=42.2

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeC-CHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDL-NPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~-~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      ++++||=.| |+|.++..+++    +|++|++++. ++...+.+.+.+...+    .++.++.+|+.+.
T Consensus        20 ~~k~vlItG-asggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~   83 (274)
T 1ja9_A           20 AGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG----AQGVAIQADISKP   83 (274)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTSH
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcC----CcEEEEEecCCCH
Confidence            466777555 56777776665    6899999998 8877776666665444    2588899998653

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=80.43  E-value=9.6  Score=32.73  Aligned_cols=56  Identities=27%  Similarity=0.202  Sum_probs=39.1

Q ss_pred             CCCEEEEEcCCCchhHHHH----HhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPA----ARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~----a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=.|++ |.++..+    ++.|++|+.++.+++.++.+.+.+   +    .++.++.+|+.+.
T Consensus         5 ~gk~vlVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~----~~~~~~~~Dv~~~   64 (247)
T 3rwb_A            5 AGKTALVTGAA-QGIGKAIAARLAADGATVIVSDINAEGAKAAAASI---G----KKARAIAADISDP   64 (247)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C----TTEEECCCCTTCH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C----CceEEEEcCCCCH
Confidence            46778877754 5555554    457999999999998776654433   3    2588888888653

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=80.38  E-value=13  Score=31.87  Aligned_cols=56  Identities=25%  Similarity=0.203  Sum_probs=39.5

Q ss_pred             CCCEEEEEcCCCchhHH----HHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSI----PAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al----~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.|++ |.++.    .++++|++|+.++.++..++.+.+.+   +    .++.++.+|+.+.
T Consensus         8 ~~k~vlITGas-~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~----~~~~~~~~D~~~~   67 (261)
T 3n74_A            8 EGKVALITGAG-SGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI---G----DAALAVAADISKE   67 (261)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C----TTEEEEECCTTSH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh---C----CceEEEEecCCCH
Confidence            46788877766 44444    44557999999999998777665532   3    2588899998653

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=80.33  E-value=21  Score=30.94  Aligned_cols=59  Identities=14%  Similarity=-0.010  Sum_probs=42.3

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.|+ +|.++..+++    .|++|+.++.++..++.+.+.+...+  .  ++.++.+|+.+.
T Consensus        20 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~--~~~~~~~D~~~~   82 (273)
T 1ae1_A           20 KGTTALVTGG-SKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--L--NVEGSVCDLLSR   82 (273)
T ss_dssp             TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--C--CEEEEECCTTCH
T ss_pred             CCCEEEEECC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--C--ceEEEECCCCCH
Confidence            4677887775 5666655554    69999999999988777666555444  2  588889998653

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=80.33  E-value=7  Score=35.36  Aligned_cols=44  Identities=30%  Similarity=0.346  Sum_probs=33.1

Q ss_pred             hccCCCEEEEEcCC-CchhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAG-VGPFSIPAAR-RGA-IVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G-~G~~al~~a~-~g~-~V~avD~~~~a~~~a~~  202 (324)
                      .+.+|++||=.|+| +|.+++.+|+ .|+ .++++|.+++-++.+++
T Consensus       157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~  203 (346)
T 4a2c_A          157 QGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS  203 (346)
T ss_dssp             TCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH
Confidence            36689999999875 3555666666 576 77999999998887753

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=80.29  E-value=5.8  Score=35.71  Aligned_cols=59  Identities=24%  Similarity=0.282  Sum_probs=41.4

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCC----------HHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLN----------PDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~----------~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=.|++ |.++..+|    +.|++|+.+|.+          ....+.+.+.+...+    .++.++.+|+.+.
T Consensus        26 ~gk~vlVTGas-~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~   98 (322)
T 3qlj_A           26 DGRVVIVTGAG-GGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG----GEAVADGSNVADW   98 (322)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT----CEEEEECCCTTSH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcC----CcEEEEECCCCCH
Confidence            56777766654 55655544    579999999987          666666666666555    2588899998653

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=80.18  E-value=14  Score=32.54  Aligned_cols=60  Identities=12%  Similarity=0.077  Sum_probs=41.1

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeC-CHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDL-NPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~-~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .++++|=.|++ |.++..++    +.|++|+.++. ++..++.+.+.+....   ..++.++.+|+.+.
T Consensus        24 ~~k~~lVTGas-~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~d~   88 (281)
T 3v2h_A           24 MTKTAVITGST-SGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLS---SGTVLHHPADMTKP   88 (281)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTC---SSCEEEECCCTTCH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhcc---CCcEEEEeCCCCCH
Confidence            46778877754 55555544    57999999998 7777776666555332   23688999998653

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=80.16  E-value=16  Score=31.58  Aligned_cols=58  Identities=14%  Similarity=0.000  Sum_probs=40.5

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeC-CHHHHHHHHHHHHHh-CCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDL-NPDSYAWLQASIRLN-ERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~-~~~a~~~a~~N~~~n-~~~l~~~v~~~~~D~~~  224 (324)
                      .++++|=.| |+|.++..+++    .|++|+.++. ++..++.+.+.+... +    .++.++.+|+.+
T Consensus        10 ~~k~~lVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~   73 (276)
T 1mxh_A           10 ECPAAVITG-GARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARA----GSAVLCKGDLSL   73 (276)
T ss_dssp             -CCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST----TCEEEEECCCSS
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcC----CceEEEeccCCC
Confidence            456777554 55777766654    6999999999 988877766666543 3    258888888764

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=80.05  E-value=12  Score=32.12  Aligned_cols=59  Identities=19%  Similarity=0.032  Sum_probs=41.4

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeC-CHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDL-NPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~-~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .+++||=.| |+|.++..+++    +|++|++++. ++...+.+.+.+...+    .++.++.+|+.+.
T Consensus         6 ~~k~vlITG-asggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~   69 (261)
T 1gee_A            6 EGKVVVITG-SSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG----GEAIAVKGDVTVE   69 (261)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT----CEEEEEECCTTSH
T ss_pred             CCCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcC----CceEEEECCCCCH
Confidence            456677555 56777766654    6899999999 8877776666665434    2588888998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	324
d2frna1	260	c.66.1.47 (A:19-278) Hypothetical protein PH0793 {	6e-32
d2dula1	375	c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tR	1e-05
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	1e-04
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	2e-04
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	3e-04
d2oyra1	250	c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shi	4e-04
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	4e-04
d2igta1	309	c.66.1.51 (A:1-309) Putative methyltransferase Atu	0.001
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	0.001

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  117 bits (295), Expect = 6e-32
 Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 32/237 (13%)

Query: 62  SSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAG 121
             +  +G ++   LR EL  +K  I  V  + V   +TV+ K H I    R    ELL G
Sbjct: 10  KRWVRIGDVLLLPLRPELEPYKHRIAEVYAE-VLGVKTVLRKGH-IHGETRKPDYELLYG 67

Query: 122 KDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAA 181
            D +   H ENG  +K+D +K+ ++     E  R+ K  +  +LV+D+FAG+G  S+P A
Sbjct: 68  SDTVTV-HVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIA 126

Query: 182 RRGAI-VAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS 240
             G   V A + +P ++ +L  +I LN            +D       D R         
Sbjct: 127 VYGKAKVIAIEKDPYTFKFLVENIHLN----------KVEDRMSAYNMDNRDFPGENI-- 174

Query: 241 EGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLE 297
                      R++M       E++     + ++         +++ +  +P+  + 
Sbjct: 175 ---------ADRILMGYVVRTHEFIPKALSIAKDG-------AIIHYHNTVPEKLMP 215

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} Length = 375

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 143 VYWNSRLSTEHERVTK--EVREGDLVLDVFAGVGPFSIPAARRGAI--VAANDLNPDSYA 198
           V++N R++   + V     +    +VLD  +  G   I  A       V  ND++ D+Y 
Sbjct: 24  VFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYE 83

Query: 199 WLQASIRLN 207
            ++ ++ LN
Sbjct: 84  LMKRNVMLN 92

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 4/82 (4%)

Query: 158 KEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPIS 216
             + +  +VLDV  G G  S+ AA+ GA  V   D +       QA   +   +++  I+
Sbjct: 31  PHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE---ILYQAMDIIRLNKLEDTIT 87

Query: 217 ATQKDARDFLQTDARAHLVRWS 238
             +    +      +  ++   
Sbjct: 88  LIKGKIEEVHLPVEKVDVIISE 109

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 158 KEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPIS 216
           K++ +  +VLDV  G G  S+ AA+ GA  V   D++        A   +        I+
Sbjct: 34  KDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS---IIEMAKELVELNGFSDKIT 90

Query: 217 ATQKDARDFLQTDARAHLV 235
             +    D      +  ++
Sbjct: 91  LLRGKLEDVHLPFPKVDII 109

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISAT 218
           E  + D+ +DV  G G  ++  A R   V A D NP+  A     + L    +   ++  
Sbjct: 30  EPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPE--AISTTEMNLQRHGLGDNVTLM 87

Query: 219 QKDARDFLQTDARAHLV 235
           + DA + L       + 
Sbjct: 88  EGDAPEALCKIPDIDIA 104

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 20/112 (17%), Positives = 32/112 (28%), Gaps = 9/112 (8%)

Query: 136 FKMDFSKVYWNSRL---STEHERVTKEV----REGDLVLDVFAGVGPFSIPAARRGAIVA 188
             +DF       R        E V K V         V+D  AG+G  +   A  G  V 
Sbjct: 55  IFVDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVR 114

Query: 189 ANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS 240
             + NP   A L   +       +      ++     +   +   L   +  
Sbjct: 115 MLERNPVVAALLDDGLARGYADAEIGGWLQER--LQLIHASSLTALTDITPR 164

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.4 bits (91), Expect = 4e-04
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 158 KEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPIS 216
           + + +  +VLDV +G G   + AA+ GA  V   + +  S   ++         V T I 
Sbjct: 29  RHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTII- 87

Query: 217 ATQKDARDFLQTDARAHLV 235
             +    +      +  ++
Sbjct: 88  --KGKVEEVELPVEKVDII 104

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 9/103 (8%)

Query: 130 KENGCTFKMDFSKVYWNSRLSTEHERVTKEVRE-------GDLVLDVFAGVGPFSIPAAR 182
              G  F   F+  + +  +  E     + ++           VL++F   G  S+ AA 
Sbjct: 94  SLLGVEFLGRFTA-FRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAA 152

Query: 183 RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225
            GA V   D +  +  W + +  L   + + PI    +DA  F
Sbjct: 153 AGAEVTHVDASKKAIGWAKENQVLAGLE-QAPIRWICEDAMKF 194

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 9/41 (21%), Positives = 14/41 (34%)

Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAW 199
           E R    VLD+ AG G  ++  +         D   +    
Sbjct: 13  ECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEV 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	324
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	100.0
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.97
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.97
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.97
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.92
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.81
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.74
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.69
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.68
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.65
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.61
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.6
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.6
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.57
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.54
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.53
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.52
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.51
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.45
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.45
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.45
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.44
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.43
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.4
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.37
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.37
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.36
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.34
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.33
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.33
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.33
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.32
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.32
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.31
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.3
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.27
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.25
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.23
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.23
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.21
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.19
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.19
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.18
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.17
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.14
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.13
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.12
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.1
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.09
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.08
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.07
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.05
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.02
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.0
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.0
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.99
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.99
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.98
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.97
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.9
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.85
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.83
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.82
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.82
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.8
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.72
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.72
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.72
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.72
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.69
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.69
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.65
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.65
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.64
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.62
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.61
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.6
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.59
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.59
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.56
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.55
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.41
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.4
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.38
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.34
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.33
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.29
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.28
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.26
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.21
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.19
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	98.17
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.89
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.89
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	97.84
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.8
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.72
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.68
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	97.47
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	97.45
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	97.34
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.33
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.26
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.25
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	96.87
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	96.12
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	96.02
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.75
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	95.68
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.61
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.36
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.29
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.24
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	95.1
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.72
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.64
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.62
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.52
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.01
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.95
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.91
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	93.66
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	93.43
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	93.08
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	93.05
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	92.97
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	92.86
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.78
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	92.71
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	92.53
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	92.36
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.35
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	92.32
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	92.32
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.04
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	91.93
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	91.83
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	91.62
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	91.27
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	91.24
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	90.9
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	90.84
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	90.7
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	90.67
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	90.5
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	90.41
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	90.17
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	89.76
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	89.61
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	89.59
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	89.54
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	89.54
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	89.25
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	89.17
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	89.03
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	88.97
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	88.95
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	88.94
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	87.95
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	87.89
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	87.83
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	87.76
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.46
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	87.45
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	87.41
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	87.04
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	87.02
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	86.91
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	86.85
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	86.75
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	86.68
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	86.06
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	85.92
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	85.66
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	84.65
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	84.6
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	84.16
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	83.73
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	83.16
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	82.22
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	82.22
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	82.06
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	82.02
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	81.97

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=2.9e-40  Score=299.93  Aligned_cols=227  Identities=30%  Similarity=0.456  Sum_probs=185.6

Q ss_pred             CCCceeEEECCEEEEEeCchhhhhHHHHHHHHHhhCCCceEEEEcCCCCCcccccceeeEEccCCCeEEEEEeCCeEEEE
Q psy16898         59 VAMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKM  138 (324)
Q Consensus        59 ~~~~~~d~~G~i~vi~~~~~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~~~~~~~~l~G~~~~~~~~~e~g~~f~i  138 (324)
                      .+|++||++||++++++++++.++++.|++++.+..+ +++|+.+. .+.+.+|....++|+|++ +++.++|+|++|.+
T Consensus         7 ~lP~~~e~~Gdi~ii~~~~~~~~~~~~i~~~l~~~~~-~k~v~~k~-~i~g~~R~~~~~~l~G~~-~~~~~~E~g~~~~~   83 (260)
T d2frna1           7 LLPKRWVRIGDVLLLPLRPELEPYKHRIAEVYAEVLG-VKTVLRKG-HIHGETRKPDYELLYGSD-TVTVHVENGIKYKL   83 (260)
T ss_dssp             CSCSCCEEETTEEECC--CCSCSCCTHHHHHHHHHHT-CSEEEECC-----------CEEEECSC-CEEEEEETTEEEEE
T ss_pred             hCCCCeEEECCEEEEECCCchhHHHHHHHHHHHhhcC-CeEEEEcC-CccchhccccceecCCCC-ceeEEEecCeeEEe
Confidence            5899999999999999988888899999999988754 99999884 467889988999999986 67888999999999


Q ss_pred             eccceeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEE
Q psy16898        139 DFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISA  217 (324)
Q Consensus       139 d~~~~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~  217 (324)
                      |++++||++++.+|+.++.+.+++|++|||+|||+|+|++.+|++|+ +|+|+|+||.|++++++|++.|+  +.+++++
T Consensus        84 d~~~~~f~~~~~~er~ri~~~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~--l~~~v~~  161 (260)
T d2frna1          84 DVAKIMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNK--VEDRMSA  161 (260)
T ss_dssp             ETTTSCCCGGGHHHHHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTT--CTTTEEE
T ss_pred             ccccccEecCCHHHHHHHHhhcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhC--CCceEEE
Confidence            99999999999999999999999999999999999999999999875 99999999999999999999999  9888999


Q ss_pred             EeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCCh
Q psy16898        218 TQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDL  296 (324)
Q Consensus       218 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~  296 (324)
                      +++|++++..+                   ..||+|+||||..+.+|++.+.. ++++        |++|+|+|+..+..
T Consensus       162 ~~~D~~~~~~~-------------------~~~D~Ii~~~p~~~~~~l~~a~~~l~~g--------G~lh~~~~~~~~~~  214 (260)
T d2frna1         162 YNMDNRDFPGE-------------------NIADRILMGYVVRTHEFIPKALSIAKDG--------AIIHYHNTVPEKLM  214 (260)
T ss_dssp             ECSCTTTCCCC-------------------SCEEEEEECCCSSGGGGHHHHHHHEEEE--------EEEEEEEEEEGGGT
T ss_pred             EEcchHHhccC-------------------CCCCEEEECCCCchHHHHHHHHhhcCCC--------CEEEEEeccccccc
Confidence            99999876432                   35999999999989999988766 6664        99999999875321


Q ss_pred             -----h-HHh---------------HhhhcCCCceEEEEeec
Q psy16898        297 -----E-TKK---------------KIKSYDPSYATLIRGIR  317 (324)
Q Consensus       297 -----~-~~~---------------~v~~y~~~~~~~i~~~~  317 (324)
                           + ..+               .|++|.|+..+.+++++
T Consensus       215 ~~~~~e~~~~~~~~~g~~v~~~~~~~Vk~yaP~~~~v~~D~~  256 (260)
T d2frna1         215 PREPFETFKRITKEYGYDVEKLNELKIKRYAPGVWHVVLDLR  256 (260)
T ss_dssp             TTTTHHHHHHHHHHTTCEEEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             hhhHHHHHHHHHHHcCCceEEEEEEEEECcCCCccEEEEEEE
Confidence                 1 111               13467777777777765

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.97  E-value=9.4e-31  Score=243.23  Aligned_cols=240  Identities=18%  Similarity=0.165  Sum_probs=179.5

Q ss_pred             eeEEECCEEEEEeCc-hhhhhHHHHHHHHHhhCCCceEEEEcCCCCCcccccceeeEEccC-CCeEEEEEeCCeEEEEec
Q psy16898         63 SFTSVGHIVHCNLRE-ELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGK-DCMVTMHKENGCTFKMDF  140 (324)
Q Consensus        63 ~~d~~G~i~vi~~~~-~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~~~~~~~~l~G~-~~~~~~~~e~g~~f~id~  140 (324)
                      -+|+||+++++++.+ .+.+.++.|.++|.+..|..++++.+.... +. . .....++|. .+..+.+.|+|++|.+|+
T Consensus        43 ~vD~yg~~lviq~~~~~~~~~~~~i~~al~~~~p~~~~i~~~~~~~-g~-~-~~~~~l~G~~~~~~~~v~E~Gl~f~vdl  119 (317)
T d2b78a2          43 TIDCYGDFVLFSWYNSFVYQIRDEIVAAFRQVYPNFLGAYEKIRFK-GI-D-NVSAHLYGQEAPEQFLILENGISYNVFL  119 (317)
T ss_dssp             EEEEETTEEEEEECSHHHHHTHHHHHHHHHHHSTTCSEEEEEECC-------CCEEEEEESCCCSSEEEEETTEEEEECS
T ss_pred             EEEEECCEEEEEECChHHHHHHHHHHHHHHHHhhhhheeeehhhhc-cc-c-ccceEEecCCCCcceeeeeCCEEEEEEc
Confidence            589999999999754 577889999999999999999998875432 11 1 123455664 444567789999999998


Q ss_pred             cc-----eeecCcChHHHH-HHHhhccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCC-
Q psy16898        141 SK-----VYWNSRLSTEHE-RVTKEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVK-  212 (324)
Q Consensus       141 ~~-----~f~~~r~~~e~~-~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~-  212 (324)
                      ..     +|.++|   +.+ ++++.+.+|++|||+|||+|+||+.+++.|+ +|+++|+|+.+++.+++|++.|+  +. 
T Consensus       120 ~~g~ktGlflDqR---~~r~~l~~~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~--l~~  194 (317)
T d2b78a2         120 NDGLMTGIFLDQR---QVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANH--LDM  194 (317)
T ss_dssp             SSSSCCSSCGGGH---HHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTT--CCC
T ss_pred             ccccccCCcHHHH---HHHHHHHHHhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhc--ccC
Confidence            75     678887   654 4677888999999999999999999999888 89999999999999999999999  85 


Q ss_pred             CCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHH------HHHHHhccchhhcCCCCCCCEEE
Q psy16898        213 TPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVE------YVRYLKVLTREEFGKLSRPPVLY  286 (324)
Q Consensus       213 ~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~------~l~~~~~l~~~~~~~~~~~g~vh  286 (324)
                      .+++++++|+++++.....+              +.+||+||+|||.++..      ....+..|-...++.+++||++.
T Consensus       195 ~~~~~i~~d~~~~l~~~~~~--------------~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~  260 (317)
T d2b78a2         195 ANHQLVVMDVFDYFKYARRH--------------HLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLII  260 (317)
T ss_dssp             TTEEEEESCHHHHHHHHHHT--------------TCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             cceEEEEccHHHHHHHHHhh--------------cCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            58999999999999876543              35799999999975421      11111111111122344568888


Q ss_pred             EEEcccC-CChhHHhHhhhcCCCceEEEEeecccCCCCC
Q psy16898        287 LYCFLPK-MDLETKKKIKSYDPSYATLIRGIRRLSSDGP  324 (324)
Q Consensus       287 ~y~f~~~-~~~~~~~~v~~y~~~~~~~i~~~~~~~~d~~  324 (324)
                      +.|+++. +..++.+.+..-......++..+..+++|||
T Consensus       261 ~~scs~~~~~~~f~~~v~~a~~~~~~~~~~~~~~~~DfP  299 (317)
T d2b78a2         261 ASTNAANMTVSQFKKQIEKGFGKQKHTYLDLQQLPSDFA  299 (317)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHTTCCCEEEEEECCCTTSC
T ss_pred             EEeCCccCCHHHHHHHHHHHHHHcCCeEEEeccCCCCCC
Confidence            7777664 5566677775433444556778889999998

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=5.2e-30  Score=239.11  Aligned_cols=246  Identities=20%  Similarity=0.207  Sum_probs=188.7

Q ss_pred             CC-ceeEEECCEEEEEeCc-hhhhhHHHHHHHHHhhCCCceEEEEcCCCCCcccc--cceeeEEccCCCeEEEEEeCCeE
Q psy16898         60 AM-SSFTSVGHIVHCNLRE-ELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYR--NFQMELLAGKDCMVTMHKENGCT  135 (324)
Q Consensus        60 ~~-~~~d~~G~i~vi~~~~-~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~~--~~~~~~l~G~~~~~~~~~e~g~~  135 (324)
                      +| --.|+||+++++++.+ .+.++++.|.++|.+..|.+++|+.+.+.......  .....++.|..+..+++.|+|+.
T Consensus        37 lpGl~vD~y~~~~vvq~~~~~~e~~~~~i~~aL~~~~~~~~~i~~r~~~~~r~~~~l~~~~~~l~g~~~~~~~v~e~~~~  116 (324)
T d2as0a2          37 LPGLIVDRFNDIASLQISSAGMERFKLDVAEAIMEVEPGIETVFEKNTGRSRRREGLPEIERVLLGKEKYRTIIQEGRAK  116 (324)
T ss_dssp             CTTEEEEEETTEEEEEECCHHHHTTHHHHHHHHHHHCTTCCEEEEEECSHHHHHTTCCCEEEEEEESCCCEEEEEETTEE
T ss_pred             CCCEEEEEECCEEEEEeCCHHHHHHHHHHHHHHHHhcccceeeeeeccchhhhhcCCchhheeeccCCCceEEEEcCCEE
Confidence            44 3569999999999865 57788899999999999889999988654321111  22456777887777888999999


Q ss_pred             EEEeccc----eeecCcChHHHHHHHh-hccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCC
Q psy16898        136 FKMDFSK----VYWNSRLSTEHERVTK-EVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNER  209 (324)
Q Consensus       136 f~id~~~----~f~~~r~~~e~~~~~~-~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~  209 (324)
                      |.++...    +|.+++   +.++.+. .+++|++|||+|||+|++|+.+|+.|+ +|+++|+|+.+++.+++|++.|+ 
T Consensus       117 ~~~~~~~~~tG~flDqr---~~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ng-  192 (324)
T d2as0a2         117 FIVDMRGQKTGFFLDQR---ENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNG-  192 (324)
T ss_dssp             EEEESSSSSSCCCSTTH---HHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-
T ss_pred             EEecccccccCcccchh---hHHHHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcC-
Confidence            9998754    677777   6555554 467899999999999999999999887 99999999999999999999999 


Q ss_pred             CCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH---HHHHHHhcc---chhhcCCCCCCC
Q psy16898        210 QVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV---EYVRYLKVL---TREEFGKLSRPP  283 (324)
Q Consensus       210 ~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~---~~l~~~~~l---~~~~~~~~~~~g  283 (324)
                       +.++++++++|+.+++......              +.+||.||+|||..+.   ....+.+.|   -...+..+++||
T Consensus       193 -l~~~~~~~~~d~~~~~~~~~~~--------------~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG  257 (324)
T d2as0a2         193 -VEDRMKFIVGSAFEEMEKLQKK--------------GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGG  257 (324)
T ss_dssp             -CGGGEEEEESCHHHHHHHHHHT--------------TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred             -CCccceeeechhhhhhHHHHhc--------------cCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence             9778999999999988765542              3569999999998532   111111111   112234455679


Q ss_pred             EEEEEEcccC-CChhHHhHhh--hcCCCceEEEEe-ecccCCCCC
Q psy16898        284 VLYLYCFLPK-MDLETKKKIK--SYDPSYATLIRG-IRRLSSDGP  324 (324)
Q Consensus       284 ~vh~y~f~~~-~~~~~~~~v~--~y~~~~~~~i~~-~~~~~~d~~  324 (324)
                      ++.+++++.. +..++.+.+.  .-..++..++++ .+.+++|||
T Consensus       258 ~lv~~s~s~~~~~~~f~~~v~~a~~~~gr~~~~~~~~~~~~~DhP  302 (324)
T d2as0a2         258 ILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLEPYRTQAPDHP  302 (324)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEESSCBBCSCTTSC
T ss_pred             EEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEEeeecCCCCCCCC
Confidence            9988887776 4456667764  356888888886 579999998

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=3.1e-30  Score=240.04  Aligned_cols=241  Identities=17%  Similarity=0.137  Sum_probs=183.4

Q ss_pred             CC-ceeEEECCEEEEEeCc-hhhhhHHHHHHHHHhhCCCceEEEEcCCCCCccccc--ceeeEEccCCCeEEEEEeCCeE
Q psy16898         60 AM-SSFTSVGHIVHCNLRE-ELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRN--FQMELLAGKDCMVTMHKENGCT  135 (324)
Q Consensus        60 ~~-~~~d~~G~i~vi~~~~-~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~~~--~~~~~l~G~~~~~~~~~e~g~~  135 (324)
                      +| -.+|+||++++++... .+...++.|.++|...   +++|+.+.+...+..++  ...+++.|+.+..+.+.|+|++
T Consensus        41 lpGl~vD~y~~~~vvq~~~~~~e~~~~~i~~~L~~~---~~~i~~~~~~~~r~~egl~~~~~~l~g~~~~~~~v~E~G~~  117 (318)
T d1wxxa2          41 LPGLVVDYYAGHAVVQATAHAWEGLLPQVAEALRPH---VQSVLAKNDARTRELEGLPLYVRPLLGEVPERVQVQEGRVR  117 (318)
T ss_dssp             CTTEEEEEETTEEEEEECSHHHHTTHHHHHHHHGGG---CSEEEEEECCTHHHHTTCCCEEEEEESCCCSEEEEEETTEE
T ss_pred             CCCEEEEEECCEEEEEeCcHHHHHHHHHHHHHhccc---cceEEEecccchHhhcCCcceeeeecCCccceEEEEECCEE
Confidence            45 3579999999999754 5778889999998643   57888876543222232  2457889987666788999999


