Psyllid ID: psy1702

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
MQNNHYLKPVLPVYKRMSEEELAVYTVLFKTAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITNFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRPHRYRVRVECEQTPGGKVNAGVGVVVGRKKRLTDLLLTFNAENKQI
ccccccccccccHHHHccHHHHHHHHHHHHHcccEEEEEEEccHHcccccccEEEEccccccHHcccccccEEEccEEEEEEcccEEEEEEcccEEEEEEcccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHcccc
cccccHHHcccccEEcccHHHHHHHHHHHHHcccEEEEEEcccHHHHHccccEEEEcccccHHHHccccccccccEEEEEEEcccEEEEEEcccccEEEEcccccEEEEEcccccccccccccHHHHHHHHHHHHHHcHHHHccHHHHHHcccccccccEEEEEEEcccccccccEEEEcccHHHHHHHHHHHHHHHccc
mqnnhylkpvlpvykrmsEEELAVYTVLFKTAGGKVIEKYISSFSELGseyntifnctglgartlcndmhvipvrgqtirikaphitnfykneydtyiipngFDSLVTlggtqnfghvnrcvestdTESILARTEellpgvgacgggqcwvglrphryrVRVEceqtpggkvnagvgvVVGRKKRLTDLLLTFNAENKQI
mqnnhylkpvlpVYKRMSEEELAVYTVLFKTAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITNFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRPHRYRVRVeceqtpggkvnagvgvvvgRKKRLtdllltfnaenkqi
MQNNHYLKPVLPVYKRMSEEELAVYTVLFKTAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITNFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRPHRYRVRVECEQTPggkvnagvgvvvgRKKRLTDLLLTFNAENKQI
*****YLKPVLPVYKRMSEEELAVYTVLFKTAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITNFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRPHRYRVRVECEQTPGGKVNAGVGVVVGRKKRLTDLLLTFN******
*QNNHYLKPVLPVYKRMSEEELAVYTVLFKTAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITNFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRPHRYRVRVECEQTPGGKVNAGVGVVVGRKKRLTDLLLTFN******
MQNNHYLKPVLPVYKRMSEEELAVYTVLFKTAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITNFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRPHRYRVRVECEQTPGGKVNAGVGVVVGRKKRLTDLLLTFNAENKQI
*QNNHYLKPVLPVYKRMSEEELAVYTVLFKTAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITNFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRPHRYRVRVECEQTPGGKVNAGVGVVVGRKKRLTDLLLTFNAENK**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQNNHYLKPVLPVYKRMSEEELAVYTVLFKTAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITNFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRPHRYRVRVECEQTPGGKVNAGVGVVVGRKKRLTDLLLTFNAENKQI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query200 2.2.26 [Sep-21-2011]
Q99489341 D-aspartate oxidase OS=Ho yes N/A 0.67 0.392 0.374 7e-17
A3KCL7341 D-aspartate oxidase OS=Su yes N/A 0.665 0.390 0.376 1e-16
P31228341 D-aspartate oxidase OS=Bo yes N/A 0.67 0.392 0.364 3e-16
Q922Z0341 D-aspartate oxidase OS=Mu yes N/A 0.675 0.395 0.347 2e-14
A8XJ44329 D-amino-acid oxidase 2 OS N/A N/A 0.765 0.465 0.317 3e-14
Q9Y7N4348 D-amino-acid oxidase OS=S yes N/A 0.765 0.439 0.344 3e-13
Q95XG9322 D-amino-acid oxidase 2 OS yes N/A 0.67 0.416 0.306 1e-12
Q556W1346 D-aspartate oxidase OS=Di yes N/A 0.69 0.398 0.340 6e-12
A8WXM1331 D-aspartate oxidase 1 OS= N/A N/A 0.57 0.344 0.316 4e-10
P00371347 D-amino-acid oxidase OS=S no N/A 0.71 0.409 0.342 2e-08
>sp|Q99489|OXDD_HUMAN D-aspartate oxidase OS=Homo sapiens GN=DDO PE=2 SV=1 Back     alignment and function desciption
 Score = 87.0 bits (214), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 80/139 (57%), Gaps = 5/139 (3%)

Query: 29  FKTAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITN 88
            K +GG  + + I    EL   ++ + NC+GLG+R L  D  + PVRGQ ++++AP + +
Sbjct: 154 IKGSGGWTLTRRIEDLWELHPSFDIVVNCSGLGSRQLAGDSKIFPVRGQVLQVQAPWVEH 213

Query: 89  FYKNEYD-TYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGV-GACGG 146
           F ++    TYI P    S VTLGGT+  G  N   ++ ++  IL+R   L P + GAC  
Sbjct: 214 FIRDGSGLTYIYPG--TSHVTLGGTRQKGDWNLSPDAENSREILSRCCALEPSLHGACNI 271

