Psyllid ID: psy16982

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110------
Protein Sequence
MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHcHHHccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mmsevdmpVRQAGVVYLKNLITnqwvekevdpgtplafSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNivkhdfpgkwtQIVDKVSIylqnpdatpwFGALLCLYQLVKNY
Flexible Loop (DISEMBL)
MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY
Low Complexity Region (SEG)
MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY
Disordered region (IsUnstruct)
*********RQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLV***
Disordered Region (DISOPRED)
***EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY
Disordered Region (DISEMBL)
MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY
Disordered Region (DISPRO)
***EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	116	2.2.26 [Sep-21-2011]
Q9EPL8	1038	Importin-7 OS=Mus musculu	yes	N/A	1.0	0.111	0.525	2e-35
O95373	1038	Importin-7 OS=Homo sapien	yes	N/A	1.0	0.111	0.525	3e-35
Q7TMY7	1010	Importin-8 OS=Mus musculu	no	N/A	0.965	0.110	0.495	6e-32
O15397	1037	Importin-8 OS=Homo sapien	no	N/A	0.965	0.108	0.495	1e-31
Q9XZU1	975	Exportin-2 OS=Drosophila	no	N/A	0.956	0.113	0.324	6e-10
O59809	1029	Probable importin c550.11	yes	N/A	0.948	0.106	0.283	1e-09
Q55CX9	1065	Probable importin-7 homol	yes	N/A	0.931	0.101	0.254	1e-07
P33307	960	Importin alpha re-exporte	yes	N/A	0.948	0.114	0.237	4e-06
Q9PTU3	971	Exportin-2 OS=Pagrus majo	N/A	N/A	0.913	0.109	0.279	1e-05
Q7SZC2	971	Exportin-2 OS=Danio rerio	no	N/A	0.887	0.106	0.287	2e-05

>sp|Q9EPL8|IPO7_MOUSE Importin-7 OS=Mus musculus GN=Ipo7 PE=1 SV=2

 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 61/116 (52%), Positives = 88/116 (75%)

Query: 1   MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
           M  ++D+PVRQAGV+YLKN+IT  W ++E  PG    +++ E+D+  IR+ IV+A++ +P
Sbjct: 44  MSEQLDLPVRQAGVIYLKNMITQYWPDREATPGDIAPYTIPEEDRHCIRENIVEAIIHSP 103

Query: 61  EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           E+IRVQL  C+ +I+KHD+P +WT IVDK+  YLQ+ ++  W G LLCLYQLVKNY
Sbjct: 104 ELIRVQLTTCIHHIIKHDYPSRWTAIVDKIGFYLQSDNSACWLGILLCLYQLVKNY 159

Functions in nuclear protein import, either by acting as autonomous nuclear transport receptor or as an adapter-like protein in association with the importin-beta subunit KPNB1. Acting autonomously is thought to serve itself as receptor for nuclear localization signals (NLS) and to promote translocation of import substrates through the nuclear pore complex (NPC) by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. Mediates autonomously the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A. In association with KPNB1 mediates the nuclear import of H1 histone and the Ran-binding site of IPO7 is not required but synergizes with that of KPNB1 in importin/substrate complex dissociation (By similarity). In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones.
Mus musculus (taxid: 10090)

>sp|O95373|IPO7_HUMAN Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1

 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 61/116 (52%), Positives = 88/116 (75%)

Query: 1   MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
           M  ++D+PVRQAGV+YLKN+IT  W ++E  PG    +++ E+D+  IR+ IV+A++ +P
Sbjct: 44  MSEQLDLPVRQAGVIYLKNMITQYWPDRETAPGDISPYTIPEEDRHCIRENIVEAIIHSP 103

Query: 61  EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           E+IRVQL  C+ +I+KHD+P +WT IVDK+  YLQ+ ++  W G LLCLYQLVKNY
Sbjct: 104 ELIRVQLTTCIHHIIKHDYPSRWTAIVDKIGFYLQSDNSACWLGILLCLYQLVKNY 159

Functions in nuclear protein import, either by acting as autonomous nuclear transport receptor or as an adapter-like protein in association with the importin-beta subunit KPNB1. Acting autonomously, is thought to serve itself as receptor for nuclear localization signals (NLS) and to promote translocation of import substrates through the nuclear pore complex (NPC) by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Mediates autonomously the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A. In association with KPNB1 mediates the nuclear import of H1 histone and the Ran-binding site of IPO7 is not required but synergizes with that of KPNB1 in importin/substrate complex dissociation. In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones. In vitro, mediates the nuclear import of HIV-1 reverse transcription complex (RTC) integrase. In case of HIV-1 infection, binds and mediates the nuclear import of HIV-1 Rev.

Homo sapiens (taxid: 9606)

>sp|Q7TMY7|IPO8_MOUSE Importin-8 OS=Mus musculus GN=Ipo8 PE=2 SV=3

 Score =  135 bits (341), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 83/113 (73%), Gaps = 1/113 (0%)

Query: 5   VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPL-AFSLHEQDKAMIRDAIVDAVVMAPEVI 63
           V+ PVRQA  +YLKN++T  W ++E  PG  +  F++HE D+  IRD IV+ ++ +P+++
Sbjct: 48  VEFPVRQAAAIYLKNMVTQYWPDREPPPGEVIFPFNIHENDRQQIRDNIVEGIIRSPDLV 107

Query: 64  RVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           RVQL +C+  I++HDFPG W  +VDK+  YLQ+P++  W G+LLCLYQLVK Y
Sbjct: 108 RVQLTMCLRVIIRHDFPGHWPAVVDKIDYYLQSPNSGSWLGSLLCLYQLVKTY 160

Seems to function in nuclear protein import, either by acting as autonomous nuclear transport receptor or as an adapter-like protein in association with the importin-beta subunit KPNB1. Acting autonomously, is thought to serve itself as receptor for nuclear localization signals (NLS) and to promote translocation of import substrates through the nuclear pore complex (NPC) by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. In vitro mediates the nuclear import of SRP19.

Mus musculus (taxid: 10090)

>sp|O15397|IPO8_HUMAN Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=2

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 81/113 (71%), Gaps = 1/113 (0%)

Query: 5   VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPL-AFSLHEQDKAMIRDAIVDAVVMAPEVI 63
           V+ PVRQA  +YLKN++T  W ++E  PG  +  F++HE D+  IRD IV+ ++ +P+++
Sbjct: 48  VEFPVRQAAAIYLKNMVTQYWPDREPPPGEAIFPFNIHENDRQQIRDNIVEGIIRSPDLV 107

Query: 64  RVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           RVQL +C+  I+KHDFPG W  +VDK+  YLQ+  +  W G+LLCLYQLVK Y
Sbjct: 108 RVQLTMCLRAIIKHDFPGHWPGVVDKIDYYLQSQSSASWLGSLLCLYQLVKTY 160

Seems to function in nuclear protein import, either by acting as autonomous nuclear transport receptor or as an adapter-like protein in association with the importin-beta subunit KPNB1. Acting autonomously, is thought to serve itself as receptor for nuclear localization signals (NLS) and to promote translocation of import substrates through the nuclear pore complex (NPC) by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. In vitro mediates the nuclear import of SRP19.

Homo sapiens (taxid: 9606)

>sp|Q9XZU1|XPO2_DROME Exportin-2 OS=Drosophila melanogaster GN=Cas PE=2 SV=2

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 3/114 (2%)

Query: 3   SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEV 62
           +++DM  R AG +  KN I   W    +D   P    +HE D+  I+  IV  ++ +P  
Sbjct: 53  AQMDMTTRVAGAIAFKNYIKRNWA-AHLDSDGPD--RIHESDRNTIKTLIVTLMLHSPVA 109

Query: 63  IRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           ++ QL+  VS I K+DFP KW Q++D++     + D     G L   + L K Y
Sbjct: 110 LQKQLSDAVSIIGKYDFPKKWPQLIDEMVERFASGDFNVINGVLQTAHSLFKRY 163

Export receptor for importin alpha. Mediates importin-alpha re-export from the nucleus to the cytoplasm after import substrates have been released into the nucleoplasm.

Drosophila melanogaster (taxid: 7227)

>sp|O59809|IMA3_SCHPO Probable importin c550.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.11 PE=3 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 3/113 (2%)

Query: 4   EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVI 63
           E+ +P +QA V+YLKN ++  W   + D  +PL   + E+ KA+ R  I+  ++ +P   
Sbjct: 46  EISLPTQQAAVIYLKNRVSRSWSSID-DAPSPL--DIPEEQKALFRQNILPVLLQSPMST 102

Query: 64  RVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           R  L   ++ I+  DFP  W    +  S  + + +    +  L+C ++L K Y
Sbjct: 103 RSHLMAILNIILSTDFPEYWPGFSEYTSNLVHSTERCEVYAGLICFHELAKVY 155

Active in protein import into the nucleus.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q55CX9|IPO7_DICDI Probable importin-7 homolog OS=Dictyostelium discoideum GN=DDB_G0269860 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 6/114 (5%)

Query: 3   SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEV 62
           +EVD+ +RQ   ++LKN+I  +W   E +  +P+     ++D   I++ ++D +V +  +
Sbjct: 49  NEVDISIRQGVSIFLKNMIITKWRGAEDE--SPIT----QEDAEFIKENLIDLLVHSHHL 102

Query: 63  IRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           ++ Q+   +  I   DFP KWT ++ K   Y+   D       L  +   +K +
Sbjct: 103 VQNQIEAMIEIIANRDFPEKWTSLLPKSIQYINTQDVKLILAGLTSIQLGIKRF 156

May function in nuclear protein import.

Dictyostelium discoideum (taxid: 44689)

>sp|P33307|CSE1_YEAST Importin alpha re-exporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CSE1 PE=1 SV=2

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 8/118 (6%)

Query: 1   MMSEVDMPV--RQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVM 58
           +++  ++P+  R AG ++ KN I  +WV++  +   P        +  +I+  IV  ++ 
Sbjct: 43  VIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLP------ANNVELIKKEIVPLMIS 96

Query: 59  APEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
            P  ++VQ+   +S+I   DFP +W  ++  ++  L N D     G L   + + K +
Sbjct: 97  LPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154

Export receptor for importin alpha (SRP1). Mediates importin-alpha re-export from the nucleus to the cytoplasm after import substrates have been released into the nucleoplasm.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9PTU3|XPO2_PAGMA Exportin-2 OS=Pagrus major GN=cse1l PE=2 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 6   DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRV 65
           D  +R    V  KN I   W   E +P       + + D+  I+  IV+ ++ +PE I+ 
Sbjct: 55  DNVIRVCAAVTFKNYIKRNWRVIEDEPN-----KVSDPDRTAIKANIVNLMLSSPEQIQK 109

Query: 66  QLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           QL+  +S I + DFP KW  ++ ++    ++ D     G L   + L K Y
Sbjct: 110 QLSDAISIIGREDFPQKWPDLLTEMVTRFRSGDFHIINGVLRTAHSLFKRY 160

Export receptor for importin alpha. Mediates importin-alpha re-export from the nucleus to the cytoplasm after import substrates have been released into the nucleoplasm.

Pagrus major (taxid: 143350)

>sp|Q7SZC2|XPO2_DANRE Exportin-2 OS=Danio rerio GN=cse1l PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 5/108 (4%)

Query: 9   VRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLA 68
           +R    V  KN I   W   E +P       + + D+  I+  IV+ ++ +PE I+ QL+
Sbjct: 58  IRVCSAVTFKNYIKRNWRIVEDEPN-----KISDPDRTAIKANIVNLMLTSPEQIQKQLS 112

Query: 69  VCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
             +S I + DFP KW  ++ ++    Q+ D     G L   + L K Y
Sbjct: 113 DAISIIGREDFPLKWPDLLTEMVNRFQSGDFHIINGVLRTAHSLFKRY 160

Export receptor for importin alpha. Mediates importin-alpha re-export from the nucleus to the cytoplasm after import substrates have been released into the nucleoplasm.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
307186404	1062	Importin-7 [Camponotus floridanus]	0.991	0.108	0.733	4e-45
91078256	1044	PREDICTED: similar to importin-7 [Tribol	1.0	0.111	0.672	2e-44
332021582	1059	Importin-7 [Acromyrmex echinatior]	0.991	0.108	0.735	5e-44
170030978	1042	importin-7 [Culex quinquefasciatus] gi|1	1.0	0.111	0.655	3e-43
242023915	994	Importin-7, putative [Pediculus humanus	1.0	0.116	0.663	8e-43
345496691	603	PREDICTED: importin-7-like, partial [Nas	0.991	0.190	0.681	4e-42
241063678	1035	Ran-binding protein, putative [Ixodes sc	1.0	0.112	0.677	8e-42
380026689	1057	PREDICTED: importin-7 [Apis florea]	0.991	0.108	0.681	4e-41
110767987	1028	PREDICTED: importin-7-like, partial [Api	0.991	0.111	0.681	4e-41
350412904	1057	PREDICTED: importin-7-like [Bombus impat	0.991	0.108	0.672	2e-40

>gi|307186404|gb|EFN72038.1| Importin-7 [Camponotus floridanus]

 Score =  184 bits (468), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 88/120 (73%), Positives = 104/120 (86%), Gaps = 5/120 (4%)

Query: 1   MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
           M +EVD+PVRQAGV+YLKNLIT+ W +KE D G P+ FS+HEQD+AMIRDAIVDAVV AP
Sbjct: 44  MSNEVDVPVRQAGVIYLKNLITSNWADKEADSG-PIEFSIHEQDRAMIRDAIVDAVVHAP 102

Query: 61  EVIR----VQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           E+IR    VQLAVC+SNIVK+DFPG+WTQIVDK++IYLQNPDA+ W G LL LYQLVKN+
Sbjct: 103 EIIRQVIIVQLAVCISNIVKYDFPGRWTQIVDKITIYLQNPDASCWPGVLLALYQLVKNF 162

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078256|ref|XP_970842.1| PREDICTED: similar to importin-7 [Tribolium castaneum] gi|270003922|gb|EFA00370.1| hypothetical protein TcasGA2_TC003212 [Tribolium castaneum]

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 78/116 (67%), Positives = 99/116 (85%)

Query: 1   MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
           MM++ DMPVRQAG +YLKNLI+  W ++EV+ G PL F++HEQD+A+IRD+IVDAVV AP
Sbjct: 44  MMADCDMPVRQAGAIYLKNLISQSWQDREVEGGQPLPFAIHEQDRALIRDSIVDAVVHAP 103

Query: 61  EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           ++IR QL  CV N+VKHDFPG+WTQIVDK+SIYL NPD + W G+LLCLY+LVKN+
Sbjct: 104 DLIRTQLCTCVHNMVKHDFPGRWTQIVDKISIYLSNPDPSGWHGSLLCLYELVKNF 159

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021582|gb|EGI61947.1| Importin-7 [Acromyrmex echinatior]

 Score =  181 bits (459), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 86/117 (73%), Positives = 103/117 (88%), Gaps = 2/117 (1%)

Query: 1   MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
           M +EVDMPVRQAGV+YLKNLIT+ W +KEV+ G P+ FS+HEQD+AMIRDAIVDAVV AP
Sbjct: 44  MSNEVDMPVRQAGVIYLKNLITSHWADKEVESG-PIEFSIHEQDRAMIRDAIVDAVVHAP 102

Query: 61  EVIR-VQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           ++IR +QLAVC+SNIVK+DFPG+WTQIVDK++IYLQNPDA  W G LL L QLVKN+
Sbjct: 103 DLIRQIQLAVCISNIVKYDFPGRWTQIVDKITIYLQNPDAACWPGVLLALQQLVKNF 159

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170030978|ref|XP_001843364.1| importin-7 [Culex quinquefasciatus] gi|167868844|gb|EDS32227.1| importin-7 [Culex quinquefasciatus]

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 100/116 (86%)

Query: 1   MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
           M ++V+ PVRQAG +YLKNLIT+ W ++E + G P+ FS+HEQD+AMIRD+IV+A+V AP
Sbjct: 44  MQNDVENPVRQAGAIYLKNLITSSWQDREAEAGNPIPFSIHEQDRAMIRDSIVEAIVHAP 103

Query: 61  EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           ++IRVQL VC++NI+K+DFPG+WTQ+VDK+SIYLQN D   W GALLC+YQLVKNY
Sbjct: 104 DIIRVQLCVCINNIIKNDFPGRWTQVVDKISIYLQNRDINGWNGALLCMYQLVKNY 159

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023915|ref|XP_002432376.1| Importin-7, putative [Pediculus humanus corporis] gi|212517799|gb|EEB19638.1| Importin-7, putative [Pediculus humanus corporis]

 Score =  177 bits (449), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 77/116 (66%), Positives = 99/116 (85%)

Query: 1   MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
           M+++VDMPVRQA  +YLK  I + W  KEV+PG P+ +++HEQD+AMIRDAIVDA+V AP
Sbjct: 1   MINDVDMPVRQAAAIYLKREIESHWGGKEVEPGQPIPYTIHEQDRAMIRDAIVDAIVCAP 60

Query: 61  EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           +++RVQL  C+S I+K+DFP KWT IVDK+SIYLQNP+A+ WFGALLCLYQLVKN+
Sbjct: 61  DLVRVQLTQCLSTIIKYDFPAKWTLIVDKISIYLQNPNASGWFGALLCLYQLVKNF 116

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496691|ref|XP_001602555.2| PREDICTED: importin-7-like, partial [Nasonia vitripennis]

 Score =  175 bits (443), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 79/116 (68%), Positives = 97/116 (83%), Gaps = 1/116 (0%)

Query: 1   MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
           M ++VDMPVRQAGV+YLKN I   W +KE + G  + FS+HEQD+AMIRDAIVDA V AP
Sbjct: 44  MSNDVDMPVRQAGVIYLKNFIVTNWADKEAENGV-VPFSIHEQDRAMIRDAIVDATVHAP 102

Query: 61  EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           E+IR+QL VC++NIV+HDFPG+WTQIVDK++IYLQNPDA+ W G LL LYQ VKN+
Sbjct: 103 ELIRLQLGVCITNIVRHDFPGRWTQIVDKITIYLQNPDASCWPGVLLALYQFVKNF 158

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241063678|ref|XP_002408201.1| Ran-binding protein, putative [Ixodes scapularis] gi|215492403|gb|EEC02044.1| Ran-binding protein, putative [Ixodes scapularis]

 Score =  174 bits (440), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 80/118 (67%), Positives = 98/118 (83%), Gaps = 2/118 (1%)

Query: 1   MMSEVDMPVRQAGVVYLKNLITNQWVEKEVD--PGTPLAFSLHEQDKAMIRDAIVDAVVM 58
           M + +DMPVRQAG +YLKNL+T  W EKE    P  PL F +HEQD+AM+RDAIVDA+V 
Sbjct: 44  MTNGLDMPVRQAGAIYLKNLVTQFWQEKEAPQPPTAPLHFHVHEQDRAMVRDAIVDAMVH 103

Query: 59  APEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           AP++IRVQLAVC++NI+KHDFPG+WT IVDKVSIYLQ+P++  W G+LL LYQLVKNY
Sbjct: 104 APDLIRVQLAVCLTNILKHDFPGRWTGIVDKVSIYLQSPESAGWMGSLLALYQLVKNY 161

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026689|ref|XP_003697077.1| PREDICTED: importin-7 [Apis florea]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 79/116 (68%), Positives = 100/116 (86%), Gaps = 1/116 (0%)

Query: 1   MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
           +M+  +M VRQAGV+YLKNLIT  W ++E + G+ + F++HEQD+AMIRDAIVDA+V AP
Sbjct: 43  LMTAEEMSVRQAGVIYLKNLITTNWADRENENGS-VKFTIHEQDRAMIRDAIVDALVHAP 101

Query: 61  EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           E+IRVQLAVCV+NIVKHDFPG+WTQIVDK++IYLQN DA+ W G LL L+QLVKN+
Sbjct: 102 ELIRVQLAVCVNNIVKHDFPGRWTQIVDKITIYLQNSDASCWPGVLLALHQLVKNF 157

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110767987|ref|XP_624116.2| PREDICTED: importin-7-like, partial [Apis mellifera]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 79/116 (68%), Positives = 100/116 (86%), Gaps = 1/116 (0%)

Query: 1   MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
           +M+  +M VRQAGV+YLKNLIT  W ++E + G+ + F++HEQD+AMIRDAIVDA+V AP
Sbjct: 15  LMTAEEMSVRQAGVIYLKNLITTNWADRENENGS-VKFTIHEQDRAMIRDAIVDALVHAP 73

Query: 61  EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           E+IRVQLAVCV+NIVKHDFPG+WTQIVDK++IYLQN DA+ W G LL L+QLVKN+
Sbjct: 74  ELIRVQLAVCVNNIVKHDFPGRWTQIVDKITIYLQNSDASCWPGVLLALHQLVKNF 129

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412904|ref|XP_003489809.1| PREDICTED: importin-7-like [Bombus impatiens]

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/116 (67%), Positives = 98/116 (84%), Gaps = 1/116 (0%)

Query: 1   MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
           +M+  +M VRQAGV+YLKNLI   W ++E + G+ + F++HEQD+AMIRDAIVDA+V AP
Sbjct: 43  LMTAEEMSVRQAGVIYLKNLIATNWADREDENGS-VKFTIHEQDRAMIRDAIVDALVHAP 101

Query: 61  EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           E+IRVQL VCVSNIVKHDFPG+WTQIVDK++IYLQN DA+ W G LL L+QLVKN+
Sbjct: 102 ELIRVQLGVCVSNIVKHDFPGRWTQIVDKITIYLQNSDASCWPGVLLALHQLVKNF 157

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
FB|FBgn0026252	1049	msk "moleskin" [Drosophila mel	1.0	0.110	0.637	3.9e-37
MGI|MGI:2152414	1038	Ipo7 "importin 7" [Mus musculu	1.0	0.111	0.525	2.5e-32
RGD|1310849	1038	Ipo7 "importin 7" [Rattus norv	1.0	0.111	0.525	3.2e-32
UNIPROTKB|I3LDM3	1010	IPO7 "Uncharacterized protein"	1.0	0.114	0.525	3.9e-32
UNIPROTKB|E1BGE5	1038	IPO7 "Uncharacterized protein"	1.0	0.111	0.525	4.1e-32
UNIPROTKB|E2R2C4	1038	IPO7 "Uncharacterized protein"	1.0	0.111	0.525	4.1e-32
UNIPROTKB|F6X4J2	1038	IPO7 "Uncharacterized protein"	1.0	0.111	0.525	4.1e-32
UNIPROTKB|O95373	1038	IPO7 "Importin-7" [Homo sapien	1.0	0.111	0.525	4.1e-32
UNIPROTKB|F1NBA8	1009	IPO7 "Uncharacterized protein"	1.0	0.114	0.517	8.2e-32
UNIPROTKB|O42480	1038	ipo7 "RanBP7" [Xenopus laevis	1.0	0.111	0.508	6.2e-31

FB|FBgn0026252 msk "moleskin" [Drosophila melanogaster (taxid:7227)]

 Score = 410 (149.4 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 74/116 (63%), Positives = 92/116 (79%)

Query:     1 MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
             M + V+ PVRQAG VYLKNLI + W + E  PG P+ FS+HEQD+AMIR AIVDA+V AP
Sbjct:    46 MQTTVEQPVRQAGAVYLKNLINSSWSDHEAKPGEPIPFSIHEQDRAMIRGAIVDAIVHAP 105

Query:    61 EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
             E+IRVQL+VCV++I+K DFPG+W Q+VD +SIYLQN D   W GAL+ +YQLVK Y
Sbjct:   106 ELIRVQLSVCVNHIIKSDFPGRWPQVVDSISIYLQNQDVNGWNGALVTMYQLVKTY 161

GO:0006606 "protein import into nucleus" evidence=ISS;IDA;TAS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0005643 "nuclear pore" evidence=IEA;ISS

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=IPI

GO:0005938 "cell cortex" evidence=IDA

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=IGI

GO:0005634 "nucleus" evidence=IDA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0035311 "wing cell fate specification" evidence=IMP

GO:0007474 "imaginal disc-derived wing vein specification" evidence=IMP

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0000189 "MAPK import into nucleus" evidence=IMP

GO:0016318 "ommatidial rotation" evidence=IMP

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0042052 "rhabdomere development" evidence=IMP

GO:0048749 "compound eye development" evidence=IGI;IMP

GO:0042675 "compound eye cone cell differentiation" evidence=IMP

GO:0045465 "R8 cell differentiation" evidence=IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0046331 "lateral inhibition" evidence=IMP

MGI|MGI:2152414 Ipo7 "importin 7" [Mus musculus (taxid:10090)]

 Score = 365 (133.5 bits), Expect = 2.5e-32, P = 2.5e-32
 Identities = 61/116 (52%), Positives = 88/116 (75%)

Query:     1 MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
             M  ++D+PVRQAGV+YLKN+IT  W ++E  PG    +++ E+D+  IR+ IV+A++ +P
Sbjct:    44 MSEQLDLPVRQAGVIYLKNMITQYWPDREATPGDIAPYTIPEEDRHCIRENIVEAIIHSP 103

Query:    61 EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
             E+IRVQL  C+ +I+KHD+P +WT IVDK+  YLQ+ ++  W G LLCLYQLVKNY
Sbjct:   104 ELIRVQLTTCIHHIIKHDYPSRWTAIVDKIGFYLQSDNSACWLGILLCLYQLVKNY 159

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0042393 "histone binding" evidence=IDA

RGD|1310849 Ipo7 "importin 7" [Rattus norvegicus (taxid:10116)]

 Score = 364 (133.2 bits), Expect = 3.2e-32, P = 3.2e-32
 Identities = 61/116 (52%), Positives = 88/116 (75%)

Query:     1 MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
             M  ++D+PVRQAGV+YLKN+IT  W ++E  PG    +++ E+D+  IR+ IV+A++ +P
Sbjct:    44 MSEQLDLPVRQAGVIYLKNMITQYWPDREATPGDISPYTIPEEDRHCIRENIVEAIIHSP 103

Query:    61 EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
             E+IRVQL  C+ +I+KHD+P +WT IVDK+  YLQ+ ++  W G LLCLYQLVKNY
Sbjct:   104 ELIRVQLTTCIHHIIKHDYPSRWTAIVDKIGFYLQSDNSACWLGILLCLYQLVKNY 159

GO:0005643 "nuclear pore" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0006606 "protein import into nucleus" evidence=IEA;ISO

GO:0008565 "protein transporter activity" evidence=IEA

GO:0042393 "histone binding" evidence=IEA;ISO

UNIPROTKB|I3LDM3 IPO7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 363 (132.8 bits), Expect = 3.9e-32, P = 3.9e-32
 Identities = 61/116 (52%), Positives = 88/116 (75%)

Query:     1 MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
             M  ++D+PVRQAGV+YLKN+IT  W ++E  PG    +++ E+D+  IR+ IV+A++ +P
Sbjct:    16 MSEQLDLPVRQAGVIYLKNMITQYWPDREAAPGDISPYTIPEEDRHCIRENIVEAIIHSP 75

