Psyllid ID: psy16921

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDDP
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEEccccccccccccccccccccccHHHHHHHHHHHHcccEEEcccHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEcccccccHHHHHHHHHHHHHHEEEccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEccccccEEEEEccccccc
Coil and Loop (DISEMBL)
MDSVNIIIVDFFIFWNHLGICCVYINFIAdnfdqachhfspdtslAKIHWELIITVVMIVLNQVknlhflspfsSIESLINQrskagtkvhsfsnlikgvgspsfnseSLIKRFRLLKCNILLTIGLGMVCYYIFRdgldqpilrpgdveLFGKLYEVPLFMGTFLFASLGIGVLIALedemktpssyrknpfgifnMGFTTIIIIYLFVGVIGYYKygqlvegsitlnipkddp
Flexible Loop (DISEMBL)
MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLINQRSKAGTKVHSFSNLIkgvgspsfnSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQlvegsitlnipkddp
Low Complexity Region (SEG)
MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDDP
Disordered region (IsUnstruct)
***VNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLN******
Disordered Region (DISOPRED)
***VNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIP****
Disordered Region (DISEMBL)
MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESL**********VHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDDP
Disordered Region (DISPRO)
MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIP****
Transmembrane Helix (TMHMM)
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDDP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	235	2.2.26 [Sep-21-2011]
Q7Z2H8	476	Proton-coupled amino acid	yes	N/A	0.795	0.392	0.302	2e-16
Q924A5	475	Proton-coupled amino acid	yes	N/A	0.795	0.393	0.328	5e-15
Q8K4D3	475	Proton-coupled amino acid	yes	N/A	0.740	0.366	0.285	2e-14
Q8BHK3	478	Proton-coupled amino acid	no	N/A	0.791	0.389	0.267	3e-13
Q4KL91	522	Proton-coupled amino acid	N/A	N/A	0.770	0.346	0.279	1e-12
Q495M3	483	Proton-coupled amino acid	no	N/A	0.791	0.385	0.267	1e-12
Q8CH36	500	Proton-coupled amino acid	no	N/A	0.727	0.342	0.235	1e-11
Q8K415	481	Proton-coupled amino acid	no	N/A	0.787	0.384	0.273	3e-11
Q6YBV0	504	Proton-coupled amino acid	no	N/A	0.727	0.339	0.231	1e-10
Q811P0	477	Proton-coupled amino acid	no	N/A	0.731	0.360	0.244	4e-09

>sp|Q7Z2H8|S36A1_HUMAN Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 104/225 (46%), Gaps = 38/225 (16%)

Query: 8   IVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNL 67
           +VDFF+    LG CCVY  F+ADNF Q     +  T+    +  +I+T  M        L
Sbjct: 142 VVDFFLIVTQLGFCCVYFVFLADNFKQVIEAANGTTNNCHNNETVILTPTM-----DSRL 196

Query: 68  HFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGL 127
           + LS    +  L+  R+     + S                        L  NI + + L
Sbjct: 197 YMLSFLPFLVLLVFIRNLRALSIFS------------------------LLANITMLVSL 232

Query: 128 GMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSS 187
            M+  +I      Q I  P  + L       PLF GT +F+  GIG+++ LE++MK P  
Sbjct: 233 VMIYQFIV-----QRIPDPSHLPLVAPWKTYPLFFGTAIFSFEGIGMVLPLENKMKDP-- 285

Query: 188 YRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPK 232
            RK P  I  +G   + I+Y+ +G +GY ++G  ++GSITLN+P 
Sbjct: 286 -RKFPL-ILYLGMVIVTILYISLGCLGYLQFGANIQGSITLNLPN 328

Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid.
Homo sapiens (taxid: 9606)

>sp|Q924A5|S36A1_RAT Proton-coupled amino acid transporter 1 OS=Rattus norvegicus GN=Slc36a1 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 109/225 (48%), Gaps = 38/225 (16%)

Query: 8   IVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNL 67
           IVDFF+    LG CCVY  F+ADNF Q     +  T+    +  +I+T  M   +++  L
Sbjct: 141 IVDFFLVVTQLGFCCVYFVFLADNFKQVIEAANGTTTNCNNNETVILTPTMD--SRLYML 198

Query: 68  HFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGL 127
            FL PF  + S I              NL             ++  F LL  NI + + L
Sbjct: 199 TFL-PFLVLLSFIR-------------NL------------RILSIFSLLA-NISMFVSL 231

Query: 128 GMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSS 187
            M+  +I      Q I  P  + L       PLF GT +FA  GIGV++ LE++MK    
Sbjct: 232 IMIYQFIV-----QRIPDPSHLPLVAPWKTYPLFFGTAIFAFEGIGVVLPLENKMK---D 283

Query: 188 YRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPK 232
            +K P  I  +G   I ++Y+ +G +GY ++G  ++GSITLN+P 
Sbjct: 284 SQKFPL-ILYLGMAIITVLYISLGSLGYLQFGADIKGSITLNLPN 327

Neutral amino acid/proton symporter. Probably involved in the efflux of lysosomal proteolysis products such as L-proline, L-alanine and glycine from the cell. May play a role in specifying sites for exocytosis in neurons.

Rattus norvegicus (taxid: 10116)

>sp|Q8K4D3|S36A1_MOUSE Proton-coupled amino acid transporter 1 OS=Mus musculus GN=Slc36a1 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 102/238 (42%), Gaps = 64/238 (26%)

Query: 8   IVDFFIFWNHLGICCVYINFIADNFDQACHHFS-------------PDTSLAKIHWELII 54
           IVDFF+    LG CCVY  F+ADNF Q     +             P  ++    + L  
Sbjct: 141 IVDFFLIVTQLGFCCVYFVFLADNFKQVIEAANGTTTNCNNNVTVIPTPTMDSRLYMLSF 200

Query: 55  TVVMIVLNQVKNLHFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRF 114
              +++L+ ++NL  LS FS                                        
Sbjct: 201 LPFLVLLSFIRNLRVLSIFS---------------------------------------- 220

Query: 115 RLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGV 174
             L  NI + + L M+  +I      Q I  P  + L       PLF GT +FA  GIGV
Sbjct: 221 --LLANISMFVSLIMIYQFIV-----QRIPDPSHLPLVAPWKTYPLFFGTAIFAFEGIGV 273

Query: 175 LIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPK 232
           ++ LE++MK     +K P  I  +G   I ++Y+ +G +GY ++G  ++GSITLN+P 
Sbjct: 274 VLPLENKMK---DSQKFPL-ILYLGMAIITVLYISLGSLGYLQFGANIKGSITLNLPN 327

Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid.

Mus musculus (taxid: 10090)

>sp|Q8BHK3|S36A2_MOUSE Proton-coupled amino acid transporter 2 OS=Mus musculus GN=Slc36a2 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 38/224 (16%)

Query: 8   IVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNL 67
           +V FF+    LG CCVYI F+ADN  Q     +  T     +  +++T  M   +++  L
Sbjct: 144 VVSFFLIVTQLGFCCVYIVFLADNLKQVVEAVNSTTISCHKNETVVLTPTMD--SRLYML 201

Query: 68  HFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGL 127
            FL     +  + N R                          ++  F LL  NI + + L
Sbjct: 202 SFLPVLGLLVFVRNLR--------------------------VLTIFSLLA-NISMLVSL 234

Query: 128 GMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSS 187
            ++  YI ++  D        + L       PLF GT +F+   IGV++ LE++MK    
Sbjct: 235 VIIAQYIIQEIPDA-----SQLPLVASWKTYPLFFGTAIFSFESIGVVLPLENKMKDARG 289

Query: 188 YRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIP 231
           +      I ++G + I  +Y+ +G +GY ++G  ++ SITLN+P
Sbjct: 290 FPT----ILSLGMSIITTLYIAIGALGYLRFGDDIKASITLNLP 329

Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids amino acids such as glycine, alanine and proline. Inhibited by sarcosine.

Mus musculus (taxid: 10090)

>sp|Q4KL91|S36A4_XENLA Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 99/229 (43%), Gaps = 48/229 (20%)

Query: 8   IVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIH---WELIITVVMIVLNQV 64
           +VD+F+    LG C VY  F+A+N  Q    F  +T L +     W L + + M      
Sbjct: 181 LVDWFLVVTQLGFCSVYFVFLAENIKQVFEVFL-ETKLQQSEIGIWSLDLRIYMFSF--- 236

Query: 65  KNLHFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLT 124
             L  + P   I  L N                           SL+  F     N+ + 
Sbjct: 237 --LPLIIPLVFIRDLKNL--------------------------SLLSFF----ANVSMA 264

Query: 125 IGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKT 184
           I L +V  Y+ R+  D     P  + L       PLF GT +FA  GIGV++ LE+ M+ 
Sbjct: 265 ISLLIVYQYVIRNLSD-----PRTLPLGTSWKTYPLFFGTAIFAFEGIGVVLPLENRMRD 319

Query: 185 PSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKD 233
              + K      N+G   +  +Y+ +  +GY+ +G  ++GSITLN+P+D
Sbjct: 320 KKDFSKA----LNIGMAIVTTLYISLATLGYFCFGDQIKGSITLNLPQD 364

Xenopus laevis (taxid: 8355)

>sp|Q495M3|S36A2_HUMAN Proton-coupled amino acid transporter 2 OS=Homo sapiens GN=SLC36A2 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 38/224 (16%)

Query: 8   IVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNL 67
           IV FF+    LG CCVYI F+ADN  Q     +  T+    +  +I+T  M         
Sbjct: 149 IVSFFLIITQLGFCCVYIVFLADNLKQVVEAVNSTTNNCYSNETVILTPTM--------- 199

Query: 68  HFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGL 127
                               ++++  S L   V      +  ++  F +L  NI + + L
Sbjct: 200 -------------------DSRLYMLSFLPFLVLLVLIRNLRILTIFSMLA-NISMLVSL 239

Query: 128 GMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSS 187
            ++  YI      Q I  P  + L       PLF GT +F+   IGV++ LE++MK   +
Sbjct: 240 VIIIQYI-----TQEIPDPSRLPLVASWKTYPLFFGTAIFSFESIGVVLPLENKMK---N 291

Query: 188 YRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIP 231
            R  P  I ++G + +  +Y+ +  +GY ++G  ++ SI+LN+P
Sbjct: 292 ARHFP-AILSLGMSIVTSLYIGMAALGYLRFGDDIKASISLNLP 334

Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids. Transports glycine and proline. Inhibited by sarcosine.

Homo sapiens (taxid: 9606)

>sp|Q8CH36|S36A4_MOUSE Proton-coupled amino acid transporter 4 OS=Mus musculus GN=Slc36a4 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 102/246 (41%), Gaps = 75/246 (30%)

Query: 8   IVDFFIFWNHLGICCVYINFIADNFDQ--------------------ACHHFSPDTSLAK 47
           +VDFF+    LG C VYI F+A+N  Q                    AC   S D  +  
Sbjct: 151 VVDFFLVITQLGFCSVYIVFLAENVKQVHEGFLGSTPIVSNGSDLSHACERRSVDLRVYM 210

Query: 48  IHWELIITVVMIVLNQVKNLHFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNS 107
           + + L + ++++ + ++KNL  LS                                    
Sbjct: 211 LCF-LPLIILLVFIRELKNLFVLS------------------------------------ 233

Query: 108 ESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLF 167
                       NI +   L ++  Y+ R+  D     P ++ +     + PLF GT +F
Sbjct: 234 ---------FLANISMAASLVIIYQYVVRNMPD-----PHNLPIVAGWKKYPLFFGTAVF 279

Query: 168 ASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSIT 227
           A  GIGV++ LE++M+    + +      N+G   + ++Y+ +  +GY  +   ++GSIT
Sbjct: 280 AFEGIGVVLPLENQMRESKRFPQA----LNIGMAIVTVLYISLATLGYMCFRDEIKGSIT 335

Query: 228 LNIPKD 233
           LN+P+D
Sbjct: 336 LNLPQD 341

Functions as a sodium-independent electroneutral transporter for tryptophan, proline and alanine.

Mus musculus (taxid: 10090)

>sp|Q8K415|S36A2_RAT Proton-coupled amino acid transporter 2 OS=Rattus norvegicus GN=Slc36a2 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 100/223 (44%), Gaps = 38/223 (17%)

Query: 9   VDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLH 68
           V FF+    LG CCVYI F+ADN  Q     +  T     H    + +   + +++  L 
Sbjct: 148 VSFFLIVTQLGFCCVYIVFLADNLKQVVEAVNSTT--ISCHKNETVVLTPTIDSRLYMLA 205

Query: 69  FLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLG 128
           FL     +  + N R                          ++  F LL  N+ + + L 
Sbjct: 206 FLPVLGLLVFIRNLR--------------------------VLTIFSLLA-NVSMLVSLV 238

Query: 129 MVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSY 188
           ++  YI +   D     P  + L       PLF GT +F+   IGV++ LE++MK     
Sbjct: 239 IIGQYIIQGIPD-----PSQLPLVASWKTYPLFFGTAIFSFESIGVVLPLENKMK---DA 290

Query: 189 RKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIP 231
           R+ P  I ++G + I  +Y+ +G +GY ++G  ++ SITLN+P
Sbjct: 291 RRFP-TILSLGMSIITTLYIAIGALGYLRFGDDIKASITLNLP 332

Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids amino acids such as glycine, alanine and proline. Inhibited by sarcosine. Inhibited by L-pipecolic acid, D-pipecolic acid and isonipecotic acid.