Query: 147 GQCWVGLRPHRYRVRVECE 165
            +  VGLRP+R  VR++ E
Sbjct: 272 REK-VGLRPYRPGVRLQTE 289
Selectively catalyzes the oxidative deamination of D-aspartate and its N-methylated derivative, N-methyl D-aspartate.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: 4EC: .EC: 3EC: .EC: 1
>sp|A3KCL7|OXDD_PIG D-aspartate oxidase OS=Sus scrofa GN=DDO PE=2 SV=1 Back     alignment and function description
>sp|P31228|OXDD_BOVIN D-aspartate oxidase OS=Bos taurus GN=DDO PE=1 SV=2 Back     alignment and function description
>sp|Q922Z0|OXDD_MOUSE D-aspartate oxidase OS=Mus musculus GN=Ddo PE=2 SV=1 Back     alignment and function description
>sp|A8XJ44|OXDA2_CAEBR D-amino-acid oxidase 2 OS=Caenorhabditis briggsae GN=CBG13882 PE=3 SV=1 Back     alignment and function description
>sp|Q9Y7N4|OXDA_SCHPO D-amino-acid oxidase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dao1 PE=3 SV=1 Back     alignment and function description
>sp|Q95XG9|OXDA2_CAEEL D-amino-acid oxidase 2 OS=Caenorhabditis elegans GN=Y69A2AR.5 PE=1 SV=2 Back     alignment and function description
>sp|Q556W1|OXDD_DICDI D-aspartate oxidase OS=Dictyostelium discoideum GN=ddo-1 PE=3 SV=1 Back     alignment and function description
>sp|A8WXM1|OXDD1_CAEBR D-aspartate oxidase 1 OS=Caenorhabditis briggsae GN=CBG04460 PE=3 SV=1 Back     alignment and function description
>sp|P00371|OXDA_PIG D-amino-acid oxidase OS=Sus scrofa GN=DAO PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query200
357619467 370 d-amino acid oxidase [Danaus plexippus] 0.835 0.451 0.378 4e-28
157119089 334 d-amino acid oxidase [Aedes aegypti] gi| 0.84 0.502 0.387 5e-28
195433084 334 GK23907 [Drosophila willistoni] gi|19416 0.8 0.479 0.381 8e-28
157133215 334 d-amino acid oxidase [Aedes aegypti] gi| 0.8 0.479 0.392 8e-28
58387114 334 AGAP005323-PB [Anopheles gambiae str. PE 0.86 0.514 0.38 9e-28
66509729 336 PREDICTED: d-aspartate oxidase-like [Api 0.83 0.494 0.375 2e-27
170062616236 d-amino acid oxidase [Culex quinquefasci 0.805 0.682 0.380 3e-27
170047888 338 d-amino acid oxidase [Culex quinquefasci 0.8 0.473 0.382 3e-27
321461793 343 hypothetical protein DAPPUDRAFT_231376 [ 0.79 0.460 0.389 3e-27
194758004 335 GF11092 [Drosophila ananassae] gi|190622 0.8 0.477 0.370 5e-27
>gi|357619467|gb|EHJ72030.1| d-amino acid oxidase [Danaus plexippus] Back     alignment and taxonomy information
 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/193 (37%), Positives = 108/193 (55%), Gaps = 26/193 (13%)

Query: 4   NHYLKPVLPVYKRMSEEELAV----------YTVL--------------FKTAGGKVIEK 39
           NH ++ ++PVY+ + ++EL +          Y+ L              F   GGK+I +
Sbjct: 143 NHLIEDLVPVYRAVDDDELKICGDGWKYGSYYSTLKIKCSRYLPWAEQMFIEKGGKIITQ 202

Query: 40  YISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITNFYKNEYDTYII 99
            I +FS L S+Y+ +FNCTGLGA+TLC D  ++ +RGQ I+++AP +   +  +YDTY+I
Sbjct: 203 KIEAFSSL-SKYDLVFNCTGLGAKTLCQDNDLVSIRGQVIKVRAPWLKMAFYGDYDTYVI 261

Query: 100 PNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRPHRYR 159
           P G D + TLGG + +   NR V   D  +I+ R  +LLP +         VGLRPHR  
Sbjct: 262 P-GLDGVATLGGVRQYDSYNRQVCKHDAAAIMERCCDLLPALKKADVVCHRVGLRPHRVP 320