Query:    61 EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
             E+IRVQL  C+ +I+KHD+P +WT IVDK+  YLQ+ ++  W G LLCLYQLVKNY
Sbjct:    76 ELIRVQLTTCIHHIIKHDYPSRWTAIVDKIGFYLQSDNSACWLGILLCLYQLVKNY 131

GO:0042393 "histone binding" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|E1BGE5 IPO7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 363 (132.8 bits), Expect = 4.1e-32, P = 4.1e-32
 Identities = 61/116 (52%), Positives = 88/116 (75%)

Query:     1 MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
             M  ++D+PVRQAGV+YLKN+IT  W ++E  PG    +++ E+D+  IR+ IV+A++ +P
Sbjct:    44 MSEQLDLPVRQAGVIYLKNMITQYWPDRETAPGDISPYTIPEEDRHCIRENIVEAIIHSP 103

Query:    61 EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
             E+IRVQL  C+ +I+KHD+P +WT IVDK+  YLQ+ ++  W G LLCLYQLVKNY
Sbjct:   104 ELIRVQLTTCIHHIIKHDYPSRWTAIVDKIGFYLQSDNSACWLGILLCLYQLVKNY 159

GO:0042393 "histone binding" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|E2R2C4 IPO7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 363 (132.8 bits), Expect = 4.1e-32, P = 4.1e-32
 Identities = 61/116 (52%), Positives = 88/116 (75%)

Query:     1 MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
             M  ++D+PVRQAGV+YLKN+IT  W ++E  PG    +++ E+D+  IR+ IV+A++ +P
Sbjct:    44 MSEQLDLPVRQAGVIYLKNMITQYWPDRETAPGDISPYTIPEEDRHCIRENIVEAIIHSP 103

Query:    61 EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
             E+IRVQL  C+ +I+KHD+P +WT IVDK+  YLQ+ ++  W G LLCLYQLVKNY
Sbjct:   104 ELIRVQLTTCIHHIIKHDYPSRWTAIVDKIGFYLQSDNSACWLGILLCLYQLVKNY 159

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|F6X4J2 IPO7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 363 (132.8 bits), Expect = 4.1e-32, P = 4.1e-32
 Identities = 61/116 (52%), Positives = 88/116 (75%)

Query:     1 MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
             M  ++D+PVRQAGV+YLKN+IT  W ++E  PG    +++ E+D+  IR+ IV+A++ +P
Sbjct:    44 MSEQLDLPVRQAGVIYLKNMITQYWPDRETAPGDISPYTIPEEDRHCIRENIVEAIIHSP 103

Query:    61 EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
             E+IRVQL  C+ +I+KHD+P +WT IVDK+  YLQ+ ++  W G LLCLYQLVKNY
Sbjct:   104 ELIRVQLTTCIHHIIKHDYPSRWTAIVDKIGFYLQSDNSACWLGILLCLYQLVKNY 159

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|O95373 IPO7 "Importin-7" [Homo sapiens (taxid:9606)]

 Score = 363 (132.8 bits), Expect = 4.1e-32, P = 4.1e-32
 Identities = 61/116 (52%), Positives = 88/116 (75%)

Query:     1 MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
             M  ++D+PVRQAGV+YLKN+IT  W ++E  PG    +++ E+D+  IR+ IV+A++ +P
Sbjct:    44 MSEQLDLPVRQAGVIYLKNMITQYWPDRETAPGDISPYTIPEEDRHCIRENIVEAIIHSP 103

Query:    61 EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
             E+IRVQL  C+ +I+KHD+P +WT IVDK+  YLQ+ ++  W G LLCLYQLVKNY
Sbjct:   104 ELIRVQLTTCIHHIIKHDYPSRWTAIVDKIGFYLQSDNSACWLGILLCLYQLVKNY 159

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0005083 "small GTPase regulator activity" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005215 "transporter activity" evidence=TAS

GO:0008536 "Ran GTPase binding" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|F1NBA8 IPO7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 360 (131.8 bits), Expect = 8.2e-32, P = 8.2e-32
 Identities = 60/116 (51%), Positives = 88/116 (75%)

Query:     1 MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
             M  ++D+PVRQAGV+YLKN+IT  W ++E  PG    +S+ E+D+  IR+ IV+A++ +P
Sbjct:    15 MSEQLDLPVRQAGVIYLKNMITQYWPDRETAPGEIPPYSIPEEDRHCIRENIVEAIIHSP 74

Query:    61 EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
             E+IRVQL  C+ +I+KHD+P +WT +V+K+  YLQ+ ++  W G LLCLYQLVKNY
Sbjct:    75 ELIRVQLTTCIHHIIKHDYPSRWTAVVEKIGFYLQSDNSACWLGILLCLYQLVKNY 130

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

UNIPROTKB|O42480 ipo7 "RanBP7" [Xenopus laevis (taxid:8355)]

 Score = 352 (129.0 bits), Expect = 6.2e-31, P = 6.2e-31
 Identities = 59/116 (50%), Positives = 88/116 (75%)

Query:     1 MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
             M  ++++PVRQAGV+YLKN+IT  W ++EV PG     ++ E+D+  IR+ IV+A++ +P
Sbjct:    44 MSEQLELPVRQAGVIYLKNMITQYWPDREVTPGELPPHTIPEEDRHCIRENIVEAIMHSP 103

Query:    61 EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
             E+IRVQL  C+ +I+KHD+P +WT +V+K+  YLQ+ ++  W G LLCLYQLVKNY
Sbjct:   104 ELIRVQLTTCIHHIIKHDYPNRWTAVVEKIGFYLQSDNSACWLGILLCLYQLVKNY 159

GO:0005515 "protein binding" evidence=IPI

GO:0006610 "ribosomal protein import into nucleus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9EPL8	IPO7_MOUSE	No assigned EC number	0.5258	1.0	0.1117	yes	N/A
O95373	IPO7_HUMAN	No assigned EC number	0.5258	1.0	0.1117	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	116
COG5656	970	COG5656, SXM1, Importin, protein involved in nucle	7e-14
COG5657	947	COG5657, CSE1, CAS/CSE protein involved in chromos	3e-12
pfam03810	71	pfam03810, IBN_N, Importin-beta N-terminal domain	7e-08
smart00913	67	smart00913, IBN_N, Importin-beta N-terminal domain	3e-06

>gnl|CDD|227943 COG5656, SXM1, Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

 Score = 66.0 bits (161), Expect = 7e-14
 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 3/116 (2%)

Query: 1   MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP 60
              E D+ V+ +  +Y KN I   W  K  D           + K  + + I+D  + +P
Sbjct: 45  SKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKA---DEKSEAKKYLIENILDVFLYSP 101

Query: 61  EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           EV R  L   + NI   D P     +  K +  L++ +A   +  LLCL +L K Y
Sbjct: 102 EVTRTALNAILVNIFSEDKPSDLWGLFPKAANLLRSSEANHVYTGLLCLEELFKAY 157

Length = 970

>gnl|CDD|227944 COG5657, CSE1, CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]

 Score = 61.4 bits (149), Expect = 3e-12
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 7/112 (6%)

Query: 5   VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIR 64
             M +R A ++  KN I   W E+  +       S+   +  +IRD +   ++ +   ++
Sbjct: 50  NSMSLRWAALIQFKNYIDKHWREENGN-------SILPDENVLIRDELFSLIISSSNQLQ 102

Query: 65  VQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           +Q A+ VS I + DFP +W  +V  +   L   D      +L  L+ + K  
Sbjct: 103 IQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRL 154

Length = 947

>gnl|CDD|217743 pfam03810, IBN_N, Importin-beta N-terminal domain

 Score = 45.7 bits (109), Expect = 7e-08
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 10/54 (18%)

Query: 4  EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVV 57
            D+ VRQ   +YLKNLIT  W             SL  ++K  IR+ +++ + 
Sbjct: 27 SSDLQVRQLAALYLKNLITRHWN----------QLSLPPEEKEQIRNNLLNLLG 70

Length = 71

>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain

 Score = 41.5 bits (98), Expect = 3e-06
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 12/57 (21%)

Query: 1  MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVV 57
          + +  D  VRQ   + LKN IT +W             SL E++K  I++++++ ++
Sbjct: 22 LANSEDQYVRQLAAITLKNKITRRWS------------SLPEEEKEEIKNSLLELLL 66

Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins.. which is important for importin-beta mediated transport. Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	116
KOG1991|consensus	1010		99.93
KOG1992|consensus	960		99.91
COG5657	947	CSE1 CAS/CSE protein involved in chromosome segreg	99.84
KOG1993|consensus	978		99.84
KOG2274|consensus	1005		99.81
KOG2171|consensus	1075		99.78
COG5656	970	SXM1 Importin, protein involved in nuclear import	99.68
KOG2023|consensus	885		99.58
KOG1241|consensus	859		99.54
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.33
PF03810	77	IBN_N: Importin-beta N-terminal domain; InterPro:	99.26
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	98.98
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	98.75
KOG2020|consensus	1041		98.33
KOG2022|consensus	982		97.11
KOG2081|consensus	559		96.94
KOG2021|consensus	980		96.49
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.16
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.96
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.94
PF04510	174	DUF577: Family of unknown function (DUF577); Inter	95.58
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	95.54
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	94.74
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.44
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	94.41
PF09324	86	DUF1981: Domain of unknown function (DUF1981); Int	94.33
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	94.16
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	93.96
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	93.91
PF13925	164	Katanin_con80: con80 domain of Katanin	93.87
KOG1410|consensus	1082		93.32
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	93.01
PTZ00429	746	beta-adaptin; Provisional	92.95
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	92.92
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	92.72
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	92.26
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	92.07
PF01465	46	GRIP: GRIP domain; InterPro: IPR000237 The GRIP (g	92.02
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	91.27
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	91.15
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	90.03
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	89.84
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	89.83
smart00755	46	Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-	88.81
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	88.48
KOG1062|consensus	866		88.46
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	87.98
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	87.63
PTZ00429	746	beta-adaptin; Provisional	87.5
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	86.87
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	85.69
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	85.53
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	85.0
PF03810	77	IBN_N: Importin-beta N-terminal domain; InterPro:	84.99
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	84.87
KOG1824|consensus	1233		84.57
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	84.04
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	83.54
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	82.3
cd03571	123	ENTH_epsin ENTH domain, Epsin family; The epsin (E	81.97
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	81.94
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	81.32
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	80.59
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	80.17

>KOG1991|consensus

Probab=99.93  E-value=3e-25  Score=178.76  Aligned_cols=113  Identities=50%  Similarity=0.922  Sum_probs=106.3

Q ss_pred             CCCCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC
Q psy16982          1 MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP   80 (116)
Q Consensus         1 ~~~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P   80 (116)
                      |+++.+.+|||+|||||||.|.++|+... ..|  ....+++++|..||++|++.+.+.+..+|.|+..|+..|.+.|||
T Consensus        46 ~~d~~~l~vrqaaaIYlKN~I~~~W~~~~-~~g--~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p  122 (1010)
T KOG1991|consen   46 MDDGVPLPVRQAAAIYLKNKITKSWSSHE-APG--RPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYP  122 (1010)
T ss_pred             HccCCchhHHHHHHHHHHHHHHhcCCccC-CCC--CcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCc
Confidence            78899999999999999999999999875 223  245799999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982         81 GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        81 ~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y  116 (116)
                      ++||++++.+.+.+++++...+++||.||+.+||+|
T Consensus       123 ~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~y  158 (1010)
T KOG1991|consen  123 EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTY  158 (1010)
T ss_pred             ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998

>KOG1992|consensus

Probab=99.91  E-value=1.1e-23  Score=167.68  Aligned_cols=110  Identities=30%  Similarity=0.489  Sum_probs=103.3

Q ss_pred             CCCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCC
Q psy16982          2 MSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPG   81 (116)
Q Consensus         2 ~~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~   81 (116)
                      +++.|.++|.+||++|||+|+++|....+.     ...+.+++|+.||..|+.++.+.+..|+.|++++|+.|+++|||+
T Consensus        48 ~~~~d~~~r~aaav~fKN~iKr~W~~~~~~-----~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~  122 (960)
T KOG1992|consen   48 NGQQDPQIRVAAAVYFKNYIKRNWIPAEDS-----PIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPD  122 (960)
T ss_pred             ccCcChhHHHHHHHHHHHHHHhccCcCCCC-----ccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccch
Confidence            456799999999999999999999875532     357999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982         82 KWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        82 ~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y  116 (116)
                      +||+|+|++++.++++|.+...|.|.+-+.++|||
T Consensus       123 kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~  157 (960)
T KOG1992|consen  123 KWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRY  157 (960)
T ss_pred             hhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999998

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]

Probab=99.84  E-value=9.4e-21  Score=152.15  Aligned_cols=108  Identities=25%  Similarity=0.438  Sum_probs=98.1

Q ss_pred             CCCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCC
Q psy16982          2 MSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPG   81 (116)
Q Consensus         2 ~~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~   81 (116)
                      +.+.+.++|+.|+|+|||+|++||.....       ..+.++++..||..++..+.+.++.+.-|.+++++.||+.|||+
T Consensus        47 ~~~~~m~lR~~a~i~fkn~I~~~W~~~~~-------~~i~p~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPd  119 (947)
T COG5657          47 SAFNSMSLRWAALIQFKNYIDKHWREENG-------NSILPDENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPD  119 (947)
T ss_pred             ccccchhHHHHHHHHHHhhHHHHhhhhcc-------cCCCCccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcc
Confidence            34678899999999999999999985332       25777777799999999999999888889999999999999999


Q ss_pred             chhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982         82 KWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        82 ~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y  116 (116)
                      +||+|+|.+.+.+++.|....++.|.+++.++|+|
T Consensus       120 eWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~  154 (947)
T COG5657         120 EWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRL  154 (947)
T ss_pred             cchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999986

>KOG1993|consensus

Probab=99.84  E-value=8.4e-21  Score=151.04  Aligned_cols=107  Identities=26%  Similarity=0.397  Sum_probs=97.9

Q ss_pred             CCCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCC
Q psy16982          2 MSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPG   81 (116)
Q Consensus         2 ~~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~   81 (116)
                      |.+.+.+||.+|+|||||.|.++|+...       ...+|+|+|+.||..++..+..+.+++..|.|.++++||+.|||-
T Consensus        43 ~~t~dv~vRWmAviyfKNgIdryWR~~~-------~~sl~~EEK~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPr  115 (978)
T KOG1993|consen   43 SKTNDVSVRWMAVIYFKNGIDRYWRRNT-------KMSLPPEEKDFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPR  115 (978)
T ss_pred             ccccceeeeeehhhhHhcchhHHhhcCC-------cccCCHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCc
Confidence            4567789999999999999999999543       247999999999999999999777999999999999999999999


Q ss_pred             chhHHHHHHHHhhCCC----ChHHHhHHHHHHHHHHhh
Q psy16982         82 KWTQIVDKVSIYLQNP----DATPWFGALLCLYQLVKN  115 (116)
Q Consensus        82 ~Wp~Ll~~l~~~l~~~----~~~~~~~~L~~L~~l~~~  115 (116)
                      +||+|+|.+.+.+++.    |....+..|.+|+.+.|.
T Consensus       116 eWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~  153 (978)
T KOG1993|consen  116 EWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKA  153 (978)
T ss_pred             cchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            9999999999999875    999999999999999874

>KOG2274|consensus

Probab=99.81  E-value=9.9e-20  Score=146.28  Aligned_cols=112  Identities=24%  Similarity=0.416  Sum_probs=101.4

Q ss_pred             CCCCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC
Q psy16982          1 MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP   80 (116)
Q Consensus         1 ~~~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P   80 (116)
                      |+.+.+.+.||+|.|+||++|.+||....+.+..  ....+++.|..||+.+++.+.++..++++..+++|+.||+.|||
T Consensus        46 ~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~--~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~P  123 (1005)
T KOG2274|consen   46 ANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRY--PLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYP  123 (1005)
T ss_pred             hCcccCchHHHHHHHHHHHHHHHhCCChHhhccC--CCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCc
Confidence            4566788999999999999999999987765543  22378999999999999999987789999999999999999999


Q ss_pred             CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         81 GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        81 ~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      ++||+|++.++.+++++|.+.+++++.+|..+..
T Consensus       124 d~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~  157 (1005)
T KOG2274|consen  124 DEWPELVPFILKLLSSGNENSIHGAMRVLAELSD  157 (1005)
T ss_pred             hhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence            9999999999999999999999999999998864

>KOG2171|consensus

Probab=99.78  E-value=9.6e-19  Score=143.19  Aligned_cols=102  Identities=25%  Similarity=0.457  Sum_probs=96.1

Q ss_pred             CCCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHhccCC
Q psy16982          2 MSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP-EVIRVQLAVCVSNIVKHDFP   80 (116)
Q Consensus         2 ~~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~-~~i~~~l~~~i~~Ia~~d~P   80 (116)
                      ..+.+.++||+|||.+|+.+.++|+            .++++.|+.||+.||.++.+++ +.||+.+|++|+.||+.++|
T Consensus        46 ~~~~~p~~Rq~aaVl~Rkl~~~~w~------------~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~  113 (1075)
T KOG2171|consen   46 ATSADPQVRQLAAVLLRKLLTKHWS------------RLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLP  113 (1075)
T ss_pred             hcCCChHHHHHHHHHHHHHHHHHhh------------cCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence            4577899999999999999999997            6999999999999999999987 79999999999999999999


Q ss_pred             CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         81 GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        81 ~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      ++||+|++.+++..+|+|+...+.|+.+|..+-+.
T Consensus       114 e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~  148 (1075)
T KOG2171|consen  114 EKWPELLQFLFQSTKSPNPSLRESALLILSSLPET  148 (1075)
T ss_pred             cchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhh
Confidence            99999999999999999999999999999987653

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=2.1e-16  Score=125.70  Aligned_cols=112  Identities=29%  Similarity=0.495  Sum_probs=94.2

Q ss_pred             CCCCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC
Q psy16982          1 MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP   80 (116)
Q Consensus         1 ~~~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P   80 (116)
                      |+++.+.++|+.|||||||.|.+.|+...+...   ..-..++.|+.++++++......+...|+.+-.++..|...|||
T Consensus        45 s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i---~~Dek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~p  121 (970)
T COG5656          45 SKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGI---KADEKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKP  121 (970)
T ss_pred             hhccCCchhhHHHHHHHhhhhhhhhhhcccCCC---CCcccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCc
Confidence            467899999999999999999999998443210   01234556666666666666777788999999999999999999


Q ss_pred             -CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982         81 -GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        81 -~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y  116 (116)
                       +.|| |+|...+++.+++...++.||.|+.++||.|
T Consensus       122 s~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkay  157 (970)
T COG5656         122 SDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAY  157 (970)
T ss_pred             hhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHH
Confidence             9999 9999999999999999999999999999987

>KOG2023|consensus

Probab=99.58  E-value=2.5e-15  Score=118.65  Aligned_cols=99  Identities=19%  Similarity=0.340  Sum_probs=94.3

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCch
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKW   83 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~W   83 (116)
                      +.+..+|.+|++.|||.++.+|.            .++.+.+.+||+.++.++.++++.||...+.+|++|++..+-..|
T Consensus        59 ~~d~~~Rs~aGLlLKNnvr~~~~------------~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~w  126 (885)
T KOG2023|consen   59 SEDVPTRSLAGLLLKNNVRGHYN------------SIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHW  126 (885)
T ss_pred             ccchhHHHHhhhhHhcccccccc------------CCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccc
Confidence            45778999999999999999997            577899999999999999999999999999999999999988999


Q ss_pred             hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         84 TQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        84 p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      |+++|.+.+++.++|.+...|++.+|.+|||
T Consensus       127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcE  157 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYNTCEGAFGALQKICE  157 (885)
T ss_pred             hhHHHHHHHHhcCCcccccchhHHHHHHHHh
Confidence            9999999999999999999999999999998

>KOG1241|consensus

Probab=99.54  E-value=9.4e-15  Score=116.45  Aligned_cols=113  Identities=16%  Similarity=0.186  Sum_probs=95.7

Q ss_pred             CCCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC-
Q psy16982          2 MSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP-   80 (116)
Q Consensus         2 ~~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P-   80 (116)
                      +.+.+..+|++|++.|||.+..+-....... ...|..++.+.|++||..++.+|..+.+...+..++|++.||..|.| 
T Consensus        46 n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~-~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~  124 (859)
T KOG1241|consen   46 NDNSSDVARMAAGLQLKNSLTAKDPERKQQY-QQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQ  124 (859)
T ss_pred             ccCCcHHHHHHHhHHHhhhhccCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCch
Confidence            3466788999999999999986544322110 12367899999999999999999998888999999999999999999 


Q ss_pred             CchhHHHHHHHHhhCCCChH-HHhHHHHHHHHHHhh
Q psy16982         81 GKWTQIVDKVSIYLQNPDAT-PWFGALLCLYQLVKN  115 (116)
Q Consensus        81 ~~Wp~Ll~~l~~~l~~~~~~-~~~~~L~~L~~l~~~  115 (116)
                      +.||+|++.++.+..++.+. ...++|.+++++|+.
T Consensus       125 n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~  160 (859)
T KOG1241|consen  125 NQWPELIVTLVSNVGEEQASMVKESSLEALGYICED  160 (859)
T ss_pred             hhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc
Confidence            89999999999999887664 778999999999973

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.33  E-value=9.7e-12  Score=97.59  Aligned_cols=111  Identities=11%  Similarity=0.124  Sum_probs=94.0

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC-Cc
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP-GK   82 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P-~~   82 (116)
                      .....+|.+|++.|||.+..+-....... ...|..++.|.|++||...+.+|.++.+.+-+..+..++.||+.|.| +.
T Consensus        52 ns~~~~Rm~agl~LKN~l~a~d~~~~~~~-~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~  130 (858)
T COG5215          52 NSNDQLRMVAGLILKNSLHANDPELQKGC-SQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSL  130 (858)
T ss_pred             CCcHHHHHHHHHHHhhhhhcCCHHHHHHH-HHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCcccc
Confidence            44678999999999999987654322111 12367899999999999999999999999999999999999999999 89


Q ss_pred             hhHHHHHHHHhhCCCCh-HHHhHHHHHHHHHHhh
Q psy16982         83 WTQIVDKVSIYLQNPDA-TPWFGALLCLYQLVKN  115 (116)
Q Consensus        83 Wp~Ll~~l~~~l~~~~~-~~~~~~L~~L~~l~~~  115 (116)
                      ||+|+..++.+...+.+ ..+..+|.++++.|++
T Consensus       131 wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces  164 (858)
T COG5215         131 WPGLMEEMVRNVGDEQPVSGKCESLGICGYHCES  164 (858)
T ss_pred             chHHHHHHHHhccccCchHhHHHHHHHHHHHhhc
Confidence            99999999999988766 4567899999999975

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope

Probab=99.26  E-value=2.5e-12  Score=76.66  Aligned_cols=53  Identities=26%  Similarity=0.392  Sum_probs=44.8

Q ss_pred             CCCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhc
Q psy16982          2 MSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVM   58 (116)
Q Consensus         2 ~~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~   58 (116)
                      +++.+..+|++|+++|||.|+++|.....    ..|..+++++|+.||+.|+++|.+
T Consensus        25 ~~~~~~~~R~~A~i~LKn~I~~~W~~~~~----~~~~~~~~~~k~~Ik~~ll~~l~~   77 (77)
T PF03810_consen   25 SNSQDPEVRQLAAILLKNLIKKNWSPSKQ----KGWSQLPEEEKEQIKSQLLQLLLQ   77 (77)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHSGGHHHH----HHHHGSSHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHcCchhhc----cCCCCCCHHHHHHHHHHHHHHHcC
Confidence            56789999999999999999999985431    124579999999999999999864

Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=98.98  E-value=1.2e-09  Score=71.95  Aligned_cols=55  Identities=27%  Similarity=0.431  Sum_probs=49.2

Q ss_pred             cHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         60 PEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        60 ~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      |+.|+++++.+++.|+.+|||..||++++.+++.+++ ++.....+|.+|..+.+.
T Consensus         1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eE   55 (148)
T PF08389_consen    1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEE   55 (148)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHH
Confidence            4579999999999999999999999999999999988 578888899999888764

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=98.75  E-value=4.9e-08  Score=78.02  Aligned_cols=98  Identities=19%  Similarity=0.302  Sum_probs=78.9

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHHH
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP---------EVIRVQLAVCVSNI   74 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~---------~~i~~~l~~~i~~I   74 (116)
                      +.-++.+..|.-.|-..|++.|+            .+|++.|..||..+++.+...+         +.+-+.+-.++..|
T Consensus        58 S~~pqskyiALs~LdklIttkWk------------llp~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqI  125 (1053)
T COG5101          58 SKLPQSKYIALSLLDKLITTKWK------------LLPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQI  125 (1053)
T ss_pred             ccCcchhhhHHHHHHHHHHhhhh------------hCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHH
Confidence            33456778888999999999997            6999999999999999987632         23456678889999


Q ss_pred             HhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         75 VKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        75 a~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      ++.|||.+||+++|++++..+ .+.+.....+.+|+.+-|
T Consensus       126 lKqeWP~nWP~FIpeli~~S~-~s~~vCeNnmivLklLsE  164 (1053)
T COG5101         126 LKQEWPRNWPTFIPELINVSQ-ISMEVCENNMIVLKLLSE  164 (1053)
T ss_pred             HHHhcccccchhhHHHHhhcc-chHHHHhccHHHHHHhHH
Confidence            999999999999999999766 456666677777766544

>KOG2020|consensus

Probab=98.33  E-value=9e-07  Score=74.36  Aligned_cols=96  Identities=17%  Similarity=0.334  Sum_probs=77.0

Q ss_pred             ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHHHHh
Q psy16982          6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMA---------PEVIRVQLAVCVSNIVK   76 (116)
Q Consensus         6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~---------~~~i~~~l~~~i~~Ia~   76 (116)
                      ...+|.+|--+|-+.|+.+|+            .+|.+.|..+|..+++.....         .+.++.+++.++..|++
T Consensus        58 ~~~~k~f~Lqlle~vik~~W~------------~~~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K  125 (1041)
T KOG2020|consen   58 NPILKYFALQLLENVIKFRWN------------SLPVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVK  125 (1041)
T ss_pred             CchhheeeHHHHHHHHHHhcc------------cCCccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHH
Confidence            457888899999999999997            588899999999999998652         13588999999999999


Q ss_pred             ccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         77 HDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        77 ~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      .|||+.||++++.+.+.+..+ .......+.+|+.+.|
T Consensus       126 ~eWp~~wp~~i~dl~~~s~~s-~~~~el~m~Il~lLsE  162 (1041)
T KOG2020|consen  126 REWPAIWPTFIPDLAQSSKTS-ETVCELSMIILLLLSE  162 (1041)
T ss_pred             HHHHhhcchhhhhHHHHhhcC-cccchHHHHHHHHHHH
Confidence            999999999999999988743 3333444555555444