Rattus norvegicus (taxid: 10116)

>sp|Q6YBV0|S36A4_HUMAN Proton-coupled amino acid transporter 4 OS=Homo sapiens GN=SLC36A4 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 100/246 (40%), Gaps = 75/246 (30%)

Query: 8   IVDFFIFWNHLGICCVYINFIADNFDQA--------------------CHHFSPDTSLAK 47
           +VDFF+    LG C VYI F+A+N  Q                     C   S D  +  
Sbjct: 154 VVDFFLVITQLGFCSVYIVFLAENVKQVHEGFLESKVFISNSTNSSNPCERRSVDLRIYM 213

Query: 48  IHWELIITVVMIVLNQVKNLHFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNS 107
           + + L   ++++ + ++KNL  LS                                    
Sbjct: 214 LCF-LPFIILLVFIRELKNLFVLS------------------------------------ 236

Query: 108 ESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLF 167
                       N+ + + L ++  Y+ R+  D     P ++ +     + PLF GT +F
Sbjct: 237 ---------FLANVSMAVSLVIIYQYVVRNMPD-----PHNLPIVAGWKKYPLFFGTAVF 282

Query: 168 ASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSIT 227
           A  GIGV++ LE++MK    + +      N+G   +  +Y+ +  +GY  +   ++GSIT
Sbjct: 283 AFEGIGVVLPLENQMKESKRFPQA----LNIGMGIVTTLYVTLATLGYMCFHDEIKGSIT 338

Query: 228 LNIPKD 233
           LN+P+D
Sbjct: 339 LNLPQD 344

Functions as a sodium-independent electroneutral transporter for tryptophan, proline and alanine. Inhibited by sarcosine.

Homo sapiens (taxid: 9606)

>sp|Q811P0|S36A3_MOUSE Proton-coupled amino acid transporter 3 OS=Mus musculus GN=Slc36a3 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 98/237 (41%), Gaps = 65/237 (27%)

Query: 8   IVDFFIFWNHLGICCVYINFIADNFDQACH--HFS-----PDTSLAKIH------WELII 54
           +V F +    LG C VY  F+ADN  Q     HF+     P  SL          + L I
Sbjct: 145 VVSFLLIVTQLGFCSVYFMFLADNLQQIMEEAHFTSNVCQPRQSLVMTSILDTRFYMLTI 204

Query: 55  TVVMIVLNQVKNLHFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRF 114
              +I+L  ++N   LS FS++ ++    S A      F  LI+   +P  ++  L+  +
Sbjct: 205 LPFLILLVLIQNPQVLSIFSTLATITTLSSLALI----FEYLIQ---TPHHSNLPLVANW 257

Query: 115 RLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGV 174
           +                                            LF GT +F   G+G+
Sbjct: 258 KTFL-----------------------------------------LFFGTAIFTFEGVGM 276

Query: 175 LIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIP 231
           ++ L+ +MK+P  +      +  +G + +I +Y+ +G +GY K+G   + SITLN+P
Sbjct: 277 VLPLKSQMKSPQQFP----AVLYLGMSFVIFLYICLGTLGYMKFGTDTQASITLNLP 329

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
345495708	471	PREDICTED: proton-coupled amino acid tra	0.753	0.375	0.352	7e-27
242022478	505	proton-coupled amino acid transporter, p	0.740	0.344	0.340	2e-25
194746970	453	GF24851 [Drosophila ananassae] gi|190623	0.778	0.403	0.327	8e-24
307204534	404	Proton-coupled amino acid transporter 1	0.774	0.450	0.330	2e-23
242022480	513	proton-coupled amino acid transporter, p	0.748	0.343	0.317	2e-23
194868734	616	GG13950 [Drosophila erecta] gi|190654109	0.757	0.288	0.330	4e-23
195439852	464	GK12532 [Drosophila willistoni] gi|19416	0.748	0.379	0.331	4e-23
195493285	599	GE20249 [Drosophila yakuba] gi|194180451	0.757	0.297	0.330	5e-23
321478763	393	hypothetical protein DAPPUDRAFT_94786 [D	0.761	0.455	0.317	1e-22
195377335	474	GJ11930 [Drosophila virilis] gi|19415460	0.748	0.371	0.318	1e-22

>gi|345495708|ref|XP_003427558.1| PREDICTED: proton-coupled amino acid transporter 1-like [Nasonia vitripennis]

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 114/227 (50%), Gaps = 50/227 (22%)

Query: 7   IIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKN 66
           IIVD F+    LGICCVYI F+A N  Q    +     + K+H  LI+ + + V+N ++N
Sbjct: 150 IIVDAFLIVYQLGICCVYIVFVATNIKQVADQYCEPIDV-KLHM-LILLIPLTVINYIRN 207

Query: 67  LHFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIG 126
           L  L+PFSS+                                           NI+  +G
Sbjct: 208 LKLLAPFSSVA------------------------------------------NIITFVG 225

Query: 127 LGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPS 186
           LGM+  Y+F D     +    + E+FG +    L+ GT LFA   +GV+IALE+ MKTP 
Sbjct: 226 LGMILAYVFDD-----LPSITEREMFGSVRNFSLYFGTTLFALEAVGVIIALENNMKTPQ 280

Query: 187 SYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKD 233
           ++R   FG+ N+G   I+++Y+ VG  GY KYG    GSITLN+P D
Sbjct: 281 NFRGT-FGVLNVGMLVIVVLYILVGFFGYIKYGPDASGSITLNLPMD 326

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022478|ref|XP_002431667.1| proton-coupled amino acid transporter, putative [Pediculus humanus corporis] gi|212516975|gb|EEB18929.1| proton-coupled amino acid transporter, putative [Pediculus humanus corporis]

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 118/232 (50%), Gaps = 58/232 (25%)

Query: 8   IVDFFIFWNHLGICCVYINFIADNFDQAC--HHFSPDTSLAKIHWELIITVVMIVLNQVK 65
           +V+FFI    LGICCVY+ F+A N       + +  D  +    + +I  + +I++N V+
Sbjct: 185 VVNFFILAYQLGICCVYVVFVASNVKDVVDVYWYKMDVRI----YMVIFLLPLILINYVR 240

Query: 66  NLHFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTI 125
           NL +L+PFS++                                           NI+  I
Sbjct: 241 NLKYLAPFSAVS------------------------------------------NIITFI 258

Query: 126 GLGMVCYYIFRD--GLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMK 183
           G G+  YYIF +  GLD+        E  G++   PLF GT LF+   IGV++ LE+EMK
Sbjct: 259 GFGITLYYIFSELHGLDER-------EAIGEVQNWPLFFGTVLFSLEAIGVIMPLENEMK 311

Query: 184 TPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDDP 235
           +P S+ K PFG+ N+    II++Y+ +G  GY +YG+   GSITLNIP +DP
Sbjct: 312 SPKSFGK-PFGVLNVAMGLIIVLYVGMGFFGYLRYGENALGSITLNIPSEDP 362

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194746970|ref|XP_001955927.1| GF24851 [Drosophila ananassae] gi|190623209|gb|EDV38733.1| GF24851 [Drosophila ananassae]

 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 118/235 (50%), Gaps = 52/235 (22%)

Query: 1   MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIV 60
           +  V I  VD F+ + H GICCVY+ FIA++  Q    +     + +IH  +II V +++
Sbjct: 131 LAPVAIPFVDGFLAFYHFGICCVYVVFIAESIKQLVDEYLVVWDV-RIHMCIII-VPLLL 188

Query: 61  LNQVKNLHFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCN 120
           +  +KNL  L+PFSS                                            N
Sbjct: 189 IYSIKNLKLLAPFSS------------------------------------------AAN 206

Query: 121 ILLTIGLGMVCYYIFRDGLDQPILRP-GDVELFGKLYEVPLFMGTFLFASLGIGVLIALE 179
           +LL +G G++ YYIF D      L P  +   F    E+P F GT LFA   +GV++A+E
Sbjct: 207 LLLLVGFGIILYYIFED------LPPLSERNAFVAFTELPTFFGTVLFALEAVGVILAIE 260

Query: 180 DEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDD 234
           + M TP ++ + P GI N G + ++ +Y+ +G  GY+KYG+  +GSITLNIP+ +
Sbjct: 261 ENMATPRAFVR-PCGIMNAGMSIVLSLYILLGFFGYWKYGEEAKGSITLNIPQSE 314

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204534|gb|EFN83214.1| Proton-coupled amino acid transporter 1 [Harpegnathos saltator]

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 118/233 (50%), Gaps = 51/233 (21%)

Query: 2   DSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVL 61
              +I I++ F+    +G CCVY+ FIA N   A   +  D  L K++   II + +I++
Sbjct: 83  SRASIHIINAFLMIYQMGTCCVYVVFIASNLHLALKTWI-DLDL-KVYMA-IILLPLILV 139

Query: 62  NQVKNLHFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNI 121
           N ++NL FL+PFS++                                           NI
Sbjct: 140 NYIRNLKFLAPFSTLA------------------------------------------NI 157

Query: 122 LLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDE 181
           L+  G  ++ YYIFR+    P+   G   + G +   PLF GT LFA   IGV++ LE+E
Sbjct: 158 LMFTGFAIILYYIFRE----PLTFEGRASV-GAIENFPLFFGTVLFALESIGVIMPLENE 212

Query: 182 MKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDD 234
           MKTP S+ + PFG+ N+    II++Y  +G  GY +YG L++GSITL++P  +
Sbjct: 213 MKTPKSFMR-PFGVLNIAMIIIIVLYAGMGFFGYVRYGSLIKGSITLSLPTQE 264

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022480|ref|XP_002431668.1| proton-coupled amino acid transporter, putative [Pediculus humanus corporis] gi|212516976|gb|EEB18930.1| proton-coupled amino acid transporter, putative [Pediculus humanus corporis]

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 115/227 (50%), Gaps = 51/227 (22%)

Query: 9   VDFFIFWNHLGICCVYINFIADNFDQAC-HHFSPDTSLAKIHWELIITVVMIVLNQVKNL 67
           +D F+F +  G CCVY+ F+A N  Q   HH   D  + +++  +++ + +I+ N + NL
Sbjct: 198 IDTFLFIDLYGCCCVYVVFVARNLKQVVDHHLEIDYDV-RLYMAMLL-IPLILTNLIHNL 255

Query: 68  HFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGL 127
            +L+PFS I                                           NIL+ +G+
Sbjct: 256 KWLAPFSMI------------------------------------------ANILMAVGI 273

Query: 128 GMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSS 187
           G+  YY+F D     +    + + F    ++PLF GT +FA  GIGV++ LE+ MKTP  
Sbjct: 274 GISFYYVFND-----LPHVTERKYFSSFQQLPLFFGTAIFALEGIGVVMPLENNMKTPQK 328

Query: 188 YRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDD 234
           +   P G+ N+G T ++I+Y  VG  GY K+G+  + SITLN+PKD+
Sbjct: 329 FIGCP-GVLNIGMTVVVILYTAVGFFGYLKFGEDTQASITLNLPKDE 374

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194868734|ref|XP_001972326.1| GG13950 [Drosophila erecta] gi|190654109|gb|EDV51352.1| GG13950 [Drosophila erecta]

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 114/227 (50%), Gaps = 49/227 (21%)

Query: 8   IVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNL 67
           +V+ F+  + LG CC+Y+ F+A N +Q    +   T L+   W +I+T  +I++  V+NL
Sbjct: 298 MVNTFLVIDLLGCCCIYLVFVATNVEQVVSVYM-GTKLSIRVWIMIVTAPLILMCLVRNL 356

Query: 68  HFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGL 127
            FL+PFS I                                           NIL+ +G+
Sbjct: 357 KFLTPFSMI------------------------------------------ANILMFVGI 374

Query: 128 GMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSS 187
            +   Y+F D +  P+ RPG V +     E PLF GT +FA  GIGV+++LE++MK P+ 
Sbjct: 375 VITFIYMFSD-IPAPVERPGIVSV----SEWPLFFGTVIFALEGIGVVMSLENDMKNPTH 429

Query: 188 YRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDD 234
           +   P  + N G   +I +Y  VG  G+ KYG   E SITLN+PK+D
Sbjct: 430 FIGCP-SVLNFGMGLVIALYTLVGFFGFLKYGTATEASITLNLPKED 475

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195439852|ref|XP_002067773.1| GK12532 [Drosophila willistoni] gi|194163858|gb|EDW78759.1| GK12532 [Drosophila willistoni]

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 114/226 (50%), Gaps = 50/226 (22%)

Query: 9   VDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLH 68
           VD F+ + H GICCVY+ FIA++  Q    +     + ++H  LII V ++++  ++NL 
Sbjct: 144 VDGFLAFYHFGICCVYVVFIAESIKQLVDEYLVVWDV-RLHMCLII-VPLLLIYSIRNLK 201

Query: 69  FLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLG 128
            L+PFS+                                            N+LL +G G
Sbjct: 202 LLAPFST------------------------------------------AANLLLFVGFG 219