Query: 160 VRVECEQTPGGKV 172
           VRVE E   G +V
Sbjct: 321 VRVEPELVDGVRV 333

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|157119089|ref|XP_001659331.1| d-amino acid oxidase [Aedes aegypti] gi|108875482|gb|EAT39707.1| AAEL008512-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|195433084|ref|XP_002064545.1| GK23907 [Drosophila willistoni] gi|194160630|gb|EDW75531.1| GK23907 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|157133215|ref|XP_001662804.1| d-amino acid oxidase [Aedes aegypti] gi|108870913|gb|EAT35138.1| AAEL012674-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|58387114|ref|XP_315337.2| AGAP005323-PB [Anopheles gambiae str. PEST] gi|158293988|ref|XP_001688634.1| AGAP005323-PA [Anopheles gambiae str. PEST] gi|55238139|gb|EAA11815.2| AGAP005323-PB [Anopheles gambiae str. PEST] gi|157015356|gb|EDO63640.1| AGAP005323-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|66509729|ref|XP_625069.1| PREDICTED: d-aspartate oxidase-like [Apis mellifera] Back     alignment and taxonomy information
>gi|170062616|ref|XP_001866747.1| d-amino acid oxidase [Culex quinquefasciatus] gi|167880481|gb|EDS43864.1| d-amino acid oxidase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|170047888|ref|XP_001851437.1| d-amino acid oxidase [Culex quinquefasciatus] gi|167870135|gb|EDS33518.1| d-amino acid oxidase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|321461793|gb|EFX72821.1| hypothetical protein DAPPUDRAFT_231376 [Daphnia pulex] Back     alignment and taxonomy information
>gi|194758004|ref|XP_001961252.1| GF11092 [Drosophila ananassae] gi|190622550|gb|EDV38074.1| GF11092 [Drosophila ananassae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query200
FB|FBgn0033543335 CG12338 [Drosophila melanogast 0.69 0.411 0.4 8.6e-30
ZFIN|ZDB-GENE-080204-116339 zgc:172341 "zgc:172341" [Danio 0.655 0.386 0.380 1.1e-18
UNIPROTKB|F1RT00341 DDO "D-aspartate oxidase" [Sus 0.665 0.390 0.391 7.9e-18
UNIPROTKB|Q99489341 DDO "D-aspartate oxidase" [Hom 0.665 0.390 0.376 1.8e-17
UNIPROTKB|A3KCL7341 DDO "D-aspartate oxidase" [Sus 0.665 0.390 0.384 4e-17
UNIPROTKB|E1C9D0342 DDO "Uncharacterized protein" 0.67 0.391 0.372 2.7e-16
FB|FBgn0031860341 CG11236 [Drosophila melanogast 0.68 0.398 0.387 4.4e-16
UNIPROTKB|F1MP99341 DDO "D-aspartate oxidase" [Bos 0.67 0.392 0.364 4.4e-16
UNIPROTKB|P31228341 DDO "D-aspartate oxidase" [Bos 0.67 0.392 0.364 4.4e-16
UNIPROTKB|F1PAL6340 DDO "Uncharacterized protein" 0.675 0.397 0.326 7.4e-16
FB|FBgn0033543 CG12338 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 277 (102.6 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
 Identities = 56/140 (40%), Positives = 87/140 (62%)

Query:    26 TVLFKTAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPH 85
             T  F   GG+V+ ++++SF E+    + + NCTG+GA+ LC D H++P+RGQ ++++AP 
Sbjct:   151 TKKFLENGGEVVRQHVNSFFEVPQNIDLLLNCTGMGAKELCGDQHLVPIRGQVLKVRAPW 210

Query:    86 ITNFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACG 145
             +   +  +YDTY++P GF++ VTLGG + F   N      D+ +I  R  +LLP +    
Sbjct:   211 VKTAFYGDYDTYVLP-GFET-VTLGGCRQFDSYNTEWCKYDSMAIRERCYDLLPSLRKAE 268

Query:   146 GGQCWVGLRPHRYRVRVECE 165
               +  VGLRPHR  VRVE E
Sbjct:   269 IVRECVGLRPHRSVVRVEPE 288
GO:0008445 "D-aspartate oxidase activity" evidence=ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0003884 "D-amino-acid oxidase activity" evidence=IEA
ZFIN|ZDB-GENE-080204-116 zgc:172341 "zgc:172341" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1RT00 DDO "D-aspartate oxidase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q99489 DDO "D-aspartate oxidase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A3KCL7 DDO "D-aspartate oxidase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1C9D0 DDO "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0031860 CG11236 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1MP99 DDO "D-aspartate oxidase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P31228 DDO "D-aspartate oxidase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PAL6 DDO "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query200
COG0665387 COG0665, DadA, Glycine/D-amino acid oxidases (deam 2e-06
TIGR02352337 TIGR02352, thiamin_ThiO, glycine oxidase ThiO 2e-05
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] Back     alignment and domain information 
 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 30/119 (25%), Positives = 42/119 (35%), Gaps = 17/119 (14%)

Query: 53  TIFNCTGLGARTLCN-----DMHVIPVRGQTIRIKAPHITNFYK--------NEYDTYII 99
            +    G  A  L        + + PVRGQ +  + P               ++   YI 
Sbjct: 203 KVVLAAGAWAGELAATLGELPLPLRPVRGQALTTEPPEGLLADGLAPVVLVVDDGGGYIR 262

Query: 100 PNGFDSLVTLGGTQNFG---HVNRCVESTDTESILARTEELLPGVGACGGGQCWVGLRP 155
           P G D  + +GGT   G     +   E      +L     LLPG+   G    W GLRP
Sbjct: 263 PRG-DGRLRVGGTDEEGGDDPSDPEREDLVIAELLRVARALLPGLADAGIEAAWAGLRP 320