>KOG2022|consensus

Probab=97.11  E-value=0.0038  Score=52.03  Aligned_cols=83  Identities=14%  Similarity=0.292  Sum_probs=67.4

Q ss_pred             CCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhccC
Q psy16982          3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMA---PEVIRVQLAVCVSNIVKHDF   79 (116)
Q Consensus         3 ~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~---~~~i~~~l~~~i~~Ia~~d~   79 (116)
                      +.--..+|.++|+.|--.|.++|.            .+++++...+|..++..+...   ++.|-+.++..++..+-+-.
T Consensus        51 ~~k~~evqyFGAltL~~ki~~~~e------------~~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~  118 (982)
T KOG2022|consen   51 PDKSSEVQYFGALTLHDKINTRWE------------ECPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMV  118 (982)
T ss_pred             CCchhHHHHHhHHHHHHHHHhhhc------------cCChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHc
Confidence            344456799999999999999997            588899999999999998763   25566667777776666667


Q ss_pred             CCchhHHHHHHHHhhCCC
Q psy16982         80 PGKWTQIVDKVSIYLQNP   97 (116)
Q Consensus        80 P~~Wp~Ll~~l~~~l~~~   97 (116)
                      |+.||+-+..++..++.+
T Consensus       119 ~d~Wp~ai~~vi~~l~~q  136 (982)
T KOG2022|consen  119 PDLWPTAIQDVIPTLQGQ  136 (982)
T ss_pred             cccCCchHHHHHHHHhcc
Confidence            999999999999998864

>KOG2081|consensus

Probab=96.94  E-value=0.0048  Score=49.05  Aligned_cols=90  Identities=27%  Similarity=0.355  Sum_probs=68.1

Q ss_pred             CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHhccCCC
Q psy16982          5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVM---APEVIRVQLAVCVSNIVKHDFPG   81 (116)
Q Consensus         5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~---~~~~i~~~l~~~i~~Ia~~d~P~   81 (116)
                      .+...-.+|+-.+||.|+..+.            .+++.+-...|+.++..+..   .++.++.|++.+++.+|-+ +| 
T Consensus        29 ~~~~~~~FaaqTlr~Ki~~~F~------------~Lp~~~~~slrdsl~thl~~l~~~~~~i~tQL~vavA~Lal~-~~-   94 (559)
T KOG2081|consen   29 CDVEALLFAAQTLRNKIQYDFS------------ELPPLTHASLRDSLITHLKELHDHPDVIRTQLAVAVAALALH-MP-   94 (559)
T ss_pred             chHHHHHHHHHHHHHHHHhhHH------------hcCcchhHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-hH-
Confidence            4667889999999999999886            46776667777766666554   2249999999999999988 56 


Q ss_pred             chhHHHHHHHHhhCCCChHHHhHHHHHH
Q psy16982         82 KWTQIVDKVSIYLQNPDATPWFGALLCL  109 (116)
Q Consensus        82 ~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L  109 (116)
                      +|.+-++++++..++..+. +..-|.+|
T Consensus        95 ~W~n~I~e~v~~~~~~~~~-~~~lLeiL  121 (559)
T KOG2081|consen   95 EWVNPIFELVRALSNKHPA-VPILLEIL  121 (559)
T ss_pred             hhcchHHHHHHHhhcCCcc-HHHHHHHH
Confidence            8999888888888776554 33334333

>KOG2021|consensus

Probab=96.49  E-value=0.03  Score=46.44  Aligned_cols=59  Identities=14%  Similarity=0.339  Sum_probs=51.0

Q ss_pred             CCCHhHHHHHHHHHHHHHhc-----C----cHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCC
Q psy16982         39 SLHEQDKAMIRDAIVDAVVM-----A----PEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNP   97 (116)
Q Consensus        39 ~i~~~~k~~IK~~ll~~l~~-----~----~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~   97 (116)
                      ..+..+.+.||..+..-+.-     +    +.-|++.++++++.+.-.+||..||+++..+...++-+
T Consensus        73 e~nl~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~  140 (980)
T KOG2021|consen   73 EANLNELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVD  140 (980)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence            47888999999999876642     3    35799999999999999999999999999999988754

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.16  E-value=0.15  Score=34.88  Aligned_cols=92  Identities=13%  Similarity=0.095  Sum_probs=72.2

Q ss_pred             hHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHH
Q psy16982          7 MPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQI   86 (116)
Q Consensus         7 ~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~L   86 (116)
                      +.+|.-|.+.+=-...++-+-            +     +..=..+..+|.++++.||.+...+++.+...|+-.--+.+
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~------------v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l   64 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNL------------V-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQL   64 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHH------------H-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhh
Confidence            467777777777766665431            1     12234677888888899999999999999999986555777


Q ss_pred             HHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         87 VDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        87 l~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      +..++..+..+|++....|-.+|.++.++
T Consensus        65 ~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   65 FSRILKLLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             hHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence            79999999988999999999999888765

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.96  E-value=0.025  Score=27.57  Aligned_cols=30  Identities=17%  Similarity=0.272  Sum_probs=23.3

Q ss_pred             HHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         86 IVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        86 Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      ++|.++++++++++.....+..+|..+++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            577888888888888888888888888764

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=95.94  E-value=0.062  Score=37.66  Aligned_cols=102  Identities=16%  Similarity=0.150  Sum_probs=64.1

Q ss_pred             CCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHH---HHHHHHHhcCcHHHHHHHHHHHHHHHhc--
Q psy16982          3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIR---DAIVDAVVMAPEVIRVQLAVCVSNIVKH--   77 (116)
Q Consensus         3 ~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK---~~ll~~l~~~~~~i~~~l~~~i~~Ia~~--   77 (116)
                      ++.+-..|.-|...|++.+..+ ...          ...+..-..+|   ..+...+.+.-+.+....+.+++.++..  
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~-~~~----------~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~   85 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGN-APE----------DFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG   85 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH--B---------------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG
T ss_pred             CccCHHHHHHHHHHHHHHHHcC-Ccc----------ccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            4567789999999999999988 211          34566667777   3444444333357788888888888755  


Q ss_pred             -cCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         78 -DFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        78 -d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                       +|...=+.++|.|+..+.+++.-....+..||..+++.
T Consensus        86 ~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~  124 (228)
T PF12348_consen   86 SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIES  124 (228)
T ss_dssp             GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTT
T ss_pred             HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH
Confidence             33223466888888888888777778888888888764

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins

Probab=95.58  E-value=0.063  Score=36.93  Aligned_cols=48  Identities=19%  Similarity=0.257  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHhcCc--HHHHHHHHHHHHHHHhcc--CC-CchhHHHHHHHHhh
Q psy16982         47 MIRDAIVDAVVMAP--EVIRVQLAVCVSNIVKHD--FP-GKWTQIVDKVSIYL   94 (116)
Q Consensus        47 ~IK~~ll~~l~~~~--~~i~~~l~~~i~~Ia~~d--~P-~~Wp~Ll~~l~~~l   94 (116)
                      .||..|+.||..+.  ...-+.++.+++.+|..-  +| +.|++|.+.|.+..
T Consensus         3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~   55 (174)
T PF04510_consen    3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS   55 (174)
T ss_pred             chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh
Confidence            47899999998765  356677777887777653  46 89999999998866

Many of these members contain a repeated region.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=95.54  E-value=0.062  Score=33.11  Aligned_cols=97  Identities=16%  Similarity=0.029  Sum_probs=66.9

Q ss_pred             ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCC---c
Q psy16982          6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPG---K   82 (116)
Q Consensus         6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~---~   82 (116)
                      +..+|..|...|.|.....-..            ...-.+..+=..++++|.+.+..++...+.+++.|+...-+.   -
T Consensus        20 ~~~~~~~a~~~l~~l~~~~~~~------------~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   87 (120)
T cd00020          20 DENVQREAAWALSNLSAGNNDN------------IQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV   87 (120)
T ss_pred             CHHHHHHHHHHHHHHhcCCHHH------------HHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence            3578888888888876652110            000011123346666676777899999999999998764221   2


Q ss_pred             h-hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         83 W-TQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        83 W-p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      + .++++.+.+.++..+......++.+|..+|+
T Consensus        88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            3 2479999999999899999999999998874

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=94.74  E-value=0.69  Score=31.96  Aligned_cols=68  Identities=13%  Similarity=0.139  Sum_probs=58.8

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982         48 IRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        48 IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y  116 (116)
                      .=..++++..+++..+|....+++..|.+.-+-+=+ +-+|.++.+..+.|+.....|...+..+++||
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~   76 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-QCVPTLIALETSPNPSIRSRAYQLLKELHEKH   76 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence            334778888888899999999999999999875433 48999999999999999999999999999997

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=94.44  E-value=0.4  Score=29.84  Aligned_cols=67  Identities=19%  Similarity=0.181  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc---cCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         47 MIRDAIVDAVVMAPEVIRVQLAVCVSNIVKH---DFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        47 ~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~---d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      .|=.-++.++.+++..||-..++++..|++.   +.....+++++.+...+...|++. ..|-..|-.++|
T Consensus        27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~V-r~~a~~Ld~llk   96 (97)
T PF12755_consen   27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENV-RSAAELLDRLLK   96 (97)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHHhc
Confidence            3444566777788899999999999988766   222356778888888777776654 444467766655

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.41  E-value=0.34  Score=37.86  Aligned_cols=71  Identities=14%  Similarity=0.177  Sum_probs=59.6

Q ss_pred             CHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhH-HHHHHHHhhCCCChHHHhHHHHHHHHH
Q psy16982         41 HEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQ-IVDKVSIYLQNPDATPWFGALLCLYQL  112 (116)
Q Consensus        41 ~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~-Ll~~l~~~l~~~~~~~~~~~L~~L~~l  112 (116)
                      +++.-+.+-..+.+++.++.+.||+..+.++..|.+. +|+.-+. +++.+.+.+.+.|+..+.+|+.++..+
T Consensus       108 ~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~-~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i  179 (526)
T PF01602_consen  108 TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK-DPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI  179 (526)
T ss_dssp             SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence            5566666777788888888889999999999999988 4776666 799999999888988888999988887

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins

Probab=94.33  E-value=0.46  Score=28.81  Aligned_cols=66  Identities=12%  Similarity=0.127  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhccCC---CchhHHHHHHHHhhCCCChHHHhHHHHHHHH
Q psy16982         45 KAMIRDAIVDAVVMA-PEVIRVQLAVCVSNIVKHDFP---GKWTQIVDKVSIYLQNPDATPWFGALLCLYQ  111 (116)
Q Consensus        45 k~~IK~~ll~~l~~~-~~~i~~~l~~~i~~Ia~~d~P---~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~  111 (116)
                      ++.+|- +...+.+. +..+|..+..|+..+...-..   ..||.++..+-.....++...+..|..++..
T Consensus        16 ~~fL~P-f~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~   85 (86)
T PF09324_consen   16 KDFLKP-FEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL   85 (86)
T ss_pred             HHHHHH-HHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence            344443 33343444 368999999999998875443   5899999999998888888889999888764

It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=94.16  E-value=0.15  Score=30.02  Aligned_cols=56  Identities=16%  Similarity=0.087  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHH-HhHHHHHH
Q psy16982         47 MIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATP-WFGALLCL  109 (116)
Q Consensus        47 ~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~-~~~~L~~L  109 (116)
                      ..-..|++.+.+++..+|.+.+.+++.|.       -|+.++.+...+.+++... ...+..+|
T Consensus        31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------~~~~~~~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   31 EAIPALIELLKDEDPMVRRAAARALGRIG-------DPEAIPALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence            44455666665555677777777777663       3566777777666654333 44555544

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=93.96  E-value=0.7  Score=27.07  Aligned_cols=55  Identities=13%  Similarity=0.106  Sum_probs=42.3

Q ss_pred             HHHHHH-hcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHH
Q psy16982         51 AIVDAV-VMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQL  112 (116)
Q Consensus        51 ~ll~~l-~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l  112 (116)
                      .|++.| .+++..+|...+.+++.+.       =|+.++.+...++++|+.....+..+|..+
T Consensus         3 ~L~~~l~~~~~~~vr~~a~~~L~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i   58 (88)
T PF13646_consen    3 ALLQLLQNDPDPQVRAEAARALGELG-------DPEAIPALIELLKDEDPMVRRAAARALGRI   58 (88)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHCCT-------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHcC-------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            567777 4455899988888877332       247999999999999998888888887653

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=93.91  E-value=0.58  Score=28.60  Aligned_cols=65  Identities=18%  Similarity=0.146  Sum_probs=50.0

Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchh-----HHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         49 RDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWT-----QIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        49 K~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp-----~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      -..+++.|.+.+..++...+.++..++... |..+.     +.++.+.+.++++|+..+..++.+|..++.
T Consensus         9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~   78 (120)
T cd00020           9 LPALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAA   78 (120)
T ss_pred             hHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc
Confidence            345677777777889999999999998763 33232     566778888888889999999999998875

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF13925 Katanin_con80: con80 domain of Katanin

Probab=93.87  E-value=0.26  Score=33.49  Aligned_cols=50  Identities=22%  Similarity=0.259  Sum_probs=41.2

Q ss_pred             HHHHHHHHHhccCCCch-----hHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982         67 LAVCVSNIVKHDFPGKW-----TQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        67 l~~~i~~Ia~~d~P~~W-----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y  116 (116)
                      +++++..+....=|+.|     ++++|.+..+++|....++..||.+|..++++|
T Consensus        46 lvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f  100 (164)
T PF13925_consen   46 LVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKF  100 (164)
T ss_pred             HHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence            46677777744445556     589999999999999999999999999999876

>KOG1410|consensus

Probab=93.32  E-value=2.7  Score=35.19  Aligned_cols=94  Identities=20%  Similarity=0.239  Sum_probs=76.0

Q ss_pred             HHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhc-Cc---HHHHHHHHHHHHHHHhccCCC--
Q psy16982          8 PVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVM-AP---EVIRVQLAVCVSNIVKHDFPG--   81 (116)
Q Consensus         8 ~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~-~~---~~i~~~l~~~i~~Ia~~d~P~--   81 (116)
                      --..+|+..|-+.+.++-             ++|-+.|--||..+++.+.+ .|   +-+...+++.++.|-+..|-+  
T Consensus        54 Ys~mlAst~L~Klvs~~t-------------~lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~  120 (1082)
T KOG1410|consen   54 YSQMLASTCLMKLVSRKT-------------PLPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQ  120 (1082)
T ss_pred             hHHHHHHHHHHHHHcCCC-------------CCcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccc
Confidence            345667777777766543             58999999999999999998 33   457888999999999988762  


Q ss_pred             ----chhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         82 ----KWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        82 ----~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                          .+-+.+..+...++.++.+...-|+.+|..+..
T Consensus       121 k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvq  157 (1082)
T KOG1410|consen  121 KDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQ  157 (1082)
T ss_pred             cccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence                356889999999999999999999999988764

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=93.01  E-value=0.14  Score=27.93  Aligned_cols=51  Identities=16%  Similarity=0.089  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHhccCC---CchhHHHHHHHHhhCCCChHHHhHHHHHHHHH
Q psy16982         62 VIRVQLAVCVSNIVKHDFP---GKWTQIVDKVSIYLQNPDATPWFGALLCLYQL  112 (116)
Q Consensus        62 ~i~~~l~~~i~~Ia~~d~P---~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l  112 (116)
                      .+|...+.+|+.++....+   ..=|++++.+...+.+++......+..+|..|
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4677778888776644322   25578999999999887777777888887653

...

>PTZ00429 beta-adaptin; Provisional

Probab=92.95  E-value=0.97  Score=37.84  Aligned_cols=110  Identities=10%  Similarity=0.096  Sum_probs=71.1

Q ss_pred             CCChHHHHHHHHHhhhhhcccccc---------ccCCCCCC---------ccCCCCHhHHHHHHHHHHHHHhcCcHHHHH
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVE---------KEVDPGTP---------LAFSLHEQDKAMIRDAIVDAVVMAPEVIRV   65 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~---------~~~~~~~~---------~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~   65 (116)
                      +.+..+|.+.-+|+.++-+.+-..         .+-.+..+         ....-.++.-+.+=..+.+++.+.++-||+
T Consensus        79 S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRK  158 (746)
T PTZ00429         79 STDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRK  158 (746)
T ss_pred             CCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            346788888888888876543320         00000000         000112333344445556666667789999


Q ss_pred             HHHHHHHHHHhccCCCchh--HHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         66 QLAVCVSNIVKHDFPGKWT--QIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        66 ~l~~~i~~Ia~~d~P~~Wp--~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      ..+.|+..|-+.+ |+.-+  ++++.+..++..+|+..+.+++.+|.+|++
T Consensus       159 tAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~  208 (746)
T PTZ00429        159 TAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND  208 (746)
T ss_pred             HHHHHHHHHHhhC-cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence            9999999997764 54332  456777788889999999999999999875

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=92.92  E-value=0.44  Score=22.98  Aligned_cols=28  Identities=18%  Similarity=0.332  Sum_probs=23.3

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHhc
Q psy16982         50 DAIVDAVVMAPEVIRVQLAVCVSNIVKH   77 (116)
Q Consensus        50 ~~ll~~l~~~~~~i~~~l~~~i~~Ia~~   77 (116)
                      ..+++++.+++..||...+.++..|+++
T Consensus         3 p~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    3 PILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            4577888888899999999999999864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=92.72  E-value=0.39  Score=34.35  Aligned_cols=51  Identities=22%  Similarity=0.186  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHhccCCCchhHHHHHHHHhh-CCCChHHHhHHHHHHHHHHh
Q psy16982         63 IRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYL-QNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        63 i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l-~~~~~~~~~~~L~~L~~l~~  114 (116)
                      ..-..+.++..|+..+ |+.|+++++.|.+.+ +++++...-.++..+..+|+
T Consensus       100 ~~i~~a~s~~~ic~~~-p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~  151 (234)
T PF12530_consen  100 CLISIAASIRDICCSR-PDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE  151 (234)
T ss_pred             HHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            3444567888898885 889999999999999 67777777889999999985

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=92.26  E-value=2  Score=29.30  Aligned_cols=77  Identities=19%  Similarity=0.217  Sum_probs=51.8

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCch
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKW   83 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~W   83 (116)
                      +.+..||..|.+.|.+.+....-...                ..+=..++.++.++++.||.....++..++..-.|+--
T Consensus        36 D~~~~VR~~al~~Ls~Li~~d~ik~k----------------~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i   99 (178)
T PF12717_consen   36 DEDPLVRKTALLVLSHLILEDMIKVK----------------GQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNII   99 (178)
T ss_pred             CCCHHHHHHHHHHHHHHHHcCceeeh----------------hhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHH
Confidence            44679999999999999987654322                12223455666666677777777777777777666655


Q ss_pred             hHHHHHHHHhhCC
Q psy16982         84 TQIVDKVSIYLQN   96 (116)
Q Consensus        84 p~Ll~~l~~~l~~   96 (116)
                      .+.++.++..+++
T Consensus       100 ~~~~~e~i~~l~~  112 (178)
T PF12717_consen  100 YNNFPELISSLNN  112 (178)
T ss_pred             HHHHHHHHHHHhC
Confidence            6666666665554

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.07  E-value=0.56  Score=30.41  Aligned_cols=73  Identities=14%  Similarity=0.284  Sum_probs=51.4

Q ss_pred             CCCHhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHhccCCCc---h--hHHHHHHHHhhCCCChHHHhHHHHHHHHH
Q psy16982         39 SLHEQDKAMIRDAIVDAVVMAP-EVIRVQLAVCVSNIVKHDFPGK---W--TQIVDKVSIYLQNPDATPWFGALLCLYQL  112 (116)
Q Consensus        39 ~i~~~~k~~IK~~ll~~l~~~~-~~i~~~l~~~i~~Ia~~d~P~~---W--p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l  112 (116)
                      .+.+++-+.+| .|+++|..+. +..-.-.|.=|+..+++ +|..   .  -..=+.++++++++|++..+-||.|+..+
T Consensus        36 kf~~~~~~llk-~L~~lL~~s~d~~~laVac~Dig~~vr~-~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl  113 (119)
T PF11698_consen   36 KFEENNFELLK-KLIKLLDKSDDPTTLAVACHDIGEFVRH-YPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL  113 (119)
T ss_dssp             GGSSGGGHHHH-HHHHHH-SHHHHHHHHHHHHHHHHHHHH--GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHH-HHHHHHccCCCcceeehhhcchHHHHHH-ChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            56666667777 6788885543 55666677888888888 6742   1  12345678889999999999999999988


Q ss_pred             H
Q psy16982        113 V  113 (116)
Q Consensus       113 ~  113 (116)
                      +
T Consensus       114 m  114 (119)
T PF11698_consen  114 M  114 (119)
T ss_dssp             H
T ss_pred             H
Confidence            6

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins

Probab=92.02  E-value=0.57  Score=25.11  Aligned_cols=36  Identities=11%  Similarity=0.202  Sum_probs=27.6

Q ss_pred             hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcc
Q psy16982         43 QDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHD   78 (116)
Q Consensus        43 ~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d   78 (116)
                      .+.+++|+-+++.|...+...|.++..+|+.|.+.+
T Consensus         3 ~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs   38 (46)
T PF01465_consen    3 INLEYLKNVLLQFLESREPSEREQLLPVIATLLKFS   38 (46)
T ss_dssp             HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--
T ss_pred             hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCC
Confidence            467899999999999988888999999999998765

It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=91.27  E-value=3.3  Score=28.00  Aligned_cols=96  Identities=17%  Similarity=0.200  Sum_probs=61.9

Q ss_pred             ChHHHHHHHHHhhhhhccc-cccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHhc--cCCC
Q psy16982          6 DMPVRQAGVVYLKNLITNQ-WVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP-EVIRVQLAVCVSNIVKH--DFPG   81 (116)
Q Consensus         6 ~~~vR~~Aai~LKn~i~~~-w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~-~~i~~~l~~~i~~Ia~~--d~P~   81 (116)
                      +..-|..|...+|-.+... |.            .+.+.-..-++ .++..|.+++ ..+....+.+++.|...  +||+
T Consensus        38 ~~~~rw~G~~Ll~~~~~~~~~e------------~l~~~~~~W~~-~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~  104 (165)
T PF08167_consen   38 SAYSRWAGLCLLKVTVEQCSWE------------ILLSHGSQWLR-ALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT  104 (165)
T ss_pred             ChhhHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            4567888888888888876 75            34444445555 4788887755 57788888888888754  3332


Q ss_pred             --------chhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982         82 --------KWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        82 --------~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y  116 (116)
                              .=|.+++.+++.++.  ......+|.+|..+++.|
T Consensus       105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~  145 (165)
T PF08167_consen  105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH  145 (165)
T ss_pred             hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence                    223344444444443  345667888888887765

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=91.15  E-value=2.3  Score=26.11  Aligned_cols=66  Identities=15%  Similarity=0.169  Sum_probs=46.1

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHh-ccCC-CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982         51 AIVDAVVMAPEVIRVQLAVCVSNIVK-HDFP-GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        51 ~ll~~l~~~~~~i~~~l~~~i~~Ia~-~d~P-~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y  116 (116)
                      ..+.-+.++...+|.+--..++.... .+.+ ...|.++.-+.+.+..+|+=.-.+++.+|..++..|
T Consensus         7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~   74 (92)
T PF10363_consen    7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH   74 (92)
T ss_pred             HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence            34455556667899887666666654 4535 788999999999999887755556777666666543

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.03  E-value=7.8  Score=30.29  Aligned_cols=68  Identities=19%  Similarity=0.191  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982         46 AMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        46 ~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y  116 (116)
                      -.+=+.+.+-|.++++.+|.....+++.|+.   |+--|.+++.+.+.+.++++.....|+.++.++++.+
T Consensus        78 ~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~  145 (526)
T PF01602_consen   78 ILIINSLQKDLNSPNPYIRGLALRTLSNIRT---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD  145 (526)
T ss_dssp             HHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC
Confidence            3344555555666667888877777777774   4568999999999999999988889999999998753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=89.84  E-value=3.2  Score=26.06  Aligned_cols=50  Identities=18%  Similarity=0.110  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         61 EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        61 ~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      ...-..+++++.     +.|...++.+..|...+.+.++..++-+|.+|.++++.
T Consensus        18 ~~~i~~i~d~~~-----~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN   67 (115)
T cd00197          18 WPLIMEICDLIN-----ETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKN   67 (115)
T ss_pred             HHHHHHHHHHHH-----CCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence            344445555543     34788899999999999999999999999999999874

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=89.83  E-value=0.88  Score=23.18  Aligned_cols=28  Identities=21%  Similarity=0.141  Sum_probs=20.5

Q ss_pred             HHHHHHHhhCCCChHHHhHHHHHHHHHH
Q psy16982         86 IVDKVSIYLQNPDATPWFGALLCLYQLV  113 (116)
Q Consensus        86 Ll~~l~~~l~~~~~~~~~~~L~~L~~l~  113 (116)
                      .+|.|++++.++|...+..++.+|+.++
T Consensus        13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   13 GIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            5677777777777777777777777665

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245

Probab=88.81  E-value=1.2  Score=23.89  Aligned_cols=34  Identities=9%  Similarity=0.258  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcc
Q psy16982         44 DKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHD   78 (116)
Q Consensus        44 ~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d   78 (116)
                      +.+++|+-+++.|...+.. |.++..+|+.+.+.+
T Consensus         3 n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs   36 (46)
T smart00755        3 NFEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS   36 (46)
T ss_pred             cHHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence            4578999999999887755 899999999988775

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=88.48  E-value=3.9  Score=32.58  Aligned_cols=98  Identities=17%  Similarity=0.173  Sum_probs=69.2

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccC--CC
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDF--PG   81 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~--P~   81 (116)
                      +.+..|...|+-.|++..+..-.- .        ..++++.    ...|-..+.+++..+|-.+.+++..|++..-  -.
T Consensus       130 ~~d~~Va~~A~~~L~~l~~~~~~~-~--------~l~~~~~----~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~  196 (503)
T PF10508_consen  130 DPDLSVAKAAIKALKKLASHPEGL-E--------QLFDSNL----LSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE  196 (503)
T ss_pred             CCcHHHHHHHHHHHHHHhCCchhH-H--------HHhCcch----HHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence            456788888999999888642210 0        0122222    4556666666677888889999999987741  12


Q ss_pred             chh--HHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         82 KWT--QIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        82 ~Wp--~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      ..-  ++++.++..+.++|.-...+++.+|..+++
T Consensus       197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~  231 (503)
T PF10508_consen  197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAE  231 (503)
T ss_pred             HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence            222  499999999999888888999999999876

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1062|consensus

Probab=88.46  E-value=8.9  Score=32.52  Aligned_cols=112  Identities=10%  Similarity=0.035  Sum_probs=74.8