Query: 129 MVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSY 188
           ++ YYIF D    P L   D   F  + E+P F GT LFA   +GV++A+E+ M  P  Y
Sbjct: 220 IILYYIFED---LPPLSTRDA--FVSVTELPTFFGTVLFALEAVGVILAIEENMANPKDY 274

Query: 189 RKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDD 234
            + PFGI NMG + ++ +Y+ +G  GY+KYG    GS+TLNIP+ +
Sbjct: 275 VR-PFGIMNMGMSIVLGLYILLGFSGYWKYGSESLGSVTLNIPQSE 319

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195493285|ref|XP_002094350.1| GE20249 [Drosophila yakuba] gi|194180451|gb|EDW94062.1| GE20249 [Drosophila yakuba]

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 115/227 (50%), Gaps = 49/227 (21%)

Query: 8   IVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNL 67
           +V+ F+  + LG CC+Y+ F+A N +Q    +  +T L+   W +I+T  +I++  V+NL
Sbjct: 281 MVNTFLVIDLLGCCCIYLVFVATNVEQVVRVYM-ETELSIRVWIMIVTAPLILMCLVRNL 339

Query: 68  HFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGL 127
            FL+PFS I                                           NIL+ +G+
Sbjct: 340 KFLTPFSMI------------------------------------------ANILMFVGI 357

Query: 128 GMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSS 187
            +   Y+F D +  P+ RPG V +     E PLF GT +FA  GIGV+++LE++MK PS 
Sbjct: 358 VITFIYMFSD-IPAPVERPGIVSV----SEWPLFFGTVIFALEGIGVVMSLENDMKNPSH 412

Query: 188 YRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDD 234
           +   P  + N+G   +I +Y  VG  G+ KYG   E SITLN+P +D
Sbjct: 413 FIGCP-SVLNLGMGLVIALYTLVGFFGFLKYGPETEASITLNLPLED 458

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321478763|gb|EFX89720.1| hypothetical protein DAPPUDRAFT_94786 [Daphnia pulex]

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 48/227 (21%)

Query: 8   IVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNL 67
           +++ F+     G CCVYI F A NF+Q   H+ P  +L+   +  I+TV +I L  ++ L
Sbjct: 79  LINLFLCITQFGFCCVYIVFAATNFEQVVAHYVPTVTLSIRSYMAIMTVFLIPLCLIRKL 138

Query: 68  HFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGL 127
            +LSP S                                          L  NIL T  L
Sbjct: 139 KYLSPVS------------------------------------------LLANILQTSSL 156

Query: 128 GMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSS 187
            ++ YYI +D L     RP     FG    +PL+ GT +FA  GI +++ L+ +M+TP  
Sbjct: 157 VLIFYYILQD-LPNVSSRPA----FGSWKTLPLYFGTAVFAFEGISLVLPLQKDMRTPKQ 211

Query: 188 YRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDD 234
           + +   G+ N G  T+  +Y  VG  GY KYG++++GSITLN+P +D
Sbjct: 212 F-EGLTGVLNTGMVTVSALYFAVGFYGYLKYGEVIKGSITLNLPSED 257

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195377335|ref|XP_002047446.1| GJ11930 [Drosophila virilis] gi|194154604|gb|EDW69788.1| GJ11930 [Drosophila virilis]

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 116/226 (51%), Gaps = 50/226 (22%)

Query: 9   VDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLH 68
           VD F+ + H GICCVY+ FIA++  Q    +  +  + ++H  L+I  ++++ + ++NL 
Sbjct: 156 VDGFLAFYHFGICCVYVVFIAESIKQLVDEYLVEWDV-RLHMCLLIVPLLLIFS-IRNLK 213

Query: 69  FLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLG 128
            L+PFSS                                            N+LL +G G
Sbjct: 214 LLAPFSS------------------------------------------AANLLLFVGFG 231

Query: 129 MVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSY 188
           +V YYI    +D P +   D   F    ++P F GT LFA   +GV++A+E+ M TP +Y
Sbjct: 232 IVLYYIL---VDLPPISERDA--FVHYSKLPTFFGTVLFALEAVGVILAIEENMATPRAY 286

Query: 189 RKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDD 234
            + P GI N G + ++ +Y+F+G  GY+KYG   +GS+TLNIP+ +
Sbjct: 287 VQ-PCGIMNWGMSIVLSLYVFLGFFGYWKYGAEAKGSVTLNIPQTE 331

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
FB|FBgn0035300	451	CG1139 [Drosophila melanogaste	0.502	0.261	0.418	1e-30
FB|FBgn0032036	504	CG13384 [Drosophila melanogast	0.455	0.212	0.403	2.5e-24
FB|FBgn0030816	468	CG16700 [Drosophila melanogast	0.451	0.226	0.333	1.5e-22
FB|FBgn0033760	474	CG8785 [Drosophila melanogaste	0.468	0.232	0.344	2.5e-22
UNIPROTKB|E7EW39	388	SLC36A1 "Proton-coupled amino	0.459	0.278	0.372	2.1e-21
UNIPROTKB|E2RHF1	476	SLC36A1 "Uncharacterized prote	0.459	0.226	0.381	2.5e-21
UNIPROTKB|Q7Z2H8	476	SLC36A1 "Proton-coupled amino	0.459	0.226	0.372	5.3e-21
UNIPROTKB|F1NY02	390	SLC36A4 "Uncharacterized prote	0.468	0.282	0.363	1.6e-19
FB|FBgn0036116	465	CG7888 [Drosophila melanogaste	0.463	0.234	0.417	1.9e-19
FB|FBgn0036007	500	path "pathetic" [Drosophila me	0.459	0.216	0.330	3.1e-19

FB|FBgn0035300 CG1139 [Drosophila melanogaster (taxid:7227)]

 Score = 236 (88.1 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
 Identities = 54/129 (41%), Positives = 76/129 (58%)

Query:   111 IKRFRLLK-----CNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTF 165
             IK  +LL       N+LL +G G++ YYIF + L  P+         GKL   P F GT 
Sbjct:   191 IKNLKLLAPFSSAANLLLLVGFGIILYYIFEE-LP-PLSERDPFVAAGKL---PTFFGTV 245

Query:   166 LFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGS 225
             LFA   +GV++A+E+ M TP S+   P GI N G + ++ +Y+ +G  GY+KYG   EGS
Sbjct:   246 LFALEAVGVILAIEENMATPKSF-VGPCGILNSGMSIVLGLYVLLGFFGYWKYGNESEGS 304

Query:   226 ITLNIPKDD 234
             ITLNIP+ +
Sbjct:   305 ITLNIPQSE 313

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0040007 "growth" evidence=IMP

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0032036 CG13384 [Drosophila melanogaster (taxid:7227)]

 Score = 195 (73.7 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
 Identities = 46/114 (40%), Positives = 66/114 (57%)

Query:   122 LLTI-GLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALED 180
             LLT+ GL +   Y+  D  D   ++P  V  +  L   PL+ GT ++A  GIGV++ LE+
Sbjct:   258 LLTVAGLAITFSYMLVDLPDVHTVKP--VATWATL---PLYFGTAIYAFEGIGVVLPLEN 312

Query:   181 EMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDD 234
              M+TP  +     G+ N G   +  +Y  VG  GY KYG+ VEGSITLN+P+ D
Sbjct:   313 NMRTPEDFGGTT-GVLNTGMVIVACLYTAVGFFGYLKYGEHVEGSITLNLPQGD 365

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0030816 CG16700 [Drosophila melanogaster (taxid:7227)]

 Score = 189 (71.6 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
 Identities = 37/111 (33%), Positives = 67/111 (60%)

Query:   120 NILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALE 179
             N+ + +GL +  YY  +DGL +   R     L+    ++ LF GT +FA  GI +++ L+
Sbjct:   217 NVCMILGLAITLYYALKDGLPEVEERA----LWTNGSQLALFFGTAIFAFEGIALVMPLK 272

Query:   180 DEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNI 230
             + M+ P  + + P G+ N+G   + ++++F G +GY K+G+ V GS+TLN+
Sbjct:   273 NAMRKPHQFER-PLGVLNVGMFLVSVMFMFAGSVGYMKWGEQVGGSLTLNL 322

GO:0015495 "gamma-aminobutyric acid:hydrogen symporter activity" evidence=ISS

GO:0008021 "synaptic vesicle" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0033760 CG8785 [Drosophila melanogaster (taxid:7227)]

 Score = 207 (77.9 bits), Expect = 2.5e-22, Sum P(2) = 2.5e-22
 Identities = 40/116 (34%), Positives = 66/116 (56%)

Query:   117 LKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLI 176
             +  NI + +   +  YY+F    D+P++   D  L  K   +PLF  T +FA  GIGV++
Sbjct:   223 MMANIFIVVTFAITLYYMF----DEPLVY-SDKPLIAKAAHIPLFFATVIFAMEGIGVVM 277

Query:   177 ALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPK 232
              +E+ M+ P  +   P G+ N+   T++ +Y  +G  GY ++G  V GSITLN+P+
Sbjct:   278 PVENSMRKPQHFLGCP-GVLNIAMVTVVSLYAIIGFFGYVRFGDQVRGSITLNLPE 332

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

UNIPROTKB|E7EW39 SLC36A1 "Proton-coupled amino acid transporter 1" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
 Identities = 44/118 (37%), Positives = 67/118 (56%)

Query:   114 FRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIG 173
             F LL  NI + + L M+  +I      Q I  P  + L       PLF GT +F+  GIG
Sbjct:   220 FSLL-ANITMLVSLVMIYQFIV-----QRIPDPSHLPLVAPWKTYPLFFGTAIFSFEGIG 273

Query:   174 VLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIP 231
             +++ LE++MK P   RK P  I  +G   + I+Y+ +G +GY ++G  ++GSITLN+P
Sbjct:   274 MVLPLENKMKDP---RKFPL-ILYLGMVIVTILYISLGCLGYLQFGANIQGSITLNLP 327

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RHF1 SLC36A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 179 (68.1 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
 Identities = 45/118 (38%), Positives = 66/118 (55%)

Query:   114 FRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIG 173
             F LL  NI + + L M+  +I      Q I  P  + L       PLF GT +FA  GIG
Sbjct:   220 FSLL-ANITMLVSLVMLYQFIV-----QNIPDPSHLPLVASWKTYPLFFGTAIFAFEGIG 273

Query:   174 VLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIP 231
             +++ LE++MK P  +   P  I  MG T I  +Y+ +G +GY ++G  ++GSITLN+P
Sbjct:   274 MVLPLENKMKDPQKF---PL-ILYMGMTIITALYISLGCLGYLQFGANIQGSITLNLP 327

GO:0015992 "proton transport" evidence=IEA

GO:0015193 "L-proline transmembrane transporter activity" evidence=IEA

GO:0015187 "glycine transmembrane transporter activity" evidence=IEA

GO:0015180 "L-alanine transmembrane transporter activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q7Z2H8 SLC36A1 "Proton-coupled amino acid transporter 1" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 5.3e-21, Sum P(2) = 5.3e-21
 Identities = 44/118 (37%), Positives = 67/118 (56%)

Query:   114 FRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIG 173
             F LL  NI + + L M+  +I      Q I  P  + L       PLF GT +F+  GIG
Sbjct:   220 FSLL-ANITMLVSLVMIYQFIV-----QRIPDPSHLPLVAPWKTYPLFFGTAIFSFEGIG 273

Query:   174 VLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIP 231
             +++ LE++MK P   RK P  I  +G   + I+Y+ +G +GY ++G  ++GSITLN+P
Sbjct:   274 MVLPLENKMKDP---RKFPL-ILYLGMVIVTILYISLGCLGYLQFGANIQGSITLNLP 327

GO:0015293 "symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015180 "L-alanine transmembrane transporter activity" evidence=IEA

GO:0015187 "glycine transmembrane transporter activity" evidence=IEA

GO:0015193 "L-proline transmembrane transporter activity" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0006865 "amino acid transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|F1NY02 SLC36A4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 179 (68.1 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
 Identities = 44/121 (36%), Positives = 70/121 (57%)

Query:   114 FRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFG-KLYEVPLFMGTFLFASLGI 172
             F  L  N+ + + L ++  YI RD  D   L P    + G K Y  PLF GT +FA  GI
Sbjct:   215 FLSLLANLSMAVSLVIIYQYIVRDIADPRKLPP----MVGWKKY--PLFFGTAVFAFEGI 268

Query:   173 GVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPK 232
             GV++ LE+ MK  + +   P  + N+G   ++ +Y+ +  +GY ++G  ++GSITLN+P+
Sbjct:   269 GVVLPLENRMKDTTRF---PLAL-NIGMGIVMTLYISLATLGYLRFGDDIKGSITLNLPQ 324

Query:   233 D 233
             D
Sbjct:   325 D 325

GO:0016021 "integral to membrane" evidence=IEA

GO:0015808 "L-alanine transport" evidence=IEA

GO:0015824 "proline transport" evidence=IEA

GO:0015827 "tryptophan transport" evidence=IEA

FB|FBgn0036116 CG7888 [Drosophila melanogaster (taxid:7227)]