Length = 387
>gnl|CDD|233831 TIGR02352, thiamin_ThiO, glycine oxidase ThiO Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 200
KOG3923|consensus342 100.0
TIGR02352337 thiamin_ThiO glycine oxidase ThiO. This family con 99.9
TIGR03197381 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri 99.87
PRK01747662 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans 99.83
PRK00711416 D-amino acid dehydrogenase small subunit; Validate 99.81
TIGR01373407 soxB sarcosine oxidase, beta subunit family, heter 99.79
TIGR03377 516 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase 99.79
PRK12409410 D-amino acid dehydrogenase small subunit; Provisio 99.77
PRK13369 502 glycerol-3-phosphate dehydrogenase; Provisional 99.77
PRK11259376 solA N-methyltryptophan oxidase; Provisional 99.76
PRK11101 546 glpA sn-glycerol-3-phosphate dehydrogenase subunit 99.76
COG0665387 DadA Glycine/D-amino acid oxidases (deaminating) [ 99.75
TIGR03364365 HpnW_proposed FAD dependent oxidoreductase TIGR033 99.74
TIGR03329460 Phn_aa_oxid putative aminophosphonate oxidoreducta 99.74
PLN02464 627 glycerol-3-phosphate dehydrogenase 99.73
PF01266358 DAO: FAD dependent oxidoreductase; InterPro: IPR00 99.72
PRK12266 508 glpD glycerol-3-phosphate dehydrogenase; Reviewed 99.72
TIGR01377380 soxA_mon sarcosine oxidase, monomeric form. Sarcos 99.69
PRK11728393 hydroxyglutarate oxidase; Provisional 99.67
COG0578 532 GlpA Glycerol-3-phosphate dehydrogenase [Energy pr 99.61
KOG2844|consensus 856 99.58
KOG2853|consensus509 99.53
KOG0042|consensus 680 99.36
KOG2852|consensus380 98.81
COG0579429 Predicted dehydrogenase [General function predicti 98.78
KOG2820|consensus399 98.53
TIGR01320483 mal_quin_oxido malate:quinone-oxidoreductase. This 98.2
PRK13339497 malate:quinone oxidoreductase; Reviewed 98.2
PTZ00383497 malate:quinone oxidoreductase; Provisional 98.06
PRK05257494 malate:quinone oxidoreductase; Validated 97.99
PLN02697 529 lycopene epsilon cyclase 97.95
PF05834374 Lycopene_cycl: Lycopene cyclase protein; InterPro: 97.37
TIGR01790388 carotene-cycl lycopene cyclase family protein. Thi 97.35
KOG2665|consensus453 97.32
PLN02463 447 lycopene beta cyclase 97.1
TIGR02032295 GG-red-SF geranylgeranyl reductase family. This mo 97.1
PRK06185407 hypothetical protein; Provisional 95.5
TIGR03378419 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase 93.85
KOG0404|consensus322 92.05
TIGR01789370 lycopene_cycl lycopene cyclase. This model represe 91.53
PF06039488 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro 91.34
COG0644396 FixC Dehydrogenases (flavoproteins) [Energy produc 91.32
PRK08773392 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 91.11
PRK08244 493 hypothetical protein; Provisional 88.2
TIGR02023388 BchP-ChlP geranylgeranyl reductase. This model rep 87.06
COG1252405 Ndh NADH dehydrogenase, FAD-containing subunit [En 85.11
TIGR02028398 ChlP geranylgeranyl reductase. This model represen 84.17
PRK07608388 ubiquinone biosynthesis hydroxylase family protein 80.37
>KOG3923|consensus Back     alignment and domain information 
Probab=100.00  E-value=5.2e-35  Score=235.37  Aligned_cols=192  Identities=32%  Similarity=0.523  Sum_probs=169.3

Q ss_pred             CCCCCCccccCCceecChhhhhHhH------------------------HHHHHcCcEEEEEecccccccc-CCCCEEEE
Q psy1702           2 QNNHYLKPVLPVYKRMSEEELAVYT------------------------VLFKTAGGKVIEKYISSFSELG-SEYNTIFN   56 (200)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~Gv~~~~~~V~~l~~~~-g~ad~VV~   56 (200)
                      |+.++|+|.|+|||+|+++||+.||                        +++.++|++|.+++|.++++.. .++|.|||
T Consensus       110 ~~~~~w~diV~~fr~l~e~EL~~f~~~~~~G~~~Tt~~sE~~~ylpyl~k~l~e~Gvef~~r~v~~l~E~~~~~~DVivN  189 (342)
T KOG3923|consen  110 DQQRSWGDIVYGFRDLTERELLGFPDYSTYGIHFTTYLSEGPKYLPYLKKRLTENGVEFVQRRVESLEEVARPEYDVIVN  189 (342)
T ss_pred             hhhhhHHhhhhhhhcCCHHHhcCCCCccccceeEEEeeccchhhhHHHHHHHHhcCcEEEEeeeccHHHhccCCCcEEEE
Confidence            3457999999999999999998752                        8999999999999999998876 38999999