Q ss_pred             CCCCChHHHHHHHHHhhhhhccccccccCCC--CCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccC
Q psy16982          2 MSEVDMPVRQAGVVYLKNLITNQWVEKEVDP--GTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDF   79 (116)
Q Consensus         2 ~~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~--~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~   79 (116)
                      +=..+...|-+|+=.|-+++...-..-.+..  +-..-.+.+++.-++=|..+++||.+++..||+-.-+....|...  
T Consensus       303 ~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~--  380 (866)
T KOG1062|consen  303 DIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE--  380 (866)
T ss_pred             hccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc--
Confidence            3345668899999888888876655433210  001123567778888899999999999999988877777777665  


Q ss_pred             CCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982         80 PGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        80 P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y  116 (116)
                       .+=-.++.+++..+.+.|++..-..-.-+-.+.|+|
T Consensus       381 -~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkf  416 (866)
T KOG1062|consen  381 -SNVRVMVKELLEFLESSDEDFKADIASKIAELAEKF  416 (866)
T ss_pred             -ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence             355667777777777766655444444444555554

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=87.98  E-value=5.7  Score=31.64  Aligned_cols=97  Identities=9%  Similarity=0.079  Sum_probs=66.7

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCch
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKW   83 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~W   83 (116)
                      +.+..||.+|.-.+.+.+...-....         .+.+   ..+=..++.++.+++..+....+.++..|+++.  ..-
T Consensus        88 h~~~~Vr~l~l~~l~~~~~~~~~~~~---------~~~~---~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~  153 (503)
T PF10508_consen   88 HPSPKVRRLALKQLGRIARHSEGAAQ---------LLVD---NELLPLIIQCLRDPDLSVAKAAIKALKKLASHP--EGL  153 (503)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHH---------HhcC---ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhH
Confidence            34568999999888888754321000         0111   124456888888888999999999999999864  333


Q ss_pred             hHH-----HHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         84 TQI-----VDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        84 p~L-----l~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      ..+     +..+.+.+..+|.......+.++-.+++
T Consensus       154 ~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~  189 (503)
T PF10508_consen  154 EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS  189 (503)
T ss_pred             HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh
Confidence            444     7888888877666666677777777664

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=87.63  E-value=4.1  Score=31.51  Aligned_cols=54  Identities=19%  Similarity=0.312  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHhccCC-----CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         61 EVIRVQLAVCVSNIVKHDFP-----GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        61 ~~i~~~l~~~i~~Ia~~d~P-----~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      ..++...-.+++.|.++ -|     .+=|+|+|-+++.++.+|.+...++|.+|..+++.
T Consensus       337 ~~~k~~yL~ALs~ll~~-vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~  395 (415)
T PF12460_consen  337 DEIKSNYLTALSHLLKN-VPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE  395 (415)
T ss_pred             hhhHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence            34777888888888885 46     26789999999999999999999999999988763

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PTZ00429 beta-adaptin; Provisional

Probab=87.50  E-value=5.4  Score=33.57  Aligned_cols=56  Identities=7%  Similarity=0.081  Sum_probs=44.0

Q ss_pred             CcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982         59 APEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        59 ~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y  116 (116)
                      .+..++.....+|+.+|.. ||......++.|++++..+. +.+..++.+++.|+++|
T Consensus       380 ~D~ef~r~aIrAIg~lA~k-~~~~a~~cV~~Ll~ll~~~~-~~v~e~i~vik~Ilrky  435 (746)
T PTZ00429        380 VDMVFVVEVVRAIASLAIK-VDSVAPDCANLLLQIVDRRP-ELLPQVVTAAKDIVRKY  435 (746)
T ss_pred             CCHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHC
Confidence            3456778888889999855 78888999999999987643 34556788999998887

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=86.87  E-value=4.2  Score=24.90  Aligned_cols=51  Identities=18%  Similarity=0.302  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhh----CC--CChHHHhHHHHHHHHH
Q psy16982         61 EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYL----QN--PDATPWFGALLCLYQL  112 (116)
Q Consensus        61 ~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l----~~--~~~~~~~~~L~~L~~l  112 (116)
                      -.+|...+.+++.|++. |-...|+|-+.+...+    .+  .+....+||+..|..+
T Consensus        20 ~~LRd~AA~lL~~I~~~-~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l   76 (92)
T PF07571_consen   20 WALRDFAASLLAQICRK-FSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL   76 (92)
T ss_pred             HHHHHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            37999999999999977 6666777666665544    32  3557899999998876

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=85.69  E-value=9.7  Score=26.44  Aligned_cols=67  Identities=16%  Similarity=0.149  Sum_probs=45.4

Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHhccC------CC--chhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         49 RDAIVDAVVMAPEVIRVQLAVCVSNIVKHDF------PG--KWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        49 K~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~------P~--~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      ...+..++.+.++.+|...+..+..+...--      ..  ..+.+.+.+...++.+|++....|-.++..+.+.
T Consensus       133 ~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  133 LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence            4444445555567899999988888876532      11  2477999999999999998888888887776653

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=85.53  E-value=2  Score=21.20  Aligned_cols=28  Identities=18%  Similarity=0.039  Sum_probs=17.3

Q ss_pred             HHHHHHHhhCCCChHHHhHHHHHHHHHH
Q psy16982         86 IVDKVSIYLQNPDATPWFGALLCLYQLV  113 (116)
Q Consensus        86 Ll~~l~~~l~~~~~~~~~~~L~~L~~l~  113 (116)
                      .++.++++++++++..+..++.+|+.++
T Consensus        13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185       13 GLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            4555666666666666666666666554

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=85.00  E-value=13  Score=30.39  Aligned_cols=84  Identities=17%  Similarity=0.177  Sum_probs=50.4

Q ss_pred             ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhH
Q psy16982          6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQ   85 (116)
Q Consensus         6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~   85 (116)
                      +...+++||-.+-++++.+-+             +.+    .-=+.++.+.-+++..||.+....|-.+++.. |+.=+-
T Consensus        35 ~~k~K~Laaq~I~kffk~FP~-------------l~~----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~k   96 (556)
T PF05918_consen   35 SPKEKRLAAQFIPKFFKHFPD-------------LQE----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSK   96 (556)
T ss_dssp             -HHHHHHHHHHHHHHHCC-GG-------------GHH----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHH
T ss_pred             CHHHHHHHHHHHHHHHhhChh-------------hHH----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhH
Confidence            456788888766665554332             221    11246677777778899999888888888875 544588


Q ss_pred             HHHHHHHhhCCCChHH---HhHHHH
Q psy16982         86 IVDKVSIYLQNPDATP---WFGALL  107 (116)
Q Consensus        86 Ll~~l~~~l~~~~~~~---~~~~L~  107 (116)
                      +.+.|+|+|+++++..   +..+|.
T Consensus        97 vaDvL~QlL~tdd~~E~~~v~~sL~  121 (556)
T PF05918_consen   97 VADVLVQLLQTDDPVELDAVKNSLM  121 (556)
T ss_dssp             HHHHHHHHTT---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHH
Confidence            9999999999987643   444553

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope

Probab=84.99  E-value=5.2  Score=22.81  Aligned_cols=41  Identities=24%  Similarity=0.392  Sum_probs=20.5

Q ss_pred             HHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         72 SNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        72 ~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      ..+...+ |+-|..|+..+.+  .+.+......|...|+..+++
T Consensus         6 ~~~~~~~-p~~~~~l~~il~~--~~~~~~~R~~A~i~LKn~I~~   46 (77)
T PF03810_consen    6 KQFQKQN-PGFWQYLLQILSS--NSQDPEVRQLAAILLKNLIKK   46 (77)
T ss_dssp             HHHHHSC-TCHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-hhHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHH
Confidence            3444444 5555544444433  233555555666666655544

Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=84.87  E-value=8.4  Score=28.36  Aligned_cols=74  Identities=8%  Similarity=0.083  Sum_probs=49.6

Q ss_pred             hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982         43 QDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        43 ~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y  116 (116)
                      .....+-+.+.+.+.+.+..++...++.++++.-.+--..||+++..|+-..=+..-.....--+||..++..|
T Consensus       110 ~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y  183 (298)
T PF12719_consen  110 VDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVY  183 (298)
T ss_pred             chHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHH
Confidence            34456777788888888889999999999999877765557999999976543321111112334455555443

>KOG1824|consensus

Probab=84.57  E-value=10  Score=33.06  Aligned_cols=92  Identities=9%  Similarity=0.122  Sum_probs=61.0

Q ss_pred             CCCCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC
Q psy16982          1 MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP   80 (116)
Q Consensus         1 ~~~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P   80 (116)
                      |++.-...+|.+|-+.|-..=.+                .+..-.+.+++.+++++.++..-+++..+.++..++.-   
T Consensus       827 ~s~~s~~~ikvfa~LslGElgr~----------------~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vg---  887 (1233)
T KOG1824|consen  827 QSPKSSDSIKVFALLSLGELGRR----------------KDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVG---  887 (1233)
T ss_pred             hCCCCchhHHHHHHhhhhhhccC----------------CCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcC---
Confidence            34445566777777666433222                12222245777999999999999999999999999875   


Q ss_pred             CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHH
Q psy16982         81 GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLV  113 (116)
Q Consensus        81 ~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~  113 (116)
                       +-|+++|++...+.++ +...|--|..|+++.
T Consensus       888 -nl~~yLpfil~qi~sq-pk~QyLLLhSlkevi  918 (1233)
T KOG1824|consen  888 -NLPKYLPFILEQIESQ-PKRQYLLLHSLKEVI  918 (1233)
T ss_pred             -chHhHHHHHHHHHhcc-hHhHHHHHHHHHHHH
Confidence             4557777777777653 555555555555554

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=84.04  E-value=4.4  Score=30.05  Aligned_cols=65  Identities=14%  Similarity=0.251  Sum_probs=44.2

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchh---HHHHHHHHhhCC----CChHHHhHHHHHHHHHHh
Q psy16982         50 DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWT---QIVDKVSIYLQN----PDATPWFGALLCLYQLVK  114 (116)
Q Consensus        50 ~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp---~Ll~~l~~~l~~----~~~~~~~~~L~~L~~l~~  114 (116)
                      ..++..+.+++..++.+.+.+++.++...-+..=.   +.++.+++.+.+    ++.+....|+.+|..+++
T Consensus       108 ~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~  179 (312)
T PF03224_consen  108 SPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR  179 (312)
T ss_dssp             HHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence            45566666677899999999999999887554444   778888877765    344556889999988875

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=83.54  E-value=7.4  Score=28.51  Aligned_cols=50  Identities=24%  Similarity=0.079  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         65 VQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        65 ~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      .=+..+++.|..+-||+.+.+.+..+.+.+.++-.......|.+|+.++.
T Consensus       168 dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~  217 (262)
T PF14225_consen  168 DFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLP  217 (262)
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhc
Confidence            33566778888887899999999999999999888888889999988764

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=82.30  E-value=3.9  Score=25.35  Aligned_cols=35  Identities=20%  Similarity=0.222  Sum_probs=30.1

Q ss_pred             CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         81 GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        81 ~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      ..-+++++.++.+++.+|....+.+..+|+.++|.
T Consensus        23 ~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~   57 (97)
T PF12755_consen   23 KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV   57 (97)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence            45578888889999999999999999999998874

>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis

Probab=81.97  E-value=5.7  Score=25.77  Aligned_cols=45  Identities=20%  Similarity=0.278  Sum_probs=32.7

Q ss_pred             HHHHHhccCC-CchhHHHHHHHHhhCCC--ChHHHhHHHHHHHHHHhh
Q psy16982         71 VSNIVKHDFP-GKWTQIVDKVSIYLQNP--DATPWFGALLCLYQLVKN  115 (116)
Q Consensus        71 i~~Ia~~d~P-~~Wp~Ll~~l~~~l~~~--~~~~~~~~L~~L~~l~~~  115 (116)
                      +..||..-|- ..+++.+..|...|.+.  +-..++-+|.+|.++++.
T Consensus        22 m~eIa~~t~~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~n   69 (123)
T cd03571          22 MAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKN   69 (123)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Confidence            3444443333 68888999998888765  667888999999988763

A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=81.94  E-value=4.8  Score=21.53  Aligned_cols=54  Identities=19%  Similarity=0.133  Sum_probs=31.6

Q ss_pred             HHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q psy16982          8 PVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNI   74 (116)
Q Consensus         8 ~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~I   74 (116)
                      .+|..|+-.|-+.....-.             ........+=..|+.+|.++++.||...+.+++.|
T Consensus         2 ~vR~~A~~aLg~l~~~~~~-------------~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPE-------------LLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHH-------------HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHH-------------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            5788888888763222111             11112233444555566566679999999888754

...

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=81.32  E-value=2.1  Score=29.70  Aligned_cols=54  Identities=19%  Similarity=0.350  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHhc----cCCCchhHHHHHH-----------HH-hhCCCChHHHhHHHHHHHHHHhh
Q psy16982         62 VIRVQLAVCVSNIVKH----DFPGKWTQIVDKV-----------SI-YLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        62 ~i~~~l~~~i~~Ia~~----d~P~~Wp~Ll~~l-----------~~-~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      +||.....++..|++.    .+.+.||.|+|+-           +. .+.+.++....+++.+|..+++.
T Consensus         1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g   70 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG   70 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc
Confidence            3677788888888887    3447999999988           11 11122445677888888887753

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=80.59  E-value=4.4  Score=26.34  Aligned_cols=36  Identities=11%  Similarity=0.166  Sum_probs=30.2

Q ss_pred             CCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         80 PGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        80 P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      |..-.++++.|...|+..++....-+|.+|.++|.+
T Consensus        33 ~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~   68 (122)
T cd03572          33 VGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEK   68 (122)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhh
Confidence            356778999999999988877778899999999874

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=80.17  E-value=2.9  Score=30.71  Aligned_cols=49  Identities=18%  Similarity=0.196  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHhccCC---CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         65 VQLAVCVSNIVKHDFP---GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        65 ~~l~~~i~~Ia~~d~P---~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      ..++-++.  ...+.|   ..||-++|.++..++..++..+..|+.+|+.++++
T Consensus        98 ~~l~w~v~--~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~  149 (282)
T PF10521_consen   98 HVLSWIVL--SQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEK  149 (282)
T ss_pred             HHHHHHHH--hcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            45555555  233444   69999999999999999999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	116
1z3h_A	968	The Exportin Cse1 In Its Cargo-free, Cytoplasmic St		3e-07
1wa5_C	960	Crystal Structure Of The Exportin Cse1p Complexed W		3e-07

>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State Length = 968

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 1   MMSEVDMPV--RQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVM 58
           +++  ++P+  R AG ++ KN I  +WV++  +   P        +  +I+  IV  ++ 
Sbjct: 43  VIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLP------ANNVELIKKEIVPLMIS 96
Query: 59  APEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
            P  ++VQ+   +S+I   DFP +W  ++  ++  L N D     G L   + + K +
Sbjct: 97  LPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154

>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 960

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 1   MMSEVDMPV--RQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVM 58
           +++  ++P+  R AG ++ KN I  +WV++  +   P        +  +I+  IV  ++ 
Sbjct: 43  VIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLP------ANNVELIKKEIVPLMIS 96
Query: 59  APEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
            P  ++VQ+   +S+I   DFP +W  ++  ++  L N D     G L   + + K +
Sbjct: 97  LPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	116
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	9e-24
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-13
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	1e-10
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	1e-10
1qgr_A	876	Protein (importin beta subunit); transport recepto	7e-09
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	8e-06
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	2e-05

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960

 Score = 93.4 bits (231), Expect = 9e-24
 Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 6/114 (5%)

Query: 3   SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEV 62
           + + +  R AG ++ KN I  +WV++  +        L   +  +I+  IV  ++  P  
Sbjct: 47  TNLPLSTRLAGALFFKNFIKRKWVDENGN------HLLPANNVELIKKEIVPLMISLPNN 100

Query: 63  IRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           ++VQ+   +S+I   DFP +W  ++  ++  L N D     G L   + + K +
Sbjct: 101 LQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 64.4 bits (156), Expect = 1e-13
 Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 12/111 (10%)

Query: 6   DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRV 65
           D P R    + LKN +   +             +        I+   ++ +  +  +IR 
Sbjct: 61  DEPTRSLSGLILKNNVKAHFQ------------NFPNGVTDFIKSECLNNIGDSSPLIRA 108

Query: 66  QLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
            + + ++ I        W  ++ K+   L + D     GA   L ++ ++ 
Sbjct: 109 TVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDS 159

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 56.4 bits (135), Expect = 1e-10
 Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 2/112 (1%)

Query: 3   SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEV 62
               +  R    + LKN + ++   K           +  + K  I+   + A+V     
Sbjct: 51  ENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPR 110

Query: 63  IRVQLAVCVSNIVKHDFP-GKWTQIVDKVSIYLQNPDATPW-FGALLCLYQL 112
           I    A  ++ I   + P G W +++  +               +LL L  +
Sbjct: 111 IANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYM 162

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 56.0 bits (134), Expect = 1e-10
 Identities = 14/117 (11%), Positives = 46/117 (39%), Gaps = 5/117 (4%)

Query: 3   SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEV 62
                  R A  + +KN +T++  + +         ++    +  +++ ++  +      
Sbjct: 47  PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW-LAIDANARREVKNYVLQTLGTETYR 105

Query: 63  IRVQLAVCVSNIVKHDFP-GKWTQIVDKVSIYLQNPDATP--WFGALLCLYQLVKNY 116
                + CV+ I   + P  +W +++ ++   + NP++T       L  +  + ++ 
Sbjct: 106 PS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 161

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 51.0 bits (121), Expect = 7e-09
 Identities = 14/117 (11%), Positives = 46/117 (39%), Gaps = 5/117 (4%)

Query: 3   SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEV 62
                  R A  + +KN +T++  + +         ++    +  +++ ++  +      
Sbjct: 47  PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL-AIDANARREVKNYVLHTLGTETYR 105

Query: 63  IRVQLAVCVSNIVKHDFP-GKWTQIVDKVSIYLQNPDATPWF--GALLCLYQLVKNY 116
                + CV+ I   + P  +W +++ ++   + NP++T       L  +  + ++ 
Sbjct: 106 PS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 161

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204

 Score = 42.3 bits (98), Expect = 8e-06
 Identities = 14/113 (12%), Positives = 45/113 (39%), Gaps = 20/113 (17%)

Query: 9   VRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVM-------APE 61
           VR  G+  L++++  +W              +   +K  +++++++ +            
Sbjct: 63  VRHFGLQILEHVVKFRWNG------------MSRLEKVYLKNSVMELIANGTLNILEEEN 110

Query: 62  VIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114
            I+  L+  V  ++K ++P  W  ++ ++    +  +       +  L +L +
Sbjct: 111 HIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELV-MFILLRLAE 162

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 22/116 (18%)

Query: 6   DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVD---------AV 56
           +M  +  G+  L+N+I  +W              L       I+  +V            
Sbjct: 74  NMNTKYYGLQILENVIKTRWKI------------LPRNQCEGIKKYVVGLIIKTSSDPTC 121

Query: 57  VMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQL 112
           V   +V   +L + +  I+K ++P  W   +  +    +  ++      ++ L  L
Sbjct: 122 VEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNN-MVILKLL 176

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	116
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.89
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.78
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.75
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.74
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.72
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.72
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.7
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.68
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.57
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	99.56
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.54
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.26
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.25
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.3
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	97.13
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	96.95
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	96.86
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	96.65
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	96.38
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	96.22
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	95.87
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	95.67
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	95.45
1qgr_A	876	Protein (importin beta subunit); transport recepto	95.24
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	95.23
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	94.8
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	94.76
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	94.55
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	94.47
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	94.44
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	94.27
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	93.99
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	93.85
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	93.8
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	93.8
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	93.65
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	93.57
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	93.5
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	93.5
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	93.35
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	93.35
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	93.03
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	92.96
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	92.8
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	92.74
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	92.71
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	92.41
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	92.4
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	92.19
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	91.98
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	91.92
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	91.77
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	91.03
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	90.72
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	90.6
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	89.5
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	89.12
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	89.01
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	88.85
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	88.75
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	88.57
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	88.14
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	87.84
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	87.29
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	87.18
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	86.92
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	86.53
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	86.24
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	86.07
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	83.59
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	83.03
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	82.58
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	82.39
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	81.74
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	81.34
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	81.25
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	81.05
1xgw_A	176	Epsin 4; ENTH, enthoprotin, clathrin-associated, e	80.63
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	80.55
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	80.41

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.89  E-value=2.8e-23  Score=169.62  Aligned_cols=109  Identities=25%  Similarity=0.525  Sum_probs=100.4

Q ss_pred             CCCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCC
Q psy16982          2 MSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPG   81 (116)
Q Consensus         2 ~~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~   81 (116)
                      +++.+.++|++|+++|||.|+++|...+.      ...+++++|+.||+.+++++.++++.||++++.+|+.|+++|||+
T Consensus        46 ~~~~~~~vR~~A~i~lkn~i~~~w~~~~~------~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~  119 (960)
T 1wa5_C           46 STNLPLSTRLAGALFFKNFIKRKWVDENG------NHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPD  119 (960)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHHSBCSSS------CBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhcCCCccc------CCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCcc
Confidence            44678899999999999999999986432      136999999999999999999998999999999999999999999


Q ss_pred             chhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982         82 KWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        82 ~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y  116 (116)
                      +||+|++.|++.++++|+..++++|.+|+++|++|
T Consensus       120 ~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~  154 (960)
T 1wa5_C          120 RWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW  154 (960)
T ss_dssp             TCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred             chhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999975

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.78  E-value=5e-19  Score=142.46  Aligned_cols=101  Identities=17%  Similarity=0.311  Sum_probs=95.8

Q ss_pred             CCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCc
Q psy16982          3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGK   82 (116)
Q Consensus         3 ~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~   82 (116)
                      ++.+..+|++|+++|||.|+++|.            .+++++|+.||+.++++|.++++.+|++++.+++.|++.|+|+.
T Consensus        58 ~~~~~~vR~~a~~~Lkn~i~~~w~------------~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~  125 (852)
T 4fdd_A           58 KSEDEPTRSLSGLILKNNVKAHFQ------------NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQN  125 (852)
T ss_dssp             TTSCHHHHHHHHHHHHHHTTTSGG------------GCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             CCCChHHHHHHHHHHHHHHHHccC------------CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccc
Confidence            456889999999999999999997            58999999999999999988888999999999999999999999


Q ss_pred             hhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         83 WTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        83 Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      ||++++.+++.++++|...+++++.+|+.+|+.
T Consensus       126 wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~  158 (852)
T 4fdd_A          126 WPDLLPKLCSLLDSEDYNTCEGAFGALQKICED  158 (852)
T ss_dssp             CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999985

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.75  E-value=1.9e-18  Score=137.54  Aligned_cols=113  Identities=16%  Similarity=0.166  Sum_probs=99.1

Q ss_pred             CCCChHHHHHHHHHhhhhhccccccccCCCCCCccCC-CCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC-
Q psy16982          3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFS-LHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP-   80 (116)
Q Consensus         3 ~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~-i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P-   80 (116)
                      ++.+..+|++|+++|||.|+++|....+.. ...|.. +++++|..||+.+++.|.++++.+|++++.+++.|++.||| 
T Consensus        51 ~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~-~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~  129 (861)
T 2bpt_A           51 ENTKLEGRILAALTLKNELVSKDSVKTQQF-AQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPH  129 (861)
T ss_dssp             TTSCHHHHHHHHHHHHTTTCCSSHHHHHHH-HHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred             CCCChHHHHHHHHHHHhhccCcChHHHHHH-HHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcc
Confidence            446889999999999999999997543210 012455 99999999999999999999899999999999999999999 


Q ss_pred             CchhHHHHHHHHhhCCC-ChHHHhHHHHHHHHHHhhC
Q psy16982         81 GKWTQIVDKVSIYLQNP-DATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        81 ~~Wp~Ll~~l~~~l~~~-~~~~~~~~L~~L~~l~~~y  116 (116)
                      +.||++++.+++.++++ |+..+++++.+|..+++.|
T Consensus       130 ~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~  166 (861)
T 2bpt_A          130 GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESA  166 (861)
T ss_dssp             TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred             cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence            69999999999999998 9999999999999999864

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.74  E-value=1.7e-17  Score=134.74  Aligned_cols=100  Identities=13%  Similarity=0.238  Sum_probs=90.7

Q ss_pred             CCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHhccC
Q psy16982          3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVM---APEVIRVQLAVCVSNIVKHDF   79 (116)
Q Consensus         3 ~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~---~~~~i~~~l~~~i~~Ia~~d~   79 (116)
                      .+.+..+|++|+++|||.|+++|.            .+++++|..||+.|++.+.+   .++.||++++.+++.|+++||
T Consensus        68 ~~~~~~vr~~aa~~L~~~i~~~w~------------~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~  135 (963)
T 2x19_B           68 PDKVPEIQYFGASALHIKISRYWS------------DIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMM  135 (963)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHCGG------------GSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCchHHHHHHHHHHHHHHHhCHH------------hCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhC
Confidence            456889999999999999999996            58999999999999999988   358999999999999999999


Q ss_pred             CCchhHHHHHHHHhhCC-----CChHHHhHHHHHHHHHHh
Q psy16982         80 PGKWTQIVDKVSIYLQN-----PDATPWFGALLCLYQLVK  114 (116)
Q Consensus        80 P~~Wp~Ll~~l~~~l~~-----~~~~~~~~~L~~L~~l~~  114 (116)
                      |+.||++++.+++.+++     +++.....+|.+|..+++
T Consensus       136 p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~e  175 (963)
T 2x19_B          136 PDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPE  175 (963)
T ss_dssp             TTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHH
Confidence            99999999999999976     366678899999998885

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.72  E-value=7e-18  Score=125.85  Aligned_cols=112  Identities=12%  Similarity=0.203  Sum_probs=97.3

Q ss_pred             CCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC-C
Q psy16982          3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP-G   81 (116)
Q Consensus         3 ~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P-~   81 (116)
                      ++.+..+|++|+++|||.|+++|...++.. ...|..+++++|+.||+.|++.|.++++.+ ++++.+|+.|++.|+| +
T Consensus        47 ~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~-~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~  124 (462)
T 1ibr_B           47 PGNSQVARVAAGLQIKNSLTSKDPDIKAQY-QQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN  124 (462)
T ss_dssp             TTSCHHHHHHHHHHHHHHHCCSSHHHHHHH-HHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT
T ss_pred             CCCChHHHHHHHHHHHHhccccchHHHHHH-HhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc
Confidence            346789999999999999999996543210 012457999999999999999999988888 9999999999999999 5


Q ss_pred             chhHHHHHHHHhhCCC--ChHHHhHHHHHHHHHHhhC
Q psy16982         82 KWTQIVDKVSIYLQNP--DATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        82 ~Wp~Ll~~l~~~l~~~--~~~~~~~~L~~L~~l~~~y  116 (116)
                      .||++++.+++.++++  |+..+.+++.+|+.+++.+
T Consensus       125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~  161 (462)
T 1ibr_B          125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI  161 (462)
T ss_dssp             CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhC
Confidence            9999999999999988  8999999999999999864