 Score = 238 (88.8 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 48/115 (41%), Positives = 70/115 (60%)

Query:   120 NILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALE 179
             N +  +  G++CYYIFR+    P+   G  + FGK    PLF GT LFA   IGV++ LE
Sbjct:   216 NAITMVSFGIICYYIFRE----PVTTEGK-DAFGKPSNFPLFFGTVLFALEAIGVILPLE 270

Query:   180 DEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDD 234
             +EMKTP  +  +  G+ N+    I+ +Y+ +G+ GY  YG  V GSITLN+P+ +
Sbjct:   271 NEMKTPQKFGGS-CGVLNVSMVLIVFLYVGMGLFGYLNYGSAVLGSITLNMPEHE 324

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0036007 path "pathetic" [Drosophila melanogaster (taxid:7227)]

 Score = 174 (66.3 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
 Identities = 38/115 (33%), Positives = 65/115 (56%)

Query:   120 NILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALE 179
             N+ + +GLG+  YY+ +D    P +   +  ++  L   P F    +FA   IGV++ LE
Sbjct:   250 NVFMGLGLGITFYYLVQD---LPPVEERESVVWSTL---PQFFSITIFAMEAIGVVMPLE 303

Query:   180 DEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDD 234
             + MKTP S+     G+ + G + + +IY+ +G +GY +YG     SITLN+P ++
Sbjct:   304 NNMKTPQSFL-GICGVLSQGMSGVTLIYMLLGFLGYLRYGSATGESITLNLPIEE 357

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;NAS

GO:0040008 "regulation of growth" evidence=NAS

GO:0040007 "growth" evidence=IMP

GO:0003333 "amino acid transmembrane transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	235
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	1e-16

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 43/228 (18%)

Query: 7   IIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKN 66
           +++ F I  N  G+C  Y+ F  DN       F     ++ +++ +I  ++ I L+ + N
Sbjct: 86  LLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFDTCHISLVYFIIIFGLIFIPLSFIPN 145

Query: 67  LHFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIG 126
           L  LS  S + ++                                        ++ + I 
Sbjct: 146 LSALSILSLVAAV---------------------------------------SSLYIVIL 166

Query: 127 LGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPS 186
           +  V             L     +   KL  + L +G  +FA  G  VL+ +++ MK+PS
Sbjct: 167 VLSVAELGVLTAQGVGSL---GAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPS 223

Query: 187 SYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDD 234
            + K    +       + ++Y+ VG++GY  +G  V+G+I LN+PK D
Sbjct: 224 KF-KAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSD 270

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
KOG1304|consensus	449		100.0
PTZ00206	467	amino acid transporter; Provisional	99.94
KOG1303|consensus	437		99.93
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	99.91
PLN03074	473	auxin influx permease; Provisional	99.83
KOG4303|consensus	524		99.73
KOG1305|consensus	411		99.69
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.59
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	98.18
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	97.37
PRK10483	414	tryptophan permease; Provisional	97.02
PRK15132	403	tyrosine transporter TyrP; Provisional	96.61
PRK09664	415	tryptophan permease TnaB; Provisional	96.52
TIGR00814	397	stp serine transporter. The HAAAP family includes	96.14
PRK13629	443	threonine/serine transporter TdcC; Provisional	95.75
TIGR00909	429	2A0306 amino acid transporter.	95.7
TIGR00906	557	2A0303 cationic amino acid transport permease.	95.08
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	93.93
PRK11021	410	putative transporter; Provisional	93.61
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	93.58
TIGR00912	359	2A0309 spore germination protein (amino acid perme	93.42
KOG1287|consensus	479		93.3
PRK10655	438	potE putrescine transporter; Provisional	92.95
TIGR00930	953	2a30 K-Cl cotransporter.	92.49
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	92.12
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	92.01
PRK10644	445	arginine:agmatin antiporter; Provisional	91.53
TIGR00911	501	2A0308 L-type amino acid transporter.	91.31
PRK11357	445	frlA putative fructoselysine transporter; Provisio	91.18
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	91.06
PF03845	320	Spore_permease: Spore germination protein; InterPr	89.98
COG0531	466	PotE Amino acid transporters [Amino acid transport	89.89
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	89.88
PRK10580	457	proY putative proline-specific permease; Provision	88.28
PRK10746	461	putative transport protein YifK; Provisional	87.61
TIGR00907	482	2A0304 amino acid permease (GABA permease).	86.89
PRK10238	456	aromatic amino acid transporter; Provisional	86.88
PRK10197	446	gamma-aminobutyrate transporter; Provisional	86.47
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	86.14
PRK10249	458	phenylalanine transporter; Provisional	85.92
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	85.52
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	84.77
TIGR00913	478	2A0310 amino acid permease (yeast).	83.73
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	82.07

>KOG1304|consensus

Probab=100.00  E-value=4.3e-37  Score=290.96  Aligned_cols=184  Identities=35%  Similarity=0.738  Sum_probs=172.0

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921          1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI   80 (235)
Q Consensus         1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~   80 (235)
                      .|+++|++|++++++.|+|+||+|++|++++++++.+.. .+..++.+.|+++..+++++++++||+|.|+++|++    
T Consensus       134 ~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~-~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~----  208 (449)
T KOG1304|consen  134 YGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH-SPGVLSVRLYILIQLPPLLLLNLIRNLKILSPFSLF----  208 (449)
T ss_pred             hcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc-CCCCccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHH----
Confidence            489999999999999999999999999999999999844 346789999999999999999999999999999999    


Q ss_pred             hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCccccccccccchhH
Q psy16921         81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPL  160 (235)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (235)
                                                            ||++.++|+.++.+|.+++.     ++++|.+.+.++.++++
T Consensus       209 --------------------------------------Anv~~~~g~~ii~~y~~~~~-----~~~~~~~~~~~~~~~~l  245 (449)
T KOG1304|consen  209 --------------------------------------ANVFILVGLAIIMYYLVQDL-----PPTSDLPAVTGWSGLPL  245 (449)
T ss_pred             --------------------------------------HHHHHHHHHHHHHHHHHhcc-----CCccccccccchhhhHH
Confidence                                                  99999999999999998886     24578888888999999


Q ss_pred             HHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCccccccccCCCC
Q psy16921        161 FMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKD  233 (235)
Q Consensus       161 ~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~~~Il~nlp~~  233 (235)
                      ++|+.+|||||+++++|+||+||+|++|+.. .++++.+|.+++++|..+|++||++|||+++++||+|+|++
T Consensus       246 f~GtaifafEGig~VLPlEn~Mk~P~~F~g~-~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~  317 (449)
T KOG1304|consen  246 FFGTAIFAFEGIGMVLPLENSMKKPQKFPGP-FGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQE  317 (449)
T ss_pred             HHHHHHHHhccceEEEehhhcccChhhcCCc-cchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCcc
Confidence            9999999999999999999999999999953 56999999999999999999999999999999999999993

>PTZ00206 amino acid transporter; Provisional

Probab=99.94  E-value=2.3e-27  Score=226.60  Aligned_cols=190  Identities=16%  Similarity=0.187  Sum_probs=144.5

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCc----chhH-HHHHHHHHHHHHHhcccCcccccccch
Q psy16921          1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTS----LAKI-HWELIITVVMIVLNQVKNLHFLSPFSS   75 (235)
Q Consensus         1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~----~~~~-~~~~i~~vv~ipLs~i~~l~~Ls~~S~   75 (235)
                      +|++|++++++++.++++|.|++|++++||+++++++.......    ..++ .+.++..++++|++++|++++|+++|.
T Consensus       131 ~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~  210 (467)
T PTZ00206        131 LGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVST  210 (467)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHH
Confidence            48999999999999999999999999999999999875421111    1122 234556778999999999999999999


Q ss_pred             hhhhhhhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCC-------CCcc
Q psy16921         76 IESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPIL-------RPGD  148 (235)
Q Consensus        76 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~  148 (235)
                      +                                          +++++++..+.+.++.+.+..++..+       ...+
T Consensus       211 i------------------------------------------~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~  248 (467)
T PTZ00206        211 I------------------------------------------AVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAE  248 (467)
T ss_pred             H------------------------------------------HHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCc
Confidence            9                                          55554443333333333222111110       1123


Q ss_pred             ccccccccchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCccccccc
Q psy16921        149 VELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITL  228 (235)
Q Consensus       149 ~~~~~~~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~~~Il~  228 (235)
                      .+.|+...+.+.++|+++|||.||.+++|+++|||||++.++  .++...++.++.++|..+|++||++||++++++|+.
T Consensus       249 ~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~--~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Ill  326 (467)
T PTZ00206        249 IILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKF--VLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLL  326 (467)
T ss_pred             eEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHH--HHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHH
Confidence            344544456789999999999999999999999999876555  458899999999999999999999999999999999


Q ss_pred             cC-CCCC
Q psy16921        229 NI-PKDD  234 (235)
Q Consensus       229 nl-p~~~  234 (235)
                      |+ |.+|
T Consensus       327 n~~p~~~  333 (467)
T PTZ00206        327 MYDPVNE  333 (467)
T ss_pred             hCCCCCC
Confidence            99 5655

>KOG1303|consensus

Probab=99.93  E-value=4.1e-27  Score=223.79  Aligned_cols=184  Identities=26%  Similarity=0.430  Sum_probs=147.5

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCC-cchhHHHHHHHHHHHHHHhcccCcccccccchhhhh
Q psy16921          1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDT-SLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESL   79 (235)
Q Consensus         1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~-~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~   79 (235)
                      +|+++|+++..++..+++|+|++|++..||++..+.+..+.+. ..++++|+++.+.+.+|++|+||++.++|+|..   
T Consensus       115 fG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~---  191 (437)
T KOG1303|consen  115 FGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLV---  191 (437)
T ss_pred             hCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHHH---
Confidence            4788899999999999999999999999999999999997665 566789999999999999999999999999999   


Q ss_pred             hhhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCccccccccccchh
Q psy16921         80 INQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVP  159 (235)
Q Consensus        80 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (235)
                             | .+||+.|+.++++                       .        +..++..... ..++++..++....+
T Consensus       192 -------~-avmS~~~a~~~~~-----------------------~--------g~~~g~~~~~-~~~~~~~~~~~~~~f  231 (437)
T KOG1303|consen  192 -------G-AVMSTLYAVILIV-----------------------L--------GIADGVGFCA-PSGGYLDLGTIPTVF  231 (437)
T ss_pred             -------H-HHHHHHHHHHHHH-----------------------H--------hhccccccCC-cccCcccCCCCcchh
Confidence                   3 3344444333332                       1        1112211110 112232222222227


Q ss_pred             HHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCccccccccCC
Q psy16921        160 LFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIP  231 (235)
Q Consensus       160 ~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~~~Il~nlp  231 (235)
                      +++|+++|+|.||+++||||++||+|++|+|    ++.+++++++.+|+.+++.||++|||+++|+++.|++
T Consensus       232 ~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~----~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~  299 (437)
T KOG1303|consen  232 TALGIIAFAYGGHAVLPEIQHTMKSPPKFKK----ALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ  299 (437)
T ss_pred             hhhhheeeeecCCeeeeehHhhcCCchhhhh----HHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc
Confidence            9999999999999999999999999999776    7999999999999999999999999999999999995

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=99.91  E-value=6.6e-27  Score=215.08  Aligned_cols=191  Identities=28%  Similarity=0.448  Sum_probs=153.3

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921          1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI   80 (235)
Q Consensus         1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~   80 (235)
                      .|+++++++++++.++++|.|++|+++.+|+++++.+....+...++..|.++..++++|++++|++++++++|.+    
T Consensus        78 ~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~----  153 (409)
T PF01490_consen   78 FGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSIL----  153 (409)
T ss_pred             ccccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhh----
Confidence            4899999999999999999999999999999999998875444567778888899999999999999999999999    


Q ss_pred             hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCC-ccccccccccchh
Q psy16921         81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRP-GDVELFGKLYEVP  159 (235)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  159 (235)
                                                            ++++++..+..+.++.......++.+.+ .+.....++.+++
T Consensus       154 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (409)
T PF01490_consen  154 --------------------------------------GLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFF  195 (409)
T ss_pred             --------------------------------------hhhccceeeeeecceeeeeecccccccccccccccchhhHHH
Confidence                                                  5555544222222222222211111111 1111223456889


Q ss_pred             HHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCccccccccCCCCC
Q psy16921        160 LFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDD  234 (235)
Q Consensus       160 ~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~~~Il~nlp~~~  234 (235)
                      .++|+++|||.||+++|++++|||+|++++|. +++...++.+++++|+.+|+.||++||++++++++.|+|+++
T Consensus       196 ~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~-~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~  269 (409)
T PF01490_consen  196 SAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKM-KKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDD  269 (409)
T ss_pred             HhhhhhhhhhhcccccceeeeeccCCcccccc-ceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcc
Confidence            99999999999999999999999999998843 568999999999999999999999999999999999999986

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>PLN03074 auxin influx permease; Provisional

Probab=99.83  E-value=2.4e-21  Score=185.91  Aligned_cols=178  Identities=13%  Similarity=0.076  Sum_probs=132.6