Q ss_pred             cCCCCcccccCCCCceeecceEEEEeCCCcceEEecC-CeEEEEeCCCCCeEEEccceecCCCCCCCChHHHHHHHHHHH
Q psy1702          57 CTGLGARTLCNDMHVIPVRGQTIRIKAPHITNFYKNE-YDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTE  135 (200)
Q Consensus        57 AaG~~s~~L~~~~pl~p~rGq~~~~~~~~~~~~i~~~-~~~y~~p~~~~g~~~iG~t~~~~~~~~~~~~~~~~~ll~~~~  135 (200)
                      |+|.|+.+|+.+-.|+|+|||++.++.|+.+++++.+ +..|++|- .+. +++||+.+.++||.+++.++...+++++.
T Consensus       190 CtGL~a~~L~gDd~~yPiRGqVl~V~ApWvkhf~~~D~~~ty~iP~-~~~-V~lGg~~Q~g~w~~ei~~~D~~dIl~rc~  267 (342)
T KOG3923|consen  190 CTGLGAGKLAGDDDLYPIRGQVLKVDAPWVKHFIYRDFSRTYIIPG-TES-VTLGGTKQEGNWNLEITDEDRRDILERCC  267 (342)
T ss_pred             CCccccccccCCcceeeccceEEEeeCCceeEEEEecCCccEEecC-Cce-EEEccccccCcccCcCChhhHHHHHHHHH
Confidence            9999999999876699999999999999999988733 32599998 666 99999999999999999999999999999


Q ss_pred             hhCCCCCCCCCcceeEeecCCCCCceeeeEEeC-----------CCeeccceeecHHHHHHHHHHHHHHhh
Q psy1702         136 ELLPGVGACGGGQCWVGLRPHRYRVRVECEQTP-----------GGKVNAGVGVVVGRKKRLTDLLLTFNA  195 (200)
Q Consensus       136 ~~~P~l~~~~v~~~w~G~Rp~tpD~~i~~~~~~-----------~g~~~~G~~~a~~~A~~~a~li~~~~~  195 (200)
                      ++.|+|..+++++.|+|+||.++..+++.+...           .||..+|+++.+|||..++.|+.....
T Consensus       268 aL~P~l~~a~ii~E~vGlRP~Rk~vRlE~e~~~~~~k~~~VVHnYGHgG~G~Tl~wGtAlea~~Lv~~~l~  338 (342)
T KOG3923|consen  268 ALEPSLRHAEIIREWVGLRPGRKQVRLEAELRTRGGKRLTVVHNYGHGGNGFTLGWGTALEAAKLVLDALG  338 (342)
T ss_pred             HhCcccccceehhhhhcccCCCCceeeeeeeecCCCccceeEeeccCCCCceecccchHHHHHHHHHHHhh
Confidence            999999999999999999999999777765321           345558899999999999999887643

>TIGR02352 thiamin_ThiO glycine oxidase ThiO Back     alignment and domain information
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain Back     alignment and domain information
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed Back     alignment and domain information
>PRK00711 D-amino acid dehydrogenase small subunit; Validated Back     alignment and domain information
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form Back     alignment and domain information
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit Back     alignment and domain information
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional Back     alignment and domain information
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK11259 solA N-methyltryptophan oxidase; Provisional Back     alignment and domain information
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional Back     alignment and domain information
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 Back     alignment and domain information
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase Back     alignment and domain information
>PLN02464 glycerol-3-phosphate dehydrogenase Back     alignment and domain information
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 Back     alignment and domain information
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form Back     alignment and domain information
>PRK11728 hydroxyglutarate oxidase; Provisional Back     alignment and domain information
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>KOG2844|consensus Back     alignment and domain information
>KOG2853|consensus Back     alignment and domain information
>KOG0042|consensus Back     alignment and domain information
>KOG2852|consensus Back     alignment and domain information
>COG0579 Predicted dehydrogenase [General function prediction only] Back     alignment and domain information
>KOG2820|consensus Back     alignment and domain information
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase Back     alignment and domain information
>PRK13339 malate:quinone oxidoreductase; Reviewed Back     alignment and domain information
>PTZ00383 malate:quinone oxidoreductase; Provisional Back     alignment and domain information
>PRK05257 malate:quinone oxidoreductase; Validated Back     alignment and domain information
>PLN02697 lycopene epsilon cyclase Back     alignment and domain information
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins Back     alignment and domain information
>TIGR01790 carotene-cycl lycopene cyclase family protein Back     alignment and domain information
>KOG2665|consensus Back     alignment and domain information
>PLN02463 lycopene beta cyclase Back     alignment and domain information
>TIGR02032 GG-red-SF geranylgeranyl reductase family Back     alignment and domain information
>PRK06185 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit Back     alignment and domain information
>KOG0404|consensus Back     alignment and domain information
>TIGR01789 lycopene_cycl lycopene cyclase Back     alignment and domain information
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle Back     alignment and domain information
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] Back     alignment and domain information
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated Back     alignment and domain information
>PRK08244 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02023 BchP-ChlP geranylgeranyl reductase Back     alignment and domain information
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] Back     alignment and domain information
>TIGR02028 ChlP geranylgeranyl reductase Back     alignment and domain information
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query200
1kif_A347 D-Amino Acid Oxidase From Pig Kidney Length = 347 3e-09
1an9_A340 D-Amino Acid Oxidase Complex With O-Aminobenzoate L 3e-09
3g3e_A351 Crystal Structure Of Human D-Amino Acid Oxidase In 6e-08
2du8_A347 Crystal Structure Of Human D-Amino Acid Oxidase Len 7e-08
1c0k_A363 Crystal Structure Analysis Of D-Amino Acid Oxidase 5e-05
>pdb|1KIF|A Chain A, D-Amino Acid Oxidase From Pig Kidney Length = 347 Back     alignment and structure 
Iteration: 1