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=99.72  E-value=3.7e-17  Score=136.77  Aligned_cols=100  Identities=15%  Similarity=0.360  Sum_probs=91.3

Q ss_pred             CCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHHH
Q psy16982          3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMA-------PEVIRVQLAVCVSNIV   75 (116)
Q Consensus         3 ~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~-------~~~i~~~l~~~i~~Ia   75 (116)
                      .+.+..+|++|++.|||.|+++|.            .+++++|+.||+.+++.+.+.       ++.||++++.+++.|+
T Consensus        57 ~s~~~~vR~~A~~~Lk~~I~~~W~------------~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia  124 (1204)
T 3a6p_A           57 KTQVAIVRHFGLQILEHVVKFRWN------------GMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMI  124 (1204)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHSGG------------GSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhcc------------cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHH
Confidence            456889999999999999999996            589999999999999999864       4799999999999999


Q ss_pred             hccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         76 KHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        76 ~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      ++|||++||++++.+++.+++ ++....++|.+|..+++.
T Consensus       125 ~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Ee  163 (1204)
T 3a6p_A          125 KREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAED  163 (1204)
T ss_dssp             HHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHH
T ss_pred             HHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Confidence            999999999999999999976 567789999999999874

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.70  E-value=5.7e-17  Score=133.58  Aligned_cols=98  Identities=15%  Similarity=0.294  Sum_probs=87.7

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHHH
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP---------EVIRVQLAVCVSNI   74 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~---------~~i~~~l~~~i~~I   74 (116)
                      +.+..+|++|+++|||.|+++|.            .+++++|..||+.+++.+.+.+         +.||++++.+++.|
T Consensus        60 s~~~~vr~~aa~~Lk~~i~~~W~------------~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~I  127 (1049)
T 3m1i_C           60 STNPQSKFIALSILDKLITRKWK------------LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQI  127 (1049)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHTGG------------GSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCc------------cCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHH
Confidence            45789999999999999999996            5999999999999999998753         68999999999999


Q ss_pred             HhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         75 VKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        75 a~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      +++|||+.||++++.+++.++ +++.....+|.+|..+++
T Consensus       128 a~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~e  166 (1049)
T 3m1i_C          128 LKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSE  166 (1049)
T ss_dssp             HHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred             HHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHH
Confidence            999999999999999999997 556667788888888775

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.68  E-value=1.1e-16  Score=130.42  Aligned_cols=99  Identities=15%  Similarity=0.335  Sum_probs=84.5

Q ss_pred             CCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhccC
Q psy16982          3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMA---PEVIRVQLAVCVSNIVKHDF   79 (116)
Q Consensus         3 ~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~---~~~i~~~l~~~i~~Ia~~d~   79 (116)
                      .+.+..+|++|+++|||.|+++|.            .+++++|..||+.|++.+.+.   ++.||++++.+++.|++++|
T Consensus        50 ~~~~~~vr~~aa~~L~~~i~~~w~------------~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~  117 (971)
T 2x1g_F           50 LGKSQEVQFFGAITLHSKLMKHWH------------EVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHML  117 (971)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHCGG------------GCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCcHHHHHHHHHHHHHHHHccHh------------hCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcc
Confidence            356789999999999999999996            599999999999999999873   58999999999999999999


Q ss_pred             CCchhHHHHHHHHhhCCC------ChHHHhHHHHHHHHHHh
Q psy16982         80 PGKWTQIVDKVSIYLQNP------DATPWFGALLCLYQLVK  114 (116)
Q Consensus        80 P~~Wp~Ll~~l~~~l~~~------~~~~~~~~L~~L~~l~~  114 (116)
                      | .||++++.+++.++++      ++.....+|.+|..+++
T Consensus       118 p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~E  157 (971)
T 2x1g_F          118 G-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPE  157 (971)
T ss_dssp             C-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHH
T ss_pred             c-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHH
Confidence            9 9999999999999875      56788899999998886

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.57  E-value=1.1e-14  Score=120.64  Aligned_cols=99  Identities=15%  Similarity=0.305  Sum_probs=86.9

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHHH
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMA---------PEVIRVQLAVCVSNI   74 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~---------~~~i~~~l~~~i~~I   74 (116)
                      +.+..+|++|+++|||.|+++|.            .+++++|..||+.+++.+.+.         ++.++++++.+++.|
T Consensus        60 s~~~~vR~faa~~Lk~~I~~~W~------------~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I  127 (1023)
T 4hat_C           60 STNPQSKFIALSILDKLITRKWK------------LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQI  127 (1023)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHGG------------GSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhhh------------cCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHH
Confidence            34679999999999999999996            699999999999999999762         256788899999999


Q ss_pred             HhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         75 VKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        75 a~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      +++|||+.||++++.+++.++++ +..+..+|.+|..+.+.
T Consensus       128 ~~~~~p~~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EE  167 (1023)
T 4hat_C          128 LKQEWPQNWPEFIPELIGSSSSS-VNVCENNMIVLKLLSEE  167 (1023)
T ss_dssp             HHHHTTTTCTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHhChhhchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999754 56688888888887763

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=99.56  E-value=1.5e-14  Score=120.18  Aligned_cols=100  Identities=17%  Similarity=0.321  Sum_probs=88.4

Q ss_pred             CCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhc---------CcHHHHHHHHHHHHH
Q psy16982          3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVM---------APEVIRVQLAVCVSN   73 (116)
Q Consensus         3 ~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~---------~~~~i~~~l~~~i~~   73 (116)
                      .+.+..+|++|+..||+.|+++|.            .+++++|..||+.+++.+.+         .++.++++++.+++.
T Consensus        71 ~s~~~~vR~fAa~~L~~~I~~~W~------------~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~  138 (1073)
T 3gjx_A           71 FSQNMNTKYYGLQILENVIKTRWK------------ILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQ  138 (1073)
T ss_dssp             -CCSHHHHHHHHHHHHHHHHHTGG------------GSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhhhh------------hCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHH
Confidence            356789999999999999999996            59999999999999999975         136788999999999


Q ss_pred             HHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         74 IVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        74 Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      |+++|||+.||++++.+++.+++ ++..+..+|.+|..+.+.
T Consensus       139 I~k~~~P~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EE  179 (1073)
T 3gjx_A          139 ILKQEWPKHWPTFISDIVGASRT-SESLCQNNMVILKLLSEE  179 (1073)
T ss_dssp             HHHHHTTTTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhChhhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998864 456788899999988764

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.54  E-value=7.1e-15  Score=117.23  Aligned_cols=110  Identities=12%  Similarity=0.206  Sum_probs=93.2

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC-Cc
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP-GK   82 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P-~~   82 (116)
                      +.+..+|++|+++|||.+...|....... ...|..+++++|+.||+.+++.|.+++..+ ++++.+++.|++.++| +.
T Consensus        48 ~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~-~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~  125 (876)
T 1qgr_A           48 GNSQVARVAAGLQIKNSLTSKDPDIKAQY-QQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQ  125 (876)
T ss_dssp             TSCHHHHHHHHHHHHHHHCCSSHHHHHHH-HHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTC
T ss_pred             CCCHHHHHHHHHHHHHhccccchHhHHHH-HhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccc
Confidence            35789999999999999976654211000 012457999999999999999998887778 9999999999999999 99


Q ss_pred             hhHHHHHHHHhhCCC--ChHHHhHHHHHHHHHHhh
Q psy16982         83 WTQIVDKVSIYLQNP--DATPWFGALLCLYQLVKN  115 (116)
Q Consensus        83 Wp~Ll~~l~~~l~~~--~~~~~~~~L~~L~~l~~~  115 (116)
                      ||++++.+.+.++++  ++..+.+++.+|..+++.
T Consensus       126 w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~  160 (876)
T 1qgr_A          126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD  160 (876)
T ss_dssp             CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999988  889999999999999875

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.26  E-value=1.4e-11  Score=101.73  Aligned_cols=93  Identities=13%  Similarity=0.156  Sum_probs=80.1

Q ss_pred             ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHh----HHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHHHHh
Q psy16982          6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQ----DKAMIRDAIVDAVVMA-----PEVIRVQLAVCVSNIVK   76 (116)
Q Consensus         6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~----~k~~IK~~ll~~l~~~-----~~~i~~~l~~~i~~Ia~   76 (116)
                      +..+|++|+..||+.|+   .             ++++    ++..||+.+++.+.+.     ++.||++++.+++.|+.
T Consensus        56 ~~~vr~fa~~~L~~~I~---~-------------l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~  119 (980)
T 3ibv_A           56 KPSTRLICLQTLSEKVR---E-------------WNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFL  119 (980)
T ss_dssp             CHHHHHHHHHHHHHHHH---H-------------CCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---h-------------CChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Confidence            78999999999999999   1             6677    9999999999999862     46899999999999999


Q ss_pred             ccCCCchhHHHHHHHHhhCCCCh-HHHhHHHHHHHHHHh
Q psy16982         77 HDFPGKWTQIVDKVSIYLQNPDA-TPWFGALLCLYQLVK  114 (116)
Q Consensus        77 ~d~P~~Wp~Ll~~l~~~l~~~~~-~~~~~~L~~L~~l~~  114 (116)
                      ++||..||++++.+++.+++++. ..+...|.+|..|.+
T Consensus       120 ~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~E  158 (980)
T 3ibv_A          120 QLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGD  158 (980)
T ss_dssp             HHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             HhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHH
Confidence            99999999999999999987665 445566777765554

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.25  E-value=1.1e-05  Score=67.17  Aligned_cols=96  Identities=15%  Similarity=0.218  Sum_probs=80.3

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCC--
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPG--   81 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~--   81 (116)
                      +.+..+|.+|+..|.+.+..                ++++....|+..+++.+.+++..+|...+.+++.|+..-.|.  
T Consensus        59 d~~~~vR~~A~~~L~~l~~~----------------~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~  122 (1230)
T 1u6g_C           59 DKNGEVQNLAVKCLGPLVSK----------------VKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS  122 (1230)
T ss_dssp             CSSHHHHHHHHHHHHHHHTT----------------SCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred             CCCHHHHHHHHHHHHHHHHh----------------CCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence            34678999999999887642                455677889999999998888889999999999999876555  


Q ss_pred             -------chhHHHHHHHHhhC-CCChHHHhHHHHHHHHHHhh
Q psy16982         82 -------KWTQIVDKVSIYLQ-NPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        82 -------~Wp~Ll~~l~~~l~-~~~~~~~~~~L~~L~~l~~~  115 (116)
                             .||+++|.+++.+. +++.....+++.+|..+++.
T Consensus       123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~  164 (1230)
T 1u6g_C          123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR  164 (1230)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence                   49999999999998 57888999999999999864

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.30  E-value=0.0025  Score=53.21  Aligned_cols=100  Identities=11%  Similarity=0.080  Sum_probs=80.3

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCch
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKW   83 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~W   83 (116)
                      +.|..+|..|.--|.+.+.....            .+++..-..+-..+++.|.+.+..+|...+.+++.++..--+..+
T Consensus        17 s~d~~~R~~A~~~L~~~l~~~~~------------~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~   84 (1230)
T 1u6g_C           17 SSDKDFRFMATNDLMTELQKDSI------------KLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV   84 (1230)
T ss_dssp             CSSHHHHHHHHHHHHHHTSSSCC------------SCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHccccc------------CCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence            46789999999999888765422            344455556677788988877789999999999999986544688


Q ss_pred             hHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         84 TQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        84 p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      +.+++.+...+.+++.....++..+|..+++.
T Consensus        85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~  116 (1230)
T 1u6g_C           85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGE  116 (1230)
T ss_dssp             HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Confidence            99999999999888887788899999888753

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=97.13  E-value=0.0013  Score=48.41  Aligned_cols=99  Identities=10%  Similarity=-0.010  Sum_probs=73.8

Q ss_pred             CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHH-HHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhccCC--
Q psy16982          5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKA-MIRDAIVDAVVMA-PEVIRVQLAVCVSNIVKHDFP--   80 (116)
Q Consensus         5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~-~IK~~ll~~l~~~-~~~i~~~l~~~i~~Ia~~d~P--   80 (116)
                      .+..+|..|+..|++.+...+..           .+..-.+. .+-..|+++|.+. +..+|...+.++..++..+-.  
T Consensus        32 ~~~~~r~~A~~~L~~l~~~~~~~-----------~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~  100 (450)
T 2jdq_A           32 KSPEQQLSATQKFRKLLSKEPNP-----------PIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT  100 (450)
T ss_dssp             SCHHHHHHHHHHHHHHHHSSSSC-----------CHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCC-----------cHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            46789999999999988765432           12111222 4556677777777 689999999999999975311  


Q ss_pred             Cc--hhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         81 GK--WTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        81 ~~--Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      ..  ..++++.+++.+.++++.....++.+|..++.
T Consensus       101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~  136 (450)
T 2jdq_A          101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAG  136 (450)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcc
Confidence            11  25799999999999999999999999988874

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=96.95  E-value=0.0062  Score=46.13  Aligned_cols=111  Identities=12%  Similarity=-0.023  Sum_probs=76.6

Q ss_pred             CCChHHHHHHHHHhhhhhcccccc--------------ccCCCC------C---CccCCCCHhHHHHHHHHHHHHHhcCc
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVE--------------KEVDPG------T---PLAFSLHEQDKAMIRDAIVDAVVMAP   60 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~--------------~~~~~~------~---~~~~~i~~~~k~~IK~~ll~~l~~~~   60 (116)
                      +.+..+|..|+-.|.+.....-..              .++...      .   .....+++..+..+...+.+++.+++
T Consensus        98 ~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~  177 (588)
T 1b3u_A           98 VEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT  177 (588)
T ss_dssp             SSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSC
T ss_pred             CchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCC
Confidence            446789999988888876543110              000000      0   00123455666677777777767777


Q ss_pred             HHHHHHHHHHHHHHHhccCCC-chhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         61 EVIRVQLAVCVSNIVKHDFPG-KWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        61 ~~i~~~l~~~i~~Ia~~d~P~-~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      ..+|...+.+++.++..--++ .+++++|.+...+++++......++.+|..+++
T Consensus       178 ~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~  232 (588)
T 1b3u_A          178 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ  232 (588)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            899999999999999774222 358899999999988888888888888888775

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=96.86  E-value=0.014  Score=39.97  Aligned_cols=91  Identities=15%  Similarity=0.159  Sum_probs=69.5

Q ss_pred             CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcc----C-
Q psy16982          5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHD----F-   79 (116)
Q Consensus         5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d----~-   79 (116)
                      ....+|..|.-.|++.+...              .+     ..+=..++..|.+..+.+|......|..++..-    + 
T Consensus       110 ~~~~vr~~a~~aL~~~~~~~--------------~~-----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~  170 (242)
T 2qk2_A          110 KKPNVVTALREAIDAIYAST--------------SL-----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN  170 (242)
T ss_dssp             CCHHHHHHHHHHHHHHHTTS--------------CH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred             CCHHHHHHHHHHHHHHHHcC--------------CH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence            35678888888888887631              11     123356677777777899999999999976441    2 


Q ss_pred             CCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         80 PGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        80 P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      ...+|.++|.++..+...+......+..++..+++
T Consensus       171 ~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          171 KKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            25789999999999999999888999999988875

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=96.65  E-value=0.011  Score=46.05  Aligned_cols=111  Identities=13%  Similarity=0.157  Sum_probs=77.1

Q ss_pred             CCChHHHHHHHHHhhhhhcccccc----------ccCCCCC--------CccCCCCHhHHHHHHHHHHHHHhcCcHHHHH
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVE----------KEVDPGT--------PLAFSLHEQDKAMIRDAIVDAVVMAPEVIRV   65 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~----------~~~~~~~--------~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~   65 (116)
                      +.+..+|.++.+++++..+..-..          +-.....        ......+++.-..+-..+..++.+.++.||.
T Consensus        60 s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk  139 (591)
T 2vgl_B           60 TDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRK  139 (591)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHH
Confidence            456788888888888776531110          0000000        0000123334445555677777777789999


Q ss_pred             HHHHHHHHHHhccCCCchh--HHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         66 QLAVCVSNIVKHDFPGKWT--QIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        66 ~l~~~i~~Ia~~d~P~~Wp--~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      ..+.++..|.+. .|+.++  ++++.+.++++++|+..+.+++.+|..+++.
T Consensus       140 ~A~~al~~i~~~-~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          140 TAAVCVAKLHDI-NAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             HHHHHHHHHHHS-SCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhh-ChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence            999999999996 498888  5999999999999999999999999998763

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=96.38  E-value=0.029  Score=38.36  Aligned_cols=98  Identities=11%  Similarity=0.101  Sum_probs=69.3

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhc---cC
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVV-MAPEVIRVQLAVCVSNIVKH---DF   79 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~-~~~~~i~~~l~~~i~~Ia~~---d~   79 (116)
                      +.+...|..|+..|...+..+-..            ...+. ..+-..|...+. +.+..+|...+.+++.++..   +|
T Consensus        26 s~~w~~R~~a~~~L~~l~~~~~~~------------~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~   92 (242)
T 2qk2_A           26 EKKWTLRKESLEVLEKLLTDHPKL------------ENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF   92 (242)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHCSSB------------CCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             cCCHHHHHHHHHHHHHHHccCCCC------------CCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence            457789999999999888763221            11111 234445666674 66678888888888888854   33


Q ss_pred             CCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         80 PGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        80 P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      -...+.++|.|+..+.+.+......+..+|..+++
T Consensus        93 ~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~  127 (242)
T 2qk2_A           93 SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA  127 (242)
T ss_dssp             HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            34678899999999888888778888888887765

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=96.22  E-value=0.034  Score=42.00  Aligned_cols=55  Identities=9%  Similarity=-0.145  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         61 EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        61 ~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      ..+|...+.++..++..--+..++++++.+.+.++++++.....++.+|..+++.
T Consensus       140 ~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~  194 (588)
T 1b3u_A          140 FTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKV  194 (588)
T ss_dssp             HHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            5677777777777776532357889999999999888998889999999988753

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=95.87  E-value=0.1  Score=34.39  Aligned_cols=91  Identities=16%  Similarity=0.160  Sum_probs=66.5

Q ss_pred             ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHH-----HHHHHHHhcCcHHHHHHHHHHHHHHHhccCC
Q psy16982          6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIR-----DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP   80 (116)
Q Consensus         6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK-----~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P   80 (116)
                      +..+|..|+-.|.|.....                 ++.+..+.     ..|+.+|.+.+..++...+.++..++..+ |
T Consensus        67 ~~~v~~~a~~~L~~l~~~~-----------------~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~  128 (210)
T 4db6_A           67 NEQILQEALWALSNIASGG-----------------NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-N  128 (210)
T ss_dssp             CHHHHHHHHHHHHHHTTSC-----------------HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-H
T ss_pred             CHHHHHHHHHHHHHHhcCC-----------------cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC-H
Confidence            5678888888888875321                 22222222     35666666677899999999999998743 2


Q ss_pred             Cc-----hhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         81 GK-----WTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        81 ~~-----Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      +.     =.+.++.+++.+.+++......++.+|..++.
T Consensus       129 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A          129 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            22     24578999999999999999999999998875

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=95.67  E-value=0.035  Score=36.67  Aligned_cols=94  Identities=18%  Similarity=0.137  Sum_probs=67.8

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHH-HHH----HHHHHHHHhcCcHHHHHHHHHHHHHHHhcc
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDK-AMI----RDAIVDAVVMAPEVIRVQLAVCVSNIVKHD   78 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k-~~I----K~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d   78 (116)
                      +.+..+|..|+-.|.|.....                 ++.+ ..+    =..|+++|.+++..++...+.++..|+..+
T Consensus        23 s~~~~v~~~a~~~L~~l~~~~-----------------~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~   85 (210)
T 4db6_A           23 SPDQQELQSALRKLSQIASGG-----------------NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG   85 (210)
T ss_dssp             CSCHHHHHHHHHHHHHHHTSC-----------------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             CCCHHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            457789999999999986432                 1112 222    245666666677899999999999998643


Q ss_pred             CCC----chhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         79 FPG----KWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        79 ~P~----~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      -..    ...+.++.++..++++|+.....++.+|..++.
T Consensus        86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  125 (210)
T 4db6_A           86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  125 (210)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHc
Confidence            111    123478999999999999999999999988874

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=95.45  E-value=0.13  Score=37.51  Aligned_cols=68  Identities=9%  Similarity=-0.022  Sum_probs=53.3

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHhccC----CCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         48 IRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDF----PGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        48 IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~----P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      +-..+.+.+.+.+..+|.....+++.|+..--    ...-++++|.++..+.++++.....+..+|..+++.
T Consensus       367 ~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            33444455555667899999999999986422    234589999999999999999999999999999874

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=95.24  E-value=0.027  Score=44.78  Aligned_cols=90  Identities=16%  Similarity=0.206  Sum_probs=67.1

Q ss_pred             CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhcc----
Q psy16982          5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMA--PEVIRVQLAVCVSNIVKHD----   78 (116)
Q Consensus         5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~--~~~i~~~l~~~i~~Ia~~d----   78 (116)
                      .+..+|+.|..+|++.-.                    +....+...|++.+.+.  +..+|...+.++......+    
T Consensus        13 ~d~~~r~~A~~~L~~~~~--------------------~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~   72 (876)
T 1qgr_A           13 PDRLELEAAQKFLERAAV--------------------ENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDI   72 (876)
T ss_dssp             SCHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred             CCHHHHHHHHHHHHHHHh--------------------cChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHh
Confidence            467899999999988321                    12346778899999875  3688999999999876544    


Q ss_pred             ---CCCchhHHHHH--------HHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         79 ---FPGKWTQIVDK--------VSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        79 ---~P~~Wp~Ll~~--------l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                         ++..|+.+-+.        +++.+.++++.. ..+..++..+++.
T Consensus        73 ~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~  119 (876)
T 1qgr_A           73 KAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACA  119 (876)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHH
T ss_pred             HHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHh
Confidence               34678876666        888888777666 8888888887753

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=95.23  E-value=0.11  Score=40.39  Aligned_cols=55  Identities=15%  Similarity=0.087  Sum_probs=43.2

Q ss_pred             cCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         58 MAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        58 ~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      ++++.+|...   +..++..--|+-++.+++.+..++.+.++.....|..++..+++.
T Consensus        97 ~~n~~ir~~A---L~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~  151 (591)
T 2vgl_B           97 DPNPLIRALA---VRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI  151 (591)
T ss_dssp             SSSHHHHHHH---HHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHH---HHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh
Confidence            3446677554   445555546678999999999999999999999999999998874

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=94.80  E-value=0.079  Score=35.53  Aligned_cols=93  Identities=14%  Similarity=0.117  Sum_probs=67.7

Q ss_pred             CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHH----HHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC
Q psy16982          5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMI----RDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP   80 (116)
Q Consensus         5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~I----K~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P   80 (116)
                      .+..+|..|+-.|.|.....-.                ..+..+    =..|++.|.+.+..++...+.++..++..+ |
T Consensus        14 ~~~~~~~~a~~~L~~l~~~~~~----------------~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~   76 (252)
T 4hxt_A           14 TDSETQKEAARDLAEIASGPAS----------------AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-D   76 (252)
T ss_dssp             SCHHHHHHHHHHHHHHHTSCHH----------------HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-H
T ss_pred             CCHHHHHHHHHHHHHHhcCCcH----------------HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-h
Confidence            3478999999999998765431                111222    234556666667899999999999998763 2


Q ss_pred             Cch-----hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         81 GKW-----TQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        81 ~~W-----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      ..-     .+.++.++..+.++++.....++.+|..++.
T Consensus        77 ~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~  115 (252)
T 4hxt_A           77 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS  115 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            111     1478999999999999999999999998873

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=94.76  E-value=0.46  Score=37.60  Aligned_cols=101  Identities=16%  Similarity=0.175  Sum_probs=67.8

Q ss_pred             ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhc---cCC
Q psy16982          6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMA--PEVIRVQLAVCVSNIVKH---DFP   80 (116)
Q Consensus         6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~--~~~i~~~l~~~i~~Ia~~---d~P   80 (116)
                      +..+|..|...|...+.. +...         ..+-......|-..+++++.++  +..+|.....++..++..   .+.
T Consensus       148 ~~~~r~~al~~l~~l~~~-~~~~---------~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~  217 (861)
T 2bpt_A          148 PENVKRASLLALGYMCES-ADPQ---------SQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNME  217 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHT-SSTT---------SSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHc-CChh---------hhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            456666666666555543 2210         0011233455666777777776  578999999998887532   222


Q ss_pred             --CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982         81 --GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        81 --~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y  116 (116)
                        ..|+.+++.+.+.+++++......++.+|..+++.|
T Consensus       218 ~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~  255 (861)
T 2bpt_A          218 REGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY  255 (861)
T ss_dssp             SHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence              247889999999998889998999999999988753

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=94.55  E-value=0.078  Score=35.89  Aligned_cols=93  Identities=19%  Similarity=0.195  Sum_probs=66.8

Q ss_pred             CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHH----HHHHHHHhcCcHHHHHHHHHHHHHHHhccCC
Q psy16982          5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIR----DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP   80 (116)
Q Consensus         5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK----~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P   80 (116)
                      .+..+|..|+-.|++.+...-                +..+..++    ..|++.|.+.+..++...+.++..++..+ |
T Consensus        24 ~~~~~~~~a~~~L~~~l~~~~----------------~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~   86 (252)
T 4db8_A           24 DDMQEQLSATRKFSQILSDGN----------------EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-N   86 (252)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHH----------------HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-H
T ss_pred             CCHHHHHHHHHHHHHHHcCCC----------------chHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-H
Confidence            456789999999988877611                11122333    34555666666889999999999998743 2


Q ss_pred             Cch-----hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         81 GKW-----TQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        81 ~~W-----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      ..-     .+.++.+++.+.++++.....++.+|..++.
T Consensus        87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  125 (252)
T 4db8_A           87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  125 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence            211     2478999999999999999999999988764

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=94.47  E-value=0.083  Score=41.39  Aligned_cols=64  Identities=11%  Similarity=0.121  Sum_probs=43.1

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982         50 DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        50 ~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y  116 (116)
                      ..++.++.+++..||....+++..++..   .++.++++.+...+.+.|.+.+..+...+..++.+|
T Consensus       353 ~~i~~~l~d~d~~Ir~~alelL~~l~~~---~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~  416 (618)
T 1w63_A          353 STIVDCLKDLDVSIKRRAMELSFALVNG---NNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKY  416 (618)
T ss_dssp             HHHHHGGGSSCHHHHHHHHHHHHHHCCS---SSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHccCCChhHHHHHHHHHHHHccc---ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence            3556666666667777777777777664   356677777777776666777777777777777665

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=94.44  E-value=0.4  Score=38.46  Aligned_cols=67  Identities=6%  Similarity=0.000  Sum_probs=53.1

Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHhc----cCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         49 RDAIVDAVVMAPEVIRVQLAVCVSNIVKH----DFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        49 K~~ll~~l~~~~~~i~~~l~~~i~~Ia~~----d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      =..++.++.++...||...+.+++.++..    +....-+++++.++..+.++++.....+..+|..+++.
T Consensus       402 l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~  472 (852)
T 4fdd_A          402 IPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE  472 (852)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            34566666667789999999999998874    22345578999999999888888888999999888863

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=94.27  E-value=0.04  Score=41.85  Aligned_cols=95  Identities=15%  Similarity=0.174  Sum_probs=67.0

Q ss_pred             CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHH----HHHHHHHhcC-cHHHHHHHHHHHHHHHhcc-
Q psy16982          5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIR----DAIVDAVVMA-PEVIRVQLAVCVSNIVKHD-   78 (116)
Q Consensus         5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK----~~ll~~l~~~-~~~i~~~l~~~i~~Ia~~d-   78 (116)
                      .+..+|..|+..|++.+...-..           .+    +..++    ..|+++|.+. +..++...+.++..|+..+ 
T Consensus        99 ~~~~~~~~A~~~L~~ll~~~~~~-----------~~----~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~  163 (530)
T 1wa5_B           99 DDMQEQLSATVKFRQILSREHRP-----------PI----DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS  163 (530)
T ss_dssp             SSHHHHHHHHHHHHHHTCCSSSC-----------SH----HHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCc-----------cH----HHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence            35788999999999988652110           11    22333    3445555555 5789999999999999853 


Q ss_pred             -CCCch--hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         79 -FPGKW--TQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        79 -~P~~W--p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                       ....+  ++.++.++..+.++++.....++.+|..++.
T Consensus       164 ~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~  202 (530)
T 1wa5_B          164 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAG  202 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence             11122  4678899999998899999999999998874

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=93.99  E-value=0.15  Score=40.16  Aligned_cols=73  Identities=11%  Similarity=0.132  Sum_probs=56.1

Q ss_pred             HhHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHhccCCCchh--HHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         42 EQDKAMIRDAIVDAV--VMAPEVIRVQLAVCVSNIVKHDFPGKWT--QIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        42 ~~~k~~IK~~ll~~l--~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp--~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      ++--+.+-..+.+++  .+.++.||+..+.++..+.+.+ |+.=|  ++++.+..++.+.|+..+.+++.+|..+++.
T Consensus       141 ~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~  217 (621)
T 2vgl_A          141 REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK  217 (621)
T ss_dssp             HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence            444455556667777  5666899999999999999864 65444  6677777888888998899999999998863

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=93.85  E-value=1.1  Score=31.07  Aligned_cols=100  Identities=5%  Similarity=0.029  Sum_probs=66.0

Q ss_pred             CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC-Cc-
Q psy16982          5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP-GK-   82 (116)
Q Consensus         5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P-~~-   82 (116)
                      .+..+|..|+-.+......-=..           .+...--..+=..+++.+.+....|+.++..++..|+..--| .. 
T Consensus        73 ~n~~v~~~A~~al~~la~~l~~~-----------~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~  141 (249)
T 2qk1_A           73 ANIQAVALAAQSVELICDKLKTP-----------GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS  141 (249)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHCTT-----------TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT
T ss_pred             CCHHHHHHHHHHHHHHHHhcccc-----------cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC
Confidence            35567777777776665321000           222111122333555555555578999999999999886423 11 


Q ss_pred             --hhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         83 --WTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        83 --Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                        =+.+++.|+..+++.++....+++.+|..+++.
T Consensus       142 ~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~  176 (249)
T 2qk1_A          142 GRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE  176 (249)
T ss_dssp             CTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence              458999999999999999999999999988864

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=93.80  E-value=0.47  Score=35.76  Aligned_cols=98  Identities=11%  Similarity=0.069  Sum_probs=68.0

Q ss_pred             CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHhccCCCch
Q psy16982          5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP-EVIRVQLAVCVSNIVKHDFPGKW   83 (116)
Q Consensus         5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~-~~i~~~l~~~i~~Ia~~d~P~~W   83 (116)
                      .+..+|..|+..|++.....-..           ....-....+=..|+++|.+.+ ..++...+.++..|+... |+.-
T Consensus        86 ~~~~~~~~A~~~L~~l~s~~~~~-----------~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~  153 (528)
T 4b8j_A           86 DDNNLQLEATTQFRKLLSIERSP-----------PIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENT  153 (528)
T ss_dssp             SCHHHHHHHHHHHHHHHTCSSSC-----------CHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCc-----------hHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHH
Confidence            36789999999999987643210           1111111122235566666665 789999999999999842 2111


Q ss_pred             h-----HHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         84 T-----QIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        84 p-----~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      .     +.++.++..+.++++.....++.+|..++.
T Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~  189 (528)
T 4b8j_A          154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAG  189 (528)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence            1     488999999999999999999999998874

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=93.80  E-value=0.22  Score=36.29  Aligned_cols=93  Identities=14%  Similarity=0.096  Sum_probs=65.1

Q ss_pred             ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHH----HHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCC
Q psy16982          6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAM----IRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPG   81 (116)
Q Consensus         6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~----IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~   81 (116)
                      +..+|..|+-.|.|.....-                +..+..    +=..|++.|.+.+..+|...+.+++.++..--|.
T Consensus       289 ~~~vr~~a~~~L~~l~~~~~----------------~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~  352 (450)
T 2jdq_A          289 KESIKKEACWTISNITAGNR----------------AQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAE  352 (450)
T ss_dssp             SHHHHHHHHHHHHHHTTSCH----------------HHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHH
T ss_pred             CHHHHHHHHHHHHHHHcCCH----------------HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHH
Confidence            56788888888887764211                111112    2235666666777899999999999998752232


Q ss_pred             ch-----hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         82 KW-----TQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        82 ~W-----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      .-     .++++.|++.+.+++...+..++.+|..+++
T Consensus       353 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  390 (450)
T 2jdq_A          353 QIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR  390 (450)
T ss_dssp             HHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            21     2478899999999898888899999888775

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=93.65  E-value=0.25  Score=33.03  Aligned_cols=94  Identities=16%  Similarity=0.096  Sum_probs=66.5

Q ss_pred             CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHH----HHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC
Q psy16982          5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAM----IRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP   80 (116)
Q Consensus         5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~----IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P   80 (116)
                      .+..+|..|+-.|.|.....-.                ..+..    +=..|++.+.+.+..++...+.++..++..+ |
T Consensus       140 ~~~~~~~~a~~~L~~l~~~~~~----------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~  202 (252)
T 4hxt_A          140 TDSEVQKEAARALANIASGPDE----------------AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-T  202 (252)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHH----------------HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-H
T ss_pred             CCHHHHHHHHHHHHHHHcCCHH----------------HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-H
Confidence            3467888888888887653211                11122    2245566666666899999999999999743 2


Q ss_pred             Cc-----hhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         81 GK-----WTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        81 ~~-----Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      ..     =.+.++.+++.+.++++.....++.+|..++..
T Consensus       203 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  242 (252)
T 4hxt_A          203 SAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG  242 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence            21     135789999999999999999999999998864

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=93.57  E-value=0.42  Score=31.46  Aligned_cols=56  Identities=11%  Similarity=0.000  Sum_probs=33.6

Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         52 IVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        52 ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      |++.+.+++..+|...+.++..+..       |+.++.|...++++++.....+..+|..+..
T Consensus       148 L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~  203 (211)
T 3ltm_A          148 LIKALKDEDGWVRQSAADALGEIGG-------ERVRAAMEKLAETGTGFARKVAVNYLETHKS  203 (211)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHCS-------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhCc-------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            3444444446677777766666632       5667777777766677666777777665543

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=93.50  E-value=0.14  Score=34.52  Aligned_cols=92  Identities=18%  Similarity=0.205  Sum_probs=64.9

Q ss_pred             CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhH-HHHHH----HHHHHHHhcCcHHHHHHHHHHHHHHHhccC
Q psy16982          5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQD-KAMIR----DAIVDAVVMAPEVIRVQLAVCVSNIVKHDF   79 (116)
Q Consensus         5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~-k~~IK----~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~   79 (116)
                      .+..+|..|+-.|.|.....                 +.. ...++    ..|+++|.+.+..++...+.++..++..+ 
T Consensus       108 ~~~~v~~~a~~~L~~l~~~~-----------------~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-  169 (252)
T 4db8_A          108 PNEQILQEALWALSNIASGG-----------------NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-  169 (252)
T ss_dssp             SCHHHHHHHHHHHHHHTTSC-----------------HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-
T ss_pred             CCHHHHHHHHHHHHHhhcCC-----------------chHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-
Confidence            35678888888888874321                 111 22333    34555555566899999999999999754 


Q ss_pred             CCch-----hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         80 PGKW-----TQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        80 P~~W-----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      |..-     .+.++.+++.+.++++.....++.+|..++.
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  209 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  209 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence            2222     3568899999999999999999999998873

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=93.50  E-value=0.89  Score=32.51  Aligned_cols=93  Identities=11%  Similarity=0.073  Sum_probs=65.9

Q ss_pred             CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHH-HHHH----HHHHHHHhcC-cHHHHHHHHHHHHHHHhcc
Q psy16982          5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDK-AMIR----DAIVDAVVMA-PEVIRVQLAVCVSNIVKHD   78 (116)
Q Consensus         5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k-~~IK----~~ll~~l~~~-~~~i~~~l~~~i~~Ia~~d   78 (116)
                      .+..+|..|+-.|-|....+-                 +.+ ..++    ..|+.+|.+. +..++...+.+|+.|++..
T Consensus        94 ~~~~vr~~Aa~~Lg~ia~~n~-----------------~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~  156 (296)
T 1xqr_A           94 GAAGLRWRAAQLIGTCSQNVA-----------------AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQ  156 (296)
T ss_dssp             SSHHHHHHHHHHHHHHHTTCH-----------------HHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHhCCH-----------------HHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCC
Confidence            466889999988888775422                 112 2222    3556666654 5789999999999998753


Q ss_pred             CCC--ch--hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         79 FPG--KW--TQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        79 ~P~--~W--p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      -|.  ..  .+.++.|+..+.++|......+..+|..++.
T Consensus       157 ~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~  196 (296)
T 1xqr_A          157 EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV  196 (296)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            221  22  2478889999999999888889999988874

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=93.35  E-value=0.45  Score=36.25  Aligned_cols=100  Identities=12%  Similarity=0.035  Sum_probs=67.5

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHhccCCC-
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP-EVIRVQLAVCVSNIVKHDFPG-   81 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~-~~i~~~l~~~i~~Ia~~d~P~-   81 (116)
                      +.+...+..|...+|+.+.+.-.           +.+..=.+..+=..|+++|...+ +.++...+.++..|+..+-.. 
T Consensus        87 s~d~~~q~~a~~~~rklLs~~~~-----------~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~  155 (529)
T 3tpo_A           87 SNNLESQLQATQAARKLLSREKQ-----------PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  155 (529)
T ss_dssp             SSCHHHHHHHHHHHHHHHTSSSC-----------CCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCCC-----------chHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            34667888888999988754221           12221122222234555554444 789999999999999764211 


Q ss_pred             ---chhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         82 ---KWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        82 ---~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                         -=.+.+|.|+.++.+++......++.+|..|+.
T Consensus       156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~  191 (529)
T 3tpo_A          156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG  191 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence               112478999999999999999999999988863

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=93.35  E-value=0.62  Score=35.39  Aligned_cols=95  Identities=14%  Similarity=0.120  Sum_probs=68.0

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHH----HHHHHhcCc-HHHHHHHHHHHHHHHhcc
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDA----IVDAVVMAP-EVIRVQLAVCVSNIVKHD   78 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~----ll~~l~~~~-~~i~~~l~~~i~~Ia~~d   78 (116)
                      +.+...+.-|...+|+...+.-+           +++    .+.|+..    |+++|...+ +.++...+.++..||...
T Consensus        68 s~d~~~q~~a~~~~rklls~e~~-----------ppi----~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~  132 (510)
T 3ul1_B           68 SNNLESQLQATQAARKLLSREKQ-----------PPI----DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT  132 (510)
T ss_dssp             SSCHHHHHHHHHHHHHHHTCSSC-----------CCH----HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCC-----------chH----HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence            45678888899999998875322           122    2445554    445554444 689999999999998753


Q ss_pred             CCCch-----hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         79 FPGKW-----TQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        79 ~P~~W-----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                       ++.=     .+.+|.++.++.+++.+....++.+|..|+.
T Consensus       133 -~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~  172 (510)
T 3ul1_B          133 -SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG  172 (510)
T ss_dssp             -HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence             2111     1368999999999999999999999998864

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=93.03  E-value=0.73  Score=36.20  Aligned_cols=94  Identities=14%  Similarity=0.177  Sum_probs=62.6

Q ss_pred             CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhccCCCch
Q psy16982          5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVV-MAPEVIRVQLAVCVSNIVKHDFPGKW   83 (116)
Q Consensus         5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~-~~~~~i~~~l~~~i~~Ia~~d~P~~W   83 (116)
                      .+.++|..|.-.|...+..+-.               .+.-+..+..++.+|. +++..||....+++..++..+   ++
T Consensus       341 ~~~niry~aL~~l~~l~~~~~~---------------~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~---Nv  402 (621)
T 2vgl_A          341 RETNLRYLALESMCTLASSEFS---------------HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRS---NA  402 (621)
T ss_dssp             SCHHHHHHHHHHHHHHTTCTTT---------------HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH---HH
T ss_pred             CCcchHHHHHHHHHHHHhccCc---------------HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh---hH
Confidence            3556666666666655544310               1112334566777777 677778888888888887653   68


Q ss_pred             hHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982         84 TQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        84 p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y  116 (116)
                      .+++.++...+...|.+.+..+...+..++.+|
T Consensus       403 ~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~  435 (621)
T 2vgl_A          403 QQIVAEMLSYLETADYSIREEIVLKVAILAEKY  435 (621)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence            888888888887777777777777777777664

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=92.96  E-value=0.52  Score=32.69  Aligned_cols=68  Identities=12%  Similarity=0.062  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC---C----ch-hHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         47 MIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP---G----KW-TQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        47 ~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P---~----~W-p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      .+=+.|+.+|.+...++|.+...+|+.++.. .+   .    .- |+++|.+.+.+..++...+..|..||..+++.
T Consensus       146 ~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~-~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~  221 (249)
T 2qk1_A          146 DMLKDILEHMKHKTPQIRMECTQLFNASMKE-EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI  221 (249)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH-CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHH-cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            3555677888777789999999999998865 23   2    35 89999999999999999999999999998863

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=92.80  E-value=0.18  Score=39.52  Aligned_cols=68  Identities=9%  Similarity=0.202  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         46 AMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        46 ~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      ..+-..+..+|.+.++.||+..+.++..|.+.+ |+.=+++++.+..++.+.|+..+.+++.+|..+++
T Consensus       141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~  208 (618)
T 1w63_A          141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCE  208 (618)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHH
Confidence            444556667777777899999999999998864 65555677777788888888888888888888764

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=92.74  E-value=0.9  Score=32.31  Aligned_cols=75  Identities=11%  Similarity=0.057  Sum_probs=56.8

Q ss_pred             CCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982         39 SLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        39 ~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y  116 (116)
                      .+++.+-..+=-.|++-++++...+|.+.-.++..+... ||  =.-+++.+.+.+.+.|.....++|.++..+.++|
T Consensus       124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-~~--~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~  198 (266)
T 2of3_A          124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-VG--PLKMTPMLLDALKSKNARQRSECLLVIEYYITNA  198 (266)
T ss_dssp             CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-HC--HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-CC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence            577777666666777777777778998888888888765 45  1226777777888888888899999998888764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=92.71  E-value=0.31  Score=36.74  Aligned_cols=93  Identities=17%  Similarity=0.153  Sum_probs=67.1

Q ss_pred             ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHH----HHHHHHHhcCcHHHHHHHHHHHHHHHhccCCC
Q psy16982          6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIR----DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPG   81 (116)
Q Consensus         6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK----~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~   81 (116)
                      +..+|..|+-.|.|.....-                +..+..+.    ..|+..|.+.+..++...+.+++.++...-|.
T Consensus       342 ~~~v~~~A~~~L~nl~~~~~----------------~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~  405 (528)
T 4b8j_A          342 KKSIKKEACWTISNITAGNK----------------DQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHD  405 (528)
T ss_dssp             CHHHHHHHHHHHHHHHTSCH----------------HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             cHHHHHHHHHHHHHHHCCCH----------------HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHH
Confidence            56788888888888765211                11122222    45666676777899999999999998873333


Q ss_pred             chh-----HHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         82 KWT-----QIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        82 ~Wp-----~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      .-+     +.++.++..+.++|+..+..++.+|..+++
T Consensus       406 ~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~  443 (528)
T 4b8j_A          406 QIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK  443 (528)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            332     467889999999999999999999998876

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=92.41  E-value=0.31  Score=30.01  Aligned_cols=54  Identities=9%  Similarity=0.035  Sum_probs=33.1

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHH
Q psy16982         50 DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLY  110 (116)
Q Consensus        50 ~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~  110 (116)
                      ..|+.+|.+++..+|...+.++..+..       ++.++.|...+.++|+.....+..+|.
T Consensus        76 ~~L~~~L~d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~d~~~~vr~~A~~aL~  129 (131)
T 1te4_A           76 EPLIKLLEDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFARKVAVNYLE  129 (131)
T ss_dssp             HHHHHHHHHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            344555555556677777777766642       456666777776666666666665554

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=92.40  E-value=0.12  Score=33.40  Aligned_cols=38  Identities=13%  Similarity=-0.054  Sum_probs=33.2

Q ss_pred             cCC-CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         78 DFP-GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        78 d~P-~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      ++| ..+.++++.|...+...++..++-+|.+|.++|++
T Consensus        41 ~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~   79 (140)
T 1vdy_A           41 SSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGK   79 (140)
T ss_dssp             HSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTT
T ss_pred             hcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHh
Confidence            344 34699999999999999999999999999999974

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=92.19  E-value=0.86  Score=34.58  Aligned_cols=93  Identities=10%  Similarity=0.088  Sum_probs=64.7

Q ss_pred             CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHH-H----HHHHHHHhcCcHHHHHHHHHHHHHHHhccC
Q psy16982          5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMI-R----DAIVDAVVMAPEVIRVQLAVCVSNIVKHDF   79 (116)
Q Consensus         5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~I-K----~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~   79 (116)
                      .+..+|..|+-.|.|.....                 ++.+..+ .    ..|+..|.+.+..++...+.+|..++...-
T Consensus       328 ~~~~v~~~A~~aL~nl~a~~-----------------~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~  390 (510)
T 3ul1_B          328 PKTNIQKEATWTMSNITAGR-----------------QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT  390 (510)
T ss_dssp             SSHHHHHHHHHHHHHHTTSC-----------------HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHHHcCc-----------------HHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCC
Confidence            45677888888887775421                 1222222 2    345666666778999999999998887532


Q ss_pred             CCch-----hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         80 PGKW-----TQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        80 P~~W-----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      ++.-     .+.++.|++++.+.|+..+..+|.+|..|++
T Consensus       391 ~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~  430 (510)
T 3ul1_B          391 VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  430 (510)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            2221     2357888999999999999999999998875

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=91.98  E-value=0.93  Score=34.49  Aligned_cols=93  Identities=10%  Similarity=0.074  Sum_probs=63.8

Q ss_pred             CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHH-----HHHHHHHHHhcCcHHHHHHHHHHHHHHHhccC
Q psy16982          5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAM-----IRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDF   79 (116)
Q Consensus         5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~-----IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~   79 (116)
                      .+..+|..|+-.|-|.....                 ++.+..     +=..|+..|.+.+..++...+.+|..++...-
T Consensus       347 ~~~~i~~~a~~aL~nl~~~~-----------------~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~  409 (529)
T 3tpo_A          347 PKTNIQKEATWTMSNITAGR-----------------QDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT  409 (529)
T ss_dssp             SSHHHHHHHHHHHHHHHTSC-----------------HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHHHHHhccc-----------------HHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence            35567777777777765432                 112222     22345666666778899999999998876532


Q ss_pred             CCchh-----HHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         80 PGKWT-----QIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        80 P~~Wp-----~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      |+.-.     +.++.|+.++.+.|+..+..+|.+|..|++
T Consensus       410 ~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~  449 (529)
T 3tpo_A          410 VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  449 (529)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            22222     357889999999999999999999988875

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=91.92  E-value=0.72  Score=34.85  Aligned_cols=93  Identities=15%  Similarity=0.113  Sum_probs=65.1

Q ss_pred             ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHH----HHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC-
Q psy16982          6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMI----RDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP-   80 (116)
Q Consensus         6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~I----K~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P-   80 (116)
                      +..+|..|+-.|.|.....-                +..+..+    =..|+.+|.+.+..++...+.++..++...-| 
T Consensus       354 ~~~vr~~A~~aL~~l~~~~~----------------~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~  417 (530)
T 1wa5_B          354 KENIKKEACWTISNITAGNT----------------EQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR  417 (530)
T ss_dssp             CHHHHHHHHHHHHHHTTSCH----------------HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CHHHHHHHHHHHHHHHcCCH----------------HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence            56788888888888764211                1112222    23566666667789999999999999876322 


Q ss_pred             -Cch-----hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         81 -GKW-----TQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        81 -~~W-----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                       ..-     .++++.|+..+.++|+..+..++.+|..+++
T Consensus       418 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~  457 (530)
T 1wa5_B          418 PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK  457 (530)
T ss_dssp             THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence             111     2378889999998899888999999988875

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=91.77  E-value=0.66  Score=30.24  Aligned_cols=46  Identities=17%  Similarity=0.121  Sum_probs=22.4

Q ss_pred             CcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHH
Q psy16982         59 APEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQ  111 (116)
Q Consensus        59 ~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~  111 (116)
                      ++..+|...+.+++.+..       ++.++.+...+.++++.....++.+|..
T Consensus       119 ~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~  164 (201)
T 3ltj_A          119 EDWFVRIAAAFALGEIGD-------ERAVEPLIKALKDEDGWVRQSAADALGE  164 (201)
T ss_dssp             SSHHHHHHHHHHHHHHTC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            334555555555555432       2344445555555555444555554443

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=91.03  E-value=0.8  Score=30.04  Aligned_cols=53  Identities=19%  Similarity=0.143  Sum_probs=29.1

Q ss_pred             HHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHH
Q psy16982         53 VDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQL  112 (116)
Q Consensus        53 l~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l  112 (116)
                      ++.|.+++..+|.....++..+..       ++.++.+...+.++|+.....++.+|..+
T Consensus        56 ~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~  108 (211)
T 3ltm_A           56 IKALKDEDAWVRRAAADALGQIGD-------ERAVEPLIKALKDEDGWVRQSAAVALGQI  108 (211)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHhhCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            333333345566665555555532       34555566666666666666666666554

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=90.72  E-value=0.68  Score=30.17  Aligned_cols=26  Identities=23%  Similarity=0.129  Sum_probs=12.4

Q ss_pred             HHHHHHHhhCCCChHHHhHHHHHHHH
Q psy16982         86 IVDKVSIYLQNPDATPWFGALLCLYQ  111 (116)
Q Consensus        86 Ll~~l~~~l~~~~~~~~~~~L~~L~~  111 (116)
                      .++.+...+.++++.....++.+|..
T Consensus        77 ~~~~L~~~l~d~~~~vr~~a~~aL~~  102 (201)
T 3ltj_A           77 AVEPLIKALKDEDGWVRQSAAVALGQ  102 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            34444444444455444455544443

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=90.60  E-value=0.46  Score=29.21  Aligned_cols=56  Identities=18%  Similarity=0.177  Sum_probs=45.0

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHH
Q psy16982         50 DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQL  112 (116)
Q Consensus        50 ~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l  112 (116)
                      ..|++.|.+++..+|...+.++..+..       ++.++.+...+.++|+.....+..+|..+
T Consensus        45 ~~L~~~L~d~~~~vR~~A~~aL~~~~~-------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~  100 (131)
T 1te4_A           45 EPLLESLSNEDWRIRGAAAWIIGNFQD-------ERAVEPLIKLLEDDSGFVRSGAARSLEQI  100 (131)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHGGGCS-------HHHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            677888887778999998888887753       56788888888888888888888888765

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=89.50  E-value=1.2  Score=30.55  Aligned_cols=62  Identities=11%  Similarity=-0.068  Sum_probs=40.9

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHH-hhCCCChHHHhHHHHHHHHHH
Q psy16982         50 DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSI-YLQNPDATPWFGALLCLYQLV  113 (116)
Q Consensus        50 ~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~-~l~~~~~~~~~~~L~~L~~l~  113 (116)
                      ..|+..+.+++..+|...+.++..+...  +...+.+++.+.. .++++++.....++.+|..+.
T Consensus        57 ~~L~~~l~d~~~~vR~~A~~aL~~l~~~--~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~  119 (280)
T 1oyz_A           57 RLAIEFCSDKNYIRRDIGAFILGQIKIC--KKCEDNVFNILNNMALNDKSACVRATAIESTAQRC  119 (280)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHSCCC--TTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhccc--cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence            4455555555667787777777766532  2456667777664 456667777788888888776

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=89.12  E-value=1.5  Score=31.34  Aligned_cols=92  Identities=16%  Similarity=0.173  Sum_probs=64.0

Q ss_pred             ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHH----HHHHHHHhcCcHHHHHHHHHHHHHHHhccCCC
Q psy16982          6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIR----DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPG   81 (116)
Q Consensus         6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK----~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~   81 (116)
                      +..+|--|+-.|-|.++.+-.                ..+..+.    ..|+.+|.+.+..++...+-+|+.++..+ |+
T Consensus       138 ~~~v~~~A~~ALsnl~~~~~~----------------~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~-~~  200 (296)
T 1xqr_A          138 CDTVRVKALFAISCLVREQEA----------------GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH-PE  200 (296)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHH----------------HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GG
T ss_pred             CHHHHHHHHHHHHHHHcCCcH----------------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-hH
Confidence            456677777777666653221                1112222    25666666677899999999999998762 32


Q ss_pred             c-h----hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         82 K-W----TQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        82 ~-W----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      . .    .+.++.|+.++.++|+..+..++.+|..+++
T Consensus       201 ~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~  238 (296)
T 1xqr_A          201 HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT  238 (296)
T ss_dssp             GHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHh
Confidence            1 1    2588999999999999999999999988875

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=89.01  E-value=1.5  Score=32.79  Aligned_cols=62  Identities=18%  Similarity=0.056  Sum_probs=51.2

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHhccCCCch-----hHHHHHHHHhhCCCChHHHhHHHHHHHHHH
Q psy16982         51 AIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKW-----TQIVDKVSIYLQNPDATPWFGALLCLYQLV  113 (116)
Q Consensus        51 ~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~W-----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~  113 (116)
                      .++..|.+.+..++...+.++..++..+ |..+     .+.+|.+++++.++++.....+..+|..+.
T Consensus         6 ~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa   72 (457)
T 1xm9_A            6 KAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLV   72 (457)
T ss_dssp             HHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            4677888877889999999999998655 4445     457899999999999988889999988876