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921          1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI   80 (235)
Q Consensus         1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~   80 (235)
                      +|++++.+..++..+.++|.|+.|++..++++.++-      ...+++.|+++.+++.+|++++|++|+++++|.+    
T Consensus       130 ~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~------~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~i----  199 (473)
T PLN03074        130 LGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIN------DNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL----  199 (473)
T ss_pred             cChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC------CCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHH----
Confidence            388899999999999999999999999998877652      3457789999999999999999999999999998    


Q ss_pred             hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCccccccccccchhH
Q psy16921         81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPL  160 (235)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (235)
                                                            +..+.+.....+......+....++   ++ +...++...+.
T Consensus       200 --------------------------------------g~~~tl~~av~i~i~~i~~~~~~~~---~~-~~~~~~~~~f~  237 (473)
T PLN03074        200 --------------------------------------GLLMTTYTAWYMTIAALSHGQVEGV---KH-SGPTKLVLYFT  237 (473)
T ss_pred             --------------------------------------HHHHHHHHHHHHHHHHHhhcCCCCC---CC-CCchhHHHHHH
Confidence                                                  3222111100111011111100111   11 11123445566


Q ss_pred             HHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCccc--cccccCCCCC
Q psy16921        161 FMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEG--SITLNIPKDD  234 (235)
Q Consensus       161 ~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~~--~Il~nlp~~~  234 (235)
                      ++++++|+|+||+++||||++||||++|++    ++..++..++.+|+.+|+.||++|||++++  +.+.|+|++.
T Consensus       238 ~~~~i~faf~g~~v~~~I~~~M~~P~~F~~----~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~  309 (473)
T PLN03074        238 GATNILYTFGGHAVTVEIMHAMWKPQKFKY----IYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSG  309 (473)
T ss_pred             HHHHHHHHhcccccHHHHHHhccChhcccc----hHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCch
Confidence            777899999999999999999999999997    577899999999999999999999999875  4566788653

>KOG4303|consensus

Probab=99.73  E-value=6.3e-20  Score=169.27  Aligned_cols=178  Identities=20%  Similarity=0.326  Sum_probs=153.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhhhhh
Q psy16921          4 VNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLINQR   83 (235)
Q Consensus         4 ~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~~~~   83 (235)
                      .|.+.|.+.+.++.+.+|+.|++..||.+..-++    ..+.+++-|+++....++|++++|++|..|-+|..       
T Consensus       199 lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP----~~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~-------  267 (524)
T KOG4303|consen  199 LGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFP----GLSVDKASWMMITSASLLPCSFLKDLKIVSRLSFF-------  267 (524)
T ss_pred             cchheeeHHHHHHHHHHHHhhhheechhhhccCC----CCCccccchhhhhhHHHhhhHHHHHHHHHHHHHHH-------
Confidence            4667899999999999999999999999988764    34678899999999999999999999999999888       


Q ss_pred             ccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCccccccccccchhHHHH
Q psy16921         84 SKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMG  163 (235)
Q Consensus        84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  163 (235)
                                                         |++.-++--.+++.|+....-+.+|   +.+++-.+...+|..+|
T Consensus       268 -----------------------------------ct~sH~viN~i~v~YCLs~~~dW~w---skv~Fsidi~~fPisvG  309 (524)
T KOG4303|consen  268 -----------------------------------CTISHLVINLIMVLYCLSFVSDWSW---SKVTFSIDINTFPISVG  309 (524)
T ss_pred             -----------------------------------HHHHHHHHHHHHHHHHHHHhhhccc---eeEEEEEEcccCceEEE
Confidence                                               6665555445555577655544443   56666567788999999


Q ss_pred             HHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCccccccccCCCCC
Q psy16921        164 TFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDD  234 (235)
Q Consensus       164 ~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~~~Il~nlp~~~  234 (235)
                      +++|+|..|.-+|+++..|++|++|+-    .+.++-+..+++...+|.+||++|||++++.|+.|+|...
T Consensus       310 ~iVFsYTSqIFLP~LEGNM~~ps~Fn~----Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qs  376 (524)
T KOG4303|consen  310 MIVFSYTSQIFLPNLEGNMKNPSQFNV----MLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQS  376 (524)
T ss_pred             EEEEeeeceeeccccccccCChhHhee----eeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccc
Confidence            999999999999999999999999997    6899999999999999999999999999999999999853

>KOG1305|consensus

Probab=99.69  E-value=6.2e-19  Score=166.85  Aligned_cols=188  Identities=18%  Similarity=0.215  Sum_probs=135.8

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCc----chhHH--HHHHHHHHHHHHhcccCcccccccc
Q psy16921          1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTS----LAKIH--WELIITVVMIVLNQVKNLHFLSPFS   74 (235)
Q Consensus         1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~----~~~~~--~~~i~~vv~ipLs~i~~l~~Ls~~S   74 (235)
                      +|+.|+..+.+.+....+| |++|++.++|.++.+.+....++.    +.++.  |++..+.++.||+..|++.+|++.|
T Consensus        77 ~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS  155 (411)
T KOG1305|consen   77 FGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTS  155 (411)
T ss_pred             cCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHH
Confidence            3666755555555555555 699999999999988876643222    22232  4677889999999999999999999


Q ss_pred             hhhhhhhhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCcccccccc
Q psy16921         75 SIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGK  154 (235)
Q Consensus        75 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  154 (235)
                      .+                                          +.+..+....++.++.+......+ ....+.+.-..
T Consensus       156 ~~------------------------------------------s~~~~~~fv~~vv~~~~~~~~~~~-~~~~~~~~~~~  192 (411)
T KOG1305|consen  156 AL------------------------------------------SLASVVYFVVLVVYKYFQGPCALG-RLSYLVPNLSS  192 (411)
T ss_pred             HH------------------------------------------HHHHHHHHHHHHHHHHHhcccccC-CcccccCCcch
Confidence            99                                          322222222233322222110000 00111211112


Q ss_pred             ccchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCccccccccCCCCC
Q psy16921        155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDD  234 (235)
Q Consensus       155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~~~Il~nlp~~~  234 (235)
                      +++++..+++++|||.||.+..+|++|||||++.++  +++...+...+..+|..+|+.||+.|||++++|++.+.|+++
T Consensus       193 ~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i--~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~  270 (411)
T KOG1305|consen  193 FSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKI--QRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSIL  270 (411)
T ss_pred             hhhhhhhhhhhheeeeccccceeeeeeeeCchHHHH--HHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCccc
Confidence            357889999999999999999999999999997766  678999999999999999999999999999999999999875

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.59  E-value=1.3e-15  Score=144.13  Aligned_cols=187  Identities=18%  Similarity=0.165  Sum_probs=142.5

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921          1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI   80 (235)
Q Consensus         1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~   80 (235)
                      .|++|+++.++.+.+.++|.+.+|.+..+|.+++.+++.....+.+++.+.++...++.++++.++...++..|.+    
T Consensus        82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l----  157 (415)
T COG0814          82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLL----  157 (415)
T ss_pred             hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHH----
Confidence            4899999999999999999999999999999999999865443356677788888888899999999999998888    


Q ss_pred             hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCC-CCCccccccccccchh
Q psy16921         81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPI-LRPGDVELFGKLYEVP  159 (235)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  159 (235)
                                                            ....+.+......+.. .+...+.. ..+.+.  ...+..+.
T Consensus       158 --------------------------------------~~~~v~~~~~l~~~~~-~~~~~~~l~~~~~~~--~~~~~~~~  196 (415)
T COG0814         158 --------------------------------------VFGKVIYLVLLVVYLI-PHWNPANLFALPSAS--QSFWKYLL  196 (415)
T ss_pred             --------------------------------------HHHHHHHHHHHHHHHh-cccCHHHHhcccccc--hhhHHHHH
Confidence                                                  2222211111111111 11100000 000110  12456778


Q ss_pred             HHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCccccccccCCCCC
Q psy16921        160 LFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDD  234 (235)
Q Consensus       160 ~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~~~Il~nlp~~~  234 (235)
                      .++|.+.|||+||+++++++++||++++.+.  +++...+..+..++|..+++.+|..+|+++.++++.+.++++
T Consensus       197 ~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~--~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~  269 (415)
T COG0814         197 LAIPVFVFSFGFHGNIPSLVNYMRKNSKKAV--RKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNI  269 (415)
T ss_pred             HHhhHHHhhhhCCccchHHHHHhccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchH
Confidence            9999999999999999999999998876311  348999999999999999999999999999999999998765

>TIGR00837 araaP aromatic amino acid transport protein

Probab=98.18  E-value=1.5e-06  Score=80.39  Aligned_cols=169  Identities=8%  Similarity=-0.037  Sum_probs=101.2

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921          1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI   80 (235)
Q Consensus         1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~   80 (235)
                      +|+++++++.......++..+.+|.+..++.+..+++..... ..+.+...++...++.+++.. ..|....++.+    
T Consensus        69 ~G~~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~v~~~l~~~-G~~~~~~v~~i----  142 (381)
T TIGR00837        69 LGKTGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEYFGF-PWSARAIVLIFTVLFGSFVWL-STSAVDRITRV----  142 (381)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHh-chhHHHHHHHH----
Confidence            588999999999999999999999999999999988764321 223333333344444454443 44555555544    


Q ss_pred             hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCccccccccccchhH
Q psy16921         81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPL  160 (235)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (235)
                            .                           +.  ..+..+..+....   ..+...++. .+.... ...+.++..
T Consensus       143 ------~---------------------------~~--~~l~~l~~~ii~~---~~~~~~~~~-~~~~~~-~~~~~~~~~  182 (381)
T TIGR00837       143 ------L---------------------------IF--GKIIAFALVFSGL---LPHVKGDLL-LDVALD-TSYWPYILS  182 (381)
T ss_pred             ------H---------------------------HH--HHHHHHHHHHHHH---HhhccHHHH-hcCccc-cccHHHHHH
Confidence                  0                           00  1111111011111   111100000 010000 012445667


Q ss_pred             HHHHHHHHhccccchhhhhhhhcCCC-CCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcc
Q psy16921        161 FMGTFLFASLGIGVLIALEDEMKTPS-SYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYG  219 (235)
Q Consensus       161 ~~G~~~faf~g~~~l~~I~~~m~~p~-~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG  219 (235)
                      +++...++|.+|++++++.+++++|+ +.    +|+...+..+++++|+.+........+
T Consensus       183 a~~~~~~~fg~~~~i~~~~~~~~~~~k~i----~raii~g~~i~~~lY~l~~~~~~g~~~  238 (381)
T TIGR00837       183 ALPVCLTSFGFHGNVPSLYKYYDGNVKKV----KKSILIGSAIALVLYILWQLATMGNLP  238 (381)
T ss_pred             HHHHHHHHHHcccccHHHHHHhccCHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            88888899988889999999998553 33    347889999999999988665554443

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.37  E-value=0.00021  Score=67.59  Aligned_cols=160  Identities=11%  Similarity=0.094  Sum_probs=92.5

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921          1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI   80 (235)
Q Consensus         1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~   80 (235)
                      .|+.|+++..+...+..++.+++|..-.++.+++.++.... .+.+++.-.++..++...+.... -|.....+..    
T Consensus        75 lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~-~~~~~~~~~~~f~~i~~~iv~~g-~~~v~~~n~~----  148 (394)
T PF03222_consen   75 LGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG-TDLSPWLSSLLFTIIFGGIVYFG-TKAVDRINRV----  148 (394)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHHHHHhh-HHHHHHHHHH----
Confidence            48999999999999999999999999999999999987642 23333332222222222222221 1111111111    


Q ss_pred             hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCccccccccccchhH
Q psy16921         81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPL  160 (235)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (235)
                                                            .....+..+.....+.+.+. +.+... ...+...++...+.
T Consensus       149 --------------------------------------lv~~~i~~~~~l~~~~~p~~-~~~~L~-~~~~~~~~~~~~~~  188 (394)
T PF03222_consen  149 --------------------------------------LVFGMIISFIILVVYLIPHW-NPSNLL-DAPPSPSDWSYILP  188 (394)
T ss_pred             --------------------------------------HHHHHHHHHHHHHHHHhhhc-CHHHhh-ccccccccHHHHHH
Confidence                                                  00000000111111111221 000000 10111234667789


Q ss_pred             HHHHHHHHhccccchhhhhhhhc-CCCCCCCCcchhhHHHHHHHHHHHHHH
Q psy16921        161 FMGTFLFASLGIGVLIALEDEMK-TPSSYRKNPFGIFNMGFTTIIIIYLFV  210 (235)
Q Consensus       161 ~~G~~~faf~g~~~l~~I~~~m~-~p~~~~~~~~~v~~~s~~~~~~~Y~~~  210 (235)
                      .++..++||..|+++|++.+.++ |++|.||    ++..+..+..++|+..
T Consensus       189 ~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~----ai~~Gs~i~lv~yl~w  235 (394)
T PF03222_consen  189 ALPVLVFSFGFHNIVPSLVKYLGGDPKKIRK----AIIIGSLIPLVMYLLW  235 (394)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhCccHHHHHH----HHHHHHHHHHHHHHHH
Confidence            99999999999999999999998 4455444    7888888888888765

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK10483 tryptophan permease; Provisional