Q ss_pred             EEEeccc-----eeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy16898        136 FKMDFSK-----VYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQ  210 (324)
Q Consensus       136 f~id~~~-----~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~  210 (324)
                      |.+++..     +|.++|   +.+.+++. .+|++|||+|||+|++++++|+.+++|+++|+|+.+++.|++|++.|+  
T Consensus       118 f~v~l~~~~~tG~flDqr---~~r~~~~~-~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ng--  191 (318)
T d1wxxa2         118 YLVDLRAGQKTGAYLDQR---ENRLYMER-FRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNG--  191 (318)
T ss_dssp             EEEECSTTSCCCCCGGGH---HHHHHGGG-CCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTT--
T ss_pred             EEEechhccccccchhhh---hhHHHHHH-hCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcC--
Confidence            9999865     688888   66555554 468999999999999999999877799999999999999999999999  


Q ss_pred             CCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH------HHHHHHhccchhhcCCCCCCCE
Q psy16898        211 VKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV------EYVRYLKVLTREEFGKLSRPPV  284 (324)
Q Consensus       211 l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~------~~l~~~~~l~~~~~~~~~~~g~  284 (324)
                      ++ +++++++|+.+++......              +.+||.|++|||.++.      ........+-...+..+++||+
T Consensus       192 l~-~~~~i~~d~~~~~~~~~~~--------------~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~  256 (318)
T d1wxxa2         192 LG-NVRVLEANAFDLLRRLEKE--------------GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGI  256 (318)
T ss_dssp             CT-TEEEEESCHHHHHHHHHHT--------------TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred             CC-CcceeeccHHHHhhhhHhh--------------hcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence            96 7999999999998876542              3569999999998532      1111111111112234456699


Q ss_pred             EEEEEcccC-CChhHHhHhhh--cCCCceEEEEeecccCCCCC
Q psy16898        285 LYLYCFLPK-MDLETKKKIKS--YDPSYATLIRGIRRLSSDGP  324 (324)
Q Consensus       285 vh~y~f~~~-~~~~~~~~v~~--y~~~~~~~i~~~~~~~~d~~  324 (324)
                      +.+.+++.. +..++.+.+..  -..++.+++++...+++|||
T Consensus       257 Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~~~~~~~~DhP  299 (318)
T d1wxxa2         257 LATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVEKRGQPFDHP  299 (318)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEECCCTTSC
T ss_pred             EEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEEEecCCCCCCC
Confidence            887777765 55667777743  35778899999999999998

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.92  E-value=4.3e-24  Score=196.36  Aligned_cols=254  Identities=14%  Similarity=0.087  Sum_probs=165.2

Q ss_pred             eEEEEeeccCCChHHHHHhccCCCCCCceeEEECCEEEEEeCc-h-hhhhHHHHHHHHHhhCCCceEEEEcCCCCCcccc
Q psy16898         35 HAEVLLTYDNFSAEDILKAILPDNVAMSSFTSVGHIVHCNLRE-E-LIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYR  112 (324)
Q Consensus        35 ~~~~~~~y~~~~~~~~l~~~~p~~~~~~~~d~~G~i~vi~~~~-~-~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~~  112 (324)
                      ...+.|.-+.|+-.++|.. -    -....|+||+.++++..+ . +.+..   .+.++++   ...++.+.....+   
T Consensus        11 ~~p~~l~~~~w~dY~Lid~-G----~G~~ldrfG~~~vvrp~~~a~w~~~l---~~~~w~~---~~~~~~~~~~~~~---   76 (309)
T d2igta1          11 HVPVILESSGAGDFHLIDS-G----NGLKLEQYGDYRVVRPEAQALWRPLV---PDRVWQN---ADAIFTGDTDEDG---   76 (309)
T ss_dssp             EEEEEEEECCCTTEEEEEE-E----TTEEEEEETTEEEEEECTTCCSCCCS---CHHHHHT---CSEEEEECC---C---
T ss_pred             CCCeEeccCCCCCeEEEEC-C----CCcEEEeECCEEEEeeCchhhcCCCC---CHHHHHh---cCcEEecccccCC---
Confidence            3455677778887666643 1    245689999999999754 3 32322   2233432   3344433221111   


Q ss_pred             cceeeEEccCCCeEEEEEeCCeEEEEeccc-----eeecCcChHHHHHH----HhhccCCCEEEEEcCCCchhHHHHHhc
Q psy16898        113 NFQMELLAGKDCMVTMHKENGCTFKMDFSK-----VYWNSRLSTEHERV----TKEVREGDLVLDVFAGVGPFSIPAARR  183 (324)
Q Consensus       113 ~~~~~~l~G~~~~~~~~~e~g~~f~id~~~-----~f~~~r~~~e~~~~----~~~~~~g~~VLDl~~G~G~~al~~a~~  183 (324)
                      ....+...+..+....+.|+|++|.+++..     +|.+++   ++++.    +....++.+|||+|||+|.|++.+|+.
T Consensus        77 ~~~w~~~~~~~p~~~~v~e~gl~f~v~~~~~~~tG~f~dqr---~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~  153 (309)
T d2igta1          77 MGRWRFPKEALGETWPLSLLGVEFLGRFTAFRHVGVFPEQI---VHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA  153 (309)
T ss_dssp             CEEEECSSSCCCSEEEEEETTEEEEEECCSSSCCSCCGGGH---HHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT
T ss_pred             CCceeecCCCCCCeEEEEEeEEEEEEeccCCCccccccchh---HHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhC
Confidence            112222223323445678999999999876     688888   66553    334567899999999999999999999


Q ss_pred             CCEEEEEeCCHHHHHHHHHHHHHhCCCCCC-CeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH
Q psy16898        184 GAIVAANDLNPDSYAWLQASIRLNERQVKT-PISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV  262 (324)
Q Consensus       184 g~~V~avD~~~~a~~~a~~N~~~n~~~l~~-~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~  262 (324)
                      |++|++||.|+.+++.|++|+++|+  +.+ +++++++|+++++......              +.+||+||+|||.++.
T Consensus       154 GA~V~~VD~s~~al~~a~~N~~ln~--~~~~~~~~i~~D~~~~l~~~~~~--------------~~~fD~IilDPP~f~~  217 (309)
T d2igta1         154 GAEVTHVDASKKAIGWAKENQVLAG--LEQAPIRWICEDAMKFIQREERR--------------GSTYDIILTDPPKFGR  217 (309)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHHHT--CTTSCEEEECSCHHHHHHHHHHH--------------TCCBSEEEECCCSEEE
T ss_pred             CCeEEEEeChHHHHHHHHHhhhhhc--ccCCcEEEEeCCHHHhHHHHhhc--------------CCCCCEEEECCCcccc
Confidence            9999999999999999999999999  864 6999999999999876543              4679999999997531


Q ss_pred             ----------HHHHHHhccchhhcCCCCCCC-EEEEEEcccC-CChhHHhHhhh--cCCCceEEEEeecccCCCCC
Q psy16898        263 ----------EYVRYLKVLTREEFGKLSRPP-VLYLYCFLPK-MDLETKKKIKS--YDPSYATLIRGIRRLSSDGP  324 (324)
Q Consensus       263 ----------~~l~~~~~l~~~~~~~~~~~g-~vh~y~f~~~-~~~~~~~~v~~--y~~~~~~~i~~~~~~~~d~~  324 (324)
                                ..++.+..   ....++.++| .+.+.|++.. +...+.+.++.  ...+..+...+...+..|||
T Consensus       218 ~~~~~~~~~~~~~~~l~~---~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ag~~v~~~e~~~~e~g~p  290 (309)
T d2igta1         218 GTHGEVWQLFDHLPLMLD---ICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVASGELVIREAGLD  290 (309)
T ss_dssp             CTTCCEEEHHHHHHHHHH---HHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEEEEEEEEECCCSS
T ss_pred             cccchhHHHHHHHHHHHH---HHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcceeeEEecccCCCC
Confidence                      22222211   1111233345 4555555554 44455555543  23455566666655555554

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.3e-19  Score=169.80  Aligned_cols=147  Identities=18%  Similarity=0.253  Sum_probs=114.6

Q ss_pred             eeEEccCCCeEEEEEeCCeEEEEeccceeecCcChHHHHH--HHhhc--cCCCEEEEEcCCCchhHHHHHhcCCEEEEEe
Q psy16898        116 MELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHER--VTKEV--REGDLVLDVFAGVGPFSIPAARRGAIVAAND  191 (324)
Q Consensus       116 ~~~l~G~~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~--~~~~~--~~g~~VLDl~~G~G~~al~~a~~g~~V~avD  191 (324)
                      .+.+.|+..   .+..+|++|.+++..|||.+..++|...  +++.+  .++++|||||||+|+||+++|+++++|+|+|
T Consensus       165 ~~~~~g~~~---~~~~~g~~~~i~p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE  241 (358)
T d1uwva2         165 LETVSGEMP---WYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE  241 (358)
T ss_dssp             CEEEECCCC---EEEETTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEE
T ss_pred             EEeecCCce---EEecCCEEEEECCchhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEecc
Confidence            467788752   3456999999999999998887777663  44443  4788999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH-HHHHHHhc
Q psy16898        192 LNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV-EYVRYLKV  270 (324)
Q Consensus       192 ~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~-~~l~~~~~  270 (324)
                      .++.|++.|++|++.|+  +. |++++.+|+.+.+......              ...+|.||+|||+... +.+..+..
T Consensus       242 ~~~~ai~~A~~na~~n~--i~-n~~~~~~~~~~~~~~~~~~--------------~~~~d~vilDPPR~G~~~~~~~l~~  304 (358)
T d1uwva2         242 GVPALVEKGQQNARLNG--LQ-NVTFYHENLEEDVTKQPWA--------------KNGFDKVLLDPARAGAAGVMQQIIK  304 (358)
T ss_dssp             SCHHHHHHHHHHHHHTT--CC-SEEEEECCTTSCCSSSGGG--------------TTCCSEEEECCCTTCCHHHHHHHHH
T ss_pred             CcHHHHHHHHHhHHhcc--cc-cceeeecchhhhhhhhhhh--------------hccCceEEeCCCCccHHHHHHHHHH
Confidence            99999999999999999  87 8999999988765432211              2459999999999643 45555554


Q ss_pred             cchhhcCCCCCCCEEEEEEc
Q psy16898        271 LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       271 l~~~~~~~~~~~g~vh~y~f  290 (324)
                      +++.        -++++.|-
T Consensus       305 ~~~~--------~ivYVSCn  316 (358)
T d1uwva2         305 LEPI--------RIVYVSCN  316 (358)
T ss_dssp             HCCS--------EEEEEESC
T ss_pred             cCCC--------EEEEEeCC
Confidence            4432        35666653

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.74  E-value=7.4e-18  Score=139.46  Aligned_cols=110  Identities=21%  Similarity=0.244  Sum_probs=84.6

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      -+|.+|||+|||+|.+|+.++.+|+ +|+++|.|+.|++.+++|++.++  +.++++++++|+..++...          
T Consensus        13 ~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~--~~~~~~ii~~D~~~~l~~~----------   80 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTK--AENRFTLLKMEAERAIDCL----------   80 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTT--CGGGEEEECSCHHHHHHHB----------
T ss_pred             CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcc--cccchhhhccccccccccc----------
Confidence            3689999999999999999999987 99999999999999999999999  8878999999999987542          


Q ss_pred             cCCCCCCCCcccEEEECChhhhHHHHHHHhccchhhcCCCCCCCEEEEEEcc
Q psy16898        240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~  291 (324)
                             ..+||.|++|||+....+...+..+...  ..++++|++.+.+-.
T Consensus        81 -------~~~fDiIf~DPPy~~~~~~~~l~~i~~~--~~L~~~g~iiiE~~~  123 (152)
T d2esra1          81 -------TGRFDLVFLDPPYAKETIVATIEALAAK--NLLSEQVMVVCETDK  123 (152)
T ss_dssp             -------CSCEEEEEECCSSHHHHHHHHHHHHHHT--TCEEEEEEEEEEEET
T ss_pred             -------ccccceeEechhhccchHHHHHHHHHHC--CCcCCCeEEEEEeCC
Confidence                   2459999999998543333333222211  122345777665433

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.69  E-value=7.6e-17  Score=137.30  Aligned_cols=112  Identities=17%  Similarity=0.207  Sum_probs=87.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      ..+|.+|||||||+|.+|+.++.+|+ +|++||.|+.+++.+++|++.++  ..++++++++|+.+++......      
T Consensus        39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~--~~~~~~i~~~D~~~~l~~~~~~------  110 (182)
T d2fhpa1          39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITK--EPEKFEVRKMDANRALEQFYEE------  110 (182)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHHHHHHHT------
T ss_pred             hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccchhhhhhhccc------
Confidence            34789999999999999999999998 89999999999999999999998  7778999999999998775442      


Q ss_pred             ccCCCCCCCCcccEEEECChhhhH---HHHHHHhccchhhcCCCCCCCEEEEEEccc
Q psy16898        239 QSEGNSTGGTAVARVIMNLPATAV---EYVRYLKVLTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~a~---~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                              +..||.|++|||+...   ..++.+..  .   ..++++|++.+.+-..
T Consensus       111 --------~~~fDlIflDPPY~~~~~~~~l~~i~~--~---~~L~~~giIi~E~~~~  154 (182)
T d2fhpa1         111 --------KLQFDLVLLDPPYAKQEIVSQLEKMLE--R---QLLTNEAVIVCETDKT  154 (182)
T ss_dssp             --------TCCEEEEEECCCGGGCCHHHHHHHHHH--T---TCEEEEEEEEEEEETT
T ss_pred             --------CCCcceEEechhhhhhHHHHHHHHHHH--C---CCCCCCEEEEEEcCCC
Confidence                    3469999999998532   33443321  1   1123347776655443

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.68  E-value=4.2e-16  Score=132.70  Aligned_cols=119  Identities=18%  Similarity=0.212  Sum_probs=97.2

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +.+|++|||+|||+|.+++.+|+.+++|+|+|+++.+++.|++|++.++  +.++++++++|+.+.+...          
T Consensus        31 ~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~g--l~~~v~~~~gda~~~~~~~----------   98 (186)
T d1l3ia_          31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHG--LGDNVTLMEGDAPEALCKI----------   98 (186)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTT--CCTTEEEEESCHHHHHTTS----------
T ss_pred             CCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcC--CCcceEEEECchhhccccc----------
Confidence            5689999999999999999999988899999999999999999999999  9779999999998876542          


Q ss_pred             cCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhHhhhcC
Q psy16898        240 SEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSYD  306 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~y~  306 (324)
                              ..||.|+++.+.. ..++++.+.. |+++        |++.+++..........+..+.+.
T Consensus        99 --------~~~D~v~~~~~~~~~~~~~~~~~~~Lkpg--------G~lvi~~~~~e~~~~~~~~l~~~~  151 (186)
T d1l3ia_          99 --------PDIDIAVVGGSGGELQEILRIIKDKLKPG--------GRIIVTAILLETKFEAMECLRDLG  151 (186)
T ss_dssp             --------CCEEEEEESCCTTCHHHHHHHHHHTEEEE--------EEEEEEECBHHHHHHHHHHHHHTT
T ss_pred             --------CCcCEEEEeCccccchHHHHHHHHHhCcC--------CEEEEEeeccccHHHHHHHHHHcC
Confidence                    4599999998764 3456666665 7765        888888776655555555555543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=2.7e-16  Score=133.91  Aligned_cols=107  Identities=21%  Similarity=0.243  Sum_probs=82.9

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      -.+.+|||+|||+|.+|++++.+|+ +|++||.|+.+++.+++|++.++  .. +++++++|+.+++...          
T Consensus        42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~--~~-~~~ii~~d~~~~l~~~----------  108 (183)
T d2fpoa1          42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLK--AG-NARVVNSNAMSFLAQK----------  108 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT--CC-SEEEECSCHHHHHSSC----------
T ss_pred             cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhcc--cc-ceeeeeeccccccccc----------
Confidence            3788999999999999999999998 99999999999999999999888  75 7999999999887542          


Q ss_pred             cCCCCCCCCcccEEEECChhhhH---HHHHHHhccchhhcCCCCCCCEEEEEEccc
Q psy16898        240 SEGNSTGGTAVARVIMNLPATAV---EYVRYLKVLTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a~---~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                             ...||.|++|||+...   ..++.+..   .  ..+++++++.+.+-.+
T Consensus       109 -------~~~fDlIf~DPPY~~~~~~~~l~~l~~---~--~~L~~~~iIiiE~~~~  152 (183)
T d2fpoa1         109 -------GTPHNIVFVDPPFRRGLLEETINLLED---N--GWLADEALIYVESEVE  152 (183)
T ss_dssp             -------CCCEEEEEECCSSSTTTHHHHHHHHHH---T--TCEEEEEEEEEEEEGG
T ss_pred             -------ccccCEEEEcCccccchHHHHHHHHHH---C--CCCCCCeEEEEEecCc
Confidence                   2469999999998532   23333322   1  1122346777665444

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.61  E-value=2.2e-15  Score=126.75  Aligned_cols=84  Identities=20%  Similarity=0.285  Sum_probs=70.3

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .+.+|.+|||+|||+|.++++++++|++|+++|.|+.+++.+++|++.|+  +.+  ++...|+..++......      
T Consensus        38 ~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~--~~~--~v~~~~~d~~~~~~~~~------  107 (171)
T d1ws6a1          38 RYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTG--LGA--RVVALPVEVFLPEAKAQ------  107 (171)
T ss_dssp             HCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHT--CCC--EEECSCHHHHHHHHHHT------
T ss_pred             cccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhc--ccc--ceeeeehhccccccccc------
Confidence            46789999999999999999999999999999999999999999999999  864  56666766665443221      


Q ss_pred             ccCCCCCCCCcccEEEECChhh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                              ...||+|++|||+.
T Consensus       108 --------~~~fD~If~DPPY~  121 (171)
T d1ws6a1         108 --------GERFTVAFMAPPYA  121 (171)
T ss_dssp             --------TCCEEEEEECCCTT
T ss_pred             --------CCccceeEEccccc
Confidence                    24699999999974

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.60  E-value=4.7e-15  Score=132.42  Aligned_cols=138  Identities=17%  Similarity=0.187  Sum_probs=98.9

Q ss_pred             eEEEEeccceeecCcChHHHHH---HHhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy16898        134 CTFKMDFSKVYWNSRLSTEHER---VTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQ  210 (324)
Q Consensus       134 ~~f~id~~~~f~~~r~~~e~~~---~~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~  210 (324)
                      +...+|+...|-.-...+.+.-   +.+...+|++|||+|||+|.+++.+++.|++|+|+|+|+.|++.|++|++.|+  
T Consensus        89 ~~i~i~pg~aFGTG~H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~--  166 (254)
T d2nxca1          89 IPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNG--  166 (254)
T ss_dssp             EEEECCCC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTT--
T ss_pred             eEEEEccccccCccccchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcC--
Confidence            4456677665644444444432   22346799999999999999999999999999999999999999999999999  


Q ss_pred             CCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        211 VKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       211 l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                      +.  ++++++|+.+....                   ..||.|++|.... ..++++.+.. |+++        |++.+.
T Consensus       167 ~~--~~~~~~d~~~~~~~-------------------~~fD~V~ani~~~~l~~l~~~~~~~LkpG--------G~lilS  217 (254)
T d2nxca1         167 VR--PRFLEGSLEAALPF-------------------GPFDLLVANLYAELHAALAPRYREALVPG--------GRALLT  217 (254)
T ss_dssp             CC--CEEEESCHHHHGGG-------------------CCEEEEEEECCHHHHHHHHHHHHHHEEEE--------EEEEEE
T ss_pred             Cc--eeEEeccccccccc-------------------cccchhhhccccccHHHHHHHHHHhcCCC--------cEEEEE
Confidence            85  68899998764322                   3599999996543 3456666665 7765        888887


Q ss_pred             EcccCCChhHHhHh
Q psy16898        289 CFLPKMDLETKKKI  302 (324)
Q Consensus       289 ~f~~~~~~~~~~~v  302 (324)
                      .+.....+...+..
T Consensus       218 gil~~~~~~v~~~~  231 (254)
T d2nxca1         218 GILKDRAPLVREAM  231 (254)
T ss_dssp             EEEGGGHHHHHHHH
T ss_pred             ecchhhHHHHHHHH
Confidence            77665444444333

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.60  E-value=5.5e-15  Score=126.42  Aligned_cols=105  Identities=20%  Similarity=0.282  Sum_probs=82.7

Q ss_pred             HHhh--ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCC-CeEEEeccHHHHHHHHHHH
Q psy16898        156 VTKE--VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKT-PISATQKDARDFLQTDARA  232 (324)
Q Consensus       156 ~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~-~v~~~~~D~~~~~~~~~~~  232 (324)
                      +++.  ..++++|||+|||+|.+++.+++.+.+|+++|+|+.|++.+++|++.|+  +.. +++++.+|+.+.+.     
T Consensus        44 Li~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~--l~~~~i~~~~~d~~~~~~-----  116 (194)
T d1dusa_          44 LVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNN--LDNYDIRVVHSDLYENVK-----  116 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTT--CTTSCEEEEECSTTTTCT-----
T ss_pred             HHHhCCcCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhC--CccceEEEEEcchhhhhc-----
Confidence            4554  3578999999999999999999988899999999999999999999998  763 68999999875322     


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECChhhh-H----HHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNLPATA-V----EYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~a-~----~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                                    ...||.|++|||... .    .+++.+.. |+++        |.+++.+
T Consensus       117 --------------~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~  157 (194)
T d1dusa_         117 --------------DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN--------GEIWVVI  157 (194)
T ss_dssp             --------------TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE--------EEEEEEE
T ss_pred             --------------cCCceEEEEcccEEecchhhhhHHHHHHHhcCcC--------cEEEEEE
Confidence                          145999999999642 2    34555544 6664        7766543

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=5.5e-15  Score=133.19  Aligned_cols=107  Identities=21%  Similarity=0.163  Sum_probs=87.2

Q ss_pred             eCCeEEEEeccceeecCcChHHHHH--HHhhc-cCCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHH
Q psy16898        131 ENGCTFKMDFSKVYWNSRLSTEHER--VTKEV-REGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIR  205 (324)
Q Consensus       131 e~g~~f~id~~~~f~~~r~~~e~~~--~~~~~-~~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~  205 (324)
                      -.|+.|.+++.-  +.||..+|-..  ++... ..+.+|||+|||+|.+++.+|+  ..++|+|+|+|+.|++.|++|++
T Consensus        76 F~~~~~~v~~~V--lIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~  153 (274)
T d2b3ta1          76 FWSLPLFVSPAT--LIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ  153 (274)
T ss_dssp             ETTEEEECCTTS--CCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH
T ss_pred             EeeeEEEEeccc--cccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHH
Confidence            478889988764  57888888553  33333 3566899999999999999988  35699999999999999999999


Q ss_pred             HhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh
Q psy16898        206 LNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       206 ~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                      .++  ++ +++++.+|..+.+.                   ..+||+||+|||+..
T Consensus       154 ~~~--~~-~v~~~~~d~~~~~~-------------------~~~fDlIvsNPPYi~  187 (274)
T d2b3ta1         154 HLA--IK-NIHILQSDWFSALA-------------------GQQFAMIVSNPPYID  187 (274)
T ss_dssp             HHT--CC-SEEEECCSTTGGGT-------------------TCCEEEEEECCCCBC
T ss_pred             HhC--cc-cceeeecccccccC-------------------CCceeEEEecchhhh
Confidence            999  86 79999999876432                   135999999999954

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.54  E-value=3.6e-15  Score=128.72  Aligned_cols=74  Identities=28%  Similarity=0.306  Sum_probs=66.2

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      +|++|||+|||+|.+++.++.+|+ +|+|+|+++.+++.+++|++.++  +  +..++++|+.++               
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~--~--~~~~~~~d~~~~---------------  106 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK--G--KFKVFIGDVSEF---------------  106 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT--T--SEEEEESCGGGC---------------
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcC--C--CceEEECchhhh---------------
Confidence            688999999999999999999987 99999999999999999999888  6  489999998653               


Q ss_pred             CCCCCCCCcccEEEECChhh
Q psy16898        241 EGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP~~  260 (324)
                            ..+||.||+|||+.
T Consensus       107 ------~~~fD~Vi~nPP~~  120 (201)
T d1wy7a1         107 ------NSRVDIVIMNPPFG  120 (201)
T ss_dssp             ------CCCCSEEEECCCCS
T ss_pred             ------CCcCcEEEEcCccc
Confidence                  13499999999984

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.53  E-value=9e-15  Score=124.29  Aligned_cols=83  Identities=20%  Similarity=0.262  Sum_probs=71.1

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCC-CeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKT-PISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~-~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .|.+|||||||||.+|++++.+|+ +|+.||.|+.+++.+++|++..+  +.+ ...+.+.|+.+++.....        
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~--~~~~~~~~~~~d~~~~l~~~~~--------  112 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLK--CSSEQAEVINQSSLDFLKQPQN--------  112 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT--CCTTTEEEECSCHHHHTTSCCS--------
T ss_pred             ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhc--cccccccccccccccccccccc--------
Confidence            788999999999999999999999 99999999999999999999887  643 578889998887654211        


Q ss_pred             cCCCCCCCCcccEEEECChhhh
Q psy16898        240 SEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                             ...||+|++|||+..
T Consensus       113 -------~~~fDlIFlDPPY~~  127 (183)
T d2ifta1         113 -------QPHFDVVFLDPPFHF  127 (183)
T ss_dssp             -------SCCEEEEEECCCSSS
T ss_pred             -------CCcccEEEechhHhh
Confidence                   235999999999954

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.52  E-value=8.6e-14  Score=130.58  Aligned_cols=129  Identities=19%  Similarity=0.236  Sum_probs=101.6

Q ss_pred             EEEEeCCeEEEEecc------ceeecCcChHHHHHH--HhhccCCCEEEEEcCCCchhHHHHHh-cCC-EEEEEeCCHHH
Q psy16898        127 TMHKENGCTFKMDFS------KVYWNSRLSTEHERV--TKEVREGDLVLDVFAGVGPFSIPAAR-RGA-IVAANDLNPDS  196 (324)
Q Consensus       127 ~~~~e~g~~f~id~~------~~f~~~r~~~e~~~~--~~~~~~g~~VLDl~~G~G~~al~~a~-~g~-~V~avD~~~~a  196 (324)
                      +.++|++.++.+.-.      .+|+|+.+...|...  +....++.+|||++||+|.+|+.+|+ .|+ +|+++|+|+.|
T Consensus         2 ~~i~EG~~~i~vp~~~~~~~~~vFYNp~q~~NRDlsvl~~~~~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A   81 (375)
T d2dula1           2 IEVQEGKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDA   81 (375)
T ss_dssp             EEEEETTEEEEEC--------CCCCCGGGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHH
T ss_pred             eEEEeCcEEEEecCCCCCCCCCcccCHHHhhhhHHHHHHHHHhCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHH
Confidence            456788888887322      289999876666542  22334778999999999999998877 455 99999999999


Q ss_pred             HHHHHHHHHHhCCCCCC--------------CeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH
Q psy16898        197 YAWLQASIRLNERQVKT--------------PISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV  262 (324)
Q Consensus       197 ~~~a~~N~~~n~~~l~~--------------~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~  262 (324)
                      ++.+++|++.|+  +.+              .+.+.+.|+..++...                 +..||+|.+||..++.
T Consensus        82 ~~~i~~N~~lN~--~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~-----------------~~~fDvIDiDPfGs~~  142 (375)
T d2dula1          82 YELMKRNVMLNF--DGELRESKGRAILKGEKTIVINHDDANRLMAER-----------------HRYFHFIDLDPFGSPM  142 (375)
T ss_dssp             HHHHHHHHHHHC--CSCCEECSSEEEEESSSEEEEEESCHHHHHHHS-----------------TTCEEEEEECCSSCCH
T ss_pred             HHHHHHHHHhcC--ccccccccccccccccceeEeehhhhhhhhHhh-----------------cCcCCcccCCCCCCcH
Confidence            999999999998  642              4778899998877652                 2459999999998889