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=88.85  E-value=2.3  Score=29.08  Aligned_cols=57  Identities=14%  Similarity=0.052  Sum_probs=31.7

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHH
Q psy16982         51 AIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQL  112 (116)
Q Consensus        51 ~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l  112 (116)
                      .|++++.+++..+|...+.++..+...     =|+.++.+...+.++|+.....++.+|..+
T Consensus       163 ~L~~~l~d~~~~vr~~a~~aL~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~  219 (280)
T 1oyz_A          163 LLINLLKDPNGDVRNWAAFAININKYD-----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYR  219 (280)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHTCC-----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHhhccC-----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            344444444455666666666555311     245666666666666666666666665543

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=88.75  E-value=0.42  Score=39.91  Aligned_cols=96  Identities=16%  Similarity=0.264  Sum_probs=69.6

Q ss_pred             HHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHhcc-CCCchhHH
Q psy16982          9 VRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP-EVIRVQLAVCVSNIVKHD-FPGKWTQI   86 (116)
Q Consensus         9 vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~-~~i~~~l~~~i~~Ia~~d-~P~~Wp~L   86 (116)
                      +|+.+..++.-++-++.-            .++++++..|.+.++.+|.++. --||...+.+++.+.+.- +...=.++
T Consensus       817 ~R~~~L~~lq~~~f~n~f------------~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~l  884 (997)
T 1vsy_5          817 QTKLQLAFIQHFLSAELL------------QLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSL  884 (997)
T ss_dssp             SHHHHHHHHHHHHHHHTT------------TSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH------------HcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHH
Confidence            677776666666655542            5788899999999999999999 999999999999999885 42322355


Q ss_pred             HHHHHHhhCC------------CChHHHhHHHHHHHHHHhhC
Q psy16982         87 VDKVSIYLQN------------PDATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        87 l~~l~~~l~~------------~~~~~~~~~L~~L~~l~~~y  116 (116)
                      +..+...+..            .+....++|...|..++..|
T Consensus       885 i~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~  926 (997)
T 1vsy_5          885 IERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAF  926 (997)
T ss_dssp             HHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhC
Confidence            5555554422            11157899999999887643

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=88.57  E-value=1.5  Score=32.46  Aligned_cols=68  Identities=16%  Similarity=0.114  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         46 AMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        46 ~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      +.+=..+-++|.+.++.||+..+.++..+...+ |+-=..+++.+.+.+.+.|+-.++.|+.+|+.+++
T Consensus       138 ~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~  205 (355)
T 3tjz_B          138 QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS-FDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK  205 (355)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence            344445556666677889999999888876553 43223456677777888888888999999998875

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=88.14  E-value=1.4  Score=36.78  Aligned_cols=70  Identities=14%  Similarity=0.139  Sum_probs=57.1

Q ss_pred             CCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCC----CChHHHhHHHHHHH
Q psy16982         39 SLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQN----PDATPWFGALLCLY  110 (116)
Q Consensus        39 ~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~----~~~~~~~~~L~~L~  110 (116)
                      ..++-++..+++ |++.-.+.-..||.....++..+.+. ||+.++.++|.+++.|+.    .|.+...|||++|.
T Consensus       126 ~~t~l~~~ll~d-L~~Ls~S~Y~~VR~~AQ~~L~~~~~~-~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~  199 (997)
T 1vsy_5          126 KASKLENLLLVD-IIQLATSLYPDIYKPAQGTLVHCMKQ-LVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLL  199 (997)
T ss_dssp             CCCSHHHHHHHH-HHHHHTSSCHHHHHHHHHHHHHHHTT-BTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTT
T ss_pred             CCChHHHHHHHH-HHHHhcCchHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHh
Confidence            477788888864 45544444589999999999999988 899999999999998865    47788999999876

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=87.84  E-value=5.4  Score=30.92  Aligned_cols=91  Identities=15%  Similarity=0.089  Sum_probs=60.9

Q ss_pred             CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHH-----HHHHHHHHHhcCcHHHHHHHHHHHHHHHhccC
Q psy16982          5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAM-----IRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDF   79 (116)
Q Consensus         5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~-----IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~   79 (116)
                      .+..+|..|+-.|++.....                  +.+..     .=..|+++|.+.+..++...+.++..++..+-
T Consensus        69 ~~~~~~~~A~~~L~~Ls~~~------------------~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~  130 (644)
T 2z6h_A           69 NDVETARCTAGTLHNLSHHR------------------EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE  130 (644)
T ss_dssp             CCHHHHHHHHHHHHHHTTSH------------------HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHST
T ss_pred             CCHHHHHHHHHHHHHHhcCh------------------hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Confidence            35677777877777654321                  11111     22356666666778999999999999998752


Q ss_pred             CCc--h--hHHHHHHHHhhCCCChHHHhHHHHHHHHHH
Q psy16982         80 PGK--W--TQIVDKVSIYLQNPDATPWFGALLCLYQLV  113 (116)
Q Consensus        80 P~~--W--p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~  113 (116)
                      +..  -  .+.++.++..+.+++......++.+|..++
T Consensus       131 ~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La  168 (644)
T 2z6h_A          131 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA  168 (644)
T ss_dssp             THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHH
Confidence            211  1  468899999999988766666666776655

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=87.29  E-value=5.4  Score=29.74  Aligned_cols=91  Identities=14%  Similarity=0.108  Sum_probs=64.1

Q ss_pred             ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHH-HHHH----HHHHHHHhcCcHHHHHHHHHHHHHHHhccCC
Q psy16982          6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDK-AMIR----DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP   80 (116)
Q Consensus         6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k-~~IK----~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P   80 (116)
                      +..+|..|+-.|+|.....-                 +.| ..++    ..|+++|.+.+..++...+.++..|+... |
T Consensus        15 ~~~~q~~A~~~L~~l~~~~~-----------------~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~   76 (457)
T 1xm9_A           15 DEKYQAIGAYYIQHTCFQDE-----------------SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-T   76 (457)
T ss_dssp             CTHHHHHHHHHHHHHTSSCS-----------------SHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-H
T ss_pred             CHHHHHHHHHHHHHHHcCCh-----------------HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-H
Confidence            56789999999999763211                 112 2333    34566666666889999999999999852 2


Q ss_pred             CchhH-----HHHHHHHhhC-CCChHHHhHHHHHHHHHHh
Q psy16982         81 GKWTQ-----IVDKVSIYLQ-NPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        81 ~~Wp~-----Ll~~l~~~l~-~~~~~~~~~~L~~L~~l~~  114 (116)
                      +.-..     -+|.+++++. +++++....+..+|..++.
T Consensus        77 ~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~  116 (457)
T 1xm9_A           77 TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS  116 (457)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhc
Confidence            33333     4889999998 7888888888888887763

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=87.18  E-value=1.8  Score=35.40  Aligned_cols=71  Identities=8%  Similarity=0.180  Sum_probs=57.2

Q ss_pred             hHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhccCC-CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         43 QDKAMIRDAIVDAVVMA---PEVIRVQLAVCVSNIVKHDFP-GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        43 ~~k~~IK~~ll~~l~~~---~~~i~~~l~~~i~~Ia~~d~P-~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      +....+.+.+++.|.++   .+.+|...+.+++.++.. ++ +..+.+++.+++.+.+++......|..+|..+|+
T Consensus       451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~-~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~  525 (960)
T 1wa5_C          451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ-LTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT  525 (960)
T ss_dssp             CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG-SCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence            44455667788888776   678999999999999875 45 6788899999999988777777788888888876

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=86.92  E-value=3.6  Score=33.71  Aligned_cols=103  Identities=11%  Similarity=0.050  Sum_probs=68.7

Q ss_pred             CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhccCC-C
Q psy16982          5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMA--PEVIRVQLAVCVSNIVKHDFP-G   81 (116)
Q Consensus         5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~--~~~i~~~l~~~i~~Ia~~d~P-~   81 (116)
                      .+..+|..|++.|-+.-...= . +..     -..+.+..-..+=..+...|.++  +..++...+.+++.+....-- .
T Consensus       342 ~~~~vr~~Al~~L~kl~s~~~-~-d~~-----~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~  414 (810)
T 3now_A          342 KNDGIRVRALVGLCKLGSYGG-Q-DAA-----IRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKE  414 (810)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTT-T-TTS-----CCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccccc-c-Ccc-----ccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence            346788899987766532111 0 100     01233322233334667777777  568999999999999754211 2


Q ss_pred             ch---hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         82 KW---TQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        82 ~W---p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      .|   ++++|.|++++.++|....++++.+|.-|+.
T Consensus       415 ~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~  450 (810)
T 3now_A          415 KLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCN  450 (810)
T ss_dssp             HHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred             HHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcC
Confidence            33   4799999999999999999999999998875

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=86.53  E-value=2.8  Score=29.74  Aligned_cols=66  Identities=24%  Similarity=0.165  Sum_probs=36.6

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHhc-cCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHH
Q psy16982         48 IRDAIVDAVVMAPEVIRVQLAVCVSNIVKH-DFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLV  113 (116)
Q Consensus        48 IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~-d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~  113 (116)
                      |.+.+...+.+.+..++...-.++..|+.+ +=|+-|.+.+..+-.+++++|+..+.-||..|..+.
T Consensus       151 V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~il  217 (265)
T 3b2a_A          151 VRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKAL  217 (265)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            344444444333345555555555555543 334566666666666666666666666666665543

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=86.24  E-value=5.7  Score=27.95  Aligned_cols=67  Identities=13%  Similarity=0.147  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         47 MIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        47 ~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      .+=..++++..+.+..+|+.++..|..+++.+ |+-=+..++.|..++..+|+..+..++.|...+++
T Consensus        53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~  119 (257)
T 3gs3_A           53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYK  119 (257)
T ss_dssp             HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            34445566544455789999999999999775 67778888999899988888877777777666543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=86.07  E-value=2.7  Score=31.19  Aligned_cols=56  Identities=11%  Similarity=-0.016  Sum_probs=44.6

Q ss_pred             CcHHHHHHHHHHHHHHHhccCC-CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         59 APEVIRVQLAVCVSNIVKHDFP-GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        59 ~~~~i~~~l~~~i~~Ia~~d~P-~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      .+..++...+.++..++...-+ ..-.+.++.+++.+.++|++....+..+|..++.
T Consensus       239 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~  295 (529)
T 1jdh_A          239 PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC  295 (529)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence            4567888889999999876422 2335899999999999999988899999888764

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=83.59  E-value=7.6  Score=31.27  Aligned_cols=96  Identities=15%  Similarity=0.130  Sum_probs=63.9

Q ss_pred             ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhc-----Cc---HHHHHHHHHHHHHHHhc
Q psy16982          6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVM-----AP---EVIRVQLAVCVSNIVKH   77 (116)
Q Consensus         6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~-----~~---~~i~~~l~~~i~~Ia~~   77 (116)
                      .-.+|.-||+-||-.++.+-...    |.  ....+.  --.+|-..+-+|.+     ++   .+||-..|++++.+ . 
T Consensus       187 ~WEiRHGAALGLREILR~hG~GA----GR--~~~~N~--DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~-  256 (800)
T 3oc3_A          187 EWYKRHGAFLAFAAMFSEIDNGG----DI--QIRVDS--KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-Y-  256 (800)
T ss_dssp             SHHHHHHHHHHHHHHHHHCC--------C--CCCCCT--THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-T-
T ss_pred             chhhhhHHHHHHHHHHHHhccCC----ce--eccccH--HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-H-
Confidence            56899999999999999875321    10  011221  23444444444433     12   58999999999999 4 


Q ss_pred             cCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHH
Q psy16982         78 DFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQL  112 (116)
Q Consensus        78 d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l  112 (116)
                      -.|.. -..+..++..+....-+..+|||..|+++
T Consensus       257 hLp~e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL  290 (800)
T 3oc3_A          257 PLIGP-NDIIEQLVGFLDSGDWQVQFSGLIALGYL  290 (800)
T ss_dssp             TTSCS-CCHHHHHTTGGGCSCHHHHHHHHHHHHHT
T ss_pred             hCChh-HHHHHHHHhhcCCCCeeehhhhHHHHHHH
Confidence            46766 34566666555677789999999999987

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=83.03  E-value=4.6  Score=27.90  Aligned_cols=52  Identities=17%  Similarity=0.178  Sum_probs=40.0

Q ss_pred             CcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHH
Q psy16982         59 APEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQ  111 (116)
Q Consensus        59 ~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~  111 (116)
                      .+++++-.++.++..|++. +|.--|+.+..+.+++++.|......+|..+..
T Consensus       119 gd~kikIn~~yaLeeIara-nP~l~~~v~rdi~smltskd~~Dkl~aLnFi~a  170 (253)
T 2db0_A          119 GDEKTKINVSYALEEIAKA-NPMLMASIVRDFMSMLSSKNREDKLTALNFIEA  170 (253)
T ss_dssp             CSHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHT
T ss_pred             CCccceecHHHHHHHHHHh-ChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence            3578888889999999888 577777777888888888777666777766554

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=82.58  E-value=5.3  Score=29.88  Aligned_cols=62  Identities=15%  Similarity=0.162  Sum_probs=47.0

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHH
Q psy16982         51 AIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLV  113 (116)
Q Consensus        51 ~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~  113 (116)
                      .|+++-...+..+|+.++..|...+..+ ++.=+..++.|..++.++|+..+..++.|...++
T Consensus        67 ~il~f~~d~~~~vRk~~a~FieEa~~~~-~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY  128 (386)
T 3o2t_A           67 EIIAFQADKSIEVRKFVIGFIEEACKRD-IELLLKLIANLNMLLRDENVNVVKKAILTMTQLY  128 (386)
T ss_dssp             HHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            3444444455789999999999999875 4556899999999998888877777777665554

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=82.39  E-value=5.5  Score=30.88  Aligned_cols=56  Identities=11%  Similarity=-0.016  Sum_probs=44.9

Q ss_pred             CcHHHHHHHHHHHHHHHhccCC-CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         59 APEVIRVQLAVCVSNIVKHDFP-GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        59 ~~~~i~~~l~~~i~~Ia~~d~P-~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      .+..++...+.++..+++..-+ ..-.++++.|++.+.++|......+..+|..++.
T Consensus       236 ~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~  292 (644)
T 2z6h_A          236 PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC  292 (644)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            4568888899999999876322 2335899999999999999888889999988765

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=81.74  E-value=14  Score=27.32  Aligned_cols=90  Identities=16%  Similarity=0.138  Sum_probs=59.3

Q ss_pred             ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHH-H----HHHHHHHhcCcHHHHHHHHHHHHHHHhccCC
Q psy16982          6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMI-R----DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP   80 (116)
Q Consensus         6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~I-K----~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P   80 (116)
                      +..+|..|+-.|++....                  ++.+..+ +    ..|++.|.+.+..++...+.++..++..+-.
T Consensus        73 ~~~~~~~a~~~L~~ls~~------------------~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  134 (529)
T 1jdh_A           73 DVETARCTAGTLHNLSHH------------------REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG  134 (529)
T ss_dssp             CHHHHHHHHHHHHHHTTS------------------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHHHcC------------------chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc
Confidence            566777788777774332                  1122222 2    2555666666788999999999999887422


Q ss_pred             C--c--hhHHHHHHHHhhCCCChHHHhHHHHHHHHHH
Q psy16982         81 G--K--WTQIVDKVSIYLQNPDATPWFGALLCLYQLV  113 (116)
Q Consensus        81 ~--~--Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~  113 (116)
                      .  .  =.+.+|.+++.+.+++......+..+|..++
T Consensus       135 ~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la  171 (529)
T 1jdh_A          135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA  171 (529)
T ss_dssp             HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            1  1  1468899999999888776666666665544

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=81.34  E-value=18  Score=28.44  Aligned_cols=93  Identities=12%  Similarity=0.149  Sum_probs=64.7

Q ss_pred             ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHH-----HHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC
Q psy16982          6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMI-----RDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP   80 (116)
Q Consensus         6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~I-----K~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P   80 (116)
                      ...++-.|+-.|.|.....|..             +...+..|     -..|+++|...+..++...+.+|+.++..  |
T Consensus       322 ~~~v~E~Aa~AL~nL~ag~~~~-------------~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~--~  386 (584)
T 3l6x_A          322 TPAILEASAGAIQNLCAGRWTY-------------GRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVD--A  386 (584)
T ss_dssp             CHHHHHHHHHHHHHHHSSCSHH-------------HHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT--C
T ss_pred             CHHHHHHHHHHHHHHHcCCccc-------------cHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--h
Confidence            4567777888888888776642             12222233     34456666667789999999999999875  4


Q ss_pred             Cchh----HHHHHHHHhhCCC--------ChHHHhHHHHHHHHHH
Q psy16982         81 GKWT----QIVDKVSIYLQNP--------DATPWFGALLCLYQLV  113 (116)
Q Consensus        81 ~~Wp----~Ll~~l~~~l~~~--------~~~~~~~~L~~L~~l~  113 (116)
                      ..+.    +.+|.|+++|.++        +.+.+..++.+|+.|+
T Consensus       387 ~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~  431 (584)
T 3l6x_A          387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVI  431 (584)
T ss_dssp             SCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHh
Confidence            5553    5789999999876        2456778888888765

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=81.25  E-value=12  Score=26.31  Aligned_cols=74  Identities=12%  Similarity=0.049  Sum_probs=50.8

Q ss_pred             CHhHHHHHHHHHHHHHhcC---c-HHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         41 HEQDKAMIRDAIVDAVVMA---P-EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        41 ~~~~k~~IK~~ll~~l~~~---~-~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      .++....-|+.+++.|.+.   + ..--.+|.++-..+...| |.-.|++++.+++...+.+.+...-+...+.+.|++
T Consensus         6 ~~~~~~~~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~d-p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~   83 (257)
T 3gs3_A            6 TDEKTATARAKVVDWCNELVIASPSTKCELLAKVQETVLGSC-AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV   83 (257)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTT-GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccC-HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Confidence            3456677788888888763   2 223345555555566656 889999999999987667777777777777777764

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=81.05  E-value=17  Score=28.14  Aligned_cols=76  Identities=16%  Similarity=0.156  Sum_probs=53.2

Q ss_pred             ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhH
Q psy16982          6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQ   85 (116)
Q Consensus         6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~   85 (116)
                      +...+++||-.+-++++.+-.             +.  +++  =+.++.+.-+++..||.|...-+-.+++.|+   =+-
T Consensus        41 ~~k~K~LaaQ~I~kffk~FP~-------------l~--~~A--i~a~lDLcEDed~~IR~qaik~Lp~~ck~~~---i~k  100 (507)
T 3u0r_A           41 GTKEKRLAAQFIPKFFKHFPE-------------LA--DSA--INAQLDLCEDEDVSIRRQAIKELPQFATGEN---LPR  100 (507)
T ss_dssp             CHHHHHHHHHHHHHHGGGCGG-------------GH--HHH--HHHHHHHHTCSSHHHHHHHHHHGGGGCCTTC---HHH
T ss_pred             CHHHHHHHHHHHHHHHhhChh-------------hH--HHH--HHHHHHHHhcccHHHHHHHHHhhHHHhhhhh---hhh
Confidence            467788888776666655432             22  111  1456677777788999998888888887732   477


Q ss_pred             HHHHHHHhhCCCChHH
Q psy16982         86 IVDKVSIYLQNPDATP  101 (116)
Q Consensus        86 Ll~~l~~~l~~~~~~~  101 (116)
                      +.+.|+|+++++++..
T Consensus       101 iaDvL~QlLqtdd~~E  116 (507)
T 3u0r_A          101 VADILTQLLQTDDSAE  116 (507)
T ss_dssp             HHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHHHhccchHH
Confidence            8889999999887643

>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E

Probab=80.63  E-value=7  Score=26.03  Aligned_cols=46  Identities=17%  Similarity=0.326  Sum_probs=34.6

Q ss_pred             HHHHHHhccCC-CchhHHHHHHHHhh-CC--CChHHHhHHHHHHHHHHhh
Q psy16982         70 CVSNIVKHDFP-GKWTQIVDKVSIYL-QN--PDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        70 ~i~~Ia~~d~P-~~Wp~Ll~~l~~~l-~~--~~~~~~~~~L~~L~~l~~~  115 (116)
                      .+..||..-|- ..++++++.|...+ +.  .+...++-+|.+|.+|++.
T Consensus        54 ~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~n  103 (176)
T 1xgw_A           54 LMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRN  103 (176)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHh
Confidence            34555554443 78899999999885 43  3678899999999999863

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=80.55  E-value=7.8  Score=28.24  Aligned_cols=73  Identities=12%  Similarity=0.195  Sum_probs=53.1

Q ss_pred             CHhHHHHHHH-----HHHHHHhcCcHHHHHHHHHHHHHHHhccCCCch-----hHHHHHHHHhhCCCChHHHhHHHHHHH
Q psy16982         41 HEQDKAMIRD-----AIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKW-----TQIVDKVSIYLQNPDATPWFGALLCLY  110 (116)
Q Consensus        41 ~~~~k~~IK~-----~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~W-----p~Ll~~l~~~l~~~~~~~~~~~L~~L~  110 (116)
                      +++.|+.+++     .|++.|.+.+..++...+-+|..++..+ |+.=     -+.+|.|++++.+++......+..+|.
T Consensus       252 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~  330 (354)
T 3nmw_A          252 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR  330 (354)
T ss_dssp             CHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            4555665553     3555555566789999999999998543 2211     246899999999999988999999998


Q ss_pred             HHHh
Q psy16982        111 QLVK  114 (116)
Q Consensus       111 ~l~~  114 (116)
                      .++.
T Consensus       331 nL~~  334 (354)
T 3nmw_A          331 NLMA  334 (354)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            8875

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=80.41  E-value=4.7  Score=32.36  Aligned_cols=56  Identities=11%  Similarity=-0.016  Sum_probs=44.5

Q ss_pred             CcHHHHHHHHHHHHHHHhccCC-CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         59 APEVIRVQLAVCVSNIVKHDFP-GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        59 ~~~~i~~~l~~~i~~Ia~~d~P-~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      .+..++...+.++..++...-+ ..-.++++.|++.+.++|......+..+|..++.
T Consensus       372 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~  428 (780)
T 2z6g_A          372 PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC  428 (780)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred             CchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            4467778888899999876422 2347899999999999999988999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	116
d1wa5c_	959	a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc	2e-28
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	8e-17
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	9e-17
d1qgra_	876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	2e-16
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	2e-08

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  105 bits (262), Expect = 2e-28
 Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 6/114 (5%)

Query: 3   SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEV 62
           + + +  R AG ++ KN I  +WV++  +        L   +  +I+  IV  ++  P  
Sbjct: 47  TNLPLSTRLAGALFFKNFIKRKWVDENGNHL------LPANNVELIKKEIVPLMISLPNN 100

Query: 63  IRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
           ++VQ+   +S+I   DFP +W  ++  ++  L N D     G L   + + K +
Sbjct: 101 LQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (176), Expect = 8e-17
 Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 12/113 (10%)

Query: 2   MSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPE 61
           +   D P R    + LKN +   +             +        I+   ++ +  +  
Sbjct: 55  LKSEDEPTRSLSGLILKNNVKAHFQ------------NFPNGVTDFIKSECLNNIGDSSP 102

Query: 62  VIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114
           +IR  + + ++ I        W  ++ K+   L + D     GA   L ++ +
Sbjct: 103 LIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICE 155

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.6 bits (176), Expect = 9e-17
 Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 2/114 (1%)

Query: 3   SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEV 62
               +  R    + LKN + ++   K           +  + K  I+   + A+V     
Sbjct: 51  ENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPR 110

Query: 63  IRVQLAVCVSNIVKHDFP-GKWTQIVDKVSIYLQNPDATPW-FGALLCLYQLVK 114
           I    A  ++ I   + P G W +++  +               +LL L  + +
Sbjct: 111 IANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCE 164

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (173), Expect = 2e-16
 Identities = 14/117 (11%), Positives = 46/117 (39%), Gaps = 5/117 (4%)

Query: 3   SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEV 62
                  R A  + +KN +T++  + +         ++    +  +++ ++  +      
Sbjct: 47  PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW-LAIDANARREVKNYVLHTLG-TETY 104

Query: 63  IRVQLAVCVSNIVKHDFP-GKWTQIVDKVSIYLQNPDATPW--FGALLCLYQLVKNY 116
                + CV+ I   + P  +W +++ ++   + NP++T       L  +  + ++ 
Sbjct: 105 RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 161

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 2e-08
 Identities = 13/101 (12%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 3   SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEV 62
                  R A  + +KN +T++  + +         ++    +  +++ ++  +      
Sbjct: 46  PGNSQVARVAAGLQIKNSLTSKDPDIK-AQYQQRWLAIDANARREVKNYVLQTLGTETYR 104

Query: 63  IRVQLAVCVSNIVKHDFP-GKWTQIVDKVSIYLQNPDATPW 102
                + CV+ I   + P  +W +++ ++   + NP++T  
Sbjct: 105 PS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEH 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	116
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.92
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.77
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.66
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.44
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.2
d1b3ua_	588	Constant regulatory domain of protein phosphatase	96.84
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	95.89
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	95.6
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	94.58
d1b3ua_	588	Constant regulatory domain of protein phosphatase	94.5
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	94.28
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	94.15
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	94.08
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	93.78
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	93.62
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	93.4
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	92.87
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	92.74
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	90.89
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	89.68
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	89.42
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	88.6
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	87.65
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	86.21
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	86.01
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	85.13
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	84.18
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	80.85
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	80.16

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.4e-25  Score=176.00  Aligned_cols=109  Identities=25%  Similarity=0.525  Sum_probs=101.4

Q ss_pred             CCCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCC
Q psy16982          2 MSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPG   81 (116)
Q Consensus         2 ~~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~   81 (116)
                      +++.+.++|++|+|+|||.|+++|.....      +..+|+++|+.||+.++++|.++++.+|++++.+|+.|+++|||+
T Consensus        46 ~~~~~~~iR~~A~i~lKn~i~~~W~~~~~------~~~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~  119 (959)
T d1wa5c_          46 STNLPLSTRLAGALFFKNFIKRKWVDENG------NHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPD  119 (959)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHHSBCSSS------CBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHhcccccc------cCCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence            46778999999999999999999986432      357999999999999999999988999999999999999999999


Q ss_pred             chhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982         82 KWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        82 ~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y  116 (116)
                      +||+|++.+++.++++|+...+++|.+|+.+||+|
T Consensus       120 ~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~  154 (959)
T d1wa5c_         120 RWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW  154 (959)
T ss_dssp             TCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred             ccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999875

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=2.4e-19  Score=138.22  Aligned_cols=114  Identities=16%  Similarity=0.165  Sum_probs=96.3