Probab=97.02  E-value=0.00064  Score=65.10  Aligned_cols=160  Identities=9%  Similarity=0.036  Sum_probs=91.4

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921          1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI   80 (235)
Q Consensus         1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~   80 (235)
                      .|+.|+++..+......++.+++|+-=.||.+.+.+++.  +.+.+.+.=-++..++.-.+.+.. .|....++-+  |+
T Consensus        83 LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~--~~~i~~~~~~llF~~~~~~iv~~g-t~~vd~~n~~--l~  157 (414)
T PRK10483         83 LGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM--SLNVPARAAGFGFALLVAFVVWLS-TKAVSRMTAI--VL  157 (414)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHhh-hhHHHHHHHH--HH
Confidence            488999999999999999999999999999999999763  122222222222333333333332 1333332222  00


Q ss_pred             hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCccccccccccchhH
Q psy16921         81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPL  160 (235)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (235)
                            +           |+          +       ...+.+++... -........+.+    .+.  ...+..++.
T Consensus       158 ------~-----------~~----------i-------~~f~~~~~~l~-~~i~~~~L~~~~----~~~--~~~~~~~~~  196 (414)
T PRK10483        158 ------G-----------AK----------V-------ITFFLTFGSLL-GHVQPATLFNVA----ESN--ASYAPYLLM  196 (414)
T ss_pred             ------H-----------HH----------H-------HHHHHHHHHHH-hhcCHHHHhccc----ccc--chhHHHHHH
Confidence                  0           00          0       11111111100 000000000000    010  011234668


Q ss_pred             HHHHHHHHhccccchhhhhhhhcC-CCCCCCCcchhhHHHHHHHHHHHHHH
Q psy16921        161 FMGTFLFASLGIGVLIALEDEMKT-PSSYRKNPFGIFNMGFTTIIIIYLFV  210 (235)
Q Consensus       161 ~~G~~~faf~g~~~l~~I~~~m~~-p~~~~~~~~~v~~~s~~~~~~~Y~~~  210 (235)
                      ++++..+||..|+++|++++.+++ ++|-|    +++..+..+..++|+..
T Consensus       197 alPvl~~SFgfh~iIPsl~~y~~~d~~kir----~~I~iGs~Iplv~yl~W  243 (414)
T PRK10483        197 TLPFCLASFGYHGNVPSLMKYYGKDPKTIV----KCLVYGTLMALALYTIW  243 (414)
T ss_pred             HHHHHHhhccCCCcchHHHHHhCcCHHHHH----HHHHHHHHHHHHHHHHH
Confidence            899999999999999999999975 44444    48889999999999873

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=96.61  E-value=0.0033  Score=59.91  Aligned_cols=163  Identities=11%  Similarity=0.097  Sum_probs=92.4

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921          1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI   80 (235)
Q Consensus         1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~   80 (235)
                      .|+.|+++..+......+..+.+|..-.|+.+.+..++.... +.+.....++..++.....+.. -|....+.-.   +
T Consensus        75 LG~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~-~i~~~~~~l~F~~~~~~iv~~g-~~~v~~~n~~---L  149 (403)
T PRK15132         75 LGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI-SMSPTAGVLLFTLVAGGVVCVG-TSSVDLFNRF---L  149 (403)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHHhcc-HHHHHHHHHH---H
Confidence            489999999999999999999999999999999988764321 2233222222222222222221 1222111111   0


Q ss_pred             hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCccccccccccchhH
Q psy16921         81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPL  160 (235)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (235)
                                                    ..      ..+..++   ....+..++...+.   ..+.+.  +...++.
T Consensus       150 ------------------------------~~------~~ii~~~---~~~~~l~p~~~~~~---L~~~~~--~~~~~~~  185 (403)
T PRK15132        150 ------------------------------FS------AKIIFLV---VMLALMMPHIHKVN---LLTLPL--QQGLALS  185 (403)
T ss_pred             ------------------------------HH------HHHHHHH---HHHHHHHHhcCHHH---HhcCCc--cccHHHH
Confidence                                          00      1011100   01111122210000   001010  1113678


Q ss_pred             HHHHHHHHhccccchhhhhhhhcCC-CCCCCCcchhhHHHHHHHHHHHHHHHhhhHh
Q psy16921        161 FMGTFLFASLGIGVLIALEDEMKTP-SSYRKNPFGIFNMGFTTIIIIYLFVGVIGYY  216 (235)
Q Consensus       161 ~~G~~~faf~g~~~l~~I~~~m~~p-~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~  216 (235)
                      .+++..+||..|+++|++.+.+++. +|-|    |++..+..+..++|+..=.....
T Consensus       186 ~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~----k~i~~Gs~i~li~yl~W~~~~lg  238 (403)
T PRK15132        186 AIPVIFTSFGFHGSVPSIVSYMGGNIRKLR----WVFIIGSAIPLVAYIFWQLATLG  238 (403)
T ss_pred             HHHHHHHHhhCCcccHHHHHHhCcCHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999754 4444    47888999999988866554443

>PRK09664 tryptophan permease TnaB; Provisional

Probab=96.52  E-value=0.0052  Score=58.91  Aligned_cols=162  Identities=12%  Similarity=0.022  Sum_probs=88.2

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921          1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI   80 (235)
Q Consensus         1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~   80 (235)
                      .|+.|+++..+...+..++.+++|+--.|+.+++.+++.. +.+.+.+.--++..++.-++.+... |....++-+  |+
T Consensus        81 LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~-~~~i~~~~~~llF~~~~~~~v~~gt-~~vd~~nr~--l~  156 (415)
T PRK09664         81 IGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNL-GYHANPRIVGICTAIFVASVLWISS-LAASRITSL--FL  156 (415)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc-cCCCcHHHHHHHHHHHHHHHHHhch-hHHHHHHHH--HH
Confidence            4899999999999999999999999999999999997631 2222333222333333333333322 333333322  00


Q ss_pred             hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCccccccccccchhH
Q psy16921         81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPL  160 (235)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (235)
                            +.+                            ....+.+++.. .-........+.++  ..+.+  ..+..+..
T Consensus       157 ------~~~----------------------------ii~f~~~~~~l-~~~i~~~~L~~~~~--~~~~~--~~~~~i~~  197 (415)
T PRK09664        157 ------GLK----------------------------IISFVIVFGSF-FFQVDYSILRDATS--TTAGT--SYFPYIFM  197 (415)
T ss_pred             ------HHH----------------------------HHHHHHHHHHH-hhcccHHHHhcCcc--ccccc--hHHHHHHH
Confidence                  000                            01111111100 00001111111110  00000  00223567


Q ss_pred             HHHHHHHHhccccchhhhhhhhcCC-CCCCCCcchhhHHHHHHHHHHHHH
Q psy16921        161 FMGTFLFASLGIGVLIALEDEMKTP-SSYRKNPFGIFNMGFTTIIIIYLF  209 (235)
Q Consensus       161 ~~G~~~faf~g~~~l~~I~~~m~~p-~~~~~~~~~v~~~s~~~~~~~Y~~  209 (235)
                      ++++..+||..|+++|++.+.+++. ++.||    .+..+..+..++|..
T Consensus       198 alPVl~~SFgfh~iIPsl~~y~~~d~~~~~k----aIl~Gs~IpLviY~~  243 (415)
T PRK09664        198 ALPVCLASFGFHGNIPSLIICYGKRKDKLIK----SVVFGSLLALVIYLF  243 (415)
T ss_pred             HHHHHHHhhhCCCcchHHHHHhCccHHHHHH----HHHHHHHHHHHHHHH
Confidence            8999999999999999999998744 44444    566777777777743

>TIGR00814 stp serine transporter

Probab=96.14  E-value=0.0077  Score=57.21  Aligned_cols=174  Identities=10%  Similarity=0.032  Sum_probs=95.7

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921          1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI   80 (235)
Q Consensus         1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~   80 (235)
                      .|+++..+..+...+..+-.+.+|..-.++.+.+.+.+.... +...+....+..+..+........+.+..++.+    
T Consensus        76 fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~-~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~i----  150 (397)
T TIGR00814        76 FGKNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGT-APPLRGLLSLALILILVAIMSFGEKLLFKIMGP----  150 (397)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHH----
Confidence            388899999999999999999999999999998888764311 112232222222222122222233433333322    


Q ss_pred             hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCccccc-cccccchh
Q psy16921         81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVEL-FGKLYEVP  159 (235)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (235)
                                                            -....++.+.....+..++...+.   ..+.+. .+.+.++.
T Consensus       151 --------------------------------------l~~~~ii~l~~l~~~lip~~~~~~---L~~~p~~~~~~~~i~  189 (397)
T TIGR00814       151 --------------------------------------LVFPLVLILVLLSLYLIPHWNGAN---LTTFPSFNGFLKTLW  189 (397)
T ss_pred             --------------------------------------HHHHHHHHHHHHHHHHHHHcCHHH---HhcCCcccchHHHHH
Confidence                                                  000000101111111112210000   000110 01234577


Q ss_pred             HHHHHHHHHhccccchhhhhhhh----cCCC-CCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccC
Q psy16921        160 LFMGTFLFASLGIGVLIALEDEM----KTPS-SYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQL  221 (235)
Q Consensus       160 ~~~G~~~faf~g~~~l~~I~~~m----~~p~-~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~  221 (235)
                      .+++...+||.+|+++++...+.    +||+ ..+|. +|+...+..+..++|+..-+.+-...+.+
T Consensus       190 ~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~-~k~i~~~~~i~~~~y~~~~~s~~~~l~~~  255 (397)
T TIGR00814       190 LTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKC-LRIMKGASLILVATVMFFVFSCVLSLSPA  255 (397)
T ss_pred             HHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence            89999999999999999997333    3232 11221 45788899999888888777666666544

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=95.75  E-value=0.039  Score=53.47  Aligned_cols=179  Identities=13%  Similarity=0.121  Sum_probs=95.7

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921          1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI   80 (235)
Q Consensus         1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~   80 (235)
                      .|+.|+.+..+..++..+-.+.+|...+.+.++..+.+.....+.++...-++...++.......+ |.+-.++..    
T Consensus        92 lG~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~-~~v~kv~~~----  166 (443)
T PRK13629         92 FGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGK-DLMVKVMSY----  166 (443)
T ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHH----
Confidence            488999999999999999999999999999998876655322233322222233333323333221 222222221    


Q ss_pred             hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCC-Cccccccccccchh
Q psy16921         81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILR-PGDVELFGKLYEVP  159 (235)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  159 (235)
                                                   +....    ...+.+.+...+-........+.++.. ++..+. +....+.
T Consensus       167 -----------------------------Lv~~~----i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~-~~~~~l~  212 (443)
T PRK13629        167 -----------------------------LVWPF----IASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHD-GILVTVW  212 (443)
T ss_pred             -----------------------------HHHHH----HHHHHHHHHHHHHHcCHHHHhcCccccccccccc-cHHHHHH
Confidence                                         00000    111111111111111111111111000 000000 0012367


Q ss_pred             HHHHHHHHHhccccchhhhhhhhcCC-C-----C--CCCCcchhhHHHHHHHHHHHHHHHhhhHhhcc
Q psy16921        160 LFMGTFLFASLGIGVLIALEDEMKTP-S-----S--YRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYG  219 (235)
Q Consensus       160 ~~~G~~~faf~g~~~l~~I~~~m~~p-~-----~--~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG  219 (235)
                      .+++..++||.-|+++++..+.+|+. +     +  .+|. ++++..+..+..++|+..-+.+-..-+
T Consensus       213 ~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~-~rii~~gs~i~lv~y~fwv~S~~gsLs  279 (443)
T PRK13629        213 LGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKC-SQIISRASMLMVAVVMFFAFSCLFTLS  279 (443)
T ss_pred             HHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            88899999999999999998885332 1     1  2222 568889999999999887766655444

>TIGR00909 2A0306 amino acid transporter

Probab=95.70  E-value=0.079  Score=49.59  Aligned_cols=58  Identities=16%  Similarity=0.268  Sum_probs=45.9

Q ss_pred             ccchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhH
Q psy16921        155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGY  215 (235)
Q Consensus       155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY  215 (235)
                      ...+..++....|+|.|........+|+|||+|--   +|.+..+...+.++|+.......
T Consensus       194 ~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~i---p~ai~~~~~~~~v~Yil~~~~~~  251 (429)
T TIGR00909       194 FGGVGAATALVFFAFIGFEAISTAAEEVKNPERDI---PKAIILSLIVVTLLYVLVAAVIL  251 (429)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccc---cHHHHHHHHHHHHHHHHHHHHHh
Confidence            34566777788999999999999999999996432   23788999999999998865443

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=95.08  E-value=0.18  Score=49.82  Aligned_cols=54  Identities=17%  Similarity=0.221  Sum_probs=45.1

Q ss_pred             cchhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHhh
Q psy16921        156 YEVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGVI  213 (235)
Q Consensus       156 ~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~~  213 (235)
                      .++..+.....|+|.|-..+...-+|+|||+| .+    +....++.+++++|..+.+.
T Consensus       231 ~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP----~aii~sl~i~~vlY~lv~~~  285 (557)
T TIGR00906       231 TGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIP----IGIVTSLLVCFVAYFLMSAA  285 (557)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHhccCcccccc----HHHHHHHHHHHHHHHHHHHH
Confidence            35667777888999999999999999999975 44    37889999999999987654

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=93.93  E-value=0.042  Score=51.15  Aligned_cols=60  Identities=15%  Similarity=0.168  Sum_probs=48.4

Q ss_pred             chhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccC
Q psy16921        157 EVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQL  221 (235)
Q Consensus       157 ~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~  221 (235)
                      .....++...|+|.|-.......+|+|| ++.+    |++..+...+.++|......-....+++
T Consensus       189 ~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip----~ai~~~~~~~~i~y~l~~~~~~~~~~~~  248 (426)
T PF13520_consen  189 GFLAGFSVAFFAFSGFEAIASLAEENKN-KTIP----RAIIISIIIVAIIYILFSIALLGALPDD  248 (426)
T ss_dssp             HHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHH----HHHHHHHHHHHHHHHHHHHHHHTTSTHC
T ss_pred             chhhHHHHHHhhcccccccccccccccc-hhhe----eecccchhHHHHHHhhhhheeeecccch
Confidence            4567888899999999999999999887 4444    4788999999999999877666655553

...

>PRK11021 putative transporter; Provisional

Probab=93.61  E-value=0.45  Score=44.50  Aligned_cols=55  Identities=18%  Similarity=0.387  Sum_probs=46.0

Q ss_pred             ccchhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHhh
Q psy16921        155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGVI  213 (235)
Q Consensus       155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~~  213 (235)
                      +.++..++....|+|.|.......-+|+|||+| .+|    ++..+...+.++|+...+.
T Consensus       176 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPr----Ai~~~~~~~~~lYil~~~~  231 (410)
T PRK11021        176 WSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPR----ALMIGLLLAGLVYWACTVV  231 (410)
T ss_pred             HHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccH----HHHHHHHHHHHHHHHHHHH
Confidence            455667788888999999999999999999974 444    7889999999999987654

>TIGR00908 2A0305 ethanolamine permease

Probab=93.58  E-value=0.65  Score=43.84  Aligned_cols=52  Identities=13%  Similarity=0.057  Sum_probs=40.5

Q ss_pred             chhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHh
Q psy16921        157 EVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGV  212 (235)
Q Consensus       157 ~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~  212 (235)
                      .+..++....|+|.|.......-+|+|||+| .+|    ++..+..++.++|+..-.
T Consensus       192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~ipr----ai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       192 GVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPR----GLIGAILTLLALAAGILV  244 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCH----HHHHHHHHHHHHHHHHHH
Confidence            4455666678999999999999999999975 444    677888888888876644

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=93.42  E-value=0.14  Score=46.88  Aligned_cols=57  Identities=14%  Similarity=0.194  Sum_probs=46.4

Q ss_pred             HHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCccc
Q psy16921        164 TFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEG  224 (235)
Q Consensus       164 ~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~~  224 (235)
                      ...++|.+...+.....++|||++.+|    ....+...++++|...-+..-..+|.+..+
T Consensus       187 ~~~~~f~g~~i~~~~~~~~~~~~~~~k----~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~  243 (359)
T TIGR00912       187 VVTFAFGEIEIFFLLFPLLSKKKKIKK----SIIKAIIIGVLLYILTTFVSISVFGGNVTK  243 (359)
T ss_pred             HhhhhhHHHHHHHHHHHHhCChhhhHH----HHHHHHHHHHHHHHHHHHHHHheecHHHhh
Confidence            456888888888888899999887665    788999999999999888888888865433

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>KOG1287|consensus

Probab=93.30  E-value=1.2  Score=43.63  Aligned_cols=57  Identities=23%  Similarity=0.265  Sum_probs=46.8

Q ss_pred             ccchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhh
Q psy16921        155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIG  214 (235)
Q Consensus       155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~G  214 (235)
                      ..++.+++=.-.|||.|=..+=.+-+|+|||+|=-   +++...++.+++++|+.+=+..
T Consensus       203 ~g~i~lafysglfa~~GWd~lN~vteEiknP~ktL---P~Ai~isi~lvt~iYil~NvAy  259 (479)
T KOG1287|consen  203 VGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTL---PRAILISIPLVTVIYVLVNVAY  259 (479)
T ss_pred             hHHHHHHHHHhhhcccCchhhccchHhhcCccccc---hHHHHHhhHHHHHHHHHhHhhe
Confidence            34577888888899999988888999999996433   3489999999999999986644

>PRK10655 potE putrescine transporter; Provisional

Probab=92.95  E-value=0.37  Score=45.44  Aligned_cols=54  Identities=20%  Similarity=0.187  Sum_probs=43.6

Q ss_pred             chhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHhhh
Q psy16921        157 EVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGVIG  214 (235)
Q Consensus       157 ~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~~G  214 (235)
                      .+..++....|+|.|-......-+|+|||+| .+|    ++..+...+.++|+......
T Consensus       190 ~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPr----Ai~~~~~~~~~~Y~l~~~~~  244 (438)
T PRK10655        190 AVGSSIAMTLWAFLGLESACANSDAVENPERNVPI----AVLGGTLGAAVIYIVSTNVI  244 (438)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccH----HHHHHHHHHHHHHHHHHHHH
Confidence            4445566778999999999999999999974 444    78899999999998866543

>TIGR00930 2a30 K-Cl cotransporter

Probab=92.49  E-value=1.1  Score=47.53  Aligned_cols=52  Identities=19%  Similarity=0.185  Sum_probs=42.5

Q ss_pred             hhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy16921        158 VPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGV  212 (235)
Q Consensus       158 ~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~  212 (235)
                      +...+|++.+||.|.....++-+|+|||+|--.   +....++.+++++|+.+.+
T Consensus       282 f~~~~ai~F~A~tGi~agan~sgElKnP~r~IP---ratl~ai~i~~vlYllv~~  333 (953)
T TIGR00930       282 FFSLFGIFFPSVTGILAGANISGDLKDPQKAIP---KGTLLAILTTTVVYLGSVV  333 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChhhhhH---HHHHHHHHHHHHHHHHHHH
Confidence            566677777799998889999999999974322   3688999999999999875

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=92.12  E-value=0.49  Score=45.31  Aligned_cols=56  Identities=20%  Similarity=0.266  Sum_probs=43.9

Q ss_pred             cchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhH
Q psy16921        156 YEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGY  215 (235)
Q Consensus       156 ~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY  215 (235)
                      ..+..++....|+|.|-......-+|+||+++.+|    .+..+..++.++|+.......
T Consensus       199 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPr----ai~~~~~i~~~~Yil~~~~~~  254 (473)
T TIGR00905       199 SQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGK----ATVLGTLGALVIYILITLLSL  254 (473)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchH----HHHHHHHHHHHHHHHHHHHHH
Confidence            34556677788999999999999999999334444    788999999999998876543

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=92.01  E-value=0.37  Score=45.62  Aligned_cols=57  Identities=16%  Similarity=0.067  Sum_probs=47.3

Q ss_pred             ccchhHHHHHHHHHhccccchhhhhhhhcCCC-CCCCCcchhhHHHHHHHHHHHHHHHhhhH
Q psy16921        155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPS-SYRKNPFGIFNMGFTTIIIIYLFVGVIGY  215 (235)
Q Consensus       155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~-~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY  215 (235)
                      ..++..++....|+|.|-......-+|+|||+ +.+|    +...+...+.++|+...+.-.
T Consensus       186 ~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPr----Ai~~~~~iv~ilYil~~~~~~  243 (435)
T PRK10435        186 GHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPL----ATMLGTGLAGIIYIAATQVIS  243 (435)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccH----HHHHHHHHHHHHHHHHHHHHH
Confidence            44667777888999999999999999999996 4555    788999999999998876543

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=91.53  E-value=0.69  Score=43.81  Aligned_cols=55  Identities=11%  Similarity=0.100  Sum_probs=44.1

Q ss_pred             chhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhh
Q psy16921        157 EVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIG  214 (235)
Q Consensus       157 ~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~G  214 (235)
                      .+..++....|+|.|-......-+|+|||+|--+   |++..+...+.++|..+.+.-
T Consensus       192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iP---rai~~s~~i~~v~Y~l~~~~~  246 (445)
T PRK10644        192 AIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVP---IATIGGVLIAAVCYVLSSTAI  246 (445)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchh---HHHHHHHHHHHHHHHHHHHHH
Confidence            3445566788999999999999999999975332   378899999999999887653

>TIGR00911 2A0308 L-type amino acid transporter

Probab=91.31  E-value=0.78  Score=44.21  Aligned_cols=56  Identities=16%  Similarity=0.189  Sum_probs=45.9

Q ss_pred             ccchhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHhhh
Q psy16921        155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGVIG  214 (235)
Q Consensus       155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~~G  214 (235)
                      ..++..++....|+|.|-.......+|+|||+| .+|    ++..+...+.++|+...+.-
T Consensus       234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPr----Ai~~s~~~v~~~Y~l~~~a~  290 (501)
T TIGR00911       234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPI----AIIISMPIVTFIYVLTNIAY  290 (501)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHH----HHHHHHHHHHHHHHHHHHHH
Confidence            345666778889999999999999999999964 444    78899999999999886543

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=91.18  E-value=1.1  Score=42.49  Aligned_cols=55  Identities=9%  Similarity=0.204  Sum_probs=44.4

Q ss_pred             cchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhh
Q psy16921        156 YEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVI  213 (235)
Q Consensus       156 ~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~  213 (235)
                      ..+..++....|+|.|-.......+|+|||+|--   .+++..++..++++|+.....
T Consensus       195 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~i---P~Ai~~~~~i~~~~Y~l~~~~  249 (445)
T PRK11357        195 MALLAGISATSWSYTGMASICYMTGEIKNPGKTM---PRALIGSCLLVLVLYTLLALV  249 (445)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccc---hHHHHHHHHHHHHHHHHHHHH
Confidence            3455667778999999999999999999997432   237889999999999887654

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=91.06  E-value=2.3  Score=40.71  Aligned_cols=59  Identities=22%  Similarity=0.299  Sum_probs=45.6

Q ss_pred             chhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcc
Q psy16921        157 EVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYG  219 (235)
Q Consensus       157 ~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG  219 (235)
                      .+..++....|+|.|-.....+.+|.|||++.+|    +...+...++++|..+.+..+...+
T Consensus       196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~----ai~~~~~~v~~lY~l~~~~~~g~~~  254 (468)
T TIGR03810       196 QVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGK----ATVIGLIGVLAIYVLVSVLSYGIMT  254 (468)
T ss_pred             HHHHHHHHHHHHHHhHhHHhhhHhhccCcccchH----HHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            3445667788999999888888899988555554    7889999999999988876554443

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=89.98  E-value=0.81  Score=41.46  Aligned_cols=65  Identities=17%  Similarity=0.123  Sum_probs=48.7

Q ss_pred             ccchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCcc
Q psy16921        155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVE  223 (235)
Q Consensus       155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~  223 (235)
                      +.+.....-...+.|.+...+.-+...+|+|++.+|    ....+.....++|...-+.....||.+..
T Consensus       174 ~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k----~~~~~~~~~~~~~~~~~~~~i~vfG~~~~  238 (320)
T PF03845_consen  174 IKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKK----SLLIAILISGLFLLFIIFITIGVFGPELA  238 (320)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            444555555566777777777788889999877665    68888888888888888888888886543

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=89.89  E-value=1.1  Score=41.87  Aligned_cols=60  Identities=15%  Similarity=0.256  Sum_probs=48.8

Q ss_pred             chhHHHHHHHHHhccccchhhhhhhhcCCCCC-CCCcchhhHHHHHHHHHHHHHHHhhhHhhccc
Q psy16921        157 EVPLFMGTFLFASLGIGVLIALEDEMKTPSSY-RKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQ  220 (235)
Q Consensus       157 ~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~-~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~  220 (235)
                      .+...+....++|.|-....+.-+|+|||+|- +|    .+..++..+.++|....+.-....++
T Consensus       202 ~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~----aii~~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         202 GILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPR----AIILSLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccH----HHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            45667777889999999999999999999644 44    67788899999999988777666665

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=89.88  E-value=2.4  Score=40.23  Aligned_cols=54  Identities=22%  Similarity=0.212  Sum_probs=42.5

Q ss_pred             cchhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHhh
Q psy16921        156 YEVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGVI  213 (235)
Q Consensus       156 ~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~~  213 (235)
                      ..+..++....|+|.|.......-+|+|||+| .+|    +...+...+.++|+.....
T Consensus       201 ~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPr----Ai~~~~~~~~~~y~l~~~~  255 (452)
T TIGR01773       201 GAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITR----ATNSVIWRIIVFYLGSIFI  255 (452)
T ss_pred             HHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            35677788899999999999999999999974 333    5666777788888876443

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10580 proY putative proline-specific permease; Provisional

Probab=88.28  E-value=3.2  Score=39.53  Aligned_cols=52  Identities=19%  Similarity=0.234  Sum_probs=39.7

Q ss_pred             chhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHh
Q psy16921        157 EVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGV  212 (235)
Q Consensus       157 ~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~  212 (235)
                      .+..++....|+|.|-.......+|+|||+| .+|    +...+...+.++|+....
T Consensus       200 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPr----Ai~~~~~~~~~~y~~~~~  252 (457)
T PRK10580        200 GMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPR----AINSVPMRILVFYVGTLF  252 (457)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHH----HHHHHHHHHHHHHHHHHH
Confidence            4556777788999999999999999999985 343    455666667777776643

>PRK10746 putative transport protein YifK; Provisional

Probab=87.61  E-value=3.4  Score=39.62  Aligned_cols=56  Identities=13%  Similarity=0.061  Sum_probs=43.1

Q ss_pred             ccchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhh
Q psy16921        155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVI  213 (235)
Q Consensus       155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~  213 (235)
                      +..+..++....|+|.|...+...-+|+|||+|--   +++...++..+.++|+.....
T Consensus       199 ~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~i---P~Ai~~~~~~i~~~yv~~~~~  254 (461)
T PRK10746        199 WKGFLTALCIVVASYQGVELIGITAGEAKNPQVTL---RSAVGKVLWRILIFYVGAIFV  254 (461)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            44566788889999999999999999999997432   246777777778888775433

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=86.89  E-value=9.3  Score=36.50  Aligned_cols=57  Identities=11%  Similarity=0.140  Sum_probs=37.0

Q ss_pred             HHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcc
Q psy16921        160 LFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYG  219 (235)
Q Consensus       160 ~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG  219 (235)
                      .++-...|+|.|-......-+|+|||+|--.   +++..+..+..+++....+.-+...+
T Consensus       221 ~~~~~~~fsf~G~e~~~~~a~E~knP~r~iP---~Ai~~s~~i~~~~~~~~~l~~~~~~~  277 (482)
T TIGR00907       221 LGLLNPAWSMTGYDGTAHMAEEIENPEVVGP---RAIIGAVAIGIVTGFCFNIVLFFSMG  277 (482)
T ss_pred             hhhhhhHHHhcCcchhhHHHHhcCChhhhcC---HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3344466999999999999999999974322   36767776655544443333333334

>PRK10238 aromatic amino acid transporter; Provisional

Probab=86.88  E-value=3.7  Score=39.19  Aligned_cols=50  Identities=20%  Similarity=0.287  Sum_probs=38.2

Q ss_pred             chhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHH
Q psy16921        157 EVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFV  210 (235)
Q Consensus       157 ~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~  210 (235)
                      .+..+++...|+|.|-......-+|+|||+| .+|    ++..++..+.+.|+..
T Consensus       201 ~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPr----Ai~~~~~~i~~~y~~~  251 (456)
T PRK10238        201 GLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPK----ATNQVIYRILIFYIGS  251 (456)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHH----HHHHHHHHHHHHHHHH
Confidence            4446677788999999999999999999975 443    5666677777777654

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=86.47  E-value=5.2  Score=38.08  Aligned_cols=55  Identities=22%  Similarity=0.196  Sum_probs=44.3

Q ss_pred             ccchhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHhh
Q psy16921        155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGVI  213 (235)
Q Consensus       155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~~  213 (235)
                      +.++..++....|+|.|-......-+|+|||+| .+|    +...++..+.++|+...+.
T Consensus       180 ~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPr----ai~~~~~~i~i~Yil~~~~  235 (446)
T PRK10197        180 FGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVR----ATNSVIWRISIFYLCSIFV  235 (446)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHH----HHHHHHHHHHHHHHHHHHH
Confidence            346677888889999999999999999999975 333    6777888888899886554

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=86.14  E-value=1.4  Score=42.09  Aligned_cols=65  Identities=14%  Similarity=0.062  Sum_probs=50.9

Q ss_pred             ccchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCc
Q psy16921        155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLV  222 (235)
Q Consensus       155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v  222 (235)
                      +.++..++....++|.|.......-+|.|||+|--+   +....++..+.++|+.....--...|.+.
T Consensus       199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IP---ra~~~~~~~~~v~y~~~~~~~~~~~~~~~  263 (478)
T PF00324_consen  199 FSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIP---RATLLSVLRIGVFYVLTSYALTLAVPYDN  263 (478)
T ss_pred             hhHHHHhhhhhhcccccccccccccccCCCchhhhh---hHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence            456778888889999999999999999999974432   37888999999999987765555555443

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>PRK10249 phenylalanine transporter; Provisional

Probab=85.92  E-value=6  Score=37.80  Aligned_cols=56  Identities=16%  Similarity=0.180  Sum_probs=43.8

Q ss_pred             ccchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhh
Q psy16921        155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVI  213 (235)
Q Consensus       155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~  213 (235)
                      +..+..++....|+|.|-......-+|+|||+|--   ++++..+...+.++|......
T Consensus       208 ~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~i---Prai~~~~~~~~~~y~~~~~~  263 (458)
T PRK10249        208 WNGLILSLAVIMFSFGGLELIGITAAEARDPEKSI---PKAVNQVVYRILLFYIGSLVV  263 (458)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            44566778888999999999999999999997532   236778888888888775443

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=85.52  E-value=5.5  Score=38.17  Aligned_cols=57  Identities=11%  Similarity=-0.017  Sum_probs=39.7

Q ss_pred             HHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhccc
Q psy16921        161 FMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQ  220 (235)
Q Consensus       161 ~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~  220 (235)
                      ..-...|+|.|-.....+-+|+|||+|--.   |.+..+..++.++|..+-+......++
T Consensus       218 ~~~~~~~~f~G~e~~~~~aeE~knP~r~iP---rai~~s~~i~~~~~~~~~~~~~~~~~~  274 (475)
T TIGR03428       218 SGLMAAYVMVGFGSAGELSEETKNPRRVAP---RTILTALSVSALGGGLMILGALMAAPS  274 (475)
T ss_pred             HHHHHHHHhcCcchHHHHHHHhcCcchhhh---HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            344567899999999999999999975332   367778877776666555444444443

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=84.77  E-value=5.3  Score=38.91  Aligned_cols=47  Identities=17%  Similarity=0.254  Sum_probs=36.5

Q ss_pred             HHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHH
Q psy16921        161 FMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVG  211 (235)
Q Consensus       161 ~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g  211 (235)
                      .+-...|+|.|-......-+|+|||+| ++|    ++..+...+.++|....
T Consensus       199 ~~~~~~faf~G~E~~a~~a~E~knP~r~~Pr----Ai~~~~i~~~~l~~l~~  246 (507)
T TIGR00910       199 VFVAFIGAYMGVEASASHINELENPGRDYPL----AMILLMIAAICLDAIGG  246 (507)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHccCCcccccH----HHHHHHHHHHHHHHHHH
Confidence            333457899999999999999999974 555    67788888888887543

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=83.73  E-value=7.2  Score=37.18  Aligned_cols=54  Identities=17%  Similarity=0.113  Sum_probs=42.9

Q ss_pred             cchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy16921        156 YEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGV  212 (235)
Q Consensus       156 ~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~  212 (235)
                      .++..++....|+|.|-.....+-+|+|||+|--   ++++..+...+.++|....+
T Consensus       197 ~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~i---Prai~~~~~~~~~~Y~l~~~  250 (478)
T TIGR00913       197 KGVCSVFVTAAFSFGGTELVALTAGEAANPRKSI---PRAAKRTFWRILVFYILTLF  250 (478)
T ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHH---HHHHHHHHHHHHHHHHHHHH
Confidence            4456667778899999999999999999997422   23788888899999998654

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=82.07  E-value=6.9  Score=37.33  Aligned_cols=40  Identities=8%  Similarity=-0.066  Sum_probs=35.4

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCC
Q psy16921          2 DSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSP   41 (235)
Q Consensus         2 ~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~   41 (235)
                      |.+|..+..+...+..+|-+.+=....++.+.++++...+
T Consensus        87 G~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~  126 (442)
T TIGR00800        87 GIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFP  126 (442)
T ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Confidence            7788899999999999999999999999999999888653

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 34/219 (15%), Positives = 62/219 (28%), Gaps = 64/219 (29%)

Query: 10  DFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHF 69
           DF IFW +L  C      + +   +  +   P+ +    H   I   +  +  +++ L  
Sbjct: 181 DFKIFWLNLKNCNS-PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 70  LSPFSSIESLI---NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLT-- 124
             P+     L+   N ++                   +FN          L C ILLT  
Sbjct: 240 SKPYE--NCLLVLLNVQNA---------KAWN-----AFN----------LSCKILLTTR 273

Query: 125 ------IGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEV-------------PLFMGTF 165
                         +I  D     +       L  K  +              P  +   
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-- 331

Query: 166 LFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTII 204
           + A         + D + T  +++     +     TTII
Sbjct: 332 IIAES-------IRDGLATWDNWKH----VNCDKLTTII 359

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 36/197 (18%), Positives = 64/197 (32%), Gaps = 45/197 (22%)

Query: 37  HHFSPDTSLAKIHWELIITVVMIVLNQVKNLHF-------LSPFSS--IESLINQRSKAG 87
           HH   +T   +  ++ I++V       V N           S  S   I+ +I  +    
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAF--VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62

Query: 88  TKVHSFSNLIKGVGSPSFNSESLIKRF--RLLKCN---ILLTI-------GLGMVCYYIF 135
             +  F  L+          E ++++F   +L+ N   ++  I        +    Y   
Sbjct: 63  GTLRLFWTLLS-------KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 136 RDGL--DQPILRPGDV-------ELFGKLYEVPLFMGTFLFASLGIG--VLIALEDEMKT 184
           RD L  D  +    +V       +L   L E+       +   LG G   +    D   +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL--DVCLS 173

Query: 185 PSSYRKNPFGIF--NMG 199
                K  F IF  N+ 
Sbjct: 174 YKVQCKMDFKIFWLNLK 190

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 7e-04
 Identities = 39/210 (18%), Positives = 71/210 (33%), Gaps = 62/210 (29%)

Query: 39  FSPD----TSLAKIHW-ELIITVVMIVLNQVKNLHFLSPFSSIESLINQRSKAGT-KVHS 92
           F P     T L  + W ++I + VM+V+N++             SL+ ++ K  T  + S
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY----------SLVEKQPKESTISIPS 430

Query: 93  --FSNLIKGVGSPSFNSESLIKRFRLLKC----NILLTIGLGMVCYYIFRDG--LDQPIL 144
                 +K     + +  S++  + + K     +++          +I   G  L   I 
Sbjct: 431 IYLELKVKLENEYALH-RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI---GHHLKN-IE 485

Query: 145 RPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTII 204
            P  + LF  ++   L    F F          LE +++  S+       I N       
Sbjct: 486 HPERMTLFRMVF---L---DFRF----------LEQKIRHDSTAWNASGSILN------- 522

Query: 205 IIYLFVGVIGYYKYGQLVEGSITLNIPKDD 234
                  +  Y  Y       I  N PK +
Sbjct: 523 ---TLQQLKFYKPY-------ICDNDPKYE 542

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	96.55
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	94.65
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	94.41

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=96.55  E-value=0.0016  Score=59.11  Aligned_cols=63  Identities=10%  Similarity=0.048  Sum_probs=50.0

Q ss_pred             ccchhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccC
Q psy16921        155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQL  221 (235)
Q Consensus       155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~  221 (235)
                      +..+..++....|+|.|........+|+|||+| .+|    ....+...++++|+...+......+.+
T Consensus       190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~----a~~~~~~~~~~~y~~~~~~~~~~~~~~  253 (445)
T 3l1l_A          190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI----ATIGGVLIAAVCYVLSTTAIMGMIPNA  253 (445)
T ss_dssp             ---HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccH----HHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            456677888899999999999999999999953 444    788999999999999888766666543

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=94.65  E-value=0.099  Score=48.08  Aligned_cols=59  Identities=12%  Similarity=0.064  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccC
Q psy16921        160 LFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQL  221 (235)
Q Consensus       160 ~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~  221 (235)
                      .++....|+|.|........+|+|||+|--   ++++..++..++++|+...+.-....+++
T Consensus       205 ~~~~~~~~a~~G~e~~~~~a~E~k~P~k~i---p~ai~~~~~~~~~~y~~~~~~~~~~~~~~  263 (511)
T 4djk_A          205 VVFVAFILSYMGVEASATHVNEMSNPGRDY---PLAMLLLMVAAICLSSVGGLSIAMVIPGN  263 (511)
T ss_dssp             TTHHHHHHHHTTGGGGTGGGSSSSCCTTTH---HHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhccCcccch---hHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence            456678899999999999999999997532   23788999999999999888766666654

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=94.41  E-value=0.013  Score=53.12  Aligned_cols=60  Identities=12%  Similarity=0.308  Sum_probs=47.9

Q ss_pred             cchhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHhhhHhhcc
Q psy16921        156 YEVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYG  219 (235)
Q Consensus       156 ~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG  219 (235)
                      ..+..++....|+|.|........+|+|||+| .+|    .+..+...+.++|....+......+
T Consensus       188 ~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~----ai~~~~~~~~~~y~~~~~~~~~~~~  248 (444)
T 3gia_A          188 SGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPR----AIFISILIVMFVYVGVAISAIGNLP  248 (444)
T ss_dssp             HHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhH----HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            45566777778999999999999999999974 444    6889999999999988776554444

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00