Q ss_pred             HHHHHHhc-cchh
Q psy16898        263 EYVRYLKV-LTRE  274 (324)
Q Consensus       263 ~~l~~~~~-l~~~  274 (324)
                      .|++++.. ++.+
T Consensus       143 pfldsAi~a~~~~  155 (375)
T d2dula1         143 EFLDTALRSAKRR  155 (375)
T ss_dssp             HHHHHHHHHEEEE
T ss_pred             HHHHHHHHHhccC
Confidence            99999987 6654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.51  E-value=5.5e-14  Score=123.10  Aligned_cols=113  Identities=15%  Similarity=0.086  Sum_probs=89.5

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .+++|++|||+|||+|.++..+++++++|+|+|+|+.|++.|++++..++  ++ ++.++++|+.++...          
T Consensus        13 ~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~--~~-~~~~~~~d~~~~~~~----------   79 (234)
T d1xxla_          13 ECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKG--VE-NVRFQQGTAESLPFP----------   79 (234)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHT--CC-SEEEEECBTTBCCSC----------
T ss_pred             CCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccc--cc-ccccccccccccccc----------
Confidence            47899999999999999999999999999999999999999999999998  86 799999999864321          


Q ss_pred             ccCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhH
Q psy16898        239 QSEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKK  301 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~  301 (324)
                              ...||.|++.     .|. ...++..+.. |+++        |.+.+..+.....+....+
T Consensus        80 --------~~~fD~v~~~~~l~~~~d-~~~~l~~~~r~Lkpg--------G~~~~~~~~~~~~~~~~~~  131 (234)
T d1xxla_          80 --------DDSFDIITCRYAAHHFSD-VRKAVREVARVLKQD--------GRFLLVDHYAPEDPVLDEF  131 (234)
T ss_dssp             --------TTCEEEEEEESCGGGCSC-HHHHHHHHHHHEEEE--------EEEEEEEECBCSSHHHHHH
T ss_pred             --------ccccceeeeeceeecccC-HHHHHHHHHHeeCCC--------cEEEEEEcCCCCCHHHHHH
Confidence                    1459999884     333 3456666666 8876        8877766666555544333

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.45  E-value=2.2e-14  Score=123.18  Aligned_cols=70  Identities=24%  Similarity=0.266  Sum_probs=60.4

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .|++|||+|||+|.+++.+++.|+ +|+|+|+++.+++.|++|+.        ++.++++|+.++               
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~--------~~~~~~~D~~~l---------------  104 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG--------GVNFMVADVSEI---------------  104 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT--------TSEEEECCGGGC---------------
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc--------cccEEEEehhhc---------------
Confidence            689999999999999999999886 89999999999999988753        478999998652               


Q ss_pred             CCCCCCCCcccEEEECChhh
Q psy16898        241 EGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP~~  260 (324)
                            ..+||.||||||..
T Consensus       105 ------~~~fD~Vi~NPPfg  118 (197)
T d1ne2a_         105 ------SGKYDTWIMNPPFG  118 (197)
T ss_dssp             ------CCCEEEEEECCCC-
T ss_pred             ------CCcceEEEeCcccc
Confidence                  13599999999974

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.45  E-value=1.9e-13  Score=116.77  Aligned_cols=106  Identities=19%  Similarity=0.136  Sum_probs=83.4

Q ss_pred             HHhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        156 VTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       156 ~~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      .+..+.+| +|||+|||+|..++.++++|++|+|+|+|+.|++.++++++..+  ++ ++++...|+.++..        
T Consensus        25 ~~~~~~~g-rvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~--~~-~~~~~~~d~~~~~~--------   92 (198)
T d2i6ga1          25 AAKVVAPG-RTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEG--LD-NLQTDLVDLNTLTF--------   92 (198)
T ss_dssp             HHTTSCSC-EEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CT-TEEEEECCTTTCCC--------
T ss_pred             HcccCCCC-cEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhcc--cc-chhhhheecccccc--------
Confidence            34445554 99999999999999999999999999999999999999999888  87 79999999876432        


Q ss_pred             hhcccCCCCCCCCcccEEEECC------hhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNL------PATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~np------P~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                 ...||.|+++.      |.....++..+.. |+++        |++.+.++..
T Consensus        93 -----------~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pg--------G~~~~~~~~~  137 (198)
T d2i6ga1          93 -----------DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPG--------GYNLIVAAMD  137 (198)
T ss_dssp             -----------CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEE--------EEEEEEEEBC
T ss_pred             -----------cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCC--------cEEEEEEecC
Confidence                       24599999862      2223457777666 7765        7777777654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.45  E-value=2.3e-13  Score=118.19  Aligned_cols=108  Identities=23%  Similarity=0.142  Sum_probs=85.8

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .++++++|||+|||+|.++..+++.|++|+|+|+|+.+++.|+++++.++  .+ +++++++|+.++...          
T Consensus        12 ~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~--~~-~i~~~~~d~~~l~~~----------   78 (231)
T d1vl5a_          12 ALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNG--HQ-QVEYVQGDAEQMPFT----------   78 (231)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTT--CC-SEEEEECCC-CCCSC----------
T ss_pred             CCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccccc--cc-ccccccccccccccc----------
Confidence            47789999999999999999999999999999999999999999999988  76 899999998875311          


Q ss_pred             ccCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCCh
Q psy16898        239 QSEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDL  296 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~  296 (324)
                              ...||+|++.     .|+ ...++..+.. |+++        |++.+..+......
T Consensus        79 --------~~~fD~v~~~~~l~~~~d-~~~~l~~~~r~Lkpg--------G~l~i~~~~~~~~~  125 (231)
T d1vl5a_          79 --------DERFHIVTCRIAAHHFPN-PASFVSEAYRVLKKG--------GQLLLVDNSAPEND  125 (231)
T ss_dssp             --------TTCEEEEEEESCGGGCSC-HHHHHHHHHHHEEEE--------EEEEEEEEEBCSSH
T ss_pred             --------ccccccccccccccccCC-HHHHHHHHHHhcCCC--------cEEEEEeCCCCCCH
Confidence                    2459999885     333 3345666655 7776        88887777665443

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.44  E-value=7.9e-14  Score=123.95  Aligned_cols=102  Identities=17%  Similarity=0.174  Sum_probs=84.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +++|++|||+|||+|.+++.+|+.   +.+|+++|.++++++.|++|++.++  ..+++++.++|+.+.+.+        
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~--~~~nv~~~~~Di~~~~~~--------  152 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY--DIGNVRTSRSDIADFISD--------  152 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS--CCTTEEEECSCTTTCCCS--------
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc--CCCceEEEEeeeeccccc--------
Confidence            679999999999999999999983   4599999999999999999999876  556999999998764321        


Q ss_pred             hcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                                 ..||.|++|+|. ..++++.+.. |+++        |++.+|+-+
T Consensus       153 -----------~~fD~V~ld~p~-p~~~l~~~~~~LKpG--------G~lv~~~P~  188 (250)
T d1yb2a1         153 -----------QMYDAVIADIPD-PWNHVQKIASMMKPG--------SVATFYLPN  188 (250)
T ss_dssp             -----------CCEEEEEECCSC-GGGSHHHHHHTEEEE--------EEEEEEESS
T ss_pred             -----------ceeeeeeecCCc-hHHHHHHHHHhcCCC--------ceEEEEeCC
Confidence                       349999999998 4566776665 8876        888887543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=4e-13  Score=118.34  Aligned_cols=101  Identities=15%  Similarity=0.091  Sum_probs=81.2

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.+|++|||+|||+|.++..++++ |++|+|+|+|+.+++.|++++..++  +.++++++.+|+.++..           
T Consensus        31 l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~g--l~~~v~~~~~d~~~~~~-----------   97 (245)
T d1nkva_          31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELG--VSERVHFIHNDAAGYVA-----------   97 (245)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCCTTCCC-----------
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhh--ccccchhhhhHHhhccc-----------
Confidence            679999999999999999999885 7899999999999999999999999  88889999999987522           


Q ss_pred             ccCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        239 QSEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                              ..+||.|++.     .|+ ...++..+.. |+++        |.+.+...
T Consensus        98 --------~~~fD~v~~~~~~~~~~d-~~~~l~~~~r~LkPG--------G~l~i~~~  138 (245)
T d1nkva_          98 --------NEKCDVAACVGATWIAGG-FAGAEELLAQSLKPG--------GIMLIGEP  138 (245)
T ss_dssp             --------SSCEEEEEEESCGGGTSS-SHHHHHHHTTSEEEE--------EEEEEEEE
T ss_pred             --------cCceeEEEEEehhhccCC-HHHHHHHHHHHcCcC--------cEEEEEec
Confidence                    2459999873     222 1346777766 8876        77665443

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.40  E-value=4.9e-13  Score=119.99  Aligned_cols=110  Identities=16%  Similarity=0.167  Sum_probs=87.3

Q ss_pred             eCCeEEEEeccceeecCcChHHHHH--HHhhc--cCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHH
Q psy16898        131 ENGCTFKMDFSKVYWNSRLSTEHER--VTKEV--REGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIR  205 (324)
Q Consensus       131 e~g~~f~id~~~~f~~~r~~~e~~~--~~~~~--~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~  205 (324)
                      -.|..|.++..-  +.||..+|-..  +++..  .+..+|+|+|||+|.+++.+++. .++|+|+|+|+.|++.|++|++
T Consensus        77 F~~~~f~v~~~v--lIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~  154 (271)
T d1nv8a_          77 FMGLSFLVEEGV--FVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAE  154 (271)
T ss_dssp             ETTEEEECCTTS--CCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHH
T ss_pred             EeeeEEEEecCc--cCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHH
Confidence            478888888774  47888887652  22222  24568999999999999999874 5699999999999999999999


Q ss_pred             HhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh
Q psy16898        206 LNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       206 ~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                      .|+  +.+++.+..+|..+.....                 ..+||.||+|||+.+
T Consensus       155 ~~~--~~~~~~i~~~~~~~~~~~~-----------------~~~fDlIVsNPPYI~  191 (271)
T d1nv8a_         155 RHG--VSDRFFVRKGEFLEPFKEK-----------------FASIEMILSNPPYVK  191 (271)
T ss_dssp             HTT--CTTSEEEEESSTTGGGGGG-----------------TTTCCEEEECCCCBC
T ss_pred             HcC--CCceeEEeecccccccccc-----------------cCcccEEEEcccccC
Confidence            999  8878899999987754432                 135999999999853

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.37  E-value=8.5e-13  Score=113.60  Aligned_cols=103  Identities=20%  Similarity=0.215  Sum_probs=78.8

Q ss_pred             hhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        158 KEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       158 ~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.++++.+|||+|||+|.++..+++.|++|+|+|+|+.|++.|++++...+  .  ++.++++|+.++...         
T Consensus        33 ~~l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~--~--~~~~~~~d~~~l~~~---------   99 (226)
T d1ve3a1          33 KYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE--S--NVEFIVGDARKLSFE---------   99 (226)
T ss_dssp             HSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--C--CCEEEECCTTSCCSC---------
T ss_pred             HhcCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcccc--c--ccccccccccccccc---------
Confidence            346788999999999999999999999999999999999999999998776  4  478899998875322         


Q ss_pred             cccCCCCCCCCcccEEEEC-----Ch-hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        238 SQSEGNSTGGTAVARVIMN-----LP-ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~n-----pP-~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                               ...||+|++.     .| .....++..+.. |+++        |.+.+...
T Consensus       100 ---------~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~Lkpg--------G~lii~~~  142 (226)
T d1ve3a1         100 ---------DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPS--------GKFIMYFT  142 (226)
T ss_dssp             ---------TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEE--------EEEEEEEE
T ss_pred             ---------CcCceEEEEecchhhCChhHHHHHHHHHHHHcCcC--------cEEEEEEc
Confidence                     2459999885     22 223345666655 7775        66655443

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.37  E-value=1.4e-12  Score=113.30  Aligned_cols=110  Identities=18%  Similarity=0.146  Sum_probs=86.0

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      .++++.+|||+|||+|..+..+++    ++++|+|+|+|+.|++.|+++++..+  ...++++.++|+.++..       
T Consensus        36 ~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~--~~~~~~~~~~d~~~~~~-------  106 (225)
T d1im8a_          36 FVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH--SEIPVEILCNDIRHVEI-------  106 (225)
T ss_dssp             HCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC--CSSCEEEECSCTTTCCC-------
T ss_pred             hcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc--ccchhhhccchhhcccc-------
Confidence            467899999999999999999987    47799999999999999999998777  65678999999876422       


Q ss_pred             hhhcccCCCCCCCCcccEEEEC------ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhH
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMN------LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLET  298 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~n------pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~  298 (324)
                                   ..+|.|++.      ++.....+++.+.. |+++        |.+.+.++.....+..
T Consensus       107 -------------~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~Lkpg--------G~li~~~~~~~~~~~~  156 (225)
T d1im8a_         107 -------------KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPN--------GVLVLSEKFRFEDTKI  156 (225)
T ss_dssp             -------------CSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEE--------EEEEEEEECCCSSHHH
T ss_pred             -------------ccceeeEEeeeccccChhhHHHHHHHHHHhCCCC--------ceeecccccccccchh
Confidence                         348888885      33345567777766 8886        8777777666555433

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.36  E-value=1.3e-12  Score=109.77  Aligned_cols=67  Identities=15%  Similarity=-0.007  Sum_probs=56.3

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCC-----------CCCeEEEeccHHHHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQV-----------KTPISATQKDARDFLQT  228 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l-----------~~~v~~~~~D~~~~~~~  228 (324)
                      +.+|.+|||+|||+|..++.+|++|++|+|+|+|+.|++.|+++++..+  .           ...+.++++|+.+....
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~l~~~   95 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQP--HITSQGDFKVYAAPGIEIWCGDFFALTAR   95 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCS--EEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhcccc--chhhhhhhhhccccccceecccccccccc
Confidence            6689999999999999999999999999999999999999999886432  1           12467888888775544

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.34  E-value=1.9e-12  Score=116.31  Aligned_cols=104  Identities=12%  Similarity=0.057  Sum_probs=83.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.+|.+|||+|||+|.++..++++ |++|+|+|+|+.+++.|++++...+  +.++++++++|+.++...          
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~g--l~~~v~~~~~d~~~l~~~----------  132 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFLEIPCE----------  132 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHT--CTTTEEEEECCTTSCSSC----------
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccc--cccccccccccccccccc----------
Confidence            568999999999999999999985 7899999999999999999999999  888999999999875321          


Q ss_pred             ccCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        239 QSEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                              ...||+|++.     .|. ...++..+.. |+++        |.+.+..+..
T Consensus       133 --------~~sfD~V~~~~~l~h~~d-~~~~l~~~~~~Lkpg--------G~l~~~~~~~  175 (282)
T d2o57a1         133 --------DNSYDFIWSQDAFLHSPD-KLKVFQECARVLKPR--------GVMAITDPMK  175 (282)
T ss_dssp             --------TTCEEEEEEESCGGGCSC-HHHHHHHHHHHEEEE--------EEEEEEEEEE
T ss_pred             --------ccccchhhccchhhhccC-HHHHHHHHHHhcCCC--------cEEEEEEeec
Confidence                    2459999884     343 2345666655 8876        7776665444

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.33  E-value=7.1e-13  Score=118.51  Aligned_cols=107  Identities=19%  Similarity=0.177  Sum_probs=84.6

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.+|++|||+|||+|.+++.+|+.   ..+|+++|+++++++.|++|++.......+++.+.++|+.+....        
T Consensus        94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~--------  165 (264)
T d1i9ga_          94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP--------  165 (264)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC--------
T ss_pred             CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccccc--------
Confidence            679999999999999999999984   459999999999999999999864210345899999998763111        


Q ss_pred             hcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                                ...||.|++|+|. +.+.++.+.. ||++        |.+.+|+=+-.
T Consensus       166 ----------~~~fDaV~ldlp~-P~~~l~~~~~~LkpG--------G~lv~~~P~i~  204 (264)
T d1i9ga_         166 ----------DGSVDRAVLDMLA-PWEVLDAVSRLLVAG--------GVLMVYVATVT  204 (264)
T ss_dssp             ----------TTCEEEEEEESSC-GGGGHHHHHHHEEEE--------EEEEEEESSHH
T ss_pred             ----------CCCcceEEEecCC-HHHHHHHHHhccCCC--------CEEEEEeCccC
Confidence                      2459999999998 5677777766 8876        88887764443

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.33  E-value=1.4e-11  Score=107.71  Aligned_cols=139  Identities=15%  Similarity=0.127  Sum_probs=97.6

Q ss_pred             eEEccCCCeEEEEEeCCeEEEEeccceeecCcChHHHHHHHhh-----ccCCCEEEEEcCCCchhHHHHHhc---CCEEE
Q psy16898        117 ELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKE-----VREGDLVLDVFAGVGPFSIPAARR---GAIVA  188 (324)
Q Consensus       117 ~~l~G~~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~~~~~-----~~~g~~VLDl~~G~G~~al~~a~~---g~~V~  188 (324)
                      +-++|+.    ..+..|..|+.      |||+-+.--..++..     +++|++|||+|||+|+++.++|+.   ..+|+
T Consensus        33 ~~vyge~----~~~~~~~e~R~------w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~  102 (227)
T d1g8aa_          33 QRVYGER----VIKWEGEEYRI------WNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIF  102 (227)
T ss_dssp             CCCTTCC----EEEETTEEEEE------CCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEE
T ss_pred             CcccCce----EEEcCCeeEEE------ECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEE
Confidence            3457774    23456666665      777655433334432     569999999999999999999984   45999


Q ss_pred             EEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChh--hhHHHHH
Q psy16898        189 ANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPA--TAVEYVR  266 (324)
Q Consensus       189 avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~--~a~~~l~  266 (324)
                      |+|+++.+++.++++++..+     ++..+..|+........               ....+|.|++|+|.  ....++.
T Consensus       103 aVD~s~~~l~~a~~~a~~~~-----~~~~i~~d~~~~~~~~~---------------~~~~vD~i~~d~~~~~~~~~~l~  162 (227)
T d1g8aa_         103 GIEFSPRVLRELVPIVEERR-----NIVPILGDATKPEEYRA---------------LVPKVDVIFEDVAQPTQAKILID  162 (227)
T ss_dssp             EEESCHHHHHHHHHHHSSCT-----TEEEEECCTTCGGGGTT---------------TCCCEEEEEECCCSTTHHHHHHH
T ss_pred             EEeCcHHHHHHHHHHHHhcC-----CceEEEEECCCcccccc---------------cccceEEEEEEccccchHHHHHH
Confidence            99999999999999887544     67888888865322110               02348999999765  3456777


Q ss_pred             HHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        267 YLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       267 ~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                      .+.. |+++        |.+.+..+++.
T Consensus       163 ~~~~~Lkpg--------G~lvi~~ka~~  182 (227)
T d1g8aa_         163 NAEVYLKRG--------GYGMIAVKSRS  182 (227)
T ss_dssp             HHHHHEEEE--------EEEEEEEEGGG
T ss_pred             HHHHhcccC--------CeEEEEEECCc
Confidence            7766 7876        77776655543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.33  E-value=2.1e-12  Score=113.29  Aligned_cols=91  Identities=21%  Similarity=0.183  Sum_probs=73.9

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .++++|||+|||+|.+++.++++|++|+|+|+|+.|++.|+++++.++  +  +++++++|+.++..             
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~--~--~i~~~~~d~~~l~~-------------  102 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERN--L--KIEFLQGDVLEIAF-------------  102 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--C--CCEEEESCGGGCCC-------------
T ss_pred             CCCCEEEEeCCCCCccchhhcccceEEEEEeecccccccccccccccc--c--cchheehhhhhccc-------------
Confidence            356799999999999999999999999999999999999999999887  5  59999999987532             


Q ss_pred             CCCCCCCCcccEEEEC------C-hhhhHHHHHHHhc-cchh
Q psy16898        241 EGNSTGGTAVARVIMN------L-PATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~n------p-P~~a~~~l~~~~~-l~~~  274 (324)
                            ...||.|++-      + +.....++..+.. |+++
T Consensus       103 ------~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkpg  138 (251)
T d1wzna1         103 ------KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPG  138 (251)
T ss_dssp             ------CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             ------ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCC
Confidence                  1359999873      1 1123457777766 7776

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.32  E-value=1.4e-12  Score=116.88  Aligned_cols=103  Identities=17%  Similarity=0.218  Sum_probs=85.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.+|++|||+|||+|.+++.+|+.   +++|+++|+++++++.|++|++..+  +.+++.+...|+.....         
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g--~~~~v~~~~~d~~~~~~---------  169 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG--LIERVTIKVRDISEGFD---------  169 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT--CGGGEEEECCCGGGCCS---------
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc--cccCcEEEecccccccc---------
Confidence            679999999999999999999983   4699999999999999999999998  87789999999643211         


Q ss_pred             hcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                ...||.|++|.|. ..++++.+.. ||++        |.+.+|+-+-
T Consensus       170 ----------~~~~D~V~~d~p~-p~~~l~~~~~~LKpG--------G~lv~~~P~~  207 (266)
T d1o54a_         170 ----------EKDVDALFLDVPD-PWNYIDKCWEALKGG--------GRFATVCPTT  207 (266)
T ss_dssp             ----------CCSEEEEEECCSC-GGGTHHHHHHHEEEE--------EEEEEEESSH
T ss_pred             ----------ccceeeeEecCCC-HHHHHHHHHhhcCCC--------CEEEEEeCcc
Confidence                      2359999999998 5667777766 8876        8998887543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.1e-12  Score=116.50  Aligned_cols=86  Identities=12%  Similarity=0.118  Sum_probs=68.8

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +..++||+|||+|.+++.+|++  +++|+|+|+|+.|++.|++|++.|+  +.+++.+++.+....+.....        
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~--l~~~~~~~~~~~~~~~~~~~~--------  130 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN--LSDLIKVVKVPQKTLLMDALK--------  130 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTCSSTTTST--------
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhC--CCcceeeeeeccHHhhhhhhh--------
Confidence            3458999999999999999884  7899999999999999999999999  998999998876543322110        


Q ss_pred             cCCCCCCCCcccEEEECChhhh
Q psy16898        240 SEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                          ......||.||+|||+.+
T Consensus       131 ----~~~~~~fD~ivsNPPY~~  148 (250)
T d2h00a1         131 ----EESEIIYDFCMCNPPFFA  148 (250)
T ss_dssp             ----TCCSCCBSEEEECCCCC-
T ss_pred             ----hcccCceeEEEecCcccc
Confidence                011246999999999964

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.31  E-value=3.7e-12  Score=111.91  Aligned_cols=90  Identities=13%  Similarity=0.092  Sum_probs=72.6

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE  241 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~  241 (324)
                      ++++|||+|||+|.+++.++++|.+|+|+|+|+.|++.|+++++.++  +  +++++++|+.++..              
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~--~--~v~~~~~d~~~~~~--------------   98 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQG--L--KPRLACQDISNLNI--------------   98 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTT--C--CCEEECCCGGGCCC--------------
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccC--c--cceeeccchhhhcc--------------
Confidence            56799999999999999999999999999999999999999998887  5  59999999987521              


Q ss_pred             CCCCCCCcccEEEEC------C--hhhhHHHHHHHhc-cchh
Q psy16898        242 GNSTGGTAVARVIMN------L--PATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       242 ~~~~~~~~fD~Vi~n------p--P~~a~~~l~~~~~-l~~~  274 (324)
                           ...||.|++-      .  |.....++..+.. |+++
T Consensus        99 -----~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  135 (246)
T d1y8ca_          99 -----NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG  135 (246)
T ss_dssp             -----SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEE
T ss_pred             -----cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCC
Confidence                 1359999872      1  2223346676766 7775

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.4e-12  Score=118.34  Aligned_cols=105  Identities=14%  Similarity=0.146  Sum_probs=81.2

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCC--------CCCCCeEEEeccHHHHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNER--------QVKTPISATQKDARDFLQT  228 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~--------~l~~~v~~~~~D~~~~~~~  228 (324)
                      +.+|++|||+|||+|.+++.+|+.   ..+|+++|+++++++.|++|++..+.        ...+++.+.++|+.+....
T Consensus        96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~  175 (324)
T d2b25a1          96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  175 (324)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence            679999999999999999999983   45999999999999999999985310        0345899999998765433


Q ss_pred             HHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        229 DARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                      ...                ..||.|++|+|. +.+.++.+.. ||++        |.+.+|+
T Consensus       176 ~~~----------------~~fD~V~LD~p~-P~~~l~~~~~~LKpG--------G~lv~~~  212 (324)
T d2b25a1         176 IKS----------------LTFDAVALDMLN-PHVTLPVFYPHLKHG--------GVCAVYV  212 (324)
T ss_dssp             ---------------------EEEEEECSSS-TTTTHHHHGGGEEEE--------EEEEEEE
T ss_pred             cCC----------------CCcceEeecCcC-HHHHHHHHHHhccCC--------CEEEEEe
Confidence            211                349999999997 5667777766 8876        8888775

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.2e-11  Score=107.83  Aligned_cols=108  Identities=15%  Similarity=0.001  Sum_probs=80.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCC--------------CCCCCeEEEeccHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNER--------------QVKTPISATQKDARDF  225 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~--------------~l~~~v~~~~~D~~~~  225 (324)
                      +.++.+|||+|||+|..++.+|++|++|+|+|+|+.|++.|+++......              ....+++++++|+.++
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l  122 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL  122 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence            45788999999999999999999999999999999999999887653210              0113689999998876


Q ss_pred             HHHHHHHhhhhhcccCCCCCCCCcccEEEEC------ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        226 LQTDARAHLVRWSQSEGNSTGGTAVARVIMN------LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~n------pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                      ....                 ...||.|+.-      +|.....++..+.. |+++        |.+.+.+|..
T Consensus       123 ~~~~-----------------~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkpg--------G~~~l~~~~~  171 (229)
T d2bzga1         123 PRTN-----------------IGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKK--------FQYLLCVLSY  171 (229)
T ss_dssp             GGSC-----------------CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE--------EEEEEEEEEC
T ss_pred             cccc-----------------cCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCc--------ceEEEEEccc
Confidence            4331                 2358888742      44545567777766 7776        7666666554

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.25  E-value=2.1e-11  Score=105.19  Aligned_cols=104  Identities=14%  Similarity=0.054  Sum_probs=78.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +++|++|||+|||+|+++..+|+.  ..+|+|+|+|+.|++.|+++++..+     ++.++.+|+........       
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~-----ni~~i~~d~~~~~~~~~-------  121 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN-----NIIPLLFDASKPWKYSG-------  121 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS-----SEEEECSCTTCGGGTTT-------
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC-----CceEEEeeccCcccccc-------
Confidence            679999999999999999999983  3499999999999999999988655     79999999876322110       


Q ss_pred             cccCCCCCCCCcccEEEECCh--hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        238 SQSEGNSTGGTAVARVIMNLP--ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP--~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                              ....+|.|+.|.+  .....++..+.. |+++        |.+.+....
T Consensus       122 --------~~~~vd~v~~~~~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~~  162 (209)
T d1nt2a_         122 --------IVEKVDLIYQDIAQKNQIEILKANAEFFLKEK--------GEVVIMVKA  162 (209)
T ss_dssp             --------TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEE--------EEEEEEEEH
T ss_pred             --------ccceEEEEEecccChhhHHHHHHHHHHHhccC--------CeEEEEEEc
Confidence                    0134778878864  445567777765 8876        777655443