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 68/142 (47%), Gaps = 10/142 (7%)
Query: 33  GGKVIEKYISSFSELG-SEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIKAPHITNFY- 90
           G K   + + SF E+     + I NCTG+ A  L  D  + P RGQ I++ AP + NF  
Sbjct: 156 GVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFII 215
Query: 91  -----KNEYDT-YIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGAC 144
                +  Y++ YIIP G  + VTLGGT   G+ N      D  +I      L P +   
Sbjct: 216 THDLERGIYNSPYIIP-GLQA-VTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDA 273
Query: 145 GGGQCWVGLRPHRYRVRVECEQ 166
                + G RP R +VR+E EQ
Sbjct: 274 KIVGEYTGFRPVRPQVRLEREQ 295
>pdb|1AN9|A Chain A, D-Amino Acid Oxidase Complex With O-Aminobenzoate Length = 340 Back     alignment and structure
>pdb|3G3E|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase In Complex With Hydroxyquinolin-2(1h) Length = 351 Back     alignment and structure
>pdb|2DU8|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase Length = 347 Back     alignment and structure
>pdb|1C0K|A Chain A, Crystal Structure Analysis Of D-Amino Acid Oxidase In Complex With L-Lactate Length = 363 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query200
3g3e_A351 D-amino-acid oxidase; FAD, flavoprotein, oxidoredu 2e-27
1c0p_A363 D-amino acid oxidase; alpha-beta-alpha motif, flav 2e-25
3pvc_A689 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 1e-04
1ryi_A382 Glycine oxidase; flavoprotein, protein-inhibitor c 5e-04
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351 Back     alignment and structure
 Score =  105 bits (262), Expect = 2e-27
 Identities = 48/163 (29%), Positives = 67/163 (41%), Gaps = 10/163 (6%)

Query: 22  LAVYTVLFKTAGGKVIEKYISSFSELGSE-YNTIFNCTGLGARTLCNDMHVIPVRGQTIR 80
           L   T      G K  ++ + SF E+  E  + I NCTG+ A  L  D  + P RGQ ++
Sbjct: 145 LQWLTERLTERGVKFFQRKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIMK 204

Query: 81  IKAPHITNFYK-------NEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILAR 133
           + AP + +F              YIIP      VTLGG    G+ +      D  +I   
Sbjct: 205 VDAPWMKHFILTHDPERGIYNSPYIIPGTQT--VTLGGIFQLGNWSELNNIQDHNTIWEG 262

Query: 134 TEELLPGVGACGGGQCWVGLRPHRYRVRVECEQTPGGKVNAGV 176
              L P +          G RP R ++R+E EQ   G  N  V
Sbjct: 263 CCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEV 305
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363 Back     alignment and structure
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* Length = 689 Back     alignment and structure
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query200
3g3e_A351 D-amino-acid oxidase; FAD, flavoprotein, oxidoredu 99.94
1c0p_A363 D-amino acid oxidase; alpha-beta-alpha motif, flav 99.91
3nyc_A381 D-arginine dehydrogenase; FAD, imino-arginine, oxi 99.84
3pvc_A689 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 99.83
3ps9_A676 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 99.83
3dme_A369 Conserved exported protein; structural genomics, P 99.83
1y56_B382 Sarcosine oxidase; dehydrogenase, protein-protein 99.83
3axb_A448 Putative oxidoreductase; dinucleotide-binding fold 99.82
2gf3_A389 MSOX, monomeric sarcosine oxidase; flavoprotein ox 99.81
1ryi_A382 Glycine oxidase; flavoprotein, protein-inhibitor c 99.8
2uzz_A372 N-methyl-L-tryptophan oxidase; N-methyltryptophan 99.79
2gag_B405 Heterotetrameric sarcosine oxidase beta-subunit; f 99.77
3c4n_A405 Uncharacterized protein DR_0571; alpha-beta protei 99.76
2oln_A397 NIKD protein; flavoprotein, rossmann fold, oxidore 99.74
2qcu_A 501 Aerobic glycerol-3-phosphate dehydrogenase; glycer 99.74
2rgh_A 571 Alpha-glycerophosphate oxidase; flavoprotein oxida 99.73
3da1_A 561 Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 99.71
1pj5_A 830 N,N-dimethylglycine oxidase; channelling, FAD bind 99.71
3dje_A438 Fructosyl amine: oxygen oxidoreductase; fructosyl- 99.69
3cgv_A397 Geranylgeranyl reductase related protein; NP_39399 97.42
2weu_A 511 Tryptophan 5-halogenase; regioselectivity, antifun 97.01
3nix_A421 Flavoprotein/dehydrogenase; structural genomics, P 96.65
2e4g_A 550 Tryptophan halogenase; flavin-binding, rebeccamyci 95.88
3oz2_A397 Digeranylgeranylglycerophospholipid reductase; str 95.66
3i3l_A 591 Alkylhalidase CMLS; flavin-dependent halogenase, c 95.3
2aqj_A 538 Tryptophan halogenase, pRNA; flavin-dependent halo 94.49
3atr_A 453 Conserved archaeal protein; saturating double bond 94.36
3fmw_A 570 Oxygenase; mithramycin, baeyer-villiger, flavin bi 88.39
3nks_A477 Protoporphyrinogen oxidase; FAD containing protein 87.37
2gmh_A 584 Electron transfer flavoprotein-ubiquinone oxidored 81.43
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Back     alignment and structure
Probab=99.94  E-value=1.4e-26  Score=193.90  Aligned_cols=192  Identities=25%  Similarity=0.344  Sum_probs=155.3