Q ss_pred             CCCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC-
Q psy16982          2 MSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP-   80 (116)
Q Consensus         2 ~~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P-   80 (116)
                      +.+.+..+|++|+++|||.+.++|...........+..++++.|+.||+.+++++.++++.||++++.+++.|++.||| 
T Consensus        50 ~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~  129 (861)
T d2bpta1          50 DENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPH  129 (861)
T ss_dssp             CTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred             cCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCc
Confidence            4577889999999999999999997543211000123589999999999999999998899999999999999999999 


Q ss_pred             CchhHHHHHHHHhhCCCCh-HHHhHHHHHHHHHHhh
Q psy16982         81 GKWTQIVDKVSIYLQNPDA-TPWFGALLCLYQLVKN  115 (116)
Q Consensus        81 ~~Wp~Ll~~l~~~l~~~~~-~~~~~~L~~L~~l~~~  115 (116)
                      ++||+|++.|++.+++++. ....++|.+|..+|+.
T Consensus       130 ~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~  165 (861)
T d2bpta1         130 GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCES  165 (861)
T ss_dssp             TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             CchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence            5899999999999988654 5677999999999975

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1e-19  Score=140.92  Aligned_cols=113  Identities=12%  Similarity=0.208  Sum_probs=94.8

Q ss_pred             CCCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC-
Q psy16982          2 MSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP-   80 (116)
Q Consensus         2 ~~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P-   80 (116)
                      +.+.+.++|++|+|+|||.+.++|....... ...|..+++++|+.||+.+++++.+++ .++++++.+++.|++.||| 
T Consensus        46 ~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~-~~~~~~i~~~~k~~ik~~ll~~l~~~~-~~~~~~a~~i~~i~~~~~p~  123 (876)
T d1qgra_          46 NPGNSQVARVAAGLQIKNSLTSKDPDIKAQY-QQRWLAIDANARREVKNYVLHTLGTET-YRPSSASQCVAGIACAEIPV  123 (876)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH-HHHHHTSCHHHHHHHHHHHHHHTTTCC-SSSCHHHHHHHHHHHHHGGG
T ss_pred             cCCCCHHHHHHHHHHHHHHhhccccchhhhh-hcccccCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHCCc
Confidence            5678899999999999999999997543211 012568999999999999999998765 4677899999999999999 


Q ss_pred             CchhHHHHHHHHhhCCCC--hHHHhHHHHHHHHHHhhC
Q psy16982         81 GKWTQIVDKVSIYLQNPD--ATPWFGALLCLYQLVKNY  116 (116)
Q Consensus        81 ~~Wp~Ll~~l~~~l~~~~--~~~~~~~L~~L~~l~~~y  116 (116)
                      ++||+|++.+.+.+.+++  .....++|.+|.++|+.+
T Consensus       124 ~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~  161 (876)
T d1qgra_         124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI  161 (876)
T ss_dssp             TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             cccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHC
Confidence            789999999999987654  466789999999999753

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.4e-20  Score=145.45  Aligned_cols=100  Identities=17%  Similarity=0.313  Sum_probs=93.0

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCch
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKW   83 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~W   83 (116)
                      +.+..+|++||++|||.|+++|.            .++++.|+.||+.++.+|.++++.+|++++.+|+.|++.|+|+.|
T Consensus        57 ~~~~~~R~~A~i~Lkn~i~~~w~------------~~~~~~~~~Ik~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~W  124 (888)
T d1qbkb_          57 SEDEPTRSLSGLILKNNVKAHFQ------------NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNW  124 (888)
T ss_dssp             CSTTTHHHHTTGGGGGTHHHHTT------------CSTTTCCHHHHHHHTTGGGCCCSSTTTTTTTTTHHHHTTTSSCSS
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhc------------cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccch
Confidence            34667999999999999999997            588899999999999999988889999999999999999999999


Q ss_pred             hHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         84 TQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        84 p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      |+|++.|.+.++++|...++++|.+|.+||+.
T Consensus       125 pell~~L~~~l~s~~~~~~~~al~~L~~i~e~  156 (888)
T d1qbkb_         125 PDLLPKLCSLLDSEDYNTCEGAFGALQKICED  156 (888)
T ss_dssp             TTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGG
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999998888899999999999974

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.5e-14  Score=101.80  Aligned_cols=112  Identities=12%  Similarity=0.202  Sum_probs=91.2

Q ss_pred             CCCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC-
Q psy16982          2 MSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP-   80 (116)
Q Consensus         2 ~~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P-   80 (116)
                      +++.+..+|++|+++|||.+.++|....... ...|..++++.|+.||+.+++.+..++. +++.++.+++.++..++| 
T Consensus        45 ~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~-~~~~~~l~~~~~~~i~~~ll~~~~~~~~-~~~~~~~~~~~i~~~~~~~  122 (458)
T d1ibrb_          45 NPGNSQVARVAAGLQIKNSLTSKDPDIKAQY-QQRWLAIDANARREVKNYVLQTLGTETY-RPSSASQCVAGIACAEIPV  122 (458)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH-HHHHHTSCHHHHHHHHHHHHHHTTCCCS-SSCSHHHHHHHHHHHHGGG
T ss_pred             cCCCCHHHHHHHHHHHHHHhhccCchhhhHH-hhhhccCCHHHHHHHHHHHHhccCCCcH-HHHHHHHHHHHHHHHhCCc
Confidence            4567889999999999999999997532211 0124579999999999999999988764 455678999999999999 


Q ss_pred             CchhHHHHHHHHhhCCC--ChHHHhHHHHHHHHHHhh
Q psy16982         81 GKWTQIVDKVSIYLQNP--DATPWFGALLCLYQLVKN  115 (116)
Q Consensus        81 ~~Wp~Ll~~l~~~l~~~--~~~~~~~~L~~L~~l~~~  115 (116)
                      ..||++++.+++.+.++  +.....+++.++..+++.
T Consensus       123 ~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~  159 (458)
T d1ibrb_         123 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD  159 (458)
T ss_dssp             TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhh
Confidence            78999999999998764  456678999999988764

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00068  Score=53.58  Aligned_cols=99  Identities=11%  Similarity=0.078  Sum_probs=78.6

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCch
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKW   83 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~W   83 (116)
                      +.|..+|.+|.--|.+.+.+.+.            .++++.-..|-+.++.+|.+.++.||.+...|+..++.+--+...
T Consensus        14 ~~D~d~R~ma~~dl~~~l~~~~~------------~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~   81 (1207)
T d1u6gc_          14 SSDKDFRFMATNDLMTELQKDSI------------KLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV   81 (1207)
T ss_dssp             CSSHHHHHHHHHHHHHHTSSSCC------------SCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHhhccc------------ccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH
Confidence            56889999999888888865443            355555555778899999888899999999999999887433688


Q ss_pred             hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         84 TQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        84 p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      +.+++.+...+.+++......+..+|+.++.
T Consensus        82 ~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~  112 (1207)
T d1u6gc_          82 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIG  112 (1207)
T ss_dssp             HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHH
Confidence            9999999998888777777777777777664

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.0016  Score=45.41  Aligned_cols=71  Identities=10%  Similarity=0.004  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC----CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         45 KAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP----GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        45 k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P----~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      -..+...+.+.+.+++..+|.....+++.|+..-.+    ...|++++.++..++++++..+++++.+|+++++.
T Consensus       363 ~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         363 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            345566666666667778999999999999865443    35789999999999999999999999999999864

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.004  Score=45.53  Aligned_cols=76  Identities=12%  Similarity=0.036  Sum_probs=64.3

Q ss_pred             CCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC-CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         39 SLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP-GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        39 ~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P-~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      ..+++.+..+...+.+.+.+..+.+|...+.++..+++.--+ ..|+++++.+.+.+++++......++.++..+++
T Consensus       156 ~~~~~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~  232 (588)
T d1b3ua_         156 RVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ  232 (588)
T ss_dssp             TSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhc
Confidence            567788888888888888888899999999999999987433 5689999999999998888888888888888765

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.60  E-value=0.052  Score=31.20  Aligned_cols=54  Identities=9%  Similarity=0.035  Sum_probs=42.6

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHH
Q psy16982         50 DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLY  110 (116)
Q Consensus        50 ~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~  110 (116)
                      ..|+++|.+++..||...+.++..|..       |+.++.|...++++|+.....++.+|.
T Consensus        56 ~~L~~~l~d~~~~VR~~a~~aL~~i~~-------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          56 EPLIKLLEDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHHhhhccchhHHHHHHHHHHHHhCc-------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            456777888888999999999988743       467888888888888888888887663

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.097  Score=34.48  Aligned_cols=94  Identities=16%  Similarity=0.179  Sum_probs=67.1

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHH----HHHHHHHhcCcHHHHHHHHHHHHHHHhccC
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIR----DAIVDAVVMAPEVIRVQLAVCVSNIVKHDF   79 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK----~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~   79 (116)
                      +.+..+|..|+-.|-+.+..+-.                ..+..++    ..|++.+.+.+..++...+.++..++..+ 
T Consensus       113 ~~~~~v~~~a~~aL~~l~~~~~~----------------~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-  175 (264)
T d1xqra1         113 DACDTVRVKALFAISCLVREQEA----------------GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH-  175 (264)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTCHH----------------HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHHhccchh----------------hHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhcc-
Confidence            34566788777777777654322                1112222    45667777777889998999999988764 


Q ss_pred             CCchh-----HHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         80 PGKWT-----QIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        80 P~~Wp-----~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      |+...     +.++.++..+.++|+.....++.+|..+++
T Consensus       176 ~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~  215 (264)
T d1xqra1         176 PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT  215 (264)
T ss_dssp             GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            44443     358999999999999999999999988865

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.081  Score=38.23  Aligned_cols=68  Identities=15%  Similarity=0.067  Sum_probs=50.5

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCC-chhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982         48 IRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPG-KWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN  115 (116)
Q Consensus        48 IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~-~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~  115 (116)
                      +-..+.+++.+.+..+|...+.++..++..-.++ ..+++++.+...+.+++.+....++.++..+++.
T Consensus       243 i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~  311 (588)
T d1b3ua_         243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCEN  311 (588)
T ss_dssp             THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            3344444444555789999999999988764443 3457899999999998888888888888888763

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=94.28  E-value=0.051  Score=35.20  Aligned_cols=66  Identities=14%  Similarity=-0.002  Sum_probs=48.6

Q ss_pred             CCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHH
Q psy16982         40 LHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQL  112 (116)
Q Consensus        40 i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l  112 (116)
                      +.++.+..-.+.|+++|.++++.+|...+.++..+..       ++.++.+.+.+.++|+.....+..+|..+
T Consensus        12 ~~~~~~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l   77 (276)
T d1oyza_          12 LYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNYIRRDIGAFILGQI   77 (276)
T ss_dssp             HHHHHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHS
T ss_pred             hccccccCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC-------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            3455555666778888888888888888888877653       46777888888888887777777777554

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.15  E-value=0.12  Score=34.91  Aligned_cols=63  Identities=19%  Similarity=0.064  Sum_probs=52.0

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhH-----HHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         51 AIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQ-----IVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        51 ~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~-----Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      .|++.|.++++.++...+.+|..++..+ ++....     -+|.|++++.+++++....++.+|..++.
T Consensus         6 ~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~   73 (457)
T d1xm9a1           6 KAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF   73 (457)
T ss_dssp             HHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence            5788898888999999999999999654 333333     36889999999999999999999998863

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.78  E-value=0.092  Score=36.15  Aligned_cols=99  Identities=12%  Similarity=0.065  Sum_probs=66.9

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHhccCCCc
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP-EVIRVQLAVCVSNIVKHDFPGK   82 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~-~~i~~~l~~~i~~Ia~~d~P~~   82 (116)
                      +.+...+..|+..+++.+...=+           ..+..=.+..+-..|++.|.+.+ ..++...+.++..++..+ ++.
T Consensus        24 s~~~~~~~~a~~~l~~l~s~~~~-----------~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~   91 (434)
T d1q1sc_          24 SNNLESQLQATQAARKLLSREKQ-----------PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQ   91 (434)
T ss_dssp             SSCHHHHHHHHHHHHHHHHSSSC-----------CCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCC-----------chHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhh
Confidence            34778888999999998753111           01111111223335666665444 679999999999998653 211


Q ss_pred             h-----hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         83 W-----TQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        83 W-----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      -     .+.++.+++.+++++......++.+|..++.
T Consensus        92 ~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~  128 (434)
T d1q1sc_          92 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG  128 (434)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             hhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhc
Confidence            1     2468889999999999999999999988874

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.62  E-value=0.16  Score=34.89  Aligned_cols=94  Identities=10%  Similarity=0.083  Sum_probs=64.6

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHH-----HHHHHHHHHhcCcHHHHHHHHHHHHHHHhcc
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAM-----IRDAIVDAVVMAPEVIRVQLAVCVSNIVKHD   78 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~-----IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d   78 (116)
                      +.+..+|..|+-.|.|.....                 ++.+..     +=..+++.+.+.+..++...+.++..++...
T Consensus       283 ~~~~~v~~~a~~~L~~l~~~~-----------------~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~  345 (434)
T d1q1sc_         283 NPKTNIQKEATWTMSNITAGR-----------------QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG  345 (434)
T ss_dssp             CSSHHHHHHHHHHHHHHTTSC-----------------HHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS
T ss_pred             ccchhhhHHHHHHHhhhcccc-----------------chhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcC
Confidence            345667777877777775421                 111111     1235666676777899999999999988764


Q ss_pred             CCCchh-----HHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         79 FPGKWT-----QIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        79 ~P~~Wp-----~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      -++.=.     +.++.|++.++++|.+.+..+|.+|..+++
T Consensus       346 ~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~  386 (434)
T d1q1sc_         346 TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  386 (434)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            332111     237889999999999999999999988875

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.40  E-value=0.28  Score=32.06  Aligned_cols=99  Identities=11%  Similarity=0.012  Sum_probs=66.8

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhccCCCc
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMA-PEVIRVQLAVCVSNIVKHDFPGK   82 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~-~~~i~~~l~~~i~~Ia~~d~P~~   82 (116)
                      +.+..+|..|+-.|.+....+-....         .+   ....+=..|+..+.+. +..++...+.+++.+++..-+..
T Consensus        70 s~~~~vr~~A~~~L~~l~~~~~~~~~---------~~---~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~  137 (264)
T d1xqra1          70 AGAAGLRWRAAQLIGTCSQNVAAIQE---------QV---LGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGL  137 (264)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTCHHHHH---------HH---HHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH---------HH---HHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhH
Confidence            45678999999999888764321100         00   0011223566666544 47899999999999987753332


Q ss_pred             h----hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         83 W----TQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        83 W----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      +    .+-++.++..+.+++......++.+|..++.
T Consensus       138 ~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~  173 (264)
T d1xqra1         138 LQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV  173 (264)
T ss_dssp             HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHh
Confidence            2    2347888899999999888889999988875

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.87  E-value=0.47  Score=31.70  Aligned_cols=94  Identities=15%  Similarity=0.134  Sum_probs=64.3

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHH-----HHHHHHhcCcHHHHHHHHHHHHHHHhcc
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRD-----AIVDAVVMAPEVIRVQLAVCVSNIVKHD   78 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~-----~ll~~l~~~~~~i~~~l~~~i~~Ia~~d   78 (116)
                      +.+..+|..|+-+|+|....+                 ++.|..|++     .|+++|.+++..+|...+.++..++..+
T Consensus        13 ~~~~~~~~~a~~~l~~l~~~~-----------------~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~   75 (457)
T d1xm9a1          13 SQDEKYQAIGAYYIQHTCFQD-----------------ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS   75 (457)
T ss_dssp             SSCTHHHHHHHHHHHHHTSSC-----------------SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCHHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence            456789999999999987442                 233445553     3777777777899999999999998543


Q ss_pred             CCC--ch--hHHHHHHHHhhCC-CChHHHhHHHHHHHHHHh
Q psy16982         79 FPG--KW--TQIVDKVSIYLQN-PDATPWFGALLCLYQLVK  114 (116)
Q Consensus        79 ~P~--~W--p~Ll~~l~~~l~~-~~~~~~~~~L~~L~~l~~  114 (116)
                      -+.  ..  .+-++.++..+.+ .++.....+..+|..+++
T Consensus        76 ~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~  116 (457)
T d1xm9a1          76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS  116 (457)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHh
Confidence            111  11  1236777777654 566777788888887764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.74  E-value=0.097  Score=29.93  Aligned_cols=55  Identities=18%  Similarity=0.163  Sum_probs=43.3

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHH
Q psy16982         51 AIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQL  112 (116)
Q Consensus        51 ~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l  112 (116)
                      .|++.|.+++..+|...+.+++.+..       ++.++.+...+.++|+.....++.+|..+
T Consensus        26 ~L~~~l~d~~~~vR~~a~~~L~~~~~-------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i   80 (111)
T d1te4a_          26 PLLESLSNEDWRIRGAAAWIIGNFQD-------ERAVEPLIKLLEDDSGFVRSGAARSLEQI   80 (111)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHGGGCS-------HHHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHhcch-------hhhHHHHHhhhccchhHHHHHHHHHHHHh
Confidence            46677777778999988877764422       46788888999989999888999988776

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.68  E-value=1.5  Score=33.13  Aligned_cols=98  Identities=8%  Similarity=0.076  Sum_probs=62.9

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC---
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP---   80 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P---   80 (116)
                      +.+..||..|+..|.++..  |...          ...+..-..+=..++..+.+..+.++...+.++..++..--+   
T Consensus       447 d~~~~Vr~~a~~~l~~~~~--~~~~----------~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~  514 (888)
T d1qbkb_         447 DKKALVRSITCWTLSRYAH--WVVS----------QPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV  514 (888)
T ss_dssp             SSCHHHHHHHHHHHHHTHH--HHHS----------SCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSG
T ss_pred             CCCHHHHHHHHHHHHHHHH--Hhhh----------hhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence            3466899999988887754  3211          111111122334566677777789999999999888754333   


Q ss_pred             CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHH
Q psy16982         81 GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLV  113 (116)
Q Consensus        81 ~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~  113 (116)
                      ..-+++++.+...++..+.......+.++..++
T Consensus       515 p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~  547 (888)
T d1qbkb_         515 PYLAYILDTLVFAFSKYQHKNLLILYDAIGTLA  547 (888)
T ss_dssp             GGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            356889999999888766655555555555544

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.42  E-value=2.4  Score=32.76  Aligned_cols=102  Identities=13%  Similarity=0.086  Sum_probs=63.4

Q ss_pred             ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHhccCC---C
Q psy16982          6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP-EVIRVQLAVCVSNIVKHDFP---G   81 (116)
Q Consensus         6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~-~~i~~~l~~~i~~Ia~~d~P---~   81 (116)
                      +...|-.+++.||..+..--.....       ..+.......+-..+...+.+.. ..++.....++..++...-+   .
T Consensus        96 ~~~~r~~~~~~L~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~  168 (1207)
T d1u6gc_          96 KEQLRDISSIGLKTVIGELPPASSG-------SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN  168 (1207)
T ss_dssp             SSHHHHHHHHHHHHHHHHCC------------CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT
T ss_pred             chhhhHHHHHHHHHHHHhccccccc-------chhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHH
Confidence            4456777777777777643322110       13444444444455555554443 57787777888877766322   2


Q ss_pred             chhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         82 KWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        82 ~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      .-+++++.++..+++.+......++.||..+..
T Consensus       169 ~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~  201 (1207)
T d1u6gc_         169 FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVM  201 (1207)
T ss_dssp             THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            457788888888888888777888888887754

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.60  E-value=2.8  Score=30.59  Aligned_cols=101  Identities=12%  Similarity=0.026  Sum_probs=63.5

Q ss_pred             CCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCc
Q psy16982          3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGK   82 (116)
Q Consensus         3 ~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~   82 (116)
                      ++.+..+|..|.-.+.+.+...-..           ...+..+..+-+.+...+..++..++...+.++..++...+..-
T Consensus       184 ~~~~~~v~~~a~~~l~~~~~~~~~~-----------~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~  252 (876)
T d1qgra_         184 EEPSNNVKLAATNALLNSLEFTKAN-----------FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM  252 (876)
T ss_dssp             TCSCHHHHHHHHHHHHHHGGGCHHH-----------HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGC
T ss_pred             cCccHHHHHHHHHHHHHHHHHhhhh-----------hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            3445678888877777766543221           12334455555555555556668899999999999998743333


Q ss_pred             hhH----HHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         83 WTQ----IVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        83 Wp~----Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      .|.    +++.+.....+.+.+....++..+..+++
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~  288 (876)
T d1qgra_         253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            343    34444555666677766777777777665

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.65  E-value=3.2  Score=28.86  Aligned_cols=92  Identities=13%  Similarity=0.211  Sum_probs=63.5

Q ss_pred             ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHH-----HHHHHHHhcCcHHHHHHHHHHHHHHHhccCC
Q psy16982          6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIR-----DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP   80 (116)
Q Consensus         6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK-----~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P   80 (116)
                      +..+|..|+-.|.|.....                 ++.|..+.     ..++..+.+....++..++.++..++...-|
T Consensus       175 ~~~i~~~a~~~L~nia~~~-----------------~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~  237 (503)
T d1wa5b_         175 SVEVKEQAIWALGNVAGDS-----------------TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP  237 (503)
T ss_dssp             CHHHHHHHHHHHHHHHTTC-----------------HHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred             ChhHHHHHHHHHHHHhhhh-----------------HHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCcc
Confidence            4567777777777765432                 22222222     2344555555678888899999999976544


Q ss_pred             -Cch---hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         81 -GKW---TQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        81 -~~W---p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                       ...   .++++.++..+.++|.+.+..++.+|..++.
T Consensus       238 ~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~  275 (503)
T d1wa5b_         238 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD  275 (503)
T ss_dssp             CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcc
Confidence             233   3688999999999999988889999988864

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.21  E-value=4.6  Score=29.23  Aligned_cols=101  Identities=10%  Similarity=0.095  Sum_probs=64.5

Q ss_pred             CCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCc
Q psy16982          3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGK   82 (116)
Q Consensus         3 ~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~   82 (116)
                      ++.+..+|..|.-.|.+.+...-..           .-.......+-+.+.+++..++..+|.....++..|+...+..-
T Consensus       191 ~~~~~~v~~~a~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  259 (861)
T d2bpta1         191 TETSKAVRLAALNALADSLIFIKNN-----------MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFM  259 (861)
T ss_dssp             TCCCHHHHHHHHHHHHHHGGGCHHH-----------HTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGC
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHhHh-----------HHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455678888887777776543211           12334455566667777777778999999999999998754333


Q ss_pred             hhHH---HHHHH-HhhCCCChHHHhHHHHHHHHHHh
Q psy16982         83 WTQI---VDKVS-IYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        83 Wp~L---l~~l~-~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      .|.+   +..+. ....+.++.....++..+..+++
T Consensus       260 ~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~  295 (861)
T d2bpta1         260 KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICE  295 (861)
T ss_dssp             HHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            4432   33332 33345577777778777776654

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.13  E-value=2.2  Score=29.80  Aligned_cols=65  Identities=15%  Similarity=0.106  Sum_probs=48.0

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHhccC--CCc----h-hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         50 DAIVDAVVMAPEVIRVQLAVCVSNIVKHDF--PGK----W-TQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        50 ~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~--P~~----W-p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      ..+++.+.+.+..++...+.+++.++....  ++.    + .++++.++..+.++|.+.+..+|.+|..+++
T Consensus       375 ~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~  446 (503)
T d1wa5b_         375 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK  446 (503)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             chhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            355666666778899999999999987542  211    1 2356778888998999888888888888764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.18  E-value=1.8  Score=30.44  Aligned_cols=99  Identities=16%  Similarity=0.085  Sum_probs=65.8

Q ss_pred             CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHhccCCCc
Q psy16982          4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP-EVIRVQLAVCVSNIVKHDFPGK   82 (116)
Q Consensus         4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~-~~i~~~l~~~i~~Ia~~d~P~~   82 (116)
                      +.+..+|..|+-.+.+..+.......         .+.  ... +=..++..|..++ ..++...+.++..++..+-...
T Consensus        28 ~~~~~v~~~A~~~l~~l~~~~~~~~~---------~~~--~~~-~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~   95 (529)
T d1jdha_          28 DEDQVVVNKAAVMVHQLSKKEASRHA---------IMR--SPQ-MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL   95 (529)
T ss_dssp             CSCHHHHHHHHHHHHHHHTSHHHHHH---------HHT--CHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhccHHHHH---------HHH--hhh-HHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHH
Confidence            34678999999999887654322110         000  011 2235566776644 6788888889999876542211


Q ss_pred             h---hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         83 W---TQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        83 W---p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      +   -+-++.|+..+.++|+.....++.+|..++.
T Consensus        96 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~  130 (529)
T d1jdha_          96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL  130 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Confidence            1   1357899999999999999999999988874

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.85  E-value=2.8  Score=29.34  Aligned_cols=65  Identities=14%  Similarity=0.106  Sum_probs=49.5

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHhccCCC----chhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982         50 DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPG----KWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK  114 (116)
Q Consensus        50 ~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~----~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~  114 (116)
                      ..|+.+|.+++..++...+.++..++...-..    .-.+.++.++..+++++......+..+|..++.
T Consensus       104 ~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  172 (529)
T d1jdha_         104 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY  172 (529)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhh
Confidence            34555555667899999999999998754221    235678999999999999888888888887764

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.16  E-value=2.7  Score=30.60  Aligned_cols=73  Identities=14%  Similarity=0.293  Sum_probs=52.1

Q ss_pred             CCCHhHHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHHHHhccCCCchhHHHHH------HHHhhCCCChHHH
Q psy16982         39 SLHEQDKAMIRDAIVDAVVM----------APEVIRVQLAVCVSNIVKHDFPGKWTQIVDK------VSIYLQNPDATPW  102 (116)
Q Consensus        39 ~i~~~~k~~IK~~ll~~l~~----------~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~------l~~~l~~~~~~~~  102 (116)
                      .+.+++-+.+| .|+++|.+          .++.+-.-.|.=|+..+++ ||.. -..+..      ++++++++|++..
T Consensus       385 kf~e~~~~llk-~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~-~P~g-r~il~~lg~K~~vM~Lm~h~d~~Vr  461 (477)
T d1ho8a_         385 EFKKDNYKIFR-QLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL-LPES-IDVLDKTGGKADIMELLNHSDSRVK  461 (477)
T ss_dssp             GGSSGGGHHHH-HHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHH-CTTH-HHHHHHHSHHHHHHHHTSCSSHHHH
T ss_pred             hhcccchHHHH-HHHHHHhhcccccccccCCCcceeehhhhhHHHHHHH-Ccch-hHHHHHcCcHHHHHHHhcCCCHHHH
Confidence            45566666666 67788753          1245555566777888887 7843 334444      7889999999999


Q ss_pred             hHHHHHHHHHHh
Q psy16982        103 FGALLCLYQLVK  114 (116)
Q Consensus       103 ~~~L~~L~~l~~  114 (116)
                      +-||.|+.+++-
T Consensus       462 ~eAL~avQklm~  473 (477)
T d1ho8a_         462 YEALKATQAIIG  473 (477)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999874