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.23  E-value=2.5e-11  Score=109.37  Aligned_cols=103  Identities=14%  Similarity=0.135  Sum_probs=80.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +++|++|||+|||+|.+++.++++ |++|+|+|+|+.+++.|++.++..+  +..++.+...|..++             
T Consensus        50 l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~--l~~~~~~~~~d~~~~-------------  114 (280)
T d2fk8a1          50 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASID--TNRSRQVLLQGWEDF-------------  114 (280)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCGGGC-------------
T ss_pred             CCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhc--cccchhhhhhhhhhh-------------
Confidence            569999999999999999999975 8999999999999999999999988  877889998887653             


Q ss_pred             ccCCCCCCCCcccEEEEC-----Chhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        239 QSEGNSTGGTAVARVIMN-----LPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~n-----pP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                              ...||.|++-     .+.. -..|++.+.. |+++        |.+.+..+...
T Consensus       115 --------~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkpg--------G~~~i~~i~~~  160 (280)
T d2fk8a1         115 --------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD--------GRMTVQSSVSY  160 (280)
T ss_dssp             --------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT--------CEEEEEEEECC
T ss_pred             --------ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCC--------ceEEEEEeecc
Confidence                    1349999873     2221 2346666655 6664        88877765543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.23  E-value=1.5e-11  Score=108.59  Aligned_cols=97  Identities=16%  Similarity=0.057  Sum_probs=74.4

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      ...++++|||+|||+|..+..+++.|. +|+|+|+|+.|++.|++.++.++  ...++.+.++|+......         
T Consensus        21 ~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~--~~~~v~f~~~D~~~~~~~---------   89 (252)
T d1ri5a_          21 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK--RRFKVFFRAQDSYGRHMD---------   89 (252)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSC--CSSEEEEEESCTTTSCCC---------
T ss_pred             hCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcC--CCcceEEEEcchhhhccc---------
Confidence            367899999999999999999999775 89999999999999999988777  555799999998542111         


Q ss_pred             cccCCCCCCCCcccEEEEC--------ChhhhHHHHHHHhc-cchh
Q psy16898        238 SQSEGNSTGGTAVARVIMN--------LPATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~n--------pP~~a~~~l~~~~~-l~~~  274 (324)
                              ....||+|++.        ++.....++..+.. |+++
T Consensus        90 --------~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~g  127 (252)
T d1ri5a_          90 --------LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG  127 (252)
T ss_dssp             --------CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred             --------ccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCC
Confidence                    12459999885        22223356666655 7765

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.2e-11  Score=107.21  Aligned_cols=93  Identities=16%  Similarity=0.100  Sum_probs=73.1

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRG-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .++.+|||+|||+|.++..+++++ .+|+|+|+|+.|++.|++++..++  .. +++++++|+.++...           
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~--~~-~~~f~~~d~~~~~~~-----------  124 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG--KR-VRNYFCCGLQDFTPE-----------  124 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG--GG-EEEEEECCGGGCCCC-----------
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccc--cc-ccccccccccccccc-----------
Confidence            467899999999999999987654 499999999999999999998877  65 789999999885322           


Q ss_pred             cCCCCCCCCcccEEEEC-----Chhh-hHHHHHHHhc-cchh
Q psy16898        240 SEGNSTGGTAVARVIMN-----LPAT-AVEYVRYLKV-LTRE  274 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~n-----pP~~-a~~~l~~~~~-l~~~  274 (324)
                             ...||.|++.     .|.. ..+++..+.. |+++
T Consensus       125 -------~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~  159 (222)
T d2ex4a1         125 -------PDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN  159 (222)
T ss_dssp             -------SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             -------cccccccccccccccchhhhhhhHHHHHHHhcCCc
Confidence                   2469999884     3322 2457777766 7765

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.19  E-value=5.4e-11  Score=102.27  Aligned_cols=101  Identities=13%  Similarity=0.154  Sum_probs=80.8

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      ++..|||+|||+|.+++.+|+.  ...++|+|+++.++..|.++++.++  ++ |+.++++|+..+.....         
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~--l~-Nv~~~~~Da~~l~~~~~---------   96 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE--AQ-NVKLLNIDADTLTDVFE---------   96 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC--CS-SEEEECCCGGGHHHHCC---------
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHh--cc-CchhcccchhhhhcccC---------
Confidence            3558999999999999999984  5799999999999999999999999  87 89999999998764321         


Q ss_pred             cCCCCCCCCcccEEEECChh----h--------hHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        240 SEGNSTGGTAVARVIMNLPA----T--------AVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~----~--------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                             ...+|.|.++-|.    .        ..+|++.+.. |+++        |.||+.+
T Consensus        97 -------~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lkpg--------G~l~i~T  144 (204)
T d2fcaa1          97 -------PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG--------GSIHFKT  144 (204)
T ss_dssp             -------TTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS--------CEEEEEE
T ss_pred             -------chhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCC--------cEEEEEE
Confidence                   2458888775333    1        1368888877 7775        8888764

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.19  E-value=1.2e-10  Score=101.76  Aligned_cols=139  Identities=16%  Similarity=0.105  Sum_probs=91.9

Q ss_pred             eEEccCCCeEEEEEeCCeEEEEeccceeecCcChHHHHHHHh---h--ccCCCEEEEEcCCCchhHHHHHhcC--CEEEE
Q psy16898        117 ELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTK---E--VREGDLVLDVFAGVGPFSIPAARRG--AIVAA  189 (324)
Q Consensus       117 ~~l~G~~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~~~~---~--~~~g~~VLDl~~G~G~~al~~a~~g--~~V~a  189 (324)
                      +.++|+.    ..+..+..|+.      |||+-+.--..+..   .  +++|.+|||+|||+|+++..+|+.+  ..|+|
T Consensus        34 ~~~y~e~----~~~~~~~e~r~------w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~a  103 (230)
T d1g8sa_          34 KKVYDEK----IIKIGDEEYRI------WNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYA  103 (230)
T ss_dssp             CCSSSCC----EEEETTEEEEE------CCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEE
T ss_pred             CCccCce----eeecCCceeee------ECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEE
Confidence            3445654    22344555554      67765432222322   2  5689999999999999999999853  59999


Q ss_pred             EeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECCh--hhhHHHHHH
Q psy16898        190 NDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLP--ATAVEYVRY  267 (324)
Q Consensus       190 vD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP--~~a~~~l~~  267 (324)
                      +|+|+.|++.|++++..++     ++.++.+|+.........               ...+|.++.+..  .....++..
T Consensus       104 VDiS~~~i~~a~~~a~~~~-----ni~~i~~d~~~~~~~~~~---------------~~~v~~i~~~~~~~~~~~~~l~~  163 (230)
T d1g8sa_         104 IEYAPRIMRELLDACAERE-----NIIPILGDANKPQEYANI---------------VEKVDVIYEDVAQPNQAEILIKN  163 (230)
T ss_dssp             EESCHHHHHHHHHHTTTCT-----TEEEEECCTTCGGGGTTT---------------CCCEEEEEECCCSTTHHHHHHHH
T ss_pred             EeCcHHHHHHHHHHHhhhc-----ccceEEEeeccCcccccc---------------cceeEEeeccccchHHHHHHHHH
Confidence            9999999999999876544     688899998764332100               122555666653  334566777


Q ss_pred             Hhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        268 LKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       268 ~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                      +.. |+++        |.+.+......
T Consensus       164 ~~r~LKpg--------G~~~i~~k~~~  182 (230)
T d1g8sa_         164 AKWFLKKG--------GYGMIAIKARS  182 (230)
T ss_dssp             HHHHEEEE--------EEEEEEEEGGG
T ss_pred             HHHhcccC--------ceEEEEeeccc
Confidence            766 8876        77776655554

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.18  E-value=4.7e-11  Score=107.75  Aligned_cols=102  Identities=17%  Similarity=0.137  Sum_probs=80.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +++|++|||+|||+|.+++.+|+ .|++|+|+.+|+..++.|++.++..+  +.+++++..+|..++.            
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g--~~~~v~~~~~d~~~~~------------  125 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSE--NLRSKRVLLAGWEQFD------------  125 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCC--CCSCEEEEESCGGGCC------------
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhh--hhhhhHHHHhhhhccc------------
Confidence            67999999999999999999887 68999999999999999999998888  8889999999986531            


Q ss_pred             ccCCCCCCCCcccEEEEC-----Ch-hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        239 QSEGNSTGGTAVARVIMN-----LP-ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~n-----pP-~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                               ..||.|++-     .+ ..-..++..+.. |+++        |.+.++.++.
T Consensus       126 ---------~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkpg--------G~~~l~~i~~  169 (285)
T d1kpga_         126 ---------EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD--------GVMLLHTITG  169 (285)
T ss_dssp             ---------CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT--------CEEEEEEEEE
T ss_pred             ---------ccccceeeehhhhhcCchhHHHHHHHHHhhcCCC--------CcEEEEEEec
Confidence                     349988772     11 111346666655 6664        8877777764

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.17  E-value=6.2e-11  Score=107.25  Aligned_cols=103  Identities=15%  Similarity=0.109  Sum_probs=80.6

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +++|++|||+|||+|++++.+|+ .|++|+|+++|++.++.+++.++..+  +.+++++...|....             
T Consensus        59 l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~--l~~~v~~~~~d~~~~-------------  123 (291)
T d1kpia_          59 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVD--SPRRKEVRIQGWEEF-------------  123 (291)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSC--CSSCEEEEECCGGGC-------------
T ss_pred             CCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhc--cchhhhhhhhccccc-------------
Confidence            67999999999999999999886 68999999999999999999999988  888899999986421             


Q ss_pred             ccCCCCCCCCcccEEEEC-----Chhh--------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        239 QSEGNSTGGTAVARVIMN-----LPAT--------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~n-----pP~~--------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                              ..+||.|++-     .|..        =..|++.+.. |+|        ||.+.++.++..
T Consensus       124 --------~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkp--------gG~~~l~~i~~~  176 (291)
T d1kpia_         124 --------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD--------DGRMLLHTITIP  176 (291)
T ss_dssp             --------CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCT--------TCEEEEEEEECC
T ss_pred             --------ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCC--------CCceEEEEEecc
Confidence                    1359999873     1211        1246666655 665        488887777643

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=2.8e-11  Score=110.65  Aligned_cols=94  Identities=16%  Similarity=0.163  Sum_probs=75.6

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.+|++|||+|||+|.+++.+|+.|+ +|+|+|.|+. ...++++++.|+  +.++++++++|+.++...          
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~--~~~~v~~~~~~~~~~~~~----------   97 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANK--LDHVVTIIKGKVEEVELP----------   97 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTT--CTTTEEEEESCTTTCCCS----------
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhC--CccccceEeccHHHcccc----------
Confidence            44899999999999999999999987 8999999985 577888999999  888999999998874321          


Q ss_pred             ccCCCCCCCCcccEEEECChhh-------hHHHHHHHhc-cchh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPAT-------AVEYVRYLKV-LTRE  274 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~-------a~~~l~~~~~-l~~~  274 (324)
                              ..+||+|++++...       -..++.+... |+++
T Consensus        98 --------~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~  133 (316)
T d1oria_          98 --------VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPD  133 (316)
T ss_dssp             --------SSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEE
T ss_pred             --------cceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCC
Confidence                    24699999875542       2346666666 7776

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.13  E-value=2.5e-11  Score=105.01  Aligned_cols=77  Identities=10%  Similarity=0.092  Sum_probs=66.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +++|++|||+|||+|.++..+|+.   ..+|+++|+++.+++.|++|++..+  +. ++.++++|+.+.+...       
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~--~~-n~~~~~~d~~~~~~~~-------  142 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG--IE-NVIFVCGDGYYGVPEF-------  142 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT--CC-SEEEEESCGGGCCGGG-------
T ss_pred             ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc--cc-ccccccCchHHccccc-------
Confidence            679999999999999999999983   4599999999999999999999988  76 8999999987644331       


Q ss_pred             hcccCCCCCCCCcccEEEECC
Q psy16898        237 WSQSEGNSTGGTAVARVIMNL  257 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~np  257 (324)
                                 ..||+|+++.
T Consensus       143 -----------~~fD~I~~~~  152 (213)
T d1dl5a1         143 -----------SPYDVIFVTV  152 (213)
T ss_dssp             -----------CCEEEEEECS
T ss_pred             -----------cchhhhhhhc
Confidence                       3499999974

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=9.6e-11  Score=106.68  Aligned_cols=94  Identities=23%  Similarity=0.222  Sum_probs=73.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.+|++|||+|||+|.+++.+|+.|+ +|+|+|.|+.+.. +++++..|+  ..++++++++|+.++...          
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~--~~~~i~~~~~~~~~l~~~----------   99 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNK--LEDTITLIKGKIEEVHLP----------   99 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTT--CTTTEEEEESCTTTSCCS----------
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhC--CCccceEEEeeHHHhcCc----------
Confidence            45899999999999999999999987 9999999998764 666777777  777999999998875321          


Q ss_pred             ccCCCCCCCCcccEEEECChhhh-------HHHHHHHhc-cchh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPATA-------VEYVRYLKV-LTRE  274 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~a-------~~~l~~~~~-l~~~  274 (324)
                              ..+||+|++++....       ..++.+... |+++
T Consensus       100 --------~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~  135 (311)
T d2fyta1         100 --------VEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKG  135 (311)
T ss_dssp             --------CSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEE
T ss_pred             --------cccceEEEEeeeeeecccccccHHHHHHHHhcCCCC
Confidence                    246999999866531       245555544 7765

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=6e-11  Score=108.94  Aligned_cols=94  Identities=21%  Similarity=0.185  Sum_probs=75.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      ..+|++|||+|||+|.+++.+|+.|+ +|+|+|.|+ +++.|+++++.|+  +.++++++++|+.++...          
T Consensus        36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~--~~~~i~~i~~~~~~l~~~----------  102 (328)
T d1g6q1_          36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNG--FSDKITLLRGKLEDVHLP----------  102 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTT--CTTTEEEEESCTTTSCCS----------
T ss_pred             cCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhC--ccccceEEEeehhhccCc----------
Confidence            34899999999999999999999987 999999997 6789999999999  888999999998865221          


Q ss_pred             ccCCCCCCCCcccEEEECChhh-------hHHHHHHHhc-cchh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPAT-------AVEYVRYLKV-LTRE  274 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~-------a~~~l~~~~~-l~~~  274 (324)
                              ..+||+|++++...       ...++.+... |+++
T Consensus       103 --------~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~Lkpg  138 (328)
T d1g6q1_         103 --------FPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEG  138 (328)
T ss_dssp             --------SSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEE
T ss_pred             --------ccceeEEEEEecceeeccchhHHHHHHHHHhccCCC
Confidence                    24699999975432       2345666655 7776

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.09  E-value=1.9e-10  Score=98.76  Aligned_cols=101  Identities=14%  Similarity=0.168  Sum_probs=81.3

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .+..|||+|||+|.+.+.+|+.  ...++|+|+++.++..|.+++..++  ++ |+.++++|+.++.....         
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~--l~-Ni~~~~~da~~l~~~~~---------   98 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG--VP-NIKLLWVDGSDLTDYFE---------   98 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC--CS-SEEEEECCSSCGGGTSC---------
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhc--cc-cceeeecCHHHHhhhcc---------
Confidence            4558999999999999999994  5699999999999999999999999  87 89999999987653211         


Q ss_pred             cCCCCCCCCcccEEEECChhh------------hHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        240 SEGNSTGGTAVARVIMNLPAT------------AVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~------------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                             ...+|.|.++-|.-            ..+|++.+.. |+++        |.+|+-+
T Consensus        99 -------~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~Lkpg--------G~l~i~T  146 (204)
T d1yzha1          99 -------DGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPEN--------GEIHFKT  146 (204)
T ss_dssp             -------TTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTT--------CEEEEEE
T ss_pred             -------CCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCC--------cEEEEEE
Confidence                   23589998876641            2478888876 7765        8988754

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.08  E-value=3.1e-10  Score=102.10  Aligned_cols=97  Identities=16%  Similarity=0.107  Sum_probs=69.1

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCC---CCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVK---TPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~---~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      .++.+|||+|||+|.+++.+|++|++|+|+|+|+.|++.|++++..++  ..   ....+..+|.........       
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------  125 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRR--KEPAFDKWVIEEANWLTLDKDVP-------  125 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--TSHHHHTCEEEECCGGGHHHHSC-------
T ss_pred             cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcc--cccccceeeeeeccccccccccC-------
Confidence            357799999999999999999999999999999999999999998776  43   134555666554332210       


Q ss_pred             cccCCCCCCCCcccEEEEC------Chh------hhHHHHHHHhc-cchh
Q psy16898        238 SQSEGNSTGGTAVARVIMN------LPA------TAVEYVRYLKV-LTRE  274 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~n------pP~------~a~~~l~~~~~-l~~~  274 (324)
                              ....||.|++-      +|.      ....++..+.. |+++
T Consensus       126 --------~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  167 (292)
T d1xvaa_         126 --------AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG  167 (292)
T ss_dssp             --------CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEE
T ss_pred             --------CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcC
Confidence                    12459999862      121      12346666655 7776

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.07  E-value=8e-11  Score=105.78  Aligned_cols=98  Identities=11%  Similarity=0.056  Sum_probs=76.6

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      +.++.+|||+|||+|.++..+++.   +++|+|+|+|+.+++.|++|+...+  +  ++++.++|+.++..         
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~--~--~~~f~~~d~~~~~~---------   91 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--Y--DSEFLEGDATEIEL---------   91 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS--S--EEEEEESCTTTCCC---------
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc--c--cccccccccccccc---------
Confidence            457889999999999999999973   6799999999999999999998777  5  58999999876321         


Q ss_pred             hcccCCCCCCCCcccEEEECC-----hhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        237 WSQSEGNSTGGTAVARVIMNL-----PATAVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~np-----P~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                                ...||+|+++-     |. ...+++.+.. |+++        |.+.+..
T Consensus        92 ----------~~~fD~v~~~~~l~~~~d-~~~~l~~~~~~Lkpg--------G~lii~~  131 (281)
T d2gh1a1          92 ----------NDKYDIAICHAFLLHMTT-PETMLQKMIHSVKKG--------GKIICFE  131 (281)
T ss_dssp             ----------SSCEEEEEEESCGGGCSS-HHHHHHHHHHTEEEE--------EEEEEEE
T ss_pred             ----------cCCceEEEEehhhhcCCC-HHHHHHHHHHHcCcC--------cEEEEEE
Confidence                      13499999862     32 3346666655 7775        7777654

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.05  E-value=2.7e-10  Score=98.77  Aligned_cols=95  Identities=19%  Similarity=0.178  Sum_probs=69.5

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .+.++.+|||+|||+|.++..++++|++|+|+|+|+.|++.|++|    +  ..   .++.+|+.++...          
T Consensus        39 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~----~--~~---~~~~~~~~~l~~~----------   99 (246)
T d2avna1          39 YLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREK----G--VK---NVVEAKAEDLPFP----------   99 (246)
T ss_dssp             HCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHH----T--CS---CEEECCTTSCCSC----------
T ss_pred             hcCCCCEEEEECCCCchhcccccccceEEEEeecccccccccccc----c--cc---ccccccccccccc----------
Confidence            456788999999999999999999999999999999999999874    3  22   2567787764211          


Q ss_pred             ccCCCCCCCCcccEEEEC------ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        239 QSEGNSTGGTAVARVIMN------LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~n------pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                              ...||.|++.      .|. ...+++.+.. |+++        |++.+.+
T Consensus       100 --------~~~fD~ii~~~~~~~~~~d-~~~~l~~i~r~Lk~g--------G~~ii~~  140 (246)
T d2avna1         100 --------SGAFEAVLALGDVLSYVEN-KDKAFSEIRRVLVPD--------GLLIATV  140 (246)
T ss_dssp             --------TTCEEEEEECSSHHHHCSC-HHHHHHHHHHHEEEE--------EEEEEEE
T ss_pred             --------cccccceeeecchhhhhhh-HHHHHHHHHhhcCcC--------cEEEEEE
Confidence                    1459999863      222 2346666655 7775        7766554

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.1e-10  Score=99.88  Aligned_cols=102  Identities=12%  Similarity=-0.046  Sum_probs=76.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      ..+|++|||+|||+|..+..+++.+ ++|+++|+|+.+++.|+++++..+  .  ++.++.+|+.+......        
T Consensus        51 ~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~--~~~~~~~~~~~~~~~~~--------  118 (229)
T d1zx0a1          51 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--H--KVIPLKGLWEDVAPTLP--------  118 (229)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--S--EEEEEESCHHHHGGGSC--------
T ss_pred             ccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--c--ccccccccccccccccc--------
Confidence            4578899999999999999999865 599999999999999999987665  3  58889999887655432        


Q ss_pred             ccCCCCCCCCcccEEEECChhhh---------HHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        239 QSEGNSTGGTAVARVIMNLPATA---------VEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~a---------~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                              ...||.|+.|.....         ..++..+.. |+++        |.+.++.
T Consensus       119 --------~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpG--------G~~~~~~  163 (229)
T d1zx0a1         119 --------DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG--------GVLTYCN  163 (229)
T ss_dssp             --------TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE--------EEEEECC
T ss_pred             --------cccccceeecccccccccccccCHHHHHHHHHHHcCCC--------cEEEEEe
Confidence                    245999998865421         234444444 7765        7776543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.00  E-value=3.9e-10  Score=99.84  Aligned_cols=96  Identities=9%  Similarity=0.002  Sum_probs=71.0

Q ss_pred             HHhhcc--CCCEEEEEcCCCchhHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898        156 VTKEVR--EGDLVLDVFAGVGPFSIPAARRG-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA  232 (324)
Q Consensus       156 ~~~~~~--~g~~VLDl~~G~G~~al~~a~~g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~  232 (324)
                      +++.+.  ++.+|||+|||+|.++..++.++ ..|+++|+|+.+++.|++++...    + +++++++|+.++...    
T Consensus        85 fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~----~-~~~~~~~d~~~~~~~----  155 (254)
T d1xtpa_          85 FIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM----P-VGKFILASMETATLP----  155 (254)
T ss_dssp             HHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS----S-EEEEEESCGGGCCCC----
T ss_pred             HHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc----c-cceeEEccccccccC----
Confidence            444443  56799999999999999988754 59999999999999999876532    2 689999998875322    


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECC-----hhh-hHHHHHHHhc-cchh
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNL-----PAT-AVEYVRYLKV-LTRE  274 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~np-----P~~-a~~~l~~~~~-l~~~  274 (324)
                                    ...||.|++.-     |.. ...++..+.. |+++
T Consensus       156 --------------~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~Lkpg  190 (254)
T d1xtpa_         156 --------------PNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPN  190 (254)
T ss_dssp             --------------SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             --------------CCccceEEeeccccccchhhhHHHHHHHHHhcCCC
Confidence                          24599998863     322 2356666666 7775

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.00  E-value=2e-09  Score=91.29  Aligned_cols=126  Identities=13%  Similarity=0.142  Sum_probs=88.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.+|+++||++||+|+++..++++  +++|+|+|.++.|++.|+++++..+    +++.+++++..++.......     
T Consensus        21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~----~r~~~~~~~f~~~~~~~~~~-----   91 (192)
T d1m6ya2          21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS----DRVSLFKVSYREADFLLKTL-----   91 (192)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT----TTEEEEECCGGGHHHHHHHT-----
T ss_pred             CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc----ccccchhHHHhhHHHHHHHc-----
Confidence            468899999999999999999884  5799999999999999999997655    47999999887754332211     


Q ss_pred             cccCCCCCCCCcccEEEECChhhhHH---------HHHHHhccchhhcCCCCCCCEEEEEEcccCCChhHHhHhhhc
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPATAVE---------YVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSY  305 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~a~~---------~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~y  305 (324)
                              +...||.|++|+..++.+         ++..+..  . ....++++|.+.+-.|...++....+.++.+
T Consensus        92 --------~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~--~-a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~~  157 (192)
T d1m6ya2          92 --------GIEKVDGILMDLGVSTYQLKGENRELENLKEFLK--K-AEDLLNPGGRIVVISFHSLEDRIVKETFRNS  157 (192)
T ss_dssp             --------TCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHH--H-GGGGEEEEEEEEEEESSHHHHHHHHHHHHHC
T ss_pred             --------CCCCcceeeeccchhHhhhhhhhccchhHHHHHH--H-HHHhcCCCCeeeeeccccHHHHHHHHHHhhc
Confidence                    024599999998875432         1111111  0 0123345689999998877665555555443

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=3e-10  Score=98.85  Aligned_cols=79  Identities=18%  Similarity=0.135  Sum_probs=65.2

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCC----CCeEEEeccHHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVK----TPISATQKDARDFLQTDAR  231 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~----~~v~~~~~D~~~~~~~~~~  231 (324)
                      .+++|++|||+|||+|..+..+|+.   ..+|+++|+++++++.|++|++..+  +.    +++.+..+|+.......  
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~--~~~~~~~~~~~~~gD~~~~~~~~--  148 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDD--PTLLSSGRVQLVVGDGRMGYAEE--  148 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHC--THHHHTSSEEEEESCGGGCCGGG--
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccC--cccccccceEEEEeecccccchh--
Confidence            3579999999999999999988873   4599999999999999999998765  43    37899999987644331  


Q ss_pred             HhhhhhcccCCCCCCCCcccEEEECC
Q psy16898        232 AHLVRWSQSEGNSTGGTAVARVIMNL  257 (324)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~fD~Vi~np  257 (324)
                                      ..||+|+++-
T Consensus       149 ----------------~~fD~I~~~~  158 (224)
T d1i1na_         149 ----------------APYDAIHVGA  158 (224)
T ss_dssp             ----------------CCEEEEEECS
T ss_pred             ----------------hhhhhhhhhc
Confidence                            3499999973

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.99  E-value=1.4e-10  Score=100.99  Aligned_cols=75  Identities=17%  Similarity=0.262  Sum_probs=63.8

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .+++|++|||+|||+|+++..+|+.+.+|+++|+++.+++.|++|...    .. |+.++.+|+.....+.         
T Consensus        67 ~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~----~~-nv~~~~~d~~~g~~~~---------  132 (224)
T d1vbfa_          67 DLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY----YN-NIKLILGDGTLGYEEE---------  132 (224)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTT----CS-SEEEEESCGGGCCGGG---------
T ss_pred             hhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhc----cc-ccccccCchhhcchhh---------
Confidence            367999999999999999999999988999999999999999998763    32 8999999987643321         


Q ss_pred             ccCCCCCCCCcccEEEEC
Q psy16898        239 QSEGNSTGGTAVARVIMN  256 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~n  256 (324)
                               ..||+|+++
T Consensus       133 ---------~pfD~Iiv~  141 (224)
T d1vbfa_         133 ---------KPYDRVVVW  141 (224)
T ss_dssp             ---------CCEEEEEES
T ss_pred             ---------hhHHHHHhh
Confidence                     349999997

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.98  E-value=5.6e-10  Score=96.58  Aligned_cols=87  Identities=10%  Similarity=0.108  Sum_probs=66.5

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .++++|||+|||+|.++..++++|.+|+|+|+|+.+++.|+++.       .+++.++++|+.++..             
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~-------~~~~~~~~~~~~~~~~-------------   78 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRL-------KDGITYIHSRFEDAQL-------------   78 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHS-------CSCEEEEESCGGGCCC-------------
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhccc-------cccccccccccccccc-------------
Confidence            46778999999999999999999999999999999999998653       2368999999876422             