Q ss_pred             CCCccccCCceecChhhhh---Hh------------H--------HHHHHcCcEEEEEeccccccccC-CCCEEEEcCCC
Q psy1702           5 HYLKPVLPVYKRMSEEELA---VY------------T--------VLFKTAGGKVIEKYISSFSELGS-EYNTIFNCTGL   60 (200)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~---~~------------~--------~~~~~~Gv~~~~~~V~~l~~~~g-~ad~VV~AaG~   60 (200)
                      .||++...+++.++.+|+.   .+            |        ++|+++|+++++.+|++++...+ .||.||+|+|+
T Consensus       105 ~~~~~~~~~~~~l~~~e~~~~p~~~~~~~~~~~~v~p~~~~~~l~~~~~~~Gv~i~~~~V~~i~~~~~~~a~~VV~A~G~  184 (351)
T 3g3e_A          105 PSWKDTVLGFRKLTPRELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVNCTGV  184 (351)
T ss_dssp             CGGGGTSEEEEECCHHHHTTCTTCCEEEEEEEEEECHHHHHHHHHHHHHHTTCEEEECCCCCHHHHHHTTCSEEEECCGG
T ss_pred             cCHHHhCCCceECCHHHhccCCCCceEEEecceEEcHHHHHHHHHHHHHHCCCEEEEEEeCCHHHhhcCCCCEEEECCCc
Confidence            4677777789999999872   11            2        78888999998877888875443 79999999999


Q ss_pred             CcccccCCCCceeecceEEEEeCCCcceEEe-c------CCeEEEEeCCCCCeEEEccceecCCCCCCCChHHHHHHHHH
Q psy1702          61 GARTLCNDMHVIPVRGQTIRIKAPHITNFYK-N------EYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILAR  133 (200)
Q Consensus        61 ~s~~L~~~~pl~p~rGq~~~~~~~~~~~~i~-~------~~~~y~~p~~~~g~~~iG~t~~~~~~~~~~~~~~~~~ll~~  133 (200)
                      |+..|+.++|+.|.|||++.++++.+.+.++ .      +...|++|. .++ +++|++.+..+++..++.+..+.+++.
T Consensus       185 ~s~~l~~~~~l~p~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~-~~~-~~iGg~~~~~~~~~~~~~~~~~~l~~~  262 (351)
T 3g3e_A          185 WAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPG-TQT-VTLGGIFQLGNWSELNNIQDHNTIWEG  262 (351)
T ss_dssp             GGGGTSCCTTCEEEEEEEEEEECTTCCSEEEECCTTTCTTCSCEEEEC-SSC-EEEECCCEETCCCCSCCHHHHHHHHHH
T ss_pred             ChHhhcCCCceeecCCcEEEEeCCCcceEEEeccccCCCCceeEEEeC-CCc-EEEeeeeecCCCCCCCCHHHHHHHHHH
Confidence            9999988899999999999998765554443 1      235899999 774 999999988788888899999999999


Q ss_pred             HHhhCCCCCCCCCcceeEeecCCCCC-ce----eeeEEe------CCCeeccceeecHHHHHHHHHHHHHHhhhcc
Q psy1702         134 TEELLPGVGACGGGQCWVGLRPHRYR-VR----VECEQT------PGGKVNAGVGVVVGRKKRLTDLLLTFNAENK  198 (200)
Q Consensus       134 ~~~~~P~l~~~~v~~~w~G~Rp~tpD-~~----i~~~~~------~~g~~~~G~~~a~~~A~~~a~li~~~~~~~~  198 (200)
                      +.+++|.+.+.++.+.|+|+||+||| |.    ++..+.      ..|+...|+++++++|+.++++|.+...+.|
T Consensus       263 ~~~~~P~l~~~~i~~~w~G~r~~t~D~p~~~~~ig~~~~~~~~~~~~G~~g~G~~~ap~~g~~la~li~~~~~~~~  338 (351)
T 3g3e_A          263 CCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKK  338 (351)
T ss_dssp             HHHHCGGGGGCEEEEEEEEEEEECSSCEEEEEEECCSSSCEEEEEEECCTTCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCCccCCcEeeeeEeeCCCCCCccceeeeccCCCCCCeEEEEeCCCcchHhhhHHHHHHHHHHHHHHHHhcc
Confidence            99999999889999999999999999 43    332211      1344446888999999999999999876643
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Back     alignment and structure
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Back     alignment and structure
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* Back     alignment and structure
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* Back     alignment and structure
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Back     alignment and structure
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Back     alignment and structure
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Back     alignment and structure
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Back     alignment and structure
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Back     alignment and structure
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Back     alignment and structure
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Back     alignment and structure
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Back     alignment and structure
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Back     alignment and structure
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* Back     alignment and structure
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* Back     alignment and structure
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Back     alignment and structure
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Back     alignment and structure
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* Back     alignment and structure
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Back     alignment and structure
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A Back     alignment and structure
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} Back     alignment and structure
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Back     alignment and structure
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* Back     alignment and structure
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Back     alignment and structure
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Back     alignment and structure
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Back     alignment and structure
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 200
d1ryia288 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillu 3e-12
d1kifa293 d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus 1e-11
d1c0pa295 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodot 1e-11
d1kifa1246 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N 3e-07
d1c0pa1268 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida 8e-06
>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 88 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 57.7 bits (139), Expect = 3e-12
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 72  IPVRGQTIRIKAPHIT-NFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESI 130
           +PV+G+ + +    I           YI+P      + +G T   G  +   +    ES+
Sbjct: 2   LPVKGECLSVWNDDIPLTKTLYHDHCYIVPRK-SGRLVVGATMKPGDWSETPDLGGLESV 60