Q ss_pred             CCCCCCCCcccEEEEC-----ChhhhHHHHHHHh-c-cchh
Q psy16898        241 EGNSTGGTAVARVIMN-----LPATAVEYVRYLK-V-LTRE  274 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~-~-l~~~  274 (324)
                            ...||.|++.     .+. ...++..+. . |+++
T Consensus        79 ------~~~fD~I~~~~vleh~~d-~~~~l~~i~~~~Lk~g  112 (225)
T d2p7ia1          79 ------PRRYDNIVLTHVLEHIDD-PVALLKRINDDWLAEG  112 (225)
T ss_dssp             ------SSCEEEEEEESCGGGCSS-HHHHHHHHHHTTEEEE
T ss_pred             ------ccccccccccceeEecCC-HHHHHHHHHHHhcCCC
Confidence                  2459999884     222 345666654 4 6665

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=3e-09  Score=97.50  Aligned_cols=71  Identities=15%  Similarity=0.100  Sum_probs=57.4

Q ss_pred             HHHhh--ccCCCEEEEEcCCCchhHHHHHh-cCC-EEEEEeCCHHHHHHHHHHHHHh-------CCCCC-CCeEEEeccH
Q psy16898        155 RVTKE--VREGDLVLDVFAGVGPFSIPAAR-RGA-IVAANDLNPDSYAWLQASIRLN-------ERQVK-TPISATQKDA  222 (324)
Q Consensus       155 ~~~~~--~~~g~~VLDl~~G~G~~al~~a~-~g~-~V~avD~~~~a~~~a~~N~~~n-------~~~l~-~~v~~~~~D~  222 (324)
                      .+++.  ++++++|||+|||+|.+++.+|+ .++ +|+|+|+++.+++.|+++++..       +  +. .+++++++|+
T Consensus       142 ~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g--~~~~~i~~~~gd~  219 (328)
T d1nw3a_         142 QMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG--KKHAEYTLERGDF  219 (328)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHT--CCCCCEEEEECCT
T ss_pred             HHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcc--ccCCceEEEECcc
Confidence            34554  67899999999999999999987 455 8999999999999999887653       2  21 3799999999


Q ss_pred             HHHHH
Q psy16898        223 RDFLQ  227 (324)
Q Consensus       223 ~~~~~  227 (324)
                      .+...
T Consensus       220 ~~~~~  224 (328)
T d1nw3a_         220 LSEEW  224 (328)
T ss_dssp             TSHHH
T ss_pred             ccccc
Confidence            87643

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.90  E-value=1.8e-09  Score=95.22  Aligned_cols=102  Identities=17%  Similarity=0.146  Sum_probs=79.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +.+..+|||+|||+|.+++.++++  +.+++++|+ +.+++.+++++...+  +.++++++.+|+++..           
T Consensus        78 ~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~rv~~~~~D~~~~~-----------  143 (253)
T d1tw3a2          78 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG--LSDRVDVVEGDFFEPL-----------  143 (253)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT--CTTTEEEEECCTTSCC-----------
T ss_pred             CccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhh--cccchhhccccchhhc-----------
Confidence            346689999999999999999985  569999998 779999999999988  8789999999976421           


Q ss_pred             cccCCCCCCCCcccEEEEC-----Ch-hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898        238 SQSEGNSTGGTAVARVIMN-----LP-ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~n-----pP-~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                               ...||+|++.     .| .....++..+.. |+++        |.+.+..+..
T Consensus       144 ---------~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPG--------G~l~i~e~~~  188 (253)
T d1tw3a2         144 ---------PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPG--------GRILIHERDD  188 (253)
T ss_dssp             ---------SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEE--------EEEEEEECCB
T ss_pred             ---------ccchhheeeccccccCCchhhHHHHHHHHHhcCCC--------cEEEEEeccC
Confidence                     1349999874     33 334567777766 8876        7777766543

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.85  E-value=2.3e-09  Score=92.55  Aligned_cols=77  Identities=14%  Similarity=0.144  Sum_probs=67.3

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      .+++|++|||+|||+|+.+..+|+. |.+|+++|.++..++.|++|++..+  +. |+.++++|+.+.....        
T Consensus        75 ~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g--~~-nv~~~~gd~~~g~~~~--------  143 (215)
T d1jg1a_          75 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAG--VK-NVHVILGDGSKGFPPK--------  143 (215)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTT--CC-SEEEEESCGGGCCGGG--------
T ss_pred             ccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcC--Cc-eeEEEECccccCCccc--------
Confidence            3679999999999999999999984 6689999999999999999999998  87 8999999998644331        


Q ss_pred             cccCCCCCCCCcccEEEEC
Q psy16898        238 SQSEGNSTGGTAVARVIMN  256 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~n  256 (324)
                                ..||.|++.
T Consensus       144 ----------~pfD~Iiv~  152 (215)
T d1jg1a_         144 ----------APYDVIIVT  152 (215)
T ss_dssp             ----------CCEEEEEEC
T ss_pred             ----------CcceeEEee
Confidence                      349999986

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=2.5e-08  Score=85.84  Aligned_cols=121  Identities=16%  Similarity=0.152  Sum_probs=88.5

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      +.++|||+|||+|.-++.+|+.   +.+|+++|+++.+++.|++|++..+  +.++++++.+|+.+.+++.....     
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g--l~~~i~l~~Gd~~e~l~~l~~~~-----  128 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG--LQDKVTILNGASQDLIPQLKKKY-----  128 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHGGGHHHHS-----
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC--CCccceeeeccccccccchhhcc-----
Confidence            5579999999999999999973   6799999999999999999999999  88889999999999887754421     


Q ss_pred             ccCCCCCCCCcccEEEECChhhhH----HHHHHHhccchhhcCCCCCCCEEEEEEcccCCChhHHhHhhh
Q psy16898        239 QSEGNSTGGTAVARVIMNLPATAV----EYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKS  304 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~npP~~a~----~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~  304 (324)
                             ....||.|.+|--....    .+..+.+.++++        |+|.+........++..+.++.
T Consensus       129 -------~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpG--------GvIv~Ddvl~~g~~~~~~~vr~  183 (214)
T d2cl5a1         129 -------DVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKG--------TVLLADNVIVPGTPDFLAYVRG  183 (214)
T ss_dssp             -------CCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEE--------EEEEESCCCCCCCHHHHHHHHH
T ss_pred             -------cccccceeeecccccccccHHHHHHHhCccCCC--------cEEEEeCcCCCCChHHHHHHhc
Confidence                   02359999999543321    122333335654        7776654433344555555554

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.82  E-value=2.8e-09  Score=90.50  Aligned_cols=95  Identities=11%  Similarity=0.084  Sum_probs=68.4

Q ss_pred             HHHhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898        155 RVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       155 ~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      ..+..+.++.+|||+|||+|.++..++    +++|+|+|+.+++.|+++    +      +.++++|+.++...      
T Consensus        29 ~~~~~~~~~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~~----~------~~~~~~d~~~l~~~------   88 (208)
T d1vlma_          29 QAVKCLLPEGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARKR----G------VFVLKGTAENLPLK------   88 (208)
T ss_dssp             HHHHHHCCSSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHHT----T------CEEEECBTTBCCSC------
T ss_pred             HHHHhhCCCCeEEEECCCCcccccccc----eEEEEeCChhhccccccc----c------cccccccccccccc------
Confidence            345556677789999999999998874    478999999999998752    3      67899998765321      


Q ss_pred             hhhcccCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                                  ...||.|++.     .|. ...++..+.. |+++        |.+.+...
T Consensus        89 ------------~~~fD~I~~~~~l~h~~d-~~~~l~~~~~~L~pg--------G~l~i~~~  129 (208)
T d1vlma_          89 ------------DESFDFALMVTTICFVDD-PERALKEAYRILKKG--------GYLIVGIV  129 (208)
T ss_dssp             ------------TTCEEEEEEESCGGGSSC-HHHHHHHHHHHEEEE--------EEEEEEEE
T ss_pred             ------------cccccccccccccccccc-cccchhhhhhcCCCC--------ceEEEEec
Confidence                        2459999985     333 3356666665 7775        66655544

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.82  E-value=1.7e-09  Score=94.57  Aligned_cols=91  Identities=15%  Similarity=0.287  Sum_probs=70.6

Q ss_pred             HHHhh--ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898        155 RVTKE--VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA  232 (324)
Q Consensus       155 ~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~  232 (324)
                      ++++.  +.++++||++|||+|.++..+++.+++|+|+|+++.+++.++++...+     ++++++++|+.++...    
T Consensus        12 ~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~-----~n~~i~~~D~l~~~~~----   82 (235)
T d1qama_          12 KIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH-----DNFQVLNKDILQFKFP----   82 (235)
T ss_dssp             HHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC-----CSEEEECCCGGGCCCC----
T ss_pred             HHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcc-----cchhhhhhhhhhcccc----
Confidence            45554  468999999999999999999999999999999999999998876432     2899999999875211    


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECChhh-hHHHHHHH
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYL  268 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~  268 (324)
                                    ......||.|+|+. +-..+..+
T Consensus        83 --------------~~~~~~vv~NLPYnIss~il~~l  105 (235)
T d1qama_          83 --------------KNQSYKIFGNIPYNISTDIIRKI  105 (235)
T ss_dssp             --------------SSCCCEEEEECCGGGHHHHHHHH
T ss_pred             --------------ccccceeeeeehhhhhHHHHHHH
Confidence                          12246799999995 23344333

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.6e-08  Score=91.11  Aligned_cols=86  Identities=17%  Similarity=0.171  Sum_probs=70.4

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAAR---RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~---~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      ...+|++|||+|||.|+-++.+|.   ....|+|+|+++.-++.+++|++..+  +. ++.+.+.|...+......    
T Consensus        91 ~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g--~~-~~~~~~~d~~~~~~~~~~----  163 (293)
T d2b9ea1          91 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG--VS-CCELAEEDFLAVSPSDPR----  163 (293)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT--CC-SEEEEECCGGGSCTTCGG----
T ss_pred             CCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC--cc-ceeeeehhhhhhcccccc----
Confidence            356899999999999999999886   24599999999999999999999999  87 899999998765332111    


Q ss_pred             hhcccCCCCCCCCcccEEEECChhhhH
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLPATAV  262 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP~~a~  262 (324)
                                 ...||.|++|+|.++.
T Consensus       164 -----------~~~fD~VL~DaPCSg~  179 (293)
T d2b9ea1         164 -----------YHEVHYILLDPSCSGS  179 (293)
T ss_dssp             -----------GTTEEEEEECCCCCC-
T ss_pred             -----------cceeeEEeecCcccch
Confidence                       1359999999998653

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.1e-07  Score=82.00  Aligned_cols=110  Identities=14%  Similarity=0.066  Sum_probs=86.7

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      .....++||++|||+|.-++.+|+.   +.+|+++|.+++..+.|++|++..+  +.++++++.+|+.+.+.+.....  
T Consensus        56 ~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag--~~~~i~~~~Gda~e~l~~~~~~~--  131 (219)
T d2avda1          56 RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE--AEHKIDLRLKPALETLDELLAAG--  131 (219)
T ss_dssp             HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT--CTTTEEEEESCHHHHHHHHHHTT--
T ss_pred             HccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC--ccceEEEEEeehhhcchhhhhhc--
Confidence            3446789999999999999999983   5699999999999999999999999  88899999999999988765421  


Q ss_pred             hhcccCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCF  290 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f  290 (324)
                                ....||.|.+|--.. -..+++.+.. ++++        |++.+.-.
T Consensus       132 ----------~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~G--------Gvii~Dn~  170 (219)
T d2avda1         132 ----------EAGTFDVAVVDADKENCSAYYERCLQLLRPG--------GILAVLRV  170 (219)
T ss_dssp             ----------CTTCEEEEEECSCSTTHHHHHHHHHHHEEEE--------EEEEEECC
T ss_pred             ----------ccCCccEEEEeCCHHHHHHHHHHHHHHhcCC--------cEEEEeCC
Confidence                      123599999996443 3455666655 6665        77766533

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.72  E-value=1.8e-08  Score=88.88  Aligned_cols=101  Identities=16%  Similarity=0.044  Sum_probs=79.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      +....+|||+|||+|.++..++++  +.+++++|+ |.+++.+++++...+  +.+++++..+|..+..           
T Consensus        79 ~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~--~~~ri~~~~~d~~~~~-----------  144 (256)
T d1qzza2          79 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG--LADRVTVAEGDFFKPL-----------  144 (256)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTTSCC-----------
T ss_pred             CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcC--Ccceeeeeeeeccccc-----------
Confidence            346679999999999999999995  679999997 889999999999888  8779999999976521           


Q ss_pred             cccCCCCCCCCcccEEEEC-----Ch-hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        238 SQSEGNSTGGTAVARVIMN-----LP-ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~n-----pP-~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                               +..+|.|++.     .| .....+|..+.. |+++        |.+.+..+.
T Consensus       145 ---------p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~Lkpg--------G~llI~d~~  188 (256)
T d1qzza2         145 ---------PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPG--------GRLLVLDRA  188 (256)
T ss_dssp             ---------SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEECC
T ss_pred             ---------cccchhhhccccccccCcHHHHHHHHHHHhhcCCc--------ceeEEEEec
Confidence                     1248998873     33 335667777766 8876        777776654

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=4.1e-08  Score=92.09  Aligned_cols=52  Identities=21%  Similarity=0.296  Sum_probs=45.5

Q ss_pred             HHhh--ccCCCEEEEEcCCCchhHHHHHhc-CC-EEEEEeCCHHHHHHHHHHHHHh
Q psy16898        156 VTKE--VREGDLVLDVFAGVGPFSIPAARR-GA-IVAANDLNPDSYAWLQASIRLN  207 (324)
Q Consensus       156 ~~~~--~~~g~~VLDl~~G~G~~al~~a~~-g~-~V~avD~~~~a~~~a~~N~~~n  207 (324)
                      +++.  +++|++|||||||+|.+++.+|+. |+ +|+|||+++.+++.|+++++..
T Consensus       208 Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~  263 (406)
T d1u2za_         208 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEEL  263 (406)
T ss_dssp             HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence            4443  679999999999999999999974 55 9999999999999999998754

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=1.4e-08  Score=90.24  Aligned_cols=100  Identities=13%  Similarity=0.067  Sum_probs=72.8

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      .++.+|||+|||+|.++..+++.  +..|+|+|+|+.|++.|+++    .   + ++.+..+|+.++...          
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~----~---~-~~~~~~~d~~~l~~~----------  144 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR----Y---P-QVTFCVASSHRLPFS----------  144 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH----C---T-TSEEEECCTTSCSBC----------
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc----c---c-cccceeeehhhccCC----------
Confidence            46789999999999999999986  46999999999999988753    2   2 688999998875322          


Q ss_pred             ccCCCCCCCCcccEEEEC-ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhH
Q psy16898        239 QSEGNSTGGTAVARVIMN-LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLET  298 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~n-pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~  298 (324)
                              ...||.|++. .|..    ++.+.. ||++        |.+.+....+..-.+.
T Consensus       145 --------~~sfD~v~~~~~~~~----~~e~~rvLkpg--------G~l~~~~p~~~~l~el  186 (268)
T d1p91a_         145 --------DTSMDAIIRIYAPCK----AEELARVVKPG--------GWVITATPGPRHLMEL  186 (268)
T ss_dssp             --------TTCEEEEEEESCCCC----HHHHHHHEEEE--------EEEEEEEECTTTTHHH
T ss_pred             --------CCCEEEEeecCCHHH----HHHHHHHhCCC--------cEEEEEeeCCcchHHH
Confidence                    2459999865 3442    333444 7775        8887776655444333

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=9.2e-09  Score=89.78  Aligned_cols=48  Identities=17%  Similarity=0.223  Sum_probs=43.3

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhC
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNE  208 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~  208 (324)
                      .+|.+|||+|||+|.+++.+++.++ +|+|+|+|+.+++.|+++++.++
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~   98 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEP   98 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCT
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhcc
Confidence            3677999999999999998888776 89999999999999999998766

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.69  E-value=1.2e-08  Score=88.40  Aligned_cols=80  Identities=15%  Similarity=0.221  Sum_probs=63.1

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhc----C----CEEEEEeCCHHHHHHHHHHHHHhCC---CCCCCeEEEeccHHHHHH
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARR----G----AIVAANDLNPDSYAWLQASIRLNER---QVKTPISATQKDARDFLQ  227 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~----g----~~V~avD~~~~a~~~a~~N~~~n~~---~l~~~v~~~~~D~~~~~~  227 (324)
                      .+++|++|||+|||+|+++..+++.    |    .+|+++|.++++++.|++|+..++.   ++. |+.++++|+.+...
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~-nv~~~~~d~~~~~~  155 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG-QLLIVEGDGRKGYP  155 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT-SEEEEESCGGGCCG
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCcc-EEEEEecccccccc
Confidence            4678999999999999999888873    3    4899999999999999999765420   033 89999999986443


Q ss_pred             HHHHHhhhhhcccCCCCCCCCcccEEEECC
Q psy16898        228 TDARAHLVRWSQSEGNSTGGTAVARVIMNL  257 (324)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~fD~Vi~np  257 (324)
                      ..                  ..||+|+++-
T Consensus       156 ~~------------------~~fD~Iiv~~  167 (223)
T d1r18a_         156 PN------------------APYNAIHVGA  167 (223)
T ss_dssp             GG------------------CSEEEEEECS
T ss_pred             cc------------------cceeeEEEEe
Confidence            31                  3499999973

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.65  E-value=9.2e-08  Score=86.83  Aligned_cols=81  Identities=14%  Similarity=0.195  Sum_probs=68.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR---RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~---~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ..+|++|||+|||.|+-+..++.   ....|+|+|.++.-++.+++|+++.+  +. ++.+++.|...+...        
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~--~~-~i~~~~~d~~~~~~~--------  182 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG--VL-NVILFHSSSLHIGEL--------  182 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT--CC-SEEEESSCGGGGGGG--------
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH--hh-ccccccccccccccc--------
Confidence            56899999999999999999886   24589999999999999999999999  86 788999998764221        


Q ss_pred             hcccCCCCCCCCcccEEEECChhhh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                                ...||.|++|+|.++
T Consensus       183 ----------~~~fD~ILvDaPCSg  197 (313)
T d1ixka_         183 ----------NVEFDKILLDAPCTG  197 (313)
T ss_dssp             ----------CCCEEEEEEECCTTS
T ss_pred             ----------cccccEEEEcccccc
Confidence                      245999999999854

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.65  E-value=6.5e-09  Score=94.81  Aligned_cols=77  Identities=18%  Similarity=0.190  Sum_probs=61.7

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc----C---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR----G---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAH  233 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~----g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~  233 (324)
                      .++.+|||+|||+|.|.+.+..+    +   ..++|+|+++.+++.|+.|+..++  ..  ..+.++|.....       
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~--~~--~~~~~~d~~~~~-------  184 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR--QK--MTLLHQDGLANL-------  184 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT--CC--CEEEESCTTSCC-------
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh--hh--hhhhcccccccc-------
Confidence            46679999999999999998752    1   279999999999999999999988  54  677787754311       


Q ss_pred             hhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        234 LVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       234 ~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                  ...+||+||+|||+.
T Consensus       185 ------------~~~~fD~vi~NPPy~  199 (328)
T d2f8la1         185 ------------LVDPVDVVISDLPVG  199 (328)
T ss_dssp             ------------CCCCEEEEEEECCCS
T ss_pred             ------------ccccccccccCCCCC
Confidence                        124699999999984

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.7e-08  Score=90.22  Aligned_cols=92  Identities=22%  Similarity=0.287  Sum_probs=73.6

Q ss_pred             HHHhh--ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898        155 RVTKE--VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA  232 (324)
Q Consensus       155 ~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~  232 (324)
                      ++++.  +.+++.||++|+|.|.++..+++++++|+|+|+++.+++.+++....+.  ..++++++++|+.++-.     
T Consensus        12 kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~--~~~~~~~i~~D~l~~~~-----   84 (278)
T d1zq9a1          12 SIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTP--VASKLQVLVGDVLKTDL-----   84 (278)
T ss_dssp             HHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTST--TGGGEEEEESCTTTSCC-----
T ss_pred             HHHHHhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhc--cccchhhhHHHHhhhhh-----
Confidence            45443  5578999999999999999999999999999999999999999887665  55589999999876411     


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECChhh-hHHHHHHH
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYL  268 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~  268 (324)
                                     ..++.||.|+|+. +...+..+
T Consensus        85 ---------------~~~~~vV~NLPY~Iss~il~~~  106 (278)
T d1zq9a1          85 ---------------PFFDTCVANLPYQISSPFVFKL  106 (278)
T ss_dssp             ---------------CCCSEEEEECCGGGHHHHHHHH
T ss_pred             ---------------hhhhhhhcchHHHHHHHHHHHH
Confidence                           2367899999995 33344433

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.62  E-value=7.4e-10  Score=97.56  Aligned_cols=83  Identities=18%  Similarity=0.329  Sum_probs=66.5

Q ss_pred             HHHhh--ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898        155 RVTKE--VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA  232 (324)
Q Consensus       155 ~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~  232 (324)
                      ++++.  +.++++|||+|||+|.++..+++++++|+|+|+++.+++.++++...    . .+++++++|+.++-..    
T Consensus        20 kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~----~-~n~~ii~~D~l~~~~~----   90 (245)
T d1yuba_          20 QIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL----N-TRVTLIHQDILQFQFP----   90 (245)
T ss_dssp             HHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT----C-SEEEECCSCCTTTTCC----
T ss_pred             HHHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhh----c-cchhhhhhhhhccccc----
Confidence            46664  46889999999999999999999999999999999999888765432    2 3899999999875211    


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                    ...++.||.|+|+.
T Consensus        91 --------------~~~~~~vv~NLPY~  104 (245)
T d1yuba_          91 --------------NKQRYKIVGNIPYH  104 (245)
T ss_dssp             --------------CSSEEEEEEECCSS
T ss_pred             --------------cceeeeEeeeeehh
Confidence                          13467899999994

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.61  E-value=3.1e-07  Score=79.45  Aligned_cols=108  Identities=13%  Similarity=0.081  Sum_probs=85.0

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR---RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~---~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ....++||++|+++|.-++.+|+   .+++|+++|.+++..+.|++|++..+  +.++++++.+|+.+.+.+...+... 
T Consensus        57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g--~~~~i~~~~g~a~~~L~~l~~~~~~-  133 (227)
T d1susa1          57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG--VDHKIDFREGPALPVLDEMIKDEKN-  133 (227)
T ss_dssp             HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHHHHHHCGGG-
T ss_pred             hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc--cccceeeeehHHHHHHHHHHhcccc-
Confidence            44678999999999999999997   35799999999999999999999999  8889999999999999887542100 


Q ss_pred             hcccCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLY  288 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y  288 (324)
                                ...||.|++|--.. -..+++.+.. +++        ||++.+.
T Consensus       134 ----------~~~fD~iFiDa~k~~y~~~~e~~~~ll~~--------gGiii~D  169 (227)
T d1susa1         134 ----------HGSYDFIFVDADKDNYLNYHKRLIDLVKV--------GGVIGYD  169 (227)
T ss_dssp             ----------TTCBSEEEECSCSTTHHHHHHHHHHHBCT--------TCCEEEE
T ss_pred             ----------CCceeEEEeccchhhhHHHHHHHHhhcCC--------CcEEEEc
Confidence                      13599999995432 2345555554 454        4777776

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=1.6e-07  Score=84.02  Aligned_cols=82  Identities=16%  Similarity=0.212  Sum_probs=65.2

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      ..+|++|||+|||.|+-++.+|..+  ..|+|+|+++.-++.+++|++..+  +. ++.....|....... .       
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g--~~-~~~~~~~~~~~~~~~-~-------  168 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG--MK-ATVKQGDGRYPSQWC-G-------  168 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT--CC-CEEEECCTTCTHHHH-T-------
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccc--cc-ceeeeccccccchhc-c-------
Confidence            5689999999999999999998743  589999999999999999999999  76 566665554322111 0       


Q ss_pred             cccCCCCCCCCcccEEEECChhhh
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                               ...||.|++|+|.++
T Consensus       169 ---------~~~fd~IL~DaPCSg  183 (284)
T d1sqga2         169 ---------EQQFDRILLDAPCSA  183 (284)
T ss_dssp             ---------TCCEEEEEEECCCCC
T ss_pred             ---------cccccEEEEeccccc
Confidence                     245999999999964

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.59  E-value=2.2e-07  Score=82.80  Aligned_cols=110  Identities=14%  Similarity=0.111  Sum_probs=83.5

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCC-------CCCCCeEEEeccHHHHHHHHHH
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNER-------QVKTPISATQKDARDFLQTDAR  231 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~-------~l~~~v~~~~~D~~~~~~~~~~  231 (324)
                      ..+.++||.+|+|.|..+..+++... +|++||++|..++.+++-...++.       .-..+++++.+|++.++.+   
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~---  146 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN---  146 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH---
T ss_pred             CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc---
Confidence            45678999999999999999888654 999999999999999875432210       0234899999999999864   


Q ss_pred             HhhhhhcccCCCCCCCCcccEEEECChhh--------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCC
Q psy16898        232 AHLVRWSQSEGNSTGGTAVARVIMNLPAT--------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMD  295 (324)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~fD~Vi~npP~~--------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~  295 (324)
                                     ..+||+||+|++..        ..+|.+.++. |+++        |++.+.+-++...
T Consensus       147 ---------------~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~--------Gv~v~q~~s~~~~  196 (276)
T d1mjfa_         147 ---------------NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP--------GIYVTQAGSVYLF  196 (276)
T ss_dssp             ---------------CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE--------EEEEEEEEETTTS
T ss_pred             ---------------cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCC--------ceEEEecCCcchh
Confidence                           14599999987652        2578888877 7776        8887776555543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.1e-07  Score=84.34  Aligned_cols=108  Identities=6%  Similarity=0.081  Sum_probs=72.6

Q ss_pred             CEEEEEcCCCchhHHHHHhc------C--CEEEEEeCCHHHHHHHHHHHHHhCCCCCC-CeEEEeccHHHHHHHHHHHhh
Q psy16898        164 DLVLDVFAGVGPFSIPAARR------G--AIVAANDLNPDSYAWLQASIRLNERQVKT-PISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~~------g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~-~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      .+|||+|||+|.++..+++.      +  ..++|+|+|+.|++.|++++..... +.. ++.+...++.++......   
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---  117 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN-LENVKFAWHKETSSEYQSRMLE---  117 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCS-CTTEEEEEECSCHHHHHHHHTT---
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccc-cccccccchhhhhhhhcchhcc---
Confidence            37999999999998887652      2  3789999999999999999865330 221 245567777665443211   


Q ss_pred             hhhcccCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                               ......||+|++.     .|. ...++..+.. |+++        |.+.+.+..+.
T Consensus       118 ---------~~~~~~fD~I~~~~~l~~~~d-~~~~l~~l~~~Lkpg--------G~l~i~~~~~~  164 (280)
T d1jqea_         118 ---------KKELQKWDFIHMIQMLYYVKD-IPATLKFFHSLLGTN--------AKMLIIVVSGS  164 (280)
T ss_dssp             ---------SSSCCCEEEEEEESCGGGCSC-HHHHHHHHHHTEEEE--------EEEEEEEECTT
T ss_pred             ---------cCCCCceeEEEEccceecCCC-HHHHHHHHHhhCCCC--------CEEEEEEecCc
Confidence                     1123569999983     333 2356777766 7765        77777766543

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.56  E-value=3.1e-08  Score=86.90  Aligned_cols=79  Identities=18%  Similarity=0.115  Sum_probs=65.1

Q ss_pred             CEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCC--C----CCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        164 DLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQ--V----KTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~--l----~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      .+|||+.||.|..|+.+|..|++|+++|.||.....++.+++.....  .    ..+++++++|+.+++...        
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~--------  161 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI--------  161 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC--------
T ss_pred             CEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc--------
Confidence            38999999999999999999999999999999988888877653200  1    127899999999988753        


Q ss_pred             cccCCCCCCCCcccEEEECChh
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPA  259 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~  259 (324)
                               ...||+|.+||+.
T Consensus       162 ---------~~~~DvIYlDPMF  174 (250)
T d2oyra1         162 ---------TPRPQVVYLDPMF  174 (250)
T ss_dssp             ---------SSCCSEEEECCCC
T ss_pred             ---------CCCCCEEEECCCC
Confidence                     1349999999987

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=3.7e-08  Score=86.77  Aligned_cols=96  Identities=21%  Similarity=0.247  Sum_probs=70.2

Q ss_pred             HHHhh--ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898        155 RVTKE--VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA  232 (324)
Q Consensus       155 ~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~  232 (324)
                      ++++.  +.+++.||++|||.|.++..+++++++|+|+|+++.+++.+++....+     ++++++++|+.++-.....+
T Consensus        12 ~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~-----~~~~ii~~D~l~~~~~~~~~   86 (252)
T d1qyra_          12 SIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLG-----PKLTIYQQDAMTFNFGELAE   86 (252)
T ss_dssp             HHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTG-----GGEEEECSCGGGCCHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhc-----cchhHHhhhhhhhccccccc
Confidence            34444  457899999999999999999999999999999999999998643322     38999999998753322111


Q ss_pred             hhhhhcccCCCCCCCCcccEEEECChhh-hHHHHHHH
Q psy16898        233 HLVRWSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYL  268 (324)
Q Consensus       233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~  268 (324)
                      .             ....-.|+.|+|+. +...+..+
T Consensus        87 ~-------------~~~~~~vvgNlPY~Iss~Il~~l  110 (252)
T d1qyra_          87 K-------------MGQPLRVFGNLPYNISTPLMFHL  110 (252)
T ss_dssp             H-------------HTSCEEEEEECCTTTHHHHHHHH
T ss_pred             c-------------cCCCeEEEecchHHHHHHHHHHh
Confidence            0             01245899999995 33344444

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.41  E-value=2e-06  Score=71.77  Aligned_cols=122  Identities=18%  Similarity=0.202  Sum_probs=83.9

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      +.+|+.++|+.+|.|+.+..+.+++.+|+|+|.+|.|++.+++.    .  . .++.+++++..++.......       
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~----~--~-~~~~~~~~~f~~~~~~l~~~-------   81 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL----H--L-PGLTVVQGNFRHLKRHLAAL-------   81 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHT----C--C-TTEEEEESCGGGHHHHHHHT-------
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhc----c--c-cceeEeehHHHHHHHHHHHc-------
Confidence            56899999999999999999999888999999999999888652    2  2 37999999888764432221       


Q ss_pred             cCCCCCCCCcccEEEECChhhhHH---------HHHHHhccchhhcCCCCCCCEEEEEEcccCCChhHHhHhhh
Q psy16898        240 SEGNSTGGTAVARVIMNLPATAVE---------YVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKS  304 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a~~---------~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~  304 (324)
                            ....+|.|++|+-.++.+         +++......   ...++++|.+.+-+|...++....+..+.
T Consensus        82 ------~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~---~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e  146 (182)
T d1wg8a2          82 ------GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQA---AEVLAPGGRLVVIAFHSLEDRVVKRFLRE  146 (182)
T ss_dssp             ------TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHH---HHHEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred             ------CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHH---HhhhCCCCeEEEEecccchhHHHHHHHhh
Confidence                  023599999998554432         222221100   11233458888888877665555555443

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.40  E-value=7.7e-07  Score=79.83  Aligned_cols=111  Identities=9%  Similarity=0.026  Sum_probs=84.4

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCC-CCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQV-KTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l-~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      ...++||-+|.|.|..+..+++.  ..+|++||++|..++.+++-...+...+ +.+++++.+|+++++.+.        
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~--------  159 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF--------  159 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC--------
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcC--------
Confidence            45679999999999999999984  3599999999999999998766542102 248999999999998753        


Q ss_pred             cccCCCCCCCCcccEEEECChhh---------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCCh
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPAT---------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDL  296 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~---------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~  296 (324)
                               ..+||+||+|+++.         ..+|.+.++. |+++        |++.+.+-++....
T Consensus       160 ---------~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~--------Gi~v~q~~sp~~~~  211 (295)
T d1inla_         160 ---------KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKED--------GVFSAETEDPFYDI  211 (295)
T ss_dssp             ---------SSCEEEEEEEC----------CCSHHHHHHHHHHEEEE--------EEEEEECCCTTTTH
T ss_pred             ---------CCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCC--------cEEEEecCChhhhh
Confidence                     24699999997542         3468888777 7775        88888776665443

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.38  E-value=9e-07  Score=80.05  Aligned_cols=107  Identities=19%  Similarity=0.166  Sum_probs=81.0

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHH-hCCCC-CCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRL-NERQV-KTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~-n~~~l-~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      ....++||.+|+|.|..+..+++.  ..+|++||+++..++.+++.... ++..+ +.+++++.+|+++++...      
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~------  148 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT------  148 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC------
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc------
Confidence            346679999999999999999874  35999999999999999998743 21001 248999999999998753      


Q ss_pred             hhcccCCCCCCCCcccEEEECChh-----------hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLPA-----------TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP~-----------~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                                 ..+||+|++|+++           ...+|.+.++. |+++        |++.+.+-+
T Consensus       149 -----------~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~--------Gvlv~~~~s  197 (312)
T d1uira_         149 -----------EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG--------GVMGMQTGM  197 (312)
T ss_dssp             -----------CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE--------EEEEEEEEE
T ss_pred             -----------CCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCC--------ceEEEecCC
Confidence                       2459999998732           13578888877 8776        777665433

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.34  E-value=1.7e-06  Score=76.69  Aligned_cols=112  Identities=8%  Similarity=0.050  Sum_probs=86.7

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHHhCCCC-CCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-G-AIVAANDLNPDSYAWLQASIRLNERQV-KTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g-~~V~avD~~~~a~~~a~~N~~~n~~~l-~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ....++||-+|.|.|..+..+++. + .+|+.||++|..++.+++-...+...+ +.+++++.+|++.++...       
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~-------  145 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS-------  145 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC-------
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc-------
Confidence            346689999999999999999984 4 499999999999999999775432102 248999999999998753       


Q ss_pred             hcccCCCCCCCCcccEEEECChhh--------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCCh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT--------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDL  296 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~--------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~  296 (324)
                                ..+||+||+|++..        ..+|.+.++. |+++        |++...+-++...+
T Consensus       146 ----------~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~--------Gv~v~q~~s~~~~~  196 (274)
T d1iy9a_         146 ----------ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED--------GIFVAQTDNPWFTP  196 (274)
T ss_dssp             ----------CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE--------EEEEEECCCTTTCH
T ss_pred             ----------CCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCC--------ceEEEecCCccccH
Confidence                      24699999997662        5688888877 8876        77777665544333

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.33  E-value=1.3e-07  Score=89.12  Aligned_cols=95  Identities=18%  Similarity=0.207  Sum_probs=69.3

Q ss_pred             eeecCcChHHHHHHHhhc--cCCCEEEEEcCCCchhHHHHHhc----C-----------CEEEEEeCCHHHHHHHHHHHH
Q psy16898        143 VYWNSRLSTEHERVTKEV--REGDLVLDVFAGVGPFSIPAARR----G-----------AIVAANDLNPDSYAWLQASIR  205 (324)
Q Consensus       143 ~f~~~r~~~e~~~~~~~~--~~g~~VLDl~~G~G~~al~~a~~----g-----------~~V~avD~~~~a~~~a~~N~~  205 (324)
                      -|+.|+...+  .+++.+  .++.+|+|.+||+|+|.+.+.++    +           ..++|+|+++.++..|+.|+.
T Consensus       143 ~f~TP~~Iv~--~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~  220 (425)
T d2okca1         143 QYFTPRPLIQ--AMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY  220 (425)
T ss_dssp             GGCCCHHHHH--HHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred             hhccchhhhH--hhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhh
Confidence            3566663322  234443  45789999999999999998762    1           249999999999999999999


Q ss_pred             HhCCCCC-CCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        206 LNERQVK-TPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       206 ~n~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      .++  +. .+..+.++|..+..                   ....||.||+|||..
T Consensus       221 l~g--~~~~~~~i~~~d~l~~~-------------------~~~~fD~Ii~NPPfg  255 (425)
T d2okca1         221 LHG--IGTDRSPIVCEDSLEKE-------------------PSTLVDVILANPPFG  255 (425)
T ss_dssp             HTT--CCSSCCSEEECCTTTSC-------------------CSSCEEEEEECCCSS
T ss_pred             hcC--CccccceeecCchhhhh-------------------cccccceEEecCCCC
Confidence            988  64 24556777765311                   124699999999994

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.29  E-value=2.7e-06  Score=76.67  Aligned_cols=112  Identities=13%  Similarity=0.072  Sum_probs=83.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHHhCCCCC-CCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR-G-AIVAANDLNPDSYAWLQASIRLNERQVK-TPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~-g-~~V~avD~~~~a~~~a~~N~~~n~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ....++||-+|.|.|..+..+++. . .+|++||+++..++.+++-...+...+. .+++++.+|+++++...       
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~-------  176 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH-------  176 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC-------
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhC-------
Confidence            346679999999999999999984 3 5999999999999999987654321021 48999999999998753       


Q ss_pred             hcccCCCCCCCCcccEEEECChhh--------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCCh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT--------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDL  296 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~--------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~  296 (324)
                                ..+||+||+|++..        +.+|.+.++. |+++        |++...+-+.....
T Consensus       177 ----------~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~--------Gi~v~q~~s~~~~~  227 (312)
T d2b2ca1         177 ----------KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKED--------GILSSQGESVWLHL  227 (312)
T ss_dssp             ----------TTCEEEEEECCC-------------HHHHHHHHEEEE--------EEEEEECCCTTTCH
T ss_pred             ----------CCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCC--------cEEEEecCChHHhH
Confidence                      24599999997552        3467777776 7775        88877765554443

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=2.4e-06  Score=76.14  Aligned_cols=111  Identities=14%  Similarity=0.130  Sum_probs=83.4

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHHhCCCC-CCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR-G-AIVAANDLNPDSYAWLQASIRLNERQV-KTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~-g-~~V~avD~~~~a~~~a~~N~~~n~~~l-~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      ...++||-+|.|.|..+..+.+. + .+|+.+|++|..++.+++-...+.... +.+++++.+|++.++...        
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~--------  148 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN--------  148 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC--------
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcC--------
Confidence            45689999999999999999984 3 499999999999999998765432002 248999999999998752        


Q ss_pred             cccCCCCCCCCcccEEEECChhh--------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCCh
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPAT--------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDL  296 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~--------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~  296 (324)
                               ..+||+||+|++..        ..+|.+.++. |+++        |++.+.+-++....
T Consensus       149 ---------~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~--------Gi~v~q~~s~~~~~  199 (285)
T d2o07a1         149 ---------QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKED--------GVLCCQGECQWLHL  199 (285)
T ss_dssp             ---------SSCEEEEEEECC-----------CHHHHHHHHHEEEE--------EEEEEEEECTTTCH
T ss_pred             ---------CCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCC--------CeEEEeccchhhhH
Confidence                     24699999997641        2357777766 7765        88877766655443

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.26  E-value=1e-06  Score=74.71  Aligned_cols=70  Identities=17%  Similarity=0.176  Sum_probs=52.1

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      ..++++|||+|||+|.|.+.+.++   ...++|+|+++.++..            ..+..++++|......         
T Consensus        17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~------------~~~~~~~~~~~~~~~~---------   75 (223)
T d2ih2a1          17 APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL------------PPWAEGILADFLLWEP---------   75 (223)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC------------CTTEEEEESCGGGCCC---------
T ss_pred             CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh------------cccceeeeeehhcccc---------
Confidence            457889999999999999888762   4589999999875432            2245677887654211         


Q ss_pred             hcccCCCCCCCCcccEEEECChhh
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                                ...||.|++|||..
T Consensus        76 ----------~~~fd~ii~npP~~   89 (223)
T d2ih2a1          76 ----------GEAFDLILGNPPYG   89 (223)
T ss_dssp             ----------SSCEEEEEECCCCC
T ss_pred             ----------ccccceecccCccc
Confidence                      24599999999973

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.21  E-value=3.7e-06  Score=75.09  Aligned_cols=112  Identities=13%  Similarity=0.056  Sum_probs=85.9

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHHhCCCC-CCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR-G-AIVAANDLNPDSYAWLQASIRLNERQV-KTPISATQKDARDFLQTDARAHLVRW  237 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~-g-~~V~avD~~~~a~~~a~~N~~~n~~~l-~~~v~~~~~D~~~~~~~~~~~~~~~~  237 (324)
                      ...++||=+|.|.|..+..+++. + .+|++||+++..++.+++-...+.... +.+++++.+|+++++.+..       
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~-------  151 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAA-------  151 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSC-------
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhcc-------
Confidence            45679999999999999999985 4 499999999999999998664332001 2489999999999987531       


Q ss_pred             cccCCCCCCCCcccEEEECChhh--------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCCh
Q psy16898        238 SQSEGNSTGGTAVARVIMNLPAT--------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDL  296 (324)
Q Consensus       238 ~~~~~~~~~~~~fD~Vi~npP~~--------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~  296 (324)
                               ..+||+||+|++..        ..+|.+.++. |+++        |++.+.+-+.....
T Consensus       152 ---------~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~--------Gi~v~q~~s~~~~~  202 (290)
T d1xj5a_         152 ---------EGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG--------GVVCTQAESLWLHM  202 (290)
T ss_dssp             ---------TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE--------EEEEEECCCTTTCH
T ss_pred             ---------ccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCC--------cEEEEecCCcHHHH
Confidence                     13599999997652        4678888877 8876        88888776665444

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=8.1e-07  Score=85.87  Aligned_cols=111  Identities=16%  Similarity=0.155  Sum_probs=73.7

Q ss_pred             eeecCcChHHHHHHHhh--ccCCCEEEEEcCCCchhHHHHHhc----C----------------CEEEEEeCCHHHHHHH
Q psy16898        143 VYWNSRLSTEHERVTKE--VREGDLVLDVFAGVGPFSIPAARR----G----------------AIVAANDLNPDSYAWL  200 (324)
Q Consensus       143 ~f~~~r~~~e~~~~~~~--~~~g~~VLDl~~G~G~~al~~a~~----g----------------~~V~avD~~~~a~~~a  200 (324)
                      -|+.|+...+  .+++.  ..++.+|+|.+||+|+|.+.+.+.    .                ..++|+|+++.++..|
T Consensus       145 qfyTP~~Iv~--~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la  222 (524)
T d2ar0a1         145 QYFTPRPLIK--TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA  222 (524)
T ss_dssp             CCCCCHHHHH--HHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred             hhccccchhH--hhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHH
Confidence            3666763322  23343  346789999999999999888762    1                1589999999999999


Q ss_pred             HHHHHHhCCCCCCC----eEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh---------------
Q psy16898        201 QASIRLNERQVKTP----ISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA---------------  261 (324)
Q Consensus       201 ~~N~~~n~~~l~~~----v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a---------------  261 (324)
                      +.|+...+  ...+    -.+..++...-   ...              ...+||+||+|||...               
T Consensus       223 ~~nl~l~~--~~~~i~~~~~~~~~~~l~~---d~~--------------~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~  283 (524)
T d2ar0a1         223 LMNCLLHD--IEGNLDHGGAIRLGNTLGS---DGE--------------NLPKAHIVATNPPFGSAAGTNITRTFVHPTS  283 (524)
T ss_dssp             HHHHHTTT--CCCBGGGTBSEEESCTTSH---HHH--------------TSCCEEEEEECCCCTTCSSCCCCSCCSSCCS
T ss_pred             HHHHHhhc--ccccccccchhhhhhhhhh---ccc--------------ccccceeEEecCCccccccccchhhhccccc
Confidence            99999877  5421    12333333321   111              0245999999999952               


Q ss_pred             ---HHHHHHHhc-cchh
Q psy16898        262 ---VEYVRYLKV-LTRE  274 (324)
Q Consensus       262 ---~~~l~~~~~-l~~~  274 (324)
                         ..|+..+.. |+++
T Consensus       284 ~~~~~Fi~~~l~~Lk~g  300 (524)
T d2ar0a1         284 NKQLCFMQHIIETLHPG  300 (524)
T ss_dssp             CHHHHHHHHHHHHEEEE
T ss_pred             cccHHHHHHHHHhcccc
Confidence               237777766 7765

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=98.17  E-value=2.8e-07  Score=80.67  Aligned_cols=84  Identities=14%  Similarity=0.035  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcC------------------------------------------CEEEEEeCCHHHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRG------------------------------------------AIVAANDLNPDSYAW  199 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g------------------------------------------~~V~avD~~~~a~~~  199 (324)
                      .+..++|.|||+|+|.+.+|-.+                                          ..++|.|+++.+++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            44579999999999999987521                                          135688888889888


Q ss_pred             H---HHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898        200 L---QASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT  260 (324)
Q Consensus       200 a---~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~  260 (324)
                      |   ++|++.-+  +.+.+++...|+++........             .+...++||+|||+.
T Consensus       130 A~~~r~n~~~Ag--l~~~i~i~~~d~f~~~~~~~~~-------------~~~~~GlIVtNPPYG  178 (249)
T d1o9ga_         130 ARRLRERLTAEG--GALPCAIRTADVFDPRALSAVL-------------AGSAPDVVLTDLPYG  178 (249)
T ss_dssp             HHHHHHHHHHTT--SSCCEEEEECCTTCGGGHHHHH-------------TTCCCSEEEEECCGG
T ss_pred             HHHHHHHHHHcC--CCceeeeeecchhccCcchhcc-------------CCCCCCEEEeCCCcc
Confidence            8   56888888  8888999999987643321110             023479999999995

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.89  E-value=1.1e-05  Score=69.52  Aligned_cols=50  Identities=26%  Similarity=0.376  Sum_probs=44.8

Q ss_pred             HHhhc-cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHH
Q psy16898        156 VTKEV-REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIR  205 (324)
Q Consensus       156 ~~~~~-~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~  205 (324)
                      +++.. .+|+.|||.|||+|+.++++.+.|.+.+|+|++++.++.|++++.
T Consensus       205 lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         205 IIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            44443 589999999999999999999999999999999999999998875

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=5.7e-05  Score=62.43  Aligned_cols=122  Identities=22%  Similarity=0.155  Sum_probs=75.2

Q ss_pred             hccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        159 EVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      .++++.+||||||+.|+|+..++++   ...|+++|+.+.           ..  ++ ++.++.+|..+...........
T Consensus        19 l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~--i~-~~~~~~~d~~~~~~~~~~~~~~   84 (180)
T d1ej0a_          19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DP--IV-GVDFLQGDFRDELVMKALLERV   84 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CC--CT-TEEEEESCTTSHHHHHHHHHHH
T ss_pred             ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cc--cC-CceEeecccccchhhhhhhhhc
Confidence            3678999999999999999998873   248999998872           34  54 7899999986643322111111


Q ss_pred             hhcccCCCCCCCCcccEEEECCh-hh-hHHHHHHHhc--c--chhh--cCCCCCCCEEEEEEcccCCChhHHhHhhh
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLP-AT-AVEYVRYLKV--L--TREE--FGKLSRPPVLYLYCFLPKMDLETKKKIKS  304 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP-~~-a~~~l~~~~~--l--~~~~--~~~~~~~g~vh~y~f~~~~~~~~~~~v~~  304 (324)
                      .          ...+|+|++|.. .. .....+....  |  ....  ...+++||.+.+-.|...+.......++.
T Consensus        85 ~----------~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~  151 (180)
T d1ej0a_          85 G----------DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS  151 (180)
T ss_dssp             T----------TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH
T ss_pred             c----------CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHh
Confidence            0          245999999953 31 1111111111  0  0000  11234569999999987665555555543

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=4.9e-06  Score=72.98  Aligned_cols=47  Identities=13%  Similarity=0.098  Sum_probs=39.8

Q ss_pred             CCCEEEEEcCCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhC
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQASIRLNE  208 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~  208 (324)
                      +|.+|||+|||+|.+++..+. .+.+|+|+|.|+.|++.++++++...
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~  101 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEP  101 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCT
T ss_pred             CCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCc
Confidence            678999999999999876665 45599999999999999999876443

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=3.9e-05  Score=64.91  Aligned_cols=98  Identities=18%  Similarity=0.168  Sum_probs=74.6

Q ss_pred             CCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      ++++++|+|||.|-=|+++|-  ...+|+.+|.+..-+..+++-+...+  +. |+++++..+.++..            
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~--L~-nv~v~~~R~E~~~~------------  129 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK--LE-NIEPVQSRVEEFPS------------  129 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT--CS-SEEEEECCTTTSCC------------
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcC--Cc-ceeeeccchhhhcc------------
Confidence            567999999999999999886  46799999999999999999888888  87 89999999887422            


Q ss_pred             cCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898        240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYC  289 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~  289 (324)
                             ...||+|++--=.....+++.... ++++        |.+.++-
T Consensus       130 -------~~~fD~V~sRA~~~~~~ll~~~~~~l~~~--------g~~~~~K  165 (207)
T d1jsxa_         130 -------EPPFDGVISRAFASLNDMVSWCHHLPGEQ--------GRFYALK  165 (207)
T ss_dssp             -------CSCEEEEECSCSSSHHHHHHHHTTSEEEE--------EEEEEEE
T ss_pred             -------ccccceehhhhhcCHHHHHHHHHHhcCCC--------cEEEEEC
Confidence                   135999988533333346666655 4443        6655554

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.72  E-value=1.5e-05  Score=70.51  Aligned_cols=54  Identities=20%  Similarity=0.239  Sum_probs=46.1

Q ss_pred             HHHhh-ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhC
Q psy16898        155 RVTKE-VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNE  208 (324)
Q Consensus       155 ~~~~~-~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~  208 (324)
                      ++++. -.+|+.|||.|||+|+.+++|.+.|.+.+|+|+++++++.|++.+..+.
T Consensus       242 rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~~~  296 (320)
T d1booa_         242 FFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNN  296 (320)
T ss_dssp             HHHHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             HhhhhcccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHhcc
Confidence            34443 4589999999999999999999999999999999999999987765444

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.68  E-value=3e-05  Score=67.43  Aligned_cols=52  Identities=27%  Similarity=0.392  Sum_probs=46.2

Q ss_pred             HHHhh-ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH
Q psy16898        155 RVTKE-VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRL  206 (324)
Q Consensus       155 ~~~~~-~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~  206 (324)
                      ++++. -.+|+.|||.|||+|+.++++.+.|.+.+|+|+++..++.|++++..
T Consensus       199 ~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         199 RLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             HHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHH
T ss_pred             HHHHhhcCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHH
Confidence            34444 35899999999999999999999999999999999999999998874

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=97.47  E-value=4.3e-05  Score=68.23  Aligned_cols=71  Identities=20%  Similarity=0.281  Sum_probs=55.1

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .+.+|+|||||.|++++.+-+.|. -|.|+|+++.|++..+.|..  .  .      .++|+.++....           
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~--~--~------~~~Di~~~~~~~-----------   68 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG--E--K------PEGDITQVNEKT-----------   68 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS--C--C------CBSCGGGSCGGG-----------
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCC--C--C------CcCchhcCchhh-----------
Confidence            567999999999999999988888 56789999999999988762  2  1      147776653321           


Q ss_pred             CCCCCCCCcccEEEECChh
Q psy16898        241 EGNSTGGTAVARVIMNLPA  259 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP~  259 (324)
                            ...+|+++.-||.
T Consensus        69 ------~~~~Dll~ggpPC   81 (327)
T d2c7pa1          69 ------IPDHDILCAGFPC   81 (327)
T ss_dssp             ------SCCCSEEEEECCC
T ss_pred             ------cceeeeeeccccc
Confidence                  1248999999987

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=97.45  E-value=6.1e-05  Score=66.70  Aligned_cols=69  Identities=14%  Similarity=0.276  Sum_probs=53.3

Q ss_pred             EEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCC
Q psy16898        165 LVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGN  243 (324)
Q Consensus       165 ~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~  243 (324)
                      +|+|||||.|++++.+-+.|. .|.|+|+++.|.+..+.|.       +  -.++.+|+.++....              
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~-------~--~~~~~~Di~~~~~~~--------------   58 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-------S--AKLIKGDISKISSDE--------------   58 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC-------C--SEEEESCTTTSCGGG--------------
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-------C--CCCccCChhhCCHhH--------------
Confidence            699999999999998888888 5669999999988877653       1  345778887753321              


Q ss_pred             CCCCCcccEEEECChh
Q psy16898        244 STGGTAVARVIMNLPA  259 (324)
Q Consensus       244 ~~~~~~fD~Vi~npP~  259 (324)
                         ....|+++.-||.
T Consensus        59 ---~~~~dll~~g~PC   71 (324)
T d1dcta_          59 ---FPKCDGIIGGPPC   71 (324)
T ss_dssp             ---SCCCSEEEECCCC
T ss_pred             ---cccccEEeecccc
Confidence               1248999998887

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00013  Score=65.06  Aligned_cols=75  Identities=17%  Similarity=0.211  Sum_probs=54.5

Q ss_pred             CEEEEEcCCCchhHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898        164 DLVLDVFAGVGPFSIPAARRGA---IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS  240 (324)
Q Consensus       164 ~~VLDl~~G~G~~al~~a~~g~---~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~  240 (324)
                      .+|+|||||.|++++.+-+.|.   -|.|+|+++.|.+..+.|.       + ...++++|+.++.......        
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-------~-~~~~~~~di~~~~~~~~~~--------   66 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-------P-HTQLLAKTIEGITLEEFDR--------   66 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-------T-TSCEECSCGGGCCHHHHHH--------
T ss_pred             CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-------C-CCCcccCchhhCCHhHcCC--------
Confidence            4799999999999988877674   3789999999998877653       1 3557788888764443321        


Q ss_pred             CCCCCCCCcccEEEECChhhh
Q psy16898        241 EGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       241 ~~~~~~~~~fD~Vi~npP~~a  261 (324)
                             ..+|+++.-||..+
T Consensus        67 -------~~~Dll~ggpPCq~   80 (343)
T d1g55a_          67 -------LSFDMILMSPPCQP   80 (343)
T ss_dssp             -------HCCSEEEECCC---
T ss_pred             -------CCccEEEeeccccc
Confidence                   13899999999843

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.33  E-value=0.0007  Score=58.12  Aligned_cols=95  Identities=16%  Similarity=0.064  Sum_probs=71.1

Q ss_pred             CCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      .+.+++|+|||.|-=|+.+|-  ...+|+.+|.+..-+..+++-+..-+  +. ++.+++..+.++.....         
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~--L~-n~~i~~~R~E~~~~~~~---------  137 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ--LE-NTTFCHDRAETFGQRKD---------  137 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT--CS-SEEEEESCHHHHTTCTT---------
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhC--CC-CcEEEeehhhhcccccc---------
Confidence            567999999999999999885  46699999999999999998888888  87 89999999987643211         


Q ss_pred             cCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchh
Q psy16898        240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTRE  274 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~  274 (324)
                            ....||.|++=-=.....+++.... ++++
T Consensus       138 ------~~~~~D~v~sRAva~l~~ll~~~~~~l~~~  167 (239)
T d1xdza_         138 ------VRESYDIVTARAVARLSVLSELCLPLVKKN  167 (239)
T ss_dssp             ------TTTCEEEEEEECCSCHHHHHHHHGGGEEEE
T ss_pred             ------ccccceEEEEhhhhCHHHHHHHHhhhcccC
Confidence                  0245999987432222346666655 4443

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=0.00026  Score=63.62  Aligned_cols=59  Identities=24%  Similarity=0.318  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFL  226 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~  226 (324)
                      ++..|||+|.|.|.++..+..++  .+|+++|+++..++.+++...  +    ++++++++|+..+-
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~--~----~~~~ii~~D~l~~~  103 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE--G----SPLQILKRDPYDWS  103 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT--T----SSCEEECSCTTCHH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc--C----CCcEEEeCchhhcc
Confidence            56789999999999999998753  399999999999999886542  2    37899999998763

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.25  E-value=0.00028  Score=60.90  Aligned_cols=92  Identities=13%  Similarity=0.047  Sum_probs=64.6

Q ss_pred             cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898        161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS  238 (324)
Q Consensus       161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  238 (324)
                      ....+|||+|||+|.+++.++++  +.+++..|+- ..++       ...  ..++++++.+|.++-+            
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~-------~~~--~~~ri~~~~gd~~~~~------------  137 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVIE-------NAP--PLSGIEHVGGDMFASV------------  137 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHT-------TCC--CCTTEEEEECCTTTCC------------
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhhh-------ccC--CCCCeEEecCCccccc------------
Confidence            34579999999999999999984  6699999984 3332       223  3458999999976421            


Q ss_pred             ccCCCCCCCCcccEEEEC------ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898        239 QSEGNSTGGTAVARVIMN------LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL  291 (324)
Q Consensus       239 ~~~~~~~~~~~fD~Vi~n------pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~  291 (324)
                               ...|.+++-      ++......|..++. ++++        |.+.+..+.
T Consensus       138 ---------p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pg--------g~llI~e~v  180 (244)
T d1fp1d2         138 ---------PQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPN--------GKVIIVEFI  180 (244)
T ss_dssp             ---------CCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEE--------EEEEEEEEE
T ss_pred             ---------ccceEEEEehhhhhCCHHHHHHHHHHHHHHcCCC--------cEEEEEEEE
Confidence                     125888773      33446677777776 8775        666666554

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.87  E-value=0.00069  Score=58.29  Aligned_cols=82  Identities=13%  Similarity=0.104  Sum_probs=59.8

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ  239 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~  239 (324)
                      ...+|||+|||+|.+++.++++  +.+++..|+ |..++.       -+  ..++++++.+|.++-.             
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~-------~~--~~~rv~~~~gD~f~~~-------------  136 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVEN-------LS--GSNNLTYVGGDMFTSI-------------  136 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT-------CC--CBTTEEEEECCTTTCC-------------
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHh-------Cc--ccCceEEEecCcccCC-------------
Confidence            4578999999999999999984  679999998 444332       23  4468999999986511             


Q ss_pred             cCCCCCCCCcccEEEE-----CChh-hhHHHHHHHhc-cchh
Q psy16898        240 SEGNSTGGTAVARVIM-----NLPA-TAVEYVRYLKV-LTRE  274 (324)
Q Consensus       240 ~~~~~~~~~~fD~Vi~-----npP~-~a~~~l~~~~~-l~~~  274 (324)
                              ..+|++++     |-|. .+...|..++. ++++
T Consensus       137 --------p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pg  170 (244)
T d1fp2a2         137 --------PNADAVLLKYILHNWTDKDCLRILKKCKEAVTND  170 (244)
T ss_dssp             --------CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGG
T ss_pred             --------CCCcEEEEEeecccCChHHHHHHHHHHHHHcCcc
Confidence                    23788877     4333 45678887776 8775

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=96.12  E-value=0.0083  Score=54.95  Aligned_cols=49  Identities=14%  Similarity=0.029  Sum_probs=42.8

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHh--c--CCEEEEEeCCHHHHHHHHHHHHHhC
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAAR--R--GAIVAANDLNPDSYAWLQASIRLNE  208 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~--~--g~~V~avD~~~~a~~~a~~N~~~n~  208 (324)
                      +.++++++|+||..|.++..+++  .  +.+|+|+|.+|..++.+++|++.|+
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~  262 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYT  262 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcc
Confidence            34788999999999999987765  2  3599999999999999999999886

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.02  E-value=0.0047  Score=52.69  Aligned_cols=53  Identities=13%  Similarity=-0.048  Sum_probs=41.1

Q ss_pred             CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      ...+|||+|||+|.+++.++++  +.+++..|+-+. +       ....  ..++++++.+|.++
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-------~~~~--~~~r~~~~~~d~~~  135 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-------EDAP--SYPGVEHVGGDMFV  135 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-------TTCC--CCTTEEEEECCTTT
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-------hhcc--cCCceEEecccccc
Confidence            3569999999999999999994  679999998653 2       1222  33589999999764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.75  E-value=0.016  Score=46.55  Aligned_cols=43  Identities=28%  Similarity=0.277  Sum_probs=34.9

Q ss_pred             ccCCCEEEEEcCC-CchhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898        160 VREGDLVLDVFAG-VGPFSIPAAR-RGA-IVAANDLNPDSYAWLQA  202 (324)
Q Consensus       160 ~~~g~~VLDl~~G-~G~~al~~a~-~g~-~V~avD~~~~a~~~a~~  202 (324)
                      +++|++||-.||| +|.+++.+|+ .|+ +|+++|.+++.++.+++
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~   71 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE   71 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCccchhheeccccccccccccccccccccccccc
Confidence            5689999999886 3556666666 687 89999999999998864

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=95.68  E-value=0.0034  Score=53.81  Aligned_cols=33  Identities=21%  Similarity=0.106  Sum_probs=28.4

Q ss_pred             ccCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeC
Q psy16898        160 VREGDLVLDVFAGVGPFSIPAARRG--AIVAANDL  192 (324)
Q Consensus       160 ~~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~  192 (324)
                      +.++.+|+|||||.|+++-.++.+.  ..|.|.++
T Consensus        64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i   98 (257)
T d2p41a1          64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK   98 (257)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred             ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence            5678899999999999999999753  47888887

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.018  Score=45.92  Aligned_cols=44  Identities=25%  Similarity=0.206  Sum_probs=35.9

Q ss_pred             hccCCCEEEEEcC--CCchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFA--GVGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~--G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||-.|+  |+|..++.+|+ .|++|++++.+++..+.+++
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~   71 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ   71 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEEeccccccccccccccccCcccccccccccccccccc
Confidence            3679999999986  57777888887 68899999999988777653

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.36  E-value=0.0058  Score=48.78  Aligned_cols=44  Identities=16%  Similarity=0.027  Sum_probs=36.9

Q ss_pred             hccCCCEEEEEcCC-CchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAG-VGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G-~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||-+||| +|.+++.+|+ .|++|+++|.|++.++.+++
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~   69 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK   69 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhc
Confidence            47799999999987 6777777776 68999999999998888764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.29  E-value=0.014  Score=46.84  Aligned_cols=44  Identities=23%  Similarity=0.296  Sum_probs=35.9

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||=+|||. |.+++.+|+ .|+ +|+++|.++.-++.+++
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~   70 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF   70 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh
Confidence            477999999898875 677777777 576 89999999998888763

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.24  E-value=0.014  Score=46.36  Aligned_cols=44  Identities=32%  Similarity=0.392  Sum_probs=35.9

Q ss_pred             hccCCCEEEEEcCC-CchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAG-VGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G-~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||-+||| +|.+++.+|+ .|++|+++|.++.-++.|++
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~   68 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN   68 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHH
Confidence            46789999999877 5666666666 68899999999999988865

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.10  E-value=0.02  Score=46.85  Aligned_cols=41  Identities=20%  Similarity=0.144  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCCch----hHHHHHhc----C--CEEEEEeCCHHHHHHHHHH
Q psy16898        163 GDLVLDVFAGVGP----FSIPAARR----G--AIVAANDLNPDSYAWLQAS  203 (324)
Q Consensus       163 g~~VLDl~~G~G~----~al~~a~~----g--~~V~avD~~~~a~~~a~~N  203 (324)
                      .-+||++|||+|-    +++.+...    +  .+|+|.|+|+.+++.|++.
T Consensus        25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g   75 (193)
T d1af7a2          25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSG   75 (193)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHT
T ss_pred             CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcC
Confidence            3499999999996    44444431    2  2899999999999999753

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.14  Score=43.31  Aligned_cols=60  Identities=15%  Similarity=0.072  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCCCchhHHH----HHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIP----AARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~----~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      +|+++|=.|++.| ++..    +++.|++|+..+.+++.++.+.+.++..+  ...++.++.+|+.+
T Consensus         9 k~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~~~Dls~   72 (257)
T d1xg5a_           9 RDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG--YPGTLIPYRCDLSN   72 (257)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CSSEEEEEECCTTC
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEEEccCCC
Confidence            5788998887754 4544    44579999999999999999888887766  55578888999865

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.15  Score=40.05  Aligned_cols=44  Identities=30%  Similarity=0.302  Sum_probs=33.3

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++|+=+|||. |.+++.+++ .|+ +|+++|.++.-++.|++
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~   69 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE   69 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH
Confidence            467899999998853 333444454 688 89999999999888764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.62  E-value=0.11  Score=40.57  Aligned_cols=44  Identities=27%  Similarity=0.314  Sum_probs=33.5

Q ss_pred             hccCCCEEEEEcCC-CchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAG-VGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G-~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||=+||| +|.+++.+++ .|++|+++|.++.-++.+++
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~   69 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARK   69 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhc
Confidence            47799999998875 3444455555 58899999999999888754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.52  E-value=0.026  Score=46.18  Aligned_cols=44  Identities=39%  Similarity=0.434  Sum_probs=35.8

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||.+|||. |..++.+|+ .|+ +|+++|.++.-++.|++
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~   68 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA   68 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhh
Confidence            578999999999986 556666665 566 99999999999988764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.01  E-value=0.09  Score=40.98  Aligned_cols=44  Identities=20%  Similarity=0.240  Sum_probs=33.0

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||=.|||. |..++.+++ .|++|+++|.+++-++.+++
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~   69 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE   69 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh
Confidence            477999999887754 333444555 57899999999999888754

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.95  E-value=0.24  Score=41.86  Aligned_cols=61  Identities=20%  Similarity=0.223  Sum_probs=46.8

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      +|+++|=-|++.|   .++..+++.|++|+.+|.+++.++.+.+.+...+  -..++.++.+|+.+
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~~~Dvt~   66 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA--PDAEVLTTVADVSD   66 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHC--TTCCEEEEECCTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC--CCCeEEEEeccCCC
Confidence            4778888887655   3556666789999999999999988887776655  33468889999755

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.23  Score=41.70  Aligned_cols=60  Identities=18%  Similarity=0.106  Sum_probs=49.0

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=-|++.|   .++..+++.|++|+.+|.+++.++.+.++++..+    .++..+.+|+.+.
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~----~~~~~~~~Dvs~~   68 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG----AKVHTFVVDCSNR   68 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEEeeCCCH
Confidence            5788888887776   4566667789999999999999999999887655    3688999998765

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=93.66  E-value=0.23  Score=41.90  Aligned_cols=59  Identities=24%  Similarity=0.258  Sum_probs=45.7

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      +|+++|=-|++.|   .++..+++.|++|+.+|.+++.++.+.+.++..+  .  ++.++.+|+.+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~--~~~~~~~Dv~~   65 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG--V--EARSYVCDVTS   65 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--S--CEEEEECCTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--C--cEEEEEccCCC
Confidence            5788887776654   2445556689999999999999999888887665  3  58889999864

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.43  E-value=0.23  Score=42.32  Aligned_cols=62  Identities=23%  Similarity=0.189  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCC-CCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVK-TPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~-~~v~~~~~D~~~~  225 (324)
                      +|+++|=-|++.|   .++..+++.|++|+.+|.+++.++.+.+.+...+  .. .++.++.+|+.+.
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~~~~Dv~~~   68 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAG--VPAEKINAVVADVTEA   68 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCGGGEEEEECCTTSH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcceEEEEeeCCCH
Confidence            4778887777655   2344555679999999999999999998888776  43 3688999997653

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=93.08  E-value=0.52  Score=39.60  Aligned_cols=60  Identities=17%  Similarity=0.021  Sum_probs=47.0

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=.|+..|   .++..+++.|++|+.++.++..++.+.+.++..+  .  ++.++.+|+.+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~--~--~~~~~~~D~s~~   67 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--L--NVEGSVCDLLSR   67 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--C--CEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--C--CceEEEeecCCH
Confidence            6888888887655   3455566689999999999999988888887766  3  588888998553

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.05  E-value=0.25  Score=41.93  Aligned_cols=61  Identities=16%  Similarity=0.123  Sum_probs=46.3

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCC-CCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVK-TPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~-~~v~~~~~D~~~  224 (324)
                      +|+++|=.|++.|   .++..+++.|++|+.+|.+++.++.+.+.+...+  .. .++.++.+|+.+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~--~~~~~~~~~~~Dvs~   68 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSG--VSEKQVNSVVADVTT   68 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--CCGGGEEEEECCTTS
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCCCceEEEEccCCC
Confidence            4777887776654   3445555689999999999999999988887665  43 368899999765

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=92.97  E-value=0.23  Score=42.02  Aligned_cols=58  Identities=19%  Similarity=0.107  Sum_probs=42.9

Q ss_pred             CCCEEEEEcCCCchhHHH----HHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIP----AARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~----~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=.|++.| ++..    +++.|++|+.+|.+++.++.+.+.+...+     .+.++.+|+.+.
T Consensus         5 ~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-----~~~~~~~Dv~~~   66 (268)
T d2bgka1           5 QDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPD-----VISFVHCDVTKD   66 (268)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTT-----TEEEEECCTTCH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCC-----ceEEEEccCCCH
Confidence            5788888886655 5544    44579999999999998887776664333     678888998653

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.86  E-value=0.31  Score=41.04  Aligned_cols=60  Identities=13%  Similarity=0.105  Sum_probs=45.4

Q ss_pred             CCCEEEEEcCCCchhHHH----HHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCC-CCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIP----AARRGAIVAANDLNPDSYAWLQASIRLNERQVK-TPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~----~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~-~~v~~~~~D~~~  224 (324)
                      +|+++|=-|++ ++++..    +++.|++|+.++.+++.++.+.+.+...+  .. .++.++.+|+.+
T Consensus         4 ~gKvalVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~--~~~~~~~~~~~Dvt~   68 (264)
T d1spxa_           4 AEKVAIITGSS-NGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAG--VSEQNVNSVVADVTT   68 (264)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCGGGEEEEECCTTS
T ss_pred             CCCEEEEeCcC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCcCceEEEEccCCC
Confidence            46677766665 455544    44579999999999999999988887765  43 368999999854

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.78  E-value=0.3  Score=40.94  Aligned_cols=59  Identities=17%  Similarity=0.015  Sum_probs=45.3

Q ss_pred             CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +++++|=-|++. +++..+|+    .|++|+.+|.|++.++.+.+.++..+  .  ++.++.+|+.+.
T Consensus         9 enKvalITGas~-GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--~--~~~~~~~Dvt~~   71 (251)
T d2c07a1           9 ENKVALVTGAGR-GIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--Y--ESSGYAGDVSKK   71 (251)
T ss_dssp             SSCEEEEESTTS-HHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--C--CEEEEECCTTCH
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--C--cEEEEEccCCCH
Confidence            567777777655 46555554    68999999999999998888887655  3  588999998653

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=92.71  E-value=0.45  Score=39.83  Aligned_cols=58  Identities=14%  Similarity=0.095  Sum_probs=43.7

Q ss_pred             CCEEEEEcCCCchhHH----HHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        163 GDLVLDVFAGVGPFSI----PAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       163 g~~VLDl~~G~G~~al----~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      |+++|=-|++ ++++.    .+++.|++|+.++.+++.++.+.+.++..+  .  ++.++.+|+.+.
T Consensus         2 gKValITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g--~--~~~~~~~Dvs~~   63 (257)
T d2rhca1           2 SEVALVTGAT-SGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG--V--EADGRTCDVRSV   63 (257)
T ss_dssp             CCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--C--CEEEEECCTTCH
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--C--cEEEEEeecCCH
Confidence            5666666654 44454    455579999999999999999888887666  3  588999998653

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=92.53  E-value=0.045  Score=47.10  Aligned_cols=86  Identities=16%  Similarity=0.217  Sum_probs=65.3

Q ss_pred             HHhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898        156 VTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV  235 (324)
Q Consensus       156 ~~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~  235 (324)
                      +++.+.++. -+..|+|+-.++..+++..-+...+|+.|.-.+.+++|+...     .++.+.+.|..+.+.....    
T Consensus        77 ~v~~~n~~~-~l~~YPGSP~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~~~-----~~~~v~~~DG~~~l~allP----  146 (271)
T d2oo3a1          77 VIKQINLNS-TLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFN-----KKVYVNHTDGVSKLNALLP----  146 (271)
T ss_dssp             HHHHHSSSS-SCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTT-----SCEEEECSCHHHHHHHHCS----
T ss_pred             HHHHhCCCC-CcCcCCCCHHHHHHhCCCCCceEEeecCHHHHHHHHHHhccC-----CCceEEcCchHHHHHhhCC----
Confidence            344444433 247899999999999988889999999999999988776432     3799999999998876532    


Q ss_pred             hhcccCCCCCCCCcccEEEECChhhh
Q psy16898        236 RWSQSEGNSTGGTAVARVIMNLPATA  261 (324)
Q Consensus       236 ~~~~~~~~~~~~~~fD~Vi~npP~~a  261 (324)
                                +..+--.|++|||+-.
T Consensus       147 ----------P~~rRgLVLIDPpYE~  162 (271)
T d2oo3a1         147 ----------PPEKRGLIFIDPSYER  162 (271)
T ss_dssp             ----------CTTSCEEEEECCCCCS
T ss_pred             ----------CCCCceEEEecCCcCC
Confidence                      1234669999999853

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=92.36  E-value=0.48  Score=39.80  Aligned_cols=59  Identities=20%  Similarity=0.060  Sum_probs=45.2

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      +|+++|=-|++.|   .++..+++.|++|+.+|.|++.++.+.+.+...+  .  ++.++.+|+.+
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~--~~~~~~~Dv~~   68 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--F--KVEASVCDLSS   68 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--C--EEEEEECCTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--C--CceEEEeeCCC
Confidence            6888887776644   2344555579999999999999998888887666  3  58888899854

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.35  E-value=0.069  Score=42.67  Aligned_cols=44  Identities=27%  Similarity=0.295  Sum_probs=33.8

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++|+=.|||. |.+++.+++ .|+ +|+++|.+++-++.|++
T Consensus        26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~   72 (176)
T d1d1ta2          26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA   72 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh
Confidence            377999999998863 444455555 565 99999999999998875

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.32  E-value=0.36  Score=40.44  Aligned_cols=61  Identities=21%  Similarity=0.070  Sum_probs=44.1

Q ss_pred             CCCEEEEEcCCCchhHHHH----HhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPA----ARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~----a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      .|+++|=-|++. +++..+    ++.|++|+.+|.+++.++.+.+.+....  -..++.++.+|+.+.
T Consensus         2 ~GKvalITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dv~~~   66 (254)
T d2gdza1           2 NGKVALVTGAAQ-GIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF--EPQKTLFIQCDVADQ   66 (254)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS--CGGGEEEEECCTTSH
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc--CCCcEEEEEeecCCH
Confidence            477888888664 455554    4579999999999999888777665432  123688999998653

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.32  E-value=0.4  Score=40.26  Aligned_cols=58  Identities=21%  Similarity=0.150  Sum_probs=44.5

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      +|+++|=-|+ +++++..+|    +.|++|+.++.+++.++.+.+.++..+    .++.++.+|+.+
T Consensus        10 ~gK~alITGa-s~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g----~~~~~~~~Dvs~   71 (255)
T d1fmca_          10 DGKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG----GQAFACRCDITS   71 (255)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTC
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEccCCC
Confidence            6778876664 455655544    479999999999999999888887665    258889999865

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.04  E-value=0.079  Score=42.27  Aligned_cols=44  Identities=25%  Similarity=0.294  Sum_probs=35.6

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||=+|||. |.+++.+++ .|+ .|++.|.++.-++.+++
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~   71 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA   71 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH
Confidence            477999999998875 667777777 577 89999999998777664

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.93  E-value=0.51  Score=39.45  Aligned_cols=59  Identities=15%  Similarity=0.077  Sum_probs=43.8

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH-hCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRL-NERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~-n~~~l~~~v~~~~~D~~~  224 (324)
                      +|+++|=-|++.|   .++..+++.|++|+.+|.+++.++.+.+.+.. .+    .++.++.+|+.+
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g----~~~~~~~~Dv~~   66 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG----VETMAFRCDVSN   66 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC----CCEEEEECCTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC----CcEEEEEccCCC
Confidence            5788888887655   34555666899999999999988877766543 34    258888999864

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=91.83  E-value=0.32  Score=40.75  Aligned_cols=58  Identities=17%  Similarity=0.074  Sum_probs=42.1

Q ss_pred             CCCEEEEEcCCCchhH----HHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFS----IPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~a----l~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=-|++ ++++    ..+++.|++|+.+|.+++.++.+.+.+..     .+++.++.+|+.+.
T Consensus         5 ~gK~alVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~   66 (251)
T d1zk4a1           5 DGKVAIITGGT-LGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-----PDQIQFFQHDSSDE   66 (251)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-----TTTEEEEECCTTCH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-----CCcEEEEEccCCCH
Confidence            46777777755 4454    44555799999999999988877766532     23789999998653

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.62  E-value=0.16  Score=40.11  Aligned_cols=42  Identities=24%  Similarity=0.249  Sum_probs=32.6

Q ss_pred             ccCCCEEEEEc--CCCchhHHHHHh-cCCEEEEEeCCHHHHHHHH
Q psy16898        160 VREGDLVLDVF--AGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQ  201 (324)
Q Consensus       160 ~~~g~~VLDl~--~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~  201 (324)
                      +++|++||=.|  .|+|.+++.+|+ .|++|+++..+++-.+.++
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~   67 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS   67 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccc
Confidence            67899999865  456667777776 5889999999988777765

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=91.27  E-value=0.096  Score=41.66  Aligned_cols=44  Identities=18%  Similarity=0.148  Sum_probs=33.7

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||=+|||. |.+++.+++ .|+ +|+++|.+++-++.+++
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~   70 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE   70 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence            478999999998863 334444555 576 99999999999988864

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.24  E-value=0.62  Score=39.08  Aligned_cols=59  Identities=15%  Similarity=0.015  Sum_probs=45.8

Q ss_pred             CCCEEEEEcCCCch---hHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGP---FSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~---~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      +|+++|=-|++.|.   ++..+++.|++|+.++.+++.++.+.+.+...+  .  ++..+.+|+.+
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~--~--~~~~~~~Dv~~   68 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG--F--QVTGSVCDASL   68 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--C--CEEEEECCTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--C--ceEEEeccCCC
Confidence            67888888876552   445555689999999999999998888887665  3  58899999864

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=90.90  E-value=0.083  Score=44.40  Aligned_cols=60  Identities=15%  Similarity=0.034  Sum_probs=41.3

Q ss_pred             HHhhccCCCEEEEEcCCCchhHHHHHh------cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        156 VTKEVREGDLVLDVFAGVGPFSIPAAR------RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       156 ~~~~~~~g~~VLDl~~G~G~~al~~a~------~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      ++..++ .++||++|++.|.-++.++.      ..++|+++|+++......     .+.  . .+++++.+|..+
T Consensus        75 li~~~K-Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~~~--~-~~I~~i~gDs~~  140 (232)
T d2bm8a1          75 MLWELR-PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----ASD--M-ENITLHQGDCSD  140 (232)
T ss_dssp             HHHHHC-CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GGG--C-TTEEEEECCSSC
T ss_pred             HHHHhC-CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----hcc--c-cceeeeeccccc
Confidence            344444 56899999999987776653      246999999987543321     112  2 489999999754

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=90.84  E-value=0.89  Score=35.31  Aligned_cols=44  Identities=16%  Similarity=0.099  Sum_probs=32.5

Q ss_pred             hccCCCEEEEEcCCCc-hhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGVG-PFSIPAAR-RGA-IVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G-~~al~~a~-~g~-~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||-.|||.. .+++.+++ .|+ .|+++|.+++-++.+++
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~   75 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER   75 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh
Confidence            3678999999988643 33455555 465 99999999988887764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.70  E-value=0.46  Score=35.39  Aligned_cols=69  Identities=17%  Similarity=0.182  Sum_probs=46.7

Q ss_pred             CCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH--HHHHHHHhhhhhcccCCCC
Q psy16898        171 AGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF--LQTDARAHLVRWSQSEGNS  244 (324)
Q Consensus       171 ~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~--~~~~~~~~~~~~~~~~~~~  244 (324)
                      ||.|.+|..+++    .|..|+.+|.|++.++.+.+.   .+      +.++.||+.+.  +.+..              
T Consensus         6 ~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---~~------~~vi~Gd~~~~~~l~~~~--------------   62 (132)
T d1lssa_           6 AGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---ID------ALVINGDCTKIKTLEDAG--------------   62 (132)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---CS------SEEEESCTTSHHHHHHTT--------------
T ss_pred             ECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---hh------hhhccCcccchhhhhhcC--------------
Confidence            566899988886    588999999999988876432   12      56888998653  33221              


Q ss_pred             CCCCcccEEEECChhhhHHH
Q psy16898        245 TGGTAVARVIMNLPATAVEY  264 (324)
Q Consensus       245 ~~~~~fD~Vi~npP~~a~~~  264 (324)
                        -..+|.++.=.+......
T Consensus        63 --i~~a~~vv~~t~~d~~N~   80 (132)
T d1lssa_          63 --IEDADMYIAVTGKEEVNL   80 (132)
T ss_dssp             --TTTCSEEEECCSCHHHHH
T ss_pred             --hhhhhhhcccCCcHHHHH
Confidence              134788887555544443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.67  E-value=0.37  Score=37.85  Aligned_cols=44  Identities=25%  Similarity=0.262  Sum_probs=31.9

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||=+|||. |..++.+++ .|+ .|++.|.++.-++.+++
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~   71 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ   71 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH
Confidence            367999999988753 233444454 466 78899999998888764

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=90.50  E-value=0.82  Score=38.68  Aligned_cols=60  Identities=20%  Similarity=0.174  Sum_probs=43.8

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH-hCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRL-NERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~-n~~~l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=-|+..|   .++..+++.|++|+.+|.++..++.+.+.+.. .+    .++.++.+|+.+.
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g----~~~~~~~~D~~~~   87 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG----NKVHAIQCDVRDP   87 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS----SCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcC----CceEEEEecccCh
Confidence            5788888887655   34445555799999999999988877766643 34    2588888888653

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=90.41  E-value=1.6  Score=31.73  Aligned_cols=68  Identities=13%  Similarity=0.175  Sum_probs=50.9

Q ss_pred             CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEEC--Chh-h
Q psy16898        184 GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMN--LPA-T  260 (324)
Q Consensus       184 g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~n--pP~-~  260 (324)
                      |.+|.-+|-++...+.++.-++..|  +.  +.....|..+.+.....                ..||.|++|  +|. .
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g--~~--v~~~a~~~~~al~~~~~----------------~~~dliilD~~mp~~~   60 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAG--YE--VAGEATNGREAVEKYKE----------------LKPDIVTMDITMPEMN   60 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTT--CE--EEEEESSHHHHHHHHHH----------------HCCSEEEEECSCGGGC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcC--Cc--eEEEECCHHHHHHHHHh----------------ccCCEEEEecCCCCCC
Confidence            6789999999999999999888777  53  44456788777665543                249999998  466 3


Q ss_pred             hHHHHHHHhcc
Q psy16898        261 AVEYVRYLKVL  271 (324)
Q Consensus       261 a~~~l~~~~~l  271 (324)
                      +.+++..++..
T Consensus        61 G~e~~~~ir~~   71 (118)
T d1u0sy_          61 GIDAIKEIMKI   71 (118)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            66788777653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.17  E-value=0.24  Score=38.67  Aligned_cols=103  Identities=16%  Similarity=0.152  Sum_probs=60.4

Q ss_pred             hccCCCEEEEEcCC--CchhHHHHHh-cCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898        159 EVREGDLVLDVFAG--VGPFSIPAAR-RGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL  234 (324)
Q Consensus       159 ~~~~g~~VLDl~~G--~G~~al~~a~-~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~  234 (324)
                      .+++|++||=.||+  +|..++.+++ .|+ .|+++|.++.-++.+++    .+  .+   .++..+-.++..+....  
T Consensus        24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~G--a~---~~i~~~~~~~~~~~~~~--   92 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AG--AD---YVINASMQDPLAEIRRI--   92 (170)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HT--CS---EEEETTTSCHHHHHHHH--
T ss_pred             CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cC--Cc---eeeccCCcCHHHHHHHH--
Confidence            46799999999963  5555555555 564 99999999998888765    45  33   33444433443333221  


Q ss_pred             hhhcccCCCCCCCCcccEEEECChhhhHHHHHHH-hccchhhcCCCCCCCEEEEEEccc
Q psy16898        235 VRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYL-KVLTREEFGKLSRPPVLYLYCFLP  292 (324)
Q Consensus       235 ~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~-~~l~~~~~~~~~~~g~vh~y~f~~  292 (324)
                                +.+..+|.|+-.-..  ...++.. ..++++        |.+.++.+..
T Consensus        93 ----------~~~~~~d~vid~~g~--~~~~~~a~~~l~~~--------G~iv~~G~~~  131 (170)
T d1jvba2          93 ----------TESKGVDAVIDLNNS--EKTLSVYPKALAKQ--------GKYVMVGLFG  131 (170)
T ss_dssp             ----------TTTSCEEEEEESCCC--HHHHTTGGGGEEEE--------EEEEECCSSC
T ss_pred             ----------hhcccchhhhccccc--chHHHhhhhhcccC--------CEEEEecccc
Confidence                      113458877664432  2233333 335554        7777666543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=89.76  E-value=0.18  Score=39.46  Aligned_cols=44  Identities=27%  Similarity=0.184  Sum_probs=33.8

Q ss_pred             hccCCCEEEEEcCC-CchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAG-VGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G-~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||=.||| +|.+++.+|+ .|++++++|.+++-.+.+++
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~   72 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA   72 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhc
Confidence            47899999999875 3555566666 68899999999987777653

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=89.61  E-value=0.2  Score=39.39  Aligned_cols=44  Identities=18%  Similarity=0.083  Sum_probs=36.4

Q ss_pred             hccCCCEEEEEcCC--CchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAG--VGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G--~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||=.|+|  +|.+++.+|+ .|++|++++.+++-.+.+++
T Consensus        25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~   71 (179)
T d1qora2          25 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK   71 (179)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh
Confidence            36789999887544  7888888888 68999999999999888764

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.59  E-value=1.4  Score=37.62  Aligned_cols=63  Identities=10%  Similarity=0.056  Sum_probs=44.5

Q ss_pred             CCCEEEEEcCCCchhHHHH----HhcCCEEEEEeCCHHHHHHHHHHHHHhCCC-CCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPA----ARRGAIVAANDLNPDSYAWLQASIRLNERQ-VKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~----a~~g~~V~avD~~~~a~~~a~~N~~~n~~~-l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=-|++. +++..+    ++.|++|+.++.+++.++.+.+.+..+... ...++.++.+|+.+.
T Consensus        11 ~gKvalITGas~-GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~   78 (297)
T d1yxma1          11 QGQVAIVTGGAT-GIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNE   78 (297)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCH
Confidence            678888777654 455544    457999999999999988887777653200 123688999998653

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.54  E-value=0.5  Score=37.64  Aligned_cols=47  Identities=15%  Similarity=-0.038  Sum_probs=36.2

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhC
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNE  208 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~  208 (324)
                      +|++||=.|++.|   .++..+++.|++|+.++.+++.++.+.+.+..+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~   71 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF   71 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc
Confidence            7888888876544   2334555689999999999999999888887654

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.54  E-value=0.87  Score=37.93  Aligned_cols=58  Identities=19%  Similarity=0.103  Sum_probs=43.1

Q ss_pred             CCCEEEEEcCCCchhHHH----HHhcCCEEEE-EeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIP----AARRGAIVAA-NDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~----~a~~g~~V~a-vD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      .|++||=.| |+++++..    +++.|++|+. ...+....+.+.+.+..++  .  ++.++.+|+.+
T Consensus         5 ~GK~alITG-as~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g--~--~~~~~~~D~~~   67 (259)
T d1ja9a_           5 AGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--A--QGVAIQADISK   67 (259)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--C--CEEEEECCTTS
T ss_pred             CCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC--C--CceEecCCCCC
Confidence            588888666 55655554    4457998875 5678888888888888777  3  68899999865

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=89.25  E-value=1.1  Score=35.36  Aligned_cols=58  Identities=19%  Similarity=0.216  Sum_probs=41.4

Q ss_pred             CCCEEEEEcCCC-chhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHH
Q psy16898        162 EGDLVLDVFAGV-GPFSIPAAR-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFL  226 (324)
Q Consensus       162 ~g~~VLDl~~G~-G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~  226 (324)
                      +..+|+=+|+|+ |..++..|+ .|+.|+++|.+++.++.++.-..       .++++...+-..+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~-------~~~~~~~~~~~~l~   90 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG-------SRVELLYSNSAEIE   90 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-------GGSEEEECCHHHHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc-------ccceeehhhhhhHH
Confidence            456899999996 555666666 58999999999999988765332       13556666554443

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=89.17  E-value=0.81  Score=38.31  Aligned_cols=56  Identities=18%  Similarity=0.066  Sum_probs=41.0

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      +|+++|=-|++.|   .++..+++.|++|+.+|.+++.++.+.+.       +.+++.++.+|+.+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~Dv~~   62 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARE-------LGDAARYQHLDVTI   62 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-------TGGGEEEEECCTTC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------hCCceEEEEcccCC
Confidence            5788888888766   44555666899999999999876654332       22368889999864

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.03  E-value=0.94  Score=37.77  Aligned_cols=57  Identities=28%  Similarity=0.275  Sum_probs=40.0

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=-|++.|   .++..+++.|++|+.+|.+++.++.+.+.+   +    .++.++.+|+.+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~----~~~~~~~~Dvt~~   63 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI---G----PAACAIALDVTDQ   63 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH---C----TTEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C----CceEEEEeeCCCH
Confidence            4677887776654   334455557999999999998877665433   3    2578888988553

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=88.97  E-value=1.1  Score=37.41  Aligned_cols=60  Identities=22%  Similarity=0.117  Sum_probs=42.7

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCC-HHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLN-PDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~-~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=-|++.|   .++..+++.|++|+.++.+ +..++.+.+.++..+  .  ++.++.+|+.+.
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g--~--~~~~~~~Dvt~~   69 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG--G--EAIAVKGDVTVE   69 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--C--EEEEEECCTTSH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcC--C--cEEEEEccCCCH
Confidence            5778887776655   3344555679999999987 456777777777665  3  588899998653

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.95  E-value=1  Score=37.32  Aligned_cols=57  Identities=16%  Similarity=0.109  Sum_probs=41.4

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=-|++.|   .++..+++.|++|+.+|.+++.++.+.+.+.       +++.++.+|+.+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~Dv~~~   64 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-------DAARYVHLDVTQP   64 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-------GGEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh-------CcceEEEeecCCH
Confidence            5788888887765   3445566689999999999988776654432       3577888987553

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=88.94  E-value=1.3  Score=36.73  Aligned_cols=55  Identities=24%  Similarity=0.145  Sum_probs=41.3

Q ss_pred             EEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        166 VLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       166 VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +|=-|++ ++++..+|    +.|++|+.+|.+++.++.+.+.++..+  .  ++.++.+|+.+.
T Consensus         4 alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g--~--~~~~~~~Dv~~~   62 (255)
T d1gega_           4 ALVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--G--HAVAVKVDVSDR   62 (255)
T ss_dssp             EEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--C--CEEEEECCTTSH
T ss_pred             EEEcCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--C--cEEEEEeeCCCH
Confidence            4555544 55555544    579999999999999999888887666  3  688899998653

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.95  E-value=1.2  Score=37.09  Aligned_cols=56  Identities=18%  Similarity=0.087  Sum_probs=40.0

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=-|++.|   .++..+++.|++|+.+|.+++.++.+.+.       +. ++.++.+|+.+.
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~-------~~-~~~~~~~Dvs~~   63 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQE-------LP-GAVFILCDVTQE   63 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------CT-TEEEEECCTTSH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-------cC-CCeEEEccCCCH
Confidence            5788888887655   33455556799999999999887765432       22 477888888653

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=87.89  E-value=1.3  Score=36.88  Aligned_cols=59  Identities=14%  Similarity=0.141  Sum_probs=41.0

Q ss_pred             CCCEEEEEcCCCchhHH----HHHhcCCEEEEEeCC-HHHHHHHHHHHHHh-CCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSI----PAARRGAIVAANDLN-PDSYAWLQASIRLN-ERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al----~~a~~g~~V~avD~~-~~a~~~a~~N~~~n-~~~l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=-|++ ++++.    .+++.|++|+.++.+ +..++.+.+.+... +  .  ++.++.+|+.+.
T Consensus         3 ~gK~alITGas-~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g--~--~~~~~~~Dv~~~   67 (260)
T d1x1ta1           3 KGKVAVVTGST-SGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHG--V--KVLYDGADLSKG   67 (260)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHT--S--CEEEECCCTTSH
T ss_pred             CcCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcC--C--cEEEEECCCCCH
Confidence            57778865555 44454    455679999999986 56777776666433 4  2  688999998653

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=87.83  E-value=1.3  Score=36.82  Aligned_cols=56  Identities=21%  Similarity=0.178  Sum_probs=39.5

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      +|+++|=-|++.|   .++..+++.|++|+.+|.+++.++.+.+.+   +    .+..++.+|+.+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~----~~~~~~~~Dv~~   63 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---G----ERSMFVRHDVSS   63 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C----TTEEEECCCTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C----CCeEEEEeecCC
Confidence            5778887776554   334445557999999999998887765543   2    257788888765

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=87.76  E-value=1.7  Score=36.31  Aligned_cols=59  Identities=27%  Similarity=0.311  Sum_probs=44.1

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCC-HHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLN-PDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~-~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      +|+++|=.|++.|   .++..+++.|++|+..+.+ ++.++.+.+.++.++  .  ++.++.+|+.+
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g--~--~~~~~~~D~~~   79 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--S--DAACVKANVGV   79 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--C--CEEEEECCTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC--C--ceeeEeCCCCC
Confidence            5788888887665   3555666689999999987 567777777777666  3  58889998865

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.46  E-value=0.28  Score=38.34  Aligned_cols=44  Identities=25%  Similarity=0.350  Sum_probs=33.5

Q ss_pred             hccCCCEEEEEcCC-CchhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAG-VGPFSIPAAR-RGA-IVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G-~G~~al~~a~-~g~-~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||=.||| +|.+++.+++ .|+ .|+++|.+++-.+.+++
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~   71 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE   71 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH
Confidence            47899999988775 4455566666 565 99999999998887764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=87.45  E-value=1.2  Score=33.69  Aligned_cols=73  Identities=14%  Similarity=0.033  Sum_probs=48.4

Q ss_pred             CCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH--HHHHHHHhhhhhcccCCCC
Q psy16898        171 AGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF--LQTDARAHLVRWSQSEGNS  244 (324)
Q Consensus       171 ~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~--~~~~~~~~~~~~~~~~~~~  244 (324)
                      ||.|.+|..+++    .|..|+.+|.+++......+.....      .+.++.||+.+.  +.+..              
T Consensus         9 ~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~------~~~vi~Gd~~d~~~L~~a~--------------   68 (153)
T d1id1a_           9 CGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD------NADVIPGDSNDSSVLKKAG--------------   68 (153)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT------TCEEEESCTTSHHHHHHHT--------------
T ss_pred             ECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcC------CcEEEEccCcchHHHHHhc--------------
Confidence            677888888776    5789999999987655444444322      478999998663  22211              


Q ss_pred             CCCCcccEEEECChhhhHHHH
Q psy16898        245 TGGTAVARVIMNLPATAVEYV  265 (324)
Q Consensus       245 ~~~~~fD~Vi~npP~~a~~~l  265 (324)
                        ....|.||.-.+......+
T Consensus        69 --i~~a~~vi~~~~~d~~n~~   87 (153)
T d1id1a_          69 --IDRCRAILALSDNDADNAF   87 (153)
T ss_dssp             --TTTCSEEEECSSCHHHHHH
T ss_pred             --cccCCEEEEccccHHHHHH
Confidence              2348889887777544433

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=87.41  E-value=1.5  Score=36.17  Aligned_cols=56  Identities=20%  Similarity=0.169  Sum_probs=39.4

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      +|+++|=-|++.|   .++..+++.|++|+.+|.+++.++.+.+.+.  +     +...+..|+.+
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~--~-----~~~~~~~Dv~~   61 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG--A-----NGKGLMLNVTD   61 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG--G-----GEEEEECCTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC--C-----CCcEEEEEecC
Confidence            4777777776654   3344555579999999999998887765442  2     46777888754

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.04  E-value=1.7  Score=36.26  Aligned_cols=59  Identities=15%  Similarity=0.041  Sum_probs=44.5

Q ss_pred             CCEEEEEcCCCchhHHHHHh----c-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        163 GDLVLDVFAGVGPFSIPAAR----R-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       163 g~~VLDl~~G~G~~al~~a~----~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      |++|.=+=.|+++++..+|+    . |+.|+..+.+++.++.+.+.++..+  .  ++.++.+|+.+.
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~--~~~~~~~Dvs~~   65 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--L--SPRFHQLDIDDL   65 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--C--CCEEEECCTTCH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--C--cEEEEEEecCCH
Confidence            66675555566666655544    4 7799999999999999988887766  3  588999998654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.02  E-value=1  Score=37.33  Aligned_cols=56  Identities=25%  Similarity=0.149  Sum_probs=40.9

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=.|++.|   .++..+++.|++|+.+|.+++.++.+.+.       +. ++..+..|+.+.
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~-------~~-~~~~~~~Dv~d~   64 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE-------CP-GIEPVCVDLGDW   64 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------ST-TCEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHh-------cC-CCeEEEEeCCCH
Confidence            6889999987765   44555566899999999999877655432       22 467788888654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.91  E-value=1.8  Score=36.09  Aligned_cols=60  Identities=15%  Similarity=0.086  Sum_probs=44.0

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      +|+++|=-|++.|   .++..+++.|++|+.++.+++.++.+.+......  -. .+.++..|..+
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~--~~-~~~~~~~d~~~   75 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG--AA-SAHYIAGTMED   75 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT--CS-EEEEEECCTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhh--cc-cchhhhhhhhh
Confidence            6888988888776   3444555579999999999999998877765544  22 56777777643

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=86.85  E-value=0.41  Score=37.74  Aligned_cols=44  Identities=27%  Similarity=0.354  Sum_probs=34.9

Q ss_pred             hccCCCEEEEEcCC--CchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAG--VGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G--~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||=.+++  +|..++.+|+ .|++|+++..+++..+.+++
T Consensus        26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~   72 (182)
T d1v3va2          26 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ   72 (182)
T ss_dssp             CCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHh
Confidence            36789999976663  5677777887 68899999999988877654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.75  E-value=0.18  Score=39.69  Aligned_cols=44  Identities=32%  Similarity=0.367  Sum_probs=34.5

Q ss_pred             hccCCCEEEEEcC--CCchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFA--GVGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~--G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||=.|+  |+|.+++.+|+ .|++|++++.+++..+.+++
T Consensus        24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~   70 (171)
T d1iz0a2          24 QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA   70 (171)
T ss_dssp             TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH
T ss_pred             CCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc
Confidence            4679999998774  45677777777 68899999999987777653

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.68  E-value=1.3  Score=36.61  Aligned_cols=58  Identities=14%  Similarity=-0.003  Sum_probs=42.8

Q ss_pred             CCCEEEEEcCC----Cc-hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898        162 EGDLVLDVFAG----VG-PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD  224 (324)
Q Consensus       162 ~g~~VLDl~~G----~G-~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~  224 (324)
                      +|+++|=.|++    .| .++..+++.|++|+..+.++...+.+++.....+     +..++.+|+.+
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~   69 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG-----GALLFRADVTQ   69 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT-----CCEEEECCTTC
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccC-----cccccccccCC
Confidence            68899999964    34 3566677789999999999887777766555444     46778888754

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=86.06  E-value=0.41  Score=37.32  Aligned_cols=44  Identities=25%  Similarity=0.323  Sum_probs=33.1

Q ss_pred             hccCCCEEEEEcCCCchh-HHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGVGPF-SIPAAR-RGA-IVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~G~~-al~~a~-~g~-~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++|+=.|||.+.. ++.+++ .++ .|+++|.+++-++.+++
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence            478999999998887544 443444 455 99999999998887653

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=85.92  E-value=0.33  Score=38.07  Aligned_cols=44  Identities=25%  Similarity=0.282  Sum_probs=32.9

Q ss_pred             hccCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898        159 EVREGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQA  202 (324)
Q Consensus       159 ~~~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~~  202 (324)
                      .+++|++||=.|||- |..++.+++ .|+ +|+++|.+++-.+.+++
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~   71 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE   71 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH
Confidence            478999999998853 334444444 454 99999999998888754

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=85.66  E-value=1.3  Score=36.88  Aligned_cols=59  Identities=14%  Similarity=-0.026  Sum_probs=41.6

Q ss_pred             CCCEEEEEcCCCchhH----HHHHhcCCEEEEEeCCHHHHHHHHHHHH-HhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFS----IPAARRGAIVAANDLNPDSYAWLQASIR-LNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~a----l~~a~~g~~V~avD~~~~a~~~a~~N~~-~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=-|++ ++++    ..+++.|++|+.+|.+++.++.+.+.+. ..+    .++.++.+|+.+.
T Consensus         8 ~gK~alITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g----~~~~~~~~Dv~~~   71 (260)
T d1h5qa_           8 VNKTIIVTGGN-RGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG----VKTKAYQCDVSNT   71 (260)
T ss_dssp             TTEEEEEETTT-SHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT----CCEEEEECCTTCH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC----CceEEEEccCCCH
Confidence            57788888855 4554    4455579999999999887766665553 334    2588899998653

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.65  E-value=0.34  Score=38.52  Aligned_cols=101  Identities=16%  Similarity=0.146  Sum_probs=60.9

Q ss_pred             ccCCCEEEEEc--CCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898        160 VREGDLVLDVF--AGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR  236 (324)
Q Consensus       160 ~~~g~~VLDl~--~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  236 (324)
                      .++|++||=-|  .|+|.+++.+|+ .|++|++.-.+++-.+.+++    .+  .+   .+++-+  +...+...     
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~----lG--a~---~vi~~~--~~~~~~~~-----   92 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LG--AK---EVLARE--DVMAERIR-----   92 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TT--CS---EEEECC---------------
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHh----cc--cc---eeeecc--hhHHHHHH-----
Confidence            55788898887  478899999998 68899999999888877753    34  33   222222  11111110     


Q ss_pred             hcccCCCCCCCCcccEEEECChhhhHHHHHHHhccchhhcCCCCCCCEEEEEEcccC
Q psy16898        237 WSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPK  293 (324)
Q Consensus       237 ~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~  293 (324)
                             ...+..+|+|+-+.-.  ..+-.++..++++        |.+.++.+...
T Consensus        93 -------~~~~~gvD~vid~vgg--~~~~~~l~~l~~~--------Griv~~G~~~g  132 (176)
T d1xa0a2          93 -------PLDKQRWAAAVDPVGG--RTLATVLSRMRYG--------GAVAVSGLTGG  132 (176)
T ss_dssp             --------CCSCCEEEEEECSTT--TTHHHHHHTEEEE--------EEEEECSCCSS
T ss_pred             -------HhhccCcCEEEEcCCc--hhHHHHHHHhCCC--------ceEEEeecccC
Confidence                   0113469977665443  2344445557765        77777766544

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=84.60  E-value=2.2  Score=35.09  Aligned_cols=58  Identities=22%  Similarity=0.161  Sum_probs=37.9

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=-|++.|   .++..+++.|++|+.+|.++..  .++.-++..+    .++.++.+|+.+.
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~--~~~~~~~~~g----~~~~~~~~Dvs~~   64 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLG----RRVLTVKCDVSQP   64 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH--HHHHHHHHTT----CCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH--HHHHHHHHcC----CcEEEEEeeCCCH
Confidence            5778887776554   3344555679999999988642  2333344334    3688999998653

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.16  E-value=0.88  Score=36.41  Aligned_cols=43  Identities=23%  Similarity=0.104  Sum_probs=33.1

Q ss_pred             CEEEEEcCCCc--hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH
Q psy16898        164 DLVLDVFAGVG--PFSIPAARRGAIVAANDLNPDSYAWLQASIRL  206 (324)
Q Consensus       164 ~~VLDl~~G~G--~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~  206 (324)
                      ++|.=+|+|+=  .++..+|..|..|+.+|.++++++.+++.++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~   49 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEE   49 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHH
Confidence            36777888753  33455666899999999999999988887664

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=83.73  E-value=0.91  Score=32.16  Aligned_cols=32  Identities=13%  Similarity=0.132  Sum_probs=21.2

Q ss_pred             CCEEEEEc-CCCc--hhHHHHHhcCCEEEEEeCCH
Q psy16898        163 GDLVLDVF-AGVG--PFSIPAARRGAIVAANDLNP  194 (324)
Q Consensus       163 g~~VLDl~-~G~G--~~al~~a~~g~~V~avD~~~  194 (324)
                      .+++.=+| ||+|  ++|..+.++|..|.|.|...
T Consensus         8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            34554443 3344  55666677899999999864

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.16  E-value=3.7  Score=33.57  Aligned_cols=54  Identities=20%  Similarity=0.143  Sum_probs=38.0

Q ss_pred             CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=-|++.| ++..+|    +.|++|+.+|.+++.++.+.+     .  +  +..++.+|+.+.
T Consensus         4 ~gK~~lITGas~G-IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~-----~--~--~~~~~~~Dv~~~   61 (242)
T d1ulsa_           4 KDKAVLITGAAHG-IGRATLELFAKEGARLVACDIEEGPLREAAE-----A--V--GAHPVVMDVADP   61 (242)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-----T--T--TCEEEECCTTCH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----H--c--CCeEEEEecCCH
Confidence            5778888887655 555444    579999999999987766543     2  3  256778887553

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=82.22  E-value=5  Score=32.68  Aligned_cols=56  Identities=25%  Similarity=0.153  Sum_probs=39.2

Q ss_pred             CCCEEEEEcCCCchhHHH----HHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIP----AARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~----~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=.|++ ++++..    +++.|++|+..+.|.+.++.+.+     .  +.+++.++.+|+.+.
T Consensus         4 ~gK~alItGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~-----~--~~~~~~~~~~Dls~~   63 (241)
T d2a4ka1           4 SGKTILVTGAA-SGIGRAALDLFAREGASLVAVDREERLLAEAVA-----A--LEAEAIAVVADVSDP   63 (241)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-----T--CCSSEEEEECCTTSH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----H--cCCceEEEEecCCCH
Confidence            57788877776 445544    44579999999999987654432     2  334688899998653

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.22  E-value=2.1  Score=34.10  Aligned_cols=29  Identities=21%  Similarity=0.295  Sum_probs=20.9

Q ss_pred             CCchhHH----HHHhcCCEEEEEeCCHHHHHHH
Q psy16898        172 GVGPFSI----PAARRGAIVAANDLNPDSYAWL  200 (324)
Q Consensus       172 G~G~~al----~~a~~g~~V~avD~~~~a~~~a  200 (324)
                      |.|.+|+    .+|++|.+|+|+|.|++-++.+
T Consensus         7 GlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~l   39 (202)
T d1mv8a2           7 GLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLI   39 (202)
T ss_dssp             CCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHh
Confidence            4455544    4455789999999999877654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.06  E-value=2.3  Score=34.98  Aligned_cols=56  Identities=23%  Similarity=0.124  Sum_probs=38.8

Q ss_pred             CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=-|++.|   .++..+++.|++|+.+|.+++.++.+.+.       +. ++..+..|+.+.
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------~~-~~~~~~~Dv~~~   62 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE-------CP-GIEPVCVDLGDW   62 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------ST-TCEEEECCTTCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-------cC-CCeEEEEeCCCH
Confidence            5788887776655   23444555799999999998876655432       22 467788888764

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=82.02  E-value=0.38  Score=32.96  Aligned_cols=43  Identities=19%  Similarity=0.183  Sum_probs=34.8

Q ss_pred             ccCCCEEEEEcC--CCchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898        160 VREGDLVLDVFA--GVGPFSIPAAR-RGAIVAANDLNPDSYAWLQA  202 (324)
Q Consensus       160 ~~~g~~VLDl~~--G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~  202 (324)
                      .+++++||=.++  |+|.+++.+++ .|++|+++--|++-.+++++
T Consensus        29 ~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~   74 (77)
T d1o8ca2          29 RPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKS   74 (77)
T ss_dssp             CGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH
T ss_pred             ccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHH
Confidence            457888887664  67888888887 58899999999988888765

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=81.97  E-value=3.6  Score=34.30  Aligned_cols=56  Identities=21%  Similarity=0.195  Sum_probs=39.5

Q ss_pred             CCCEEEEEcCCCchhHHHH----HhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898        162 EGDLVLDVFAGVGPFSIPA----ARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF  225 (324)
Q Consensus       162 ~g~~VLDl~~G~G~~al~~----a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~  225 (324)
                      +|+++|=-|++. +++..+    ++.|++|+.+|.+++.++.+.+..   +    .++..+.+|+.+.
T Consensus         4 ~gK~alITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~---~----~~~~~~~~Dv~~~   63 (276)
T d1bdba_           4 KGEAVLITGGAS-GLGRALVDRFVAEGAKVAVLDKSAERLAELETDH---G----DNVLGIVGDVRSL   63 (276)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G----GGEEEEECCTTCH
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C----CCeeEEecccccH
Confidence            578888888654 455544    457999999999998877655432   2    2578888887553