Query: 131 LARTEELLPGVGACGGGQCWVGLRP 155
           + + + +LP +      + W GLRP
Sbjct: 61  MKKAKTMLPAIQNMKVDRFWAGLRP 85
>d1kifa2 d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823]} Length = 93 Back     information, alignment and structure
>d1c0pa2 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodotorula gracilis [TaxId: 5286]} Length = 95 Back     information, alignment and structure
>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246 Back     information, alignment and structure
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query200
d1ryia288 Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} 99.79
d1kifa293 D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823 99.78
d1c0pa295 D-aminoacid oxidase {Rhodotorula gracilis [TaxId: 99.72
d1kifa1246 D-aminoacid oxidase, N-terminal domain {Pig (Sus s 99.28
d1pj5a2305 N,N-dimethylglycine oxidase {Arthrobacter globifor 98.66
d1c0pa1268 D-aminoacid oxidase, N-terminal domain {Rhodotorul 98.43
d1pj5a3119 N,N-dimethylglycine oxidase {Arthrobacter globifor 97.91
d1ryia1276 Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} 97.35
d2gf3a1281 Sarcosine oxidase {Bacillus sp., strain b0618 [Tax 97.29
d2i0za1251 Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] 86.67
d3lada2119 Dihydrolipoamide dehydrogenase {Azotobacter vinela 82.23
>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.79  E-value=1.4e-19  Score=121.62  Aligned_cols=86  Identities=22%  Similarity=0.464  Sum_probs=77.3

Q ss_pred             ceeecceEEEEeCCC--cceEEecCCeEEEEeCCCCCeEEEccceecCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCcc
Q psy1702          71 VIPVRGQTIRIKAPH--ITNFYKNEYDTYIIPNGFDSLVTLGGTQNFGHVNRCVESTDTESILARTEELLPGVGACGGGQ  148 (200)
Q Consensus        71 l~p~rGq~~~~~~~~--~~~~i~~~~~~y~~p~~~~g~~~iG~t~~~~~~~~~~~~~~~~~ll~~~~~~~P~l~~~~v~~  148 (200)
                      |+|+|||++.++.+.  +.+++..++ .|++|+ .+|.++||+|++.+++|..++.+..+.|++++.+++|.+.++++++
T Consensus         1 l~PvKGq~l~v~~~~~~~~~~i~~~~-~yiip~-~~g~~~iG~T~e~~~~d~~~~~~~~~~l~~~a~~~~P~l~~~~v~~   78 (88)
T d1ryia2           1 FLPVKGECLSVWNDDIPLTKTLYHDH-CYIVPR-KSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDR   78 (88)
T ss_dssp             CEEEEEEEEEEECCSSCCCSEEEETT-EEEEEC-TTSEEEEECCCEETCCCCSCCHHHHHHHHHHHHHHCGGGGGSEEEE
T ss_pred             CCCCCcEEEEEECCCCccCCEEeCCC-EEEEEC-CCCCEEEccEEEECCCCCCCCHHHHHHHHHHHHHHCCCcCCCcEeE
Confidence            689999999998753  455665554 899999 8888999999999999999999999999999999999999999999


Q ss_pred             eeEeecCCCC
Q psy1702         149 CWVGLRPHRY  158 (200)
Q Consensus       149 ~w~G~Rp~tp  158 (200)
                      +|+|+||+|.
T Consensus        79 ~waGlRP~t~   88 (88)
T d1ryia2          79 FWAGLRPGTK   88 (88)
T ss_dssp             EEEEEEEECS
T ss_pred             EEEeeCCCCC
Confidence            9999999884
>d1kifa2 d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1c0pa2 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodotorula gracilis [TaxId: 5286]} Back     information, alignment and structure
>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Back     information, alignment and structure
>d1pj5a3 d.16.1.5 (A:220-338) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Back     information, alignment and structure
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Back     information, alignment and structure
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure