Psyllid ID: psy1704

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
MFEVFSEFGVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTK
Secondary Structure (PSIPRED)
ccEEEEEcccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHcccccEEEEccccccccccccccEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHccccEEEEEEcccccccHHHHcccEccccccccccccHccc
Coil and Loop (DISEMBL)
MFEVFSefgvhsaaqscpanpkvmgsnhKVAILGAGIIGLSTALELqrrfpncdvtviadkfnmdttsdgaaglfepspnfmgpdlettk
Flexible Loop (DISEMBL)
MFEVFSEFGVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSdgaaglfepspnfmgpdlettk
Low Complexity Region (SEG)
MFEVFSEFGVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTK
Disordered region (IsUnstruct)
***********************MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD*************************
Disordered Region (DISOPRED)
*FEVFSEFGVHSAAQSCPAN*KVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPN**********
Disordered Region (DISEMBL)
*************AQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTK
Disordered Region (DISPRO)
*FEVFSEFGVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNF*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFEVFSEFGVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	90	2.2.26 [Sep-21-2011]
Q95XG9	322	D-amino-acid oxidase 2 OS	yes	N/A	0.544	0.152	0.632	9e-13
A8XJ44	329	D-amino-acid oxidase 2 OS	N/A	N/A	0.544	0.148	0.591	1e-10
Q99489	341	D-aspartate oxidase OS=Ho	yes	N/A	0.544	0.143	0.530	1e-09
P31228	341	D-aspartate oxidase OS=Bo	yes	N/A	0.655	0.173	0.467	3e-09
A3KCL7	341	D-aspartate oxidase OS=Su	yes	N/A	0.544	0.143	0.510	2e-08
Q922Z0	341	D-aspartate oxidase OS=Mu	yes	N/A	0.533	0.140	0.541	2e-08
P00371	347	D-amino-acid oxidase OS=S	no	N/A	0.544	0.141	0.490	2e-06
P14920	347	D-amino-acid oxidase OS=H	no	N/A	0.544	0.141	0.471	2e-06
A2V9Y8	347	D-amino-acid oxidase OS=M	N/A	N/A	0.544	0.141	0.452	7e-06
P18894	345	D-amino-acid oxidase OS=M	no	N/A	0.544	0.142	0.5	8e-06

>sp|Q95XG9|OXDA2_CAEEL D-amino-acid oxidase 2 OS=Caenorhabditis elegans GN=Y69A2AR.5 PE=1 SV=2

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 42/49 (85%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77
          K+A+LGAGI G+++AL +Q R PNC+VT+IA+KF+ +TTSD AAGL EP
Sbjct: 3  KIAVLGAGINGIASALAIQERLPNCEVTIIAEKFSPNTTSDVAAGLIEP 51

Could act as a detoxifying agent which removes D-amino acids accumulated during aging (By similarity). Acts on a variety of D-amino acids with a preference for those having small hydrophobic side chains followed by those bearing polar, aromatic, and basic groups. Does not act on acidic amino acids.
Caenorhabditis elegans (taxid: 6239)
EC: 1EC: .EC: 4EC: .EC: 3EC: .EC: 3

>sp|A8XJ44|OXDA2_CAEBR D-amino-acid oxidase 2 OS=Caenorhabditis briggsae GN=CBG13882 PE=3 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/49 (59%), Positives = 40/49 (81%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77
          ++ +LGAGI+G+STAL +Q R P+  VT+IA+KF+ +TTSD AAGL EP
Sbjct: 3  RICVLGAGIMGVSTALAIQERIPDSVVTIIAEKFSPNTTSDVAAGLIEP 51

Could act as a detoxifying agent which removes D-amino acids accumulated during aging. Acts on a variety of D-amino acids with a preference for those having small hydrophobic side chains followed by those bearing polar, aromatic, and basic groups. Does not act on acidic amino acids.

Caenorhabditis briggsae (taxid: 6238)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 3

>sp|Q99489|OXDD_HUMAN D-aspartate oxidase OS=Homo sapiens GN=DDO PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/49 (53%), Positives = 38/49 (77%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77
          ++A++GAG++GLSTA+ + +  P C VT+I+DKF  DTTSD AAG+  P
Sbjct: 5  RIAVVGAGVVGLSTAVCISKLVPRCSVTIISDKFTPDTTSDVAAGMLIP 53

Selectively catalyzes the oxidative deamination of D-aspartate and its N-methylated derivative, N-methyl D-aspartate.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 1

>sp|P31228|OXDD_BOVIN D-aspartate oxidase OS=Bos taurus GN=DDO PE=1 SV=2

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 43/62 (69%), Gaps = 3/62 (4%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 88
          ++A++GAG++GLSTA+ + +  P C +TVI+DKF  +TTSD AAG+  P P +  PD   
Sbjct: 5  RIAVVGAGVMGLSTAVCISKMVPGCSITVISDKFTPETTSDVAAGMLIP-PTY--PDTPI 61

Query: 89 TK 90
           K
Sbjct: 62 QK 63

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 1

>sp|A3KCL7|OXDD_PIG D-aspartate oxidase OS=Sus scrofa GN=DDO PE=2 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 38/49 (77%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77
          ++A++GAG++GLSTA+ + +  P C +TVI+DKF  +TTSD AAG+  P
Sbjct: 5  RIAVVGAGVMGLSTAVCIFKLVPGCSITVISDKFTPETTSDVAAGMLIP 53

Selectively catalyzes the oxidative deamination of D-aspartate and its N-methylated derivative, N-methyl D-aspartate.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 1

>sp|Q922Z0|OXDD_MOUSE D-aspartate oxidase OS=Mus musculus GN=Ddo PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 36/48 (75%)

Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77
          +A++GAG+IGLSTA  + +  P C VTVI+D+F  DTTS+ AAG+  P
Sbjct: 6  IAVVGAGVIGLSTAACISQLVPGCTVTVISDRFTPDTTSNVAAGMLIP 53

Selectively catalyzes the oxidative deamination of D-aspartate and its N-methylated derivative, N-methyl D-aspartate.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 1

>sp|P00371|OXDA_PIG D-amino-acid oxidase OS=Sus scrofa GN=DAO PE=1 SV=2

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 4/53 (7%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNC----DVTVIADKFNMDTTSDGAAGLFEP 77
          +V ++GAG+IGLSTAL +  R+ +     DV V AD+F   TT+D AAGL++P
Sbjct: 2  RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQP 54

Regulates the level of the neuromodulator D-serine in the brain. Has high activity towards D-DOPA and contributes to dopamine synthesis. Could act as a detoxifying agent which removes D-amino acids accumulated during aging. Acts on a variety of D-amino acids with a preference for those having small hydrophobic side chains followed by those bearing polar, aromatic, and basic groups. Does not act on acidic amino acids.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 3

>sp|P14920|OXDA_HUMAN D-amino-acid oxidase OS=Homo sapiens GN=DAO PE=1 SV=3

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 4/53 (7%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNC----DVTVIADKFNMDTTSDGAAGLFEP 77
          +V ++GAG+IGLSTAL +  R+ +     D+ V AD+F   TT+D AAGL++P
Sbjct: 2  RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQP 54

Regulates the level of the neuromodulator D-serine in the brain. Has high activity towards D-DOPA and contributes to dopamine synthesis. Could act as a detoxifying agent which removes D-amino acids accumulated during aging. Acts on a variety of D-amino acids with a preference for those having small hydrophobic side chains followed by those bearing polar, aromatic, and basic groups. Does not act on acidic amino acids.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 3

>sp|A2V9Y8|OXDA_MACFA D-amino-acid oxidase OS=Macaca fascicularis GN=DAO PE=2 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 4/53 (7%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNC----DVTVIADKFNMDTTSDGAAGLFEP 77
          +V ++GAG+IGLSTAL +  R+ +     D+ V AD+F   TT+D AAG ++P
Sbjct: 2  RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGFWQP 54

Regulates the level of the neuromodulator D-serine in the brain. Has high activity towards D-DOPA and contributes to dopamine synthesis. Could act as a detoxifying agent which removes D-amino acids accumulated during aging. Acts on a variety of D-amino acids with a preference for those having small hydrophobic side chains followed by those bearing polar, aromatic, and basic groups. Does not act on acidic amino acids.

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 3

>sp|P18894|OXDA_MOUSE D-amino-acid oxidase OS=Mus musculus GN=Dao PE=1 SV=3

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 3/52 (5%)

Query: 29 KVAILGAGIIGLSTALELQRRF-PN--CDVTVIADKFNMDTTSDGAAGLFEP 77
          +VA++GAG+IGLSTAL +  R+ P     + + AD+F   TTSD AAGL++P
Sbjct: 2  RVAVIGAGVIGLSTALCIHERYHPTQPLHMKIYADRFTPFTTSDVAAGLWQP 53

Regulates the level of the neuromodulator D-serine in the brain. Has high activity towards D-DOPA and contributes to dopamine synthesis. Could act as a detoxifying agent which removes D-amino acids accumulated during aging. Acts on a variety of D-amino acids with a preference for those having small hydrophobic side chains followed by those bearing polar, aromatic, and basic groups. Does not act on acidic amino acids.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
195333213	335	GM20499 [Drosophila sechellia] gi|194125	0.666	0.179	0.616	9e-14
195433084	334	GK23907 [Drosophila willistoni] gi|19416	0.666	0.179	0.583	1e-13
201065547	352	FI02859p [Drosophila melanogaster]	0.733	0.187	0.560	1e-13
125811087	335	GA11563 [Drosophila pseudoobscura pseudo	0.688	0.185	0.564	2e-13
195582254	335	GD25962 [Drosophila simulans] gi|1941929	0.666	0.179	0.6	2e-13
195483654	335	GE13080 [Drosophila yakuba] gi|194176477	0.666	0.179	0.6	2e-13
194758004	335	GF11092 [Drosophila ananassae] gi|190622	0.666	0.179	0.6	2e-13
157119089	334	d-amino acid oxidase [Aedes aegypti] gi|	0.677	0.182	0.557	3e-13
157133215	334	d-amino acid oxidase [Aedes aegypti] gi|	0.677	0.182	0.557	3e-13
195026504	335	GH20617 [Drosophila grimshawi] gi|193902	0.666	0.179	0.566	4e-13

>gi|195333213|ref|XP_002033286.1| GM20499 [Drosophila sechellia] gi|194125256|gb|EDW47299.1| GM20499 [Drosophila sechellia]

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/60 (61%), Positives = 45/60 (75%)

Query: 31 AILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTK 90
           +LG+GIIGL+TALELQR FP   V+VIAD+FN DT S  AAG+F P  +FMGP  E T+
Sbjct: 4  GVLGSGIIGLTTALELQREFPTARVSVIADRFNEDTVSYVAAGIFRPGTSFMGPTQEITQ 63

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195433084|ref|XP_002064545.1| GK23907 [Drosophila willistoni] gi|194160630|gb|EDW75531.1| GK23907 [Drosophila willistoni]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 46/60 (76%)

Query: 31 AILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTK 90
           +LG+GIIGL+TALELQR FP+  V+++AD+FN DT S  AAG+F P  +FMGP  E T+
Sbjct: 4  GVLGSGIIGLTTALELQREFPSAQVSIVADRFNEDTVSYVAAGIFRPGTSFMGPTQEITQ 63

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|201065547|gb|ACH92183.1| FI02859p [Drosophila melanogaster]

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 47/66 (71%)

Query: 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGP 84
          GS     +LG+GIIGL+TALELQ+ FP   V+VIAD+FN DT S  AAG+F P  +FMGP
Sbjct: 15 GSRMHFGVLGSGIIGLTTALELQKEFPTARVSVIADRFNEDTVSYVAAGIFRPGTSFMGP 74

Query: 85 DLETTK 90
            + T+
Sbjct: 75 TQKITQ 80

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125811087|ref|XP_001361743.1| GA11563 [Drosophila pseudoobscura pseudoobscura] gi|195153509|ref|XP_002017668.1| GL17186 [Drosophila persimilis] gi|54636919|gb|EAL26322.1| GA11563 [Drosophila pseudoobscura pseudoobscura] gi|194113464|gb|EDW35507.1| GL17186 [Drosophila persimilis]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/62 (56%), Positives = 48/62 (77%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 88
          +  +LG+GIIGL+TALELQ++FP+  V++IAD+FN DT S  AAG+F P  +FMGP  E 
Sbjct: 2  QFGVLGSGIIGLTTALELQQQFPSAQVSIIADRFNEDTVSYVAAGIFRPGTSFMGPTQEI 61

Query: 89 TK 90
          T+
Sbjct: 62 TQ 63

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195582254|ref|XP_002080943.1| GD25962 [Drosophila simulans] gi|194192952|gb|EDX06528.1| GD25962 [Drosophila simulans]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 45/60 (75%)

Query: 31 AILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTK 90
           +LG+GIIGL+TALELQ+ FP   V+VIAD+FN DT S  AAG+F P  +FMGP  E T+
Sbjct: 4  GVLGSGIIGLTTALELQKEFPTARVSVIADRFNEDTVSYVAAGIFRPGTSFMGPTQEITQ 63

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195483654|ref|XP_002090376.1| GE13080 [Drosophila yakuba] gi|194176477|gb|EDW90088.1| GE13080 [Drosophila yakuba]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 45/60 (75%)

Query: 31 AILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTK 90
           +LG+GIIGL+TALELQ+ FP   V+VIAD+FN DT S  AAG+F P  +FMGP  E T+
Sbjct: 4  GVLGSGIIGLTTALELQKEFPTARVSVIADRFNEDTVSYVAAGIFRPGTSFMGPTQEITQ 63

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194758004|ref|XP_001961252.1| GF11092 [Drosophila ananassae] gi|190622550|gb|EDV38074.1| GF11092 [Drosophila ananassae]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 45/60 (75%)

Query: 31 AILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTK 90
           +LG+GIIGL+TALELQ+ FP   V+VIAD+FN DT S  AAG+F P  +FMGP  E T+
Sbjct: 4  GVLGSGIIGLTTALELQKEFPTARVSVIADRFNEDTVSYVAAGIFRPGTSFMGPTQEITQ 63

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157119089|ref|XP_001659331.1| d-amino acid oxidase [Aedes aegypti] gi|108875482|gb|EAT39707.1| AAEL008512-PA [Aedes aegypti]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 46/61 (75%)

Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETT 89
          + ++GAG++GL+TALELQR F N +VT++AD+F  DT SD AAGLF P  +F GP  E T
Sbjct: 3  LCVIGAGVVGLTTALELQREFRNANVTILADRFEQDTCSDVAAGLFRPGTSFSGPTEEIT 62

Query: 90 K 90
          +
Sbjct: 63 R 63

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157133215|ref|XP_001662804.1| d-amino acid oxidase [Aedes aegypti] gi|108870913|gb|EAT35138.1| AAEL012674-PA [Aedes aegypti]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 46/61 (75%)

Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETT 89
          + ++GAG++GL+TALELQR F N +VT++AD+F  DT SD AAGLF P  +F GP  E T
Sbjct: 3  LCVIGAGVVGLTTALELQREFRNANVTILADRFEQDTCSDVAAGLFRPGTSFSGPTEEIT 62

Query: 90 K 90
          +
Sbjct: 63 R 63

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195026504|ref|XP_001986271.1| GH20617 [Drosophila grimshawi] gi|193902271|gb|EDW01138.1| GH20617 [Drosophila grimshawi]

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 45/60 (75%)

Query: 31 AILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTK 90
           +LG+GIIGL+TALELQ +FP   +++IAD+FN DT S  AAG+F P  +FMGP  E T+
Sbjct: 4  GVLGSGIIGLTTALELQEQFPTAQISIIADRFNEDTVSYVAAGIFRPGTSFMGPTQEITQ 63

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
FB|FBgn0033543	335	CG12338 [Drosophila melanogast	0.655	0.176	0.593	2.2e-13
WB|WBGene00022076	322	daao-1 [Caenorhabditis elegans	0.544	0.152	0.632	2.5e-12
UNIPROTKB|F2Z2E0	110	DDO "D-aspartate oxidase" [Hom	0.688	0.563	0.460	7.4e-11
UNIPROTKB|Q99489	341	DDO "D-aspartate oxidase" [Hom	0.544	0.143	0.530	8.3e-10
ZFIN|ZDB-GENE-080204-116	339	zgc:172341 "zgc:172341" [Danio	0.611	0.162	0.517	1.1e-09
UNIPROTKB|F1MP99	341	DDO "D-aspartate oxidase" [Bos	0.655	0.173	0.467	1.1e-09
UNIPROTKB|P31228	341	DDO "D-aspartate oxidase" [Bos	0.655	0.173	0.467	1.1e-09
RGD|1595123	82	Ddo "D-aspartate oxidase" [Rat	0.577	0.634	0.509	1.8e-09
UNIPROTKB|F1PAL6	340	DDO "Uncharacterized protein"	0.544	0.144	0.591	6.2e-09
UNIPROTKB|J9P7G3	351	DDO "Uncharacterized protein"	0.544	0.139	0.591	6.7e-09

FB|FBgn0033543 CG12338 [Drosophila melanogaster (taxid:7227)]

 Score = 179 (68.1 bits), Expect = 2.2e-13, P = 2.2e-13
 Identities = 35/59 (59%), Positives = 45/59 (76%)

Query:    32 ILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTK 90
             +LG+GIIGL+TALELQ+ FP   V+VIAD+FN DT S  AAG+F P  +FMGP  + T+
Sbjct:     5 VLGSGIIGLTTALELQKEFPTARVSVIADRFNEDTVSYVAAGIFRPGTSFMGPTQKITQ 63

GO:0008445 "D-aspartate oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0003884 "D-amino-acid oxidase activity" evidence=IEA

WB|WBGene00022076 daao-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 169 (64.5 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 31/49 (63%), Positives = 42/49 (85%)

Query:    29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77
             K+A+LGAGI G+++AL +Q R PNC+VT+IA+KF+ +TTSD AAGL EP
Sbjct:     3 KIAVLGAGINGIASALAIQERLPNCEVTIIAEKFSPNTTSDVAAGLIEP 51

GO:0003884 "D-amino-acid oxidase activity" evidence=IEA;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016641 "oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor" evidence=IEA

UNIPROTKB|F2Z2E0 DDO "D-aspartate oxidase" [Homo sapiens (taxid:9606)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 29/63 (46%), Positives = 44/63 (69%)

Query:    15 QSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGL 74
             Q C    ++M +  ++A++GAG++GLSTA+ + +  P C VT+I+DKF  DTTSD AAG+
Sbjct:    20 QDCFFRDRLMDTA-RIAVVGAGVVGLSTAVCISKLVPRCSVTIISDKFTPDTTSDVAAGM 78

Query:    75 FEP 77
               P
Sbjct:    79 LIP 81

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016641 "oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor" evidence=IEA

UNIPROTKB|Q99489 DDO "D-aspartate oxidase" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 8.3e-10, P = 8.3e-10
 Identities = 26/49 (53%), Positives = 38/49 (77%)

Query:    29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77
             ++A++GAG++GLSTA+ + +  P C VT+I+DKF  DTTSD AAG+  P
Sbjct:     5 RIAVVGAGVVGLSTAVCISKLVPRCSVTIISDKFTPDTTSDVAAGMLIP 53

GO:0003884 "D-amino-acid oxidase activity" evidence=IEA

GO:0006531 "aspartate metabolic process" evidence=IEA

GO:0007320 "insemination" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0042445 "hormone metabolic process" evidence=IEA

GO:0005777 "peroxisome" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0006533 "aspartate catabolic process" evidence=IDA

GO:0008445 "D-aspartate oxidase activity" evidence=IDA

GO:0005102 "receptor binding" evidence=IPI

GO:0048037 "cofactor binding" evidence=IDA

GO:0019478 "D-amino acid catabolic process" evidence=IDA

ZFIN|ZDB-GENE-080204-116 zgc:172341 "zgc:172341" [Danio rerio (taxid:7955)]

 Score = 146 (56.5 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 30/58 (51%), Positives = 42/58 (72%)

Query:    29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDL 86
             KVA++GAG++GLSTA+ +    P C VT+I++KF+  TTSDGAAG+  P   F  PD+
Sbjct:     5 KVAVVGAGVVGLSTAVCIAETLPYCSVTLISEKFSPHTTSDGAAGILLPK-EF--PDI 59

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0003884 "D-amino-acid oxidase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016641 "oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1MP99 DDO "D-aspartate oxidase" [Bos taurus (taxid:9913)]

 Score = 146 (56.5 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 29/62 (46%), Positives = 43/62 (69%)

Query:    29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 88
             ++A++GAG++GLSTA+ + +  P C +TVI+DKF  +TTSD AAG+  P P +  PD   
Sbjct:     5 RIAVVGAGVMGLSTAVCISKMVPGCSITVISDKFTPETTSDVAAGMLIP-PTY--PDTPI 61

Query:    89 TK 90
              K
Sbjct:    62 QK 63

GO:0048037 "cofactor binding" evidence=IEA

GO:0042445 "hormone metabolic process" evidence=IEA

GO:0019478 "D-amino acid catabolic process" evidence=IEA

GO:0008445 "D-aspartate oxidase activity" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007320 "insemination" evidence=IEA

GO:0006533 "aspartate catabolic process" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0003884 "D-amino-acid oxidase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P31228 DDO "D-aspartate oxidase" [Bos taurus (taxid:9913)]

 Score = 146 (56.5 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 29/62 (46%), Positives = 43/62 (69%)

Query:    29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 88
             ++A++GAG++GLSTA+ + +  P C +TVI+DKF  +TTSD AAG+  P P +  PD   
Sbjct:     5 RIAVVGAGVMGLSTAVCISKMVPGCSITVISDKFTPETTSDVAAGMLIP-PTY--PDTPI 61

Query:    89 TK 90
              K
Sbjct:    62 QK 63

GO:0005777 "peroxisome" evidence=IEA

GO:0008445 "D-aspartate oxidase activity" evidence=IEA

GO:0003884 "D-amino-acid oxidase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

RGD|1595123 Ddo "D-aspartate oxidase" [Rattus norvegicus (taxid:10116)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 27/53 (50%), Positives = 39/53 (73%)

Query:    29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNF 81
             ++A++GAG+IGLSTA  + +  P C VTVI+D+F  DTTS+ AAG+  P P +
Sbjct:     5 RIAVVGAGVIGLSTAACVSQLVPRCSVTVISDRFTPDTTSNVAAGMLIP-PTY 56

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005102 "receptor binding" evidence=ISO

GO:0006531 "aspartate metabolic process" evidence=ISO

GO:0006533 "aspartate catabolic process" evidence=ISO

GO:0007320 "insemination" evidence=ISO

GO:0007625 "grooming behavior" evidence=ISO

GO:0008445 "D-aspartate oxidase activity" evidence=ISO

GO:0016641 "oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor" evidence=IEA

GO:0019478 "D-amino acid catabolic process" evidence=ISO

GO:0042445 "hormone metabolic process" evidence=ISO

GO:0048037 "cofactor binding" evidence=ISO

UNIPROTKB|F1PAL6 DDO "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 139 (54.0 bits), Expect = 6.2e-09, P = 6.2e-09
 Identities = 29/49 (59%), Positives = 36/49 (73%)

Query:    29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77
             +VA++GAG++GLSTAL L R  P C VTV+ADK    TTSD AAG+  P
Sbjct:     5 RVAVVGAGVVGLSTALCLSRLGPPCAVTVVADKVTPHTTSDVAAGMLIP 53

GO:0048037 "cofactor binding" evidence=IEA

GO:0042445 "hormone metabolic process" evidence=IEA

GO:0019478 "D-amino acid catabolic process" evidence=IEA

GO:0008445 "D-aspartate oxidase activity" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007320 "insemination" evidence=IEA

GO:0006533 "aspartate catabolic process" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

UNIPROTKB|J9P7G3 DDO "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 139 (54.0 bits), Expect = 6.7e-09, P = 6.7e-09
 Identities = 29/49 (59%), Positives = 36/49 (73%)

Query:    29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77
             +VA++GAG++GLSTAL L R  P C VTV+ADK    TTSD AAG+  P
Sbjct:     5 RVAVVGAGVVGLSTALCLSRLGPPCAVTVVADKVTPHTTSDVAAGMLIP 53

GO:0016641 "oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q99489	OXDD_HUMAN	1, ., 4, ., 3, ., 1	0.5306	0.5444	0.1436	yes	N/A
Q95XG9	OXDA2_CAEEL	1, ., 4, ., 3, ., 3	0.6326	0.5444	0.1521	yes	N/A
Q922Z0	OXDD_MOUSE	1, ., 4, ., 3, ., 1	0.5416	0.5333	0.1407	yes	N/A
A3KCL7	OXDD_PIG	1, ., 4, ., 3, ., 1	0.5102	0.5444	0.1436	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	90
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	5e-10
PRK11728	393	PRK11728, PRK11728, hydroxyglutarate oxidase; Prov	2e-08
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	3e-08
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	8e-08
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	4e-07
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	4e-06
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	5e-06
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	4e-05
PRK07538	413	PRK07538, PRK07538, hypothetical protein; Provisio	7e-04
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	8e-04
PRK00711	416	PRK00711, PRK00711, D-amino acid dehydrogenase sma	0.001
TIGR03329	460	TIGR03329, Phn_aa_oxid, putative aminophosphonate	0.001
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	0.001
PRK08132	547	PRK08132, PRK08132, FAD-dependent oxidoreductase;	0.001
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	0.002
PRK05945	575	PRK05945, sdhA, succinate dehydrogenase flavoprote	0.002
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	0.002
COG0029	518	COG0029, NadB, Aspartate oxidase [Coenzyme metabol	0.002
PLN02487	569	PLN02487, PLN02487, zeta-carotene desaturase	0.002
PRK06847	375	PRK06847, PRK06847, hypothetical protein; Provisio	0.002
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	0.003
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	0.003
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	0.004

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 53.1 bits (128), Expect = 5e-10
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77
           V ++G GI+GLSTA EL RR     VT++         S   AGL  P
Sbjct: 1  DVVVIGGGIVGLSTAYELARR--GLSVTLLERGDLASGASGRNAGLLHP 47

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional

 Score = 49.4 bits (119), Expect = 2e-08
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
            I+G GI+GLSTA++LQ R+P   + V+
Sbjct: 5  FVIIGGGIVGLSTAMQLQERYPGARIAVL 33

Length = 393

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 48.5 bits (116), Expect = 3e-08
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
           K+AI+G GI GLS A  LQ+  P+ +VT+ 
Sbjct: 1  MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLF 31

Length = 444

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 47.6 bits (113), Expect = 8e-08
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          M     V I+G GI+GLS A  L  R    DVTV+
Sbjct: 1  MSMKMDVVIIGGGIVGLSAAYYLAERGA--DVTVL 33

Length = 387

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
           KVAI+G GI GLS A  L ++ P+ D+T++
Sbjct: 1  KKVAIIGGGITGLSAAYRLHKKGPDADITLL 31

Length = 451

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 42.8 bits (101), Expect = 4e-06
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77
            VAI+GAG  GL+ AL L R     DVT++ ++   +    G      P
Sbjct: 3  LDVAIVGAGPAGLALALALARA--GLDVTLL-ERAPRELLERGRGIALSP 49

Length = 387

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 42.3 bits (100), Expect = 5e-06
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          + V I+G GI+G +TA EL    P+  V ++
Sbjct: 4  YDVVIIGGGIMGAATAYELSEYEPDLSVALL 34

Length = 429

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTV 57
          K+AI+G GI GL+ A  L +R    +VTV
Sbjct: 1  KIAIVGGGIAGLAAAYRLAKR--GHEVTV 27

Length = 434

>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 28 HKVAILGAGIIGLSTALELQRR 49
           KV I G GI GL+ AL L +R
Sbjct: 1  MKVLIAGGGIGGLTLALTLHQR 22

Length = 413

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score = 36.2 bits (84), Expect = 8e-04
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTV 57
          +VAI GAG+ GL+ A EL       DVT+
Sbjct: 2  RVAIAGAGLAGLAAAYELADA--GYDVTL 28

Length = 485

>gnl|CDD|234819 PRK00711, PRK00711, D-amino acid dehydrogenase small subunit; Validated

 Score = 35.9 bits (84), Expect = 0.001
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          +V +LG+G+IG+++A  L +     +VTVI
Sbjct: 2  RVVVLGSGVIGVTSAWYLAQA--GHEVTVI 29

Length = 416

>gnl|CDD|132372 TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase

 Score = 35.9 bits (83), Expect = 0.001
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 13 AAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAA 72
            Q  PA P V  +   V I+G G  GL TA+ ++++ P  DV V+      D    GA+
Sbjct: 10 LEQPDPAPPLVGDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVL----EADLCGAGAS 65

Query: 73 G 73
          G
Sbjct: 66 G 66

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. Length = 460

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61
          + V I+G G  GL+ A+   R      V +I + 
Sbjct: 4  YDVIIIGGGPAGLTAAIYAARA--GLKVVLILEG 35

Length = 305

>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 9/22 (40%), Positives = 17/22 (77%)

Query: 28 HKVAILGAGIIGLSTALELQRR 49
          H V ++GAG +GL+ A++L ++
Sbjct: 24 HPVVVVGAGPVGLALAIDLAQQ 45

Length = 547

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 20  NPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTV 57
            P  +GS  KVA++GAG  GL+ A  L R      VTV
Sbjct: 532 KPAGIGSRKKVAVIGAGPAGLAAAYFLARA--GHPVTV 567

Length = 1019

>gnl|CDD|180319 PRK05945, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed

 Score = 35.1 bits (81), Expect = 0.002
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIA 59
          H V I+G G+ G   ALE++R  P+ DV V+A
Sbjct: 4  HDVVIVGGGLAGCRAALEIKRLDPSLDVAVVA 35

Length = 575

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 29  KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
             AI+G GI G + AL L RR     VT+ 
Sbjct: 262 DAAIIGGGIAGAALALALARR--GWQVTLY 289

Length = 662

>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism]

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 73
             +  V I+G+G+ GL+ AL L    P+  VTV+      +++S  A G
Sbjct: 4  DFEHPDVLIIGSGLAGLTAALSLA---PSFRVTVLTKGPLGESSSYWAQG 50

Length = 518

>gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase

 Score = 35.2 bits (81), Expect = 0.002
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 18 PANPKVMGSNHKVAILGAGIIGLSTALEL 46
          P      G   KVAI+GAG+ G+STA+EL
Sbjct: 66 PEPEAYKGPKLKVAIIGAGLAGMSTAVEL 94

Length = 569

>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional

 Score = 34.8 bits (81), Expect = 0.002
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61
          M +  KV I+G GI GLS A+ L+R     D+  I  +
Sbjct: 1  MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38

Length = 375

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          M +   V I+GAG  GL+ A EL +R     VTV+
Sbjct: 1  MTNKKSVVIIGAGPAGLTAAYELLKR--GYPVTVL 33

Length = 479

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 32.9 bits (76), Expect = 0.003
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          +V ++G G IGL  A  L +      VTV+
Sbjct: 1  RVVVVGGGYIGLEFASALAKL--GSKVTVV 28

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 34.1 bits (79), Expect = 0.004
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61
           ++ ILG G  GLS A  L R+ P+ ++T++  +
Sbjct: 4  KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRR 37

Length = 405

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.04
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.04
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.94
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.89
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.89
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.88
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.85
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.84
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.83
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.82
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.81
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.79
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.77
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.74
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.73
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.73
PLN02661	357	Putative thiazole synthesis	98.71
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.69
PRK10157	428	putative oxidoreductase FixC; Provisional	98.68
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.68
PRK10015	429	oxidoreductase; Provisional	98.67
PRK07804	541	L-aspartate oxidase; Provisional	98.67
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.66
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.66
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.66
COG0579	429	Predicted dehydrogenase [General function predicti	98.65
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.65
PRK09126	392	hypothetical protein; Provisional	98.64
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.64
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.63
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.63
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.63
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.62
PRK08274	466	tricarballylate dehydrogenase; Validated	98.62
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.62
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.61
PRK07121	492	hypothetical protein; Validated	98.61
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.61
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.6
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.6
PRK08163	396	salicylate hydroxylase; Provisional	98.59
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.59
PRK07208	479	hypothetical protein; Provisional	98.59
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.58
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.58
PRK07045	388	putative monooxygenase; Reviewed	98.58
PRK05257	494	malate:quinone oxidoreductase; Validated	98.57
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.57
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.56
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.55
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.55
PRK07236	386	hypothetical protein; Provisional	98.55
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.54
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.54
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.54
PRK07233	434	hypothetical protein; Provisional	98.54
PRK08013	400	oxidoreductase; Provisional	98.54
PRK06185	407	hypothetical protein; Provisional	98.54
PLN02576	496	protoporphyrinogen oxidase	98.54
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.53
PRK09077	536	L-aspartate oxidase; Provisional	98.53
PRK07395	553	L-aspartate oxidase; Provisional	98.53
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.53
PRK06184	502	hypothetical protein; Provisional	98.53
PRK08244	493	hypothetical protein; Provisional	98.53
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.52
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.52
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.52
PRK06847	375	hypothetical protein; Provisional	98.51
PRK06126	545	hypothetical protein; Provisional	98.51
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.51
PLN02268	435	probable polyamine oxidase	98.51
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.51
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.51
PLN02815	594	L-aspartate oxidase	98.51
PRK06753	373	hypothetical protein; Provisional	98.5
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.5
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.5
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.49
PRK06370	463	mercuric reductase; Validated	98.49
PRK08071	510	L-aspartate oxidase; Provisional	98.49
KOG1399|consensus	448		98.49
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.49
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.49
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.49
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.48
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.48
KOG0029|consensus	501		98.48
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.48
PRK07190	487	hypothetical protein; Provisional	98.47
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.47
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.47
COG2081	408	Predicted flavoproteins [General function predicti	98.47
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.47
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.47
PRK06475	400	salicylate hydroxylase; Provisional	98.47
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.46
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.46
PRK06834	488	hypothetical protein; Provisional	98.46
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.45
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.45
KOG3923|consensus	342		98.45
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.44
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.44
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.44
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.44
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.44
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.44
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.43
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.42
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.42
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.41
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.41
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.4
PRK05868	372	hypothetical protein; Validated	98.4
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.4
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.4
PRK07588	391	hypothetical protein; Provisional	98.39
PRK07538	413	hypothetical protein; Provisional	98.39
PRK08401	466	L-aspartate oxidase; Provisional	98.38
PRK11445	351	putative oxidoreductase; Provisional	98.37
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.37
PRK12839	572	hypothetical protein; Provisional	98.37
PRK06116	450	glutathione reductase; Validated	98.37
PRK08294	634	phenol 2-monooxygenase; Provisional	98.37
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.36
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.36
KOG2614|consensus	420		98.36
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.36
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.35
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.35
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.35
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.34
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.34
PLN02852	491	ferredoxin-NADP+ reductase	98.34
PRK06175	433	L-aspartate oxidase; Provisional	98.33
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.33
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.33
PLN02568	539	polyamine oxidase	98.33
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.33
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.33
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.32
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.32
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.32
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.31
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.31
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.3
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.3
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.3
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.29
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.29
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.29
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.29
PRK07512	513	L-aspartate oxidase; Provisional	98.29
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.28
COG3349	485	Uncharacterized conserved protein [Function unknow	98.28
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.28
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.28
PRK12831	464	putative oxidoreductase; Provisional	98.28
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.28
PLN02463	447	lycopene beta cyclase	98.27
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.27
PLN02985	514	squalene monooxygenase	98.26
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.26
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.25
PRK14694	468	putative mercuric reductase; Provisional	98.25
PRK06996	398	hypothetical protein; Provisional	98.25
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.25
PTZ00367	567	squalene epoxidase; Provisional	98.24
KOG2820|consensus	399		98.24
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.24
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.24
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.24
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.23
TIGR02053	463	MerA mercuric reductase. This model represents the	98.23
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.22
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.22
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.22
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.22
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.21
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.21
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.2
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.2
KOG2852|consensus	380		98.2
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.2
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.18
PTZ00188	506	adrenodoxin reductase; Provisional	98.16
PTZ00058	561	glutathione reductase; Provisional	98.16
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.16
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.15
PLN02697	529	lycopene epsilon cyclase	98.14
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.14
PRK10262	321	thioredoxin reductase; Provisional	98.14
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.13
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.13
PLN02612	567	phytoene desaturase	98.13
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.12
PLN02676	487	polyamine oxidase	98.11
PRK13748	561	putative mercuric reductase; Provisional	98.1
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.1
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.1
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.09
KOG2665|consensus	453		98.09
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.08
PRK08275	554	putative oxidoreductase; Provisional	98.08
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.07
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.07
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.07
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.07
KOG1276|consensus	491		98.07
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.06
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.06
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.05
PLN02507	499	glutathione reductase	98.05
KOG2960|consensus	328		98.04
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.04
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.03
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.03
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.03
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.02
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.02
KOG2415|consensus	621		98.02
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.02
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.01
PLN02487	569	zeta-carotene desaturase	97.99
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.98
PRK14727	479	putative mercuric reductase; Provisional	97.97
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.97
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.97
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.97
PTZ00052	499	thioredoxin reductase; Provisional	97.95
KOG0685|consensus	498		97.94
PLN02529	738	lysine-specific histone demethylase 1	97.93
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.92
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.92
PRK02106	560	choline dehydrogenase; Validated	97.91
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.88
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.88
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.88
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.87
KOG2853|consensus	509		97.86
PLN02546	558	glutathione reductase	97.86
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.85
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.85
KOG1800|consensus	468		97.84
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.84
PLN03000	881	amine oxidase	97.82
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.82
PRK09897	534	hypothetical protein; Provisional	97.81
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.8
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.8
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.79
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.78
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.77
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.76
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.76
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.76
PRK13984	604	putative oxidoreductase; Provisional	97.73
KOG1298|consensus	509		97.72
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.7
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.62
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.62
COG3573	552	Predicted oxidoreductase [General function predict	97.59
KOG4716|consensus	503		97.57
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.57
PLN02976	1713	amine oxidase	97.56
PRK07846	451	mycothione reductase; Reviewed	97.51
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.51
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.5
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.48
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.46
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.38
KOG0399|consensus	2142		97.38
KOG0042|consensus	680		97.35
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.34
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.29
PLN02785	587	Protein HOTHEAD	97.28
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.12
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.08
KOG1238|consensus	623		97.06
KOG1335|consensus	506		96.93
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.93
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	96.91
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.88
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.82
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	96.82
KOG2844|consensus	856		96.81
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.8
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.74
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.74
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.73
KOG4254|consensus	561		96.72
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.7
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	96.64
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	96.64
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	96.64
KOG2404|consensus	477		96.6
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.53
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.51
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	96.48
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	96.47
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.44
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.44
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	96.43
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	96.43
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.43
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.43
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.41
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.37
TIGR02053	463	MerA mercuric reductase. This model represents the	96.37
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	96.37
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	96.35
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	96.35
PRK07846	451	mycothione reductase; Reviewed	96.34
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	96.34
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	96.32
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	96.32
KOG3855|consensus	481		96.31
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	96.29
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.29
KOG2311|consensus	679		96.29
PRK06370	463	mercuric reductase; Validated	96.29
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.29
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	96.28
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	96.27
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.27
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	96.25
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.22
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	96.22
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	96.22
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.21
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.19
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.16
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	96.14
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.14
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	96.13
KOG2755|consensus	334		96.13
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.07
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	96.06
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	96.0
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.99
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.96
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.95
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.91
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.91
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.89
PRK09564	444	coenzyme A disulfide reductase; Reviewed	95.88
PRK06116	450	glutathione reductase; Validated	95.86
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.85
PRK13748	561	putative mercuric reductase; Provisional	95.83
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	95.79
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.77
PLN02507	499	glutathione reductase	95.77
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.73
PRK07845	466	flavoprotein disulfide reductase; Reviewed	95.72
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	95.71
PRK14694	468	putative mercuric reductase; Provisional	95.7
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	95.69
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	95.68
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	95.66
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.65
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.64
PRK14727	479	putative mercuric reductase; Provisional	95.64
PTZ00058	561	glutathione reductase; Provisional	95.62
PRK10262	321	thioredoxin reductase; Provisional	95.58
KOG3851|consensus	446		95.57
KOG0404|consensus	322		95.57
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	95.57
PTZ00052	499	thioredoxin reductase; Provisional	95.54
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	95.53
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	95.51
PTZ00153	659	lipoamide dehydrogenase; Provisional	95.51
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.5
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	95.49
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.48
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.44
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.44
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.43
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	95.43
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.41
PRK14989	847	nitrite reductase subunit NirD; Provisional	95.39
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	95.37
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.36
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.34
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.32
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	95.3
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.29
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.28
PRK12770	352	putative glutamate synthase subunit beta; Provisio	95.28
PRK12831	464	putative oxidoreductase; Provisional	95.28
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	95.24
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.22
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.22
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	95.2
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	95.16
PLN02546	558	glutathione reductase	95.14
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	95.12
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.11
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.09
PRK06223	307	malate dehydrogenase; Reviewed	95.07
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.05
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	95.05
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.04
PRK07417	279	arogenate dehydrogenase; Reviewed	95.04
KOG0405|consensus	478		95.04
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	95.0
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.99
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.98
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	94.97
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.97
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	94.96
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	94.95
PRK08306	296	dipicolinate synthase subunit A; Reviewed	94.95
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	94.94
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.92
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	94.89
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.87
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	94.85
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	94.84
PRK08328	231	hypothetical protein; Provisional	94.82
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.81
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	94.81
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	94.78
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	94.69
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	94.69
PRK11730	715	fadB multifunctional fatty acid oxidation complex	94.65
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	94.64
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.64
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.62
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.58
PRK04148	134	hypothetical protein; Provisional	94.52
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	94.5
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	94.49
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	94.48
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	94.48
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	94.48
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	94.44
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	94.42
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	94.42
PRK05562	223	precorrin-2 dehydrogenase; Provisional	94.39
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	94.38
PRK10669	558	putative cation:proton antiport protein; Provision	94.36
PTZ00117	319	malate dehydrogenase; Provisional	94.32
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	94.29
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	94.28
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	94.25
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	94.24
PRK09496	453	trkA potassium transporter peripheral membrane com	94.23
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.2
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	94.17
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	94.14
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	94.11
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	94.11
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.11
PRK08223	287	hypothetical protein; Validated	94.09
PRK09496	453	trkA potassium transporter peripheral membrane com	94.04
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	94.01
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	93.98
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	93.95
PRK12548	289	shikimate 5-dehydrogenase; Provisional	93.95
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	93.88
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	93.87
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	93.84
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	93.82
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.76
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	93.72
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	93.69
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	93.68
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	93.66
PRK08017	256	oxidoreductase; Provisional	93.65
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	93.63
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	93.63
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.6
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	93.59
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	93.58
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	93.58
PRK00536	262	speE spermidine synthase; Provisional	93.56
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	93.55
PLN02695	370	GDP-D-mannose-3',5'-epimerase	93.51
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	93.46
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	93.42
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	93.41
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	93.35
PRK07411	390	hypothetical protein; Validated	93.31
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	93.3
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	93.29
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	93.24
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	93.22
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	93.21
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	93.2
PRK07060	245	short chain dehydrogenase; Provisional	93.19
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	93.18
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	93.18
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	93.16
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	93.15
PLN02240	352	UDP-glucose 4-epimerase	93.13
PLN02494	477	adenosylhomocysteinase	93.1
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	93.1
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.04
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	93.0

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.04  E-value=6.4e-10  Score=77.16  Aligned_cols=48  Identities=42%  Similarity=0.545  Sum_probs=44.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeecC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPS   78 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~~   78 (90)
                      ||+|||+|++|+++|+.|++  .|.+|+|+|++..+.++|..++|++++.
T Consensus         1 DvvIIGaGi~G~~~A~~La~--~G~~V~l~e~~~~~~~aS~~~~g~~~~~   48 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELAR--RGHSVTLLERGDIGSGASGRSGGLVRPG   48 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHH--TTSEEEEEESSSTTSSGGGSSSEEEECS
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCeEEEEeecccccccccccccccccc
Confidence            79999999999999999999  8999999999976788899999999884

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.04  E-value=1.1e-09  Score=78.76  Aligned_cols=59  Identities=19%  Similarity=0.198  Sum_probs=47.4

Q ss_pred             CCCCCCCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCCCCCCCccCcCeeeecCCC
Q psy1704          21 PKVMGSNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNMDTTSDGAAGLFEPSPN   80 (90)
Q Consensus        21 ~~~~~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~~~~~~s~~~~g~~~~~~~   80 (90)
                      ..+....+||+|||||++|+++|+.|+++ .|. +|+|+|+.....++|..++|++...+.
T Consensus        24 ~~~~~~~~dvvIIGgGi~G~s~A~~L~~~-~g~~~V~vle~~~~~~gas~~~~g~~~~~~~   83 (407)
T TIGR01373        24 SPEPKPTYDVIIVGGGGHGLATAYYLAKE-HGITNVAVLEKGWLGGGNTGRNTTIVRSNYL   83 (407)
T ss_pred             CCCCCccCCEEEECCcHHHHHHHHHHHHh-cCCCeEEEEEcccccCcccccccceeeeccc
Confidence            34445568999999999999999999982 274 899999987667788888898876543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.94  E-value=2.4e-09  Score=75.93  Aligned_cols=49  Identities=33%  Similarity=0.403  Sum_probs=43.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeecC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPS   78 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~~   78 (90)
                      +||+|||+|++|+++|+.|++  .|.+|+|+|+.....++|..++|++.+.
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~--~G~~V~vle~~~~~~gaS~~~~G~~~~~   49 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAAR--RGLSVTVIERSSRAQGASVRNFGQVWPT   49 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCcccccCceEEec
Confidence            489999999999999999999  7999999999876678888898988763

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.89  E-value=4.2e-09  Score=75.85  Aligned_cols=49  Identities=33%  Similarity=0.439  Sum_probs=43.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC-CCCCCccCcCeeeecC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAGLFEPS   78 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~-~~~~~s~~~~g~~~~~   78 (90)
                      .||+|||+|++|+++|+.|++  .|.+|+|+|++. ...++|..++|++.+.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~--~g~~V~vle~~~~~~~~as~~~~g~~~~~   51 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQ--RGYQVTVFDRHRYAAMETSFANGGQLSAS   51 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCCCcCcccccCCEEeec
Confidence            489999999999999999999  799999999986 4567888999999774

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.89  E-value=3.7e-09  Score=77.66  Aligned_cols=52  Identities=27%  Similarity=0.406  Sum_probs=44.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ...||+|||+|++|+++|+.|+++.+|.+|+|+|++....++|..++|++.+
T Consensus        23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~G~~~~   74 (460)
T TIGR03329        23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCMLT   74 (460)
T ss_pred             ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccCccccc
Confidence            3479999999999999999999843489999999987667888889887654

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.88  E-value=5.4e-09  Score=75.17  Aligned_cols=51  Identities=29%  Similarity=0.607  Sum_probs=43.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC-CCCCccCcCeeeecC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN-MDTTSDGAAGLFEPS   78 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~-~~~~s~~~~g~~~~~   78 (90)
                      .||+|||||++|+++|+.|+++.+|.+|+|+|+... ...+|..++|++++.
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~   54 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAG   54 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccc
Confidence            699999999999999999999434999999999853 456788888988774

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.85  E-value=7.2e-09  Score=77.89  Aligned_cols=51  Identities=16%  Similarity=0.227  Sum_probs=46.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeecCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSP   79 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~~~   79 (90)
                      .+||+|||||+.|+++|+.|++  .|.+|+|+|+.....++|..++|+++...
T Consensus         6 ~~DVvIIGGGi~G~~iA~~La~--rG~~V~LlEk~d~~~GaS~~~~gllh~g~   56 (546)
T PRK11101          6 ETDVIIIGGGATGAGIARDCAL--RGLRCILVERHDIATGATGRNHGLLHSGA   56 (546)
T ss_pred             cccEEEECcCHHHHHHHHHHHH--cCCeEEEEECCCCCCCcccccccceeccc
Confidence            4799999999999999999999  89999999998777788999999998743

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.84  E-value=6.5e-09  Score=73.75  Aligned_cols=50  Identities=32%  Similarity=0.383  Sum_probs=40.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      +..||+|||+|++|+++|+.|++  .|.+|+++|+...+.+++..+++.+..
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~--~G~~V~vie~~~~~~g~s~~~~~~~~~   52 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAE--RGADVTVLEAGEAGGGAAGRNAGGILA   52 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHH--cCCEEEEEecCccCCcchhcchhhhcc
Confidence            45799999999999999999999  889999999987665455445444444

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.83  E-value=1.3e-08  Score=77.90  Aligned_cols=50  Identities=30%  Similarity=0.393  Sum_probs=44.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC-CCCCCccCcCeeeecCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAGLFEPSP   79 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~-~~~~~s~~~~g~~~~~~   79 (90)
                      .||+|||+|++|+++|+.|++  .|.+|+|+|+.. ...++|..++|++++..
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~--~G~~V~VlE~~~~~~~gaSg~~~G~l~~~~  311 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALAR--RGWQVTLYEADEAPAQGASGNRQGALYPLL  311 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHH--CCCeEEEEecCCCccccCCcCccccccccc
Confidence            599999999999999999999  899999999975 44678899999998854

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.82  E-value=5.9e-09  Score=77.50  Aligned_cols=51  Identities=18%  Similarity=0.165  Sum_probs=45.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ...+||+|||||+.|+.+|+.|++  .|.+|+|+|+.....++|..++++++.
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~--rG~~V~LlEk~d~~~GtS~~ss~lihg   54 (502)
T PRK13369          4 PETYDLFVIGGGINGAGIARDAAG--RGLKVLLCEKDDLAQGTSSRSGKLVHG   54 (502)
T ss_pred             CcccCEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCCCCchhhhhhHHH
Confidence            345799999999999999999999  899999999997777888888887765

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.81  E-value=9.1e-10  Score=75.11  Aligned_cols=48  Identities=29%  Similarity=0.430  Sum_probs=39.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE   76 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~   76 (90)
                      ..||+|||+|++||++|++|++  .+.+|+|+|++..+++..|..+=+++
T Consensus        30 esDViIVGaGPsGLtAAyyLAk--~g~kV~i~E~~ls~GGG~w~GGmlf~   77 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAK--AGLKVAIFERKLSFGGGIWGGGMLFN   77 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHh--CCceEEEEEeecccCCcccccccccc
Confidence            3599999999999999999999  89999999998777766564443333

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.79  E-value=8.9e-09  Score=74.05  Aligned_cols=49  Identities=35%  Similarity=0.493  Sum_probs=43.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC-CCCCccCcCeeeecCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN-MDTTSDGAAGLFEPSP   79 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~-~~~~s~~~~g~~~~~~   79 (90)
                      ||+|||||++|+++|+.|++  .|.+|+|+|+... ..++|..++|++++.+
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~--~g~~V~vle~~~~~~~~aS~~n~g~i~~~~   51 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQ--AGHEVTVIDRQPGPALETSFANAGQISPGY   51 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCCchhhhheeccCccccccc
Confidence            79999999999999999999  8999999999853 4678889999988854

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.77  E-value=1.7e-08  Score=75.29  Aligned_cols=50  Identities=18%  Similarity=0.214  Sum_probs=42.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ..+||+|||||+.|+.+|+.|++  .|++|+|+|++....++|..+.++++.
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~--rGl~V~LvEk~d~~~GtS~~ss~lihg   54 (508)
T PRK12266          5 ETYDLLVIGGGINGAGIARDAAG--RGLSVLLCEQDDLASATSSASTKLIHG   54 (508)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCccccccccccc
Confidence            45799999999999999999999  899999999987766777666666655

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.74  E-value=3.2e-08  Score=70.20  Aligned_cols=49  Identities=18%  Similarity=0.263  Sum_probs=39.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC--CCccCcCeeeec
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD--TTSDGAAGLFEP   77 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~--~~s~~~~g~~~~   77 (90)
                      ..||+|||||++|+++|+.|++  .|.+|+|+|++....  +++....+++..
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~--~g~~V~lie~~~~~~~~~ss~~~~~~~~~   53 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLAR--RGLRVLGLDRFMPPHQQGSSHGDTRIIRH   53 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHH--CCCeEEEEecccCCCCCcCcCCcceEEEe
Confidence            4699999999999999999999  799999999976442  344455555554

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.73  E-value=2.7e-08  Score=71.92  Aligned_cols=49  Identities=29%  Similarity=0.338  Sum_probs=38.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      +.+||+|||+|++|+++|+.|++  .|.+|+|+|+...++..... ++.+.+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~--~G~~VlvlEk~~~~G~k~~~-~~~~~~   50 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAK--AGLDVLVLEKGSEPGAKPCC-GGGLSP   50 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHH--cCCeEEEEecCCCCCCCccc-cceech
Confidence            45799999999999999999999  89999999998766543222 344444

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.73  E-value=2.2e-08  Score=56.34  Aligned_cols=32  Identities=38%  Similarity=0.556  Sum_probs=28.3

Q ss_pred             EECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          32 ILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        32 IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      |||+|++||.+|+.|++  .+.+|+|+|+...++
T Consensus         1 IiGaG~sGl~aA~~L~~--~g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAK--AGYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHH--TTSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHH--CCCcEEEEecCcccC
Confidence            89999999999999999  799999999986654

...

>PLN02661 Putative thiazole synthesis

Probab=98.71  E-value=1.8e-08  Score=72.63  Aligned_cols=64  Identities=27%  Similarity=0.278  Sum_probs=43.2

Q ss_pred             hcccccccccCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCc
Q psy1704           7 EFGVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGA   71 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~   71 (90)
                      |.-+..++.+.++.........||+|||+|++|+.+|+.|++. ++.+|+|+|+...+++..+..
T Consensus        72 e~~is~~i~~~~~~~l~~~~~~DVlIVGaG~AGl~AA~~La~~-~g~kV~viEk~~~~GGG~~~g  135 (357)
T PLN02661         72 ESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKN-PNVKVAIIEQSVSPGGGAWLG  135 (357)
T ss_pred             hhHhhccchHhHhhhhhhcccCCEEEECCHHHHHHHHHHHHHc-CCCeEEEEecCcccccceeeC
Confidence            3333334333333322333457999999999999999999862 489999999986655544433

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.69  E-value=5.9e-08  Score=68.88  Aligned_cols=48  Identities=21%  Similarity=0.300  Sum_probs=38.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC--CCCccCcCeeeec
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM--DTTSDGAAGLFEP   77 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~--~~~s~~~~g~~~~   77 (90)
                      +||+|||||++|+++|+.|++  .|.+|+|+|+...+  ..++...++++..
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~--~g~~V~l~e~~~~~~~~~ss~~~~~~~~~   50 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAK--HGKKTLLLEQFDLPHSRGSSHGQSRIIRK   50 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCCCCCCCCCCeeeee
Confidence            489999999999999999999  79999999997543  2344555566554

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.68  E-value=5.5e-08  Score=71.10  Aligned_cols=37  Identities=32%  Similarity=0.398  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      .+||+|||+|++|+++|+.|++  .|++|+|+|+...++
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~--~G~~V~llEr~~~~g   41 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLAR--EGAQVLVIERGNSAG   41 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHh--CCCeEEEEEcCCCCC
Confidence            4799999999999999999999  899999999986654

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.68  E-value=2.2e-08  Score=68.09  Aligned_cols=42  Identities=33%  Similarity=0.363  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCcc
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSD   69 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~   69 (90)
                      ...|++|||+|++||.+|+.|++  .|++|+++|++..+++..|
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~--~g~kV~v~E~~~~~GGg~~   57 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAK--AGLKVAVIERKLSPGGGMW   57 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHH--HTS-EEEEESSSS-BTTTT
T ss_pred             ccCCEEEECCChhHHHHHHHHHH--CCCeEEEEecCCCCCcccc
Confidence            34699999999999999999999  7999999999866655434

>PRK10015 oxidoreductase; Provisional

Probab=98.67  E-value=6.9e-08  Score=70.72  Aligned_cols=38  Identities=29%  Similarity=0.409  Sum_probs=34.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      .+||+|||+|++|+++|+.|++  .|.+|+|+|+...++.
T Consensus         5 ~~DViIVGgGpAG~~aA~~LA~--~G~~VlliEr~~~~g~   42 (429)
T PRK10015          5 KFDAIVVGAGVAGSVAALVMAR--AGLDVLVIERGDSAGC   42 (429)
T ss_pred             ccCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCCc
Confidence            4799999999999999999999  8999999999866543

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.67  E-value=3.7e-08  Score=74.01  Aligned_cols=51  Identities=25%  Similarity=0.362  Sum_probs=41.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ....||+|||+|.+|+++|+.+++  .|.+|+|+||....+++|..++|.+..
T Consensus        14 ~~~~DVlVIG~G~AGl~AAi~aae--~G~~VilleK~~~~~g~s~~a~Ggi~a   64 (541)
T PRK07804         14 RDAADVVVVGSGVAGLTAALAARR--AGRRVLVVTKAALDDGSTRWAQGGIAA   64 (541)
T ss_pred             ccccCEEEECccHHHHHHHHHHHH--cCCeEEEEEccCCCCCchhhhccceee
Confidence            345799999999999999999999  899999999987665556655554443

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.66  E-value=5.5e-08  Score=70.14  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..||+|||||++|+++|+.|++  .|++|+|+|+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHH--CCCCEEEEECCCC
Confidence            3689999999999999999999  8999999999864

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.66  E-value=7.2e-08  Score=66.57  Aligned_cols=42  Identities=29%  Similarity=0.370  Sum_probs=36.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCcc
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSD   69 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~   69 (90)
                      ...|++|||+|++|+++|+.|++  .+.+|+|+|++...++..+
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~--~G~~V~vlEk~~~~Ggg~~   61 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAK--NGLKVCVLERSLAFGGGSW   61 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCcccc
Confidence            35799999999999999999999  8999999999876554433

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.66  E-value=7.5e-08  Score=66.73  Aligned_cols=36  Identities=44%  Similarity=0.600  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      .||+|||||++|+++|+.|++  .|.+|+|||+...+.
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~--~G~~v~i~E~~~~~~   37 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALAR--AGIDVTIIERRPDPR   37 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHH--TTCEEEEEESSSSCC
T ss_pred             ceEEEECCCHHHHHHHHHHHh--cccccccchhccccc
Confidence            589999999999999999999  899999999986543

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.65  E-value=8.1e-08  Score=70.77  Aligned_cols=54  Identities=26%  Similarity=0.461  Sum_probs=44.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC-CCCccCcCeeeecCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM-DTTSDGAAGLFEPSP   79 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~-~~~s~~~~g~~~~~~   79 (90)
                      +..|++|||||+.|+++|+.|++..++++|+|+||.... ...|..++|+++...
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~   56 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGL   56 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccc
Confidence            347999999999999999999996666999999997654 456668888888753

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.65  E-value=4.8e-08  Score=72.62  Aligned_cols=38  Identities=32%  Similarity=0.438  Sum_probs=34.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      .+|++|||+|+.||++|..|++  .|++|+|+||+..+++
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~--~G~~V~VlE~~~~~GG   40 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLAR--AGLKVTVLEKNDRVGG   40 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHh--CCCEEEEEEecCCCCc
Confidence            4699999999999999999999  9999999999876654

>PRK09126 hypothetical protein; Provisional

Probab=98.64  E-value=7e-08  Score=68.93  Aligned_cols=36  Identities=31%  Similarity=0.379  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ..||+|||||++|+++|+.|++  .|++|+|+|+...+
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~   38 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAG--SGLKVTLIERQPLA   38 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCcc
Confidence            5799999999999999999999  89999999997643

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.64  E-value=9e-08  Score=68.84  Aligned_cols=37  Identities=30%  Similarity=0.451  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...||+|||||++|+++|..|++  .|++|+|+|+.+.+
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~   53 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKD--SGLRIALIEAQPAE   53 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhc--CCCEEEEEecCCcc
Confidence            35799999999999999999999  89999999998543

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.63  E-value=7.3e-08  Score=70.20  Aligned_cols=47  Identities=28%  Similarity=0.427  Sum_probs=39.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCCCCCCCccCcCeeeec
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ||+|||+|.+|+++|+.+++  .| .+|+|+||....++++..++|.+..
T Consensus         1 DVvVVG~G~AGl~AA~~aa~--~G~~~V~vlEk~~~~gg~s~~s~g~~~~   48 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKK--AGAANVVLLEKMPVIGGNSAIAAGGMNA   48 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHH--cCCccEEEEecCCCCCCcccccCceeec
Confidence            79999999999999999999  89 9999999987666666665555543

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.63  E-value=7.9e-08  Score=69.12  Aligned_cols=35  Identities=31%  Similarity=0.401  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..||+|||+|++|+++|+.|++  .|.+|+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~--~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHL--AGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHh--cCCCEEEEEcCCc
Confidence            4689999999999999999999  8999999999864

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.63  E-value=5.4e-08  Score=73.88  Aligned_cols=49  Identities=20%  Similarity=0.256  Sum_probs=40.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ..||+|||+|.+|+++|+.+++  .|.+|+|+||....++++..++|.++.
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lieK~~~~~g~s~~a~Ggi~a   51 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAE--AGVHVDLFSLVPVKRSHSVCAQGGING   51 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHH--cCCcEEEEEccCCCCCcccccCCCeEE
Confidence            3599999999999999999999  899999999987666666666555543

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.62  E-value=6.5e-08  Score=73.99  Aligned_cols=50  Identities=20%  Similarity=0.238  Sum_probs=42.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ..+||+|||||+.|..+|+.|++  .|++|+|+|++....++|..+.++++.
T Consensus        70 ~~~DVvVIGGGi~Ga~~A~~lA~--rGl~V~LvE~~d~a~GtSsrss~lihg  119 (627)
T PLN02464         70 EPLDVLVVGGGATGAGVALDAAT--RGLRVGLVEREDFSSGTSSRSTKLIHG  119 (627)
T ss_pred             CccCEEEECCCHHHHHHHHHHHh--CCCEEEEEeccccCCCcccchhhhhhh
Confidence            34799999999999999999999  899999999987776777777665544

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.62  E-value=1.1e-07  Score=69.87  Aligned_cols=47  Identities=21%  Similarity=0.256  Sum_probs=38.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC--CCCCccCcCee
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN--MDTTSDGAAGL   74 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~--~~~~s~~~~g~   74 (90)
                      ...||+|||+|++|+++|+.+++  .|.+|+|+||...  .++.+..++|+
T Consensus         3 ~~~DVvVVG~G~aGl~AA~~aa~--~G~~V~vlEk~~~~~~GG~s~~s~G~   51 (466)
T PRK08274          3 SMVDVLVIGGGNAALCAALAARE--AGASVLLLEAAPREWRGGNSRHTRNL   51 (466)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcCCCcccccCCce
Confidence            45799999999999999999999  8999999999863  34555555563

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.62  E-value=1e-07  Score=65.83  Aligned_cols=39  Identities=33%  Similarity=0.458  Sum_probs=34.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ...||+|||+|++|+.+|+.|++  .|.+|+|+|+...+++
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~--~G~~V~liEk~~~~Gg   62 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAK--AGLKVAVFERKLSFGG   62 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHh--CCCeEEEEecCCCCCC
Confidence            45799999999999999999999  8999999999865543

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.61  E-value=6.2e-08  Score=69.86  Aligned_cols=47  Identities=23%  Similarity=0.460  Sum_probs=36.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ||+|||+|.+|+++|+.+++  .|.+|+|+||....++++..++|.+..
T Consensus         1 DVvVIG~G~AGl~AA~~Aae--~G~~V~lvek~~~~gg~~~~s~g~~~~   47 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAE--AGAKVLLVEKGPRLGGSSAFSSGGFDA   47 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHH--TTT-EEEEESSSGGGSGGGGTCSEEEE
T ss_pred             CEEEECCCHHHHHHHHHHhh--hcCeEEEEEeecccccccccccCceee
Confidence            79999999999999999999  899999999987655555555555444

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK07121 hypothetical protein; Validated

Probab=98.61  E-value=1.2e-07  Score=70.35  Aligned_cols=49  Identities=18%  Similarity=0.289  Sum_probs=41.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE   76 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~   76 (90)
                      ..+||+|||+|.+|+++|+.+++  .|.+|+|+||....++++..++|.+.
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae--~G~~VillEK~~~~gG~s~~sgG~~~   67 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAA--AGARVLVLERAAGAGGATALSGGVIY   67 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCcccccCeEEE
Confidence            45799999999999999999999  89999999998766666666666653

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.61  E-value=1.6e-07  Score=70.11  Aligned_cols=46  Identities=20%  Similarity=0.286  Sum_probs=38.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCe
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG   73 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g   73 (90)
                      ...||+|||+|.+|+++|+.+++  .|.+|+|+||....++.+...+|
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~--~Ga~VivlEK~~~~GG~s~~s~G  105 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKD--AGMNPVILEKMPVAGGNTMKASS  105 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCcccccCC
Confidence            45799999999999999999999  89999999998766554443333

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.60  E-value=9.4e-08  Score=68.28  Aligned_cols=37  Identities=27%  Similarity=0.514  Sum_probs=33.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      +...||+|||+|++|+++|+.|++  .|.+|+|+|+.+.
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~--~G~~v~liE~~~~   41 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALAR--AGASVALVAPEPP   41 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhc--CCCeEEEEeCCCC
Confidence            345699999999999999999999  8999999999754

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.60  E-value=8.8e-08  Score=68.65  Aligned_cols=38  Identities=24%  Similarity=0.427  Sum_probs=33.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ....||+|||||++|+++|+.|++  .|.+|+|+|+.+.+
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~--~G~~v~liE~~~~~   41 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALAD--AGLSVALVEGREPP   41 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhc--CCCEEEEEeCCCCc
Confidence            345799999999999999999999  89999999997543

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.59  E-value=9.6e-08  Score=68.31  Aligned_cols=37  Identities=32%  Similarity=0.494  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      +..+|+|||+|++|+++|..|++  .|.+|+|+|+.+.+
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~--~g~~v~v~Er~~~~   39 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALAR--QGIKVKLLEQAAEI   39 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHh--CCCcEEEEeeCccc
Confidence            34699999999999999999999  89999999997543

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.59  E-value=1e-07  Score=64.97  Aligned_cols=35  Identities=29%  Similarity=0.320  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      +||+|||+|++|+++|+.|++  .|.+|+|+|+...+
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~--~g~~v~vie~~~~~   35 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLAD--KGLRVLLLEKKSFP   35 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCC
Confidence            489999999999999999999  89999999998654

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK07208 hypothetical protein; Provisional

Probab=98.59  E-value=1.1e-07  Score=69.82  Aligned_cols=39  Identities=33%  Similarity=0.462  Sum_probs=34.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ...+|+|||||++||++|+.|.+  .|.+|+|+|+....++
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~--~g~~v~v~E~~~~~GG   41 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLK--RGYPVTVLEADPVVGG   41 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCc
Confidence            45689999999999999999999  7999999999765443

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.58  E-value=1.6e-07  Score=69.43  Aligned_cols=39  Identities=28%  Similarity=0.468  Sum_probs=34.4

Q ss_pred             CCCCCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          22 KVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        22 ~~~~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ++..+.+||+|||||++|+++|+.|++  .|++|+|+|+..
T Consensus        34 ~~~~~~~DViIVGaGPAG~~aA~~LA~--~G~~VlllEr~~   72 (450)
T PLN00093         34 KLSGRKLRVAVIGGGPAGACAAETLAK--GGIETFLIERKL   72 (450)
T ss_pred             CcCCCCCeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCC
Confidence            344566899999999999999999999  899999999974

>TIGR00551 nadB L-aspartate oxidase

Probab=98.58  E-value=8e-08  Score=71.28  Aligned_cols=48  Identities=29%  Similarity=0.339  Sum_probs=38.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ..||+|||+|.+|+.+|+.+++  .|. |+|+||....++++..++|.+..
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~--~G~-V~lleK~~~~~g~s~~a~Ggi~~   49 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALAD--QGR-VIVLSKAPVTEGNSFYAQGGIAA   49 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHh--CCC-EEEEEccCCCCCcchhcCcCeee
Confidence            3699999999999999999998  787 99999986655566555554443

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK07045 putative monooxygenase; Reviewed

Probab=98.58  E-value=1e-07  Score=68.18  Aligned_cols=37  Identities=30%  Similarity=0.305  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...||+|||||++|+++|+.|++  .|++|+|+|+.+.+
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~--~G~~v~v~E~~~~~   40 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGA--RGHSVTVVERAARN   40 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHh--cCCcEEEEeCCCcc
Confidence            34699999999999999999999  89999999998654

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.57  E-value=1.1e-07  Score=71.03  Aligned_cols=38  Identities=21%  Similarity=0.333  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ...||+|||||++|+++|+.|.+..++.+|+|+||...
T Consensus         4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~   41 (494)
T PRK05257          4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG   41 (494)
T ss_pred             ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence            34699999999999999999998656889999999754

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.57  E-value=1e-07  Score=70.92  Aligned_cols=50  Identities=26%  Similarity=0.373  Sum_probs=37.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC-CCCcc--CcCeeeec
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM-DTTSD--GAAGLFEP   77 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~-~~~s~--~~~g~~~~   77 (90)
                      .||+|||||++|+++|+.|++..++.+|+|+|+...+ ..+|.  .++|..+.
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~~~~naG~~ha   53 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSNPWNNAGTGHS   53 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCCCCCccccccc
Confidence            4899999999999999999996569999999996533 23333  45554444

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.56  E-value=1.7e-07  Score=69.48  Aligned_cols=36  Identities=36%  Similarity=0.540  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..++|+|||||++||++|..|.+  .|.+|+|+|++..
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~--~G~~v~vfE~~~~   44 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRR--EGHTVVVFEREKQ   44 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHh--cCCeEEEEecCCC
Confidence            45799999999999999999999  8999999999743

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.55  E-value=1.7e-07  Score=71.69  Aligned_cols=49  Identities=24%  Similarity=0.298  Sum_probs=39.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE   76 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~   76 (90)
                      ...||+|||+|.+|+++|+.+++  .|.+|+|+||....++.|..++|.+.
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae--~G~~V~lieK~~~~~g~s~~a~Ggi~   55 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARE--RGLRVAVVCKSLFGKAHTVMAEGGCA   55 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHH--CCCCEEEEeccCCCCCcceecCccce
Confidence            45799999999999999999999  89999999998665555555555443

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.55  E-value=1.3e-07  Score=68.47  Aligned_cols=35  Identities=40%  Similarity=0.674  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCC--CcEEEEccCCCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPN--CDVTVIADKFNMD   65 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g--~~v~vie~~~~~~   65 (90)
                      +|+|||||++||++|+.|++  .|  .+|+|+|++...+
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~--~G~~~~V~vlEa~~~~G   38 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHK--KGPDADITLLEASDRLG   38 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHH--hCCCCCEEEEEcCCCCc
Confidence            69999999999999999999  66  8999999976543

>PRK07236 hypothetical protein; Provisional

Probab=98.55  E-value=1.7e-07  Score=67.24  Aligned_cols=36  Identities=31%  Similarity=0.436  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      +..+|+|||||++|+++|+.|++  .|++|+|+|+.+.
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~   40 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRR--AGWDVDVFERSPT   40 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCC
Confidence            34799999999999999999999  8999999999753

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.54  E-value=1.5e-07  Score=67.13  Aligned_cols=36  Identities=28%  Similarity=0.497  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ..||+|||||++|+++|+.|.+  .|.+|+|+|+...+
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~   40 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQ--SGLRVALLAPRAPP   40 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCc
Confidence            4699999999999999999999  89999999997554

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.54  E-value=1.8e-07  Score=71.40  Aligned_cols=50  Identities=24%  Similarity=0.320  Sum_probs=40.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ...||+|||+|.+|+++|+.+++  .|.+|+|+||....++.+..++|.+..
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~lveK~~~~~g~t~~a~Ggi~a   77 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVE--LGYKTACISKLFPTRSHTVAAQGGINA   77 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHH--cCCcEEEEeccCCCCCCchhhcCCeeE
Confidence            45799999999999999999999  899999999987655555555555443

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.54  E-value=1.2e-07  Score=67.12  Aligned_cols=34  Identities=29%  Similarity=0.560  Sum_probs=31.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ||+|||+|++|+++|+.|++  .|.+|+|+|+...+
T Consensus         1 dViIvGaG~aGl~~A~~L~~--~G~~v~v~Er~~~~   34 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALAR--SGLKIALIEATPAE   34 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhc--CCCEEEEEeCCCcc
Confidence            69999999999999999999  89999999998654

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07233 hypothetical protein; Provisional

Probab=98.54  E-value=1.5e-07  Score=67.62  Aligned_cols=36  Identities=36%  Similarity=0.578  Sum_probs=32.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      +|+|||+|++||++|+.|++  .|.+|+|+|+...+++
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~--~G~~v~vlE~~~~~GG   36 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAK--RGHEVTVFEADDQLGG   36 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCcEEEEEeCCCCCC
Confidence            58999999999999999999  8999999999876644

>PRK08013 oxidoreductase; Provisional

Probab=98.54  E-value=1.5e-07  Score=67.94  Aligned_cols=35  Identities=31%  Similarity=0.520  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..||+|||+|++|+++|+.|++  .|++|+|+|+.+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~--~G~~v~viE~~~~   37 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQG--SGLRVAVLEQRVP   37 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhh--CCCEEEEEeCCCC
Confidence            4699999999999999999999  8999999999754

>PRK06185 hypothetical protein; Provisional

Probab=98.54  E-value=1.6e-07  Score=67.53  Aligned_cols=36  Identities=31%  Similarity=0.440  Sum_probs=32.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+||+|||||++|+++|+.|++  .|.+|+|+|+.+
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~--~G~~v~liE~~~   39 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLAR--AGVDVTVLEKHA   39 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCC
Confidence            355799999999999999999999  899999999974

>PLN02576 protoporphyrinogen oxidase

Probab=98.54  E-value=2.4e-07  Score=68.27  Aligned_cols=39  Identities=31%  Similarity=0.491  Sum_probs=34.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCC-CCcEEEEccCCCCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADKFNMD   65 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~-g~~v~vie~~~~~~   65 (90)
                      ....+|+|||||++||++|+.|.+  . |.+|+|+|++...+
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~--~~g~~v~vlEa~~rvG   49 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALAS--KHGVNVLVTEARDRVG   49 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHH--hcCCCEEEEecCCCCC
Confidence            344689999999999999999999  7 89999999986554

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.53  E-value=1.9e-07  Score=70.89  Aligned_cols=50  Identities=28%  Similarity=0.425  Sum_probs=40.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE   76 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~   76 (90)
                      ....||+|||+|.+|+++|+.+++  .|.+|+|+||....++.+..++|.+.
T Consensus        10 ~~~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~vleK~~~~~g~t~~a~Ggi~   59 (591)
T PRK07057         10 RRKFDVVIVGAGGSGMRASLQLAR--AGLSVAVLSKVFPTRSHTVAAQGGIG   59 (591)
T ss_pred             cccCCEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCCCCchhccCCcc
Confidence            445799999999999999999998  89999999998655555555555443

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.53  E-value=1.5e-07  Score=70.71  Aligned_cols=49  Identities=29%  Similarity=0.305  Sum_probs=39.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ...||+|||+|.+|+++|+.+++  . .+|+|+||....+++|..++|.+..
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~--~-~~VilveK~~~~~g~t~~a~Ggi~~   55 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAE--H-RRVAVLSKGPLSEGSTFYAQGGIAA   55 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHH--C-CCEEEEeccCCCCCChhhccCCeee
Confidence            45799999999999999999988  5 7999999987655555555554433

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.53  E-value=1.2e-07  Score=71.50  Aligned_cols=49  Identities=31%  Similarity=0.350  Sum_probs=38.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE   76 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~   76 (90)
                      ....||+|||+|.+|+++|+.+.   .|.+|+|+||....++.+..++|.+.
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~---~G~~V~lieK~~~~gg~s~~a~Ggi~   55 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLP---SHLRVGLITKDTLKTSASDWAQGGIA   55 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhh---cCCCEEEEEccCCCCCchhhhcccce
Confidence            34579999999999999999985   48899999998766655655555443

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.53  E-value=1.6e-07  Score=70.99  Aligned_cols=49  Identities=27%  Similarity=0.426  Sum_probs=40.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE   76 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~   76 (90)
                      ...||+|||+|.+|+++|+.+++  .|.+|+|+||....++.+..++|.+.
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae--~G~~V~lveK~~~~~g~s~~a~Ggi~   52 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIAS--AGFKVAVISKVFPTRSHSAAAEGGIA   52 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHH--CCCcEEEEEccCCCCCcchhhccchh
Confidence            45799999999999999999998  89999999998655555555555544

>PRK06184 hypothetical protein; Provisional

Probab=98.53  E-value=2.1e-07  Score=69.06  Aligned_cols=36  Identities=33%  Similarity=0.461  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ..+|+|||+|++|+++|+.|++  .|.+|+|+|+.+.+
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~--~Gi~v~viE~~~~~   38 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELAR--RGVSFRLIEKAPEP   38 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCC
Confidence            4699999999999999999999  89999999997543

>PRK08244 hypothetical protein; Provisional

Probab=98.53  E-value=2e-07  Score=68.97  Aligned_cols=36  Identities=31%  Similarity=0.367  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ..||+|||+|++|+++|..|++  .|.+|+|+|+.+.+
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~--~G~~v~viEr~~~~   37 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELAL--AGVKTCVIERLKET   37 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCC
Confidence            3689999999999999999999  89999999997543

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.52  E-value=1.8e-07  Score=67.15  Aligned_cols=33  Identities=30%  Similarity=0.527  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .||+|||||++|+++|+.|++  .|++|+|+|+.+
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~--~G~~v~l~E~~~   36 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAK--QGRSVAVIEGGE   36 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHh--CCCcEEEEcCCC
Confidence            699999999999999999999  899999999864

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.52  E-value=1.9e-07  Score=70.64  Aligned_cols=48  Identities=27%  Similarity=0.361  Sum_probs=39.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCC---CcEEEEccCCCCCCCccCcCeee
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPN---CDVTVIADKFNMDTTSDGAAGLF   75 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g---~~v~vie~~~~~~~~s~~~~g~~   75 (90)
                      ...||+|||+|.+|+++|+.+++  .|   .+|+|+||....++.+..++|.+
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~--~G~~~~~V~lleK~~~~~~~s~~a~Gg~   54 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAE--RSGGKLSVAVVSKTQPMRSHSVSAEGGT   54 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHH--hCCCCCcEEEEEcccCCCCCceeccccc
Confidence            45799999999999999999998  66   89999999876665555555444

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.52  E-value=1.5e-07  Score=67.66  Aligned_cols=34  Identities=29%  Similarity=0.468  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..||+|||||++|+++|+.|.+  .|.+|+|+|+.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQG--SGLEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence            3689999999999999999999  899999999975

>PRK06847 hypothetical protein; Provisional

Probab=98.51  E-value=2.3e-07  Score=65.86  Aligned_cols=35  Identities=37%  Similarity=0.506  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+|+|||+|++|+++|+.|++  .|.+|+|+|+...
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~--~g~~v~v~E~~~~   38 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRR--AGIAVDLVEIDPE   38 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCC
Confidence            4589999999999999999999  8999999999754

>PRK06126 hypothetical protein; Provisional

Probab=98.51  E-value=3.3e-07  Score=68.50  Aligned_cols=36  Identities=36%  Similarity=0.537  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ...+|+|||||++|+++|+.|++  .|.+|+|+|+...
T Consensus         6 ~~~~VlIVGaGpaGL~~Al~La~--~G~~v~viEr~~~   41 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALDLGR--RGVDSILVERKDG   41 (545)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCC
Confidence            45799999999999999999999  8999999998753

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.51  E-value=1.2e-07  Score=71.86  Aligned_cols=51  Identities=27%  Similarity=0.417  Sum_probs=40.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ..||+|||+|.+|+++|+.+++..++.+|+|+||....++.+..++|.++.
T Consensus         4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~   54 (582)
T PRK09231          4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAA   54 (582)
T ss_pred             eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhh
Confidence            469999999999999999998732357999999987666666666565543

>PLN02268 probable polyamine oxidase

Probab=98.51  E-value=1.9e-07  Score=67.79  Aligned_cols=37  Identities=24%  Similarity=0.474  Sum_probs=32.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      .+|+|||+|++||++|+.|.+  .|.+|+|+|++...++
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~--~g~~v~vlEa~~r~GG   37 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHD--ASFKVTLLESRDRIGG   37 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCc
Confidence            379999999999999999999  8999999999765543

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.51  E-value=2.2e-07  Score=68.62  Aligned_cols=37  Identities=30%  Similarity=0.463  Sum_probs=33.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      .|++|||+|++||++|..|++  .|.+|+|+|++..+++
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~--~G~~v~vlE~~~~~GG   38 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAK--RGYRVTLLEQHAQPGG   38 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCC
Confidence            589999999999999999999  8999999999876644

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.51  E-value=2.6e-07  Score=66.57  Aligned_cols=33  Identities=45%  Similarity=0.599  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..||+|||||++|+++|..|++  .|++|+|+|+.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~--~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALAR--AGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEccC
Confidence            3589999999999999999999  89999999997

>PLN02815 L-aspartate oxidase

Probab=98.51  E-value=1.3e-07  Score=71.97  Aligned_cols=49  Identities=24%  Similarity=0.377  Sum_probs=39.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ...||+|||+|.+||++|+.+++  .| +|+|+||....++++..++|.+..
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae--~G-~VvlleK~~~~gg~s~~a~Ggi~a   76 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAE--YG-TVAIITKDEPHESNTNYAQGGVSA   76 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhh--CC-CEEEEECCCCCCCcHHHhhccccc
Confidence            45799999999999999999998  78 899999987666666656554443

>PRK06753 hypothetical protein; Provisional

Probab=98.50  E-value=2e-07  Score=66.19  Aligned_cols=34  Identities=41%  Similarity=0.571  Sum_probs=31.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      +|+|||||++|+++|+.|++  .|++|+|+|+.+.+
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~--~g~~v~v~E~~~~~   35 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQE--QGHEVKVFEKNESV   35 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCcc
Confidence            79999999999999999999  89999999998654

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.50  E-value=2.6e-07  Score=66.41  Aligned_cols=32  Identities=25%  Similarity=0.422  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +||+|||||++|+++|+.|++  .|.+|+|+|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~--~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLAR--AGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCcEEEEECC
Confidence            489999999999999999999  89999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.50  E-value=1.4e-07  Score=71.58  Aligned_cols=51  Identities=29%  Similarity=0.476  Sum_probs=40.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ..||+|||+|.+|+.+|+.+++..++.+|+|+||....+..+..++|.++.
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~   53 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAA   53 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhh
Confidence            469999999999999999998732368999999987666666666565543

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.49  E-value=3e-07  Score=69.18  Aligned_cols=46  Identities=26%  Similarity=0.377  Sum_probs=37.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC--CCCCCccCcCe
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF--NMDTTSDGAAG   73 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~--~~~~~s~~~~g   73 (90)
                      ...||+|||+|.+||++|+.+++  .|.+|+|+||..  ..++.+..++|
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~--~G~~VivlEK~~~~~~GG~s~~s~G   50 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELAD--AGKRVLLLDQENEANLGGQAFWSLG   50 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCCCceeccCC
Confidence            45799999999999999999999  899999999987  34454444444

>PRK06370 mercuric reductase; Validated

Probab=98.49  E-value=3.1e-07  Score=67.54  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+|++|||+|++|+.+|..+++  .|.+|+|+|+...
T Consensus         4 ~~~DvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~~~   39 (463)
T PRK06370          4 QRYDAIVIGAGQAGPPLAARAAG--LGMKVALIERGLL   39 (463)
T ss_pred             ccccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCcc
Confidence            45899999999999999999999  8999999998643

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.49  E-value=1.7e-07  Score=70.05  Aligned_cols=48  Identities=31%  Similarity=0.428  Sum_probs=38.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ..||+|||+|.+|+++|+.+++   +.+|+|+||....++.|..++|.+..
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~---g~~V~lveK~~~~~g~s~~a~Ggi~~   50 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH---EYNVIIITKKTKRNSNSHLAQGGIAA   50 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc---CCCEEEEeccCCCCCCchhcCcccee
Confidence            4699999999999999999865   78999999987666666555554443

>KOG1399|consensus

Probab=98.49  E-value=3.8e-07  Score=67.59  Aligned_cols=44  Identities=36%  Similarity=0.568  Sum_probs=38.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeecC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPS   78 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~~   78 (90)
                      +..+++|||||++||++|..|.+  .|.+++++|+.       ...||+|...
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~--~g~~v~vfEr~-------~~iGGlW~y~   48 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLR--EGHEVVVFERT-------DDIGGLWKYT   48 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHH--CCCCceEEEec-------CCccceEeec
Confidence            45699999999999999999999  89999999986       4467777764

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.49  E-value=2.1e-07  Score=66.51  Aligned_cols=35  Identities=29%  Similarity=0.507  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+||+|||+|++|+++|..|++  .|.+|+|+|+..
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~--~G~~V~liE~~~   38 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQ--HGFSVAVLEHAA   38 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence            44799999999999999999999  899999999874

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.49  E-value=3e-07  Score=65.81  Aligned_cols=36  Identities=33%  Similarity=0.503  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      +||+|||||++|+++|..|++..++++|+|+|+.+.
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            589999999999999999998212499999999754

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.49  E-value=2e-07  Score=66.29  Aligned_cols=34  Identities=35%  Similarity=0.566  Sum_probs=31.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFNM   64 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~~~   64 (90)
                      ||+|||||++|+++|+.|++  .| ++|+|+|+...+
T Consensus         1 dv~IvGaG~aGl~~A~~L~~--~G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSR--LGKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhc--CCCceEEEEeCCCcc
Confidence            69999999999999999999  89 999999997554

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.48  E-value=3.3e-07  Score=68.66  Aligned_cols=45  Identities=20%  Similarity=0.352  Sum_probs=35.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEcc-CCCCCCCccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD-KFNMDTTSDG   70 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~-~~~~~~~s~~   70 (90)
                      ...||+|||||++|+++|+.|++..++.+|+|+|+ +.....+|..
T Consensus         5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~~   50 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNE   50 (497)
T ss_pred             ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCCC
Confidence            34699999999999999999998556899999999 5433444433

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.48  E-value=2.5e-07  Score=67.40  Aligned_cols=38  Identities=29%  Similarity=0.563  Sum_probs=32.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCC--CCcEEEEccCCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFP--NCDVTVIADKFNMD   65 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~--g~~v~vie~~~~~~   65 (90)
                      .||+|||||++||++|+.|.++.+  |.+|+|+|++...+
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G   42 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG   42 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence            589999999999999999998322  89999999976543

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>KOG0029|consensus

Probab=98.48  E-value=3e-07  Score=68.97  Aligned_cols=38  Identities=39%  Similarity=0.594  Sum_probs=33.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...++|+|||||++||++|..|.+  .|.+|+|+|.+.+.
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~--~G~~V~VLEARdRv   50 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQD--FGFDVLVLEARDRV   50 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHH--cCCceEEEeccCCc
Confidence            345799999999999999999999  89999999987543

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.48  E-value=2.2e-07  Score=66.25  Aligned_cols=34  Identities=35%  Similarity=0.476  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCC---CCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFP---NCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~---g~~v~vie~~   61 (90)
                      +..||+|||+|++|+++|+.|++  .   |.+|+|+|+.
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~--~~~~G~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSR--LSHGGLPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhh--cccCCCEEEEEeCC
Confidence            34699999999999999999998  7   9999999995

>PRK07190 hypothetical protein; Provisional

Probab=98.47  E-value=3.2e-07  Score=68.27  Aligned_cols=37  Identities=24%  Similarity=0.245  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...||+|||+|++|+++|+.|++  .|.+|+|+|+.+.+
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar--~Gi~V~llEr~~~~   40 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQL--CGLNTVIVDKSDGP   40 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHH--cCCCEEEEeCCCcc
Confidence            34699999999999999999999  89999999998654

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.47  E-value=2.3e-07  Score=68.03  Aligned_cols=35  Identities=26%  Similarity=0.393  Sum_probs=27.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      +||+|||||++||.+|+.+++  .|.+|+|+|++...
T Consensus         1 ydviIIGgGaAGl~aA~~aa~--~g~~V~vlE~~~~~   35 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAE--KGARVLVLERNKRV   35 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHH--TT--EEEE-SSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCccc
Confidence            489999999999999999999  89999999998665

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR02730 carot_isom carotene isomerase

Probab=98.47  E-value=2.8e-07  Score=68.28  Aligned_cols=37  Identities=27%  Similarity=0.330  Sum_probs=33.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      +|++|||+|+.||++|..|++  .|.+|+|+||+..+++
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~--~G~~V~vlE~~~~~GG   37 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAV--KGAKVLVLERYLIPGG   37 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHH--CCCcEEEEECCCCCCC
Confidence            489999999999999999999  8999999999877654

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.47  E-value=2.1e-07  Score=67.83  Aligned_cols=39  Identities=23%  Similarity=0.360  Sum_probs=34.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      +.+||+|||+|++|++||..+.+  .|.+|+|||+.+..+.
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~--~G~~V~lid~~~k~Gr   40 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAK--AGRRVLLIDKGPKLGR   40 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhh--cCCEEEEEecCccccc
Confidence            34799999999999999999999  8999999999876543

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.47  E-value=2.7e-07  Score=66.55  Aligned_cols=33  Identities=33%  Similarity=0.630  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..||+|||||++|+++|+.|.+  .|++|+|+|+.
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~--~G~~v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKE--SDLRIAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHh--CCCEEEEEcCC
Confidence            4699999999999999999999  89999999985

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.47  E-value=3.8e-07  Score=66.83  Aligned_cols=37  Identities=22%  Similarity=0.330  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ..+|++|||+|++|+.+|..|++  .|.+|+|+|+....
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~--~G~~v~liE~~~~~   40 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAK--LGKRVAVIERYRNV   40 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHh--CCCEEEEEeccccc
Confidence            45799999999999999999999  89999999986433

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.47  E-value=3.9e-07  Score=65.67  Aligned_cols=34  Identities=41%  Similarity=0.516  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+|+|||||++|+++|+.|++  .|.+|+|+|+.+.
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~--~G~~V~i~E~~~~   36 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAA--RGWAVTIIEKAQE   36 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCc
Confidence            689999999999999999999  8999999999753

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.46  E-value=3e-07  Score=73.22  Aligned_cols=35  Identities=29%  Similarity=0.326  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..++|+|||+|++||++|+.|++  .|++|+|||+..
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar--~G~~VtVfE~~~  339 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAV--EGFPVTVFEAFH  339 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCC
Confidence            45799999999999999999999  899999999864

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.46  E-value=4.5e-07  Score=68.59  Aligned_cols=48  Identities=25%  Similarity=0.376  Sum_probs=40.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeee
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF   75 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~   75 (90)
                      ...||+|||+|.+|+++|+.+++  .|.+|+|+||....++++..++|++
T Consensus         8 ~~~DVvVVG~G~aGl~AA~~aa~--~G~~v~llEk~~~~gG~~~~s~g~~   55 (574)
T PRK12842          8 LTCDVLVIGSGAGGLSAAITARK--LGLDVVVLEKEPVFGGTTAFSGGVL   55 (574)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--cCCeEEEEecCCCCCCccceeCcEe
Confidence            45799999999999999999999  8999999999876666555556643

>PRK06834 hypothetical protein; Provisional

Probab=98.46  E-value=4.7e-07  Score=67.41  Aligned_cols=37  Identities=35%  Similarity=0.478  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...||+|||+|++|+++|+.|++  .|.+|+|+|+...+
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~--~G~~v~vlEr~~~~   38 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELAL--AGVDVAIVERRPNQ   38 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCC
Confidence            34799999999999999999999  89999999997543

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.45  E-value=3.6e-07  Score=68.84  Aligned_cols=44  Identities=30%  Similarity=0.492  Sum_probs=35.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCee
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGL   74 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~   74 (90)
                      ||+|||+|.+|+++|+.+++  .|.+|+|+||....++.+...+|.
T Consensus         1 DVlVVG~G~AGl~AA~~aae--~G~~V~lleK~~~~~g~s~~a~Gg   44 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAK--AGLNTAVISKVYPTRSHTVAAQGG   44 (566)
T ss_pred             CEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCCCcchhhccC
Confidence            79999999999999999999  899999999986554444444443

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.45  E-value=4.6e-07  Score=67.73  Aligned_cols=49  Identities=20%  Similarity=0.342  Sum_probs=38.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCc-C-eeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGA-A-GLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~-~-g~~~~   77 (90)
                      ..+||+|||+| +|+++|+.+++  .|.+|+|+||....++++... + |++.+
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~--~G~~V~vlEk~~~~Gg~t~~~~g~g~~~~   56 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAR--EGLSVALVEATDKFGGTTAYSGGGGMWFP   56 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHH--CCCcEEEEecCCCCCcceecCCCceeccC
Confidence            35799999999 99999999999  899999999987655544433 3 35554

>KOG3923|consensus

Probab=98.45  E-value=2.9e-07  Score=65.17  Aligned_cols=55  Identities=53%  Similarity=0.771  Sum_probs=47.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh-----hCCCCcEEEEccCCCCCCCccCcCeeeecCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQR-----RFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNF   81 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~-----~~~g~~v~vie~~~~~~~~s~~~~g~~~~~~~~   81 (90)
                      ..+|+|||+|..|+++|+.+.+     ..+..+|++++..+.+...|+.++|++.|....
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~   62 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDLSD   62 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecccCC
Confidence            3589999999999999988876     235679999999999999999999999995433

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.44  E-value=4e-07  Score=68.91  Aligned_cols=50  Identities=34%  Similarity=0.567  Sum_probs=37.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCcc-CcCeeee
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSD-GAAGLFE   76 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~-~~~g~~~   76 (90)
                      ..||+|||+|.+|+++|+.+++..++.+|+|+||....++.+. ..+|+..
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a   53 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAA   53 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhh
Confidence            4699999999999999999997323589999999865444344 4444433

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.44  E-value=3.6e-07  Score=69.53  Aligned_cols=50  Identities=22%  Similarity=0.338  Sum_probs=40.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ...||+|||+|.+|+++|+.+++  .|.+|+|+||....++.+..+.|.+..
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~--~G~~V~lveK~~~~~g~s~~a~Ggi~a   60 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAE--AGLKTACITKVFPTRSHTVAAQGGISA   60 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCCCcchhhhcCCccc
Confidence            45799999999999999999999  899999999986555555555555443

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.44  E-value=3e-07  Score=69.08  Aligned_cols=48  Identities=21%  Similarity=0.272  Sum_probs=37.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC-CCCCccCcCeeee
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN-MDTTSDGAAGLFE   76 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~-~~~~s~~~~g~~~   76 (90)
                      ...||+|||+|.+|+++|+.+ +  .|.+|+|+||... .++++..++|.++
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~--~G~~VilleK~~~~~gG~s~~a~gg~~   54 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-E--RGKNVVIVSKGLFGKSGCTVMAEGGYN   54 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-h--cCCCEEEEEccCCCCCccccccCceEE
Confidence            346999999999999999999 7  7999999999754 2334444455443

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.44  E-value=4e-07  Score=67.42  Aligned_cols=35  Identities=43%  Similarity=0.661  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      +++|||||++||++|++|++..+..+++|+|++..
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r   36 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDR   36 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            69999999999999999999655599999998643

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.44  E-value=6.4e-07  Score=67.61  Aligned_cols=50  Identities=18%  Similarity=0.378  Sum_probs=39.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCc-Ceeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGA-AGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~-~g~~~~   77 (90)
                      ...||+|||+|.+|+++|+.+++  .|.+|+|+||....++++..+ ++++.+
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~--~G~~v~llEk~~~~gG~~~~~~g~~~~~   56 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAH--RGLSTVVVEKAPHYGGSTARSGGGVWIP   56 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCccccccCceeecC
Confidence            45799999999999999999999  899999999986655544444 444433

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.44  E-value=3.4e-07  Score=70.20  Aligned_cols=50  Identities=22%  Similarity=0.337  Sum_probs=40.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ...||+|||+|.+|+.+|+.+++  .|.+|+|+||....++.+..++|.++.
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae--~G~~VilveK~~~~~g~s~~a~Ggi~a   98 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSE--HGFNTACITKLFPTRSHTVAAQGGINA   98 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHh--cCCcEEEEEcCCCCCCchHHhhcCcee
Confidence            34699999999999999999998  899999999987665555555555443

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.43  E-value=3.2e-07  Score=67.88  Aligned_cols=35  Identities=29%  Similarity=0.432  Sum_probs=31.9

Q ss_pred             EEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        30 v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      |+|||+|++||++|..|++  .|.+|+|+|++..+++
T Consensus         1 vvVIGaG~~GL~aA~~La~--~G~~V~VlE~~~~~GG   35 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAA--AGIPVTVVEQRDKPGG   35 (502)
T ss_pred             CEEECcCHHHHHHHHHHHh--CCCcEEEEECCCCCcC
Confidence            5899999999999999999  8999999999877654

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.42  E-value=5.7e-07  Score=67.34  Aligned_cols=37  Identities=19%  Similarity=0.265  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+||+|||||+.|+++|+.|++..+..+|+|+|+..
T Consensus        44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~   80 (497)
T PTZ00383         44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS   80 (497)
T ss_pred             CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence            3479999999999999999999843447999999974

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.42  E-value=4.8e-07  Score=68.72  Aligned_cols=48  Identities=19%  Similarity=0.263  Sum_probs=39.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCee
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGL   74 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~   74 (90)
                      ....||+|||+|.+|+++|+.+++  .|.+|+|+||....++++..++|.
T Consensus         9 ~~~~DVvVVG~G~AGl~AA~~aae--~G~~VivlEk~~~~gG~t~~s~G~   56 (584)
T PRK12835          9 DREVDVLVVGSGGGGMTAALTAAA--RGLDTLVVEKSAHFGGSTALSGGG   56 (584)
T ss_pred             cCcCCEEEECccHHHHHHHHHHHH--CCCcEEEEEcCCCCCchHHHhCCC
Confidence            345799999999999999999999  899999999987655544444443

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.41  E-value=2.8e-07  Score=70.86  Aligned_cols=49  Identities=22%  Similarity=0.303  Sum_probs=39.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE   76 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~   76 (90)
                      ..+||+|||+|.+|+.+|+.+++  .|.+|+|+||.+..++.|..++|.+.
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae--~G~~VivleK~~~~~s~s~~a~GGi~   52 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQ--RGLDTIVLSLVPAKRSHSAAAQGGMQ   52 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHH--cCCCEEEEeCCCCCCcchHHHhhhHH
Confidence            35799999999999999999999  89999999998765555555544443

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.41  E-value=5.2e-07  Score=65.93  Aligned_cols=34  Identities=24%  Similarity=0.369  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|++|||+|++|+.+|..|++  .|.+|+|+|+..
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~--~g~~V~lie~~~   36 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAK--AGWRVALIEQSN   36 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHH--CCCeEEEEcCCC
Confidence            4799999999999999999999  899999999864

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.40  E-value=4.7e-07  Score=68.64  Aligned_cols=48  Identities=23%  Similarity=0.336  Sum_probs=38.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE   76 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~   76 (90)
                      ...||+|||+|.+|+++|+.+++  . .+|+|+||....++++..++|.+.
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~--~-~~VilleK~~~~~g~s~~a~Ggi~   51 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGP--R-ARTAVLTKLYPTRSHTGAAQGGMC   51 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHh--C-CCEEEEeCCCCCCCCchhhhcchh
Confidence            35799999999999999999987  5 899999998665555554554443

>PRK05868 hypothetical protein; Validated

Probab=98.40  E-value=5.8e-07  Score=64.55  Aligned_cols=35  Identities=26%  Similarity=0.376  Sum_probs=31.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      .+|+|||+|++|+++|+.|++  .|++|+|+|+.+.+
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~--~G~~v~viE~~~~~   36 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGR--HGYSVTMVERHPGL   36 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCCEEEEcCCCCC
Confidence            489999999999999999999  89999999997543

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.40  E-value=3.6e-07  Score=69.44  Aligned_cols=48  Identities=19%  Similarity=0.382  Sum_probs=39.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE   76 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~   76 (90)
                      ..||+|||+|.+|+++|+.+++  .|.+|+|+||....++.+..++|.+.
T Consensus         7 ~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lleK~~~~~g~t~~a~Ggi~   54 (588)
T PRK08958          7 EFDAVVIGAGGAGMRAALQISQ--SGQSCALLSKVFPTRSHTVSAQGGIT   54 (588)
T ss_pred             ccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCCCCccHHhhhhHh
Confidence            4699999999999999999998  89999999998655555555555543

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.40  E-value=9.1e-07  Score=63.35  Aligned_cols=33  Identities=30%  Similarity=0.504  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .||+|||||++|+++|+.|++  .|++|+|+|+.+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~--~G~~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQ--KGIKTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHc--CCCeEEEecCCC
Confidence            489999999999999999999  899999999863

>PRK07588 hypothetical protein; Provisional

Probab=98.39  E-value=5.4e-07  Score=64.58  Aligned_cols=33  Identities=42%  Similarity=0.447  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      +|+|||||++|+++|+.|++  .|.+|+|+|+.+.
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~--~G~~v~v~E~~~~   34 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRR--YGHEPTLIERAPE   34 (391)
T ss_pred             eEEEECccHHHHHHHHHHHH--CCCceEEEeCCCC
Confidence            79999999999999999999  8999999999754

>PRK07538 hypothetical protein; Provisional

Probab=98.39  E-value=5.5e-07  Score=65.16  Aligned_cols=33  Identities=39%  Similarity=0.511  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ||+|||||++|+++|+.|++  .|++|+|+|+.+.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~   34 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQ--RGIEVVVFEAAPE   34 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHh--CCCcEEEEEcCCc
Confidence            79999999999999999999  8999999999754

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.38  E-value=4.2e-07  Score=67.19  Aligned_cols=46  Identities=33%  Similarity=0.478  Sum_probs=35.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE   76 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~   76 (90)
                      .||+|||+|.+|+++|+.+++  .|.+|+|+||... ..++....|.++
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae--~G~~V~liek~~~-~~~s~~a~ggi~   47 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAK--KGFDVTIIGPGIK-KSNSYLAQAGIA   47 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHH--CCCeEEEEeCCCC-CCCcHHHcCCcc
Confidence            589999999999999999999  8999999999753 223333444443

>PRK11445 putative oxidoreductase; Provisional

Probab=98.37  E-value=7.6e-07  Score=63.40  Aligned_cols=33  Identities=33%  Similarity=0.344  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      +||+|||+|++|+++|+.|++  . .+|+|+|+.+.
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~--~-~~V~liE~~~~   34 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAG--K-MKVIAIDKKHQ   34 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhc--c-CCEEEEECCCc
Confidence            589999999999999999999  7 99999998753

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.37  E-value=9.2e-07  Score=65.13  Aligned_cols=34  Identities=26%  Similarity=0.428  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|++|||+|++|+.+|..+++  .|.+|+|+|++.
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~--~G~~V~lie~~~   37 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQ--LGLKTAVVEKKY   37 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecCC
Confidence            4799999999999999999999  899999999863

>PRK12839 hypothetical protein; Provisional

Probab=98.37  E-value=1.3e-06  Score=66.31  Aligned_cols=51  Identities=20%  Similarity=0.282  Sum_probs=39.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcC-eeeec
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAA-GLFEP   77 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~-g~~~~   77 (90)
                      ....||+|||+|.+|+++|+.+.+  .|.+|+|+||....++.+...+ +++.+
T Consensus         6 ~~~~dv~ViG~G~aG~~aa~~~~~--~g~~v~~iek~~~~gg~~~~~~g~~~~~   57 (572)
T PRK12839          6 THTYDVVVVGSGAGGLSAAVAAAY--GGAKVLVVEKASTCGGATAWSGGWMWTP   57 (572)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCccccccCCeeecC
Confidence            346799999999999999999999  8999999999865554444444 44444

>PRK06116 glutathione reductase; Validated

Probab=98.37  E-value=7.4e-07  Score=65.25  Aligned_cols=33  Identities=21%  Similarity=0.350  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|++|||+|++|+.+|..+++  .|.+|+|+|+.
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~--~G~~V~liE~~   36 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAM--YGAKVALIEAK   36 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecc
Confidence            4799999999999999999999  89999999986

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.37  E-value=1.2e-06  Score=67.11  Aligned_cols=37  Identities=24%  Similarity=0.332  Sum_probs=32.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCC-CCcEEEEccCCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADKFN   63 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~-g~~v~vie~~~~   63 (90)
                      ....||+|||||++||++|+.|++  . |++|+|||+.+.
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar--~~Gi~v~IiE~~~~   67 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSA--FPDITTRIVERKPG   67 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhc--CCCCcEEEEEcCCC
Confidence            345799999999999999999998  5 899999999754

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.36  E-value=7.2e-07  Score=58.25  Aligned_cols=34  Identities=32%  Similarity=0.407  Sum_probs=26.2

Q ss_pred             EEECCCHHHHHHHHHHHhhCCCCc-EEEEccCCCCCC
Q psy1704          31 AILGAGIIGLSTALELQRRFPNCD-VTVIADKFNMDT   66 (90)
Q Consensus        31 ~IiG~G~~Gl~~A~~l~~~~~g~~-v~vie~~~~~~~   66 (90)
                      +|||||++||++|..|.+  .|.+ ++|+|++..+++
T Consensus         1 ~IIGaG~aGl~~a~~l~~--~g~~~v~v~e~~~~~Gg   35 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLE--RGIDPVVVLERNDRPGG   35 (203)
T ss_dssp             EEE--SHHHHHHHHHHHH--TT---EEEEESSSSSTT
T ss_pred             CEECcCHHHHHHHHHHHh--CCCCcEEEEeCCCCCCC
Confidence            699999999999999999  7888 999999865543

...

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.36  E-value=6.9e-07  Score=62.83  Aligned_cols=32  Identities=41%  Similarity=0.610  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|+|||+|++|+++|+.|++  .|++|+||||..
T Consensus         3 siaIVGaGiAGl~aA~~L~~--aG~~vtV~eKg~   34 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALRE--AGREVTVFEKGR   34 (331)
T ss_pred             cEEEEccchHHHHHHHHHHh--cCcEEEEEEcCC
Confidence            69999999999999999999  999999999963

>KOG2614|consensus

Probab=98.36  E-value=8.7e-07  Score=64.85  Aligned_cols=38  Identities=42%  Similarity=0.643  Sum_probs=34.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTT   67 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~   67 (90)
                      .+|+|||||++|+++|..|.+  .|++|+|+|+.+.+++.
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r--~G~~v~VlE~~e~~R~~   40 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHR--KGIDVVVLESREDPRGE   40 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHH--cCCeEEEEeeccccccC
Confidence            589999999999999999999  89999999998776554

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.36  E-value=8.6e-07  Score=64.77  Aligned_cols=36  Identities=33%  Similarity=0.399  Sum_probs=32.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      +|+|||+|++||++|+.|.+  .|.+|+|+|+.+..++
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~--~G~~v~vlE~~~~~GG   36 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLAD--AGHTPIVLEARDVLGG   36 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCC
Confidence            58999999999999999999  8999999999866544

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.35  E-value=8.2e-07  Score=66.97  Aligned_cols=41  Identities=32%  Similarity=0.472  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ++|+|||||++||+++..|.+  .|.+++++|++.       ..||+|+.
T Consensus         2 krVaVIGaG~sGL~a~k~l~e--~g~~~~~fE~~~-------~iGG~W~~   42 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLE--EGLEVTCFEKSD-------DIGGLWRY   42 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHH--TT-EEEEEESSS-------SSSGGGCH
T ss_pred             CEEEEECccHHHHHHHHHHHH--CCCCCeEEecCC-------CCCccCee
Confidence            589999999999999999999  899999999864       35666654

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.35  E-value=8e-07  Score=65.08  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ||+|||||++|+++|+.+++  .|.+|+|+|+....++
T Consensus         1 DVVVvGgG~aG~~AAi~AAr--~G~~VlLiE~~~~lGG   36 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAAR--AGAKVLLIEKGGFLGG   36 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHH--TTS-EEEE-SSSSSTG
T ss_pred             CEEEECccHHHHHHHHHHHH--CCCEEEEEECCccCCC
Confidence            79999999999999999999  8999999999866544

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.35  E-value=1e-06  Score=66.42  Aligned_cols=50  Identities=20%  Similarity=0.264  Sum_probs=44.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ..+|++|||||+.|+.+|..++.  .|++|+++|++....++|..+.++++-
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~--RGl~v~LvE~~D~AsGTSsrstkLiHG   60 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAG--RGLKVALVEKGDLASGTSSRSTKLIHG   60 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHh--CCCeEEEEecCcccCcccCccccCccc
Confidence            56899999999999999999999  899999999998888888878777765

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.34  E-value=1e-06  Score=66.07  Aligned_cols=36  Identities=31%  Similarity=0.587  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ...||+|||+|++|+++|+.|.+  .|.+|+|+|+...
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~--~G~~v~viE~~~~   57 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQ--QGVPVVLLDDDDT   57 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCCC
Confidence            45799999999999999999999  8999999999753

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.34  E-value=1.2e-06  Score=64.77  Aligned_cols=40  Identities=25%  Similarity=0.462  Sum_probs=34.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCc-EEEEccCCCCCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADKFNMDT   66 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~-v~vie~~~~~~~   66 (90)
                      ....|++|||||.+||++|++|++  .+.+ ++|+||+...++
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~--~g~~~~~i~Ek~~~~Gg   46 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQ--AGVPDFVIFEKRDDVGG   46 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHH--cCCCcEEEEEccCCcCC
Confidence            355799999999999999999999  7887 999999854443

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.34  E-value=1.3e-06  Score=65.46  Aligned_cols=39  Identities=23%  Similarity=0.285  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...+|+|||+|++|+.+|..|+++..+.+|+|||+.+.+
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p   63 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP   63 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence            457899999999999999999864468999999997544

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.33  E-value=5.9e-07  Score=65.95  Aligned_cols=48  Identities=25%  Similarity=0.340  Sum_probs=38.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE   76 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~   76 (90)
                      ..+||+|||+|.+|+++|+.+ .  .|.+|+|+||....++.+..++|.+.
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a-~--~G~~V~lleK~~~~gg~s~~a~ggi~   50 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNL-R--KDLKILMVSKGKLNECNTYLAQGGIS   50 (433)
T ss_pred             ccccEEEECchHHHHHHHHHh-c--cCCCEEEEecCCCCCCchHHHhHhhe
Confidence            347999999999999999997 4  58999999998766665665555444

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.33  E-value=1.1e-06  Score=64.67  Aligned_cols=34  Identities=15%  Similarity=0.254  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|++|||+|++|+.+|..+++  .|.+|+|+|+..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~~~   35 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAE--HGAKALLVEAKK   35 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCcEEEecccc
Confidence            4799999999999999999999  899999999863

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.33  E-value=1.2e-06  Score=66.17  Aligned_cols=48  Identities=15%  Similarity=0.298  Sum_probs=39.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeee
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF   75 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~   75 (90)
                      ...||+|||+|.+|+++|+.+++  .|.+|+|+|+....++++..++|.+
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~--~G~~v~liEk~~~~gG~~~~s~g~~   52 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAAD--SGLEPLIVEKQDKVGGSTAMSGGVL   52 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCceeceeccee
Confidence            35799999999999999999999  8999999999865555555555443

>PLN02568 polyamine oxidase

Probab=98.33  E-value=1.2e-06  Score=66.19  Aligned_cols=38  Identities=26%  Similarity=0.497  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCC-----CcEEEEccCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPN-----CDVTVIADKFNMD   65 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g-----~~v~vie~~~~~~   65 (90)
                      ...+|+|||+|++||++|..|++  .|     .+|+|+|++...+
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~--~g~~~~~~~v~v~E~~~~~G   46 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYT--SSAANDMFELTVVEGGDRIG   46 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh--cccccCCceEEEEeCCCCcC
Confidence            34689999999999999999997  55     8999999976543

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.33  E-value=9.9e-07  Score=63.02  Aligned_cols=33  Identities=39%  Similarity=0.618  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ||+|||+|++|+.+|+.|++  .|.+|+|+|+.+.
T Consensus         1 DviIiGaG~AGl~~A~~la~--~g~~v~liE~~~~   33 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELAR--PGLRVQLIEPHPP   33 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCC
Confidence            79999999999999999998  8999999998743

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.33  E-value=1e-06  Score=63.38  Aligned_cols=36  Identities=39%  Similarity=0.414  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ||+|||+|++|+++|+.|.+..++.+|+|+|+....
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            799999999999999999332289999999987543

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.32  E-value=1.2e-06  Score=65.54  Aligned_cols=37  Identities=30%  Similarity=0.366  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...||+|||+|++|+.+|..|.+  .|.+|+|+|+...+
T Consensus         9 ~~~dV~IVGaGp~Gl~lA~~L~~--~G~~v~v~Er~~~~   45 (538)
T PRK06183          9 HDTDVVIVGAGPVGLTLANLLGQ--YGVRVLVLERWPTL   45 (538)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCC
Confidence            45799999999999999999999  89999999997543

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.32  E-value=9.7e-07  Score=64.02  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .||+|||+|++|+++|+.|++  .|.+|+|+|+...
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~--~G~~V~llE~~~~   34 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLAS--AGIQTFLLERKPD   34 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHh--CCCcEEEEecCCC
Confidence            389999999999999999999  8999999998743

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.32  E-value=1e-06  Score=64.55  Aligned_cols=38  Identities=24%  Similarity=0.437  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhC----CCCcEEEEccCCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRF----PNCDVTVIADKFNMD   65 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~----~g~~v~vie~~~~~~   65 (90)
                      ++|+|||||++||++|+.|.+..    .+.+|+|+|++...+
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G   43 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG   43 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence            37999999999999999998721    147899999976543

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.31  E-value=2.1e-06  Score=65.09  Aligned_cols=51  Identities=16%  Similarity=0.385  Sum_probs=40.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCe-eeec
Q psy1704          24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG-LFEP   77 (90)
Q Consensus        24 ~~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g-~~~~   77 (90)
                      ....+||+|||+| +|+++|+.+++  .|.+|+|+||....++++..++| +|.+
T Consensus        13 ~d~e~DvvvvG~G-~G~~aA~~a~~--~G~~v~v~Ek~~~~GG~~~~~gG~~~~~   64 (564)
T PRK12845         13 RDTTVDLLVVGSG-TGMAAALAAHE--LGLSVLIVEKSSYVGGSTARSGGAFWLP   64 (564)
T ss_pred             CCceeCEEEECCc-HHHHHHHHHHH--CCCcEEEEecCCCCcCcccCcCCCEecC
Confidence            3456899999999 89999999999  89999999998666665555544 4443

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.31  E-value=1.2e-06  Score=60.05  Aligned_cols=33  Identities=33%  Similarity=0.426  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|++|||+|++|+.+|..|++  .+.+|+|+|+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~   33 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAAR--ANLKTLIIEGME   33 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHH--CCCCEEEEeccC
Confidence            489999999999999999998  799999999864

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.30  E-value=1.1e-06  Score=64.10  Aligned_cols=34  Identities=18%  Similarity=0.307  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|++|||+|++|+.+|..+++  .|.+|+|+|++.
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~--~g~~V~liE~~~   36 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLAS--AGKKVALVEESK   36 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHh--CCCEEEEEecCC
Confidence            4799999999999999999999  899999999874

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.30  E-value=1e-06  Score=67.68  Aligned_cols=47  Identities=26%  Similarity=0.294  Sum_probs=36.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC-CCCccCcCee
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM-DTTSDGAAGL   74 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~-~~~s~~~~g~   74 (90)
                      ...||+|||+|.+|+++|+.+++  .|.+|+|+||...+ ++.+..++|.
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae--~G~~VilieK~~~~~~g~s~~a~GG   81 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGE--LGYNVKVFCYQDSPRRAHSIAAQGG   81 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHH--cCCcEEEEecCCCCCcchhHHhhhc
Confidence            45799999999999999999998  89999999986544 2344444333

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.30  E-value=1.6e-06  Score=63.91  Aligned_cols=35  Identities=14%  Similarity=0.234  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|++|||+|++|+.+|..+++  .|.+|+|+|+..
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~~   37 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQ--LGLKTALVEKGK   37 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHh--CCCeEEEEEccC
Confidence            35799999999999999999999  899999999863

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.29  E-value=1.5e-06  Score=56.54  Aligned_cols=32  Identities=47%  Similarity=0.709  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ||+|||+|++|+.+|..|.+  ++.+++++|+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~--~~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELAR--PGAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--TTSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhc--CCCeEEEEeccc
Confidence            69999999999999999998  899999998753

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.29  E-value=1.5e-06  Score=62.81  Aligned_cols=33  Identities=33%  Similarity=0.545  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFN   63 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~~   63 (90)
                      +|+|||||++||++|+.|++  .| .+|+|+|+.+.
T Consensus         2 ~V~IiGgGiaGla~A~~L~~--~g~~~v~v~Er~~~   35 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCK--HSHLNVQLFEAAPA   35 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHh--cCCCCEEEEecCCc
Confidence            69999999999999999998  77 69999999754

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.29  E-value=1.4e-06  Score=63.91  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ++|++|||+|++|+.+|..+++  .|.+|+|+|++
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAAN--HGAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHh--CCCcEEEEecC
Confidence            4799999999999999999999  89999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.29  E-value=1.5e-06  Score=64.10  Aligned_cols=33  Identities=21%  Similarity=0.366  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|++|||+|++|+.+|..+++  .|.+|+|+|+.
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~--~G~~V~liE~~   35 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQ--LGLKVACVEGR   35 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHh--CCCeEEEEecC
Confidence            4799999999999999999999  89999999974

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.29  E-value=8e-07  Score=66.52  Aligned_cols=48  Identities=27%  Similarity=0.260  Sum_probs=35.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC-CCCccCcCeeee
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM-DTTSDGAAGLFE   76 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~-~~~s~~~~g~~~   76 (90)
                      ....||+|||+|.+|+++|+.++.    .+|+|+||...+ ++++..++|.+.
T Consensus         7 ~~~~DVlVIG~G~AGl~AAl~Aa~----~~V~lleK~~~~~gg~s~~a~Ggi~   55 (513)
T PRK07512          7 ILTGRPVIVGGGLAGLMAALKLAP----RPVVVLSPAPLGEGASSAWAQGGIA   55 (513)
T ss_pred             CCcCCEEEECchHHHHHHHHHhCc----CCEEEEECCCCCCCcchHHhhhccc
Confidence            345799999999999999998863    499999998753 344444444443

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.28  E-value=2e-06  Score=65.31  Aligned_cols=50  Identities=20%  Similarity=0.302  Sum_probs=41.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ..+||+|||+|.+||.+|..+++  .+.+|+|+||.+..++++..++|.++.
T Consensus         5 ~~~DvvVIG~G~AGl~AAi~aa~--~g~~V~l~~K~~~~rg~t~~a~gG~~a   54 (562)
T COG1053           5 HEFDVVVIGGGGAGLRAAIEAAE--AGLKVALLSKAPPKRGHTVAAQGGINA   54 (562)
T ss_pred             ccCCEEEECCcHHHHHHHHHHHh--cCCcEEEEEccccCCCchhhhcccccc
Confidence            45799999999999999999999  889999999987666655555555444

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=1.3e-06  Score=65.18  Aligned_cols=36  Identities=39%  Similarity=0.578  Sum_probs=32.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      ++|+|+|||++||++|+.|++  .|.+|+|+|.+...+
T Consensus         1 ~rVai~GaG~AgL~~a~~La~--~g~~vt~~ea~~~~G   36 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELAD--AGYDVTLYEARDRLG   36 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHh--CCCceEEEeccCccC
Confidence            379999999999999999999  899999999986543

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.28  E-value=8.9e-07  Score=66.11  Aligned_cols=56  Identities=27%  Similarity=0.260  Sum_probs=47.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeecCCCCCCCCcc
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLE   87 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~~~~~~~~~~~   87 (90)
                      ||+|||+|.+||.+|+.|.+   ..+|+|+.|......+|+.++|.+.......|+++.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~---~~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~   64 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAP---SFRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPEL   64 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCC---CCcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHH
Confidence            89999999999999999987   389999999877778889999999887666665543

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.28  E-value=1.5e-06  Score=69.70  Aligned_cols=36  Identities=47%  Similarity=0.585  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..++|+|||||++|+++|+.|++  .|.+|+|+|+.+.
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr--~G~~VTV~Ek~~~  571 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLAR--AGHPVTVFEKKEK  571 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH--CCCeEEEEecccc
Confidence            34699999999999999999999  8999999998743

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12831 putative oxidoreductase; Provisional

Probab=98.28  E-value=2.2e-06  Score=63.51  Aligned_cols=36  Identities=33%  Similarity=0.504  Sum_probs=32.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...++|+|||+|++|+++|+.|++  .|.+|+|+|+..
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~--~G~~V~v~e~~~  173 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAK--MGYDVTIFEALH  173 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEecCC
Confidence            345799999999999999999999  899999999864

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.28  E-value=1.8e-06  Score=65.15  Aligned_cols=34  Identities=26%  Similarity=0.361  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+||+|||||++|+.+|..|++  .+.+|+|+|++.
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar--~g~~V~liE~~~   37 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGR--AKLDTLIIEKDD   37 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCC
Confidence            4799999999999999999999  899999999863

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PLN02463 lycopene beta cyclase

Probab=98.27  E-value=1.7e-06  Score=63.96  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...||+|||||++|+++|..|++  .|.+|+|+|+.+
T Consensus        27 ~~~DVvIVGaGpAGLalA~~La~--~Gl~V~liE~~~   61 (447)
T PLN02463         27 RVVDLVVVGGGPAGLAVAQQVSE--AGLSVCCIDPSP   61 (447)
T ss_pred             cCceEEEECCCHHHHHHHHHHHH--CCCeEEEeccCc
Confidence            34799999999999999999999  899999999864

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.27  E-value=2.1e-06  Score=63.52  Aligned_cols=34  Identities=24%  Similarity=0.340  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|++|||+|++|+.+|..+++  .|.+|+|+|+.+
T Consensus         4 ~~DvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~   37 (471)
T PRK06467          4 KTQVVVLGAGPAGYSAAFRAAD--LGLETVCVERYS   37 (471)
T ss_pred             cceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCC
Confidence            4799999999999999999999  899999999864

>PLN02985 squalene monooxygenase

Probab=98.26  E-value=1.7e-06  Score=64.90  Aligned_cols=35  Identities=31%  Similarity=0.439  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...||+|||||++|+++|+.|++  .|.+|+|+|+..
T Consensus        42 ~~~DViIVGAG~aGlalA~aLa~--~G~~V~vlEr~~   76 (514)
T PLN02985         42 GATDVIIVGAGVGGSALAYALAK--DGRRVHVIERDL   76 (514)
T ss_pred             CCceEEEECCCHHHHHHHHHHHH--cCCeEEEEECcC
Confidence            45799999999999999999999  899999999864

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.26  E-value=2e-06  Score=62.99  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|++|||+|++|+.+|..|.+  .|.+|+|+|++
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~   35 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAK--LGKKVALIEKG   35 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHH--CCCeEEEEeCC
Confidence            4799999999999999999999  89999999984

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.25  E-value=2e-06  Score=62.96  Aligned_cols=32  Identities=19%  Similarity=0.354  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|++|||+|++|+.+|..|++  .|.+|+|+|+.
T Consensus         2 yDvvVIG~G~aGl~aA~~la~--~G~~v~lie~~   33 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQ--LGLKVALVEKE   33 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHh--CCCeEEEEecC
Confidence            699999999999999999999  89999999984

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK14694 putative mercuric reductase; Provisional

Probab=98.25  E-value=2.6e-06  Score=62.83  Aligned_cols=35  Identities=26%  Similarity=0.405  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|++|||+|++|+.+|..|++  .|.+|+|||++.
T Consensus         5 ~~~dviVIGaG~aG~~aA~~l~~--~g~~v~lie~~~   39 (468)
T PRK14694          5 NNLHIAVIGSGGSAMAAALKATE--RGARVTLIERGT   39 (468)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEEccc
Confidence            45799999999999999999999  899999999864

>PRK06996 hypothetical protein; Provisional

Probab=98.25  E-value=2.8e-06  Score=61.30  Aligned_cols=37  Identities=30%  Similarity=0.445  Sum_probs=31.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCC----CcEEEEccCCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPN----CDVTVIADKFN   63 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g----~~v~vie~~~~   63 (90)
                      .+..||+|||||++|+++|+.|++  .|    ++|+|+|+...
T Consensus         9 ~~~~dv~IvGgGpaG~~~A~~L~~--~g~~~g~~v~l~e~~~~   49 (398)
T PRK06996          9 APDFDIAIVGAGPVGLALAGWLAR--RSATRALSIALIDAREP   49 (398)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhc--CCCcCCceEEEecCCCC
Confidence            345799999999999999999998  55    57999999743

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.25  E-value=1.7e-06  Score=66.88  Aligned_cols=35  Identities=31%  Similarity=0.484  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +..+|+|||||++|+++|+.|++  .|++|+|||+.+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r--~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKK--KGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEeccc
Confidence            44799999999999999999999  899999999964

>PTZ00367 squalene epoxidase; Provisional

Probab=98.24  E-value=1.2e-06  Score=66.52  Aligned_cols=35  Identities=23%  Similarity=0.326  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...||+|||||++|+++|+.|++  .|.+|+|+|+..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar--~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSK--QGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHh--cCCEEEEEcccc
Confidence            35799999999999999999999  899999999974

>KOG2820|consensus

Probab=98.24  E-value=2.2e-06  Score=61.73  Aligned_cols=53  Identities=28%  Similarity=0.408  Sum_probs=43.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC--CCCccCcCeeeecCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM--DTTSDGAAGLFEPSP   79 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~--~~~s~~~~g~~~~~~   79 (90)
                      ....+++|||+|+-|+++|+.|++  .|.++.++|+.+.|  +++|....-++++.+
T Consensus         5 ~~~~~viiVGAGVfG~stAyeLaK--~g~killLeqf~~ph~~GSShg~sRIiR~~Y   59 (399)
T KOG2820|consen    5 VKSRDVIIVGAGVFGLSTAYELAK--RGDKILLLEQFPLPHSRGSSHGISRIIRPAY   59 (399)
T ss_pred             ccceeEEEEcccccchHHHHHHHh--cCCeEEEEeccCCCcccCcccCcceeechhh
Confidence            345799999999999999999999  88999999998776  566666666777743

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.24  E-value=2.4e-06  Score=62.75  Aligned_cols=34  Identities=21%  Similarity=0.333  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|++|||+|++|+.+|..+++  .|.+|+|+|+..
T Consensus         4 ~yDvvVIGaGpaG~~aA~~aa~--~G~~V~liE~~~   37 (462)
T PRK06416          4 EYDVIVIGAGPGGYVAAIRAAQ--LGLKVAIVEKEK   37 (462)
T ss_pred             cccEEEECCCHHHHHHHHHHHH--CCCcEEEEeccc
Confidence            4799999999999999999999  899999999864

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.24  E-value=2.3e-06  Score=69.45  Aligned_cols=49  Identities=22%  Similarity=0.380  Sum_probs=39.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCc-Ceeee
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGA-AGLFE   76 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~-~g~~~   76 (90)
                      ...||+|||+|.+|+++|+.+++  .|.+|+|+||....++++... +|++.
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae--~Ga~VivlEK~~~~GG~s~~s~ggi~~  457 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAAS--CGAQVILLEKEAKLGGNSAKATSGING  457 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEEccCCCCCchhhccccccc
Confidence            45799999999999999999999  899999999987665555433 44443

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.24  E-value=4.2e-06  Score=63.49  Aligned_cols=49  Identities=24%  Similarity=0.321  Sum_probs=40.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeee
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF   75 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~   75 (90)
                      ....|++|||+|.+|+.+|+.+.+  .|.+|+|+||....++++..++|.+
T Consensus        14 ~~~~dvvvvG~G~aG~~aa~~~~~--~g~~v~l~ek~~~~gg~~~~s~g~~   62 (578)
T PRK12843         14 DAEFDVIVIGAGAAGMSAALFAAI--AGLKVLLVERTEYVGGTTATSAGTT   62 (578)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCcccccCcee
Confidence            345799999999999999999998  8999999999876666665555543

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.23  E-value=1.8e-06  Score=63.12  Aligned_cols=35  Identities=26%  Similarity=0.342  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhC--CCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~--~g~~v~vie~~~   62 (90)
                      +||+|||||++|+++|+.|++..  .|++|+|+|+.+
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~   37 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD   37 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence            48999999999999999998621  389999999953

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>TIGR02053 MerA mercuric reductase

Probab=98.23  E-value=2.1e-06  Score=63.06  Aligned_cols=33  Identities=15%  Similarity=0.324  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|++|||+|++|+.+|..+++  .|.+|+|+|++.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~--~g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAE--LGASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCc
Confidence            489999999999999999999  899999999864

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.22  E-value=3.2e-06  Score=64.85  Aligned_cols=36  Identities=42%  Similarity=0.497  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ...+|+|||+|++||++|..|++  .|.+|+|||+...
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~~  361 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHPE  361 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCC
Confidence            45799999999999999999999  8999999998643

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.22  E-value=3.7e-06  Score=63.85  Aligned_cols=47  Identities=23%  Similarity=0.312  Sum_probs=39.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCee
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGL   74 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~   74 (90)
                      ...|++|||+|.+|+++|+.+.+  .|.+|+||||....++.+...+|.
T Consensus        11 ~~~dvvvvG~G~aG~~aa~~~~~--~g~~v~~iek~~~~gg~~~~~~g~   57 (581)
T PRK06134         11 LECDVLVIGSGAAGLSAAVTAAW--HGLKVIVVEKDPVFGGTTAWSGGW   57 (581)
T ss_pred             CccCEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCccccccCce
Confidence            45799999999999999999999  899999999986555555555554

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.22  E-value=2.7e-06  Score=61.87  Aligned_cols=35  Identities=29%  Similarity=0.390  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      .|++|||||++|+++|..|.+  .|.+|+|+|++...
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~--~G~~V~viEk~~~i   36 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQ--LNKRVLVVEKRNHI   36 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCC
Confidence            489999999999999999998  79999999996543

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.22  E-value=2.6e-06  Score=68.28  Aligned_cols=36  Identities=39%  Similarity=0.421  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..++|+|||+|++||++|..|++  .|.+|+|||+...
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~--~G~~VtV~E~~~~  464 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVK--YGVDVTVYEALHV  464 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCC
Confidence            35799999999999999999999  8999999998643

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.21  E-value=1.7e-06  Score=65.98  Aligned_cols=37  Identities=19%  Similarity=0.346  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCC--CCcEEEEccCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFP--NCDVTVIADKFNMD   65 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~--g~~v~vie~~~~~~   65 (90)
                      ..||+|||+|.+|+++|+.+++  .  |.+|+|+||....+
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae--~~~G~~V~lieK~~~~~   49 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKE--WAPDLKVLIVEKANIKR   49 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHH--hCCCCeEEEEECCCcCC
Confidence            4799999999999999999988  6  89999999986543

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.21  E-value=2.8e-06  Score=62.85  Aligned_cols=34  Identities=24%  Similarity=0.381  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .||+|||||++|+.+|+.|++  .|.+|+|+|+.+.
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr--~Gl~V~LiE~rp~   36 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAK--RGVPVELYEMRPV   36 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccCc
Confidence            589999999999999999999  8999999997643

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.20  E-value=2.8e-06  Score=65.09  Aligned_cols=42  Identities=19%  Similarity=0.305  Sum_probs=34.3

Q ss_pred             cEEEECCCHHHHHHHHHHH----hhCCCCcEEEEccCCCCCCCccCcCe
Q psy1704          29 KVAILGAGIIGLSTALELQ----RRFPNCDVTVIADKFNMDTTSDGAAG   73 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~----~~~~g~~v~vie~~~~~~~~s~~~~g   73 (90)
                      ||+|||+|.+||++|+.++    +  .|.+|+|+||....+..+ .++|
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e--~G~~VilieK~~~~~s~s-~A~G   46 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDK--KGLKIVLVEKANLERSGA-VAQG   46 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhh--CCCeEEEEEccCCCCCCc-cccc
Confidence            7999999999999999997    5  689999999986544444 3455

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.20  E-value=4.2e-06  Score=65.13  Aligned_cols=35  Identities=40%  Similarity=0.544  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..++|+|||+|++|+++|..|++  .|.+|+|||+..
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~--~G~~V~v~e~~~  464 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAK--RGYDVTVFEALH  464 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence            45799999999999999999999  899999999863

>KOG2852|consensus

Probab=98.20  E-value=6.8e-07  Score=63.44  Aligned_cols=49  Identities=33%  Similarity=0.491  Sum_probs=43.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCC------CcEEEEccCCCCCCCccCcCeeeec
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPN------CDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g------~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ..+|+|+|||+.|.++||+|.+  ++      .+|++||+....+++|..++|++..
T Consensus        10 sk~I~IvGGGIiGvctayyLt~--~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~   64 (380)
T KOG2852|consen   10 SKKIVIVGGGIIGVCTAYYLTE--HPSFKKGELDITIFESKEIAGGASGKASGFLAK   64 (380)
T ss_pred             ceEEEEECCCceeeeeehhhhc--CCccCCCceeEEEEeecccccccccccchhhHh
Confidence            3699999999999999999998  43      7899999998888999999998874

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.20  E-value=4.3e-06  Score=61.60  Aligned_cols=36  Identities=39%  Similarity=0.561  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..++|+|||+|++|+.+|..|++  .|.+|+|+|+...
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~--~G~~V~vie~~~~  167 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAK--AGHSVTVFEALHK  167 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCC
Confidence            45799999999999999999999  8999999998643

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.18  E-value=3.2e-06  Score=62.74  Aligned_cols=35  Identities=43%  Similarity=0.624  Sum_probs=31.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      +++|||+|++|+++|+.|.+  .|.+|+|+|++...+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~--~G~~v~v~E~~~~~G   35 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVD--AGHEVDIYESRSFIG   35 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCCCC
Confidence            58999999999999999999  899999999986554

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.16  E-value=7.3e-06  Score=61.60  Aligned_cols=39  Identities=26%  Similarity=0.273  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      ...+|+|||+|++|+.+|..|..+ .+.+|+|||+.+.++
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pg   76 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPY   76 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCc
Confidence            346899999999999999977532 589999999986543

>PTZ00058 glutathione reductase; Provisional

Probab=98.16  E-value=6.8e-06  Score=62.41  Aligned_cols=35  Identities=17%  Similarity=0.381  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|++|||+|++|..+|..+++  .|.+|+++|++.
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~--~G~~ValIEk~~   81 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAAR--NKAKVALVEKDY   81 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHH--cCCeEEEEeccc
Confidence            45799999999999999999999  899999999864

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.16  E-value=4e-06  Score=67.26  Aligned_cols=36  Identities=44%  Similarity=0.550  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..++|+|||+|++|+++|+.|++  .|.+|+|+|+...
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar--~G~~VtV~Ek~~~  573 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLAR--AGHPVTVFEREEN  573 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecccc
Confidence            45799999999999999999999  8999999998754

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.15  E-value=7.1e-06  Score=64.61  Aligned_cols=38  Identities=26%  Similarity=0.399  Sum_probs=33.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      ...+|+|||+|++|+.+|+.|.+  .|.+|+|+|++...+
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~--~g~~v~v~E~~~r~G  274 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLS--MGFKVVVLEGRARPG  274 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeccccCC
Confidence            45799999999999999999999  899999999986553

>PLN02697 lycopene epsilon cyclase

Probab=98.14  E-value=7.1e-06  Score=61.98  Aligned_cols=33  Identities=24%  Similarity=0.405  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..||+|||+|++|+++|..|++  .|++|+++|+.
T Consensus       108 ~~DVvIVGaGPAGLalA~~Lak--~Gl~V~LIe~~  140 (529)
T PLN02697        108 TLDLVVIGCGPAGLALAAESAK--LGLNVGLIGPD  140 (529)
T ss_pred             cccEEEECcCHHHHHHHHHHHh--CCCcEEEecCc
Confidence            4799999999999999999999  89999999985

>TIGR00275 flavoprotein, HI0933 family

Probab=98.14  E-value=3.1e-06  Score=61.49  Aligned_cols=34  Identities=24%  Similarity=0.427  Sum_probs=30.4

Q ss_pred             EEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          31 AILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        31 ~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      +|||+|++|+++|+.+++  .|.+|+|+|+....+.
T Consensus         1 vIIGgG~aGl~aAi~aa~--~G~~V~llEk~~~~G~   34 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAR--EGLSVLLLEKNKKIGK   34 (400)
T ss_pred             CEEEEeHHHHHHHHHHHh--cCCcEEEEecCccccc
Confidence            599999999999999999  8999999999866544

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK10262 thioredoxin reductase; Provisional

Probab=98.14  E-value=5.9e-06  Score=57.96  Aligned_cols=34  Identities=29%  Similarity=0.433  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...|++|||+|++|+.+|..+.+  .+.+++++|+.
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~--~g~~~~~ie~~   38 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGM   38 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH--CCCCeEEEEee
Confidence            35799999999999999999999  78899999964

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=5.5e-06  Score=58.73  Aligned_cols=34  Identities=26%  Similarity=0.359  Sum_probs=29.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCc-EEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~-v~vie~~~   62 (90)
                      ..|++|||+|++||++|.++.+  .+++ ++|+|+..
T Consensus         3 ~~DviIIG~GPAGl~AAiya~r--~~l~~~li~~~~~   37 (305)
T COG0492           3 IYDVIIIGGGPAGLTAAIYAAR--AGLKVVLILEGGE   37 (305)
T ss_pred             eeeEEEECCCHHHHHHHHHHHH--cCCCcEEEEecCC
Confidence            4699999999999999999999  8888 66677653

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.13  E-value=6.9e-06  Score=60.80  Aligned_cols=36  Identities=36%  Similarity=0.496  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..++++|||+|++|+.+|..|++  .|.+|+|+|+.+.
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~--~G~~V~vie~~~~  177 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLAR--AGHKVTVFERADR  177 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHh--CCCcEEEEecCCC
Confidence            44699999999999999999999  8999999998754

>PLN02612 phytoene desaturase

Probab=98.13  E-value=7.9e-06  Score=61.96  Aligned_cols=37  Identities=32%  Similarity=0.374  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...+|+|||+|++|+++|+.|.+  .|.+|+|+|+....
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~--~g~~~~~~e~~~~~  128 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLAD--AGHKPILLEARDVL  128 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEecCCCC
Confidence            34689999999999999999999  89999999997554

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.12  E-value=9.3e-06  Score=61.88  Aligned_cols=42  Identities=26%  Similarity=0.378  Sum_probs=34.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhC--CCCcEEEEccCCCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKFNMDTT   67 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~--~g~~v~vie~~~~~~~~   67 (90)
                      ...+++|||+|++||++|++|.+..  +|.+|+|+|+...+++.
T Consensus        21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~   64 (576)
T PRK13977         21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGS   64 (576)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCC
Confidence            3469999999999999999998832  36899999998766543

>PLN02676 polyamine oxidase

Probab=98.11  E-value=7.5e-06  Score=61.07  Aligned_cols=39  Identities=26%  Similarity=0.438  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNMDT   66 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~~~~~   66 (90)
                      ...||+|||+|++||++|+.|.+  .|. +|+|+|++...++
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~--~g~~~v~vlE~~~~~GG   64 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSE--AGIEDILILEATDRIGG   64 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH--cCCCcEEEecCCCCCCC
Confidence            35699999999999999999999  787 6999999865443

>PRK13748 putative mercuric reductase; Provisional

Probab=98.10  E-value=6e-06  Score=61.94  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+|++|||+|++|+.+|..+++  .|.+|+|+|++
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~--~G~~v~lie~~  130 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVE--QGARVTLIERG  130 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh--CCCeEEEEecC
Confidence            35799999999999999999999  89999999987

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.10  E-value=7.4e-06  Score=60.59  Aligned_cols=32  Identities=25%  Similarity=0.373  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD   60 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~   60 (90)
                      .+|++|||+|++|+.+|.++++  .|.+|+|+|+
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~--~g~~v~lie~   35 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQ--LGLKVACIEA   35 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHh--CCCeEEEEec
Confidence            4799999999999999999999  8999999998

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.10  E-value=9.4e-06  Score=62.45  Aligned_cols=36  Identities=44%  Similarity=0.565  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..++|+|||+|++|+.+|+.|++  .|.+|+|+|+...
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~--~G~~Vtv~e~~~~  227 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLR--KGHDVTIFDANEQ  227 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCC
Confidence            34699999999999999999999  8999999998743

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.09  E-value=5e-06  Score=59.97  Aligned_cols=34  Identities=35%  Similarity=0.486  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ||+|||||++|+++|+.|.+..++.+|+++|+.+
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~   34 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR   34 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            7999999999999999999732499999999974

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>KOG2665|consensus

Probab=98.09  E-value=5.2e-06  Score=59.82  Aligned_cols=53  Identities=26%  Similarity=0.445  Sum_probs=40.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC------CCCCccCcCeeeec
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN------MDTTSDGAAGLFEP   77 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~------~~~~s~~~~g~~~~   77 (90)
                      ...+|++|||+|++|++.|..|.-++++++|.|+|++..      ..++....+|++++
T Consensus        46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~  104 (453)
T KOG2665|consen   46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYK  104 (453)
T ss_pred             cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeC
Confidence            355899999999999999999987668999999998632      23333445555555

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.08  E-value=3.9e-06  Score=64.06  Aligned_cols=43  Identities=23%  Similarity=0.227  Sum_probs=34.1

Q ss_pred             EEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC-CCCCccCcCee
Q psy1704          30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFN-MDTTSDGAAGL   74 (90)
Q Consensus        30 v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~-~~~~s~~~~g~   74 (90)
                      |+|||+|.+|+++|+.+++  .|.+|+|+||... .++.+..++|.
T Consensus         1 VlVVG~G~AGl~AAl~Aae--~G~~VilleK~~~~~~g~s~~a~Gg   44 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAE--LGYHVKLFSYVDAPRRAHSIAAQGG   44 (603)
T ss_pred             CEEECccHHHHHHHHHHHH--cCCCEEEEEecCCCCCccchhhhhh
Confidence            6899999999999999999  8999999999863 33344444443

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK08275 putative oxidoreductase; Provisional

Probab=98.08  E-value=6.6e-06  Score=62.07  Aligned_cols=38  Identities=18%  Similarity=0.347  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ...||+|||+|.+|+++|+.+++..+|.+|+|+||...
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~   45 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV   45 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            34799999999999999999987323789999999865

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.07  E-value=8e-06  Score=60.50  Aligned_cols=39  Identities=13%  Similarity=0.020  Sum_probs=34.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ..+||+|||+|.+|+.+|..|++  .|.+|+++|++...++
T Consensus         3 ~~~DViViGtGL~e~ilAa~Ls~--~GkkVLhlD~n~~yGG   41 (443)
T PTZ00363          3 ETYDVIVCGTGLKECILSGLLSV--NGKKVLHMDRNPYYGG   41 (443)
T ss_pred             CcceEEEECCChHHHHHHhhhhh--CCCEEEEecCCCCcCc
Confidence            45899999999999999999999  8999999999866544

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.07  E-value=5e-06  Score=57.42  Aligned_cols=34  Identities=24%  Similarity=0.216  Sum_probs=28.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~~   63 (90)
                      +|++|||+|.+|..+|.+|++  .+ .+|+|+|+...
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~--~~~~~VlvlEaG~~   35 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSE--AGNKKVLVLEAGPR   35 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTT--STTS-EEEEESSBS
T ss_pred             CCEEEECcCHHHHHHHHHHhh--CCCCcEEEEEcccc
Confidence            489999999999999999998  55 69999999754

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.07  E-value=1e-05  Score=59.58  Aligned_cols=36  Identities=39%  Similarity=0.597  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..++|+|||+|++|+.+|..|++  .+.+|+|+|+...
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~--~g~~V~lie~~~~  174 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLAR--KGYDVTIFEARDK  174 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCC
Confidence            34699999999999999999999  8999999998743

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.07  E-value=7e-06  Score=65.74  Aligned_cols=35  Identities=29%  Similarity=0.373  Sum_probs=32.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...++|+|||+|++|+.+|+.|++  .|.+|+++|+.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~--~Gh~Vtv~E~~  415 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLR--SGHNVTAIDGL  415 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHh--CCCeEEEEccc
Confidence            356799999999999999999999  89999999985

>KOG1276|consensus

Probab=98.07  E-value=7.5e-06  Score=60.55  Aligned_cols=38  Identities=34%  Similarity=0.480  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      +..+++|+|||++||++||+|+++.+...|+++|+.++
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~R   47 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPR   47 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCc
Confidence            45699999999999999999999766677888998744

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.06  E-value=7.4e-06  Score=65.56  Aligned_cols=36  Identities=28%  Similarity=0.470  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      .+||+|||+|++||++|+.+++  .|.+|+|+|++...
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar--~G~~V~liD~~~~~  198 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAAR--AGARVILVDEQPEA  198 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCC
Confidence            4799999999999999999999  89999999987543

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.06  E-value=9.6e-06  Score=59.72  Aligned_cols=33  Identities=24%  Similarity=0.383  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      +++|||+|++|+.+|..+++  .|.+|+|+|++..
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~--~g~~V~lie~~~~   34 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQ--NGKNVTLIDEADL   34 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHh--CCCcEEEEECCcc
Confidence            79999999999999999999  8999999998743

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.05  E-value=1.4e-05  Score=56.94  Aligned_cols=37  Identities=35%  Similarity=0.349  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...+|+|||+|++|+.+|..|++  .+.+|+++|+.+.+
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~   53 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLAC--LGYEVHVYDKLPEP   53 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCC
Confidence            45699999999999999999999  89999999987543

>PLN02507 glutathione reductase

Probab=98.05  E-value=1.2e-05  Score=60.08  Aligned_cols=33  Identities=18%  Similarity=0.168  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD   60 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~   60 (90)
                      .++|++|||+|++|+.+|..+.+  .|.+|+|+|+
T Consensus        24 ~~yDvvVIG~GpaG~~aA~~a~~--~G~~V~liE~   56 (499)
T PLN02507         24 YDFDLFVIGAGSGGVRAARFSAN--FGAKVGICEL   56 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHH--CCCeEEEEec
Confidence            35799999999999999999999  8999999997

>KOG2960|consensus

Probab=98.04  E-value=2.1e-07  Score=63.84  Aligned_cols=50  Identities=28%  Similarity=0.386  Sum_probs=43.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      .||+|||+|-+||++||.+.++.++++|.+||+.-.|++..|..+-++..
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSA  126 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSA  126 (328)
T ss_pred             cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhh
Confidence            59999999999999999998766899999999988888877877666544

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.04  E-value=9.8e-06  Score=59.99  Aligned_cols=41  Identities=29%  Similarity=0.499  Sum_probs=35.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTT   67 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~   67 (90)
                      ....||+|||+|.+||.+|+.|.+  .|++|+|+|.+...++.
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~k--aG~~v~ilEar~r~GGR   45 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKK--AGYQVQILEARDRVGGR   45 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhh--cCcEEEEEeccCCcCce
Confidence            345799999999999999999999  99999999988765543

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.03  E-value=8.5e-06  Score=62.52  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+||+|||||++|+.+|+.+++  .|.+|+++|+.
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR--~G~kV~LiE~~   36 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAAR--MGAKTLLLTHN   36 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHH--cCCcEEEEecc
Confidence            35799999999999999999999  89999999986

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.03  E-value=1.7e-05  Score=60.86  Aligned_cols=36  Identities=36%  Similarity=0.458  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ...+|+|||+|++||.+|..|++  .|.+|+|+|+.+.
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~~  344 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHPE  344 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCCC
Confidence            45799999999999999999999  8999999998753

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.03  E-value=1.6e-05  Score=45.45  Aligned_cols=34  Identities=29%  Similarity=0.501  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      +++|||+|+.|+.+|..|.+  .+.+|+++++.+..
T Consensus         1 ~vvViGgG~ig~E~A~~l~~--~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAE--LGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--TTSEEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHH--hCcEEEEEeccchh
Confidence            58999999999999999999  89999999987544

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.02  E-value=1.1e-05  Score=59.53  Aligned_cols=34  Identities=26%  Similarity=0.479  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|++|||+|.+|+.+|+.+++  .|.+|+++|+..
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~--~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAE--AGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHH--CCCcEEEEECCC
Confidence            4799999999999999999999  899999999864

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.02  E-value=1.9e-05  Score=58.57  Aligned_cols=36  Identities=33%  Similarity=0.473  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ...+++|||+|++|+.+|..|++  .|.+|+++|+.+.
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~--~G~~V~i~e~~~~  175 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILAR--AGVQVVVFDRHPE  175 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCC
Confidence            45799999999999999999999  7999999998743

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG2415|consensus

Probab=98.02  E-value=1.1e-05  Score=60.06  Aligned_cols=51  Identities=27%  Similarity=0.404  Sum_probs=38.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhh----CCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRR----FPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~----~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ...||+|||+|++||++|++|.|.    ...++|+|+||....++. ..++.++.|
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Ggh-tlSGaviep  129 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGH-TLSGAVIEP  129 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCc-eecceeecc
Confidence            447999999999999999999763    246789999998655553 334555555

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.02  E-value=1e-05  Score=63.25  Aligned_cols=35  Identities=29%  Similarity=0.391  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      +|+|||||++|+++|+.|++..+|++|+|+|+...
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            79999999999999999998433899999999753

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.01  E-value=1.2e-05  Score=58.60  Aligned_cols=35  Identities=26%  Similarity=0.326  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      +++|||+|++|+.+|..|++..++.+|+|||+++.
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~   36 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI   36 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence            79999999999999999988444569999999754

>PLN02487 zeta-carotene desaturase

Probab=97.99  E-value=1.4e-05  Score=60.91  Aligned_cols=36  Identities=39%  Similarity=0.573  Sum_probs=32.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      .+|+|||+|++|+++|+.|.+  .|.+|+|+|+.+..+
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~--~g~~v~i~E~~~~~g  111 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLD--QGHEVDIYESRPFIG  111 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCeeEEEecCCCCC
Confidence            599999999999999999999  899999999986554

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.98  E-value=2.1e-05  Score=59.40  Aligned_cols=36  Identities=33%  Similarity=0.516  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ...+|+|||+|++||.+|..|++  .|.+|+++|+...
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~~~  171 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAGPK  171 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCC
Confidence            45699999999999999999999  7999999998743

>PRK14727 putative mercuric reductase; Provisional

Probab=97.97  E-value=2e-05  Score=58.48  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|++|||+|++|+.+|..+++  .|.+|+++|+..
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~--~g~~v~~ie~~~   49 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAE--HGARVTIIEGAD   49 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccC
Confidence            45799999999999999999999  899999999863

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.97  E-value=1.4e-05  Score=59.80  Aligned_cols=34  Identities=21%  Similarity=0.389  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+|++|||||++|+.+|.++++  .|++++|+++.
T Consensus       210 ~~~dvvIIGgGpaGl~aA~~la~--~G~~v~li~~~  243 (517)
T PRK15317        210 DPYDVLVVGGGPAGAAAAIYAAR--KGIRTGIVAER  243 (517)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecC
Confidence            45799999999999999999999  89999999864

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.97  E-value=1.3e-05  Score=59.90  Aligned_cols=34  Identities=21%  Similarity=0.387  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+|++|||||++|+++|..+++  .|.+|+|+++.
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~--~G~~v~li~~~  244 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAAR--KGLRTAMVAER  244 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecC
Confidence            45799999999999999999999  89999999753

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.97  E-value=1.3e-05  Score=59.35  Aligned_cols=33  Identities=21%  Similarity=0.388  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      +|+|||||.+|+.+|+.|++  .|.+|+|+|+.+.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr--~G~~V~LiE~rp~   34 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQ--AGVPVILYEMRPE   34 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHh--CCCcEEEEecccc
Confidence            79999999999999999999  8999999997643

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.95  E-value=1.5e-05  Score=59.61  Aligned_cols=33  Identities=18%  Similarity=0.237  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|++|||+|++|+.+|..+.+  .|.+|+|+|+.
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~--~G~~V~lie~~   37 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAA--HGKKVALFDYV   37 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHh--CCCeEEEEecc
Confidence            4799999999999999999999  89999999973

>KOG0685|consensus

Probab=97.94  E-value=2.3e-05  Score=58.46  Aligned_cols=35  Identities=37%  Similarity=0.563  Sum_probs=29.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+|+|||||++||++|.+|.+. ...+++|+|..
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~-gf~~~~IlEa~   54 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLEN-GFIDVLILEAS   54 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHh-CCceEEEEEec
Confidence            346899999999999999999962 45689999975

>PLN02529 lysine-specific histone demethylase 1

Probab=97.93  E-value=2.4e-05  Score=61.24  Aligned_cols=37  Identities=30%  Similarity=0.425  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...+|+|||+|++|+.+|..|.+  .|.+|+|+|+....
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~--~g~~v~v~E~~~~~  195 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLS--FGFKVVVLEGRNRP  195 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--cCCcEEEEecCccC
Confidence            45799999999999999999999  89999999997543

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.92  E-value=2.2e-05  Score=62.39  Aligned_cols=36  Identities=19%  Similarity=0.335  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+||+|||+|.+|+.+|+.+++  .|.+|+|+||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~--~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAE--HGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHH--CCCeEEEEecccc
Confidence            45799999999999999999998  8999999999864

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.92  E-value=2e-05  Score=57.74  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      +|+|||+|++|+.+|..|++..++.+|+|+|++..
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~   37 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD   37 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            79999999999999999987556789999999743

>PRK02106 choline dehydrogenase; Validated

Probab=97.91  E-value=2.1e-05  Score=59.37  Aligned_cols=36  Identities=25%  Similarity=0.307  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|++|||+|.+|+.+|.+|++. ++.+|+|+|+..
T Consensus         4 ~~~D~iIVG~G~aG~vvA~rLae~-~g~~VlvlEaG~   39 (560)
T PRK02106          4 MEYDYIIIGAGSAGCVLANRLSED-PDVSVLLLEAGG   39 (560)
T ss_pred             CcCcEEEECCcHHHHHHHHHHHhC-CCCeEEEecCCC
Confidence            447999999999999999999983 589999999974

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.88  E-value=1.3e-05  Score=60.26  Aligned_cols=37  Identities=24%  Similarity=0.497  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...+++|||||++|+.+|+.|+.  .|.+|.++||++..
T Consensus       123 v~~svLVIGGGvAGitAAl~La~--~G~~v~LVEKepsi  159 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELAD--MGFKVYLVEKEPSI  159 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHH--cCCeEEEEecCCcc
Confidence            34689999999999999999999  99999999998653

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.88  E-value=2.3e-05  Score=58.04  Aligned_cols=36  Identities=33%  Similarity=0.388  Sum_probs=27.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFNM   64 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~~~   64 (90)
                      ||+|||+|++|..+|..|++..+. .+|+|||+...+
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~   37 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP   37 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence            699999999999999999985544 899999997544

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.88  E-value=3.3e-05  Score=55.80  Aligned_cols=36  Identities=17%  Similarity=0.274  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|+|||+|++|+.+|..|++..+..+|++++++.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~   38 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER   38 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence            358999999999999999999843445899999874

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.87  E-value=1.9e-05  Score=57.39  Aligned_cols=36  Identities=39%  Similarity=0.610  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      ..+|+|||+|++||++|+.|.+   ..+||+||.+...+
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~---rhdVTLfEA~~rlG   43 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSR---RHDVTLFEADRRLG   43 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhc---ccceEEEecccccc
Confidence            4589999999999999999987   56999999875543

>KOG2853|consensus

Probab=97.86  E-value=1.9e-05  Score=57.50  Aligned_cols=60  Identities=22%  Similarity=0.184  Sum_probs=44.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhC--CCCcEEEEccCCC-CCCCccCcCeeeecCCCCCCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKFN-MDTTSDGAAGLFEPSPNFMGP   84 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~--~g~~v~vie~~~~-~~~~s~~~~g~~~~~~~~~~~   84 (90)
                      +.+++|+|||+|..|.++|+.|+++.  .+++|+|+|++.. ...++..+-|.++.++.+.+.
T Consensus        84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEn  146 (509)
T KOG2853|consen   84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPEN  146 (509)
T ss_pred             ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchh
Confidence            45689999999999999999998643  4689999999743 344555566666766655443

>PLN02546 glutathione reductase

Probab=97.86  E-value=3.3e-05  Score=58.67  Aligned_cols=32  Identities=16%  Similarity=0.141  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD   60 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~   60 (90)
                      ++|++|||+|++|..+|..+++  .|.+|+|+|+
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~  110 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASN--FGASAAVCEL  110 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEec
Confidence            4799999999999999999999  8999999996

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.85  E-value=4.2e-05  Score=57.00  Aligned_cols=36  Identities=36%  Similarity=0.515  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ...+++|||+|++|+.+|..|++  .|.+|+|+|+.+.
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~--~g~~V~v~e~~~~  177 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNR--AGHTVTVFEREDR  177 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCC
Confidence            34699999999999999999999  8999999998753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.85  E-value=3.6e-05  Score=56.27  Aligned_cols=38  Identities=24%  Similarity=0.322  Sum_probs=31.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        24 ~~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .....+|+|||+|++|+.+|..|.+  .+.+|+|||+++.
T Consensus         7 ~~~~~~vVIvGgG~aGl~~a~~L~~--~~~~ItlI~~~~~   44 (424)
T PTZ00318          7 RLKKPNVVVLGTGWAGAYFVRNLDP--KKYNITVISPRNH   44 (424)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHhCc--CCCeEEEEcCCCC
Confidence            3455799999999999999998876  6789999998643

>KOG1800|consensus

Probab=97.84  E-value=3.2e-05  Score=56.74  Aligned_cols=37  Identities=32%  Similarity=0.470  Sum_probs=33.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      .+|+|||+|++|+-+|..|.+++++.+|+++|+.+.|
T Consensus        21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP   57 (468)
T KOG1800|consen   21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP   57 (468)
T ss_pred             ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence            4899999999999999999886678999999998654

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.84  E-value=3.4e-05  Score=55.77  Aligned_cols=35  Identities=31%  Similarity=0.529  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +++|++|||||.+|+.|+++|++  .|.++.|+....
T Consensus         1 M~fDv~IIGGGLAGltc~l~l~~--~Gk~c~iv~~gQ   35 (421)
T COG3075           1 MNFDVAIIGGGLAGLTCGLALQQ--AGKRCAIVNRGQ   35 (421)
T ss_pred             CcccEEEEcCcHHHHHHHHHHHh--cCCcEEEEeCCh
Confidence            35799999999999999999999  899999998764

>PLN03000 amine oxidase

Probab=97.82  E-value=4.3e-05  Score=60.70  Aligned_cols=38  Identities=37%  Similarity=0.497  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      ...+|+|||+|++|+.+|..|.+  .|.+|+|+|++...+
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~--~G~~V~VlE~~~riG  220 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMR--FGFKVTVLEGRKRPG  220 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHH--CCCcEEEEEccCcCC
Confidence            34799999999999999999999  899999999976543

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.82  E-value=4.3e-05  Score=54.80  Aligned_cols=35  Identities=14%  Similarity=0.323  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+++|||+|++|+.+|..|++..+..+|+|++++.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~   37 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS   37 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence            48999999999999999998865678999998864

>PRK09897 hypothetical protein; Provisional

Probab=97.81  E-value=4.4e-05  Score=57.81  Aligned_cols=36  Identities=25%  Similarity=0.409  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ++|+|||+|++|+++|..|.+.....+|+|||+...
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~   37 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE   37 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence            489999999999999999987434579999999643

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.80  E-value=5.5e-05  Score=55.94  Aligned_cols=33  Identities=33%  Similarity=0.431  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+++|||+|++|+.+|..+++  .|.+|+++|++.
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~--~g~~v~~~e~~~   34 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQ--LGADVTVIERDG   34 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccC
Confidence            489999999999999999999  899999999874

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.80  E-value=4.6e-05  Score=56.93  Aligned_cols=33  Identities=24%  Similarity=0.333  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCC-CCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~-g~~v~vie~~   61 (90)
                      .+|++|||+|++|..+|..+++  . |.+|+|+|++
T Consensus         3 ~~DviVIG~G~~G~~aA~~aa~--~~g~~V~lie~~   36 (486)
T TIGR01423         3 AFDLVVIGAGSGGLEAGWNAAT--LYKKRVAVIDVQ   36 (486)
T ss_pred             ccCEEEECCChHHHHHHHHHHH--hcCCEEEEEecc
Confidence            4799999999999999999998  6 8999999973

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.79  E-value=4.6e-05  Score=56.73  Aligned_cols=35  Identities=20%  Similarity=0.328  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|++|||+|++|..+|.++++  .|.+|+++|+..
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~--~G~kvalvE~~~   37 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQ--LGLKVALVEKGE   37 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHh--CCCCEEEEeecC
Confidence            45899999999999999999999  888899999974

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.78  E-value=7.5e-05  Score=55.66  Aligned_cols=33  Identities=21%  Similarity=0.289  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|++|||+|++|+.+|..+++  .|.+|+++|+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~--~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAAD--YGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHH--CCCeEEEEecc
Confidence            3699999999999999999999  89999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.77  E-value=6.9e-05  Score=55.83  Aligned_cols=35  Identities=43%  Similarity=0.591  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +..+|+|||+|++||.+|..|.+  .|.+|+++|+..
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~--~G~~Vtv~e~~~  156 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSR--AGHDVTVFERVA  156 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHh--CCCeEEEeCCcC
Confidence            44799999999999999999999  899999999863

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.76  E-value=5.7e-05  Score=57.36  Aligned_cols=36  Identities=22%  Similarity=0.142  Sum_probs=32.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      +|++|||+|++|+.+|+.|.+  .+.+|+++|+....+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~--~g~~v~~~e~~~~~~   36 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVD--AGLKVAMVEIGAADS   36 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHH--CCCeEEEEeccCccC
Confidence            489999999999999999999  899999999976544

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.76  E-value=5.1e-05  Score=58.72  Aligned_cols=33  Identities=21%  Similarity=0.400  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|++|||+|++|..+|..+++  .|.+|+|||++
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~--~G~kV~lie~~  148 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAME--RGLKVIIFTGD  148 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCC
Confidence            4799999999999999999999  89999999964

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.76  E-value=6.2e-05  Score=54.12  Aligned_cols=34  Identities=21%  Similarity=0.263  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      +|++|||+|.+|+.+|..+++  .|.+|.|+||+.-
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~--~gk~VLIvekR~H   35 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQ--LGKRVLIVEKRNH   35 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHH--cCCEEEEEecccc
Confidence            589999999999999998888  8999999999743

>PRK13984 putative oxidoreductase; Provisional

Probab=97.73  E-value=8.5e-05  Score=56.51  Aligned_cols=36  Identities=42%  Similarity=0.472  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ...+++|||+|++|+.+|..|.+  .|.+|+|+|+...
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~--~G~~v~vie~~~~  317 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLAT--MGYEVTVYESLSK  317 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCC
Confidence            45689999999999999999999  8999999998754

>KOG1298|consensus

Probab=97.72  E-value=5.4e-05  Score=55.77  Aligned_cols=34  Identities=32%  Similarity=0.464  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...|++|||+|.+|.+.|+.|.+  .|.+|.|+|++
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~k--dGRrVhVIERD   77 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAK--DGRRVHVIERD   77 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhh--CCcEEEEEecc
Confidence            44699999999999999999999  89999999997

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.70  E-value=5.9e-05  Score=55.27  Aligned_cols=29  Identities=31%  Similarity=0.481  Sum_probs=25.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEc
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIA   59 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie   59 (90)
                      ||+|||||++|+.+|+.+++  .|.+|+++.
T Consensus         1 DViVVGgG~AG~eAA~aaAr--~G~~V~Lit   29 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAAR--MGAKVLLIT   29 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--TT--EEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCCEEEEe
Confidence            79999999999999999999  899999993

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR01810 betA choline dehydrogenase

Probab=97.62  E-value=6.7e-05  Score=56.27  Aligned_cols=32  Identities=25%  Similarity=0.202  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~   62 (90)
                      |++|||+|.+|+.+|.+|++  .+ .+|+|+|+..
T Consensus         1 D~iIVG~G~aG~vvA~rLs~--~~~~~VlvlEaG~   33 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSE--DVSNSVLVLEAGG   33 (532)
T ss_pred             CEEEECCCchHHHHHHHhcc--CCCCeEEEEecCC
Confidence            78999999999999999998  66 6999999974

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.62  E-value=8.3e-05  Score=56.30  Aligned_cols=36  Identities=22%  Similarity=0.208  Sum_probs=32.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+|++|||+|.+|..+|..|..  ++.+|+|+|...
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~--~g~~VllLEaG~   40 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSD--AGLSVLVLEAGG   40 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcC--CCCeEEEEeCCC
Confidence            456899999999999999999997  999999999873

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.59  E-value=0.00014  Score=53.16  Aligned_cols=49  Identities=27%  Similarity=0.343  Sum_probs=38.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC---CCCccCcCeeeec
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM---DTTSDGAAGLFEP   77 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~---~~~s~~~~g~~~~   77 (90)
                      ..|++|||+|.+||.+|..|+.  .|.+|+|+|++...   +.+-|+-+|++--
T Consensus         5 ~~dvivvgaglaglvaa~elA~--aG~~V~ildQEgeqnlGGQAfWSfGGLF~v   56 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELAD--AGKRVLILDQEGEQNLGGQAFWSFGGLFLV   56 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHh--cCceEEEEcccccccccceeeeecccEEEe
Confidence            4699999999999999999999  89999999997432   3444555565533

>KOG4716|consensus

Probab=97.57  E-value=0.00016  Score=52.77  Aligned_cols=51  Identities=24%  Similarity=0.212  Sum_probs=43.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEcc-CCCCCCCccCcCeeeec
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD-KFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~-~~~~~~~s~~~~g~~~~   77 (90)
                      ...+|.+|||+|.+||+||...+.  .|.+|.++|- .+.|.+.+|.-+|....
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~--~G~kV~~lDfV~PtP~GtsWGlGGTCvN   68 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAAD--LGAKVACLDFVKPTPQGTSWGLGGTCVN   68 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHh--cCCcEEEEeecccCCCCCccccCceeee
Confidence            356899999999999999999999  8999999996 46678889988887654

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.57  E-value=7.1e-05  Score=55.27  Aligned_cols=33  Identities=36%  Similarity=0.539  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|++|||+|.+|+.+|+.+.+  .+.+|+++|+..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~--~g~~v~lv~~~~   33 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAE--AGKKCAIIAAGQ   33 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence            489999999999999999998  799999999874

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PLN02976 amine oxidase

Probab=97.56  E-value=0.00016  Score=60.31  Aligned_cols=37  Identities=35%  Similarity=0.566  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      ..+|+|||+|++|+.+|+.|.+  .|.+|+|+|+....+
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~--~G~~V~VlEa~~~vG  729 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQR--QGFSVTVLEARSRIG  729 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHH--CCCcEEEEeeccCCC
Confidence            4689999999999999999999  899999999975543

>PRK07846 mycothione reductase; Reviewed

Probab=97.51  E-value=0.00023  Score=52.58  Aligned_cols=32  Identities=9%  Similarity=0.068  Sum_probs=27.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      +|++|||+|++|..+|..  +  .|.+|+++|++..
T Consensus         2 yD~vVIG~G~~g~~aa~~--~--~G~~V~lie~~~~   33 (451)
T PRK07846          2 YDLIIIGTGSGNSILDER--F--ADKRIAIVEKGTF   33 (451)
T ss_pred             CCEEEECCCHHHHHHHHH--H--CCCeEEEEeCCCC
Confidence            699999999999987754  4  5999999998643

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.51  E-value=0.00021  Score=45.67  Aligned_cols=32  Identities=34%  Similarity=0.481  Sum_probs=27.3

Q ss_pred             EEECCCHHHHHHHHHHHhhC---CCCcEEEEccCC
Q psy1704          31 AILGAGIIGLSTALELQRRF---PNCDVTVIADKF   62 (90)
Q Consensus        31 ~IiG~G~~Gl~~A~~l~~~~---~g~~v~vie~~~   62 (90)
                      +|||+|++|++++..|.+..   ...+|+|||+.+
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~   35 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP   35 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence            59999999999999998752   467999999964

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.50  E-value=0.00013  Score=53.31  Aligned_cols=30  Identities=27%  Similarity=0.566  Sum_probs=27.8

Q ss_pred             EECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          32 ILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        32 IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      |||+|.+|+++|+.+++  .|.+|+|+||...
T Consensus         1 VVG~G~AGl~AA~~Aa~--~Ga~V~vlEK~~~   30 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARR--AGASVLLLEAAPR   30 (432)
T ss_pred             CCcccHHHHHHHHHHHh--CCCcEEEEeCCCC
Confidence            79999999999999999  8999999999764

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.48  E-value=0.00029  Score=52.70  Aligned_cols=51  Identities=16%  Similarity=0.262  Sum_probs=39.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC---CCCccCcCeeeec
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM---DTTSDGAAGLFEP   77 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~---~~~s~~~~g~~~~   77 (90)
                      ..||++||||+.+.++++.|++..+.++|+|+|+-...   ....|.++|.-+.
T Consensus         3 ~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ESS~~wNNAGTGHa   56 (488)
T PF06039_consen    3 EYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALESSNAWNNAGTGHA   56 (488)
T ss_pred             ceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhcCCCccccccchh
Confidence            47999999999999999999987789999999996443   2234555554443

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.46  E-value=0.0002  Score=50.93  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhh-CCCCcEEEEccCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRR-FPNCDVTVIADKFN   63 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~-~~g~~v~vie~~~~   63 (90)
                      +|+|||+|++|+.+|..+.++ .++.+|+|+|++..
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~   36 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST   36 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence            489999999999999999653 25789999998743

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.38  E-value=0.00037  Score=51.37  Aligned_cols=37  Identities=32%  Similarity=0.649  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .++|+|+|||++|+.++..|.++.++.+|+++|++..
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~   39 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY   39 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence            4689999999999999999998422478999999743

>KOG0399|consensus

Probab=97.38  E-value=0.00035  Score=57.34  Aligned_cols=45  Identities=33%  Similarity=0.510  Sum_probs=37.9

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        24 ~~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ..+.++|.|||+|++||.+|-.|.+  .|..|+|+|+.       ...+|++.+
T Consensus      1782 ~rtg~~vaiigsgpaglaaadqlnk--~gh~v~vyer~-------dr~ggll~y 1826 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNK--AGHTVTVYERS-------DRVGGLLMY 1826 (2142)
T ss_pred             cccCcEEEEEccCchhhhHHHHHhh--cCcEEEEEEec-------CCcCceeee
Confidence            3456799999999999999999999  99999999985       445666655

>KOG0042|consensus

Probab=97.35  E-value=8.5e-05  Score=56.56  Aligned_cols=45  Identities=20%  Similarity=0.259  Sum_probs=37.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAA   72 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~   72 (90)
                      ..+||+|||||..|.-||+-.+.  .|+++.++|++.+..++|..+.
T Consensus        66 ~~fDVLIIGGGAtGaGcALDA~T--RGLktaLVE~~DF~SGTSSkST  110 (680)
T KOG0042|consen   66 HEFDVLIIGGGATGAGCALDAAT--RGLKTALVEAGDFASGTSSKST  110 (680)
T ss_pred             CcccEEEECCCccCcceeehhhc--ccceeEEEecccccCCccccch
Confidence            44899999999999999998888  8999999999877666555443

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.34  E-value=0.00035  Score=53.81  Aligned_cols=32  Identities=22%  Similarity=0.365  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|++|||+|++|+.+|..+++  .|.+|+++|+.
T Consensus         1 yDViVIGaG~AGl~aA~ala~--~G~~v~Lie~~   32 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAAR--MGAKTLLLTLN   32 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHH--CCCCEEEEecc
Confidence            489999999999999999999  89999999986

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR03452 mycothione_red mycothione reductase

Probab=97.29  E-value=0.00052  Score=50.66  Aligned_cols=32  Identities=9%  Similarity=0.144  Sum_probs=26.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ++|++|||+|++|..+|.  ++  .|.+|+++|++.
T Consensus         2 ~yD~vvIG~G~~g~~aa~--~~--~g~~V~lie~~~   33 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDP--RF--ADKRIAIVEKGT   33 (452)
T ss_pred             CcCEEEECCCHHHHHHHH--HH--CCCeEEEEeCCC
Confidence            479999999999988754  44  599999999864

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PLN02785 Protein HOTHEAD

Probab=97.28  E-value=0.00051  Score=52.60  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+|++|||+|.+|+.+|.+|.+   +.+|+|+|++..
T Consensus        55 ~yD~IIVG~G~aG~~lA~~Ls~---~~~VLllE~G~~   88 (587)
T PLN02785         55 AYDYIVVGGGTAGCPLAATLSQ---NFSVLLLERGGV   88 (587)
T ss_pred             cCCEEEECcCHHHHHHHHHHhc---CCcEEEEecCCC
Confidence            4899999999999999999998   489999999753

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.12  E-value=0.00097  Score=47.23  Aligned_cols=37  Identities=30%  Similarity=0.405  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      ..+++|+|+|..|+.+|..+++  .|.+|+++|......
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~--~G~~v~l~e~~~~~~  172 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAK--RGKKVTLIEAADRLG  172 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEcccccc
Confidence            3689999999999999999999  899999999976543

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.08  E-value=0.0013  Score=52.32  Aligned_cols=37  Identities=27%  Similarity=0.501  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhC--CCCcEEEEccCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKFNM   64 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~--~g~~v~vie~~~~~   64 (90)
                      .+|+|||+|++|+.+|..|.++.  .+.+|+||++++..
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~   42 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI   42 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence            48999999999999999997642  35799999987543

>KOG1238|consensus

Probab=97.06  E-value=0.00077  Score=51.91  Aligned_cols=39  Identities=23%  Similarity=0.317  Sum_probs=33.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...+|.+|||||.+|+.+|.+|.+. +..+|+|+|++..+
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAGGDP   93 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccC-CCceEEEEecCCCC
Confidence            3568999999999999999999984 56899999997554

>KOG1335|consensus

Probab=96.93  E-value=0.0013  Score=48.69  Aligned_cols=39  Identities=13%  Similarity=0.268  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ...|++|||+|+.|-.+|...+|  .|++.+++|++..-++
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQ--lGlkTacvEkr~~LGG   76 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQ--LGLKTACVEKRGTLGG   76 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHH--hcceeEEEeccCccCc
Confidence            45899999999999999999999  8999999999754433

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.93  E-value=0.002  Score=40.36  Aligned_cols=31  Identities=35%  Similarity=0.505  Sum_probs=28.5

Q ss_pred             EEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        30 v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      |+|+|+|..|...|+.|++  .+.+|+++.+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHH--CCCceEEEEccc
Confidence            6899999999999999999  899999998763

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.91  E-value=0.0022  Score=48.03  Aligned_cols=36  Identities=28%  Similarity=0.401  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~~   63 (90)
                      ++|+|||+|+.|+..|..|.++.+.. .|.|+|+.+.
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~   38 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN   38 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence            58999999999999999998754333 3999999743

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.88  E-value=0.0018  Score=49.54  Aligned_cols=34  Identities=21%  Similarity=0.384  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+||+|||||++|+.+|+..++  .|.+++++..+.
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaAR--mG~ktlLlT~~~   37 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAAR--MGAKTLLLTLNL   37 (621)
T ss_pred             CCceEEECCCccchHHHHhhhc--cCCeEEEEEcCC
Confidence            4799999999999999999999  899999987653

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.82  E-value=0.0025  Score=40.85  Aligned_cols=31  Identities=32%  Similarity=0.432  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|+|+|..|.++|..|.+  .+.+|+++.++
T Consensus         1 KI~ViGaG~~G~AlA~~la~--~g~~V~l~~~~   31 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLAD--NGHEVTLWGRD   31 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--CTEEEEEETSC
T ss_pred             CEEEECcCHHHHHHHHHHHH--cCCEEEEEecc
Confidence            58999999999999999999  89999999876

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=96.82  E-value=0.0019  Score=50.89  Aligned_cols=35  Identities=14%  Similarity=0.291  Sum_probs=29.0

Q ss_pred             EEEECCCHHHHHHHHHHHhhC-CCCcEEEEccCCCC
Q psy1704          30 VAILGAGIIGLSTALELQRRF-PNCDVTVIADKFNM   64 (90)
Q Consensus        30 v~IiG~G~~Gl~~A~~l~~~~-~g~~v~vie~~~~~   64 (90)
                      |+|||+|++|+.+|..|.+.. .+.+|+|||+++.+
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~   36 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP   36 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence            589999999999999987743 45799999987553

>KOG2844|consensus

Probab=96.81  E-value=0.0038  Score=48.94  Aligned_cols=50  Identities=26%  Similarity=0.337  Sum_probs=39.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCc-EEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~-v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ...+++|||+|..|..+++.|++  .|.+ .++.|+...-.+++|.++|++-.
T Consensus        38 ~~A~vvViggG~~g~~~~yhlak--~g~k~avlle~~~ltsgttwhtagl~~~   88 (856)
T KOG2844|consen   38 STADVVVIGGGSLGCSTAYHLAK--RGMKGAVLLERSRLTSGTTWHTAGLLWQ   88 (856)
T ss_pred             CcccEEEEcCCchhHHHHHHHHH--ccccceEEEeeeeeccccccccccceee
Confidence            44799999999999999999999  7888 44555555456678888887655

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.80  E-value=0.0028  Score=41.64  Aligned_cols=31  Identities=35%  Similarity=0.548  Sum_probs=26.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||+|..|...|..+..  .|.+|+++|.+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~   31 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFAR--AGYEVTLYDRS   31 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHH--TTSEEEEE-SS
T ss_pred             CEEEEcCCHHHHHHHHHHHh--CCCcEEEEECC
Confidence            48999999999999999999  89999999976

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.74  E-value=0.0018  Score=42.84  Aligned_cols=31  Identities=29%  Similarity=0.458  Sum_probs=25.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|+|.|+.|+.+|..+++  .|.+|+.+|.+
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~--~G~~V~g~D~~   32 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAE--KGHQVIGVDID   32 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHH--TTSEEEEE-S-
T ss_pred             EEEEECCCcchHHHHHHHHh--CCCEEEEEeCC
Confidence            79999999999999999999  89999999976

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.74  E-value=0.0033  Score=45.45  Aligned_cols=35  Identities=40%  Similarity=0.568  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++|+.+.
T Consensus       144 ~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~  178 (396)
T PRK09754        144 ERSVVIVGAGTIGLELAASATQ--RRCKVTVIELAAT  178 (396)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCc
Confidence            3589999999999999999998  7999999998643

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.73  E-value=0.0034  Score=46.53  Aligned_cols=33  Identities=30%  Similarity=0.460  Sum_probs=29.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+++|+|+|.+|+.+|..|.+  .|.+|+++|+.
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~--~G~~V~~~d~~   48 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLE--LGARVTVVDDG   48 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            3589999999999999999998  89999999965

>KOG4254|consensus

Probab=96.72  E-value=0.0025  Score=47.93  Aligned_cols=37  Identities=24%  Similarity=0.350  Sum_probs=33.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ...+|.+|||+|+-||.+|..|++  -+.+|.++|++..
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r--~g~~V~vlerrhv   48 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLAR--YGQSVAVLERRHV   48 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHh--cCcceEEEEEeee
Confidence            356899999999999999999999  8999999999743

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.70  E-value=0.0031  Score=46.35  Aligned_cols=34  Identities=21%  Similarity=0.251  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      +|+|+|.|.+|+++|..|.+  .|.+|+++|+...+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~--~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKA--QGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHH--CCCEEEEECCCCch
Confidence            68999999999999999999  89999999986543

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=96.64  E-value=0.004  Score=46.08  Aligned_cols=34  Identities=32%  Similarity=0.432  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|++|+.+|..|++  .+.+|+++|+.+
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~--~g~~Vtli~~~~  213 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLAD--FGVEVTVVEAAD  213 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--cCCeEEEEEecC
Confidence            3689999999999999999998  799999999764

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=96.64  E-value=0.0053  Score=43.28  Aligned_cols=33  Identities=27%  Similarity=0.375  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|+|||+|..|...|..|.+  .|.+|+++.++.
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~--~g~~V~~~~r~~   38 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLAR--AGFDVHFLLRSD   38 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHH--CCCeEEEEEeCC
Confidence            479999999999999999999  899999998753

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.64  E-value=0.0046  Score=45.25  Aligned_cols=34  Identities=29%  Similarity=0.397  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|.+|+.+|..+++  .+.+|+++++..
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~--~g~~Vtli~~~~  190 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNK--LGSKVTVLDAAS  190 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence            3589999999999999999998  899999999864

>KOG2404|consensus

Probab=96.60  E-value=0.0038  Score=45.54  Aligned_cols=39  Identities=21%  Similarity=0.322  Sum_probs=31.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCcc
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSD   69 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~   69 (90)
                      .++|||+|.+||+++..+-.  .+-.|+++|+....++.|-
T Consensus        11 pvvVIGgGLAGLsasn~iin--~gg~V~llek~~s~GGNSi   49 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIIN--KGGIVILLEKAGSIGGNSI   49 (477)
T ss_pred             cEEEECCchhhhhhHHHHHh--cCCeEEEEeccCCcCCcce
Confidence            59999999999999999988  5556999999755444333

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.53  E-value=0.0075  Score=40.49  Aligned_cols=36  Identities=25%  Similarity=0.446  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ...+++|||+|.+|..-+..|.+  .|.+|+|++++..
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp~~~   43 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLK--AGAQLRVIAEELE   43 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHH--CCCEEEEEcCCCC
Confidence            34689999999999999999998  8999999987643

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.51  E-value=0.0075  Score=38.91  Aligned_cols=34  Identities=32%  Similarity=0.432  Sum_probs=30.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+++|||||..|..-+..|.+  .|.+|+|++++
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~--~ga~V~VIsp~   45 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKD--TGAFVTVVSPE   45 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCc
Confidence            45789999999999999999988  89999999754

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=96.48  E-value=0.0065  Score=45.42  Aligned_cols=35  Identities=29%  Similarity=0.365  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      +.+++|||+|+.|+..|..+++  -|.+|||+|+...
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~--LG~~VTiie~~~~  207 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAA--LGSKVTVVERGDR  207 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCC
Confidence            4589999999999999999999  8999999998744

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=96.47  E-value=0.0058  Score=44.86  Aligned_cols=34  Identities=29%  Similarity=0.375  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++|+.+
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~  203 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFAS--LGSKVTVIEMLD  203 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCC
Confidence            3589999999999999999998  789999999864

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.44  E-value=0.0065  Score=43.60  Aligned_cols=34  Identities=29%  Similarity=0.561  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++++.+
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~--~g~~Vtlv~~~~  174 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCR--AGKAVTLVDNAA  174 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--cCCeEEEEecCC
Confidence            3589999999999999999998  789999999764

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.44  E-value=0.0072  Score=42.63  Aligned_cols=32  Identities=34%  Similarity=0.368  Sum_probs=29.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|+|+|+|..|...|..|.+  .|.+|+++.+.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~--~G~~V~lv~r~   34 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLAR--AGLPVRLILRD   34 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHh--CCCCeEEEEec
Confidence            379999999999999999999  88999999985

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=96.43  E-value=0.0069  Score=39.31  Aligned_cols=35  Identities=20%  Similarity=0.365  Sum_probs=28.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+|+|||+|.++.-++..|.+  .+.+|+++-+.+
T Consensus       166 ~~k~V~VVG~G~SA~d~a~~l~~--~g~~V~~~~R~~  200 (203)
T PF13738_consen  166 KGKRVVVVGGGNSAVDIAYALAK--AGKSVTLVTRSP  200 (203)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHTT--TCSEEEEEESS-
T ss_pred             CCCcEEEEcChHHHHHHHHHHHh--hCCEEEEEecCC
Confidence            45799999999999999999999  788999998763

...

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=96.43  E-value=0.0047  Score=43.29  Aligned_cols=28  Identities=32%  Similarity=0.417  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          37 IIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        37 ~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ++||++|+.|++  .|.+|+|+|++...++
T Consensus         1 iaGL~aA~~L~~--~G~~v~vlEa~~r~GG   28 (450)
T PF01593_consen    1 IAGLAAAYYLAK--AGYDVTVLEASDRVGG   28 (450)
T ss_dssp             HHHHHHHHHHHH--TTTEEEEEESSSSSBT
T ss_pred             ChHHHHHHHHHh--CCCCEEEEEcCCCCCc
Confidence            589999999999  8999999999866543

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.43  E-value=0.0068  Score=41.18  Aligned_cols=32  Identities=38%  Similarity=0.517  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +++|+|+|..|...|..|.+  .|.+|+++|+++
T Consensus         2 ~iiIiG~G~vG~~va~~L~~--~g~~Vv~Id~d~   33 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSE--EGHNVVLIDRDE   33 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHh--CCCceEEEEcCH
Confidence            68999999999999999999  899999999874

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.43  E-value=0.0083  Score=41.82  Aligned_cols=32  Identities=28%  Similarity=0.322  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...|..+.+  .|.+|+++|.+
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~--~G~~V~l~d~~   36 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCAL--AGYDVLLNDVS   36 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCC
Confidence            579999999999999999998  89999999975

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.41  E-value=0.0069  Score=42.44  Aligned_cols=33  Identities=30%  Similarity=0.434  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.|||+|..|...|..+..  .|.+|+++|.++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~   38 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCAR--AGVDVLVFETTE   38 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHh--CCCEEEEEECCH
Confidence            479999999999999999998  899999999764

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.37  E-value=0.007  Score=42.62  Aligned_cols=32  Identities=34%  Similarity=0.504  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|.|||+|..|...|..|.+  .|.+|+++|+.+
T Consensus         4 ~V~VIG~G~mG~~iA~~la~--~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFAR--AGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHH--CCCeeEEEeCCH
Confidence            69999999999999999999  899999999863

>TIGR02053 MerA mercuric reductase

Probab=96.37  E-value=0.008  Score=44.30  Aligned_cols=33  Identities=27%  Similarity=0.505  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+++|||+|..|+.+|..|.+  .+.+|+++++.+
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~--~g~~Vtli~~~~  199 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFAR--LGSEVTILQRSD  199 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCC
Confidence            689999999999999999998  799999999864

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.37  E-value=0.0078  Score=44.69  Aligned_cols=33  Identities=27%  Similarity=0.454  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+++|||+|..|+.+|..+.+  .|.+|+++|+.+
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~--~G~~Vtlv~~~~  207 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHR--LGSEVDVVEMFD  207 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCCEEEEecCC
Confidence            589999999999999999998  899999999764

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.35  E-value=0.0044  Score=45.19  Aligned_cols=33  Identities=18%  Similarity=0.400  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..|.|||+|.+|..+|+.+++  .|..|.++|=++
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~--~Gv~V~L~EMRp   36 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAK--RGVPVILYEMRP   36 (439)
T ss_pred             CceEEEcccccccHHHHHHHH--cCCcEEEEEccc
Confidence            468999999999999999999  899999999653

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.35  E-value=0.0084  Score=44.12  Aligned_cols=34  Identities=21%  Similarity=0.387  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+++|||+|..|+.+|..+.+  .|.+|+++++.+.
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~  206 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYAS--LGAEVTIVEALPR  206 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCC
Confidence            589999999999999999998  7999999998643

>PRK07846 mycothione reductase; Reviewed

Probab=96.34  E-value=0.0088  Score=44.24  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..+.+  .|.+|+++++.+
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~~  199 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSA--LGVRVTVVNRSG  199 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCC
Confidence            3689999999999999999998  899999999864

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=96.34  E-value=0.0091  Score=44.09  Aligned_cols=33  Identities=27%  Similarity=0.362  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+++|||+|++|+.+|..+.+  .+.+|+++++.+
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~  203 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSR--LGTKVTIVEMAP  203 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence            589999999999999999988  789999999764

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.32  E-value=0.0094  Score=44.18  Aligned_cols=34  Identities=29%  Similarity=0.440  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+..|..+.+  .|.+|+++|+.+
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~--~G~~Vtlie~~~  207 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRR--LGAQVTVVEYLD  207 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCC
Confidence            4689999999999999999998  799999999754

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=96.32  E-value=0.0087  Score=42.35  Aligned_cols=32  Identities=34%  Similarity=0.515  Sum_probs=29.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...|..|.+  .|.+|+++++.
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~--~G~~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAA--AGADVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHh--cCCcEEEEecH
Confidence            379999999999999999999  89999999975

>KOG3855|consensus

Probab=96.31  E-value=0.011  Score=44.10  Aligned_cols=39  Identities=23%  Similarity=0.281  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhC--CCCcEEEEccCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKFNMD   65 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~--~g~~v~vie~~~~~~   65 (90)
                      .+||+|+|||++|+..|..|....  ..++|+++|....+.
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~k   76 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPK   76 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCcc
Confidence            579999999999999998887421  357899999764343

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=96.29  E-value=0.01  Score=43.89  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+..|..+.+  .|.+|+++++.+
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~  199 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHG--LGSETHLVIRHE  199 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCC
Confidence            3689999999999999999998  799999999764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.29  E-value=0.0089  Score=41.37  Aligned_cols=31  Identities=45%  Similarity=0.621  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|+|+|+|..|...|..|.+  .|.+|++++++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~--~g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQ--AGHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence            69999999999999999998  78999999874

>KOG2311|consensus

Probab=96.29  E-value=0.0075  Score=45.90  Aligned_cols=35  Identities=20%  Similarity=0.323  Sum_probs=31.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+||+|||||.+|..+|.+.++  .|.+.+++..+
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR--~Ga~TlLlT~~   60 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAAR--LGARTLLLTHN   60 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHh--cCCceEEeecc
Confidence            455799999999999999999999  89999999875

>PRK06370 mercuric reductase; Validated

Probab=96.29  E-value=0.0099  Score=43.87  Aligned_cols=34  Identities=35%  Similarity=0.480  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..+.+  .|.+|+++++.+
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~  204 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRR--FGSEVTVIERGP  204 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCC
Confidence            3689999999999999999998  799999999864

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.29  E-value=0.012  Score=39.46  Aligned_cols=35  Identities=29%  Similarity=0.491  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+++|||+|-.|...+..|.+  .|.+|+|+++..
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~--~ga~V~VIs~~~   43 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLK--YGAHIVVISPEL   43 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEcCCC
Confidence            45689999999999999999988  789999998753

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=96.28  E-value=0.0093  Score=43.43  Aligned_cols=34  Identities=32%  Similarity=0.457  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..|++  .+.+|+++++..
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~  170 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRE--RGKNVTLIHRSE  170 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCcEEEEECCc
Confidence            3589999999999999999998  789999999764

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=96.27  E-value=0.0094  Score=43.80  Aligned_cols=34  Identities=29%  Similarity=0.373  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..+.+  .|.+|+++++.+
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~--~g~~Vtli~~~~  208 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAA--LGVKVTLINTRD  208 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence            3689999999999999999999  899999999864

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.27  E-value=0.0057  Score=36.59  Aligned_cols=34  Identities=26%  Similarity=0.404  Sum_probs=29.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+++|||+|..|..-+..|.+  .|.+|+|+.+.
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~--~gA~v~vis~~   39 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLE--AGAKVTVISPE   39 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCC--CTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEECCc
Confidence            34689999999999999999998  89999999876

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=96.25  E-value=0.012  Score=44.47  Aligned_cols=40  Identities=25%  Similarity=0.396  Sum_probs=32.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhh--CCCCcEEEEccCCCCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRR--FPNCDVTVIADKFNMDTT   67 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~--~~g~~v~vie~~~~~~~~   67 (90)
                      .+.=|||+|+++|++|.+|-+.  -+|.+|+|+|+...++++
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGs   44 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGS   44 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCc
Confidence            4567999999999999999763  267899999997665543

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.22  E-value=0.012  Score=43.16  Aligned_cols=34  Identities=32%  Similarity=0.472  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .++++|+|+|..|+.+|..|.+  .|.+|+++|+..
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~--~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKK--LGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCc
Confidence            4689999999999999999999  899999999863

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=96.22  E-value=0.011  Score=43.44  Aligned_cols=34  Identities=32%  Similarity=0.501  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+..|..+.+  .+.+|+++++.+
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~--~g~~Vtli~~~~  202 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSR--LGVKVTVFERGD  202 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCC
Confidence            3689999999999999999998  799999999864

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=96.22  E-value=0.0098  Score=41.29  Aligned_cols=30  Identities=30%  Similarity=0.485  Sum_probs=28.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD   60 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~   60 (90)
                      +|+|+|+|..|...|..|.+  .|.+|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~--~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLE--AGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHH--CCCceEEEec
Confidence            69999999999999999999  7899999987

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.21  E-value=0.0099  Score=43.69  Aligned_cols=33  Identities=27%  Similarity=0.304  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+++|||+|..|+.+|..|.+  .|.+|+++++.+
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~~  181 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYE--RGLHPTLIHRSD  181 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCcEEEEeccc
Confidence            589999999999999999998  799999999764

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.19  E-value=0.011  Score=41.18  Aligned_cols=31  Identities=26%  Similarity=0.464  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||+|..|...|..+.+  .|.+|+++|.+
T Consensus         3 ~V~VIG~G~mG~~iA~~la~--~G~~V~~~d~~   33 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAV--SGFQTTLVDIK   33 (288)
T ss_pred             EEEEECccHHHHHHHHHHHh--CCCcEEEEeCC
Confidence            69999999999999999998  89999999876

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.16  E-value=0.0095  Score=43.99  Aligned_cols=31  Identities=26%  Similarity=0.474  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|+|.|++||..|..+++  .|.+|+.+|.+
T Consensus         2 kI~viGtGYVGLv~g~~lA~--~GHeVv~vDid   32 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAE--LGHEVVCVDID   32 (414)
T ss_pred             ceEEECCchHHHHHHHHHHH--cCCeEEEEeCC
Confidence            79999999999999999999  89999999976

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.14  E-value=0.013  Score=43.32  Aligned_cols=34  Identities=32%  Similarity=0.406  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..+++  .|.+|+++|+.+
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~--~G~~Vtlv~~~~  205 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKN--YGVDVTIVEFLD  205 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHH--cCCeEEEEecCC
Confidence            3589999999999999999998  799999998753

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.14  E-value=0.012  Score=41.03  Aligned_cols=32  Identities=28%  Similarity=0.436  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...|..+++  .|.+|+++|.+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~   35 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDIS   35 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCC
Confidence            479999999999999999998  89999999875

>TIGR03452 mycothione_red mycothione reductase

Probab=96.13  E-value=0.013  Score=43.36  Aligned_cols=34  Identities=21%  Similarity=0.281  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|+.|+..|..|.+  .|.+|+++++.+
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~  202 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSA--LGTRVTIVNRST  202 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccC
Confidence            3689999999999999999998  789999999864

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>KOG2755|consensus

Probab=96.13  E-value=0.0054  Score=43.43  Aligned_cols=33  Identities=30%  Similarity=0.552  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +.+|||||++|.+||-.|++..+..+|+++...
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitas   33 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITAS   33 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEecc
Confidence            368999999999999999987788899988754

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.07  E-value=0.021  Score=35.67  Aligned_cols=34  Identities=21%  Similarity=0.358  Sum_probs=29.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCc-EEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~-v~vie~~   61 (90)
                      ...+++|+|+|-+|..++..|.+  .|.+ |+|+.+.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~--~g~~~i~i~nRt   45 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAA--LGAKEITIVNRT   45 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHH--TTSSEEEEEESS
T ss_pred             CCCEEEEECCHHHHHHHHHHHHH--cCCCEEEEEECC
Confidence            45699999999999999999998  6775 9999875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=96.06  E-value=0.014  Score=43.39  Aligned_cols=34  Identities=32%  Similarity=0.531  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++.+
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~  216 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRR--LGAEVTILEALP  216 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCC
Confidence            3689999999999999999998  789999999864

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.00  E-value=0.015  Score=40.57  Aligned_cols=33  Identities=24%  Similarity=0.479  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.|||+|..|...|..+.+  .|.+|+++|.++
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~--~G~~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFAR--TGYDVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHh--cCCeEEEEeCCH
Confidence            479999999999999999998  899999999763

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.99  E-value=0.018  Score=38.52  Aligned_cols=34  Identities=26%  Similarity=0.400  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+|+|+|+|..|..+|..|.+  .|. +++++|.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~--~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLAR--AGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHH--cCCCEEEEECCC
Confidence            34689999999999999999999  898 69999986

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.96  E-value=0.014  Score=41.83  Aligned_cols=32  Identities=22%  Similarity=0.280  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...|..++.  .|.+|+++|..
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~--aG~~V~l~D~~   39 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALA--HGLDVVAWDPA   39 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence            579999999999999999998  89999999975

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.95  E-value=0.02  Score=40.15  Aligned_cols=32  Identities=31%  Similarity=0.454  Sum_probs=29.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...|..|.+  .|.+|+++|.+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~--~g~~V~~~d~~   36 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFAR--KGLQVVLIDVM   36 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence            479999999999999999998  78999999864

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.91  E-value=0.017  Score=40.08  Aligned_cols=32  Identities=25%  Similarity=0.407  Sum_probs=29.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...|..+.+  .|.+|+++|.+
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~--~g~~V~~~d~~   35 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAV--AGYDVVMVDIS   35 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHH--CCCceEEEeCC
Confidence            379999999999999999998  78999999864

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.91  E-value=0.022  Score=39.78  Aligned_cols=33  Identities=27%  Similarity=0.355  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.|||+|..|...|..+..  .|.+|+++|.++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~--~G~~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAA--AGMDVWLLDSDP   37 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCH
Confidence            479999999999999999998  899999999753

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.89  E-value=0.017  Score=35.91  Aligned_cols=32  Identities=34%  Similarity=0.601  Sum_probs=28.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      .+|+|+|+|..|..+|..|.+  .|. +++++|.+
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~--~Gv~~i~lvD~d   35 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLAR--SGVGKITLVDDD   35 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHH--HTTSEEEEEESS
T ss_pred             CEEEEECcCHHHHHHHHHHHH--hCCCceeecCCc
Confidence            589999999999999999999  787 69999986

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=95.88  E-value=0.02  Score=41.75  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++..
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~--~g~~Vtli~~~~  182 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKH--LGKNVRIIQLED  182 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--cCCcEEEEeCCc
Confidence            3689999999999999999988  789999998754

>PRK06116 glutathione reductase; Validated

Probab=95.86  E-value=0.021  Score=41.96  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++.+
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~  200 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNG--LGSETHLFVRGD  200 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence            3689999999999999999998  799999999764

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.85  E-value=0.018  Score=42.41  Aligned_cols=33  Identities=24%  Similarity=0.373  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.|||.|..|+..|..|++  .|.+|+++|.++
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~--~G~~V~~~D~~~   36 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFAS--RQKQVIGVDINQ   36 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHh--CCCEEEEEeCCH
Confidence            479999999999999999999  899999999753

>PRK13748 putative mercuric reductase; Provisional

Probab=95.83  E-value=0.018  Score=43.37  Aligned_cols=33  Identities=24%  Similarity=0.506  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++.
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~  302 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFAR--LGSKVTILARS  302 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCEEEEEecC
Confidence            3589999999999999999998  79999999874

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=95.79  E-value=0.023  Score=41.81  Aligned_cols=35  Identities=26%  Similarity=0.214  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++...
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~  200 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRG--LGVQVTLIYRGEL  200 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEeCCC
Confidence            3589999999999999999988  7899999998643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.77  E-value=0.025  Score=36.56  Aligned_cols=34  Identities=26%  Similarity=0.357  Sum_probs=28.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+++|+|+|.+|..++..+..  -|.+++++|..
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~--lGa~v~~~d~~   52 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKG--LGAEVVVPDER   52 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHH--TT-EEEEEESS
T ss_pred             CCeEEEEECCCHHHHHHHHHHhH--CCCEEEeccCC
Confidence            34699999999999999999998  89999999875

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PLN02507 glutathione reductase

Probab=95.77  E-value=0.023  Score=42.67  Aligned_cols=34  Identities=21%  Similarity=0.255  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+..|..+.+  .+.+|+++++.+
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~  236 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRG--MGATVDLFFRKE  236 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEecC
Confidence            3589999999999999999988  799999999864

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.73  E-value=0.022  Score=40.30  Aligned_cols=32  Identities=34%  Similarity=0.514  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCC--CcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPN--CDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g--~~v~vie~~~   62 (90)
                      +|.|||+|.+|..+|+.|.+  .+  .++.++|.+.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~--~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLL--RGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHH--cCCCCEEEEEECCc
Confidence            69999999999999999988  66  4799999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=95.72  E-value=0.03  Score=41.55  Aligned_cols=33  Identities=18%  Similarity=0.375  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+++|||+|..|+.+|..|++  .+.+|+++++.+
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~--~g~~Vtli~~~~  210 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTE--LGVKVTLVSSRD  210 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCC
Confidence            589999999999999999998  799999999754

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=95.71  E-value=0.021  Score=45.21  Aligned_cols=34  Identities=38%  Similarity=0.621  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+++|||+|..|+.+|..|.+  .|.+|+|++..+.
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~--~G~~Vtvv~~~~~  174 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQN--LGMDVSVIHHAPG  174 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHh--cCCeEEEEccCCc
Confidence            579999999999999999999  8999999997643

>PRK14694 putative mercuric reductase; Provisional

Probab=95.70  E-value=0.023  Score=42.10  Aligned_cols=33  Identities=27%  Similarity=0.478  Sum_probs=29.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+++|||+|..|+..|..|.+  .+.+|+++++.
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~--~g~~Vtlv~~~  210 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFAR--LGSRVTVLARS  210 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEECC
Confidence            3589999999999999999998  78999999864

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=95.69  E-value=0.024  Score=40.19  Aligned_cols=32  Identities=28%  Similarity=0.594  Sum_probs=27.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      .+|.|||+|..|..+|+.++.  .+. +|+++|..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~--~g~~~VvlvDi~   34 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAE--KELADLVLLDVV   34 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHH--cCCCeEEEEeCC
Confidence            379999999999999999988  565 89999974

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=95.68  E-value=0.02  Score=43.00  Aligned_cols=34  Identities=29%  Similarity=0.387  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..|++  .+.+|++++...
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~--~g~~Vtli~~~~  385 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAG--IVRHVTVLEFAD  385 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHh--cCcEEEEEEeCC
Confidence            3589999999999999999988  788999998753

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.66  E-value=0.026  Score=41.33  Aligned_cols=33  Identities=27%  Similarity=0.393  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+++|||+|..|+..|..+.+  .+.+|+++++..
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~--~g~~Vtli~~~~  191 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFAN--FGSKVTILEAAS  191 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence            589999999999999999998  799999999764

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.65  E-value=0.012  Score=42.39  Aligned_cols=34  Identities=18%  Similarity=0.171  Sum_probs=24.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .|+++||.|+++|++|..|.+. ...++.++|+.+
T Consensus         3 ~D~igIG~GP~nLslA~~l~~~-~~~~~~f~e~~~   36 (341)
T PF13434_consen    3 YDLIGIGFGPFNLSLAALLEEH-GDLKALFLERRP   36 (341)
T ss_dssp             ESEEEE--SHHHHHHHHHHHHH-H---EEEEES-S
T ss_pred             eeEEEEeeCHHHHHHHHHhhhc-CCCCEEEEecCC
Confidence            5899999999999999999884 258999999864

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.64  E-value=0.024  Score=40.03  Aligned_cols=31  Identities=32%  Similarity=0.535  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||+|..|...|..|.+  .|.+|++++++
T Consensus         2 kI~IiGaGa~G~ala~~L~~--~g~~V~l~~r~   32 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSS--KKISVNLWGRN   32 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHH--CCCeEEEEecC
Confidence            58999999999999999999  88999999875

>PRK14727 putative mercuric reductase; Provisional

Probab=95.64  E-value=0.025  Score=42.10  Aligned_cols=32  Identities=19%  Similarity=0.397  Sum_probs=29.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+++|||+|..|+..|..+.+  .|.+|+++++.
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~--~G~~Vtlv~~~  220 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYAR--LGSRVTILARS  220 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCEEEEEEcC
Confidence            689999999999999999998  79999999864

>PTZ00058 glutathione reductase; Provisional

Probab=95.62  E-value=0.025  Score=43.25  Aligned_cols=34  Identities=18%  Similarity=0.297  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..+.+  .|.+|+++++..
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~--~G~~Vtli~~~~  270 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNR--LGAESYIFARGN  270 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHH--cCCcEEEEEecc
Confidence            4689999999999999999998  799999999864

>PRK10262 thioredoxin reductase; Provisional

Probab=95.58  E-value=0.028  Score=39.40  Aligned_cols=34  Identities=32%  Similarity=0.459  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++++..
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~--~~~~Vtlv~~~~  179 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSN--IASEVHLIHRRD  179 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--hCCEEEEEEECC
Confidence            4689999999999999999998  788999998864

>KOG3851|consensus

Probab=95.57  E-value=0.017  Score=42.19  Aligned_cols=36  Identities=22%  Similarity=0.421  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+++++|||||.+|+..|..+.++.+.-+|.|+|..
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~   73 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA   73 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecch
Confidence            457999999999999999999987766689999975

>KOG0404|consensus

Probab=95.57  E-value=0.039  Score=38.58  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=30.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+++|||+|+++-.+|+++.+  ..++.++||.-
T Consensus         7 h~e~v~IiGSGPAa~tAAiYaar--aelkPllfEG~   40 (322)
T KOG0404|consen    7 HNENVVIIGSGPAAHTAAIYAAR--AELKPLLFEGM   40 (322)
T ss_pred             eeeeEEEEccCchHHHHHHHHhh--cccCceEEeee
Confidence            34589999999999999999999  88999999964

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=95.57  E-value=0.025  Score=41.88  Aligned_cols=33  Identities=18%  Similarity=0.350  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+++|||+|..|+-+|..+.+  .|.+|+++++.
T Consensus       272 gk~VvVIGgG~~a~d~A~~l~~--~G~~Vtlv~~~  304 (449)
T TIGR01316       272 GKSVVVIGGGNTAVDSARTALR--LGAEVHCLYRR  304 (449)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCEEEEEeec
Confidence            3689999999999999999998  78899999875

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PTZ00052 thioredoxin reductase; Provisional

Probab=95.54  E-value=0.027  Score=42.24  Aligned_cols=32  Identities=44%  Similarity=0.439  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+++|||+|..|+..|..|++  .+.+|+++++.
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~  214 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNE--LGFDVTVAVRS  214 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcC
Confidence            589999999999999999998  79999999863

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=95.53  E-value=0.028  Score=42.73  Aligned_cols=34  Identities=29%  Similarity=0.360  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+-+|..|.+  .+.+|+++++.+
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~--~g~~Vtli~~~~  176 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTR--YASKVTVIVREP  176 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHc--cCCEEEEEEeCC
Confidence            4689999999999999999988  789999998764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=95.51  E-value=0.028  Score=42.08  Aligned_cols=32  Identities=31%  Similarity=0.325  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+++|||+|..|+.+|..+++  .|.+|+++++.
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~  212 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAG--IGLDVTVMVRS  212 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHH--hCCcEEEEEec
Confidence            589999999999999999998  78999999864

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=95.51  E-value=0.029  Score=43.74  Aligned_cols=33  Identities=24%  Similarity=0.263  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+++|||+|..|+..|..+.+  .|.+|+++|+.+
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~--~G~eVTLIe~~~  345 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTA--LGSEVVSFEYSP  345 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHh--CCCeEEEEeccC
Confidence            589999999999999999988  789999999764

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.50  E-value=0.032  Score=40.57  Aligned_cols=34  Identities=24%  Similarity=0.391  Sum_probs=29.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+++|+|+|.+|+.++..+..  .|.+|+++|++
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~--lGa~V~v~d~~  199 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANG--LGATVTILDIN  199 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHH--CCCeEEEEECC
Confidence            34689999999999999999998  78899999875

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=95.49  E-value=0.033  Score=37.97  Aligned_cols=34  Identities=32%  Similarity=0.422  Sum_probs=29.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++++.+
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~--~~~~V~~v~~~~  174 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTR--IAKKVTLVHRRD  174 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHh--hcCEEEEEEeCc
Confidence            3589999999999999999988  688999998753

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.48  E-value=0.039  Score=39.08  Aligned_cols=31  Identities=32%  Similarity=0.438  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||+|..|...|..|.+  .|.+|+++++.
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~--~G~~V~~~~r~   36 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAAS--KGVPVRLWARR   36 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHH--CCCeEEEEeCC
Confidence            79999999999999999998  89999999985

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.44  E-value=0.024  Score=41.50  Aligned_cols=32  Identities=31%  Similarity=0.414  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|.|||.|..|+..|..|.+  .|.+|+++|.+.
T Consensus         2 kI~vIGlG~~G~~lA~~La~--~G~~V~~~d~~~   33 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLAD--LGHEVTGVDIDQ   33 (411)
T ss_pred             EEEEECCCchhHHHHHHHHh--cCCeEEEEECCH
Confidence            68999999999999999998  899999999763

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.44  E-value=0.036  Score=39.92  Aligned_cols=35  Identities=29%  Similarity=0.506  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      ...+|+|||+|..|..+|..|.+  .|. +++|+|.+.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~--aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVR--AGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCc
Confidence            44689999999999999999999  887 799999864

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.43  E-value=0.042  Score=34.33  Aligned_cols=31  Identities=32%  Similarity=0.518  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      +|+|+|+|..|..++..|.+  .|. +++++|.+
T Consensus         1 ~VliiG~GglGs~ia~~L~~--~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLAR--SGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCCEEEEEcCC
Confidence            58999999999999999999  787 69999976

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=95.43  E-value=0.03  Score=41.80  Aligned_cols=37  Identities=27%  Similarity=0.246  Sum_probs=27.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ...+|++|+|.|..-..+|..|++  .|.+|+.+|++..
T Consensus         2 ~~~yDviI~GTGl~esila~als~--~GkkVLhiD~n~y   38 (438)
T PF00996_consen    2 DEEYDVIILGTGLTESILAAALSR--SGKKVLHIDRNDY   38 (438)
T ss_dssp             -SBESEEEE--SHHHHHHHHHHHH--TT--EEEE-SSSS
T ss_pred             CccceEEEECCCcHHHHHHHHHHh--cCCEEEecCCCCC
Confidence            356899999999998888888999  8999999999854

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.41  E-value=0.051  Score=38.85  Aligned_cols=33  Identities=27%  Similarity=0.324  Sum_probs=28.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      .+|.|||+|..|..+|+.+..  .++ ++.++|.++
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~--~gl~~i~LvDi~~   40 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVL--KNLGDVVLFDIVK   40 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCCeEEEEeCCC
Confidence            589999999999999999887  675 799999764

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=95.39  E-value=0.03  Score=44.80  Aligned_cols=33  Identities=27%  Similarity=0.415  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+++|||+|..|+.+|..|.+  .|.+|+|++..+
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~--~G~~VtvVe~~~  178 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKN--LGVETHVIEFAP  178 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEeccc
Confidence            579999999999999999999  799999999764

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=95.37  E-value=0.035  Score=38.80  Aligned_cols=31  Identities=45%  Similarity=0.604  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||+|..|...|..|.+  .|.+|++++++
T Consensus         3 kI~iiG~G~mG~~~a~~L~~--~g~~V~~~~r~   33 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLAR--NGHDVTLWARD   33 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCEEEEEECC
Confidence            69999999999999999998  78999999875

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.36  E-value=0.045  Score=32.67  Aligned_cols=31  Identities=39%  Similarity=0.468  Sum_probs=27.0

Q ss_pred             EEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        30 v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ++|+|.|..|..++..|.+  .+.+|+++|+++
T Consensus         1 vvI~G~g~~~~~i~~~L~~--~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKE--GGIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHH--TTSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHh--CCCEEEEEECCc
Confidence            6899999999999999999  677999999873

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.34  E-value=0.04  Score=39.68  Aligned_cols=35  Identities=31%  Similarity=0.558  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      ...+|+|||+|..|..+|..|.+  .|. +++++|.+.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~--aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVR--AGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCc
Confidence            44689999999999999999999  788 899999863

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.32  E-value=0.044  Score=38.44  Aligned_cols=34  Identities=24%  Similarity=0.395  Sum_probs=30.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+|+|+|+|..|..+|..|.+  .|. +++|+|.+
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar--~GVg~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALAR--TGIGAITLIDMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHH--cCCCEEEEEeCC
Confidence            44689999999999999999999  784 79999976

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=95.30  E-value=0.037  Score=41.58  Aligned_cols=34  Identities=29%  Similarity=0.399  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..|..  .+.+|++++..+
T Consensus       351 gk~VvVVGgG~~g~e~A~~L~~--~~~~Vtlv~~~~  384 (517)
T PRK15317        351 GKRVAVIGGGNSGVEAAIDLAG--IVKHVTVLEFAP  384 (517)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--cCCEEEEEEECc
Confidence            3589999999999999999998  788999998764

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.29  E-value=0.045  Score=38.54  Aligned_cols=33  Identities=30%  Similarity=0.294  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.|||+|..|...|..|.+  .|.+|++++++.
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~--~G~~V~~~~r~~   37 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASA--NGHRVRVWSRRS   37 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHH--CCCEEEEEeCCC
Confidence            479999999999999999998  899999998763

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.28  E-value=0.052  Score=34.27  Aligned_cols=33  Identities=36%  Similarity=0.446  Sum_probs=27.9

Q ss_pred             cEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||+ |..|-.+|+.|.+..-..++.++|..
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~   35 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN   35 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence            7999999 99999999999884334479999976

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=95.28  E-value=0.043  Score=39.10  Aligned_cols=33  Identities=27%  Similarity=0.434  Sum_probs=28.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCc-EEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~-v~vie~~   61 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+ |+|+++.
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~--~g~~~Vtvi~~~  205 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVL--LGAEKVYLAYRR  205 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeec
Confidence            3589999999999999999887  6776 9999864

>PRK12831 putative oxidoreductase; Provisional

Probab=95.28  E-value=0.036  Score=41.27  Aligned_cols=33  Identities=24%  Similarity=0.467  Sum_probs=29.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+|+|||+|..|+-+|..+.+  .|.+|+++++.
T Consensus       281 gk~VvVIGgG~va~d~A~~l~r--~Ga~Vtlv~r~  313 (464)
T PRK12831        281 GKKVAVVGGGNVAMDAARTALR--LGAEVHIVYRR  313 (464)
T ss_pred             CCeEEEECCcHHHHHHHHHHHH--cCCEEEEEeec
Confidence            4699999999999999999998  78889999764

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=95.24  E-value=0.062  Score=38.29  Aligned_cols=34  Identities=26%  Similarity=0.423  Sum_probs=28.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~~   62 (90)
                      ..+|.|||+|.+|-.+|+.|..  .+.  ++.++|.+.
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~--~~~~~el~L~D~~~   41 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVN--QGIADELVIIDINK   41 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--cCCCCEEEEEeCCC
Confidence            3599999999999999999988  565  799999753

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.22  E-value=0.044  Score=40.63  Aligned_cols=35  Identities=20%  Similarity=0.216  Sum_probs=30.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+++|+|+|..|+.++..++.  .|.+|+++|.++
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~--~Ga~ViV~d~d~  235 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRG--QGARVIVTEVDP  235 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEECCh
Confidence            45689999999999999999988  788999998753

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.22  E-value=0.042  Score=41.32  Aligned_cols=33  Identities=27%  Similarity=0.480  Sum_probs=27.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||.|..|+.+|..|+++..+.+|+.+|.+
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~   35 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS   35 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence            699999999999999999982225779989865

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.20  E-value=0.015  Score=42.97  Aligned_cols=32  Identities=22%  Similarity=0.349  Sum_probs=26.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEc
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIA   59 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie   59 (90)
                      ..+||+|||+|++|-++|.+.++  +|++.-++-
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaAR--KGiRTGl~a  241 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAAR--KGIRTGLVA  241 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHh--hcchhhhhh
Confidence            45799999999999999999998  787665553

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=95.16  E-value=0.045  Score=41.19  Aligned_cols=32  Identities=31%  Similarity=0.398  Sum_probs=29.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...|..+.+  .|.+|+++|..
T Consensus         5 ~kIavIG~G~MG~~iA~~la~--~G~~V~v~D~~   36 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLL--AGIDVAVFDPH   36 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence            379999999999999999998  89999999975

>PLN02546 glutathione reductase

Probab=95.14  E-value=0.044  Score=41.92  Aligned_cols=34  Identities=32%  Similarity=0.378  Sum_probs=30.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+..|..+.+  .+.+|+++++..
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~--~g~~Vtlv~~~~  285 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNG--LKSDVHVFIRQK  285 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--cCCeEEEEEecc
Confidence            3589999999999999999988  789999999764

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=95.12  E-value=0.05  Score=38.40  Aligned_cols=32  Identities=34%  Similarity=0.418  Sum_probs=27.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCC--CcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPN--CDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g--~~v~vie~~~   62 (90)
                      +|+|||+|.+|..+|+.|..  .+  .+++++|.+.
T Consensus         2 kI~IIGaG~vG~~~a~~l~~--~g~~~ei~l~D~~~   35 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVN--QGIADELVLIDINE   35 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHh--cCCCCEEEEEeCCc
Confidence            69999999999999999988  56  4799999753

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.11  E-value=0.062  Score=38.28  Aligned_cols=36  Identities=17%  Similarity=0.338  Sum_probs=28.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|.|||+|.+|..+|+.|..+....++.++|...
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            458999999999999999998732233699999653

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.09  E-value=0.063  Score=35.81  Aligned_cols=34  Identities=32%  Similarity=0.510  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+|+|+|+|..|..+|..|.+  .|. +++++|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~--~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAG--AGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHH--cCCCeEEEecCC
Confidence            45689999999999999999999  787 79999986

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK06223 malate dehydrogenase; Reviewed

Probab=95.07  E-value=0.055  Score=37.94  Aligned_cols=33  Identities=30%  Similarity=0.361  Sum_probs=28.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      .+|.|||+|..|..+|+.+.+  .+. ++.++|..+
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~--~~~~ev~L~D~~~   36 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLAL--KELGDVVLFDIVE   36 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCeEEEEEECCC
Confidence            489999999999999999988  554 899999753

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.05  E-value=0.059  Score=37.05  Aligned_cols=34  Identities=18%  Similarity=0.310  Sum_probs=30.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+|+|||+|..|..++..|.+  .|. +++++|.+
T Consensus        31 ~~~~VliiG~GglGs~va~~La~--~Gvg~i~lvD~D   65 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAA--AGVGTLTLVDFD   65 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCC
Confidence            45699999999999999999999  787 79999876

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=95.05  E-value=0.059  Score=37.84  Aligned_cols=33  Identities=27%  Similarity=0.291  Sum_probs=28.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ..+++|+|+|-+|.++++.|.+  .|. +|+|+++.
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~--~G~~~I~I~nR~  160 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLT--LGVERLTIFDVD  160 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHH--cCCCEEEEECCC
Confidence            3589999999999999999998  676 79999875

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.04  E-value=0.038  Score=41.42  Aligned_cols=36  Identities=36%  Similarity=0.415  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      .++|+|+|-|..|+++|..|.+  .|.+|+++|.++.+
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~--~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLK--LGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHH--CCCeEEEEcCCCCc
Confidence            4689999999999999999999  89999999976554

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=95.04  E-value=0.042  Score=38.18  Aligned_cols=31  Identities=32%  Similarity=0.523  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||.|..|.+.|..|.+  .|.+|++++++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~--~g~~V~~~d~~   32 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRS--LGHTVYGVSRR   32 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHH--CCCEEEEEECC
Confidence            68999999999999999998  78899999975

>KOG0405|consensus

Probab=95.04  E-value=0.061  Score=39.72  Aligned_cols=35  Identities=17%  Similarity=0.298  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|.++||+|-.|++.|.+.++  .|.++.++|..+
T Consensus        19 k~fDylvIGgGSGGvasARrAa~--~GAkv~l~E~~f   53 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAAS--HGAKVALCELPF   53 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHh--cCceEEEEecCC
Confidence            46899999999999999999999  899999999864

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=95.00  E-value=0.051  Score=40.06  Aligned_cols=32  Identities=28%  Similarity=0.442  Sum_probs=28.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPN-CDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~   61 (90)
                      .+++|+|+|.+|..+|..|++  .+ .+|++.++.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~--~~d~~V~iAdRs   34 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQ--NGDGEVTIADRS   34 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHh--CCCceEEEEeCC
Confidence            479999999999999999998  56 789999986

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.99  E-value=0.067  Score=39.20  Aligned_cols=34  Identities=35%  Similarity=0.385  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|+|+|..|+++|..|.+  .|.+|++.|...
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~--~G~~V~~~d~~~   38 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHK--LGANVTVNDGKP   38 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHH--CCCEEEEEcCCC
Confidence            3578999999999999999999  899999998753

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.98  E-value=0.062  Score=36.91  Aligned_cols=35  Identities=20%  Similarity=0.313  Sum_probs=30.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      ...+|+|+|+|..|..+|..|.+  .|. +++++|.+.
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~--~Gvg~i~lvD~D~   58 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAA--AGVGNLTLLDFDT   58 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHH--cCCCEEEEEeCCc
Confidence            44689999999999999999999  786 799999763

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=94.97  E-value=0.062  Score=36.56  Aligned_cols=34  Identities=29%  Similarity=0.452  Sum_probs=29.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC---cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC---DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~---~v~vie~~   61 (90)
                      ...+++|+|+|-+|..+|..|.+  .|.   +++++|+.
T Consensus        24 ~~~rvlvlGAGgAg~aiA~~L~~--~G~~~~~i~ivdr~   60 (226)
T cd05311          24 EEVKIVINGAGAAGIAIARLLLA--AGAKPENIVVVDSK   60 (226)
T ss_pred             cCCEEEEECchHHHHHHHHHHHH--cCcCcceEEEEeCC
Confidence            34689999999999999999988  676   49999986

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.97  E-value=0.059  Score=40.99  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=29.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+|+|+|+|.+|+.+...++.  .|.+|.++|.++
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~--lGA~V~a~D~~~  198 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGS--LGAIVRAFDTRP  198 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence            35699999999999999988887  788899998763

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=94.96  E-value=0.056  Score=40.57  Aligned_cols=36  Identities=19%  Similarity=0.153  Sum_probs=28.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhh-CCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRR-FPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~-~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..+... ..|.+|+|+++.+
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~  223 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNN  223 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCC
Confidence            36899999999999999766431 1388999999764

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=94.95  E-value=0.068  Score=36.02  Aligned_cols=34  Identities=29%  Similarity=0.461  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+|+|||+|..|..+|..|.+  .|. +++++|.+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~--~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALAR--SGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHH--cCCCeEEEEeCC
Confidence            44689999999999999999999  787 59999986

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=94.95  E-value=0.064  Score=37.87  Aligned_cols=35  Identities=34%  Similarity=0.389  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+++|+|.|.+|..++..|..  .|.+|+++++.+
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~--~Ga~V~v~~r~~  185 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKA--LGANVTVGARKS  185 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEECCH
Confidence            34699999999999999999998  788999998863

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=94.94  E-value=0.068  Score=36.19  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+|+|+|+|..|..+|..|.+  .|. +++++|.+
T Consensus        20 ~~~~VlivG~GglGs~va~~La~--~Gvg~i~lvD~D   54 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAA--AGVGKLGLVDDD   54 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCC
Confidence            44689999999999999999999  787 79999876

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.92  E-value=0.064  Score=34.37  Aligned_cols=32  Identities=28%  Similarity=0.466  Sum_probs=27.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.+||.|..|...|..|.+  .|.+|.++|+.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~--~g~~v~~~d~~   33 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAK--AGYEVTVYDRS   33 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHH--TTTEEEEEESS
T ss_pred             CEEEEEchHHHHHHHHHHHHh--cCCeEEeeccc
Confidence            379999999999999999998  89999999975

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.89  E-value=0.078  Score=35.36  Aligned_cols=34  Identities=24%  Similarity=0.307  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..++++|+|.|-.|..+|..|.+  .|.+|+++|.+
T Consensus        27 ~gk~v~I~G~G~vG~~~A~~L~~--~G~~Vvv~D~~   60 (200)
T cd01075          27 EGKTVAVQGLGKVGYKLAEHLLE--EGAKLIVADIN   60 (200)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCC
Confidence            34689999999999999999999  89999999875

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.87  E-value=0.073  Score=40.28  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.|||+|..|...|..+.+  .|.+|+++|.++
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~--aG~~V~l~D~~~   40 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQ--AGHTVLLYDARA   40 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCH
Confidence            579999999999999999998  899999999764

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=94.85  E-value=0.057  Score=40.88  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.|||+|..|...|..+.+  .|.+|+++|.++
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~--aG~~V~l~d~~~   38 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAAS--AGHQVLLYDIRA   38 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCH
Confidence            479999999999999999999  899999999763

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=94.84  E-value=0.056  Score=38.43  Aligned_cols=31  Identities=39%  Similarity=0.578  Sum_probs=27.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|+|+|+|..|...|+.|.+  .|.+|+++-+.
T Consensus         2 kI~IlGaGAvG~l~g~~L~~--~g~~V~~~~R~   32 (307)
T COG1893           2 KILILGAGAIGSLLGARLAK--AGHDVTLLVRS   32 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHh--CCCeEEEEecH
Confidence            79999999999999999999  77778877664

>PRK08328 hypothetical protein; Provisional

Probab=94.82  E-value=0.074  Score=36.24  Aligned_cols=35  Identities=26%  Similarity=0.412  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      ...+|+|+|+|-.|..++..|.+  .|. +++++|.+.
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~--~Gvg~i~lvD~D~   61 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAA--AGVGRILLIDEQT   61 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCc
Confidence            44689999999999999999999  787 699998753

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.81  E-value=0.088  Score=38.72  Aligned_cols=34  Identities=24%  Similarity=0.408  Sum_probs=30.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|+|.|.+|+++|..|.+  .|.+|+++|...
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~--~g~~v~~~d~~~   38 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRK--NGAEVAAYDAEL   38 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCC
Confidence            3579999999999999999998  899999999754

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=94.81  E-value=0.075  Score=34.69  Aligned_cols=31  Identities=32%  Similarity=0.474  Sum_probs=27.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      +|+|+|+|..|..++..|.+  .|. +++++|.+
T Consensus         1 ~VlViG~GglGs~ia~~La~--~Gvg~i~lvD~D   32 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLAR--SGVGNLKLVDFD   32 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHH--cCCCeEEEEeCC
Confidence            58999999999999999999  788 59999976

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=94.78  E-value=0.059  Score=35.25  Aligned_cols=35  Identities=26%  Similarity=0.336  Sum_probs=27.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+.++|+|-|..|..+|..|+.  .|.+|+|.|.++
T Consensus        22 ~Gk~vvV~GYG~vG~g~A~~lr~--~Ga~V~V~e~DP   56 (162)
T PF00670_consen   22 AGKRVVVIGYGKVGKGIARALRG--LGARVTVTEIDP   56 (162)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHHH--TT-EEEEE-SSH
T ss_pred             CCCEEEEeCCCcccHHHHHHHhh--CCCEEEEEECCh
Confidence            44689999999999999999999  899999999874

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=94.69  E-value=0.12  Score=29.73  Aligned_cols=33  Identities=27%  Similarity=0.347  Sum_probs=28.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCC-CCcEEEEcc
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFP-NCDVTVIAD   60 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~-g~~v~vie~   60 (90)
                      ...+++|+|.|..|..++..|.+  . +.++.++++
T Consensus        22 ~~~~v~i~G~G~~g~~~a~~l~~--~~~~~v~v~~r   55 (86)
T cd05191          22 KGKTVVVLGAGEVGKGIAKLLAD--EGGKKVVLCDR   55 (86)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcC
Confidence            34689999999999999999988  5 568999887

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR00936 ahcY adenosylhomocysteinase

Probab=94.69  E-value=0.075  Score=39.36  Aligned_cols=35  Identities=20%  Similarity=0.216  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+++|+|.|..|..+|..++.  .|.+|+++|.++
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~--~Ga~ViV~d~dp  228 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARG--MGARVIVTEVDP  228 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhh--CcCEEEEEeCCh
Confidence            45689999999999999999988  788999998664

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=94.65  E-value=0.06  Score=42.32  Aligned_cols=33  Identities=27%  Similarity=0.334  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.|||+|..|...|..++.  .|++|+++|.+.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~~  346 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSAS--KGVPVIMKDINQ  346 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHh--CCCeEEEEeCCH
Confidence            579999999999999999998  899999999763

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=94.64  E-value=0.062  Score=37.74  Aligned_cols=31  Identities=29%  Similarity=0.366  Sum_probs=26.8

Q ss_pred             EEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          30 VAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        30 v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      |.|||+|..|..+|+.+..  .++ +|+++|.++
T Consensus         1 I~IIGaG~vG~~ia~~la~--~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLAL--KELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHh--CCCcEEEEEeCCC
Confidence            5799999999999999987  565 999999864

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.64  E-value=0.078  Score=39.74  Aligned_cols=33  Identities=30%  Similarity=0.382  Sum_probs=29.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+++|+|.|.+|++++..|.+  .|.+|++.|..
T Consensus        12 ~~~v~V~G~G~sG~aa~~~L~~--~G~~v~~~D~~   44 (488)
T PRK03369         12 GAPVLVAGAGVTGRAVLAALTR--FGARPTVCDDD   44 (488)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHH--CCCEEEEEcCC
Confidence            3589999999999999998888  79999999964

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.62  E-value=0.076  Score=39.36  Aligned_cols=33  Identities=27%  Similarity=0.361  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+++|+|.|.+|+++|..|.+  .|.+|++.|...
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~--~G~~V~~~D~~~   47 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVK--LGAKVTAFDKKS   47 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHH--CCCEEEEECCCC
Confidence            589999999999999999998  899999999754

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.58  E-value=0.074  Score=39.65  Aligned_cols=33  Identities=18%  Similarity=0.073  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+++|+|.|..|.++|..|.+  .|.+|++.|.+
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~--~g~~v~~~d~~   40 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRA--HLPAQALTLFC   40 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHH--cCCEEEEEcCC
Confidence            3589999999999999999999  89999999964

>PRK04148 hypothetical protein; Provisional

Probab=94.52  E-value=0.046  Score=34.67  Aligned_cols=32  Identities=31%  Similarity=0.365  Sum_probs=28.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .++++||.| .|...|..|++  .|.+|+.+|.++
T Consensus        18 ~kileIG~G-fG~~vA~~L~~--~G~~ViaIDi~~   49 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKE--SGFDVIVIDINE   49 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHH--CCCEEEEEECCH
Confidence            579999999 89888989998  899999999764

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.50  E-value=0.11  Score=34.02  Aligned_cols=35  Identities=31%  Similarity=0.358  Sum_probs=29.8

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGI-IGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..++++|||+|- +|..+|..|.+  .|.+|+++.+..
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~--~g~~V~v~~r~~   78 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLN--RNATVTVCHSKT   78 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhh--CCCEEEEEECCc
Confidence            457999999996 69999999988  788899998763

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=94.49  E-value=0.09  Score=35.01  Aligned_cols=34  Identities=29%  Similarity=0.500  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+|+|||+|..|..++..|.+  .|. +++++|.+
T Consensus        18 ~~s~VlviG~gglGsevak~L~~--~GVg~i~lvD~d   52 (198)
T cd01485          18 RSAKVLIIGAGALGAEIAKNLVL--AGIDSITIVDHR   52 (198)
T ss_pred             hhCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEECC
Confidence            34689999999999999999999  887 59999876

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=94.48  E-value=0.073  Score=39.00  Aligned_cols=30  Identities=33%  Similarity=0.550  Sum_probs=26.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||.|..|+..|..++.   |.+|+++|.+
T Consensus         2 kI~VIGlGyvGl~~A~~lA~---G~~VigvD~d   31 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ---NHEVVALDIL   31 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh---CCcEEEEECC
Confidence            68999999999999976664   7899999975

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=94.48  E-value=0.07  Score=41.98  Aligned_cols=32  Identities=25%  Similarity=0.369  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...|..++.  .|.+|+++|.+
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~  345 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSAS--KGTPIVMKDIN  345 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHh--CCCeEEEEeCC
Confidence            579999999999999999998  89999999975

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=94.48  E-value=0.044  Score=39.30  Aligned_cols=36  Identities=25%  Similarity=0.252  Sum_probs=29.5

Q ss_pred             HHHHHHhhCCCCcEEEEccCC-CCCCCccCcCeeeecCC
Q psy1704          42 TALELQRRFPNCDVTVIADKF-NMDTTSDGAAGLFEPSP   79 (90)
Q Consensus        42 ~A~~l~~~~~g~~v~vie~~~-~~~~~s~~~~g~~~~~~   79 (90)
                      +|+.|++  .|.+|+|+|++. ...++|..++|++.+..
T Consensus         1 ~A~~La~--~G~~V~vlE~~~~~~~gaSg~~~G~l~~~~   37 (381)
T TIGR03197         1 TAYSLAR--RGWQVTLYEQDEAPAQGASGNPQGALYPLL   37 (381)
T ss_pred             ChHHHHh--CCCeeEEEeCCCcccccCCCChhheeeeec
Confidence            4889998  799999999963 45678889999998754

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=94.44  E-value=0.1  Score=35.74  Aligned_cols=33  Identities=33%  Similarity=0.424  Sum_probs=29.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ..+|+|+|.|-.|..++..|.+  .|. +++++|.+
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar--~GVg~i~LvD~D   44 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALAR--SGVGKLTLIDFD   44 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--cCCCEEEEECCC
Confidence            4589999999999999999999  787 79999976

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=94.42  E-value=0.096  Score=36.87  Aligned_cols=35  Identities=26%  Similarity=0.271  Sum_probs=30.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+++|+|.|.+|..+|..|..  .|.+|+++++..
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~--~G~~V~v~~R~~  184 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSA--LGARVFVGARSS  184 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence            34689999999999999999998  788999998863

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=94.42  E-value=0.087  Score=38.92  Aligned_cols=33  Identities=21%  Similarity=0.449  Sum_probs=28.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ..+++|||+|..|+-+|..+.+  .|. +|+++++.
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~--~G~~~Vtlv~~~  306 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKR--LGAESVTIVYRR  306 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCCeEEEeeec
Confidence            4689999999999999999988  676 89999864

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=94.39  E-value=0.12  Score=35.39  Aligned_cols=35  Identities=26%  Similarity=0.500  Sum_probs=29.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+++|||||.++..=+..|.+  .|.+|+|+-...
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~--~gA~VtVVap~i   58 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLK--KGCYVYILSKKF   58 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCCC
Confidence            44689999999999888888888  899999997653

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=94.38  E-value=0.085  Score=38.66  Aligned_cols=35  Identities=31%  Similarity=0.507  Sum_probs=28.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhC------------CCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRF------------PNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~------------~g~~v~vie~~~   62 (90)
                      .+++|||+|+.|+..|..|.+..            .+.+|++++...
T Consensus       174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~  220 (424)
T PTZ00318        174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGS  220 (424)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCC
Confidence            37999999999999999886421            367899999764

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.36  E-value=0.078  Score=40.27  Aligned_cols=34  Identities=18%  Similarity=0.218  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +.+++|+|.|..|...|..|.+  .+.+++++|+++
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~--~g~~vvvId~d~  450 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLA--AGIPLVVIETSR  450 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHH--CCCCEEEEECCH
Confidence            3689999999999999999998  789999999874

>PTZ00117 malate dehydrogenase; Provisional

Probab=94.32  E-value=0.13  Score=36.73  Aligned_cols=34  Identities=32%  Similarity=0.446  Sum_probs=28.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~   62 (90)
                      ..+|.|||+|..|..+|+.+..  .+ .++.++|.+.
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~--~~~~~l~L~Di~~   39 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQ--KNLGDVVLYDVIK   39 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHH--CCCCeEEEEECCC
Confidence            4589999999999999998887  56 4799999754

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=94.29  E-value=0.086  Score=41.46  Aligned_cols=33  Identities=27%  Similarity=0.498  Sum_probs=29.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCc-EEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~-v~vie~~   61 (90)
                      ..+|+|||+|..|+-+|..+.+  .|.+ |+++++.
T Consensus       570 gk~VvVIGgG~~a~d~A~~~~r--~Ga~~Vtlv~r~  603 (752)
T PRK12778        570 GKKVAVVGGGNTAMDSARTAKR--LGAERVTIVYRR  603 (752)
T ss_pred             CCcEEEECCcHHHHHHHHHHHH--cCCCeEEEeeec
Confidence            4689999999999999999988  7876 9999875

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=94.28  E-value=0.12  Score=35.63  Aligned_cols=35  Identities=26%  Similarity=0.409  Sum_probs=30.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+++|+|+|+.+..++..+..  -|.+|+|+|.++
T Consensus        99 p~~~L~IfGaG~va~~la~la~~--lGf~V~v~D~R~  133 (246)
T TIGR02964        99 PAPHVVLFGAGHVGRALVRALAP--LPCRVTWVDSRE  133 (246)
T ss_pred             CCCEEEEECCcHHHHHHHHHHhc--CCCEEEEEeCCc
Confidence            34689999999999999998888  899999999764

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=94.25  E-value=0.086  Score=36.67  Aligned_cols=32  Identities=25%  Similarity=0.442  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|.|||.|..|...|..|.+  .|.+|+++++++
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~--~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAK--AGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHH--CCCeEEEEcCCH
Confidence            48899999999999999998  899999999763

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=94.24  E-value=0.11  Score=38.65  Aligned_cols=35  Identities=23%  Similarity=0.229  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+++|+|.|..|..+|..++.  .|.+|+++|.++
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~--~Ga~ViV~d~dp  245 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRG--LGARVIVTEVDP  245 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCCc
Confidence            45689999999999999999988  788999998764

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.23  E-value=0.1  Score=38.13  Aligned_cols=31  Identities=45%  Similarity=0.627  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +++|+|+|..|..+|..|.+  .+.+|+++|++
T Consensus         2 ~viIiG~G~ig~~~a~~L~~--~g~~v~vid~~   32 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSG--ENNDVTVIDTD   32 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCcEEEEECC
Confidence            69999999999999999998  78999999975

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.20  E-value=0.11  Score=34.60  Aligned_cols=34  Identities=18%  Similarity=0.361  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+|+|+|+|..|..++..|..  .|. +++++|.+
T Consensus        20 ~~s~VlIiG~gglG~evak~La~--~GVg~i~lvD~d   54 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVL--SGIGSLTILDDR   54 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHH--cCCCEEEEEECC
Confidence            44689999999999999999999  887 59999876

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=94.17  E-value=0.093  Score=41.47  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.|||+|..|...|..++.  .|.+|+++|.++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~--~G~~V~l~d~~~  368 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVD--KGLKTVLKDATP  368 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHh--CCCcEEEecCCH
Confidence            579999999999999999998  899999999753

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=94.14  E-value=0.12  Score=35.89  Aligned_cols=31  Identities=26%  Similarity=0.475  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||.|..|...|..+.+  .|.+|++++++
T Consensus         4 ~IgviG~G~mG~~~a~~l~~--~g~~v~~~d~~   34 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLK--AGYSLVVYDRN   34 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHH--CCCeEEEEcCC
Confidence            79999999999999999998  88999999875

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=94.11  E-value=0.13  Score=34.52  Aligned_cols=32  Identities=28%  Similarity=0.466  Sum_probs=27.9

Q ss_pred             cEEEEC-CCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILG-AGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG-~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|.||| +|..|...|..|.+  .|.+|+++++++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~--~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAK--AGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHh--CCCEEEEEEcCH
Confidence            689997 79999999999998  788999997753

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=94.11  E-value=0.13  Score=36.15  Aligned_cols=32  Identities=28%  Similarity=0.481  Sum_probs=27.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC--DVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~   61 (90)
                      .+|+|||.|..|...|..|.+  .+.  +|++++++
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~--~g~~~~V~~~dr~   40 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRR--LGLAGEIVGADRS   40 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHh--cCCCcEEEEEECC
Confidence            479999999999999999988  564  78899875

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.11  E-value=0.12  Score=38.60  Aligned_cols=33  Identities=36%  Similarity=0.573  Sum_probs=29.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+++|+|.|.+|+++|..|.+  .|.+|++.|+.
T Consensus        15 ~~~v~v~G~G~sG~a~a~~L~~--~G~~V~~~D~~   47 (473)
T PRK00141         15 SGRVLVAGAGVSGRGIAAMLSE--LGCDVVVADDN   47 (473)
T ss_pred             CCeEEEEccCHHHHHHHHHHHH--CCCEEEEECCC
Confidence            3579999999999999999998  78899999975

>PRK08223 hypothetical protein; Validated

Probab=94.09  E-value=0.12  Score=36.62  Aligned_cols=35  Identities=31%  Similarity=0.333  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      ...+|+|||+|-.|..++..|++  .|. +++++|.+.
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~--aGVG~i~lvD~D~   61 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLAR--LGIGKFTIADFDV   61 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHH--hCCCeEEEEeCCC
Confidence            45699999999999999999999  787 699999763

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.04  E-value=0.12  Score=37.84  Aligned_cols=34  Identities=29%  Similarity=0.387  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|+|+|..|..++..|.+  .+.+|+++|+++
T Consensus       231 ~~~iiIiG~G~~g~~l~~~L~~--~~~~v~vid~~~  264 (453)
T PRK09496        231 VKRVMIVGGGNIGYYLAKLLEK--EGYSVKLIERDP  264 (453)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence            4689999999999999999988  789999998764

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=94.01  E-value=0.13  Score=39.21  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=29.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|+|+|.+|+.++..+..  .|.+|+++|.+.
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~--lGA~V~v~d~~~  197 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANS--LGAIVRAFDTRP  197 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence            4699999999999999998888  788899998753

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=93.98  E-value=0.14  Score=36.49  Aligned_cols=31  Identities=19%  Similarity=0.309  Sum_probs=26.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNC--DVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~   61 (90)
                      +|.|||+|..|..+|+.|..  .++  ++.++|..
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~--~~~~~elvL~Di~   33 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALA--LGLFSEIVLIDVN   33 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHh--cCCCCEEEEEeCC
Confidence            58999999999999999987  454  69999975

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=93.95  E-value=0.098  Score=41.08  Aligned_cols=32  Identities=25%  Similarity=0.392  Sum_probs=29.0

Q ss_pred             CcEEEECCCHHHHHHHHHHH-hhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQ-RRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~-~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...|..++ .  .|.+|+++|..
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~--~G~~V~l~d~~  342 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATK--AGLPVRIKDIN  342 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHH--cCCeEEEEeCC
Confidence            57999999999999999888 6  79999999975

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=93.95  E-value=0.16  Score=35.71  Aligned_cols=33  Identities=18%  Similarity=0.319  Sum_probs=28.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCc-EEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~-v~vie~~   61 (90)
                      ...++|+|+|-+|.++++.|.+  .|.+ |+|++++
T Consensus       126 ~k~vlI~GAGGagrAia~~La~--~G~~~V~I~~R~  159 (289)
T PRK12548        126 GKKLTVIGAGGAATAIQVQCAL--DGAKEITIFNIK  159 (289)
T ss_pred             CCEEEEECCcHHHHHHHHHHHH--CCCCEEEEEeCC
Confidence            4578999999999999999988  7876 9999875

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=93.88  E-value=0.095  Score=38.14  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=30.2

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILG-AGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG-~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+|+||| .|..|-+.|..|.+  .|.+|+++++.
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~--~G~~V~~~d~~  131 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTL--SGYQVRILEQD  131 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHH--CCCeEEEeCCC
Confidence            446899999 89999999999999  89999999975

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=93.87  E-value=0.15  Score=35.25  Aligned_cols=33  Identities=33%  Similarity=0.588  Sum_probs=28.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+++|+|+|.+|...+..|.+  .+.+|+++++.
T Consensus       117 ~k~vliiGaGg~g~aia~~L~~--~g~~v~v~~R~  149 (270)
T TIGR00507       117 NQRVLIIGAGGAARAVALPLLK--ADCNVIIANRT  149 (270)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            3579999999999999999998  78899998765

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=93.84  E-value=0.16  Score=35.39  Aligned_cols=33  Identities=24%  Similarity=0.412  Sum_probs=28.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~   61 (90)
                      ..+++|+|+|-+|..++..|.+  .| .+|+|+.+.
T Consensus       123 ~k~vlVlGaGg~a~ai~~aL~~--~g~~~V~v~~R~  156 (278)
T PRK00258        123 GKRILILGAGGAARAVILPLLD--LGVAEITIVNRT  156 (278)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHH--cCCCEEEEEeCC
Confidence            4589999999999999999998  67 689999875

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=93.82  E-value=0.2  Score=31.24  Aligned_cols=33  Identities=27%  Similarity=0.391  Sum_probs=28.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~   61 (90)
                      ..+++|+|+|..|...+..+.+  .+ .+|++++++
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~--~g~~~v~v~~r~   52 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAE--LGAAKIVIVNRT   52 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHH--CCCCEEEEEcCC
Confidence            3589999999999999999988  54 679998875

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.76  E-value=0.13  Score=37.61  Aligned_cols=33  Identities=27%  Similarity=0.391  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|+|+|-|..|.++|..|.+  .|.+|+.+|.+.
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~--~G~~V~g~D~~~   36 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQ--KGVYVIGVDKSL   36 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHH--CCCEEEEEeCCc
Confidence            479999999999999999998  788999999754

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=93.72  E-value=0.16  Score=34.96  Aligned_cols=31  Identities=32%  Similarity=0.365  Sum_probs=27.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      +|+|||+|..|..++..|..  .|. +++++|.+
T Consensus         1 kVlvvG~GGlG~eilk~La~--~Gvg~i~ivD~D   32 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLAL--MGFGQIHVIDMD   32 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCC
Confidence            58999999999999999998  776 69999876

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=93.69  E-value=0.081  Score=33.42  Aligned_cols=31  Identities=26%  Similarity=0.255  Sum_probs=25.9

Q ss_pred             EEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        30 v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ++|+|+|+.+..++.-+..  -|.+|+++|.++
T Consensus         1 L~I~GaG~va~al~~la~~--lg~~v~v~d~r~   31 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAAL--LGFRVTVVDPRP   31 (136)
T ss_dssp             EEEES-STCHHHHHHHHHH--CTEEEEEEES-C
T ss_pred             CEEEeCcHHHHHHHHHHHh--CCCEEEEEcCCc
Confidence            4799999999999998888  899999999874

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=93.68  E-value=0.16  Score=36.84  Aligned_cols=34  Identities=35%  Similarity=0.535  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+|+|||+|-.|..++..|..  .|. +++++|.+
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~--~Gvg~i~lvD~D   61 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAG--AGVGHITIIDDD   61 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCC
Confidence            44689999999999999999999  787 69999976

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=93.66  E-value=0.21  Score=32.71  Aligned_cols=33  Identities=24%  Similarity=0.476  Sum_probs=28.1

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+++|+|+ |..|..++..|.+  .+.+|+++.++
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~--~g~~V~l~~R~   61 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAR--EGARVVLVGRD   61 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH--CCCEEEEEcCC
Confidence            358999997 9999999999988  78899998765

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK08017 oxidoreductase; Provisional

Probab=93.65  E-value=0.19  Score=33.56  Aligned_cols=32  Identities=41%  Similarity=0.498  Sum_probs=27.6

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..++|.|+ |..|..++..|.+  .|.+|++++++
T Consensus         3 k~vlVtGasg~IG~~la~~l~~--~g~~v~~~~r~   35 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKR--RGYRVLAACRK   35 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHH--CCCEEEEEeCC
Confidence            36999998 8999999999998  78888888764

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=93.63  E-value=0.16  Score=37.19  Aligned_cols=34  Identities=26%  Similarity=0.414  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+|+|||+|-.|..+|..|..  .|. +++|+|.+
T Consensus        41 ~~~~VlviG~GGlGs~va~~La~--~Gvg~i~lvD~D   75 (392)
T PRK07878         41 KNARVLVIGAGGLGSPTLLYLAA--AGVGTLGIVEFD   75 (392)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHH--cCCCeEEEECCC
Confidence            45699999999999999999999  787 69999976

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=93.63  E-value=0.14  Score=35.86  Aligned_cols=32  Identities=22%  Similarity=0.334  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|.|||.|..|...|..|.+  .|.+|+++++++
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~--~G~~V~v~d~~~   34 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLK--QGHQLQVFDVNP   34 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHH--CCCeEEEEcCCH
Confidence            69999999999999999998  889999998763

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.60  E-value=0.2  Score=36.92  Aligned_cols=35  Identities=26%  Similarity=0.302  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...-++|+|.|.+|+++|..|.+  .|.+|++.|...
T Consensus         5 ~~~~~~v~G~G~sG~s~a~~L~~--~G~~v~~~D~~~   39 (448)
T PRK03803          5 SDGLHIVVGLGKTGLSVVRFLAR--QGIPFAVMDSRE   39 (448)
T ss_pred             cCCeEEEEeecHhHHHHHHHHHh--CCCeEEEEeCCC
Confidence            44679999999999999999998  899999999753

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=93.59  E-value=0.14  Score=40.26  Aligned_cols=33  Identities=27%  Similarity=0.328  Sum_probs=28.8

Q ss_pred             CcEEEECCCHHHHHHHHHHH-hhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQ-RRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~-~~~~g~~v~vie~~~   62 (90)
                      .+|.|||+|..|...|..++ +  .|.+|+++|.++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~--~G~~V~l~d~~~  338 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATK--AGIPVRIKDINP  338 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHH--cCCeEEEEeCCH
Confidence            57999999999999998876 5  699999999763

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=93.58  E-value=0.18  Score=36.86  Aligned_cols=34  Identities=29%  Similarity=0.512  Sum_probs=30.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+|+|||+|..|..++..|.+  .|. +++++|.+
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~--~Gvg~i~ivD~D   74 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLAS--AGVGTITLIDDD   74 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEeCC
Confidence            45689999999999999999999  786 79999976

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=93.58  E-value=0.18  Score=34.53  Aligned_cols=32  Identities=19%  Similarity=0.264  Sum_probs=27.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCC---CcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPN---CDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g---~~v~vie~~   61 (90)
                      .++.|||+|..|...+..+.+  .+   .+|.+++++
T Consensus         3 m~I~iIG~G~mG~~la~~l~~--~g~~~~~v~v~~r~   37 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLA--SGVPAKDIIVSDPS   37 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHh--CCCCcceEEEEcCC
Confidence            379999999999999999887  56   578889875

>PRK00536 speE spermidine synthase; Provisional

Probab=93.56  E-value=0.091  Score=36.76  Aligned_cols=32  Identities=16%  Similarity=0.119  Sum_probs=24.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+|+|||||-.|  ++..+.+  ...+|+++|-+
T Consensus        72 ~pk~VLIiGGGDGg--~~REvLk--h~~~v~mVeID  103 (262)
T PRK00536         72 ELKEVLIVDGFDLE--LAHQLFK--YDTHVDFVQAD  103 (262)
T ss_pred             CCCeEEEEcCCchH--HHHHHHC--cCCeeEEEECC
Confidence            34699999999876  6677777  33489999864

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=93.55  E-value=0.21  Score=28.80  Aligned_cols=31  Identities=29%  Similarity=0.501  Sum_probs=26.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCC---CcEEEE-ccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPN---CDVTVI-ADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g---~~v~vi-e~~   61 (90)
                      +|.|||+|-.|...+..+.+  .+   .+|.++ +++
T Consensus         1 kI~iIG~G~mg~al~~~l~~--~g~~~~~v~~~~~r~   35 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLA--SGIKPHEVIIVSSRS   35 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHH--TTS-GGEEEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCCceeEEeeccCc
Confidence            58899999999999999988  67   788866 654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=93.51  E-value=0.26  Score=35.50  Aligned_cols=34  Identities=24%  Similarity=0.258  Sum_probs=30.0

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..++|+|.|+ |..|..++..|.+  .|.+|+.+++.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~--~G~~V~~v~r~   54 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKA--EGHYIIASDWK   54 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHh--CCCEEEEEEec
Confidence            4468999998 9999999999998  78999999864

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=93.46  E-value=0.16  Score=37.61  Aligned_cols=33  Identities=27%  Similarity=0.243  Sum_probs=29.4

Q ss_pred             CcEEEECCCHHHHH-HHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLS-TALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~-~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+++|+|.|-+|++ +|..|.+  .|.+|++.|...
T Consensus         8 ~~v~viG~G~sG~s~~a~~L~~--~G~~V~~~D~~~   41 (461)
T PRK00421          8 KRIHFVGIGGIGMSGLAEVLLN--LGYKVSGSDLKE   41 (461)
T ss_pred             CEEEEEEEchhhHHHHHHHHHh--CCCeEEEECCCC
Confidence            57999999999999 6888988  899999999754

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=93.42  E-value=0.19  Score=35.73  Aligned_cols=31  Identities=26%  Similarity=0.407  Sum_probs=27.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      +|+|||+|..|..++..|..  .|. +++|+|.+
T Consensus         1 kVlVVGaGGlG~eilknLal--~Gvg~I~IvD~D   32 (291)
T cd01488           1 KILVIGAGGLGCELLKNLAL--SGFRNIHVIDMD   32 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHH--cCCCeEEEECCC
Confidence            58999999999999999999  776 69999875

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=93.41  E-value=0.18  Score=36.16  Aligned_cols=31  Identities=29%  Similarity=0.418  Sum_probs=28.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      +|+|+|+|-.|..+|..|..  .|. +++++|.+
T Consensus         1 kVLIvGaGGLGs~vA~~La~--aGVg~ItlvD~D   32 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLG--WGVRHITFVDSG   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHH--cCCCeEEEECCC
Confidence            58999999999999999999  787 79999975

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=93.35  E-value=0.22  Score=34.56  Aligned_cols=36  Identities=31%  Similarity=0.318  Sum_probs=28.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhC---------CCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRF---------PNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~---------~g~~v~vie~~   61 (90)
                      ...+|+|||+|..|..++..|++..         .|.+++|+|.+
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D   54 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD   54 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence            3468999999999999999998721         13489999976

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK07411 hypothetical protein; Validated

Probab=93.31  E-value=0.19  Score=36.88  Aligned_cols=34  Identities=18%  Similarity=0.249  Sum_probs=30.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+|+|||+|-.|..+|..|..  .|. +++++|.+
T Consensus        37 ~~~~VlivG~GGlG~~va~~La~--~Gvg~l~lvD~D   71 (390)
T PRK07411         37 KAASVLCIGTGGLGSPLLLYLAA--AGIGRIGIVDFD   71 (390)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHH--cCCCEEEEECCC
Confidence            44699999999999999999999  787 69999976

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=93.30  E-value=0.22  Score=35.02  Aligned_cols=33  Identities=24%  Similarity=0.253  Sum_probs=28.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      .++++|+|+|-++.++++.|.+  .|. +++|+++.
T Consensus       127 ~k~vlilGaGGaarAi~~aL~~--~g~~~i~i~nR~  160 (283)
T PRK14027        127 LDSVVQVGAGGVGNAVAYALVT--HGVQKLQVADLD  160 (283)
T ss_pred             CCeEEEECCcHHHHHHHHHHHH--CCCCEEEEEcCC
Confidence            3579999999999999999998  665 68899864

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=93.29  E-value=0.21  Score=34.95  Aligned_cols=33  Identities=24%  Similarity=0.350  Sum_probs=28.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ..+++|+|+|-++.++++.|.+  .|. +|+|+.+.
T Consensus       125 ~k~vlvlGaGGaarai~~aL~~--~G~~~i~I~nRt  158 (282)
T TIGR01809       125 GFRGLVIGAGGTSRAAVYALAS--LGVTDITVINRN  158 (282)
T ss_pred             CceEEEEcCcHHHHHHHHHHHH--cCCCeEEEEeCC
Confidence            4589999999999999999998  675 69999875

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=93.24  E-value=0.16  Score=37.81  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..++|+|||+|.+|..++..|.+  .+.+|+++-+.+
T Consensus       174 ~GKrV~VIG~GaSA~di~~~l~~--~ga~vt~~qRs~  208 (443)
T COG2072         174 RGKRVLVIGAGASAVDIAPELAE--VGASVTLSQRSP  208 (443)
T ss_pred             CCCeEEEECCCccHHHHHHHHHh--cCCeeEEEecCC
Confidence            45799999999999999999999  789999998764

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=93.22  E-value=0.26  Score=33.40  Aligned_cols=35  Identities=34%  Similarity=0.575  Sum_probs=30.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+++|||||-.|..=+..+.+  .|.+|+|+-++.
T Consensus        11 ~~k~VlvvGgG~va~rKa~~ll~--~ga~v~Vvs~~~   45 (210)
T COG1648          11 EGKKVLVVGGGSVALRKARLLLK--AGADVTVVSPEF   45 (210)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--cCCEEEEEcCCc
Confidence            45689999999999999998988  899999998764

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=93.21  E-value=0.15  Score=36.49  Aligned_cols=32  Identities=31%  Similarity=0.468  Sum_probs=29.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .++.|||+|..|-..|..++.  .|++|+++|.+
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~--~G~~V~l~D~~   35 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFAL--AGYDVVLKDIS   35 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhh--cCCceEEEeCC
Confidence            479999999999999999998  78999999976

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=93.20  E-value=0.18  Score=35.35  Aligned_cols=32  Identities=16%  Similarity=0.303  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|.|||.|..|...|..|.+  .|.+|.+++++.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~--~g~~V~~~dr~~   33 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAK--RGHDCVGYDHDQ   33 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHH--CCCEEEEEECCH
Confidence            68999999999999999999  899999998763

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK07060 short chain dehydrogenase; Provisional

Probab=93.19  E-value=0.34  Score=32.02  Aligned_cols=33  Identities=27%  Similarity=0.343  Sum_probs=28.1

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...++|.|+ |..|..++..+.+  .|.+|+++.+.
T Consensus         9 ~~~~lItGa~g~iG~~~a~~l~~--~g~~V~~~~r~   42 (245)
T PRK07060          9 GKSVLVTGASSGIGRACAVALAQ--RGARVVAAARN   42 (245)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHH--CCCEEEEEeCC
Confidence            457999998 6889999999998  78899988764

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=93.18  E-value=0.21  Score=35.31  Aligned_cols=32  Identities=34%  Similarity=0.614  Sum_probs=26.6

Q ss_pred             EEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          30 VAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        30 v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ++|||+|.+|+.+|..+.+..+..+++++..+
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~   32 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGRE   32 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence            58999999999999998875567788877665

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=93.18  E-value=0.2  Score=36.40  Aligned_cols=34  Identities=24%  Similarity=0.423  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+|+|+|+|-.|..++..|.+  .|. +++++|.+
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~--~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAA--AGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCC
Confidence            45689999999999999999999  787 69999976

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=93.16  E-value=0.19  Score=36.02  Aligned_cols=31  Identities=29%  Similarity=0.386  Sum_probs=27.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      +|+|||+|..|..++..|..  .|. +++|+|.+
T Consensus         1 kVlIVGaGGlG~EiaKnLal--~Gvg~ItIvD~D   32 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVL--TGFGEIHIIDLD   32 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHH--hcCCeEEEEcCC
Confidence            58999999999999999998  776 79999976

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=93.15  E-value=0.13  Score=38.41  Aligned_cols=34  Identities=15%  Similarity=0.260  Sum_probs=29.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..++|+|||+|.+|+-.|..|.+  ...+|+++.+.
T Consensus       203 ~gk~VvVVG~G~Sg~diA~~L~~--~a~~V~l~~r~  236 (461)
T PLN02172        203 KNEVVVVIGNFASGADISRDIAK--VAKEVHIASRA  236 (461)
T ss_pred             CCCEEEEECCCcCHHHHHHHHHH--hCCeEEEEEee
Confidence            34689999999999999999998  67899998874

>PLN02240 UDP-glucose 4-epimerase

Probab=93.13  E-value=0.27  Score=34.54  Aligned_cols=33  Identities=30%  Similarity=0.472  Sum_probs=28.2

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704          26 SNHKVAILGA-GIIGLSTALELQRRFPNCDVTVIAD   60 (90)
Q Consensus        26 ~~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~   60 (90)
                      +..+++|.|+ |..|..++..|.+  .|.+|+++++
T Consensus         4 ~~~~vlItGatG~iG~~l~~~L~~--~g~~V~~~~~   37 (352)
T PLN02240          4 MGRTILVTGGAGYIGSHTVLQLLL--AGYKVVVIDN   37 (352)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH--CCCEEEEEeC
Confidence            3468999987 8999999999998  7889999875

>PLN02494 adenosylhomocysteinase

Probab=93.10  E-value=0.24  Score=37.54  Aligned_cols=35  Identities=20%  Similarity=0.212  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ....++|+|.|.+|..+|..++.  .|.+|+++|..+
T Consensus       253 aGKtVvViGyG~IGr~vA~~aka--~Ga~VIV~e~dp  287 (477)
T PLN02494        253 AGKVAVICGYGDVGKGCAAAMKA--AGARVIVTEIDP  287 (477)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCc
Confidence            45789999999999999999987  788999998764

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=93.10  E-value=0.23  Score=34.81  Aligned_cols=32  Identities=28%  Similarity=0.354  Sum_probs=27.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      .+++|+|+|-++.++++.|.+  .|. +|+|+.+.
T Consensus       123 ~~vlilGaGGaarAi~~aL~~--~g~~~i~i~nR~  155 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRD--AGFTDGTIVARN  155 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHH--CCCCEEEEEeCC
Confidence            479999999999999999998  676 59999875

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.04  E-value=0.18  Score=37.74  Aligned_cols=33  Identities=27%  Similarity=0.269  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|+|+|.|.+|+++|..|.+  .|.+|++.|...
T Consensus         8 ~~i~v~G~G~sG~s~a~~L~~--~G~~v~~~D~~~   40 (498)
T PRK02006          8 PMVLVLGLGESGLAMARWCAR--HGARLRVADTRE   40 (498)
T ss_pred             CEEEEEeecHhHHHHHHHHHH--CCCEEEEEcCCC
Confidence            479999999999999999998  899999999753

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=93.00  E-value=0.23  Score=36.65  Aligned_cols=34  Identities=24%  Similarity=0.350  Sum_probs=29.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~   61 (90)
                      ...+++|+|+|..|..++..|..  .| .+|+++++.
T Consensus       179 ~~~~VlViGaG~iG~~~a~~L~~--~G~~~V~v~~rs  213 (417)
T TIGR01035       179 KGKKALLIGAGEMGELVAKHLLR--KGVGKILIANRT  213 (417)
T ss_pred             cCCEEEEECChHHHHHHHHHHHH--CCCCEEEEEeCC
Confidence            34689999999999999999988  67 679999875

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	90
1an9_A	340	D-Amino Acid Oxidase Complex With O-Aminobenzoate L		1e-07
1kif_A	347	D-Amino Acid Oxidase From Pig Kidney Length = 347		1e-07
2du8_A	347	Crystal Structure Of Human D-Amino Acid Oxidase Len		2e-07
3g3e_A	351	Crystal Structure Of Human D-Amino Acid Oxidase In		2e-07

>pdb|1AN9|A Chain A, D-Amino Acid Oxidase Complex With O-Aminobenzoate Length = 340

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 4/53 (7%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNC----DVTVIADKFNMDTTSDGAAGLFEP 77
          +V ++GAG+IGLSTAL +  R+ +     DV V AD+F   TT+D AAGL++P
Sbjct: 2  RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQP 54

>pdb|1KIF|A Chain A, D-Amino Acid Oxidase From Pig Kidney Length = 347

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 4/53 (7%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNC----DVTVIADKFNMDTTSDGAAGLFEP 77
          +V ++GAG+IGLSTAL +  R+ +     DV V AD+F   TT+D AAGL++P
Sbjct: 2  RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQP 54

>pdb|2DU8|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase Length = 347

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 4/53 (7%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNC----DVTVIADKFNMDTTSDGAAGLFEP 77
          +V ++GAG+IGLSTAL +  R+ +     D+ V AD+F   TT+D AAGL++P
Sbjct: 2  RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQP 54

>pdb|3G3E|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase In Complex With Hydroxyquinolin-2(1h) Length = 351

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 4/53 (7%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNC----DVTVIADKFNMDTTSDGAAGLFEP 77
          +V ++GAG+IGLSTAL +  R+ +     D+ V AD+F   TT+D AAGL++P
Sbjct: 2  RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQP 54

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	90
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	2e-18
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	9e-18
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	5e-09
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	9e-09
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	5e-08
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	8e-08
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	1e-07
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	1e-07
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	1e-07
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	2e-07
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	3e-07
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	3e-07
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	3e-07
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	5e-07
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	8e-07
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	2e-06
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	3e-06
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	3e-06
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	3e-06
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	3e-06
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	4e-06
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	6e-06
3dme_A	369	Conserved exported protein; structural genomics, P	6e-06
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	6e-06
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	1e-05
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	1e-05
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	2e-05
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	3e-05
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	5e-05
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	5e-05
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	6e-05
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	6e-05
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	8e-05
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	8e-05
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	8e-05
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	1e-04
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	1e-04
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	2e-04
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	2e-04
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	2e-04
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	3e-04
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	3e-04
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	4e-04
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	5e-04
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	6e-04
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	6e-04
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	7e-04
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	7e-04
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	8e-04
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	8e-04

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 76.6 bits (188), Expect = 2e-18
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 23 VMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFM 82
          +M S  +V +LG+G+IGLS+AL L R+     V ++A     D +S   A  +  +    
Sbjct: 2  MMHSQKRVVVLGSGVIGLSSALILARK--GYSVHILARDLPEDVSSQTFASPW--AGANW 57

Query: 83 GPDLETT 89
           P +  T
Sbjct: 58 TPFMTLT 64

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351

 Score = 74.7 bits (183), Expect = 9e-18
 Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 4/55 (7%)

Query: 29 KVAILGAGIIGLSTALELQRRFPN----CDVTVIADKFNMDTTSDGAAGLFEPSP 79
          +V ++GAG+IGLSTAL +  R+ +     D+ V AD+F   TT+D AAGL++P  
Sbjct: 2  RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYL 56

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 50.4 bits (120), Expect = 5e-09
 Identities = 12/33 (36%), Positives = 23/33 (69%)

Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          S+ ++ I+G GI GL+ A   +R FP+ ++T++
Sbjct: 3  SSKRLVIVGGGITGLAAAYYAERAFPDLNITLL 35

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 49.7 bits (118), Expect = 9e-09
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVI--ADKF--NMDTTSDGAAGLFEPSPNFMG 83
            V +LG GI GL+ +  L R      V ++  +++    + +       +FE  P  + 
Sbjct: 3  RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIR 62

Query: 84 P 84
          P
Sbjct: 63 P 63

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 47.0 bits (111), Expect = 8e-08
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 18 PANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
           A      S  +VA++GAG+ GL+ A +L+      +VTV 
Sbjct: 4  SAGEDKHSSAKRVAVIGAGVSGLAAAYKLKI--HGLNVTVF 42

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF---NMDTTSDGAAGLF 75
          +  +  + I+GAG  G STAL L RR    +VTV+ D +   +  +  +    + 
Sbjct: 3  VTKSSSLLIVGAGTWGTSTALHLARR-GYTNVTVL-DPYPVPSAISAGNDVNKVI 55

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 10 VHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTV 57
          +H               + K  ++GAGI GLS A+ L++     D  V
Sbjct: 6  IHHHHHHSSGENLYFQGHMKAIVIGAGIGGLSAAVALKQS--GIDCDV 51

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 24 MGSNHKVAILGAGIIGLSTALELQRRF-PNCDVTVI 58
          M  +  V ILGAG  G+  A E++       +VT+I
Sbjct: 1  MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLI 36

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 11 HSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTV 57
          HS+      +   + S+  VAI+G G +GL+ A  LQ+     DV+V
Sbjct: 10 HSSGLVPRGSHMNLLSDKNVAIIGGGPVGLTMAKLLQQN--GIDVSV 54

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 45.3 bits (108), Expect = 3e-07
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 19 ANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          A  + M  +++  ++G GIIG + A  L +   N +  + 
Sbjct: 9  ARIRAMKRHYEAVVIGGGIIGSAIAYYLAKE--NKNTALF 46

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 45.2 bits (106), Expect = 3e-07
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          K+ ++GAG  GL  A +L++  P   + ++
Sbjct: 2  KILVIGAGPAGLVFASQLKQARPLWAIDIV 31

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 45.1 bits (107), Expect = 3e-07
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF---NMDTTSDGAAGLF 75
          M  ++ V ++G G +GL+TA ++  R     V V+ ++    N +  + GA   +
Sbjct: 1  MTESYDVVVVGGGPVGLATAWQVAER--GHRVLVL-ERHTFFNENGGTSGAERHW 52

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 44.5 bits (105), Expect = 5e-07
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          +  + ++AI+GAG  GL+  + L++     D T++
Sbjct: 3  ISKDSRIAIIGAGPAGLAAGMYLEQAG-FHDYTIL 36

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 44.0 bits (104), Expect = 8e-07
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          +  KV ++G G  G + A  ++   P+ +VT+I
Sbjct: 1  AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLI 33

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          +   VA++G GI GL+ A  L+ R    D  ++
Sbjct: 15 TGMNVAVVGGGISGLAVAHHLRSRGT--DAVLL 45

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)

Query: 24 MGSNH-KVAILGAGIIGLSTALELQRRFPNCDVTV 57
          M     ++A++G  I GL+ AL L+      DV V
Sbjct: 1  MSPTTDRIAVVGGSISGLTAALMLRDA--GVDVDV 33

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 42.6 bits (100), Expect = 3e-06
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 4/38 (10%)

Query: 25 GSNHKVAILGAGIIGLSTALELQRRFPN----CDVTVI 58
               V I+G GI GL+ A  +++         ++T++
Sbjct: 3  DGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLV 40

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 42.6 bits (99), Expect = 3e-06
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 11 HSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61
          H    S    P+      ++ I+GAG  GL   L L++   + DVTV  D+
Sbjct: 6  HHHHHSSGLVPRGSHMKKRIGIVGAGTAGLHLGLFLRQH--DVDVTVYTDR 54

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTV 57
          M     + I GAGI GLS AL L +      VT+
Sbjct: 1  MSEPIDILIAGAGIGGLSCALALHQA-GIGKVTL 33

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 42.2 bits (99), Expect = 4e-06
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          +H V +LG G  GL +A ELQ+      VTV+
Sbjct: 11 SHSVVVLGGGPAGLCSAFELQKA--GYKVTVL 40

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 41.8 bits (97), Expect = 6e-06
 Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          +  V ++GAG  GL  A  L +        ++
Sbjct: 10 SVDVLVIGAGPTGLGAAKRLNQI-DGPSWMIV 40

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 41.4 bits (98), Expect = 6e-06
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI--ADKFNMDTTS 68
          M ++    ++GAG++GL+ A  L       +V V   A+     T+S
Sbjct: 1  MSTDIDCIVIGAGVVGLAIARALAAG--GHEVLVAEAAEGIGTGTSS 45

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 41.6 bits (98), Expect = 6e-06
 Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 3/33 (9%)

Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62
          + I+G+G +G +      R     +V +  D  
Sbjct: 5  LIIIGSGSVGAAAGYYATRA--GLNVLMT-DAH 34

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 40.4 bits (95), Expect = 1e-05
 Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTV 57
          +  + G G  GL+ A+ L++     DV +
Sbjct: 13 RAEVAGGGFAGLTAAIALKQN--GWDVRL 39

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
           +   V I+GAG+ GLS A  L        VTV+
Sbjct: 31 SNPKHVVIVGAGMAGLSAAYVLAGA--GHQVTVL 62

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 29 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADK 61
          KV +LG     L+ A  L+R   +  DV VI   
Sbjct: 3  KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKS 36

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 39.9 bits (92), Expect = 3e-05
 Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
            K+ I+GAG  GL  A+ L       +  + 
Sbjct: 9  TPKIVIIGAGPTGLGAAVRLTELGYK-NWHLY 39

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 39.3 bits (90), Expect = 5e-05
 Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGL 74
          + ++GAG +G + A  L++  P   + ++ ++  +    +GA  L
Sbjct: 39 IVVIGAGRMGAACAFYLRQLAPGRSLLLV-EEGGL-PNEEGATIL 81

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 39.2 bits (90), Expect = 5e-05
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 8/41 (19%)

Query: 18 PANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          P  PK      ++ I+GAGI GL     L R     DVT++
Sbjct: 41 PGPPK------RILIVGAGIAGLVAGDLLTRA--GHDVTIL 73

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 38.8 bits (91), Expect = 6e-05
 Identities = 8/52 (15%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI--ADKFNMDTTSDGAAGLF 75
          ++  V ++GAG +G++   +L ++       ++   D  + + +  G   + 
Sbjct: 2  THFDVIVVGAGSMGMAAGYQLAKQ--GVKTLLVDAFDPPHTNGSHHGDTRII 51

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 38.6 bits (90), Expect = 6e-05
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
            ++GAG++GL+ A  L+       V V+
Sbjct: 26 YVVVGAGVVGLAAAYYLKVW-SGGSVLVV 53

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A Length = 550

 Score = 38.6 bits (88), Expect = 8e-05
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 11 HSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFP-NCDVTVIAD 60
          H ++   P    + G   K+ I+G G  G   A  L +      D+T++  
Sbjct: 9  HHSSGLVPRGSHMSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQA 59

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 38.2 bits (88), Expect = 8e-05
 Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 2/45 (4%)

Query: 14 AQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
           Q+   N +         I+GAG  G   A  L        V ++
Sbjct: 16 EQTNTTNEQQESKGFDYLIVGAGFAGSVLAERLASS--GQRVLIV 58

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 38.1 bits (89), Expect = 8e-05
 Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          +  ++GAG+ GL     L R     ++ V+
Sbjct: 2  RAVVVGAGLGGLLAGAFLARN--GHEIIVL 29

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Length = 405

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
           ++   I+G G  GL+TA  L +     +V V+
Sbjct: 20 KSYDAIIVGGGGHGLATAYFLAKNHGITNVAVL 52

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          S+  V ++GAG  G+  A EL+      +V V+
Sbjct: 10 SDAAVIVVGAGPAGMMLAGELRLA--GVEVVVL 40

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721

 Score = 37.9 bits (86), Expect = 2e-04
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 26 SNHKVAILGAGIIGLSTALELQR 48
           N+++AI+G G  G++   EL R
Sbjct: 55 GNYRIAIVGGGAGGIAALYELGR 77

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          M +   V ++G GI G++ A  L       +V V+
Sbjct: 1  MSNKCDVVVVGGGISGMAAAKLLHDS--GLNVVVL 33

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          S+  V ++GAG  GL  A EL+      DV V+
Sbjct: 11 SDASVIVVGAGPAGLMLAGELRLG--GVDVMVL 41

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* Length = 511

 Score = 37.0 bits (84), Expect = 3e-04
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 29 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFNMDTTSDGAAGL 74
           V I+G G  G  TA  L+  F +  DVT++    N+     G A  
Sbjct: 4  SVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESG-NVRRIGVGEATF 49

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score = 36.6 bits (85), Expect = 3e-04
 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 18 PANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
           +N         V ++G G +GL  A EL+         V+
Sbjct: 40 NSNADDAALTTDVVVVGGGPVGLMLAGELRAG--GVGALVL 78

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 35.9 bits (82), Expect = 5e-04
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 30  VAILGAGIIGLSTALELQRRFPNCDVTVI 58
           + I+GAG  GLS A  L    P+  +T++
Sbjct: 82  IVIVGAGSCGLSAAYVLSTLRPDLRITIV 110

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 35.9 bits (81), Expect = 6e-04
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61
          +V I+GAG+ G   A  L+R+        + DK
Sbjct: 3  QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDK 35

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 Length = 312

 Score = 35.7 bits (82), Expect = 6e-04
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAA 72
          M    KVAI+G+G IG    +++ R     ++  +      D  SDG A
Sbjct: 1  MNQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGI---DAASDGLA 46

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 35.9 bits (83), Expect = 7e-04
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
              VAI+GAG  GL+ A  L++      V VI
Sbjct: 4  LQRDVAIVGAGPSGLAAATALRKA--GLSVAVI 34

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 35.7 bits (83), Expect = 7e-04
 Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
          V I G GI G   A  L R+     V V+
Sbjct: 9  VLINGCGIGGAMLAYLLGRQ--GHRVVVV 35

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 35.6 bits (81), Expect = 8e-04
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
          V I+GAG  GLS A  + +  P+  V +I
Sbjct: 68 VIIVGAGSSGLSAAYVIAKNRPDLKVCII 96

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 35.5 bits (82), Expect = 8e-04
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 7  EFGVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
              HS+      +         V ILG G +G++ AL+L  R       V+
Sbjct: 6  HHHHHSSGLVPRGSHMNAPIETDVLILGGGPVGMALALDLAHR--QVGHLVV 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	90
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.19
3dme_A	369	Conserved exported protein; structural genomics, P	99.04
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.01
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.99
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.95
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.95
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.95
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.94
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.92
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.91
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.9
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.88
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.87
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.84
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.81
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.8
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.78
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.77
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.76
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.76
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.75
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.75
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.74
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.72
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.72
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.71
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.71
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.71
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.71
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.71
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.7
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.7
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.68
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.68
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.67
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.67
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.67
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.67
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.66
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.66
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.66
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.66
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.65
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.65
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.64
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.64
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.64
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.64
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.63
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.63
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.62
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.62
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.61
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.6
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.6
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.6
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.59
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.59
3atr_A	453	Conserved archaeal protein; saturating double bond	98.57
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.57
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.57
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.56
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.56
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.54
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.54
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.54
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.54
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.53
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.53
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.53
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.53
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.53
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.52
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.52
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.51
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.51
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.5
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.48
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.48
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.48
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.47
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.46
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.45
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.45
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.45
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.45
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.44
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.44
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.44
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.44
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.44
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.43
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.43
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.42
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.42
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.42
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.41
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.41
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.41
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.39
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.39
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.38
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.38
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.38
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.38
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.37
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.37
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.36
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.36
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.36
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.35
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.35
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.35
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.35
4dna_A	463	Probable glutathione reductase; structural genomic	98.34
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.34
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.33
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.33
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.32
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.31
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.31
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.31
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.31
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.3
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.3
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.29
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.29
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.29
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.29
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.29
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.29
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.29
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.29
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.28
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.28
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.28
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.28
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.28
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.28
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.27
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.27
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.26
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.26
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.26
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.25
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.25
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.24
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.24
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.24
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.23
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.22
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.22
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.22
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.21
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.21
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.2
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.2
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.19
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.18
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.17
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.17
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.16
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.16
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.16
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.16
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.14
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.14
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.13
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.13
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.13
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.12
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.12
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.12
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.11
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.1
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.1
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.09
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.08
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.08
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.08
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.08
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.07
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.07
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.07
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.07
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.06
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.06
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.05
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.02
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.0
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.0
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.0
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.0
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.0
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.99
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.99
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.98
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.96
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.95
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.94
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.89
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.88
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.84
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.83
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.74
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.74
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.73
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.64
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.62
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.59
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.56
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.25
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.23
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.18
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.13
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.08
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.03
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.02
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.01
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.01
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	96.95
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.93
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.88
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	96.85
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	96.81
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.8
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	96.77
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	96.76
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	96.75
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.73
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	96.72
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.72
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.7
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.68
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	96.64
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.64
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.63
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	96.63
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.56
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	96.53
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	96.5
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	96.49
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	96.47
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.46
1ojt_A	482	Surface protein; redox-active center, glycolysis,	96.45
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	96.44
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.42
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	96.42
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.41
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	96.4
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.4
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	96.39
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.39
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.38
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	96.38
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	96.37
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	96.35
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.34
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.32
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.32
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.31
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.3
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.3
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	96.3
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.3
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	96.29
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	96.28
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	96.28
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.26
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	96.25
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	96.25
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	96.24
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.22
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	96.2
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	96.19
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	96.18
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.17
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.16
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	96.15
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	96.15
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	96.15
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	96.15
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.14
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	96.14
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	96.13
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	96.12
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	96.11
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.09
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	96.08
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.08
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.06
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	96.06
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.05
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	96.03
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	96.03
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.02
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	96.0
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	95.99
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	95.97
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	95.97
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	95.97
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.97
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	95.95
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	95.95
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	95.91
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	95.9
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	95.89
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	95.89
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	95.89
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	95.88
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	95.88
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.88
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	95.87
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.87
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	95.85
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.85
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.82
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	95.81
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	95.79
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	95.78
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	95.78
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	95.78
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.76
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	95.76
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.74
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	95.74
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	95.73
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	95.73
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	95.71
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	95.7
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	95.67
1fec_A	490	Trypanothione reductase; redox-active center, oxid	95.67
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	95.66
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	95.65
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	95.64
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	95.64
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	95.64
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	95.63
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	95.63
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	95.61
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	95.6
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.59
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.59
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.59
4ezb_A	317	Uncharacterized conserved protein; structural geno	95.59
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.56
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.55
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	95.55
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	95.55
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	95.54
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.54
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	95.53
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	95.52
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	95.48
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	95.46
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	95.42
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	95.41
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	95.38
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	95.37
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	95.36
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	95.34
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.34
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	95.32
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	95.3
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.3
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	95.28
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	95.26
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	95.24
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	95.23
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	95.23
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	95.22
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	95.21
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	95.21
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	95.2
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	95.19
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	95.19
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	95.19
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	95.19
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	95.16
3r9u_A	315	Thioredoxin reductase; structural genomics, center	95.16
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.16
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	95.16
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	95.15
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	95.15
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	95.14
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.13
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.11
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	95.09
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	95.08
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	95.07
4dna_A	463	Probable glutathione reductase; structural genomic	95.04
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	95.02
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	95.01
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	95.0
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	94.99
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	94.97
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	94.97
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	94.94
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	94.93
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	94.92
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	94.92
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	94.91
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	94.9
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	94.9
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	94.9
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.89
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	94.86
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	94.84
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	94.81
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	94.81
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	94.81
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	94.8
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	94.75
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	94.75
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	94.72
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	94.72
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	94.71
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	94.7
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	94.68
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	94.68
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	94.67
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	94.65
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	94.64
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	94.62
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	94.61
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	94.6
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	94.6
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	94.56
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	94.55
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	94.52
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	94.51
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	94.5
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	94.5
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	94.47
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	94.46
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	94.39
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	94.34
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	94.34
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	94.32
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	94.31
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	94.3
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	94.29
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	94.29
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	94.27
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	94.24
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	94.23
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	94.23
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	94.22
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.21
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	94.21
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	94.21
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	94.15
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	94.13
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	94.12
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	94.11
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	94.11
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	94.1
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	94.1
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	94.08
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	94.06
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	94.01
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	94.0
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	94.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	93.96
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	93.96
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	93.95
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	93.95
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	93.92
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	93.87
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	93.87
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	93.86
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	93.86
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	93.84
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	93.78
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	93.77
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	93.76
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	93.76
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	93.72
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	93.72
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	93.71
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	93.7
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	93.63
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	93.62
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	93.58
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	93.57
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	93.54
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	93.53
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	93.53
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	93.53
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	93.49
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	93.46
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	93.46
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	93.44
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	93.43
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	93.42
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	93.42
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	93.41
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	93.39
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	93.39
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	93.34

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.19  E-value=2.8e-11  Score=77.31  Aligned_cols=37  Identities=30%  Similarity=0.426  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      ..||+|||||++||++|+.|++  .|++|+||||...++
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~--~G~~V~v~Ek~~~~G   38 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTA--AGHQVHLFDKSRGSG   38 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCC
Confidence            4689999999999999999999  899999999986553

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.04  E-value=6.8e-10  Score=76.18  Aligned_cols=51  Identities=22%  Similarity=0.265  Sum_probs=44.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC-CCCCCccCcCeeeecCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAGLFEPSP   79 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~-~~~~~s~~~~g~~~~~~   79 (90)
                      .+||+|||+|++|+++|+.|++  .|.+|+|+|+.. ...++|..++|.+++..
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~--~G~~V~vlE~~~~~~~~~s~~~~g~~~~~~   55 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAA--GGHEVLVAEAAEGIGTGTSSRNSEVIHAGI   55 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSSCSTTSSSCCEECCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCCccCcCCccccccCc
Confidence            4699999999999999999999  899999999984 44677888888887643

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.01  E-value=2.4e-10  Score=79.38  Aligned_cols=52  Identities=23%  Similarity=0.369  Sum_probs=45.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeecCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSP   79 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~~~   79 (90)
                      ..+||+|||+|++|+++|+.|++  .|.+|+|+|+...+.++|..++|++.+..
T Consensus        16 ~~~dvvIIGgG~~Gl~~A~~La~--~G~~V~llE~~~~~~g~s~~~~g~~~~~~   67 (382)
T 1ryi_A           16 RHYEAVVIGGGIIGSAIAYYLAK--ENKNTALFESGTMGGRTTSAAAGMLGAHA   67 (382)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSTTTTHHHHCCCBCCGGG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCCCcccchhcCceeccCc
Confidence            45799999999999999999999  89999999998766777888888887754

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.99  E-value=4.6e-10  Score=78.09  Aligned_cols=51  Identities=24%  Similarity=0.406  Sum_probs=43.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeecC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPS   78 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~~   78 (90)
                      ...||+|||+|++|+++|+.|++  .|.+|+|+|+.....++|..++|++.+.
T Consensus         4 ~~~dVvIIGgGi~Gl~~A~~La~--~G~~V~lle~~~~~~gas~~~~g~~~~~   54 (382)
T 1y56_B            4 EKSEIVVIGGGIVGVTIAHELAK--RGEEVTVIEKRFIGSGSTFRCGTGIRQQ   54 (382)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSTTCSHHHHCCCCCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCccccccCeeeec
Confidence            35799999999999999999999  8999999999865566777777877763

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.95  E-value=8.6e-10  Score=76.09  Aligned_cols=36  Identities=17%  Similarity=0.199  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      .+||+|||||++|+++|+.|++  .|++|+|+|+.+.+
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~--~G~~V~v~Er~~~~   39 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAK--YGLKTLMIEKRPEI   39 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSST
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCC
Confidence            4799999999999999999999  89999999997544

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.95  E-value=1.7e-09  Score=75.17  Aligned_cols=50  Identities=14%  Similarity=0.327  Sum_probs=43.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC--CCccCcCeeeecC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD--TTSDGAAGLFEPS   78 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~--~~s~~~~g~~~~~   78 (90)
                      ..||+|||+|++|+++|+.|++  .|.+|+|+|+...+.  ++|..+++++++.
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~--~G~~V~vie~~~~~~~~g~s~~~~~~~~~~   54 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAK--QGVKTLLVDAFDPPHTNGSHHGDTRIIRHA   54 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCSSCSSSSSCSSEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCCCCCCCCcchhhhhh
Confidence            4699999999999999999999  899999999987665  7777888888764

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.95  E-value=1.6e-09  Score=75.14  Aligned_cols=50  Identities=38%  Similarity=0.597  Sum_probs=40.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC-----CccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT-----TSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~-----~s~~~~g~~~~   77 (90)
                      ...||+|||+|++|+++|+.|++  .|.+|+|+|+...+.+     ++..++|.+.+
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~--~G~~V~vle~~~~~~g~s~~~~s~~~~g~~~~   59 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILAR--KGYSVHILARDLPEDVSSQTFASPWAGANWTP   59 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSCTTCTTCTTSSGGGCCCBCCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh--CCCEEEEEeccCCCCcCCcCcccCcccccccC
Confidence            45799999999999999999999  8999999999764442     34445566655

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.94  E-value=4.2e-10  Score=77.82  Aligned_cols=48  Identities=50%  Similarity=0.763  Sum_probs=43.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCC------CcEEEEccCCCCCCCccCcCeeeecC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPN------CDVTVIADKFNMDTTSDGAAGLFEPS   78 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g------~~v~vie~~~~~~~~s~~~~g~~~~~   78 (90)
                      ||+|||+|++|+++|+.|++  .|      .+|+|+|+...+.++|..++|++++.
T Consensus         2 dVvIIGgGi~Gls~A~~La~--~G~~~~p~~~V~vlE~~~~~~~aS~~~~g~~~~~   55 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHE--RYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPY   55 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--HHTTTSSSCEEEEEESSCGGGSGGGTCCCBCCCC
T ss_pred             cEEEECCCHHHHHHHHHHHH--hccccCCCceEEEEECCCCCCCccccCcceeecc
Confidence            89999999999999999999  55      89999999877778899999999873

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.92  E-value=2e-09  Score=75.41  Aligned_cols=49  Identities=22%  Similarity=0.369  Sum_probs=40.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC--CCccCcCeeeec
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD--TTSDGAAGLFEP   77 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~--~~s~~~~g~~~~   77 (90)
                      ..||+|||+|++|+++|+.|++  .|.+|+|+|+...+.  ++|..+++++..
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~--~G~~V~vlE~~~~~~~~gas~~~~~~~~~   54 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAE--RGHRVLVLERHTFFNENGGTSGAERHWRL   54 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTTCSSSSCCSSEEEECS
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCCCCCCCcCeEEEe
Confidence            3699999999999999999999  899999999986654  566666666644

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.91  E-value=1.3e-09  Score=77.58  Aligned_cols=51  Identities=22%  Similarity=0.287  Sum_probs=44.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEcc-CCCCCCCccCcCeeeecC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPN-CDVTVIAD-KFNMDTTSDGAAGLFEPS   78 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~-~~~~~~~s~~~~g~~~~~   78 (90)
                      ...||+|||+|++|+++|+.|++  .| .+|+|+|+ .....++|..++|++++.
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~--~G~~~V~vlE~~~~~~~g~S~~~~g~i~~~   74 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKV--WSGGSVLVVDAGHAPGSGDSGRSMAAFRTF   74 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--HHCSCEEEEESSSSTTCSGGGSSCCEEECC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHh--CCCCcEEEEccCCCCCCCcccCCCcEeccc
Confidence            45799999999999999999999  68 89999999 655567788889988874

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.90  E-value=2.7e-09  Score=77.70  Aligned_cols=49  Identities=18%  Similarity=0.247  Sum_probs=44.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      .+||+|||+|++|+++|+.|++  .|.+|+|+|+.....++|..++|++++
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~--~G~~V~llE~~~~~~gtS~~s~gli~~   51 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAG--RGLSVLMLEAQDLACATSSASSKLIHG   51 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSTTCSGGGSSCCEECC
T ss_pred             cCCEEEECcCHHHHHHHHHHHh--CCCCEEEEECCCCCCCccccccccccc
Confidence            4699999999999999999999  899999999987777788888888875

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.88  E-value=2.2e-09  Score=74.19  Aligned_cols=50  Identities=22%  Similarity=0.281  Sum_probs=42.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC-CCCccCcCeeeecC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM-DTTSDGAAGLFEPS   78 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~-~~~s~~~~g~~~~~   78 (90)
                      ...||+|||+|++|+++|+.|++   |.+|+|+|+...+ .++|..++|++.+.
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La~---G~~V~vlE~~~~~g~~as~~~~g~~~~~   58 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLSA---HGRVVVLEREAQPGYHSTGRSAAHYTVA   58 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT---TSCEEEECSSSSTTSSGGGSCCCEECSS
T ss_pred             CcCCEEEECCcHHHHHHHHHHhC---CCCEEEEECCCCccccccccccceeecc
Confidence            35799999999999999999994   8999999998544 47788888888764

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.87  E-value=7.4e-09  Score=72.24  Aligned_cols=53  Identities=19%  Similarity=0.258  Sum_probs=44.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHh-hCCC-CcEEEEccCCCCCCCccCcCeeeecC
Q psy1704          24 MGSNHKVAILGAGIIGLSTALELQR-RFPN-CDVTVIADKFNMDTTSDGAAGLFEPS   78 (90)
Q Consensus        24 ~~~~~~v~IiG~G~~Gl~~A~~l~~-~~~g-~~v~vie~~~~~~~~s~~~~g~~~~~   78 (90)
                      .....||+|||+|++|+++|+.|++ +  | .+|+|+|+.....++|..++|.+++.
T Consensus        18 ~~~~~dVvIIG~G~~Gl~~A~~La~~~--G~~~V~vlE~~~~~~gas~~~~g~~~~~   72 (405)
T 2gag_B           18 PKKSYDAIIVGGGGHGLATAYFLAKNH--GITNVAVLEKGWLAGGNMARNTTIIRSN   72 (405)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHHH--CCCCEEEECSSSTTCSGGGTSCCCBCCC
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHhc--CCCcEEEEeCCCCCCCcccccCceeeec
Confidence            3445799999999999999999987 4  6 89999999886677788888887764

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.84  E-value=8.8e-09  Score=77.60  Aligned_cols=52  Identities=31%  Similarity=0.388  Sum_probs=44.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC-CCCccCcCeeeecCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM-DTTSDGAAGLFEPSP   79 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~-~~~s~~~~g~~~~~~   79 (90)
                      ...||+|||+|++|+++|+.|++  .|.+|+|+|+...+ .++|..++|.+++..
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~--~G~~V~vlEk~~~~g~gaS~~~~G~l~~~~  315 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQR--RGAVVTLYCADAQPAQGASGNRQGALYPLL  315 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHT--TTCCEEEEESSSSTTCSGGGCSCEEECCCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHH--CCCcEEEEeCCCccccccccccCCEEecCC
Confidence            34799999999999999999999  89999999997543 567888899988754

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.81  E-value=8e-09  Score=76.63  Aligned_cols=50  Identities=20%  Similarity=0.257  Sum_probs=44.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ...||+|||||++|+++|+.|++  .|.+|+|+|+.....++|..++|+++.
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~--rG~~V~LlE~~~~~~GtS~~s~gli~~   80 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAA--SGIKTGLIEMQDFAEGTSSRSTKLVHG   80 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSTTCSGGGSSCSEECC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCccccccccccc
Confidence            35799999999999999999999  899999999987777888888888765

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.80  E-value=1.6e-08  Score=75.88  Aligned_cols=51  Identities=25%  Similarity=0.280  Sum_probs=44.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC-CCCccCcCeeeecCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM-DTTSDGAAGLFEPSP   79 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~-~~~s~~~~g~~~~~~   79 (90)
                      ..||+|||+|++|+++|+.|++  .|.+|+|+|+...+ .++|..++|.+++..
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~--~G~~V~vlEk~~~~g~gaS~~~~G~l~~~~  323 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLR--RGWQVTLYCADEAPALGASGNRQGALYPLL  323 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSSCSTTCCSCEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCcccccCccCCCceecCcC
Confidence            3799999999999999999999  89999999996544 467888899988843

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.78  E-value=1e-08  Score=70.96  Aligned_cols=49  Identities=16%  Similarity=0.307  Sum_probs=38.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC--CCccCcCeeeec
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD--TTSDGAAGLFEP   77 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~--~~s~~~~g~~~~   77 (90)
                      ..||+|||+|++|+++|+.|++  .|.+|+|+|+...+.  .++...++++..
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~--~G~~V~vle~~~~~~~~~~~~~~~~~~~~   52 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATR--AGLNVLMTDAHMPPHQHGSHHGDTRLIRH   52 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHH--TTCCEEEECSSCSSSSSSSCCSSEEEECS
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCCCCCCCccceeee
Confidence            3699999999999999999999  899999999986543  333444556654

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.77  E-value=5.6e-09  Score=75.06  Aligned_cols=37  Identities=24%  Similarity=0.387  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ++|+|||+|++||++|+.|++  .|.+|+|+|++..+++
T Consensus         2 k~VvVIGaG~~GL~aA~~La~--~G~~V~VlEa~~~~GG   38 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQA--AGIPVLLLEQRDKPGG   38 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHH--TTCCEEEECCC-----
T ss_pred             CCEEEECCcHHHHHHHHHHHH--CCCcEEEEccCCCCCC
Confidence            589999999999999999999  8999999999876654

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.76  E-value=1.3e-08  Score=70.04  Aligned_cols=40  Identities=30%  Similarity=0.423  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ..||+|||+|++|+++|++|+++..|++|+|||+...+++
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG  104 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG  104 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCc
Confidence            4699999999999999999975336999999999866544

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.76  E-value=5.2e-09  Score=75.12  Aligned_cols=40  Identities=20%  Similarity=0.239  Sum_probs=34.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      +..||+|||||++||++|+.|++. .|.+|+|+|++...++
T Consensus         9 ~~~DVvIIGaGisGLsaA~~L~k~-~G~~V~VlE~~~~~GG   48 (513)
T 4gde_A            9 ISVDVLVIGAGPTGLGAAKRLNQI-DGPSWMIVDSNETPGG   48 (513)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHH-CCSCEEEEESSSSCCG
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhh-CCCCEEEEECCCCCcC
Confidence            347999999999999999999863 4899999999877655

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.75  E-value=1.3e-08  Score=74.27  Aligned_cols=48  Identities=25%  Similarity=0.403  Sum_probs=41.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE   76 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~   76 (90)
                      .+||+|||+|++|+++|+.|++  .|.+|+|+||....++++..++|.+.
T Consensus        41 ~~DVvVVGaG~AGl~AA~~aa~--~G~~V~vlEk~~~~GG~s~~s~G~~~   88 (510)
T 4at0_A           41 EADVVVAGYGIAGVAASIEAAR--AGADVLVLERTSGWGGATALAGGFIY   88 (510)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTTGGGSCCCEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCcchhcCccee
Confidence            4699999999999999999999  89999999999877777766666543

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.75  E-value=1.1e-08  Score=69.45  Aligned_cols=35  Identities=29%  Similarity=0.480  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +.+||+|||+|++|+++|..|++  .|.+|+|||+..
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~--~g~~V~liE~~~   39 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASR--ANLKTVMIERGI   39 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCCEEEEecCC
Confidence            46899999999999999999999  899999999864

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.72  E-value=1.2e-08  Score=75.22  Aligned_cols=50  Identities=20%  Similarity=0.305  Sum_probs=42.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ...||+|||+|++|+++|+.|++  .|.+|+|+||...+++.+..++|.++.
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~--~G~~V~vlEk~~~~gg~s~~s~gg~~~  169 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKK--AGANVILVDKAPFSGGNSMISAGGMNA  169 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH--HTCCEEEECSSSSSCTTGGGCCSCEEC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCcccccCceeEc
Confidence            34699999999999999999999  799999999988777766666666654

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.72  E-value=3e-08  Score=70.29  Aligned_cols=38  Identities=37%  Similarity=0.423  Sum_probs=34.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNMD   65 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~~~~   65 (90)
                      ...||+|||+|++|+++|+.|++  .|. +|+|+|+...+.
T Consensus         5 ~~~dVvIIGgG~aGlsaA~~La~--~G~~~V~vlE~~~~~~   43 (438)
T 3dje_A            5 KSSSLLIVGAGTWGTSTALHLAR--RGYTNVTVLDPYPVPS   43 (438)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHH--TTCCCEEEEESSCSSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH--cCCCcEEEEeCCCCCC
Confidence            35799999999999999999999  899 999999986554

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.71  E-value=2.2e-08  Score=73.93  Aligned_cols=49  Identities=22%  Similarity=0.320  Sum_probs=41.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ..||+|||+|++|+++|+.|++  .|.+|+|+||....++.+..++|.+..
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~--~G~~V~vlEk~~~~gg~s~~a~gg~~~  174 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATD--SGAKVILIEKEPVIGGNAKLAAGGMNA  174 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTTGGGCCSCEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCchhhcCceEEe
Confidence            4799999999999999999999  899999999987776666655555543

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.71  E-value=2e-08  Score=74.41  Aligned_cols=50  Identities=20%  Similarity=0.245  Sum_probs=43.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ..+||+|||||++|+.+|+.|++  .|.+|+|+|++....++|..+.++++.
T Consensus        17 ~~~DVvVIGgGi~Gl~~A~~La~--~G~~V~LlEk~d~~~GtS~~ss~lihg   66 (561)
T 3da1_A           17 KQLDLLVIGGGITGAGIALDAQV--RGIQTGLVEMNDFASGTSSRSTKLVHG   66 (561)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHT--TTCCEEEEESSSTTCSGGGSSCCEECC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCCCcccCCcCcccc
Confidence            35799999999999999999999  899999999987777777777776654

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.71  E-value=2.7e-08  Score=69.09  Aligned_cols=35  Identities=31%  Similarity=0.390  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      .+|+|||||++||++|+.|++  .|++|+|||+.+.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~--~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRK--HGIKVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CCCCEEEEecCCCC
Confidence            389999999999999999999  89999999997544

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.71  E-value=5e-09  Score=75.24  Aligned_cols=40  Identities=28%  Similarity=0.387  Sum_probs=33.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        24 ~~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      +...+||+|||||++|+++|+.|++  .|.+|+|+|+...++
T Consensus        24 ~~~~~dViIIGgG~AGl~aA~~La~--~G~~V~llEk~~~~g   63 (417)
T 3v76_A           24 VAEKQDVVIIGAGAAGMMCAIEAGK--RGRRVLVIDHARAPG   63 (417)
T ss_dssp             ----CCEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSC
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCC
Confidence            3456799999999999999999999  899999999986543

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.70  E-value=9.3e-09  Score=72.78  Aligned_cols=47  Identities=15%  Similarity=0.266  Sum_probs=39.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCe
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG   73 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g   73 (90)
                      ..||+|||+|++|+++|+.|+++.+|.+|+|+|+...+..++..++|
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s~~~~g   82 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILA   82 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHC
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcchhccCC
Confidence            37999999999999999999993339999999998666666666666

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.70  E-value=1.6e-08  Score=68.80  Aligned_cols=35  Identities=26%  Similarity=0.441  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|++|||+|++|+++|++|++  .|++|+|||++.
T Consensus         5 ~~yDVvIIGaGpAGlsAA~~lar--~g~~v~lie~~~   39 (304)
T 4fk1_A            5 KYIDCAVIGAGPAGLNASLVLGR--ARKQIALFDNNT   39 (304)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSC
T ss_pred             CCcCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence            45799999999999999999999  899999999864

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.68  E-value=1.1e-08  Score=73.44  Aligned_cols=39  Identities=18%  Similarity=0.331  Sum_probs=34.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      .+..||+|||+|++|+++|+.|++  .|.+|+|+|+...++
T Consensus        24 ~~~~dVvIIGgG~aGl~aA~~la~--~G~~V~llEk~~~~g   62 (447)
T 2i0z_A           24 AMHYDVIVIGGGPSGLMAAIGAAE--EGANVLLLDKGNKLG   62 (447)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSC
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHH--CCCCEEEEECCCCCC
Confidence            345799999999999999999999  899999999976543

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.68  E-value=3.1e-08  Score=73.93  Aligned_cols=39  Identities=31%  Similarity=0.353  Sum_probs=34.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        24 ~~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      +++..||+|||||++|+++|+.|++  .|.+|+|+|+...+
T Consensus        20 ~M~~~DVvIVGgG~AGl~aA~~Lar--~G~~V~LiEr~~~~   58 (591)
T 3i3l_A           20 HMTRSKVAIIGGGPAGSVAGLTLHK--LGHDVTIYERSAFP   58 (591)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCSS
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHc--CCCCEEEEcCCCCC
Confidence            3456899999999999999999999  89999999998544

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.67  E-value=3.2e-08  Score=71.20  Aligned_cols=39  Identities=21%  Similarity=0.158  Sum_probs=35.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ..+||+|||+|++||++|..|++  .|.+|+|+|++...++
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~--~G~~V~vlE~~~~~GG   48 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSV--DGKKVLHIDKQDHYGG   48 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCc
Confidence            45799999999999999999999  8999999999876654

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.67  E-value=2.7e-08  Score=67.67  Aligned_cols=45  Identities=27%  Similarity=0.383  Sum_probs=36.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCC-CCcEEEEccCCCCCCCccCcCe
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADKFNMDTTSDGAAG   73 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~-g~~v~vie~~~~~~~~s~~~~g   73 (90)
                      ..||+|||+|++|+.+|+.|++  . |.+|+|+|+...+++.++..++
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~--~~G~~V~viEk~~~~gg~~~~~~~   84 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISK--NPNVQVAIIEQSVSPGGGAWLGGQ   84 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT--STTSCEEEEESSSSCCTTTTCCST
T ss_pred             ccCEEEECccHHHHHHHHHHHH--cCCCeEEEEECCCCCCCceecCCc
Confidence            4699999999999999999998  6 8999999998766544444333

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.67  E-value=2.7e-08  Score=70.00  Aligned_cols=37  Identities=27%  Similarity=0.357  Sum_probs=33.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      +||+|||+|++||++|+.|++  .|.+|+|+|++..+++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~--~G~~V~vlE~~~~~GG   37 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSK--AGHEVEVFERLPITGG   37 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHH--TTCEEEEECSSSSSBT
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCceEEEeCCCCCCC
Confidence            389999999999999999999  8999999999866543

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.67  E-value=1.8e-08  Score=68.40  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=32.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+.+||+|||+|++|+.+|+.|++  .|.+|+|+|+.+
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~vie~~~   55 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLAR--AEIKPILYEGMM   55 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEecCC
Confidence            355799999999999999999999  899999999964

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.66  E-value=3.5e-08  Score=69.71  Aligned_cols=36  Identities=22%  Similarity=0.389  Sum_probs=32.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ||+|||+|++||++|+.|++  .|.+|+|+|++...++
T Consensus         2 dVvVIGaGiaGLsaA~~La~--~G~~V~vlE~~~~~GG   37 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLAR--NGHEIIVLEKSAMIGG   37 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHH--TTCEEEEECSSSSSCT
T ss_pred             cEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCCCc
Confidence            89999999999999999999  8999999999865543

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.66  E-value=2.9e-08  Score=69.84  Aligned_cols=38  Identities=32%  Similarity=0.462  Sum_probs=33.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...+||+|||||++|+++|+.|++  .|.+|+|+|+...+
T Consensus        21 ~~~~dV~IVGaG~aGl~~A~~La~--~G~~V~v~E~~~~~   58 (407)
T 3rp8_A           21 QGHMKAIVIGAGIGGLSAAVALKQ--SGIDCDVYEAVKEI   58 (407)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCC
Confidence            345799999999999999999999  89999999997544

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.66  E-value=2.9e-08  Score=70.86  Aligned_cols=37  Identities=30%  Similarity=0.617  Sum_probs=32.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccCCCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKFNMDT   66 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~~~~~~   66 (90)
                      .||+|||||++||++|+.|++  .|.  +|+|+|++...++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~--~G~~~~V~vlEa~~~~GG   41 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSR--APCPPKVVLVESSERLGG   41 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHT--SSSCCEEEEECSSSSSBT
T ss_pred             ceEEEECCcHHHHHHHHHHHh--CCCCCcEEEEeCCCCCCC
Confidence            589999999999999999999  788  9999999765543

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.66  E-value=1.4e-08  Score=71.90  Aligned_cols=37  Identities=24%  Similarity=0.503  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCC------CcEEEEccCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPN------CDVTVIADKFNMD   65 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g------~~v~vie~~~~~~   65 (90)
                      ..||+|||||++||++|+.|++  .|      .+|+|+|+....+
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~--~G~~~~~~~~V~vlEa~~~~G   47 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEK--EIKEKNLPLELTLVEASPRVG   47 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--HHTTTTCSEEEEEECSSSSSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHH--hccccCCCCCEEEEECCCCCC
Confidence            3699999999999999999999  67      8999999975543

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.65  E-value=3e-08  Score=69.91  Aligned_cols=37  Identities=19%  Similarity=0.328  Sum_probs=32.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      +||+|||+|++|+++|+.|++  .|.+|+|+|++...++
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~--~G~~V~vlE~~~~~GG   38 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTN--AGKKVLLLEGGERLGG   38 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHH--TTCCEEEECSSSSSBT
T ss_pred             CCEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCccC
Confidence            589999999999999999999  8999999999655433

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.65  E-value=2.7e-08  Score=69.89  Aligned_cols=36  Identities=19%  Similarity=0.285  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ..||+|||||++|+++|+.|++  .|.+|+|+|+...+
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~--~G~~V~v~E~~~~~   40 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNK--SGFKVKIVEKQKFP   40 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCSS
T ss_pred             cCcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCC
Confidence            4799999999999999999999  89999999998544

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.64  E-value=2.8e-08  Score=67.15  Aligned_cols=34  Identities=24%  Similarity=0.331  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+||+|||+|++|+++|..|++  .|.+|+|+|+..
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~--~g~~v~liE~~~   37 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGR--SSLKPVMYEGFM   37 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCC
Confidence            3799999999999999999999  899999999874

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.64  E-value=2.5e-08  Score=72.49  Aligned_cols=38  Identities=34%  Similarity=0.497  Sum_probs=34.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFNMDT   66 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~~~~~   66 (90)
                      ..||+|||||++||++|+.|.+  .| .+|+|+|++...++
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~--~G~~~V~VlEa~~riGG   46 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQ--NGIQDCLVLEARDRVGG   46 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHH--TTCCSEEEECSSSSSBT
T ss_pred             CCcEEEECCCHHHHHHHHHHHh--cCCCCEEEEeCCCCCCC
Confidence            4699999999999999999999  88 99999999876544

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.64  E-value=1.1e-08  Score=71.46  Aligned_cols=34  Identities=29%  Similarity=0.432  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..||+|||+|++|+++|+.|++  .|.+|+|+|+..
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~   35 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQT   35 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHH--HTCCEEEECSSC
T ss_pred             CccEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence            3689999999999999999999  799999999975

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.64  E-value=5.9e-08  Score=69.72  Aligned_cols=39  Identities=36%  Similarity=0.580  Sum_probs=34.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ...||+|||+|++||++|+.|++  .|.+|+|+|+....++
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~--~g~~v~v~E~~~~~GG   48 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQK--AGYKVTVLEARTRPGG   48 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCCEEEEeccCCCCC
Confidence            35699999999999999999999  8999999999866554

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.63  E-value=5.7e-08  Score=74.49  Aligned_cols=49  Identities=29%  Similarity=0.392  Sum_probs=40.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCCCC--CCCccCcCeeeec
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM--DTTSDGAAGLFEP   77 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~~~--~~~s~~~~g~~~~   77 (90)
                      ..||+|||+|++|+++|+.|++  .|. +|+|+|++..+  ++++..++|++.+
T Consensus         4 ~~dVvIIGgGi~Gls~A~~La~--~G~~~V~vlE~~~~~~~~gss~~~~G~~~~   55 (830)
T 1pj5_A            4 TPRIVIIGAGIVGTNLADELVT--RGWNNITVLDQGPLNMPGGSTSHAPGLVFQ   55 (830)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSCTTCCCSGGGTCCCEECC
T ss_pred             CCCEEEECcCHHHHHHHHHHHh--CCCCcEEEEeCCCCCCCcccceeCCceeec
Confidence            4699999999999999999999  788 99999998653  4555666677654

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.63  E-value=2.5e-08  Score=71.32  Aligned_cols=35  Identities=37%  Similarity=0.592  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +..+|+|||||++|+++|+.|++  .|.+|+|+|+..
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~--~G~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQ--HDVDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHH--TTCEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHH--CCCeEEEEcCCC
Confidence            44799999999999999999999  899999999875

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.62  E-value=7.3e-08  Score=67.93  Aligned_cols=39  Identities=26%  Similarity=0.496  Sum_probs=34.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFNMDT   66 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~~~~~   66 (90)
                      ...||+|||+|++||++|+.|++  .| .+|+|+|++...++
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~--~g~~~v~v~E~~~~~GG   44 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQ--AGFHDYTILERTDHVGG   44 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSSCSST
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh--CCCCcEEEEECCCCCCC
Confidence            34699999999999999999999  78 89999999766543

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.62  E-value=5.2e-08  Score=70.72  Aligned_cols=38  Identities=24%  Similarity=0.420  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ..||+|||+|++||++|+.|++  .|.+|+|+|++...++
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~--~G~~V~vlE~~~~~GG   41 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHD--SGLNVVVLEARDRVGG   41 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHH--TTCCEEEECSSSSSBT
T ss_pred             CceEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCCCC
Confidence            4689999999999999999999  8999999999865543

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.61  E-value=6.7e-08  Score=70.13  Aligned_cols=45  Identities=31%  Similarity=0.441  Sum_probs=36.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE   76 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~   76 (90)
                      ||+|||+|++|+++|+.|++  .|.+|+|+||. ..++.+..++|.+.
T Consensus         1 DVvVIG~G~AGl~aA~~la~--~G~~V~viek~-~~~g~s~~a~Ggi~   45 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRR--AGKKVTLISKR-IDGGSTPIAKGGVA   45 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHH--TTCCEEEECSS-TTCSSGGGCCSCEE
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCCEEEEeCC-CCCchHHHHhCCeE
Confidence            69999999999999999999  79999999998 44444444444443

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.60  E-value=8.6e-08  Score=69.95  Aligned_cols=37  Identities=35%  Similarity=0.502  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...||+|||||++|+++|+.|++  .|.+|+|||+....
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~--~G~~v~viEr~~~~   40 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLAR--QGVRVLVVERRPGL   40 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSSSC
T ss_pred             ccCcEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCC
Confidence            35799999999999999999999  89999999997543

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.60  E-value=3.1e-08  Score=74.91  Aligned_cols=48  Identities=21%  Similarity=0.268  Sum_probs=38.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE   76 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~   76 (90)
                      .+||+|||+|++|+++|+.|++  .|.+|+|+||....++.+..++|.+.
T Consensus         5 ~~DVvVIGgG~AGL~AAl~aae--~G~~V~vlEK~~~~~g~s~~a~GGi~   52 (660)
T 2bs2_A            5 YCDSLVIGGGLAGLRAAVATQQ--KGLSTIVLSLIPVKRSHSAAAQGGMQ   52 (660)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCGGGSGGGGCCSCEE
T ss_pred             cccEEEECchHHHHHHHHHHHH--CCCcEEEEeccCCCCCcccccCCCeE
Confidence            4699999999999999999999  89999999998655444444444443

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.60  E-value=6.9e-08  Score=67.87  Aligned_cols=36  Identities=31%  Similarity=0.517  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ...||+|||||++|+++|+.|++  .|.+|+|+|+...
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~   39 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRD--AGVDVDVYERSPQ   39 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCC
Confidence            34699999999999999999999  8999999999754

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.59  E-value=8e-08  Score=70.16  Aligned_cols=39  Identities=28%  Similarity=0.361  Sum_probs=34.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        24 ~~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      +.+..||+|||+|++|+++|+.|++  .|.+|+|+|+...+
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~--~G~~v~vlE~~~~~   46 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRL--AGVEVVVLERLVER   46 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCCC-
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCC
Confidence            3455799999999999999999999  89999999997544

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.59  E-value=8.6e-08  Score=67.65  Aligned_cols=36  Identities=36%  Similarity=0.501  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCc-EEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~-v~vie~~~~~   64 (90)
                      ..||+|||+|++|+++|+.|++  .|.+ |+|+|+...+
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~--~G~~~v~v~E~~~~~   40 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQ--AGIGKVTLLESSSEI   40 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCCeEEEEECCCCc
Confidence            4699999999999999999999  8999 9999997544

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.57  E-value=3.9e-08  Score=70.47  Aligned_cols=36  Identities=28%  Similarity=0.384  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ..||+|||||++|+++|+.|++  .|.+|+|+|+...+
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~--~G~~V~vlE~~~~~   41 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSR--RGLKILLVDSKPWN   41 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSS--SSCCEEEECSSCGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCC
Confidence            4799999999999999999999  89999999997543

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.57  E-value=1.3e-07  Score=66.55  Aligned_cols=37  Identities=38%  Similarity=0.524  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...||+|||||++|+++|+.|++  .|.+|+|+|+...+
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~   61 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQ--NGIDVSVYERDNDR   61 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHT--TTCEEEEEECSSST
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCc
Confidence            45799999999999999999999  89999999997543

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.57  E-value=5.9e-08  Score=68.94  Aligned_cols=38  Identities=34%  Similarity=0.493  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ..||+|||+|++||++|+.|++  .|.+|+|+|++...++
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~--~g~~v~v~E~~~~~GG   42 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRK--AGLSVAVIEARDRVGG   42 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEECCCCCCC
Confidence            4699999999999999999999  8999999999765543

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.56  E-value=1.3e-07  Score=70.28  Aligned_cols=38  Identities=29%  Similarity=0.455  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCC------CCcEEEEccCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFP------NCDVTVIADKFNMD   65 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~------g~~v~vie~~~~~~   65 (90)
                      +.+||+|||+|++|+++|+.|++  .      |.+|+|+|+...++
T Consensus        34 ~~~DVvIVGaG~aGlaaA~~La~--~~~~~~~G~~V~vlEk~~~~g   77 (584)
T 2gmh_A           34 EEADVVIVGAGPAGLSAATRLKQ--LAAQHEKDLRVCLVEKAAHIG   77 (584)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH--HHHHTTCCCCEEEECSSSSTT
T ss_pred             cCCCEEEECcCHHHHHHHHHHHh--cccccCCCCcEEEEeCCCCCC
Confidence            34799999999999999999998  5      89999999986543

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.56  E-value=6.3e-08  Score=71.45  Aligned_cols=49  Identities=29%  Similarity=0.331  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ...||+|||+|++|+++|+.|++   |.+|+|+||....++.|..++|.+..
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~---G~~V~vlEk~~~~~g~s~~a~Ggi~~   55 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD---QHQVIVLSKGPVTEGSTFYAQGGIAA   55 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT---TSCEEEECSSCTTC------------
T ss_pred             CCCCEEEECccHHHHHHHHHHhc---CCcEEEEECCCCCCCChhhcCCCEEE
Confidence            34799999999999999999987   78999999987665555555554443

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.54  E-value=8.6e-08  Score=67.17  Aligned_cols=36  Identities=31%  Similarity=0.279  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ..||+|||+|++|+++|+.|++  .|.+|+|+|+...+
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~--~G~~V~viE~~~~~   41 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGR--QGHRVVVVEQARRE   41 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCCC
Confidence            4699999999999999999999  89999999997543

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.54  E-value=1.4e-07  Score=69.98  Aligned_cols=37  Identities=24%  Similarity=0.330  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      +.+||+|||+|++|+++|+.|++  .|.+|+|||+...+
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~--~G~~V~VlEr~~~~   84 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRA--GGVGALVLEKLVEP   84 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHH--TTCCEEEEBSCSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEcCCCCC
Confidence            34699999999999999999999  89999999997554

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.54  E-value=8.1e-08  Score=71.55  Aligned_cols=48  Identities=17%  Similarity=0.381  Sum_probs=38.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCcc-CcCeeee
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSD-GAAGLFE   76 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~-~~~g~~~   76 (90)
                      ..||+|||+|++|+++|+.|++  .|.+|+|+||....++.+. ..+|+..
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~--~G~~V~vlEK~~~~~g~s~~a~GGi~~   55 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQ--SGQTCALLSKVFPTRSHTVSAQGGITV   55 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCGGGSGGGGCCSCEEC
T ss_pred             cCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCcchhhCCccEE
Confidence            4699999999999999999999  8999999999865544443 4445443

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.54  E-value=8e-08  Score=72.22  Aligned_cols=50  Identities=20%  Similarity=0.371  Sum_probs=39.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCc-Ceeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGA-AGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~-~g~~~~   77 (90)
                      ...||+|||+|++|+++|+.|++  .|.+|+|+||....++.+..+ +|+...
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~--~G~~V~vlEK~~~~~g~s~~a~GGi~a~   67 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSE--AGFNTACVTKLFPTRSHTVAAQGGINAA   67 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCGGGSGGGGCCSCEECC
T ss_pred             ccCCEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCCCCchhhCCCcEec
Confidence            34699999999999999999999  899999999986555554444 444443

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.53  E-value=1.1e-07  Score=67.98  Aligned_cols=38  Identities=26%  Similarity=0.490  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      ...||+|||+|++||++|+.|++  .|.+|+|+|+....+
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~--~g~~v~v~E~~~~~G   52 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRS--RGTDAVLLESSARLG   52 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHT--TTCCEEEECSSSSSB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH--CCCCEEEEEcCCCCC
Confidence            34699999999999999999999  899999999986553

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.53  E-value=1.6e-07  Score=66.91  Aligned_cols=38  Identities=32%  Similarity=0.503  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC-CCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK-FNMD   65 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~-~~~~   65 (90)
                      ...+|+|||+|++||.+|+.|.+  .|.+|+|+|++ ...+
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~--~G~~V~VlE~~~~~vG   81 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTR--AGHDVTILEANANRVG   81 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHH--TSCEEEEECSCSSCCB
T ss_pred             CCceEEEECCCHHHHHHHHHHHH--CCCcEEEEeccccccC
Confidence            45799999999999999999999  89999999997 5543

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.53  E-value=1.1e-07  Score=67.51  Aligned_cols=38  Identities=18%  Similarity=0.377  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCC-CCcEEEEccCCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADKFNMDT   66 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~-g~~v~vie~~~~~~~   66 (90)
                      ..|++|||+|++|+++|+.|++  . |.+|+|+|++...++
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~--~~g~~v~v~E~~~~~GG   45 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVAT--QLDKRVLVLERRPHIGG   45 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHH--HSCCCEEEECSSSSSSG
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--hCCCCEEEEeCCCCCCC
Confidence            5799999999999999999999  6 899999999865543

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.53  E-value=1.4e-07  Score=65.88  Aligned_cols=36  Identities=22%  Similarity=0.483  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ..||+|||+|++|+++|+.|++  .|.+|+|+|+...+
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~--~G~~v~viE~~~~~   46 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQ--NGWDVRLHEKSSEL   46 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCC
Confidence            4699999999999999999999  89999999997654

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.53  E-value=8.8e-08  Score=68.48  Aligned_cols=36  Identities=25%  Similarity=0.483  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCC--CcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPN--CDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g--~~v~vie~~~~~   64 (90)
                      ..||+|||+|++|+++|+.|++  .|  .+|+|+|++...
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~--~g~~~~v~v~E~~~~~   41 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAER--AFPDLNITLLEAGERL   41 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHH--HCTTSEEEEECSSSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHH--hCCCCCEEEEECCCCC
Confidence            4699999999999999999999  67  999999997554

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.52  E-value=3.5e-08  Score=70.34  Aligned_cols=36  Identities=31%  Similarity=0.381  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      .+||+|||+|++|+++|+.|++  .|.+|+|+|+...+
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~--~G~~V~vlEk~~~~   39 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAK--LGKSVTVFDNGKKI   39 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHh--CCCCEEEEeCCCCC
Confidence            4799999999999999999999  89999999998644

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.52  E-value=1.2e-07  Score=64.59  Aligned_cols=35  Identities=20%  Similarity=0.237  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+||+|||+|++|+.+|+.|++  .+.+|+|+|+...
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~   39 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGM--RGLSFRFVDPLPE   39 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSS
T ss_pred             cCcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCC
Confidence            4699999999999999999998  7999999999743

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.51  E-value=1.5e-07  Score=67.66  Aligned_cols=39  Identities=33%  Similarity=0.496  Sum_probs=34.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ...||+|||+|++||++|+.|++  .|.+|+|+|+....++
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~--~g~~v~v~E~~~~~GG   50 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEGKAGG   50 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHT--TSCEEEEECSSSSSCS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCcEEEEEeCCCCCC
Confidence            34799999999999999999999  8999999999866543

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.51  E-value=1.5e-07  Score=68.66  Aligned_cols=37  Identities=35%  Similarity=0.386  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...||+|||+|++|+++|+.|++  .|.+|+|+|+...+
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~--~G~~v~vlE~~~~~   47 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRL--GGVDVMVLEQLPQR   47 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCC
Confidence            45799999999999999999999  89999999997544

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.50  E-value=1.3e-07  Score=63.03  Aligned_cols=33  Identities=30%  Similarity=0.467  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +||+|||+|++|+.+|..|++  .+.+|+|+|++.
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~   35 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGR--ARKNILLVDAGE   35 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCC
Confidence            689999999999999999999  799999999864

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.48  E-value=1.6e-07  Score=68.43  Aligned_cols=36  Identities=14%  Similarity=0.098  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ..||+|||+|++|+++|+.|++  .|.+|+|+|+...+
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~--~G~~V~liE~~~~~   42 (512)
T 3e1t_A            7 VFDLIVIGGGPGGSTLASFVAM--RGHRVLLLEREAFP   42 (512)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHh--CCCCEEEEccCCCC
Confidence            4799999999999999999999  89999999998543

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.48  E-value=1.6e-07  Score=63.18  Aligned_cols=33  Identities=27%  Similarity=0.293  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+||+|||+|++|+.+|+.|++  .+.+|+|+|++
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~   47 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSAR--YMLKTLVIGET   47 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             ccCEEEECccHHHHHHHHHHHH--CCCcEEEEecc
Confidence            4799999999999999999999  79999999986

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.48  E-value=1.7e-07  Score=67.42  Aligned_cols=37  Identities=16%  Similarity=0.355  Sum_probs=33.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      .||+|||+|++||++|+.|.+  .|.+|+|+|++...++
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~--~g~~v~v~E~~~~~GG   76 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTV--AGFKTLLLEARDRIGG   76 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHH--TTCCEEEECSSSBSBT
T ss_pred             CCEEEECCcHHHHHHHHHHHH--CCCCEEEEeCCCCCCC
Confidence            699999999999999999999  8999999999865543

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.47  E-value=1.4e-07  Score=64.18  Aligned_cols=36  Identities=22%  Similarity=0.375  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      .+||+|||+|++|+.+|..|++  .+.+|+|+|+....
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~--~g~~v~vie~~~~~   38 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRR--SGLSYVILDAEASP   38 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--SSCCEEEECCSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCC
Confidence            3689999999999999999999  89999999997543

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.46  E-value=2.4e-07  Score=70.10  Aligned_cols=46  Identities=17%  Similarity=0.272  Sum_probs=37.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhh----CCCCcEEEEccCCCCCCCccCcCe
Q psy1704          27 NHKVAILGAGIIGLSTALELQRR----FPNCDVTVIADKFNMDTTSDGAAG   73 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~----~~g~~v~vie~~~~~~~~s~~~~g   73 (90)
                      .+||+|||+|++|+++|+.|++.    .+|.+|+|+||....+..+. ++|
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~s~s~-AqG   71 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGAV-AQG   71 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTTCSTT-TTC
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCCCccc-ccC
Confidence            47999999999999999999982    12899999999876555554 455

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.45  E-value=2.5e-07  Score=61.10  Aligned_cols=33  Identities=30%  Similarity=0.439  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|++|||+|++|+.+|..|++  .+.+|+|+|+.
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~--~g~~v~lie~~   35 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQ--KGVRVGLLTQS   35 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESC
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEecC
Confidence            4799999999999999999999  89999999986

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.45  E-value=2.3e-07  Score=68.32  Aligned_cols=36  Identities=28%  Similarity=0.442  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ..||+|||+|++|+++|+.|++  .|.+|+|+|+...+
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~--~G~~V~vlEr~~~~   61 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAH--RQVGHLVVEQTDGT   61 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCC
Confidence            4699999999999999999999  89999999997543

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.45  E-value=2.6e-07  Score=63.83  Aligned_cols=36  Identities=19%  Similarity=0.311  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+||+|||+|++|+.+|+.|++  .+.+|+|||+...
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~   48 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGM--NNISCRIIESMPQ   48 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCC
Confidence            35799999999999999999999  8999999999743

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.45  E-value=3e-07  Score=68.06  Aligned_cols=49  Identities=22%  Similarity=0.310  Sum_probs=41.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ..||+|||+|++|+.+|+.|.+  .|.+|+|+|+....++.+..++|.++.
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~--~g~~v~~~e~~~~~~~~~~~a~gg~~~  174 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARD--AGAKVILLEKEPIPGGNTKLAAGGMNA  174 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHS--SSCCEEEECSSSSSCTTGGGCCSCEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCcchhhhCCeeEc
Confidence            4699999999999999999999  899999999987776666666665543

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.44  E-value=4.2e-07  Score=65.01  Aligned_cols=37  Identities=35%  Similarity=0.418  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~~~~   64 (90)
                      ...||+|||||++|+++|..|++  .|.  +|+|||+....
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~--~G~~~~V~v~E~~~~~   43 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLA--EKAFDQVTLFERRGSP   43 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHT--TTCCSEEEEECSSSSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHh--cCCCCCeEEEecCCCC
Confidence            34699999999999999999999  788  99999997543

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.44  E-value=2.9e-07  Score=66.02  Aligned_cols=38  Identities=21%  Similarity=0.304  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      ...|++|||+|++|+++|+.|++  .|.+|+|+|+....+
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~--~g~~v~v~E~~~~~G   65 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLAS--SGQRVLIVDRRPHIG   65 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHH--CCCceEEEeccCCCC
Confidence            45799999999999999999999  799999999975543

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.44  E-value=2e-07  Score=67.47  Aligned_cols=37  Identities=16%  Similarity=0.253  Sum_probs=31.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ++.+|++|||+|++|+.+|..|++  .|.+|+|+|+...
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~--~G~~V~liEk~~~   59 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQ--LGMKVAVVEKRST   59 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCC
Confidence            345899999999999999999999  8999999998643

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.44  E-value=1.6e-07  Score=70.16  Aligned_cols=47  Identities=26%  Similarity=0.464  Sum_probs=36.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCC--CcEEEEccCCCCCCCc-cCcCeee
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPN--CDVTVIADKFNMDTTS-DGAAGLF   75 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g--~~v~vie~~~~~~~~s-~~~~g~~   75 (90)
                      ..||+|||+|++|+++|+.|++  .|  .+|+|+||....+..+ ...+|+.
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~--~G~~~~V~vlEk~~~~~~~s~~a~GGi~   54 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQ--ANPNAKIALISKVYPMRSHTVAAEGGSA   54 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH--HCTTCCEEEEESSCGGGSGGGGCCSCEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--cCCCCcEEEEeCCCCCCChHHHhcCccE
Confidence            3699999999999999999998  67  9999999976544433 3344444

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.44  E-value=3.6e-07  Score=66.86  Aligned_cols=38  Identities=24%  Similarity=0.338  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhC-CCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRF-PNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~-~g~~v~vie~~~~~   64 (90)
                      ..||+|||||++|+++|+.|++.. .|.+|+|+|+...+
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~   43 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIP   43 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCC
Confidence            469999999999999999999854 58999999996543

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.43  E-value=2.6e-07  Score=65.40  Aligned_cols=41  Identities=27%  Similarity=0.400  Sum_probs=34.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTT   67 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~   67 (90)
                      .+||+|||+|++|+.+|+.|+++.+|.+|+|+|+...+++.
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg  119 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGG  119 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCc
Confidence            47999999999999999999984338999999998655443

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.43  E-value=2.8e-07  Score=62.32  Aligned_cols=35  Identities=26%  Similarity=0.310  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+||+|||+|++|+.+|+.|++  .+.+|+|+|+.+.
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~   41 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGM--RQASVKIIESLPQ   41 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSS
T ss_pred             cceEEEECCCHHHHHHHHHHHH--CCCCEEEEEcCCC
Confidence            3699999999999999999999  8999999999753

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.42  E-value=2.1e-07  Score=65.13  Aligned_cols=36  Identities=25%  Similarity=0.419  Sum_probs=31.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ||+|||||++|+++|+.|++..+|.+|+|+|+...+
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            799999999999999999993339999999997544

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.42  E-value=3.1e-07  Score=66.08  Aligned_cols=36  Identities=19%  Similarity=0.257  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      .+|++|||+|++|+.+|+.|++  .|.+|+|+|++...
T Consensus         3 ~~DVvVIGgG~aGl~aA~~la~--~G~~V~liEk~~~~   38 (476)
T 3lad_A            3 KFDVIVIGAGPGGYVAAIKSAQ--LGLKTALIEKYKGK   38 (476)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH--HTCCEEEEECCBCT
T ss_pred             cCCEEEECcCHHHHHHHHHHHh--CCCEEEEEeCCCcc
Confidence            4799999999999999999999  79999999997543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.42  E-value=4.4e-07  Score=65.04  Aligned_cols=37  Identities=24%  Similarity=0.645  Sum_probs=32.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      .||+|||+|++|+++|..|++..++.+|+|||++...
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   39 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATV   39 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            5899999999999999999985458999999998643

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.41  E-value=2.7e-07  Score=64.88  Aligned_cols=43  Identities=30%  Similarity=0.345  Sum_probs=35.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDG   70 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~   70 (90)
                      .||+|||+|++|+.+|+.|++..++.+|+|+|+...+++..+.
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~  108 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL  108 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccc
Confidence            4899999999999999999983238999999998766544443

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.41  E-value=2.6e-07  Score=62.88  Aligned_cols=33  Identities=24%  Similarity=0.432  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|++|||+|++|+.+|..|++  .|.+|+|+|+.
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~   40 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGR--AQLSTLILEKG   40 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--cCCcEEEEeCC
Confidence            4699999999999999999999  79999999997

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.41  E-value=2.6e-07  Score=62.80  Aligned_cols=34  Identities=29%  Similarity=0.512  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+|++|||+|++|+.+|+.|++  .|.+|+|+|+.
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~   48 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAAR--SGFSVAILDKA   48 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHh--CCCcEEEEeCC
Confidence            45799999999999999999999  89999999985

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.39  E-value=5.2e-07  Score=66.38  Aligned_cols=39  Identities=23%  Similarity=0.294  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhC-CCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRF-PNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~-~g~~v~vie~~~~~   64 (90)
                      ...||+|||||++|+++|+.|++.. .|.+|+|||+...+
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~   63 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIP   63 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Confidence            3579999999999999999999855 58999999997543

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.39  E-value=6.6e-07  Score=64.09  Aligned_cols=39  Identities=13%  Similarity=0.073  Sum_probs=34.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ..+|++|||+|++|+.+|..|++  .|.+|+|+|++...++
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~--~g~~v~~~e~~~~~gg   43 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSV--NGKKVLHMDRNPYYGG   43 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCccc
Confidence            35799999999999999999999  8999999999865544

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.38  E-value=4.2e-07  Score=64.30  Aligned_cols=36  Identities=25%  Similarity=0.432  Sum_probs=32.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      .+++|||+|++|+.+|+.|.+  .|.+|+|+|++...+
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~--~g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAE--KGHQVHIIDQRDHIG   39 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCcEEEEEecCCcC
Confidence            589999999999999999999  789999999976543

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.38  E-value=5e-07  Score=65.67  Aligned_cols=38  Identities=24%  Similarity=0.269  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFNMD   65 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~~~~   65 (90)
                      ...|++|||+|++|+++|+.|.+  .| .+|+|+|++...+
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~--~g~~~v~v~E~~~~~G   46 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTE--LGYKNWHLYECNDTPG   46 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHH--TTCCSEEEEESSSSSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHH--cCCCCEEEEeCCCCCC
Confidence            45799999999999999999999  77 7999999986553

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.38  E-value=3.5e-07  Score=64.32  Aligned_cols=37  Identities=30%  Similarity=0.424  Sum_probs=32.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      .|++|||+|++|+++|+.|++  .|.+|+|+|++...++
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~--~g~~v~v~E~~~~~GG   38 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKK--LNKKVLVIEKRNHIGG   38 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGG--GTCCEEEECSSSSSSG
T ss_pred             CCEEEECcCHHHHHHHHHHHh--CCCcEEEEecCCCCCc
Confidence            489999999999999999999  7999999999765433

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.38  E-value=3.6e-07  Score=66.07  Aligned_cols=33  Identities=15%  Similarity=0.217  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|++|||+|++|+++|+.|++  .|.+|+|+|+.
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~--~G~~V~liEk~   58 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGA--LGKRVAIAEEY   58 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             CCCEEEECcCHHHHHHHHHHHh--CcCEEEEEeCC
Confidence            5799999999999999999999  89999999994

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.37  E-value=5.4e-07  Score=66.57  Aligned_cols=36  Identities=19%  Similarity=0.344  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ...||+|||+|++|+.+|..|++  .|.+|+|||++..
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~--~g~~v~iiE~~~~   43 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQ--AGMKVLGIEAGED   43 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHh--CCCCEEEEeCCCC
Confidence            34799999999999999999999  8999999999743

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.37  E-value=4.5e-07  Score=66.46  Aligned_cols=41  Identities=20%  Similarity=0.178  Sum_probs=35.2

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          23 VMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        23 ~~~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      .+...+|++|||+|++|+.+|+.|++  .|.+|+++|++...+
T Consensus        16 ~~~~~~dv~iiG~G~~g~~~a~~l~~--~g~~v~~~e~~~~~G   56 (475)
T 3p1w_A           16 FQGEHYDVIILGTGLKECILSGLLSH--YGKKILVLDRNPYYG   56 (475)
T ss_dssp             -CCCEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSC
T ss_pred             cccccCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeccCCCC
Confidence            34456899999999999999999999  899999999986543

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.36  E-value=4.4e-07  Score=62.47  Aligned_cols=34  Identities=38%  Similarity=0.614  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      .+||+|||+|++|+.+|..|++  .+. +|+|||++.
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~--~g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKD--FGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHH--cCCCcEEEEecCC
Confidence            3689999999999999999999  788 999999974

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.36  E-value=3.5e-07  Score=62.96  Aligned_cols=37  Identities=27%  Similarity=0.245  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHh-hCCCCcEEEEccCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQR-RFPNCDVTVIADKFNM   64 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~-~~~g~~v~vie~~~~~   64 (90)
                      .||+|||+|++|+++|+.|++ ...|.+|+|+|+....
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~   39 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDS   39 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCC
Confidence            489999999999999999987 2247899999997543

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.36  E-value=4.5e-07  Score=65.26  Aligned_cols=38  Identities=34%  Similarity=0.429  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ..||+|||+|++|+.+|+.|++  .|.+|+|+|+....++
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~--~g~~v~vlE~~~~~gg   70 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAG--AGHQVTVLEASERPGG   70 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHH--HTCEEEEECSSSSSBT
T ss_pred             CCCEEEECCCHHHHHHHHHHHh--CCCeEEEEECCCCCCC
Confidence            4699999999999999999999  7999999999765443

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.35  E-value=7.8e-07  Score=64.88  Aligned_cols=37  Identities=30%  Similarity=0.518  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...||+|||||++|+.+|..|++  .|.+|+|+|+....
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~--~G~~V~liEk~~~~  127 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELAL--LGARVVLVEKRIKF  127 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCSSC
T ss_pred             CCCCEEEECccHHHHHHHHHHHH--CCCeEEEEEecccc
Confidence            45799999999999999999999  89999999997543

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.35  E-value=8.6e-07  Score=66.61  Aligned_cols=50  Identities=22%  Similarity=0.262  Sum_probs=37.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHH---hhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQ---RRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~---~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ..+||+|||+|++|+++|+.++   +. .|.+|+|+||....+.. ..++|.+..
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~-~G~~V~vlEK~~~~~s~-~~a~G~~~~   73 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKL-GGLKVTLVEKAAVERSG-AVAQGLSAI   73 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTT-TTCCEEEECSSCTTTCS-TTTTCEEEE
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhh-CCCeEEEEeCcCCCCCc-ceecccccc
Confidence            3479999999999999999998   21 58999999998654433 334555443

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.35  E-value=4.6e-07  Score=62.12  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+|++|||+|++|+.+|..|.+  .+.+|+|+|+.
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~   46 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAAR--AQLAPLVFEGT   46 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHH--TTCCCEEECCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecC
Confidence            45799999999999999999999  79999999975

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.35  E-value=9.9e-07  Score=63.92  Aligned_cols=36  Identities=31%  Similarity=0.370  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..++|+|||+|++|+.+|+.|++  .|.+|+|||+...
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~--~G~~V~v~e~~~~  156 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRA--KGYEVHVYDRYDR  156 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHH--HTCCEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCC
Confidence            45799999999999999999999  7899999999743

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.34  E-value=5e-07  Score=64.95  Aligned_cols=33  Identities=12%  Similarity=0.184  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|++|||+|++|+.+|+.|++  .|.+|+|+|+.
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~--~G~~V~liEk~   37 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAA--LGKKVAIAEEF   37 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHT--TTCCEEEEESS
T ss_pred             CCcEEEECcCHHHHHHHHHHHh--CCCEEEEEeCC
Confidence            4799999999999999999999  89999999994

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.34  E-value=3.6e-07  Score=65.81  Aligned_cols=34  Identities=26%  Similarity=0.375  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|++|||+|++|+.+|..|++  .|.+|+|+|+..
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~--~G~~V~liEk~~   37 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAK--AKYNVLMADPKG   37 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECTTS
T ss_pred             cceEEEECCCHHHHHHHHHHHh--CCCeEEEEECCC
Confidence            4799999999999999999999  899999999754

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.33  E-value=8.1e-07  Score=64.13  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+|++|||+|++|+.+|..|++  .|.+|+|+|+.
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~--~G~~V~liEk~   41 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVL--NGARVACLDFV   41 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCEEEEEEec
Confidence            45799999999999999999999  89999999963

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.33  E-value=1.1e-06  Score=64.30  Aligned_cols=36  Identities=11%  Similarity=0.062  Sum_probs=32.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+|++|||+|++|+.+|..|++  .|.+|+|||++.
T Consensus        41 ~~~~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE~~~   76 (523)
T 1mo9_A           41 PREYDAIFIGGGAAGRFGSAYLRA--MGGRQLIVDRWP   76 (523)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence            345799999999999999999999  799999999975

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.32  E-value=2.6e-07  Score=62.89  Aligned_cols=32  Identities=19%  Similarity=0.332  Sum_probs=30.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD   60 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~   60 (90)
                      .+||+|||+|++|+.+|+.|++  .+.+|+|+|+
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~--~g~~v~lie~   39 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAAR--AELKPLLFEG   39 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCCEEECC
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCeEEEEec
Confidence            4699999999999999999999  7999999998

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.31  E-value=7.7e-07  Score=63.94  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|++|||+|++|+.+|..|++  .|.+|+|+|++.
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~~   37 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVE--QGAQVTLIERGT   37 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCC
Confidence            4799999999999999999999  899999999873

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.31  E-value=9e-07  Score=64.98  Aligned_cols=36  Identities=28%  Similarity=0.366  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ...||+|||+|++|+.+|..|++  .|.+|+|+|++..
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~--~G~~v~iiE~~~~   50 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRE--LGRSVHVIETAGD   50 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHh--CCCCEEEEeCCCC
Confidence            34699999999999999999999  7999999999754

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.31  E-value=1e-06  Score=65.53  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...||+|||+|++|+.+|+.|++  .|.+|+|+|+..
T Consensus       106 ~~~DVVIVGgGpaGL~aA~~La~--~G~kV~VlEr~~  140 (549)
T 3nlc_A          106 LTERPIVIGFGPCGLFAGLVLAQ--MGFNPIIVERGK  140 (549)
T ss_dssp             CCCCCEEECCSHHHHHHHHHHHH--TTCCCEEECSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCeEEEEEccC
Confidence            34799999999999999999999  899999999874

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.31  E-value=5.2e-07  Score=64.89  Aligned_cols=36  Identities=28%  Similarity=0.415  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+|+|||+|++|+++|..|++..++.+|+|||+++.
T Consensus         4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~   39 (472)
T 3iwa_A            4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASR   39 (472)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC--
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCc
Confidence            589999999999999999998545899999999754

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.30  E-value=3.3e-07  Score=66.38  Aligned_cols=36  Identities=33%  Similarity=0.430  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhC-CCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRF-PNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~-~g~~v~vie~~~~   63 (90)
                      .||+|||||++|+++|+.|++.. .|.+|+|+|+...
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            58999999999999999998833 4789999999754

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.30  E-value=3.6e-07  Score=61.78  Aligned_cols=33  Identities=30%  Similarity=0.445  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+||+|||+|++|+++|+.|++  .+.+|+|+|+.
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~   37 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGM   37 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT--TTCCCEEECCS
T ss_pred             cCCEEEECcCHHHHHHHHHHHH--CCCcEEEEccC
Confidence            4699999999999999999999  79999999975

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.29  E-value=1.5e-06  Score=65.51  Aligned_cols=35  Identities=31%  Similarity=0.389  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+||+|||+|++|+.+|+.|++  .|.+|+|+|++.
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~--~G~~V~liE~~~  424 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGV--RGYDVVLAEAGR  424 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence            34799999999999999999999  799999999974

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.29  E-value=4.9e-07  Score=60.70  Aligned_cols=33  Identities=33%  Similarity=0.379  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEE-EccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTV-IADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~v-ie~~   61 (90)
                      .+||+|||+|++|+.+|..|++  .+.+|+| +|+.
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~li~e~~   37 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATR--GGLKNVVMFEKG   37 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--HTCSCEEEECSS
T ss_pred             CceEEEECCCHHHHHHHHHHHH--CCCCeEEEEeCC
Confidence            4699999999999999999999  7899999 9984

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.29  E-value=9.5e-07  Score=55.66  Aligned_cols=33  Identities=36%  Similarity=0.450  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ++++|||+|++|+.+|..|.+  .+.+|+++|+.+
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~--~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLAR--AGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCC
Confidence            489999999999999999999  899999999874

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.29  E-value=1e-06  Score=62.96  Aligned_cols=35  Identities=31%  Similarity=0.660  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ++|+|||+|++|+.+|..|++..++.+|+|||+++
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~   37 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRP   37 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCC
Confidence            57999999999999999999865678999999874

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.29  E-value=1.6e-06  Score=64.92  Aligned_cols=37  Identities=27%  Similarity=0.393  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ..||+|||||++|+++|+.|++. .|.+|+|+|+...+
T Consensus        32 ~~dVlIVGaGpaGL~~A~~La~~-~G~~V~viEr~~~~   68 (639)
T 2dkh_A           32 QVDVLIVGCGPAGLTLAAQLAAF-PDIRTCIVEQKEGP   68 (639)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTC-TTSCEEEECSSSSC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHh-CCCCEEEEeCCCCC
Confidence            46999999999999999999872 38999999997544

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.29  E-value=6.8e-07  Score=66.00  Aligned_cols=36  Identities=14%  Similarity=0.168  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHH-hhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQ-RRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~-~~~~g~~v~vie~~~~~   64 (90)
                      ..||+|||||++|+.+|..|+ +  .|.+|+|+|++...
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~--~G~~v~viE~~~~~   44 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHE--LGLTTVGFDKADGP   44 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHc--CCCCEEEEECCCCC
Confidence            469999999999999999999 7  79999999997543

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.29  E-value=7.4e-07  Score=64.05  Aligned_cols=35  Identities=11%  Similarity=0.229  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+|++|||+|++|+.+|..|++  .|.+|+|+|+++.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~~~   36 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQ--LGMKTACVEKRGA   36 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCC
Confidence            3689999999999999999999  7999999999743

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.29  E-value=9.6e-07  Score=61.92  Aligned_cols=36  Identities=28%  Similarity=0.384  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .++|+|||+|++|+.+|..|++..++.+|+|||+++
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~   37 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNE   37 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCC
Confidence            368999999999999999998865667999999864

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.28  E-value=1.1e-06  Score=64.74  Aligned_cols=38  Identities=18%  Similarity=0.234  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      +..+|+|||+|++|+++|..|++..++.+|+|||++..
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~   72 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEY   72 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSC
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCC
Confidence            44799999999999999999998545899999999754

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.28  E-value=7e-07  Score=65.23  Aligned_cols=38  Identities=26%  Similarity=0.324  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhC----------CCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRF----------PNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~----------~g~~v~vie~~~~~   64 (90)
                      ..||+|||||++|+++|..|++..          .|.+|+|+|+...+
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~   54 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVA   54 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCC
Confidence            469999999999999999998832          58999999987543

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.28  E-value=9e-07  Score=59.69  Aligned_cols=32  Identities=28%  Similarity=0.416  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      +|++|||+|++|+.+|..|++  .+. +|+|+|++
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~--~g~~~v~lie~~   34 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATR--GGVKNAVLFEKG   34 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCSSEEEECSS
T ss_pred             ceEEEECccHHHHHHHHHHHH--CCCCcEEEEcCC
Confidence            589999999999999999999  799 99999986

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.28  E-value=9.2e-07  Score=65.40  Aligned_cols=36  Identities=22%  Similarity=0.354  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ...||+|||+|++|+.+|..|++  .|.+|+|||++..
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~--~G~~v~iiE~~~~   55 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRS--QGLTVRAFEAASG   55 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSS
T ss_pred             CCCCEEEECchHHHHHHHHHHHh--CCCCEEEEeCCCC
Confidence            34699999999999999999999  8999999999643

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.28  E-value=1.1e-06  Score=62.78  Aligned_cols=37  Identities=35%  Similarity=0.460  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+|+|||+|++|+.+|..|++..++.+|+|+|++..
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~   39 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEW   39 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCc
Confidence            3699999999999999999998545889999999753

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.28  E-value=9.1e-07  Score=63.78  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|++|||+|++|+.+|..|++  .|.+|+|||++
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~--~g~~V~liE~~   36 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAA--FGKRVALIESK   36 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             cCcEEEECCCHHHHHHHHHHHh--CCCcEEEEcCC
Confidence            4799999999999999999999  89999999997

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.27  E-value=6.6e-07  Score=64.46  Aligned_cols=35  Identities=17%  Similarity=0.263  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|++|||+|++|+.+|..|++  .|.+|+|+|++.
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~--~G~~V~liE~~~   53 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAE--LGARAAVVESHK   53 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecCC
Confidence            34799999999999999999999  899999999763

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.27  E-value=1.3e-06  Score=63.37  Aligned_cols=38  Identities=16%  Similarity=0.297  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhC-CCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRF-PNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~-~g~~v~vie~~~~   63 (90)
                      +.+|++|||+|++|+.+|..|++.. ++.+|+|||++..
T Consensus        34 m~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~   72 (490)
T 2bc0_A           34 WGSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSN   72 (490)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCC
Confidence            3579999999999999999999831 2389999999753

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.26  E-value=1e-06  Score=62.30  Aligned_cols=36  Identities=31%  Similarity=0.429  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCc--EEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCD--VTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~--v~vie~~~~   63 (90)
                      +.++|+|||+|++|+++|..|++  .+.+  |+|+|+++.
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~--~g~~~~V~lie~~~~   45 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQ--NGFEGRVLVIGREPE   45 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--TTCCSCEEEEESSSS
T ss_pred             CCCcEEEECChHHHHHHHHHHHc--cCcCCCEEEEecCCC
Confidence            35799999999999999999999  6665  999999753

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.26  E-value=5.9e-07  Score=65.27  Aligned_cols=34  Identities=26%  Similarity=0.383  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|++|||+|++|+.+|..|++  .|.+|+|+|++.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~--~G~~V~liE~~~   41 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKK--HTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT--TCSCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCC
Confidence            4799999999999999999999  899999999964

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.26  E-value=1.3e-06  Score=62.70  Aligned_cols=36  Identities=22%  Similarity=0.344  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      .+|++|||+|++|+.+|..|++  .|.+|+|+|+++..
T Consensus         6 ~~dvvIIGaG~aGl~aA~~l~~--~g~~V~liE~~~~~   41 (470)
T 1dxl_A            6 ENDVVIIGGGPGGYVAAIKAAQ--LGFKTTCIEKRGAL   41 (470)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCc
Confidence            4699999999999999999999  78999999997543

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.25  E-value=8.2e-07  Score=63.72  Aligned_cols=34  Identities=15%  Similarity=0.132  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|++|||+|++|+.+|..|++  .|.+|+|+|++.
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~liE~~~   37 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAM--YGQKCALIEAKE   37 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT--TTCCEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEcCCC
Confidence            4699999999999999999999  899999999973

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.25  E-value=1.1e-06  Score=63.84  Aligned_cols=34  Identities=21%  Similarity=0.348  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|++|||+|++|+.+|..|++  .|.+|+|+|++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~--~g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAAR--HNAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCC
Confidence            3699999999999999999999  799999999974

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.24  E-value=9.5e-07  Score=63.85  Aligned_cols=35  Identities=14%  Similarity=0.222  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|++|||+|++|+.+|..|++  .|.+|+|||++.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~--~g~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAAS--YGAKTLLVEAKA   44 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--TSCCEEEEESSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHH--CCCcEEEEeCCC
Confidence            34799999999999999999999  899999999973

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.24  E-value=6.7e-07  Score=63.80  Aligned_cols=36  Identities=19%  Similarity=0.260  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCC-----CcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPN-----CDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g-----~~v~vie~~~~~   64 (90)
                      .+||+|||+|++|+++|..|++  .+     .+|+|||+.+..
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~--~g~~~~~~~v~liE~~~~~   70 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQE--RAQAQGALEVLFLDKQGDY   70 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHH--HHHHHCCCCEEEEESCSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--cccccCcccEEEEecCCCC
Confidence            3599999999999999999998  67     899999998643

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.24  E-value=1.4e-06  Score=62.96  Aligned_cols=34  Identities=24%  Similarity=0.278  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+|++|||+|++|+.+|..|++  .|.+|+|+|+.
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~--~G~~V~liEk~   38 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQ--LGKKVAVADYV   38 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEEec
Confidence            34799999999999999999999  89999999984

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.23  E-value=1e-06  Score=63.67  Aligned_cols=35  Identities=23%  Similarity=0.310  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+|++|||+|++|+.+|..|++  .|.+|+|+|++..
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~--~G~~V~liE~~~~   40 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAAD--EGLKVAIVERYKT   40 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCC
Confidence            4699999999999999999999  8999999999643

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.22  E-value=1.8e-06  Score=61.91  Aligned_cols=37  Identities=24%  Similarity=0.479  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNMD   65 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~~~~   65 (90)
                      ..||+|||+|++|+.+|+.|.+  .|. +|+|+|+....+
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~--~g~~~v~~~e~~~~~g   41 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSE--AGITDLLILEATDHIG   41 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHH--TTCCCEEEECSSSSSB
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--cCCCceEEEeCCCCCC
Confidence            4689999999999999999999  788 899999976543

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.22  E-value=9.9e-07  Score=63.47  Aligned_cols=35  Identities=17%  Similarity=0.301  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+|++|||+|++|+.+|..|++  .|.+|+|+|+++.
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~liE~~~~   40 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQ--LGFKTVCIEKNET   40 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCC
Confidence            4699999999999999999999  7999999999743

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.21  E-value=1.1e-06  Score=63.03  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|++|||+|++|+.+|..|++  .|.+|+|+|++
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~--~G~~V~liE~~   35 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQ--LGLSTAIVEPK   35 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence            3689999999999999999999  79999999997

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.21  E-value=1.9e-06  Score=63.02  Aligned_cols=35  Identities=26%  Similarity=0.244  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|++|||+|++|+.+|..|++  .|.+|+|+|+.+
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~--~G~~V~liEk~~   65 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQ--YGKKVMVLDFVT   65 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeccC
Confidence            35799999999999999999999  899999999864

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.20  E-value=2.5e-06  Score=63.09  Aligned_cols=34  Identities=18%  Similarity=0.284  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+|++|||+|++|+.+|..|++  .|.+|+|+|+.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~--~g~~v~liE~~  139 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAK--YGAKTAVLDYV  139 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCC
T ss_pred             ccccEEEECCCccHHHHHHHHHh--CCCeEEEEecc
Confidence            34799999999999999999999  79999999973

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.20  E-value=1.7e-06  Score=58.35  Aligned_cols=32  Identities=22%  Similarity=0.384  Sum_probs=29.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|++|||+|++|+.+|..|++  .+.+|+|+|+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~--~g~~v~li~~~   33 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSAR--KGIRTGLMGER   33 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT--TTCCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCC
Confidence            589999999999999999999  89999999864

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.19  E-value=1.5e-06  Score=62.29  Aligned_cols=33  Identities=21%  Similarity=0.306  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|++|||+|++|+.+|..|++  .|.+|+|+|++.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~--~g~~V~lie~~~   34 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQ--LGMKVGVVEKEK   34 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSS
T ss_pred             CCEEEECCChhHHHHHHHHHH--CCCeEEEEeCCC
Confidence            589999999999999999999  799999999974

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.18  E-value=2e-06  Score=64.48  Aligned_cols=37  Identities=27%  Similarity=0.245  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      .+|++|||+|++|+.+|+.|++  .|.+|+|+|+....+
T Consensus        46 ~~dvvIIG~G~aGl~aA~~l~~--~G~~V~liE~~~~~g   82 (623)
T 3pl8_A           46 KYDVVIVGSGPIGCTYARELVG--AGYKVAMFDIGEIDS   82 (623)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCCCS
T ss_pred             cCCEEEECCcHHHHHHHHHHHh--CCCcEEEEeccCCCC
Confidence            4799999999999999999999  899999999975443

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.17  E-value=1.6e-06  Score=62.37  Aligned_cols=34  Identities=21%  Similarity=0.412  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|++|||+|++|+.+|..|++  .|.+|+|+|++.
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE~~~   38 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQ--LGFNTACVEKRG   38 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence            4699999999999999999999  799999999954

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.17  E-value=1e-06  Score=63.88  Aligned_cols=36  Identities=33%  Similarity=0.421  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCC-CCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~-g~~v~vie~~~   62 (90)
                      .+|++|||+|++|+++|+.|++..+ |.+|+|||++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            3689999999999999999999433 89999999975

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.16  E-value=2.7e-06  Score=60.09  Aligned_cols=33  Identities=30%  Similarity=0.510  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~~   62 (90)
                      ++|+|||+|++|+++|..|++  .|.  +|+|||+++
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~--~g~~~~V~lie~~~   36 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQ--AKYPGRIALINDEK   36 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTCCSCEEEECCSS
T ss_pred             CCEEEEcChHHHHHHHHHHHh--hCcCCCEEEEeCCC
Confidence            589999999999999999999  666  899999975

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.16  E-value=2.4e-06  Score=60.49  Aligned_cols=36  Identities=33%  Similarity=0.380  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+.+|+|||+|++|+.+|..|..  .+.+|+|||+++.
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~--~~~~itlie~~~~   43 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALG--KCDDITMINSEKY   43 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTT--TCSCEEEECSSSS
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhC--CCCEEEEEECCCC
Confidence            45699999999999999999966  7899999999754

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.16  E-value=1.7e-06  Score=65.22  Aligned_cols=38  Identities=32%  Similarity=0.386  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhh---CCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRR---FPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~---~~g~~v~vie~~~~~   64 (90)
                      ..||+|||||++||++|+.|++.   ..|++|+|||+...+
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~   48 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   48 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC
Confidence            46999999999999999999871   138999999997543

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.16  E-value=3.4e-06  Score=64.10  Aligned_cols=35  Identities=26%  Similarity=0.271  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .++|+|||+|++|+.+|..|++  .|.+|+|||+...
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~--~G~~Vtlie~~~~  423 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLME--SGYTVHLTDTAEK  423 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCC
Confidence            4699999999999999999999  8999999999753

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.14  E-value=3.2e-06  Score=61.82  Aligned_cols=36  Identities=19%  Similarity=0.209  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ++|+|||+|++|+++|..|++..++.+|+|||+++.
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~   37 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEY   37 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCC
Confidence            489999999999999999998545889999999754

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.14  E-value=3.7e-06  Score=63.24  Aligned_cols=38  Identities=34%  Similarity=0.517  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      ..++|+|||+|++|+.+|+.|.+  .|.+|+|+|+....+
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~--~g~~v~~~e~~~~~g  143 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARDRVG  143 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHH--TTCEEEEECSSSSSB
T ss_pred             CCCeEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCC
Confidence            45799999999999999999999  899999999975543

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.13  E-value=2.8e-06  Score=60.82  Aligned_cols=33  Identities=21%  Similarity=0.341  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|++|||+|++|+.+|..|++  .|.+|+|+|++
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~   35 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQ--LGQKVTIVEKG   35 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence            3689999999999999999999  79999999997

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.13  E-value=2e-06  Score=66.22  Aligned_cols=39  Identities=36%  Similarity=0.462  Sum_probs=33.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ...||+|||+|++|+++|+.|.+  .|.+|+|+|+....++
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~--~g~~v~v~E~~~~~gg  373 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHN--FGIKVTVLEAKDRIGG  373 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSSSCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCcEEEEecccceec
Confidence            34799999999999999999999  7999999999755443

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.13  E-value=2.6e-06  Score=64.55  Aligned_cols=35  Identities=26%  Similarity=0.386  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+||+|||+|++|+.+|+.+++  .|.+|+|+|+..
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr--~G~kVlLIEk~~   54 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVAR--GGLHCLLITSDL   54 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCG
T ss_pred             CcCCEEEECccHHHHHHHHHHHH--CCCcEEEEEecc
Confidence            45799999999999999999999  899999999873

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.12  E-value=3.3e-06  Score=60.38  Aligned_cols=36  Identities=25%  Similarity=0.265  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      +|++|||+|++|+.+|..|++..++.+|+|+|++..
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~   36 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDN   36 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            389999999999999999998444899999999753

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.12  E-value=1.9e-06  Score=65.31  Aligned_cols=34  Identities=21%  Similarity=0.357  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+||+|||||++|+.+|+.+++  .|.+|+|+|+.
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr--~G~kVlLIEk~   60 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAAR--MGQQTLLLTHN   60 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESC
T ss_pred             CcCCEEEECChHHHHHHHHHHHh--CCCCEEEEeec
Confidence            35799999999999999999999  89999999986

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.12  E-value=3.9e-06  Score=59.98  Aligned_cols=34  Identities=26%  Similarity=0.585  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~~   62 (90)
                      .+|++|||+|++|+.+|..|++  .|.  +|+|+|++.
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~--~g~~~~V~lie~~~   39 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRA--SGWEGNIRLVGDAT   39 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSCC
T ss_pred             CCcEEEEcCHHHHHHHHHHHHc--cCcCCCEEEEECCC
Confidence            4699999999999999999999  666  799999864

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.11  E-value=4.9e-06  Score=62.54  Aligned_cols=35  Identities=26%  Similarity=0.411  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+||+|||+|++|+.+|..|++  .|.+|+|+|++..
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~--~g~~V~lie~~~~  407 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAA--RGHQVTLFDAHSE  407 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCC
Confidence            4699999999999999999999  7999999999754

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.10  E-value=2.6e-06  Score=60.05  Aligned_cols=35  Identities=34%  Similarity=0.393  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHh-hCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQR-RFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~-~~~g~~v~vie~~~   62 (90)
                      .+|+|||+|++|+.+|..|++ ...+.+|+|+|++.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~   37 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSR   37 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCC
Confidence            489999999999999999987 33578999999874

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.10  E-value=3.8e-06  Score=59.53  Aligned_cols=34  Identities=32%  Similarity=0.576  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCc--EEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCD--VTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~--v~vie~~~~   63 (90)
                      .+|+|||+|++|+.+|..|++  .+.+  |+|+|+++.
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~--~g~~~~V~li~~~~~   38 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRA--EGFEGRISLIGDEPH   38 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCCSEEEEEECSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHc--cCcCCeEEEEECCCC
Confidence            489999999999999999999  6665  999999754

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.09  E-value=5e-06  Score=64.60  Aligned_cols=38  Identities=34%  Similarity=0.517  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      ...+|+|||+|++||.+|+.|.+  .|.+|+|+|+....+
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~--~g~~v~v~E~~~~~G  314 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARDRVG  314 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCcCC
Confidence            45799999999999999999999  899999999976544

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.08  E-value=3.7e-06  Score=61.15  Aligned_cols=38  Identities=18%  Similarity=0.387  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..++++|||+|++|+.+|..|++...+.+|+|||++..
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~   47 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE   47 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSS
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            45799999999999999999987445889999999753

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.08  E-value=4.7e-06  Score=63.08  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+||+|||||++|+.+|+.+++  .|.+|+|+|+.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr--~G~kVlLIEk~   59 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAAR--MGAKTAMFVLN   59 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH--CCCCEEEEEec
Confidence            35799999999999999999999  89999999986

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.08  E-value=4.6e-06  Score=60.20  Aligned_cols=37  Identities=22%  Similarity=0.381  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhC-CCCc---EEEEccCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRF-PNCD---VTVIADKFNM   64 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~-~g~~---v~vie~~~~~   64 (90)
                      +||+|||||++|+++|..|++.. .|.+   |+|||+....
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~   43 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADW   43 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSS
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCC
Confidence            58999999999999999998621 3778   9999997543

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.08  E-value=4.5e-06  Score=59.61  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=31.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      |++|||+|++|+.+|..|++..++.+|+|+|++..
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~   36 (447)
T 1nhp_A            2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF   36 (447)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCc
Confidence            79999999999999999998444899999999753

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.07  E-value=4e-06  Score=60.38  Aligned_cols=34  Identities=15%  Similarity=0.219  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|++|||+|++|+.+|..|++  .+.+|+|+|++.
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~--~g~~V~lie~~~   39 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQ--LGLKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence            4799999999999999999999  799999999974

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.07  E-value=3.9e-06  Score=61.42  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+++|+|||+|++|+.+|..|.+  .+.+|+|||+++
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~--~~~~VtLId~~~   75 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDT--KKYNVSIISPRS   75 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCT--TTCEEEEEESSS
T ss_pred             CCCCEEEECCcHHHHHHHHHhhh--CCCcEEEECCCC
Confidence            34689999999999999999988  789999999874

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.07  E-value=3.9e-06  Score=60.75  Aligned_cols=37  Identities=27%  Similarity=0.394  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+|++|||+|.+|+.+|.+|++. ++.+|+|+|++..
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~-~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSED-PDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhC-CCCeEEEEcCCCC
Confidence            458999999999999999999862 5789999998754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.07  E-value=4.9e-06  Score=58.29  Aligned_cols=34  Identities=21%  Similarity=0.374  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCC--CcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPN--CDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g--~~v~vie~~~   62 (90)
                      .+|++|||+|++|+.+|..|++  .|  .+|+++|++.
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~--~g~~~~V~lie~~~   39 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRK--LDGETPLLMITADD   39 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHT--TCSSSCEEEECSSC
T ss_pred             CCcEEEECChHHHHHHHHHHHh--hCCCCCEEEEECCC
Confidence            4699999999999999999998  55  5799999863

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.06  E-value=3e-06  Score=60.91  Aligned_cols=33  Identities=15%  Similarity=0.288  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|++|||+|++|+.+|..|++  .|.+|+|+|++
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~--~g~~V~lie~~   37 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQ--LGIPTVLVEGQ   37 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH--HTCCEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCEEEEEccC
Confidence            4699999999999999999999  78999999984

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.06  E-value=5.5e-06  Score=60.75  Aligned_cols=36  Identities=22%  Similarity=0.192  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+|++|||+|++|+.+|.+|.+  .+.+|+|+|+...
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~--~g~~VlvlE~g~~   41 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSE--AGKKVLLLERGGP   41 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCCC
Confidence            45799999999999999999999  8999999999753

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.05  E-value=6.6e-06  Score=59.45  Aligned_cols=36  Identities=22%  Similarity=0.341  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .|++|||+|++|+.+|..|++..++.+|+|+|++..
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~   72 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEI   72 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            599999999999999999998544889999999754

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.02  E-value=5.6e-06  Score=58.06  Aligned_cols=33  Identities=36%  Similarity=0.439  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .|++|||+|++|+.+|..|++  .+ +|+|+|++..
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~--~g-~V~lie~~~~   41 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQ--TY-EVTVIDKEPV   41 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT--TS-EEEEECSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHhh--cC-CEEEEECCCC
Confidence            599999999999999999988  78 9999999754

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.00  E-value=7.1e-06  Score=61.24  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~~   63 (90)
                      ..+|++|||+|.+|+.+|.+|++  .+ .+|+|+|+...
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse--~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAE--NPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTT--STTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHh--CCCCcEEEEecCCC
Confidence            34799999999999999999998  55 79999999754

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.00  E-value=3.9e-06  Score=60.72  Aligned_cols=38  Identities=18%  Similarity=0.141  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh-hCC----CCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQR-RFP----NCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~-~~~----g~~v~vie~~~~~   64 (90)
                      .++|+|||+|++|+.+|..|.+ ..+    +.+|+|||+.+.+
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~   45 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   45 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCC
Confidence            4689999999999999999987 533    7899999997543

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.00  E-value=1.4e-05  Score=58.19  Aligned_cols=33  Identities=27%  Similarity=0.425  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .||+|||+|++|+.+|+.+++  .|.+|+|+|+++
T Consensus         2 ~dViVIGgG~AG~~AA~~la~--~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLR--LGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHH--CCCcEEEEeccC
Confidence            489999999999999999999  899999999875

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.00  E-value=4e-06  Score=60.96  Aligned_cols=34  Identities=38%  Similarity=0.536  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      +||+|||+|++|+++|+.|++  . .+|+|+|+++..
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~~--~-~~V~vie~~~~~  142 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQQ--Y-LTVALIEERGWL  142 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHTT--T-CCEEEECTTSSS
T ss_pred             CCEEEECccHHHHHHHHHHHh--c-CCEEEEeCCCCC
Confidence            589999999999999999999  6 999999997644

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.00  E-value=5.2e-06  Score=59.52  Aligned_cols=35  Identities=20%  Similarity=0.295  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ++|+|||+|++|+.+|..|++..+..+|+|||++.
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~   35 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDR   35 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence            37999999999999999999854456899999874

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.99  E-value=8.4e-06  Score=64.11  Aligned_cols=35  Identities=34%  Similarity=0.442  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~~   63 (90)
                      .+||+|||+|++|+.+|..|++  .|. +|+|||+...
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~--~G~~~Vtv~E~~~~  222 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLAR--LGYSDITIFEKQEY  222 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHH--TTCCCEEEEESSSS
T ss_pred             CCEEEEECccHHHHHHHHHHHh--cCCCcEEEEeCCCC
Confidence            4699999999999999999999  788 7999999643

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.99  E-value=7.4e-06  Score=59.98  Aligned_cols=34  Identities=21%  Similarity=0.353  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+|++|||+|++|+++|..|++  .|.+|+|+|+.
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~--~G~~v~lie~~  244 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSAR--KGIRTGLMGER  244 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             CcccEEEECCcHHHHHHHHHHHh--CCCeEEEEECC
Confidence            35799999999999999999999  89999999874

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.98  E-value=7.4e-06  Score=58.08  Aligned_cols=36  Identities=31%  Similarity=0.469  Sum_probs=30.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~~~   63 (90)
                      +.+|++|||+|++|+.+|..|++  .+.  +|+|+|++..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~--~g~~~~V~lie~~~~   43 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQ--AGYQGLITVVGDEAE   43 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHH--HTCCSCEEEEESSCS
T ss_pred             CCCcEEEECChHHHHHHHHHHHc--cCCCCeEEEEECCCC
Confidence            34699999999999999999998  455  6999999753

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.96  E-value=5.3e-06  Score=59.15  Aligned_cols=35  Identities=34%  Similarity=0.459  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhh-CCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRR-FPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~-~~g~~v~vie~~~   62 (90)
                      .+|+|||+|++|+.+|..|+++ ..+.+|+|||+++
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~   40 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISAND   40 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCC
Confidence            5899999999999999999872 2478999999874

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.95  E-value=8.4e-06  Score=63.80  Aligned_cols=36  Identities=28%  Similarity=0.481  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      .+|++|||+|++|+.+|..|.+  .|.+|+|||+++..
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~--~G~~V~lie~~~~~  163 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASR--SGARVMLLDERAEA  163 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCCCC
Confidence            3689999999999999999999  89999999997544

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.94  E-value=1.1e-05  Score=58.44  Aligned_cols=38  Identities=18%  Similarity=0.379  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ..+++|||+|++|+.+|..|.+..++.+|+|||+.+.+
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   43 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcC
Confidence            46999999999999999999984233899999997543

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.89  E-value=1.9e-05  Score=57.28  Aligned_cols=32  Identities=25%  Similarity=0.325  Sum_probs=28.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEc
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIA   59 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie   59 (90)
                      .+|++|||+|++|+.+|+.|++. .|.+|+|+|
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~-~G~~V~liE   34 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASL-HKKRVAVID   34 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHH-HCCCEEEEE
T ss_pred             cccEEEECCCHHHHHHHHHHHHH-cCCEEEEEe
Confidence            46999999999999999999872 378999999

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.88  E-value=2.4e-05  Score=57.99  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|++|||+|++|+.+|.++++  .|.+|+|+|+..
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~--~G~kValIE~~~   75 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAA--HGARVLLFDYVK   75 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHT--TTCCEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccc
Confidence            4799999999999999999999  899999999754

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.84  E-value=1.6e-05  Score=57.85  Aligned_cols=32  Identities=22%  Similarity=0.313  Sum_probs=28.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEc
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIA   59 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie   59 (90)
                      .+|++|||+|++|+.+|+.|++. .|.+|+|||
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~-~G~~V~liE   38 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATL-YGKRVAVVD   38 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHH-HCCCEEEEE
T ss_pred             ccCEEEECCChhHHHHHHHHHHh-cCCeEEEEe
Confidence            47999999999999999999872 278999999

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.83  E-value=1.5e-05  Score=59.54  Aligned_cols=36  Identities=36%  Similarity=0.495  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|++|||+|.+|+.+|.+|++. ++.+|+|+|+..
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~-~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTS-TTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhC-CCCcEEEEecCC
Confidence            457999999999999999999863 578999999975

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.74  E-value=1.4e-05  Score=61.18  Aligned_cols=34  Identities=32%  Similarity=0.475  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCC--------CcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPN--------CDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g--------~~v~vie~~~   62 (90)
                      .++|+|||+|++||++|+.|.+  .|        .+|+|+|++.
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~--~g~~~~~~~~~~V~v~E~~~   97 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGR--LAATLPAGSGIDVQIYEADP   97 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--HHTTSCTTCEEEEEEECCCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCcccccCCCceEEEEeccC
Confidence            3689999999999999999998  56        8999999875

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.74  E-value=4.3e-05  Score=55.82  Aligned_cols=35  Identities=17%  Similarity=0.261  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|++|||+|.+|+.+|.+|.+  .+.+|+|+|+..
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~--~~~~v~~~e~~~   44 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQ--AGIPTQIVEMGR   44 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH--CCCcEEEEECCC
Confidence            45799999999999999999999  899999999874

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.73  E-value=3.2e-05  Score=56.37  Aligned_cols=34  Identities=15%  Similarity=0.185  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|++|||+|.+|+.+|..|.+  .+.+|+|+|+..
T Consensus         5 ~~d~~iiG~G~~g~~~a~~l~~--~~~~v~~~e~~~   38 (504)
T 1n4w_A            5 YVPAVVIGTGYGAAVSALRLGE--AGVQTLMLEMGQ   38 (504)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCC
Confidence            4699999999999999999999  899999999875

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.64  E-value=6.2e-05  Score=55.51  Aligned_cols=37  Identities=19%  Similarity=0.373  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+|++|||+|.+|+.+|.+|.+. ++.+|+|+|+...
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~-~~~~v~~~e~g~~   48 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSED-PAVSVALVEAGPD   48 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC-CCCCEEEEecCCc
Confidence            357999999999999999999982 3899999999754

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.62  E-value=3.3e-05  Score=56.86  Aligned_cols=34  Identities=24%  Similarity=0.267  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+|++|||+|.+|+.+|.+|++   +.+|+|+|+...
T Consensus        26 ~yD~IIVGsG~AG~v~A~rLse---g~~VlvLEaG~~   59 (536)
T 1ju2_A           26 SYDYVIVGGGTSGCPLAATLSE---KYKVLVLERGSL   59 (536)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTT---TSCEEEECSSBC
T ss_pred             cccEEEECccHHHHHHHHHHhc---CCcEEEEecCCC
Confidence            4799999999999999999998   789999999754

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.59  E-value=3.3e-05  Score=57.53  Aligned_cols=36  Identities=25%  Similarity=0.418  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+|++|||+|.+|+.+|.+|++. ++.+|+|+|+...
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~-~~~~VlllEaG~~   37 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTED-PDVSVLVLEAGVS   37 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTS-TTCCEEEECSSBC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhC-cCCcEEEEecCCc
Confidence            36999999999999999999873 5889999999753

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.56  E-value=0.00011  Score=54.81  Aligned_cols=37  Identities=32%  Similarity=0.516  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+|++|||+|.+|+.+|.+|.+. ++.+|+|+|+...
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~-~~~~v~~~e~g~~   59 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTEN-PKIKVLVIEKGFY   59 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTS-TTCCEEEEESSCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEecCCc
Confidence            457999999999999999999873 4889999999743

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.25  E-value=0.00084  Score=40.84  Aligned_cols=34  Identities=18%  Similarity=0.236  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|+|.|..|..+|..|.+  .|.+|+++|+++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~--~g~~v~vid~~~   40 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLA--SDIPLVVIETSR   40 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEESCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCH
Confidence            4589999999999999999998  899999999863

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.23  E-value=0.00063  Score=51.67  Aligned_cols=37  Identities=19%  Similarity=0.227  Sum_probs=33.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+.+|++|+|+|..|..+|..|++  .|.+|+++|++..
T Consensus         6 ~~~~D~~i~GtGl~~~~~a~~~~~--~g~~vl~id~~~~   42 (650)
T 1vg0_A            6 PSDFDVIVIGTGLPESIIAAACSR--SGQRVLHVDSRSY   42 (650)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSS
T ss_pred             CCcCCEEEECCcHHHHHHHHHHHh--CCCEEEEEcCCCc
Confidence            346899999999999999999999  8999999999754

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.18  E-value=0.00075  Score=41.64  Aligned_cols=35  Identities=20%  Similarity=0.259  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+++|+|+|..|..++..|.+  .|.+|+++|+++
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~--~g~~V~vid~~~   52 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASS--SGHSVVVVDKNE   52 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence            34589999999999999999998  789999998763

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.13  E-value=0.00086  Score=45.14  Aligned_cols=35  Identities=17%  Similarity=0.271  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+-+|..|.+  .+.+|+++++.+.
T Consensus       145 ~k~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~  179 (312)
T 4gcm_A          145 NKRLFVIGGGDSAVEEGTFLTK--FADKVTIVHRRDE  179 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTT--TCSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--cCCEEEEEecccc
Confidence            3589999999999999999998  7999999998643

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.08  E-value=0.0012  Score=40.48  Aligned_cols=33  Identities=27%  Similarity=0.479  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+++|+|+|..|...+..|.+  .|.+|+++|++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~--~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQ--RGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHH--CCCCEEEEECC
Confidence            3579999999999999999998  79999999986

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.03  E-value=0.0002  Score=52.18  Aligned_cols=36  Identities=17%  Similarity=0.284  Sum_probs=27.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhC------------CCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRF------------PNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~------------~g~~v~vie~~~   62 (90)
                      ..|++|||+|++||++|..|.+..            .+...+.+|+.+
T Consensus        39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~   86 (501)
T 4b63_A           39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQK   86 (501)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSS
T ss_pred             cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccC
Confidence            369999999999999999997621            234567788864

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.02  E-value=0.0012  Score=39.26  Aligned_cols=32  Identities=25%  Similarity=0.368  Sum_probs=29.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+++|+|+|..|..++..|.+  .+.+|+++|++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~--~g~~v~~~d~~   36 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSE--KGHDIVLIDID   36 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence            479999999999999999998  78999999875

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.01  E-value=0.0013  Score=39.61  Aligned_cols=33  Identities=15%  Similarity=0.218  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+++|+|+|..|..+|..|.+  .|.+|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~--~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTA--AGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCeEEEEECCH
Confidence            479999999999999999998  799999999863

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.01  E-value=0.0013  Score=46.84  Aligned_cols=36  Identities=28%  Similarity=0.396  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ...+++|||+|++|+.+|..+++  .|.+|+++|+.+.
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~--~g~~Vtlv~~~~~  183 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAK--AGKKVTVIDILDR  183 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCcc
Confidence            34689999999999999999999  7999999998653

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=96.95  E-value=0.0014  Score=43.83  Aligned_cols=34  Identities=21%  Similarity=0.378  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+-+|..|.+  .|.+|+++++..
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~--~G~~Vt~v~~~~  185 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTK--YGSKVIILHRRD  185 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTT--TSSEEEEECSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHH--hCCeeeeecccc
Confidence            4689999999999999999999  899999999754

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.93  E-value=0.0011  Score=46.75  Aligned_cols=35  Identities=20%  Similarity=0.242  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++|+.+.
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~--~g~~Vtvv~~~~~  180 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIID--SGTPASIGIILEY  180 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHH--HTCCEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCeEEEEEcCCc
Confidence            3589999999999999999998  7899999998754

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.88  E-value=0.0016  Score=37.61  Aligned_cols=32  Identities=31%  Similarity=0.450  Sum_probs=28.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPN-CDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~   61 (90)
                      .+++|+|+|..|..++..|.+  .| .+|++++++
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~--~g~~~v~~~~r~   38 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKT--SSNYSVTVADHD   38 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--CSSEEEEEEESC
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCceEEEEeCC
Confidence            479999999999999999998  78 789999875

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=96.85  E-value=0.0018  Score=46.43  Aligned_cols=35  Identities=23%  Similarity=0.415  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|++  .|.+|+++|+.+.
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~  203 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRR--LGAEVTLIEYMPE  203 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCeEEEEEcCCc
Confidence            3689999999999999999999  7999999998643

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=96.81  E-value=0.0019  Score=46.05  Aligned_cols=35  Identities=23%  Similarity=0.440  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|.+|+.+|..|.+  .+.+|+++|+.+.
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~--~g~~V~lv~~~~~  201 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHR--LGAEVIVLEYMDR  201 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCEEEEEecCCc
Confidence            3689999999999999999998  7999999998643

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.80  E-value=0.0016  Score=46.70  Aligned_cols=35  Identities=20%  Similarity=0.490  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|.+|+.+|..|++  .|.+|+++|+.+.
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~  205 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRK--LGAQVSVVEARER  205 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHH--CCCeEEEEEcCCc
Confidence            4689999999999999999998  7899999998643

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.77  E-value=0.0022  Score=45.70  Aligned_cols=35  Identities=17%  Similarity=0.344  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .|.+|+++|+.+.
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~  204 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYAN--FGTKVTILEGAGE  204 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCc
Confidence            4689999999999999999999  7999999998643

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.76  E-value=0.0022  Score=44.75  Aligned_cols=34  Identities=29%  Similarity=0.397  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+++|||+|..|+.+|..|.+  .|.+|+++++.+.
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~  177 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAE--AGYHVKLIHRGAM  177 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHH--TTCEEEEECSSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCCe
Confidence            689999999999999999999  7999999998643

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=96.75  E-value=0.0026  Score=45.60  Aligned_cols=35  Identities=31%  Similarity=0.476  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .|.+|+++++.+.
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~  217 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSR--LGSKVTVVEFQPQ  217 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHH--cCCEEEEEEeCCc
Confidence            4689999999999999999999  8999999998643

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.73  E-value=0.0023  Score=43.91  Aligned_cols=33  Identities=21%  Similarity=0.308  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|+|||+|..|...|..|.+  .|.+|++++++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~--~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAK--TGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHH--TTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCh
Confidence            489999999999999999999  789999999863

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=96.72  E-value=0.0029  Score=44.08  Aligned_cols=35  Identities=31%  Similarity=0.457  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++|+.+.
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~  179 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSS--GGYQLDVVAPCEQ  179 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCeEEEEecCcc
Confidence            4689999999999999999999  7999999998643

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.72  E-value=0.0024  Score=37.96  Aligned_cols=32  Identities=28%  Similarity=0.395  Sum_probs=28.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+++|+|+|..|..++..|.+  .|.+|+++|++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~--~g~~v~~~d~~   38 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHR--MGHEVLAVDIN   38 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCCEEEESC
T ss_pred             CcEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            479999999999999999998  78899999875

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.70  E-value=0.0028  Score=44.17  Aligned_cols=34  Identities=26%  Similarity=0.319  Sum_probs=29.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      ..+|+|||+|..|..+|..|.+  .+. +|+++|.++
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~--~g~~~V~L~D~~~   43 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCAL--RELADVVLYDVVK   43 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEECCh
Confidence            3589999999999999999998  676 899999764

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.68  E-value=0.0024  Score=40.13  Aligned_cols=34  Identities=29%  Similarity=0.209  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCC-CCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~-g~~v~vie~~~   62 (90)
                      ..+++|+|+|..|..+|..|.+  . |.+|+++|+++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~--~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRA--RYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHH--HHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHh--ccCCeEEEEECCH
Confidence            4589999999999999999998  7 89999999763

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=96.64  E-value=0.0033  Score=44.93  Aligned_cols=35  Identities=20%  Similarity=0.252  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .|.+|+++|+.+.
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~  201 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVING--LGAKTHLFEMFDA  201 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--cCCEEEEEEeCCc
Confidence            4689999999999999999999  7999999998643

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.64  E-value=0.0037  Score=42.26  Aligned_cols=33  Identities=24%  Similarity=0.353  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.|||+|..|...|..+.+  .|.+|+++|.++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~--~G~~V~l~d~~~   37 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAF--HGFAVTAYDINT   37 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCH
Confidence            589999999999999999999  899999999763

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.63  E-value=0.0038  Score=42.42  Aligned_cols=32  Identities=19%  Similarity=0.422  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...|..|.+  .|.+|+++|++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~--~G~~V~~~d~~   47 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAA--TGHTVVLVDQT   47 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence            479999999999999999998  89999999975

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=96.63  E-value=0.0033  Score=44.36  Aligned_cols=35  Identities=23%  Similarity=0.477  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .|.+|+++++.+.
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~  179 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATART--AGVHVSLVETQPR  179 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCEEEEEEeCCc
Confidence            4689999999999999999999  7999999998753

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.56  E-value=0.0044  Score=42.39  Aligned_cols=33  Identities=30%  Similarity=0.510  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.|||.|..|...|..|.+  .|.+|+++|+++
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~--~G~~V~~~dr~~   54 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLK--NGFKVTVWNRTL   54 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSG
T ss_pred             CEEEEECccHHHHHHHHHHHH--CCCeEEEEeCCH
Confidence            589999999999999999999  899999999864

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=96.53  E-value=0.0043  Score=44.79  Aligned_cols=35  Identities=34%  Similarity=0.443  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|++  .+.+|+++++.+.
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~  228 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQR--KGKEVVLIDVVDT  228 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHH--CCCeEEEEEcccc
Confidence            4689999999999999999998  7999999998643

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=96.50  E-value=0.0046  Score=44.38  Aligned_cols=35  Identities=40%  Similarity=0.476  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .|.+|+++++.+.
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~--~G~~Vtlv~~~~~  200 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRS--FGSEVTVVALEDR  200 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--cCCEEEEEEcCCc
Confidence            3589999999999999999999  7999999998643

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=96.49  E-value=0.0027  Score=43.49  Aligned_cols=33  Identities=36%  Similarity=0.502  Sum_probs=29.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|+|||+|..|...|..|.+  .|.+|++++++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~--~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQR--SGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHH--TSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHH--CCCeEEEEEcCc
Confidence            479999999999999999999  789999999863

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=96.47  E-value=0.0049  Score=42.57  Aligned_cols=32  Identities=25%  Similarity=0.399  Sum_probs=29.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|+|||+|..|...|..|.+  .|.+|++++++
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~--~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLAL--AGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHH--TTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHH--CCCEEEEEECh
Confidence            479999999999999999999  88999999974

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.46  E-value=0.0036  Score=45.06  Aligned_cols=35  Identities=34%  Similarity=0.275  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..++|+|||.|.+|+++|..|.+  .|.+|+++|...
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~--~G~~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAK--LGAIVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHH--TTCEEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHh--CCCEEEEEeCCc
Confidence            34689999999999999999999  899999999853

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=96.45  E-value=0.0036  Score=45.01  Aligned_cols=35  Identities=26%  Similarity=0.337  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .|.+|+++|+.+.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~--~G~~Vtlv~~~~~  219 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYST--LGSRLDVVEMMDG  219 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHH--HTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEECCc
Confidence            4689999999999999999998  7899999998643

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=96.44  E-value=0.0056  Score=43.84  Aligned_cols=35  Identities=31%  Similarity=0.433  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .|.+|+++++.+.
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~  212 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQR--LGADVTAVEFLGH  212 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHH--cCCEEEEEeccCc
Confidence            3689999999999999999999  7999999998643

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.42  E-value=0.0039  Score=40.34  Aligned_cols=32  Identities=22%  Similarity=0.251  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +++|+|+|..|..+|..|.+  .|.+|+++|+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~--~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLS--RKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHH--TTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence            69999999999999999998  799999999763

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=96.42  E-value=0.0055  Score=43.77  Aligned_cols=35  Identities=29%  Similarity=0.377  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .|.+|+++++.+.
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~  205 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKN--YGVDVTIVEFLPR  205 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSS
T ss_pred             CCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEcCCc
Confidence            4689999999999999999999  7999999998643

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.41  E-value=0.0051  Score=42.24  Aligned_cols=32  Identities=25%  Similarity=0.129  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...|..|.+  .|.+|++++++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~--~g~~V~~~~r~   36 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLAL--KGQSVLAWDID   36 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCEEEEEeCC
Confidence            489999999999999999998  78999999875

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=96.40  E-value=0.0054  Score=44.36  Aligned_cols=35  Identities=31%  Similarity=0.447  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++++.+.
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~  208 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSR--LGVIVKVFGRSGS  208 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHH--TTCEEEEECCTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEECCc
Confidence            4689999999999999999999  8999999998653

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.40  E-value=0.0056  Score=40.76  Aligned_cols=36  Identities=19%  Similarity=0.299  Sum_probs=31.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ....+++|||+|..|...+..|.+  .|.+|+|++++.
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~--~GA~VtVvap~~   64 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQ--EGAAITVVAPTV   64 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGG--GCCCEEEECSSC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEECCCC
Confidence            355799999999999999999999  799999998764

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=96.39  E-value=0.0056  Score=43.55  Aligned_cols=35  Identities=26%  Similarity=0.513  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .|.+|+++++.+.
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~--~G~~Vtlv~~~~~  183 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIK--ANMHVTLLDTAAR  183 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCEEEEEEeCCc
Confidence            4689999999999999999999  7999999998644

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.39  E-value=0.0055  Score=41.76  Aligned_cols=32  Identities=22%  Similarity=0.406  Sum_probs=28.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC--DVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~   61 (90)
                      .+|+|||+|..|...|..|.+  .+.  +|+++|++
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~--~g~~~~V~l~d~~   41 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQ--RGIAREIVLEDIA   41 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCC
Confidence            489999999999999999998  777  89999875

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.38  E-value=0.0054  Score=42.82  Aligned_cols=32  Identities=25%  Similarity=0.353  Sum_probs=29.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...|..++.  .|.+|+++|..
T Consensus         7 ~~VaViGaG~MG~giA~~~a~--~G~~V~l~D~~   38 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFAS--GGFRVKLYDIE   38 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCCEEEECSC
T ss_pred             CeEEEECCcHHHHHHHHHHHh--CCCeEEEEECC
Confidence            589999999999999999998  89999999965

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=96.38  E-value=0.0037  Score=45.01  Aligned_cols=35  Identities=29%  Similarity=0.360  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+++|||+|..|+.+|..|.+  .+.+|+++++.+
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~  219 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVE--LGKKVRMIERND  219 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHH--TTCEEEEECCGG
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh--cCCeEEEEEeCC
Confidence            34689999999999999999999  799999999864

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=96.37  E-value=0.0051  Score=41.96  Aligned_cols=34  Identities=15%  Similarity=0.366  Sum_probs=29.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+-+|..|.+  .+.+|+++++..
T Consensus       166 ~~~vvVvG~G~~g~e~a~~l~~--~g~~V~lv~~~~  199 (369)
T 3d1c_A          166 KGQYVVIGGNESGFDAAYQLAK--NGSDIALYTSTT  199 (369)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHH--TTCEEEEECC--
T ss_pred             CCEEEEECCCcCHHHHHHHHHh--cCCeEEEEecCC
Confidence            3589999999999999999998  789999999864

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=96.35  E-value=0.0068  Score=42.73  Aligned_cols=35  Identities=23%  Similarity=0.403  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++.+.
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtvv~~~~~  177 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARK--LGLSVTILEAGDE  177 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCc
Confidence            4689999999999999999999  8999999998643

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.34  E-value=0.0067  Score=40.31  Aligned_cols=32  Identities=22%  Similarity=0.250  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|.|||+|..|...|..|.+  .|.+|++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCK--QGHEVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHh--CCCCEEEEEcCc
Confidence            69999999999999999998  789999999864

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.32  E-value=0.0056  Score=44.35  Aligned_cols=32  Identities=25%  Similarity=0.453  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|+..|..|++  .|.+|+++|.+
T Consensus         3 mkI~VIG~G~vG~~lA~~La~--~G~~V~~~D~~   34 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAE--LGANVRCIDTD   34 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHh--cCCEEEEEECC
Confidence            479999999999999999999  89999999975

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.32  E-value=0.0074  Score=41.93  Aligned_cols=34  Identities=32%  Similarity=0.530  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+|.|||+|..|..+|+.+.+  .+. +++++|..
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~--~g~~~v~l~D~~   41 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQ--KELADVVLVDIP   41 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEecc
Confidence            34689999999999999999998  677 89999976

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.31  E-value=0.006  Score=41.94  Aligned_cols=33  Identities=30%  Similarity=0.419  Sum_probs=29.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      .+|.|||+|..|..+|..|.+  .|. +|+++|.+.
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~--~g~~~V~l~D~~~   38 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGK--DNLADVVLFDIAE   38 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCceEEEEeCCc
Confidence            489999999999999999988  677 899999764

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.30  E-value=0.0058  Score=44.61  Aligned_cols=32  Identities=28%  Similarity=0.404  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|+..|..|++  .|.+|+++|.+
T Consensus         9 ~~I~VIG~G~vG~~lA~~la~--~G~~V~~~d~~   40 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLAD--IGHDVFCLDVD   40 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             ceEEEECcCHHHHHHHHHHHh--CCCEEEEEECC
Confidence            489999999999999999999  89999999975

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.30  E-value=0.0063  Score=40.86  Aligned_cols=32  Identities=38%  Similarity=0.511  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...|..|.+  .|.+|++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQ--GGNDVTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHh--CCCcEEEEECC
Confidence            379999999999999999998  78999999875

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=96.30  E-value=0.0068  Score=43.62  Aligned_cols=35  Identities=23%  Similarity=0.351  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .|.+|+++++.+.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~  219 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHG--LGSETHLVIRGET  219 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHH--TTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCceEEEEeCCc
Confidence            3689999999999999999999  7999999998643

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.30  E-value=0.0033  Score=43.11  Aligned_cols=35  Identities=20%  Similarity=0.627  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+|+|||+|..|...+..|.+  .|.+|+|++++.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~--~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMP--TGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGG--GTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHh--CCCEEEEEcCCC
Confidence            34689999999999999999999  899999999764

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=96.29  E-value=0.0037  Score=42.44  Aligned_cols=32  Identities=38%  Similarity=0.530  Sum_probs=29.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|+|||+|..|...|..|.+  .|.+|++++++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~--~g~~V~~~~r~   34 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQ--SLPHTTLIGRH   34 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--HCTTCEEEESS
T ss_pred             cEEEEECCCHHHHHHHHHHHH--CCCeEEEEEec
Confidence            479999999999999999998  68899999876

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=96.28  E-value=0.0059  Score=44.99  Aligned_cols=36  Identities=19%  Similarity=0.302  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..++|+|||+|..|+.+|..|++  .+.+|+++++.+.
T Consensus       177 ~~krV~VIG~G~sgve~a~~l~~--~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          177 AGRRVGVIGTGSTGQQVITSLAP--EVEHLTVFVRTPQ  212 (540)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTT--TCSEEEEEESSCC
T ss_pred             ccceEEEECCCchHHHHHHHHHh--hCCEEEEEECCCC
Confidence            34699999999999999999998  7899999998743

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.28  E-value=0.0068  Score=43.88  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .|.+|+++++.+.
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~  210 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKR--LGIDSYIFARGNR  210 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHT--TTCEEEEECSSSS
T ss_pred             CCeEEEECChHHHHHHHHHHHH--cCCeEEEEecCCc
Confidence            4689999999999999999998  7999999998643

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.26  E-value=0.0079  Score=42.30  Aligned_cols=33  Identities=39%  Similarity=0.510  Sum_probs=30.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+|.|||+|..|...|..|.+  .|.+|++++++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~--~G~~V~l~~r~   61 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLAR--KGQKVRLWSYE   61 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHT--TTCCEEEECSC
T ss_pred             CCeEEEECccHHHHHHHHHHHH--CCCeEEEEeCC
Confidence            4589999999999999999999  88999999875

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.25  E-value=0.0042  Score=44.31  Aligned_cols=35  Identities=31%  Similarity=0.434  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++++.+.
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~  211 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGR--IGSEVTVVEFASE  211 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHH--HTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCc
Confidence            4689999999999999999998  7899999998643

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=96.25  E-value=0.0079  Score=40.13  Aligned_cols=35  Identities=29%  Similarity=0.334  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++++.+.
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~--~g~~Vtlv~~~~~  177 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLAN--ICKKVYLIHRRDG  177 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHT--TSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--cCCEEEEEeeCCc
Confidence            4689999999999999999998  7899999998643

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=96.24  E-value=0.0092  Score=42.43  Aligned_cols=35  Identities=29%  Similarity=0.404  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++.+.
T Consensus       148 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~  182 (449)
T 3kd9_A          148 VENVVIIGGGYIGIEMAEAFAA--QGKNVTMIVRGER  182 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCeEEEEEcCCc
Confidence            3589999999999999999999  7999999998643

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.22  E-value=0.0056  Score=43.69  Aligned_cols=35  Identities=26%  Similarity=0.296  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++...
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~  181 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYE--RGLHPTLIHRSDK  181 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSSC
T ss_pred             CcEEEEECCccchhhhHHHHHh--cCCcceeeeeecc
Confidence            3589999999999999999999  7999999998643

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=96.20  E-value=0.0078  Score=41.43  Aligned_cols=34  Identities=26%  Similarity=0.306  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +..+|.|||+|..|...|..|.+  .|.+|+++++.
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~--~G~~V~~~~r~   46 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHE--NGEEVILWARR   46 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence            34689999999999999999999  89999999875

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=96.19  E-value=0.006  Score=43.25  Aligned_cols=36  Identities=22%  Similarity=0.430  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|+|||+|..|+-+|..|.+..++.+|+++++..
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~  262 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRAS  262 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCC
Confidence            468999999999999999999854488999999864

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=96.18  E-value=0.0081  Score=40.06  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++++.+.
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~--~g~~Vtlv~~~~~  178 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAG--IVEHVTLLEFAPE  178 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHT--TBSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--hCCEEEEEEeCcc
Confidence            3589999999999999999998  7889999998643

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.17  E-value=0.011  Score=41.10  Aligned_cols=33  Identities=27%  Similarity=0.367  Sum_probs=29.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      .+|.|||+|..|..+|..+.+  .+. +|+++|.++
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~--~g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQ--KNLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCCeEEEEeCCH
Confidence            489999999999999999998  677 899999753

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.16  E-value=0.0081  Score=42.35  Aligned_cols=34  Identities=15%  Similarity=0.330  Sum_probs=30.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+|.|||.|..|...|..|.+  .|.+|+++++.
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~--~G~~V~v~dr~   54 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRK--GGHECVVYDLN   54 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             cCCEEEEECchHHHHHHHHHHHh--CCCEEEEEeCC
Confidence            34689999999999999999999  89999999976

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=96.15  E-value=0.0085  Score=42.81  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..+.+  .|.+|+++++.+.
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~  208 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWAR--LGAEVTVVEFAPR  208 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHH--hCCEEEEEecCCc
Confidence            4689999999999999999999  7999999998643

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=96.15  E-value=0.0088  Score=42.56  Aligned_cols=35  Identities=26%  Similarity=0.427  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++.+.
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~  183 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSN--QNYNVNLIDGHER  183 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHh--cCCEEEEEEcCCc
Confidence            3689999999999999999998  7999999998643

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=96.15  E-value=0.015  Score=39.74  Aligned_cols=34  Identities=21%  Similarity=0.300  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|.|||.|..|...|..|.+  .|.+|+++|+++
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~--~G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLK--QGKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence            3589999999999999999999  899999999763

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=96.15  E-value=0.0058  Score=45.24  Aligned_cols=33  Identities=27%  Similarity=0.290  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +.+++|||+|+.|+..|..+++  -|.+|+|+++.
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~--lG~~VTii~~~  255 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNS--LGYDVTVAVRS  255 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH--HTCCEEEEESS
T ss_pred             CceEEEECCCHHHHHHHHHHHh--cCCeEEEeccc
Confidence            3689999999999999999999  79999999864

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.14  E-value=0.01  Score=38.41  Aligned_cols=33  Identities=21%  Similarity=0.348  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.|||+|..|...|..|.+  .|.+|+++++++
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~--~g~~V~~~~~~~   52 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEI--AGHEVTYYGSKD   52 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCH
Confidence            489999999999999999998  789999998764

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=96.14  E-value=0.0098  Score=42.49  Aligned_cols=34  Identities=26%  Similarity=0.479  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++.+
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~  209 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFAR--LGSKVTVLARNT  209 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--cCCEEEEEEECC
Confidence            4689999999999999999999  799999999864

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=96.13  E-value=0.0066  Score=44.76  Aligned_cols=35  Identities=14%  Similarity=0.272  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..++|+|||+|..|+.+|..|++  .+.+|+++++.+
T Consensus       184 ~~krV~VIG~G~tgve~a~~la~--~~~~Vtv~~r~~  218 (545)
T 3uox_A          184 TGKRVGVIGTGATGVQIIPIAAE--TAKELYVFQRTP  218 (545)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHTT--TBSEEEEEESSC
T ss_pred             CCCeEEEECCCccHHHHHHHHHh--hCCEEEEEEcCC
Confidence            34689999999999999999998  788999999875

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=96.12  E-value=0.0081  Score=43.76  Aligned_cols=33  Identities=18%  Similarity=0.255  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+|.|||.|..||.+|..+++  .|.+|+.+|-+
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~--~G~~V~g~Did   53 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFAL--LGHRVVGYDVN   53 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--HTCEEEEECSC
T ss_pred             CCEEEEEccCHHHHHHHHHHHh--CCCcEEEEECC
Confidence            3589999999999999999998  79999999865

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=96.11  E-value=0.0046  Score=41.75  Aligned_cols=31  Identities=29%  Similarity=0.309  Sum_probs=28.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCC-----C-CcEEEEcc
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFP-----N-CDVTVIAD   60 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~-----g-~~v~vie~   60 (90)
                      .+|.|||+|..|...|..|.+  .     | .+|+++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~--~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLAL--RAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--HHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CccccCCCCCEEEEEc
Confidence            479999999999999999998  6     7 89999986

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.09  E-value=0.0099  Score=43.17  Aligned_cols=34  Identities=18%  Similarity=0.395  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .++.|||.|..|+..|..|++  .|.+|+++|.++.
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~--~G~~V~~~D~~~~   42 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSD--FGHEVVCVDKDAR   42 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCST
T ss_pred             eEEEEEcCCHHHHHHHHHHHH--CCCEEEEEeCCHH
Confidence            589999999999999999999  8999999998743

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=96.08  E-value=0.01  Score=40.01  Aligned_cols=35  Identities=23%  Similarity=0.296  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++++.+.
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~--~g~~V~lv~~~~~  193 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTK--YGSKVYIIHRRDA  193 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTT--TSSEEEEECSSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHh--cCCeEEEEecCCc
Confidence            4689999999999999999988  7899999998643

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.08  E-value=0.012  Score=40.97  Aligned_cols=33  Identities=36%  Similarity=0.454  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      .+|.|||+|..|..+|..+.+  .+. +|+++|.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~--~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQ--KDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCCeEEEEECCH
Confidence            589999999999999999998  777 899999764

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=96.06  E-value=0.015  Score=39.53  Aligned_cols=34  Identities=26%  Similarity=0.409  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|.|||+|..|...|..|.+  .|.+|++++++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~--~g~~V~~~~~~~   63 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLK--MGHTVTVWNRTA   63 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHH--TTCCEEEECSSG
T ss_pred             CCeEEEEcccHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence            3589999999999999999998  788999998753

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.05  E-value=0.0092  Score=44.00  Aligned_cols=32  Identities=31%  Similarity=0.342  Sum_probs=29.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+++|||+|..|+-+|..|.+  .|.+|+++++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLAS--LGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHH--cCCEEEEEECC
Confidence            589999999999999999999  79999999975

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=96.03  E-value=0.0098  Score=43.30  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++++.+.
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~  185 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHH--LGIKTTLLELADQ  185 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--cCCcEEEEEcCCc
Confidence            3589999999999999999999  7999999998643

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=96.03  E-value=0.007  Score=43.37  Aligned_cols=34  Identities=24%  Similarity=0.375  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ++|+|||.|.+|+++|..|.+  .|.+|+++|....
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~--~G~~v~~~D~~~~   39 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLA--RGVTPRVMDTRMT   39 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHT--TTCCCEEEESSSS
T ss_pred             CEEEEEeecHHHHHHHHHHHh--CCCEEEEEECCCC
Confidence            579999999999999998888  8999999998643

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.02  E-value=0.011  Score=40.18  Aligned_cols=32  Identities=22%  Similarity=0.251  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||.|..|...|..|.+  .|.+|+++|++
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~--~G~~V~~~dr~   39 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLR--AGLSTWGADLN   39 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHH--CCCeEEEEECC
Confidence            589999999999999999999  89999999975

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=96.00  E-value=0.007  Score=44.66  Aligned_cols=35  Identities=14%  Similarity=0.308  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..++|+|||+|..|+.+|..|++  .+.+|+++++.+
T Consensus       190 ~~krV~VIG~G~sgve~a~~l~~--~~~~Vtv~~r~~  224 (549)
T 4ap3_A          190 TGKRVGVIGTGSSGIQSIPIIAE--QAEQLFVFQRSA  224 (549)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHH--HBSEEEEEESSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHh--hCCEEEEEECCC
Confidence            34699999999999999999998  688999999874

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=95.99  E-value=0.012  Score=41.31  Aligned_cols=35  Identities=26%  Similarity=0.430  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++.+.
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtvv~~~~~  186 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTK--FGVNVTLLEALPR  186 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--cCCeEEEEecCCc
Confidence            5689999999999999999999  8999999998754

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=95.97  E-value=0.012  Score=39.37  Aligned_cols=34  Identities=32%  Similarity=0.459  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++++..
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~--~g~~Vtlv~~~~  178 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSN--IASEVHLIHRRD  178 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTT--TSSEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--cCCeEEEEEeCC
Confidence            4689999999999999999998  789999999864

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=95.97  E-value=0.012  Score=41.79  Aligned_cols=34  Identities=9%  Similarity=-0.076  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCc-EEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~-v~vie~~~   62 (90)
                      ..+|+|||+|.+|+-+|..|.+  .+.+ |+++++..
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~--~~~~~V~l~~r~~  246 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTP--VAKHPIYQSLLGG  246 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTT--TSCSSEEEECTTC
T ss_pred             CCEEEEEccCcCHHHHHHHHHH--HhCCcEEEEeCCC
Confidence            4689999999999999999998  7888 99998764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=95.97  E-value=0.01  Score=39.91  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++++.+
T Consensus       152 ~~~v~VvG~G~~g~e~A~~l~~--~g~~Vtlv~~~~  185 (325)
T 2q7v_A          152 GKKVVVIGGGDAAVEEGMFLTK--FADEVTVIHRRD  185 (325)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTT--TCSEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--cCCEEEEEeCCC
Confidence            3689999999999999999998  789999999864

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.97  E-value=0.0076  Score=40.94  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+|.|||.|..|...|..|.+  .|.+|+++|+++.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~--~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTE--WPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTT--STTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCHH
Confidence            4589999999999999999999  8999999998643

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=95.95  E-value=0.013  Score=42.03  Aligned_cols=34  Identities=21%  Similarity=0.242  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++.+
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~  220 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHD  220 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CccEEEECCCHHHHHHHHHHHH--cCCeEEEEEeCC
Confidence            3689999999999999999999  799999999864

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=95.95  E-value=0.013  Score=39.80  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++++..
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~--~g~~V~l~~~~~  188 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTR--FARSVTLVHRRD  188 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTT--TCSEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--hCCeEEEEEcCC
Confidence            4689999999999999999998  789999999864

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=95.91  E-value=0.014  Score=40.90  Aligned_cols=35  Identities=29%  Similarity=0.424  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++.+.
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtvv~~~~~  176 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARA--KGLEVDVVELAPR  176 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCCc
Confidence            3689999999999999999998  7999999998754

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=95.90  E-value=0.01  Score=42.67  Aligned_cols=35  Identities=6%  Similarity=0.069  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+|+|||+|.+|+-+|..|.+  .+.+|+++++...
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~--~g~~V~li~~~~~  231 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYK--YGAKKLISCYRTA  231 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHH--TTCSEEEEECSSC
T ss_pred             CCEEEEEcCCCCHHHHHHHHHH--hCCeEEEEEECCC
Confidence            4689999999999999999999  7999999997643

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=95.89  E-value=0.01  Score=42.74  Aligned_cols=34  Identities=26%  Similarity=0.345  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..|.+  .|.+|+++++.+
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~  231 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWAR--LGAKVTVVEFLD  231 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCEEEEEeccc
Confidence            4689999999999999999998  789999999764

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=95.89  E-value=0.013  Score=40.21  Aligned_cols=31  Identities=23%  Similarity=0.539  Sum_probs=28.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNC--DVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~   61 (90)
                      +|+|||+|..|..+|..|.+  .+.  +|+++|.+
T Consensus         2 kI~VIGaG~vG~~la~~la~--~g~~~eV~L~D~~   34 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVL--RGSCSELVLVDRD   34 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCC
Confidence            69999999999999999998  677  89999875

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=95.89  E-value=0.024  Score=39.68  Aligned_cols=35  Identities=23%  Similarity=0.310  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+|+|+|+|..|..++..+++  .|.+|.++|..+
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~--lG~~viv~d~~~   45 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQK--MGYKVVVLDPSE   45 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEECCC
Confidence            45689999999999999999999  899999998753

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=95.88  E-value=0.014  Score=41.75  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++.+
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~  205 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRL--MGVQTHIIEMLD  205 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCEEEEEEeCC
Confidence            4689999999999999999999  799999999864

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=95.88  E-value=0.014  Score=39.29  Aligned_cols=33  Identities=30%  Similarity=0.549  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.|||.|..|...|..|.+  .|.+|+++++++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~--~G~~V~~~dr~~   34 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVK--AGCSVTIWNRSP   34 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSG
T ss_pred             CEEEEEeecHHHHHHHHHHHH--CCCeEEEEcCCH
Confidence            379999999999999999999  899999999864

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.88  E-value=0.015  Score=41.87  Aligned_cols=35  Identities=23%  Similarity=0.356  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+|+|+|+|.+|+.++..+..  .|.+|+++|..+
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~--lGa~V~v~D~~~  223 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARR--LGAVVSATDVRP  223 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEcCCH
Confidence            34699999999999999999988  799999999864

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=95.87  E-value=0.0095  Score=40.85  Aligned_cols=33  Identities=18%  Similarity=0.274  Sum_probs=29.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ..+|.|||.|..|...|..|.+  .|. +|+++|++
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~--~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQ--AGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHH--HSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHH--CCCCeEEEEcCC
Confidence            3589999999999999999998  788 99999985

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.87  E-value=0.014  Score=40.40  Aligned_cols=33  Identities=33%  Similarity=0.486  Sum_probs=28.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~~   62 (90)
                      .+|+|||+|..|..+|+.|..  .+.  +++++|.+.
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~~--~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMAL--RQTANELVLIDVFK   42 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTCSSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCCh
Confidence            589999999999999999998  565  899999753

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=95.85  E-value=0.015  Score=38.94  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++++...
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~--~g~~v~~v~~~~~  207 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTK--YGSKVFMLVRKDH  207 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTT--TSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--cCCEEEEEEcCCc
Confidence            4689999999999999999998  7899999998643

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.85  E-value=0.015  Score=39.96  Aligned_cols=33  Identities=30%  Similarity=0.445  Sum_probs=28.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      .+|.|||+|..|..+|..+.+  .+. +|+++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~--~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAA--KELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCCeEEEEeCCc
Confidence            479999999999999999988  665 899999753

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.82  E-value=0.019  Score=41.99  Aligned_cols=33  Identities=21%  Similarity=0.377  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.|||+|..|...|..+++  .|.+|+++|.++
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~--aG~~V~l~D~~~   87 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGL--AGIETFLVVRNE   87 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCeEEEEECcH
Confidence            589999999999999999999  899999999763

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=95.81  E-value=0.018  Score=39.63  Aligned_cols=34  Identities=26%  Similarity=0.277  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~~   62 (90)
                      ..+|.|||.|..|...|..|.+  .|.  +|+++|+++
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~--~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRR--SGFKGKIYGYDINP   68 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHH--TTCCSEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHh--CCCCCEEEEEECCH
Confidence            3589999999999999999998  788  899999763

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=95.79  E-value=0.014  Score=42.46  Aligned_cols=33  Identities=30%  Similarity=0.307  Sum_probs=29.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++.
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~--~G~~Vtlv~~~  242 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAG--IGLDVTVMVRS  242 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             CCeEEEECCcHHHHHHHHHHHH--cCCeEEEEecc
Confidence            3579999999999999999999  79999999874

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=95.78  E-value=0.016  Score=38.28  Aligned_cols=35  Identities=29%  Similarity=0.375  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+|.|||+|..|...|..|.+  .|.+|+++++++
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~--~G~~V~~~~r~~   52 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALAD--LGHEVTIGTRDP   52 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCh
Confidence            34689999999999999999999  799999998753

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=95.78  E-value=0.012  Score=39.61  Aligned_cols=34  Identities=26%  Similarity=0.345  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++++.+
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~--~g~~V~~v~~~~  185 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLD--TARRITLIHRRP  185 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTT--TSSEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--hCCEEEEEEcCC
Confidence            4689999999999999999988  788999999864

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=95.78  E-value=0.015  Score=41.85  Aligned_cols=33  Identities=27%  Similarity=0.266  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~  217 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTG--IGLDTTVMMRS  217 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCceEEEEcC
Confidence            3579999999999999999999  79999999875

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.76  E-value=0.0062  Score=44.23  Aligned_cols=33  Identities=36%  Similarity=0.475  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|+|+|+|-.|..+|..|.+  .+.+|+++|+++
T Consensus         4 M~iiI~G~G~vG~~la~~L~~--~~~~v~vId~d~   36 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVG--ENNDITIVDKDG   36 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCS--TTEEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCCEEEEECCH
Confidence            379999999999999999988  789999999863

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=95.76  E-value=0.012  Score=42.55  Aligned_cols=37  Identities=22%  Similarity=0.203  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCC-CCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~-g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+..+ +.+|+++++.+.
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~  228 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNL  228 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCc
Confidence            3689999999999999999988211 899999998643

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.74  E-value=0.012  Score=43.18  Aligned_cols=34  Identities=21%  Similarity=0.384  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCC-CC-cEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFP-NC-DVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~-g~-~v~vie~~~~   63 (90)
                      .+|.|||+|..|+..|..|++  . |. +|+++|.++.
T Consensus        19 mkIaVIGlG~mG~~lA~~la~--~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFAD--APCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH--STTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHH--hCCCCeEEEEECChh
Confidence            489999999999999999999  7 99 9999998754

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=95.74  E-value=0.016  Score=41.24  Aligned_cols=35  Identities=31%  Similarity=0.373  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++.+.
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~  181 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVK--MKKTVHVFESLEN  181 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCc
Confidence            3689999999999999999999  8999999998643

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=95.73  E-value=0.012  Score=39.27  Aligned_cols=34  Identities=21%  Similarity=0.349  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      ..+|+|||+|..|..+|..|.+  .|. +++++|.+.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~--~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLAS--AGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHH--HTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHH--cCCCeEEEEcCCC
Confidence            3589999999999999999998  787 899999864

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=95.73  E-value=0.014  Score=39.22  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++++.+
T Consensus       155 ~~~v~viG~G~~g~e~a~~l~~--~g~~V~~i~~~~  188 (319)
T 3cty_A          155 GKRVVTIGGGNSGAIAAISMSE--YVKNVTIIEYMP  188 (319)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTT--TBSEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--hCCcEEEEEcCC
Confidence            3589999999999999999998  788999998754

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=95.71  E-value=0.013  Score=40.29  Aligned_cols=32  Identities=28%  Similarity=0.447  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||.|..|...|..|.+  .|.+|+++|++
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~--~G~~V~~~dr~   63 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCE--AGYALQVWNRT   63 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHh--CCCeEEEEcCC
Confidence            589999999999999999999  89999999976

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=95.70  E-value=0.027  Score=38.87  Aligned_cols=34  Identities=12%  Similarity=0.329  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ++|+|+|+|..|..+++.+++  .|++++++|.++.
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~--~G~~vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKK--AGMKVVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCCC
Confidence            579999999999999999988  8999999997643

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=95.67  E-value=0.02  Score=41.45  Aligned_cols=32  Identities=25%  Similarity=0.485  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...|..+.+  .|.+|+++|.+
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~--~G~~V~l~D~~   69 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFAR--VGISVVAVESD   69 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT--TTCEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CCCeEEEEECC
Confidence            479999999999999999998  89999999875

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=95.67  E-value=0.013  Score=42.34  Aligned_cols=36  Identities=14%  Similarity=0.080  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCC-CCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~-g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..+.+..+ |.+|+++++.+
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~  223 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD  223 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCC
Confidence            3689999999999999999988211 89999999864

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=95.66  E-value=0.021  Score=39.78  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=29.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      ..+|.|||+|..|..+|+.|.+  .+. +++++|..+
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~--~~~~~v~L~Di~~   41 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGL--KELGDVVLFDIAE   41 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEeCCc
Confidence            3589999999999999999998  677 899999764

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=95.65  E-value=0.013  Score=40.68  Aligned_cols=31  Identities=26%  Similarity=0.409  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||+|..|...|..|.+  .|.+|++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~--~G~~V~~~~r~   47 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSK--KCREVCVWHMN   47 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTT--TEEEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHh--CCCEEEEEECC
Confidence            79999999999999999998  78899999875

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=95.64  E-value=0.021  Score=37.05  Aligned_cols=32  Identities=34%  Similarity=0.336  Sum_probs=29.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...+..|.+  .|.+|++++++
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~--~g~~V~~~~r~   60 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVG--SGFKVVVGSRN   60 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             CEEEEEccCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            579999999999999999998  78899999875

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=95.64  E-value=0.017  Score=39.59  Aligned_cols=29  Identities=41%  Similarity=0.541  Sum_probs=27.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEE
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVI   58 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vi   58 (90)
                      .+|+|||+|..|...|..|.+  .|.+|+++
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~--~G~~V~l~   48 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLAR--AGHEVILI   48 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHH--TTCEEEEE
T ss_pred             CcEEEECcCHHHHHHHHHHHH--CCCeEEEE
Confidence            489999999999999999999  88999999

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=95.64  E-value=0.019  Score=41.08  Aligned_cols=34  Identities=32%  Similarity=0.479  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++.+
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~  213 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWAR--LGAEVTVLEAMD  213 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCC
Confidence            4689999999999999999999  799999999864

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=95.63  E-value=0.016  Score=40.39  Aligned_cols=33  Identities=36%  Similarity=0.541  Sum_probs=28.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~   61 (90)
                      ..+|.|||+|..|..+|+.|.+  .+.  +++++|..
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~--~~~~~~l~l~D~~   39 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALIN--QGITDELVVIDVN   39 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--HTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCCceEEEEecc
Confidence            3589999999999999999988  455  89999864

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=95.63  E-value=0.012  Score=42.93  Aligned_cols=34  Identities=32%  Similarity=0.494  Sum_probs=29.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||.|..|+..|..|++..+|.+|+++|.+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~   43 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMN   43 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            4899999999999999999983227899999865

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=95.61  E-value=0.025  Score=41.54  Aligned_cols=34  Identities=21%  Similarity=0.424  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++.+
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~  220 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRE--RGIEVTLVEMAN  220 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCeEEEEecCC
Confidence            4689999999999999999999  899999999864

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=95.60  E-value=0.011  Score=42.40  Aligned_cols=31  Identities=23%  Similarity=0.326  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||+|..|+..|..|.+  .|.+|+++|.+
T Consensus         2 kI~VIG~G~vG~~~A~~la~--~G~~V~~~d~~   32 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSA--RGHEVIGVDVS   32 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHH--TTCEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            69999999999999999999  89999999875

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.59  E-value=0.02  Score=41.08  Aligned_cols=33  Identities=24%  Similarity=0.260  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|+|+|.|..|..++..|.+  .|.+|+++|+++
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~--~g~~vvvId~d~   37 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLS--SGVKMVVLDHDP   37 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEECCH
T ss_pred             CeEEEECCCHHHHHHHHHHHH--CCCCEEEEECCH
Confidence            479999999999999999998  899999999863

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.59  E-value=0.022  Score=36.77  Aligned_cols=35  Identities=17%  Similarity=0.245  Sum_probs=30.1

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..++|+|.|+ |..|..++..|.+  .|.+|+++.++.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~--~G~~V~~~~R~~   55 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKN--KGHEPVAMVRNE   55 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESSG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHh--CCCeEEEEECCh
Confidence            4568999998 9999999999999  799999998763

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.59  E-value=0.021  Score=41.74  Aligned_cols=33  Identities=21%  Similarity=0.267  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.|||+|..|...|..+.+  .|.+|+++|.+.
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~--aG~~V~l~D~~~   38 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAAS--HGHQVLLYDISA   38 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTCCEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHH--CCCeEEEEECCH
Confidence            479999999999999999999  899999999763

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=95.59  E-value=0.02  Score=39.43  Aligned_cols=34  Identities=24%  Similarity=0.240  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~   62 (90)
                      ..+|.|||.|..|...|..|.+  .| .+|+++|+++
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~--~G~~~V~~~dr~~   58 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGG--RNAARLAAYDLRF   58 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TTCSEEEEECGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHH--cCCCeEEEEeCCC
Confidence            3589999999999999999999  88 8999999864

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.56  E-value=0.028  Score=37.23  Aligned_cols=33  Identities=30%  Similarity=0.383  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|+|.|+|..|..++..|.+  .|.+|+++.+..
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~--~g~~V~~~~r~~   36 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTA--QGHEVTGLRRSA   36 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTCCEEEEECTT
T ss_pred             CcEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCc
Confidence            479999999999999999998  789999998764

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=95.55  E-value=0.024  Score=38.93  Aligned_cols=34  Identities=24%  Similarity=0.420  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|+|||+|..|..+|..|.+...+.+|+++|.++
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            6999999999999999998832267899999864

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=95.55  E-value=0.022  Score=41.46  Aligned_cols=33  Identities=6%  Similarity=0.096  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+++|||+|..|+.+|..+.+  .|.+|+++++.+
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~--~G~~Vtlv~~~~  247 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNA--TGRRTVMLVRTE  247 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEecC
Confidence            689999999999999999998  799999999864

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=95.55  E-value=0.023  Score=40.95  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++.+.
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~  216 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTE--LGVPVTVVASQDH  216 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHH--TTCCEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCc
Confidence            3689999999999999999998  7999999998643

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=95.54  E-value=0.0074  Score=36.58  Aligned_cols=33  Identities=24%  Similarity=0.436  Sum_probs=28.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+++|+|+|..|...+..|.+  .|.+|+++++.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~--~g~~v~v~~r~   53 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSY--PQYKVTVAGRN   53 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCT--TTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCC
Confidence            4589999999999999998887  67889999875

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.54  E-value=0.016  Score=41.51  Aligned_cols=35  Identities=20%  Similarity=0.262  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+++|+|+|.+|+.++..+..  .|.+|+++|+..
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~--lGa~V~v~D~~~  217 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKR--LGAKTTGYDVRP  217 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHH--HTCEEEEECSSG
T ss_pred             CCCEEEEECchHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence            34689999999999999999888  688999999864

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=95.53  E-value=0.034  Score=37.74  Aligned_cols=33  Identities=24%  Similarity=0.369  Sum_probs=29.5

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILG-AGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG-~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.||| .|..|...|..|.+  .|.+|++++++.
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~--~G~~V~~~~~~~   55 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRA--SGYPISILDRED   55 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHT--TTCCEEEECTTC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHh--CCCeEEEEECCc
Confidence            4799999 99999999999998  789999998753

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=95.52  E-value=0.028  Score=39.10  Aligned_cols=33  Identities=27%  Similarity=0.266  Sum_probs=29.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      .+|.|||+|..|..+|..|.+  .+. ++.++|..+
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~--~~~~~v~l~Di~~   39 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALI--KQLGDVVLFDIAQ   39 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCceEEEEeCCh
Confidence            589999999999999999988  566 899999764

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=95.48  E-value=0.018  Score=39.33  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++++..
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~--~g~~V~lv~~~~  196 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIK--NAASVTLVHRGH  196 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTT--TSSEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHh--cCCEEEEEEcCC
Confidence            4689999999999999999988  788999999864

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=95.46  E-value=0.015  Score=39.48  Aligned_cols=30  Identities=30%  Similarity=0.468  Sum_probs=27.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD   60 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~   60 (90)
                      +|.|||+|..|...|..|.+  .|.+|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~--~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVD--NGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHH--HCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHh--CCCeEEEEEc
Confidence            68999999999999999998  7889999998

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=95.42  E-value=0.013  Score=38.07  Aligned_cols=32  Identities=25%  Similarity=0.325  Sum_probs=28.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEE-EccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTV-IADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~v-ie~~   61 (90)
                      .+|.|||+|..|...|..|.+  .|.+|++ ++++
T Consensus        24 mkI~IIG~G~mG~~la~~l~~--~g~~V~~v~~r~   56 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTA--AQIPAIIANSRG   56 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHH--TTCCEEEECTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCEEEEEECCC
Confidence            589999999999999999998  7889998 7765

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=95.41  E-value=0.033  Score=37.38  Aligned_cols=32  Identities=28%  Similarity=0.417  Sum_probs=29.2

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+ |..|...|..|.+  .|.+|++++++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~--~g~~V~~~~r~   44 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHD--SAHHLAAIEIA   44 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--SSSEEEEECCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHh--CCCEEEEEECC
Confidence            47999999 9999999999998  78999999875

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=95.38  E-value=0.033  Score=36.67  Aligned_cols=32  Identities=13%  Similarity=0.295  Sum_probs=28.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC----cEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC----DVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~----~v~vie~~   61 (90)
                      .+|.|||+|..|...+..|.+  .|.    +|++++++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~--~g~~~~~~V~~~~r~   38 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMIN--KNIVSSNQIICSDLN   38 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTSSCGGGEEEECSC
T ss_pred             CeEEEECccHHHHHHHHHHHh--CCCCCCCeEEEEeCC
Confidence            479999999999999999998  777    99999975

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=95.37  E-value=0.026  Score=40.24  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=30.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+|+|+|+|.+|+.++..+..  .|.+|+++|...
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~--~Ga~V~v~D~~~  205 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANS--LGAIVRAFDTRP  205 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCH
Confidence            34689999999999999998888  788999999763

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=95.36  E-value=0.026  Score=38.75  Aligned_cols=33  Identities=15%  Similarity=0.299  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCC----CcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPN----CDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g----~~v~vie~~~   62 (90)
                      .+|.|||+|..|...|..|.+  .|    .+|++++++.
T Consensus        23 mkI~iIG~G~mG~ala~~L~~--~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           23 MSVGFIGAGQLAFALAKGFTA--AGVLAAHKIMASSPDM   59 (322)
T ss_dssp             CCEEEESCSHHHHHHHHHHHH--TTSSCGGGEEEECSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCCCcceEEEECCCc
Confidence            479999999999999999988  77    7899998764

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=95.34  E-value=0.031  Score=39.48  Aligned_cols=35  Identities=20%  Similarity=0.323  Sum_probs=30.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+++|+|+|.+|+.++..+..  .|.+|+++|..+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~--~Ga~V~~~d~~~  205 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKR--LGAVVMATDVRA  205 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence            45689999999999999998888  788999999764

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.34  E-value=0.025  Score=37.37  Aligned_cols=33  Identities=9%  Similarity=0.040  Sum_probs=29.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|+|.|+|..|..++..|.+  .|.+|+++.+..
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~--~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAP--QGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGG--GTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHH--CCCEEEEEEcCh
Confidence            489999999999999999998  789999998753

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=95.32  E-value=0.026  Score=40.51  Aligned_cols=33  Identities=33%  Similarity=0.397  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++.
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~  219 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKG--LGYEPTVMVRS  219 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCcEEEECCCHHHHHHHHHHHH--cCCEEEEEeCC
Confidence            3589999999999999999999  79999999874

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=95.30  E-value=0.019  Score=38.51  Aligned_cols=32  Identities=22%  Similarity=0.360  Sum_probs=28.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...|..|.+  .|.+|++++++
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~~~   36 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLK--EGVTVYAFDLM   36 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHH--TTCEEEEECSS
T ss_pred             CEEEEECccHHHHHHHHHHHH--CCCeEEEEeCC
Confidence            479999999999999999998  78899999875

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.30  E-value=0.022  Score=41.22  Aligned_cols=34  Identities=26%  Similarity=0.296  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|.+|...+..|.+  .|.+|+|++++.
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~--~ga~V~vi~~~~   45 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLE--AGARLTVNALTF   45 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CcCEEEEEcCCC
Confidence            4689999999999999999999  899999999753

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=95.28  E-value=0.028  Score=36.98  Aligned_cols=33  Identities=18%  Similarity=0.247  Sum_probs=28.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCC----CcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPN----CDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g----~~v~vie~~~   62 (90)
                      .+|.|||+|..|...|..|.+  .|    .+|+++++++
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~--~g~~~~~~v~~~~~~~   41 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIAN--ANIIKKENLFYYGPSK   41 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHH--HTSSCGGGEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHH--CCCCCCCeEEEEeCCc
Confidence            479999999999999999988  56    6899999864

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=95.26  E-value=0.034  Score=40.80  Aligned_cols=34  Identities=12%  Similarity=0.227  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|.|||.|..|...|..|.+  .|.+|+++++.+
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~--~G~~V~v~dr~~   43 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAAD--HGFTVCAYNRTQ   43 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CCCEEEEeeHHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence            4589999999999999999999  899999999763

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=95.24  E-value=0.035  Score=37.27  Aligned_cols=33  Identities=24%  Similarity=0.416  Sum_probs=29.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+++|+|+|.+|..++..|.+  .|.+|+++++.
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~--~G~~V~v~~R~  151 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLS--LDCAVTITNRT  151 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHH--cCCEEEEEECC
Confidence            4589999999999999999998  78899999875

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=95.23  E-value=0.029  Score=40.94  Aligned_cols=34  Identities=18%  Similarity=0.484  Sum_probs=30.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+|.|||.|..|...|..|.+  .|.+|+++++.
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~--~G~~V~v~~r~   47 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIES--RGYTVSIFNRS   47 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHT--TTCCEEEECSS
T ss_pred             CCCeEEEEccHHHHHHHHHHHHh--CCCeEEEEeCC
Confidence            34589999999999999999998  89999999875

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=95.22  E-value=0.022  Score=39.21  Aligned_cols=31  Identities=32%  Similarity=0.495  Sum_probs=27.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNC--DVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~   61 (90)
                      +|.|||+|..|...|..|.+  .+.  +|+++|.+
T Consensus         2 kI~VIGaG~~G~~la~~l~~--~g~~~~V~l~D~~   34 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLM--KGFAREMVLIDVD   34 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--HTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCCCeEEEEeCC
Confidence            69999999999999999988  677  89999875

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=95.21  E-value=0.034  Score=36.82  Aligned_cols=35  Identities=29%  Similarity=0.284  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++++...
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~--~g~~v~~~~~~~~  188 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSS--YSTKVYLIHRRDT  188 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--HSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--hCCeEEEEEeCCC
Confidence            4689999999999999999998  6889999998643

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=95.21  E-value=0.023  Score=40.92  Aligned_cols=35  Identities=26%  Similarity=0.326  Sum_probs=30.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ....+|+|+|+|.+|+.+|..+..  .|. +|+++|+.
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~--~Ga~~I~v~D~~  221 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLA--AGATKVTVVDKF  221 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHH--HTCCEEEEEETT
T ss_pred             CCccEEEEECCCHHHHHHHHHHHH--cCCCeEEEEECC
Confidence            345799999999999999998887  688 89999986

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=95.20  E-value=0.042  Score=37.12  Aligned_cols=33  Identities=12%  Similarity=0.287  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC---cEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC---DVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~---~v~vie~~~   62 (90)
                      .+|.|||+|..|...+..|.+  .|.   +|+++|+++
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~--~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIA--NGYDPNRICVTNRSL   39 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHH--TTCCGGGEEEECSSS
T ss_pred             CEEEEEcccHHHHHHHHHHHH--CCCCCCeEEEEeCCH
Confidence            479999999999999999998  677   899999763

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=95.19  E-value=0.031  Score=35.64  Aligned_cols=31  Identities=32%  Similarity=0.518  Sum_probs=28.1

Q ss_pred             cEEEEC-CCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILG-AGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG-~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +++|+| +|..|...+..|.+  .+.+|++++++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~--~g~~V~~~~r~   33 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLAT--LGHEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHT--TTCEEEEEESS
T ss_pred             eEEEEcCCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            689999 99999999999998  78899999875

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=95.19  E-value=0.021  Score=41.64  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|..|+.+|..|++  .+.+|+++++.+.
T Consensus       355 ~k~V~ViGgG~~g~E~A~~L~~--~g~~Vtlv~~~~~  389 (521)
T 1hyu_A          355 GKRVAVIGGGNSGVEAAIDLAG--IVEHVTLLEFAPE  389 (521)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHH--HBSEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--hCCEEEEEEeCcc
Confidence            4689999999999999999998  6889999997643

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=95.19  E-value=0.025  Score=40.41  Aligned_cols=34  Identities=35%  Similarity=0.445  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCC-CCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~-g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..+.+  . +.+|+++++.+
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~--~~g~~Vtlv~~~~  193 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLAD--MWGIDTTVVELAD  193 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--HHCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--hcCCcEEEEEccC
Confidence            4689999999999999999998  7 89999999864

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=95.19  E-value=0.016  Score=39.02  Aligned_cols=32  Identities=38%  Similarity=0.447  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|.|||.|..|...|..|.+  .|.+|+++++++
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~--~G~~V~~~dr~~   34 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVR--AGFDVTVWNRNP   34 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHH--HTCCEEEECSSG
T ss_pred             eEEEEccCHHHHHHHHHHHH--CCCeEEEEcCCH
Confidence            79999999999999999998  789999999864

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=95.16  E-value=0.028  Score=38.44  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=27.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+|.+||-|..|...|..|.+  .|.+|+++|+.+.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~--~G~~V~v~dr~~~   39 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLE--AGYELVVWNRTAS   39 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH--TTCEEEEC-----
T ss_pred             CcEEEEecHHHHHHHHHHHHH--CCCeEEEEeCCHH
Confidence            479999999999999999999  8999999998643

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=95.16  E-value=0.033  Score=36.86  Aligned_cols=34  Identities=32%  Similarity=0.398  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++++..
T Consensus       147 ~~~v~viG~g~~~~e~a~~l~~--~g~~v~~~~~~~  180 (315)
T 3r9u_A          147 NKEVAVLGGGDTALEEALYLAN--ICSKIYLIHRRD  180 (315)
T ss_dssp             TSEEEEECCBHHHHHHHHHHHT--TSSEEEEECSSS
T ss_pred             cCEEEEECCCHHHHHHHHHHHh--hCCEEEEEEeCC
Confidence            4689999999999999999998  789999998764

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.16  E-value=0.031  Score=38.52  Aligned_cols=33  Identities=18%  Similarity=0.212  Sum_probs=28.9

Q ss_pred             CcEEEECCCHHHHH-HHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLS-TALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~-~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +++.+||.|.+|++ +|..|.+  .|.+|++.|+..
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~--~G~~V~~~D~~~   38 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKE--AGFEVSGCDAKM   38 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred             cEEEEEEECHHHHHHHHHHHHh--CCCEEEEEcCCC
Confidence            47999999999996 7778888  899999999864

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=95.16  E-value=0.017  Score=41.74  Aligned_cols=34  Identities=29%  Similarity=0.457  Sum_probs=29.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||.|..|+..|..|.+..+|.+|+++|++
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~   39 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVN   39 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            4799999999999999999983227899999875

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=95.15  E-value=0.033  Score=37.04  Aligned_cols=31  Identities=29%  Similarity=0.500  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||+|..|...|..|.+  .|.+|++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~~~   32 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRR--RGHYLIGVSRQ   32 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHH--CCCEEEEEECC
Confidence            68999999999999999998  78899999875

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=95.15  E-value=0.039  Score=39.75  Aligned_cols=35  Identities=17%  Similarity=0.273  Sum_probs=29.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      ...+|+|||+|..|+-+|..+.+  .|. +|+++++..
T Consensus       263 ~gk~VvVIGgG~~a~d~A~~~~r--~Ga~~Vtiv~r~~  298 (456)
T 2vdc_G          263 AGKHVVVLGGGDTAMDCVRTAIR--QGATSVKCLYRRD  298 (456)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHH--TTCSEEEEECSSC
T ss_pred             CCCEEEEECCChhHHHHHHHHHH--cCCCEEEEEEeCC
Confidence            34689999999999999998888  676 599998764

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=95.14  E-value=0.041  Score=37.47  Aligned_cols=34  Identities=29%  Similarity=0.346  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|+|+|-+|..++..|.+  .|.+|+|+.+..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~--~G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKK--QGLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence            4689999999999999999998  788899998864

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.13  E-value=0.052  Score=38.13  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=27.9

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhhCCCC--cEEEEccC
Q psy1704          27 NHKVAILGA-GIIGLSTALELQRRFPNC--DVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~-G~~Gl~~A~~l~~~~~g~--~v~vie~~   61 (90)
                      ..+|+|||+ |..|..+|+.+..  .+.  +++++|..
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~--~g~~~evvLiDi~   43 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAM--MRLTPNLCLYDPF   43 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHH--TTCCSCEEEECSC
T ss_pred             CCEEEEECCCChHHHHHHHHHHh--cCCCCEEEEEeCC
Confidence            458999997 9999999998887  553  79999864

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.11  E-value=0.032  Score=38.07  Aligned_cols=31  Identities=39%  Similarity=0.578  Sum_probs=27.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|+|||+|..|...|..|.   .|.+|++++++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~---~g~~V~~~~r~   33 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS---LYHDVTVVTRR   33 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH---TTSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHh---cCCceEEEECC
Confidence            48999999999999999888   27899999875

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=95.09  E-value=0.023  Score=39.66  Aligned_cols=33  Identities=18%  Similarity=0.184  Sum_probs=29.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCC-------CcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPN-------CDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g-------~~v~vie~~~   62 (90)
                      .+|.|||+|..|...|..|.+  .|       .+|++++++.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~--~G~~~~~~~~~V~~~~r~~   61 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGT--NAKNNYLFENEVRMWIRDE   61 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHH--HHHHCTTBCSCEEEECCSC
T ss_pred             CEEEEECcCHHHHHHHHHHHH--cCCccCCCCCeEEEEECCh
Confidence            379999999999999999988  67       8999998764

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=95.08  E-value=0.037  Score=36.89  Aligned_cols=31  Identities=29%  Similarity=0.355  Sum_probs=27.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNC--DVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~   61 (90)
                      +|.|||+|..|...|..|.+  .|.  +|+++|++
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~--~g~~~~V~~~d~~   35 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRR--SGFKGKIYGYDIN   35 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHH--TTCCSEEEEECSC
T ss_pred             EEEEEecCHHHHHHHHHHHh--cCCCcEEEEEeCC
Confidence            69999999999999999998  677  89999875

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=95.07  E-value=0.028  Score=36.99  Aligned_cols=31  Identities=19%  Similarity=0.264  Sum_probs=28.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~   61 (90)
                      +|.|||+|..|...|..|.+  .| .+|++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~--~g~~~v~~~~r~   33 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVK--QGGYRIYIANRG   33 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--HCSCEEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHH--CCCCeEEEECCC
Confidence            68999999999999999988  68 899999875

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=95.04  E-value=0.04  Score=39.32  Aligned_cols=34  Identities=21%  Similarity=0.203  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++.+
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~--~g~~Vt~v~~~~  203 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHG--LGVKTTLIYRGK  203 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCC
Confidence            4689999999999999999998  799999999864

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=95.02  E-value=0.04  Score=39.58  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++.+
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~--~g~~Vtli~~~~  224 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHG--LGVKTTLLHRGD  224 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHH--cCCeEEEEECCC
Confidence            4689999999999999999998  799999999864

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=95.01  E-value=0.024  Score=37.98  Aligned_cols=32  Identities=25%  Similarity=0.435  Sum_probs=28.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...|..|.+  .|.+|++++++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~~~   37 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLK--AGYSLVVSDRN   37 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH--TTCEEEEECSC
T ss_pred             ceEEEECchHHHHHHHHHHHh--CCCEEEEEeCC
Confidence            379999999999999999998  78899999875

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=95.00  E-value=0.036  Score=38.79  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=28.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+++|+|+|.+|+.++..+..  .|.+|+++++.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~--~Ga~V~v~dr~  199 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVG--LGAQVQIFDIN  199 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCEEEEEeCC
Confidence            689999999999999999988  78899999865

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=94.99  E-value=0.041  Score=38.80  Aligned_cols=35  Identities=29%  Similarity=0.387  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      ...+|+|||+|-.|..+|..|..  .|. +++|+|.+.
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~--aGVg~ItlvD~D~   68 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIA--WGVRKITFVDNGT   68 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECCCB
T ss_pred             hCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEecCCE
Confidence            34689999999999999999999  787 799999763

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=94.97  E-value=0.029  Score=38.31  Aligned_cols=31  Identities=29%  Similarity=0.415  Sum_probs=27.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCC--CcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPN--CDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g--~~v~vie~~   61 (90)
                      +|+|||+|..|..+|..|.+  .+  .+|+++|.+
T Consensus         3 kI~VIGaG~~G~~la~~L~~--~g~~~~V~l~d~~   35 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIA--QGVADDYVFIDAN   35 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--HTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCCCEEEEEcCC
Confidence            79999999999999999988  56  589999875

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=94.97  E-value=0.072  Score=37.22  Aligned_cols=35  Identities=20%  Similarity=0.379  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..++|+|+|+|..|..++..+.+  .|.+|.++|...
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~--~G~~vi~~d~~~   47 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKE--MGYKIAVLDPTK   47 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEeCCC
Confidence            45689999999999999999998  899999998753

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=94.94  E-value=0.017  Score=39.70  Aligned_cols=33  Identities=27%  Similarity=0.200  Sum_probs=29.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCC-------CcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPN-------CDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g-------~~v~vie~~~   62 (90)
                      .+|.|||+|..|...|..|.+  .|       .+|++++++.
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~--~g~~~~~~~~~V~~~~r~~   48 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGG--NAAQLAQFDPRVTMWVFEE   48 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--HHHHCTTEEEEEEEECCCC
T ss_pred             CeEEEECCCHHHHHHHHHHHh--cCCcccCCCCeEEEEEcCh
Confidence            479999999999999999988  67       7899998764

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=94.93  E-value=0.026  Score=38.95  Aligned_cols=35  Identities=29%  Similarity=0.284  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      ...+|+|||+|-.|..+|..|.+  .|. +++|+|.+.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~--aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTR--CGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHH--HTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHH--cCCCEEEEECCCc
Confidence            44699999999999999999999  776 799999864

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=94.92  E-value=0.031  Score=37.42  Aligned_cols=32  Identities=19%  Similarity=0.215  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|.|||+|..|...|..|.+  .|.+|+++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~--~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMK--HGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHH--TTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence            68999999999999999998  788999998753

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=94.92  E-value=0.023  Score=39.94  Aligned_cols=30  Identities=23%  Similarity=0.261  Sum_probs=26.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEc
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIA   59 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie   59 (90)
                      +|.|||+|..|...|..|++. .|.+|++++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~-~G~~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASR-DGVEVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTS-TTEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCCEEEEEe
Confidence            799999999999999999761 288999998

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=94.91  E-value=0.044  Score=38.40  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=30.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+++|+|+|..|..++..+..  .|.+|+++|++
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~--~Ga~V~~~d~~  198 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALG--MGAQVTILDVN  198 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEECC
Confidence            34689999999999999999988  78899999875

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=94.90  E-value=0.046  Score=37.36  Aligned_cols=33  Identities=12%  Similarity=0.222  Sum_probs=29.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ..+++|+|+|.+|..++..|.+  .|. +|+|+++.
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~--~G~~~V~v~nR~  174 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLS--TAAERIDMANRT  174 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHT--TTCSEEEEECSS
T ss_pred             CCEEEEECcHHHHHHHHHHHHH--CCCCEEEEEeCC
Confidence            4589999999999999999998  787 89999875

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=94.90  E-value=0.04  Score=36.68  Aligned_cols=34  Identities=32%  Similarity=0.395  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..|.+  .+.+|+++++..
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~--~~~~v~~~~~~~  187 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEP--IAKEVSIIHRRD  187 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTT--TBSEEEEECSSS
T ss_pred             CCEEEEECCCHhHHHHHHHHHh--hCCeEEEEEecC
Confidence            4689999999999999999998  788999998764

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=94.90  E-value=0.064  Score=37.52  Aligned_cols=34  Identities=15%  Similarity=0.485  Sum_probs=29.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~   61 (90)
                      ...+|.|||+|..|..+|+.+..  .+.  +++++|..
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~--~~~~~el~L~Di~   53 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILM--KDLADELALVDVI   53 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCCceEEEEeCC
Confidence            44689999999999999999988  565  79999864

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.89  E-value=0.032  Score=40.06  Aligned_cols=34  Identities=24%  Similarity=0.289  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+|+|+|+|.+|..+|..|..  .|. +|+++|+.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~--~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLD--LGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--HTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHh--CCCCeEEEEECC
Confidence            45799999999999999999988  677 79999986

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=94.86  E-value=0.058  Score=37.79  Aligned_cols=34  Identities=18%  Similarity=0.440  Sum_probs=28.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~   61 (90)
                      ...+|.|||+|..|..+|+.+.+  .+.  ++.++|..
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~--~g~~~ev~L~Di~   55 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLM--KDLADEVALVDVM   55 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHH--HCCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCCCeEEEEECC
Confidence            34689999999999999999988  565  79999864

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=94.84  E-value=0.048  Score=39.26  Aligned_cols=36  Identities=22%  Similarity=0.242  Sum_probs=28.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhh------------------CCCC-cEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRR------------------FPNC-DVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~------------------~~g~-~v~vie~~~   62 (90)
                      ..+++|||+|..|+-+|..|.+.                  ..+. +|+|+++..
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~  199 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG  199 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCC
Confidence            46899999999999999999830                  0466 799998764

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=94.81  E-value=0.048  Score=38.44  Aligned_cols=34  Identities=26%  Similarity=0.335  Sum_probs=30.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+++|+|+|.+|..++..+..  .|.+|+++|+.
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~--~Ga~V~~~d~~  200 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANG--MGATVTVLDIN  200 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEeCC
Confidence            45689999999999999999988  78899999865

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=94.81  E-value=0.043  Score=36.76  Aligned_cols=33  Identities=27%  Similarity=0.397  Sum_probs=28.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+++|||+|..|+-+|..|.+  .+ +|+++.+.
T Consensus       162 ~~~~v~VvG~G~~g~e~a~~l~~--~~-~v~~v~~~  194 (357)
T 4a9w_A          162 AGMRVAIIGGGNSGAQILAEVST--VA-ETTWITQH  194 (357)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTT--TS-EEEEECSS
T ss_pred             CCCEEEEECCCcCHHHHHHHHHh--hC-CEEEEECC
Confidence            34689999999999999999998  56 69999875

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=94.81  E-value=0.036  Score=38.19  Aligned_cols=33  Identities=15%  Similarity=0.410  Sum_probs=28.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~~   62 (90)
                      .+|.|||+|..|..+|+.+..  .+.  +++++|.+.
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~--~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISA--KGIADRLVLLDLSE   49 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--HTCCSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHh--cCCCCEEEEEcCCc
Confidence            589999999999999998887  566  899999864

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=94.80  E-value=0.053  Score=36.85  Aligned_cols=34  Identities=29%  Similarity=0.397  Sum_probs=30.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...++.|||.|..|..+|..+..  .|.+|+++++.
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~--~G~~V~~~d~~  189 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAA--LGANVKVGARS  189 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCCEEEEEcccHHHHHHHHHHHH--CCCEEEEEECC
Confidence            45689999999999999999988  78899999875

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=94.75  E-value=0.055  Score=39.69  Aligned_cols=33  Identities=15%  Similarity=0.339  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.|||.|..|...|..|.+  .|.+|+++++++
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~--~G~~V~v~dr~~   37 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMND--HGFVVCAFNRTV   37 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH--TTCCEEEECSST
T ss_pred             CEEEEEChhHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence            479999999999999999999  899999999864

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=94.75  E-value=0.064  Score=37.57  Aligned_cols=33  Identities=33%  Similarity=0.350  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.|||.|..|.+.|..|.+  .|.+|+++|+++
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~--~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHA--ANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHH--TTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence            479999999999999999999  789999999763

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=94.72  E-value=0.029  Score=36.79  Aligned_cols=33  Identities=18%  Similarity=0.308  Sum_probs=29.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..|.+  .+ +|+++++..
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~--~g-~v~~v~~~~  173 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPD--WG-ETTFFTNGI  173 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGG--TS-EEEEECTTT
T ss_pred             CCEEEEEecCccHHHHHHHhhh--cC-cEEEEECCC
Confidence            4689999999999999999998  67 999998754

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=94.72  E-value=0.02  Score=37.27  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=28.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+++|+|+|..|...+..|.+  .+. |+++|+++
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~--~g~-v~vid~~~   41 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRG--SEV-FVLAEDEN   41 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTT--SEE-EEEESCGG
T ss_pred             CCEEEEECCChHHHHHHHHHHh--CCe-EEEEECCH
Confidence            3579999999999999999988  788 99999864

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=94.71  E-value=0.052  Score=37.37  Aligned_cols=34  Identities=24%  Similarity=0.433  Sum_probs=27.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|..+|+.+.+.....+++++|.+
T Consensus         7 ~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~   40 (316)
T 1ldn_A            7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            5899999999999999999873222379999975

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=94.70  E-value=0.045  Score=41.89  Aligned_cols=32  Identities=34%  Similarity=0.460  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...|..+.+  .|.+|+++|.+
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~--aG~~V~l~D~~  344 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALIL--SNYPVILKEVN  344 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHT--TTCCEEEECSS
T ss_pred             cEEEEEcCCHhhHHHHHHHHh--CCCEEEEEECC
Confidence            479999999999999999999  89999999975

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=94.68  E-value=0.045  Score=37.74  Aligned_cols=32  Identities=28%  Similarity=0.482  Sum_probs=27.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCC--CcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPN--CDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g--~~v~vie~~   61 (90)
                      .+|+|||+|..|..+++.|..  .+  .++.++|.+
T Consensus         7 ~KI~IIGaG~vG~~la~~l~~--~~~~~ei~L~Di~   40 (317)
T 3d0o_A            7 NKVVLIGNGAVGSSYAFSLVN--QSIVDELVIIDLD   40 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--HCSCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCC
Confidence            589999999999999999987  45  479999864

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=94.68  E-value=0.071  Score=33.13  Aligned_cols=33  Identities=36%  Similarity=0.542  Sum_probs=29.1

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+++|.|+ |..|..++..|.+  .|.+|++++++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~--~g~~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQ--AGYEVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH--TTCEEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHH--CCCeEEEEEeCh
Confidence            47999998 9999999999998  789999998763

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=94.67  E-value=0.068  Score=35.59  Aligned_cols=32  Identities=28%  Similarity=0.414  Sum_probs=28.7

Q ss_pred             cEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|+|.|| |..|..++..|.+  .|.+|+++.+++
T Consensus         2 kILVTGatGfIG~~L~~~L~~--~G~~V~~l~R~~   34 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNA--RGHEVTLVSRKP   34 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHH--CCCEEEEEECCC
Confidence            6999998 9999999999999  899999997753

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=94.65  E-value=0.06  Score=36.50  Aligned_cols=34  Identities=32%  Similarity=0.440  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...++.|||.|..|..+|..+..  .|.+|+++++.
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~--~G~~V~~~dr~  187 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAA--LGAKVKVGARE  187 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHh--CCCEEEEEECC
Confidence            44689999999999999999988  78899999875

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=94.64  E-value=0.038  Score=37.18  Aligned_cols=33  Identities=27%  Similarity=0.344  Sum_probs=29.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+++|+|+|.+|..++..|.+  .|.+|+|+++.
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~--~G~~v~v~~R~  151 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQ--AQQNIVLANRT  151 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHH--TTCEEEEEESS
T ss_pred             CCEEEEECCcHHHHHHHHHHHH--CCCEEEEEECC
Confidence            4589999999999999999998  78899999875

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=94.62  E-value=0.048  Score=38.07  Aligned_cols=33  Identities=21%  Similarity=0.374  Sum_probs=28.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~   61 (90)
                      ..+|.|||+|..|..+|+.|.+  .+.  ++.++|..
T Consensus         9 ~~kV~ViGaG~vG~~~a~~l~~--~~~~~el~l~D~~   43 (326)
T 3vku_A            9 HQKVILVGDGAVGSSYAYAMVL--QGIAQEIGIVDIF   43 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--HTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCCCeEEEEeCC
Confidence            3589999999999999999988  455  79999864

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=94.61  E-value=0.041  Score=37.81  Aligned_cols=31  Identities=19%  Similarity=0.333  Sum_probs=27.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNC--DVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~   61 (90)
                      +|.|+|+|..|..+|+.|.+  .+.  +++++|..
T Consensus         2 kI~ViGaG~vG~~la~~l~~--~~~~~~v~L~D~~   34 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLL--NLDVDEIALVDIA   34 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--HSCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCCCeEEEEECC
Confidence            69999999999999999988  565  89999875

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=94.60  E-value=0.059  Score=39.53  Aligned_cols=34  Identities=26%  Similarity=0.341  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+++|+|+|..|..+|..|.+  .+.+|+++|+++.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~--~g~~v~vid~d~~  382 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDR--KPVPFILIDRQES  382 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCCEEEEECChH
Confidence            689999999999999999999  8999999998754

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=94.60  E-value=0.047  Score=37.80  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=28.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+|+|||+|..|..+++.|.......++.++|.+
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            35899999999999999999873222379999864

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=94.56  E-value=0.041  Score=36.78  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=29.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      ..+|+|+|+|-.|..++..|.+  .|. +++|+|.+.
T Consensus        28 ~~~VlvvG~GglG~~va~~La~--~Gvg~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAG--AGVGTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHH--TTCSEEEEECCCB
T ss_pred             cCcEEEEccCHHHHHHHHHHHH--cCCCeEEEEeCCC
Confidence            4689999999999999999999  787 799998763

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=94.55  E-value=0.054  Score=39.23  Aligned_cols=31  Identities=29%  Similarity=0.499  Sum_probs=27.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||.|..|+..|..|++   |.+|+++|.+
T Consensus        37 mkIaVIGlG~mG~~lA~~La~---G~~V~~~D~~   67 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ---NHEVVALDIV   67 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT---TSEEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHc---CCeEEEEecC
Confidence            489999999999999998886   7899999975

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=94.52  E-value=0.077  Score=36.78  Aligned_cols=33  Identities=39%  Similarity=0.404  Sum_probs=29.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.|||.|..|.+.|..|.+  .|.+|+++++..
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~--~G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKD--SGVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHH--TTCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHH--CcCEEEEEECCh
Confidence            479999999999999999998  788999998753

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=94.51  E-value=0.069  Score=38.73  Aligned_cols=32  Identities=16%  Similarity=0.388  Sum_probs=29.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||.|..|...|..|.+  .|.+|+++++.
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~--~G~~V~v~dr~   37 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVES--RGYTVAIYNRT   37 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             CcEEEEeeHHHHHHHHHHHHh--CCCEEEEEcCC
Confidence            479999999999999999998  78999999875

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=94.50  E-value=0.071  Score=33.56  Aligned_cols=31  Identities=32%  Similarity=0.446  Sum_probs=27.9

Q ss_pred             cEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|+|.|+ |..|..++..|.+  .|.+|+++.++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~--~g~~V~~~~R~   33 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKN--RGHEVTAIVRN   33 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             eEEEEcCCchhHHHHHHHHHh--CCCEEEEEEcC
Confidence            6999996 9999999999998  78999999876

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=94.50  E-value=0.072  Score=36.04  Aligned_cols=35  Identities=17%  Similarity=0.266  Sum_probs=29.1

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+|+|.|+ |..|..++..|.+  .|.+|.++++..
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~--~G~~V~~~~r~~   53 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRT--QGRTVRGFDLRP   53 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHh--CCCEEEEEeCCC
Confidence            4468999998 9999999999999  789999998764

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=94.47  E-value=0.062  Score=39.06  Aligned_cols=32  Identities=16%  Similarity=0.348  Sum_probs=29.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||.|..|...|..|.+  .|.+|+++++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~--~G~~V~v~dr~   34 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMND--HGFVVCAFNRT   34 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             CeEEEEChHHHHHHHHHHHHH--CCCeEEEEeCC
Confidence            379999999999999999998  89999999875

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=94.46  E-value=0.049  Score=37.78  Aligned_cols=32  Identities=31%  Similarity=0.482  Sum_probs=27.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~~   62 (90)
                      +|.|||+|..|..+|+.+.+  .+.  +++++|..+
T Consensus         2 kv~ViGaG~vG~~~a~~l~~--~~~~~el~l~D~~~   35 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVAR--QDVAKEVVMVDIKD   35 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--HTCSSEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCch
Confidence            69999999999999999988  455  899999764

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=94.39  E-value=0.051  Score=38.59  Aligned_cols=30  Identities=33%  Similarity=0.532  Sum_probs=27.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||+|..|+..|..|.+   |.+|+++|++
T Consensus         2 kI~VIG~G~vG~~~A~~La~---G~~V~~~d~~   31 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL---QNEVTIVDIL   31 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT---TSEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHhC---CCEEEEEECC
Confidence            69999999999999999986   6889999875

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=94.34  E-value=0.054  Score=36.44  Aligned_cols=33  Identities=18%  Similarity=0.266  Sum_probs=28.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+++|||+|.+|...+..|.+  .|.+|+++++.
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~--~g~~V~v~~r~  161 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVK--EGAKVFLWNRT  161 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHH--HTCEEEEECSS
T ss_pred             CCEEEEECchHHHHHHHHHHHH--cCCEEEEEECC
Confidence            3589999999999999999988  57799999875

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=94.34  E-value=0.066  Score=38.96  Aligned_cols=31  Identities=26%  Similarity=0.534  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||+|..|...|..|.+  .|.+|+++++.
T Consensus         3 kIgVIG~G~mG~~lA~~La~--~G~~V~v~dr~   33 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAE--KGFKVAVFNRT   33 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             EEEEEChHHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            69999999999999999998  89999999875

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=94.32  E-value=0.068  Score=35.14  Aligned_cols=32  Identities=16%  Similarity=0.339  Sum_probs=28.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...+..|.+  .+.+|.+++++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~--~g~~v~~~~~~   35 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQ--TPHELIISGSS   35 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT--SSCEEEEECSS
T ss_pred             cEEEEECCCHHHHHHHHHHHh--CCCeEEEECCC
Confidence            379999999999999999988  67889999875

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=94.31  E-value=0.077  Score=33.59  Aligned_cols=31  Identities=32%  Similarity=0.508  Sum_probs=28.0

Q ss_pred             cEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|+|.|+ |..|..++..|.+  .|.+|+++.+.
T Consensus         2 kilVtGatG~iG~~l~~~L~~--~g~~V~~~~R~   33 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARR--RGHEVLAVVRD   33 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             EEEEEcCCCHHHHHHHHHHHH--CCCEEEEEEec
Confidence            5999998 9999999999999  78999999875

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=94.30  E-value=0.095  Score=34.81  Aligned_cols=34  Identities=35%  Similarity=0.465  Sum_probs=30.1

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|+|.|+ |..|..++..|.+  .|.+|+++++..
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~--~g~~V~~~~r~~   41 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVA--SGEEVTVLDDLR   41 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH--TTCCEEEECCCS
T ss_pred             CCeEEEECCCChHHHHHHHHHHH--CCCEEEEEecCC
Confidence            358999999 9999999999999  789999998764

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=94.29  E-value=0.064  Score=34.13  Aligned_cols=33  Identities=24%  Similarity=0.411  Sum_probs=29.0

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|+|.|+ |..|..++..|.+  .|.+|+++++..
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~--~g~~V~~~~r~~   38 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALN--RGFEVTAVVRHP   38 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHT--TTCEEEEECSCG
T ss_pred             CEEEEEcCCchHHHHHHHHHHH--CCCEEEEEEcCc
Confidence            47999996 8899999999998  789999998864

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=94.29  E-value=0.058  Score=35.63  Aligned_cols=32  Identities=25%  Similarity=0.369  Sum_probs=28.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCc-EEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCD-VTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~-v~vie~~   61 (90)
                      .+|.|||+|..|...|..|.+  .|.+ |.+++++
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~--~g~~~v~~~~~~   43 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYR--KGFRIVQVYSRT   43 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--HTCCEEEEECSS
T ss_pred             CeEEEEcCCHHHHHHHHHHHH--CCCeEEEEEeCC
Confidence            479999999999999999988  6788 8899875

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=94.27  E-value=0.081  Score=35.16  Aligned_cols=31  Identities=29%  Similarity=0.371  Sum_probs=28.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +++|||+|..|...+..|.+  .|.+|+++++.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~--~g~~v~v~~r~  148 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALRE--AGLEVWVWNRT  148 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             eEEEECCcHHHHHHHHHHHH--CCCEEEEEECC
Confidence            89999999999999999988  67799999875

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=94.24  E-value=0.089  Score=35.86  Aligned_cols=34  Identities=24%  Similarity=0.247  Sum_probs=29.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+++|+|+|-+|..++..|.+  .|. +|+|+++.
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~--~G~~~v~i~~R~  160 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVT--HGVQKLQVADLD  160 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHH--CCCCEEEEEECC
Confidence            34689999999999999999998  787 69999775

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=94.23  E-value=0.058  Score=35.51  Aligned_cols=30  Identities=20%  Similarity=0.358  Sum_probs=27.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD   60 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~   60 (90)
                      +|.|||+|..|...|..|.+  .|.+|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~--~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRS--RGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHH--TTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHH--CCCeEEEeCC
Confidence            68999999999999999998  7889998876

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=94.23  E-value=0.053  Score=41.42  Aligned_cols=32  Identities=25%  Similarity=0.356  Sum_probs=29.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...|..+.+  .|.+|+++|.+
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~--aG~~V~l~D~~  346 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSAS--KGTPILMKDIN  346 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             CEEEEECCChhhHHHHHHHHh--CCCEEEEEECC
Confidence            479999999999999999999  89999999975

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=94.22  E-value=0.068  Score=36.12  Aligned_cols=32  Identities=25%  Similarity=0.466  Sum_probs=28.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+++|+|+|-+|..+|..|.+  .| +|++++++
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~--~G-~V~v~~r~  159 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAK--DN-NIIIANRT  159 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTS--SS-EEEEECSS
T ss_pred             CCEEEEECchHHHHHHHHHHHH--CC-CEEEEECC
Confidence            4579999999999999999998  78 99999764

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.21  E-value=0.056  Score=37.96  Aligned_cols=34  Identities=32%  Similarity=0.477  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      ..+|+|||+|..|..+|..|..  .|. +++|+|.+.
T Consensus       118 ~~~VlvvG~GglGs~va~~La~--aGvg~i~lvD~D~  152 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILAT--SGIGEIILIDNDQ  152 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--HTCSEEEEEECCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCCeEEEECCCc
Confidence            4689999999999999999999  787 799999763

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=94.21  E-value=0.014  Score=39.05  Aligned_cols=32  Identities=25%  Similarity=0.261  Sum_probs=29.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||.|..|.+.|..|.+  .|.+|+.+++.
T Consensus         7 mkI~IIG~G~~G~sLA~~L~~--~G~~V~~~~~~   38 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKLDS--VGHYVTVLHAP   38 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHHHH--TTCEEEECSSG
T ss_pred             cEEEEEeeCHHHHHHHHHHHH--CCCEEEEecCH
Confidence            489999999999999999999  89999998864

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=94.21  E-value=0.043  Score=39.69  Aligned_cols=32  Identities=28%  Similarity=0.502  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+..|||.|..|+..|..|++  .|.+|+++|.+
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~--~G~~V~~~D~~   43 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAK--HGVDVLGVDIN   43 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CccEEEeeCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            478999999999999999999  89999999976

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=94.15  E-value=0.088  Score=36.55  Aligned_cols=34  Identities=18%  Similarity=0.317  Sum_probs=29.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+++|+|+|-+|..++..|.+  .|. +|+|+.+.
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~--~Ga~~V~i~nR~  187 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAAL--DGVKEISIFNRK  187 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHH--TTCSEEEEEECS
T ss_pred             cCCEEEEECCChHHHHHHHHHHH--CCCCEEEEEECC
Confidence            34689999999999999999998  787 79999876

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=94.13  E-value=0.084  Score=35.43  Aligned_cols=31  Identities=23%  Similarity=0.312  Sum_probs=28.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      +++|+|+|-+|..++..|.+  .|. +|+|+++.
T Consensus       110 ~vliiGaGg~a~ai~~~L~~--~G~~~I~v~nR~  141 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQ--MGVKDIWVVNRT  141 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--TTCCCEEEEESC
T ss_pred             eEEEECcHHHHHHHHHHHHH--cCCCEEEEEeCC
Confidence            89999999999999999998  787 89999875

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=94.12  E-value=0.067  Score=36.45  Aligned_cols=33  Identities=30%  Similarity=0.254  Sum_probs=29.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ..+++|+|+|-+|..++..|.+  .|. +|+|+.+.
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~--~G~~~v~v~~R~  150 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYK--IVRPTLTVANRT  150 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHT--TCCSCCEEECSC
T ss_pred             CCEEEEECCcHHHHHHHHHHHH--CCCCEEEEEeCC
Confidence            4589999999999999999998  787 89999875

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=94.11  E-value=0.068  Score=42.18  Aligned_cols=34  Identities=26%  Similarity=0.238  Sum_probs=29.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      ..+++|||+|..|+-+|..+.+  .|. +|+++++..
T Consensus       332 ~~~VvVIGgG~~g~e~A~~~~~--~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALR--CGARRVFLVFRKG  366 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHH--TTCSEEEEECSSC
T ss_pred             CCcEEEECCChHHHHHHHHHHH--cCCCEEEEEEecC
Confidence            3489999999999999999998  786 899998763

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=94.11  E-value=0.075  Score=40.11  Aligned_cols=33  Identities=30%  Similarity=0.431  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ..+|+|||+|-.|..+|..|.+  .|. +++|+|.+
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~--aGVG~ItLvD~D  360 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIA--WGVRKITFVDNG  360 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHT--TTCCEEEEECCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCCEEEEECCC
Confidence            4689999999999999999999  787 79999876

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=94.10  E-value=0.065  Score=37.90  Aligned_cols=32  Identities=31%  Similarity=0.477  Sum_probs=29.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEc
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIA   59 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie   59 (90)
                      +..+|+|+|+|..|...+..+++  .|.+|.++|
T Consensus        23 ~~~~I~ilGgG~lg~~l~~aa~~--lG~~v~~~d   54 (403)
T 3k5i_A           23 NSRKVGVLGGGQLGRMLVESANR--LNIQVNVLD   54 (403)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHH--HTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEE
Confidence            45689999999999999999998  799999999

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=94.10  E-value=0.065  Score=35.82  Aligned_cols=34  Identities=29%  Similarity=0.502  Sum_probs=28.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...|..|.+...+.+|+++|++
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~   40 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRS   40 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSS
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            4799999999999999999873226789999875

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=94.08  E-value=0.079  Score=40.12  Aligned_cols=34  Identities=29%  Similarity=0.397  Sum_probs=30.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      ..+|+|||+|-.|..+|..|..  .|. +++|+|.+.
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~--aGVG~ItLvD~D~  360 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIA--WGVRKITFVDNGT  360 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCC
Confidence            4689999999999999999999  787 799999863

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=94.06  E-value=0.059  Score=34.85  Aligned_cols=34  Identities=29%  Similarity=0.293  Sum_probs=28.8

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhhCCC-CcEEEEccCC
Q psy1704          27 NHKVAILGA-GIIGLSTALELQRRFPN-CDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~-G~~Gl~~A~~l~~~~~g-~~v~vie~~~   62 (90)
                      .++++|.|+ |..|..++..|.+  .| .+|+++.++.
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~--~G~~~V~~~~R~~   58 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLAD--KQTIKQTLFARQP   58 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTT--CTTEEEEEEESSG
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHh--CCCceEEEEEcCh
Confidence            457999995 8899999999998  78 7999998764

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=94.01  E-value=0.1  Score=37.84  Aligned_cols=36  Identities=31%  Similarity=0.525  Sum_probs=30.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..++|+|||+|.+|..++..|.+...+.+|+++-+.
T Consensus       245 ~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~  280 (501)
T 4b63_A          245 KPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRD  280 (501)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSS
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCC
Confidence            346899999999999999999875457789998875

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=94.00  E-value=0.13  Score=32.64  Aligned_cols=33  Identities=24%  Similarity=0.373  Sum_probs=28.2

Q ss_pred             CcEEEECC-CHHHHHHHHHHH-hhCCCCcEEEEccCC
Q psy1704          28 HKVAILGA-GIIGLSTALELQ-RRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~-~~~~g~~v~vie~~~   62 (90)
                      +.++|.|+ |..|..++..|. +  .|.+|+++.++.
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~--~g~~V~~~~r~~   40 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTY--TDMHITLYGRQL   40 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHH--CCCEEEEEESSH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhc--CCceEEEEecCc
Confidence            35999995 889999999999 7  799999998763

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=94.00  E-value=0.14  Score=36.47  Aligned_cols=34  Identities=18%  Similarity=0.288  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+|+|+|+|..|...+..+++  .|.+|.++|..
T Consensus        34 ~~~~IlIlG~G~lg~~~~~aa~~--lG~~v~v~d~~   67 (419)
T 4e4t_A           34 PGAWLGMVGGGQLGRMFCFAAQS--MGYRVAVLDPD   67 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEECCC
Confidence            34689999999999999999998  89999999865

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=93.96  E-value=0.067  Score=36.98  Aligned_cols=32  Identities=22%  Similarity=0.289  Sum_probs=27.3

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCC-------cEEEEccC
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNC-------DVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~-------~v~vie~~   61 (90)
                      .+|+|+|+ |..|..++..|.+  .+.       ++.++|..
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~~--~~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIAN--GDMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHT--TTTTCTTCCEEEEEECCS
T ss_pred             CEEEEECCCChHHHHHHHHHHh--CCCcCCCCCCEEEEEcCC
Confidence            48999998 9999999999987  554       79999865

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=93.96  E-value=0.11  Score=35.24  Aligned_cols=34  Identities=21%  Similarity=0.298  Sum_probs=29.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+++|+|+|-+|..++..|.+  .|. +|+|+.+.
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~--~G~~~v~i~~R~  153 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQ--AGPSELVIANRD  153 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHH--TCCSEEEEECSC
T ss_pred             cCCEEEEECccHHHHHHHHHHHH--cCCCEEEEEeCC
Confidence            34689999999999999999998  785 89998774

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=93.95  E-value=0.12  Score=35.90  Aligned_cols=35  Identities=20%  Similarity=0.242  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...++.|||.|..|...|..+..  .|.+|+++++..
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~--~G~~V~~~d~~~  183 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKG--FNMRILYYSRTR  183 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHh--CCCEEEEECCCc
Confidence            44689999999999999999998  789999999764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=93.95  E-value=0.049  Score=41.39  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=30.3

Q ss_pred             CCcEEEEC--CCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILG--AGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG--~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|+|||  +|..|+-+|..|.+  .|.+|+++++..
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~--~G~~Vtlv~~~~  563 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLAT--AGHEVTIVSGVH  563 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHH--cCCEEEEEeccc
Confidence            45899998  89999999999999  789999999764

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=93.92  E-value=0.075  Score=37.00  Aligned_cols=32  Identities=41%  Similarity=0.491  Sum_probs=26.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+|+|+|+|..|..++..|.+   ..+|++.+..
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~---~~~v~~~~~~   47 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKD---EFDVYIGDVN   47 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT---TSEEEEEESC
T ss_pred             ccEEEEECCCHHHHHHHHHHhc---CCCeEEEEcC
Confidence            3589999999999999998876   4678888754

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=93.87  E-value=0.11  Score=38.25  Aligned_cols=34  Identities=21%  Similarity=0.282  Sum_probs=30.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ....++|+|+|..|..+|..|+.  .|.+|+++|.+
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa--~GA~Viv~D~~  297 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQ--AGARVIVTEID  297 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCC
Confidence            45689999999999999999999  79999999865

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=93.87  E-value=0.074  Score=37.22  Aligned_cols=33  Identities=18%  Similarity=0.289  Sum_probs=29.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ..+|+|||+|..|..+|..|..  .|. +++|+|.+
T Consensus        36 ~~~VlivG~GGlG~~ia~~La~--~Gvg~itlvD~d   69 (346)
T 1y8q_A           36 ASRVLLVGLKGLGAEIAKNLIL--AGVKGLTMLDHE   69 (346)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--HTCSEEEEECCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCCEEEEEECC
Confidence            4689999999999999999999  787 79999875

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=93.86  E-value=0.072  Score=36.55  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=27.4

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCC-------cEEEEccC
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNC-------DVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~-------~v~vie~~   61 (90)
                      .+|+|+|+ |..|..++..|.+  .+.       +|.++|..
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~--~g~~~~~~~~ev~l~D~~   44 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAA--GEMLGKDQPVILQLLEIP   44 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHT--TTTTCTTCCEEEEEECCG
T ss_pred             CEEEEECCCCHHHHHHHHHHHh--CCCCCCCCCCEEEEEeCC
Confidence            47999997 9999999999987  564       79999864

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=93.86  E-value=0.11  Score=35.47  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=29.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+++|+|+|-+|..++..|.+  .|. +|+|+.+.
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~--~G~~~v~v~~R~  159 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLD--QQPASITVTNRT  159 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHT--TCCSEEEEEESS
T ss_pred             cCCEEEEECchHHHHHHHHHHHh--cCCCeEEEEECC
Confidence            34689999999999999999998  785 89999775

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=93.84  E-value=0.08  Score=36.42  Aligned_cols=32  Identities=38%  Similarity=0.540  Sum_probs=27.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      +|.|||+|..|..+|+.+..  .++ ++.++|.+.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~--~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMM--RGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHH--HTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHh--CCCCEEEEEcCCh
Confidence            58999999999999999887  455 699999763

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=93.78  E-value=0.11  Score=35.94  Aligned_cols=34  Identities=15%  Similarity=0.263  Sum_probs=29.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+++|+|+|-+|..++..|.+  .|. +|+|+.+.
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~--~G~~~v~v~nRt  181 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAI--EGIKEIKLFNRK  181 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEECS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--cCCCEEEEEECC
Confidence            34689999999999999999998  787 79998775

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=93.77  E-value=0.049  Score=36.34  Aligned_cols=31  Identities=29%  Similarity=0.480  Sum_probs=28.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|.|||+|..|...|..|.+  .|.+|++++ ++
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~-~~   35 (295)
T 1yb4_A            5 KLGFIGLGIMGSPMAINLAR--AGHQLHVTT-IG   35 (295)
T ss_dssp             EEEECCCSTTHHHHHHHHHH--TTCEEEECC-SS
T ss_pred             EEEEEccCHHHHHHHHHHHh--CCCEEEEEc-CH
Confidence            79999999999999999998  789999998 53

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=93.76  E-value=0.15  Score=35.30  Aligned_cols=35  Identities=29%  Similarity=0.461  Sum_probs=29.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+|+|+|+|..|...+..+.+  .|.+|.+++..+
T Consensus        10 ~~~~ili~g~g~~~~~~~~a~~~--~G~~v~~~~~~~   44 (391)
T 1kjq_A           10 AATRVMLLGSGELGKEVAIECQR--LGVEVIAVDRYA   44 (391)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHT--TTCEEEEEESST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEECCC
Confidence            44689999999999999998888  799999998753

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=93.76  E-value=0.15  Score=34.38  Aligned_cols=34  Identities=21%  Similarity=0.314  Sum_probs=29.4

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+|+|.|+ |..|..++..|.+  .|.+|+++++.
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~--~g~~V~~~~r~   53 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLP--QGHEILVIDNF   53 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGG--GTCEEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            3458999998 9999999999998  78999999875

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=93.72  E-value=0.16  Score=34.11  Aligned_cols=34  Identities=29%  Similarity=0.449  Sum_probs=29.3

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+|+|.|+ |..|..++..|.+  .|.+|+++++..
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~--~G~~V~~~~r~~   39 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLA--HGYDVVIADNLV   39 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHH--TTCEEEEECCCS
T ss_pred             CcEEEEecCCcHHHHHHHHHHHH--CCCcEEEEecCC
Confidence            357999996 8999999999999  799999998753

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=93.72  E-value=0.073  Score=38.86  Aligned_cols=35  Identities=17%  Similarity=0.424  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..++++|||+|..|+.++..+.+  .+.+|+++++.+
T Consensus       185 ~gk~V~VIG~G~sg~e~a~~l~~--~~~~vtv~~r~~  219 (542)
T 1w4x_A          185 SGQRVGVIGTGSSGIQVSPQIAK--QAAELFVFQRTP  219 (542)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHH--HBSEEEEEESSC
T ss_pred             CCCEEEEECCCccHHHHHHHHhh--cCceEEEEEcCC
Confidence            34689999999999999999998  688999999763

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=93.71  E-value=0.18  Score=33.69  Aligned_cols=34  Identities=21%  Similarity=0.225  Sum_probs=29.1

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+|+|.|+ |..|..++..|.+  .|.+|+++++.
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~--~g~~V~~~~r~   44 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLE--HGYKVRGTARS   44 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            3458999998 9999999999998  78899988764

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=93.70  E-value=0.11  Score=35.74  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=28.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+++|.|||+|..|...|..+. .  |.+|+++|.++
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-a--G~~V~v~d~~~   44 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-S--KHEVVLQDVSE   44 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-T--TSEEEEECSCH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-c--CCEEEEEECCH
Confidence            3468999999999999998887 3  88999999753

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=93.63  E-value=0.13  Score=37.86  Aligned_cols=34  Identities=26%  Similarity=0.312  Sum_probs=30.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+++|+|.|..|..+|..++.  .|.+|+++|..
T Consensus       273 ~GktV~IiG~G~IG~~~A~~lka--~Ga~Viv~d~~  306 (494)
T 3ce6_A          273 GGKKVLICGYGDVGKGCAEAMKG--QGARVSVTEID  306 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CcCEEEEEccCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            44689999999999999999988  78899999975

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=93.62  E-value=0.081  Score=36.19  Aligned_cols=34  Identities=21%  Similarity=0.279  Sum_probs=29.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+++|+|+|-+|..+++.|.+  .|. +|+|+.+.
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~--~G~~~v~v~nRt  155 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKD--NFAKDIYVVTRN  155 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHH--TTCSEEEEEESC
T ss_pred             cCCEEEEECCcHHHHHHHHHHHH--cCCCEEEEEeCC
Confidence            34689999999999999999998  787 89999775

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=93.58  E-value=0.14  Score=35.45  Aligned_cols=36  Identities=22%  Similarity=0.260  Sum_probs=31.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ....++.|||.|..|...|..+..  .|.+|+++++..
T Consensus       153 l~g~~vgIIG~G~iG~~iA~~l~~--~G~~V~~~d~~~  188 (330)
T 2gcg_A          153 LTQSTVGIIGLGRIGQAIARRLKP--FGVQRFLYTGRQ  188 (330)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGG--GTCCEEEEESSS
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHH--CCCEEEEECCCC
Confidence            345689999999999999999988  789999999753

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=93.57  E-value=0.098  Score=37.88  Aligned_cols=34  Identities=26%  Similarity=0.358  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+|+|||+|..|..++..|..  .|. +++|+|.+
T Consensus        39 ~~~~VlvvG~GGlGs~va~~La~--aGvg~i~ivD~D   73 (434)
T 1tt5_B           39 DTCKVLVIGAGGLGCELLKNLAL--SGFRQIHVIDMD   73 (434)
T ss_dssp             HTCCEEEECSSTHHHHHHHHHHH--TTCCCEEEEECC
T ss_pred             cCCEEEEECcCHHHHHHHHHHHH--cCCCEEEEEcCC
Confidence            34689999999999999999999  787 79999875

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=93.54  E-value=0.12  Score=37.11  Aligned_cols=36  Identities=17%  Similarity=0.273  Sum_probs=28.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhh------------------CCC-CcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRR------------------FPN-CDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~------------------~~g-~~v~vie~~~   62 (90)
                      ..+++|||+|..|+-+|..|.+.                  ..+ .+|+++++..
T Consensus       147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~  201 (456)
T 1lqt_A          147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG  201 (456)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCC
Confidence            46899999999999999988861                  014 4899999864

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=93.53  E-value=0.14  Score=34.44  Aligned_cols=33  Identities=24%  Similarity=0.427  Sum_probs=28.7

Q ss_pred             CCcEEEEC-CCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILG-AGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG-~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .++++|+| +|.+|..++..|.+  .|.+|+++++.
T Consensus       119 gk~vlVtGaaGGiG~aia~~L~~--~G~~V~i~~R~  152 (287)
T 1lu9_A          119 GKKAVVLAGTGPVGMRSAALLAG--EGAEVVLCGRK  152 (287)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH--CcCEEEEEECC
Confidence            46799999 89999999999999  78889888764

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=93.53  E-value=0.15  Score=34.10  Aligned_cols=33  Identities=21%  Similarity=0.131  Sum_probs=29.2

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|+|.|+ |..|..++..|.+  .|.+|+++++..
T Consensus         4 ~~vlVtGatG~iG~~l~~~L~~--~G~~V~~~~r~~   37 (345)
T 2z1m_A            4 KRALITGIRGQDGAYLAKLLLE--KGYEVYGADRRS   37 (345)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--TTCEEEEECSCC
T ss_pred             CEEEEECCCChHHHHHHHHHHH--CCCEEEEEECCC
Confidence            47999998 9999999999998  789999998764

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=93.53  E-value=0.16  Score=35.25  Aligned_cols=34  Identities=21%  Similarity=0.272  Sum_probs=27.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|..+++.|.......++.++|..
T Consensus        10 ~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~   43 (326)
T 2zqz_A           10 QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            5899999999999999999873222379999864

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=93.49  E-value=0.14  Score=34.78  Aligned_cols=33  Identities=27%  Similarity=0.255  Sum_probs=29.4

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|+|.|+ |..|..++..|.+  .|.+|.++.+..
T Consensus        11 ~~IlVtGatG~iG~~l~~~L~~--~g~~V~~l~R~~   44 (346)
T 3i6i_A           11 GRVLIAGATGFIGQFVATASLD--AHRPTYILARPG   44 (346)
T ss_dssp             CCEEEECTTSHHHHHHHHHHHH--TTCCEEEEECSS
T ss_pred             CeEEEECCCcHHHHHHHHHHHH--CCCCEEEEECCC
Confidence            58999999 9999999999998  789999998864

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=93.46  E-value=0.093  Score=37.92  Aligned_cols=36  Identities=22%  Similarity=0.355  Sum_probs=28.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhC--CCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~--~g~~v~vie~~~   62 (90)
                      ..+++|||+|..|+.+|..|.+..  .+.+|+++++..
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~  217 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK  217 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCc
Confidence            368999999999999999887521  267899998753

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=93.46  E-value=0.2  Score=34.94  Aligned_cols=36  Identities=28%  Similarity=0.445  Sum_probs=31.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ....++.|||.|..|...|..+..  .|.+|+++++..
T Consensus       162 l~g~~vgIIG~G~iG~~vA~~l~~--~G~~V~~~dr~~  197 (333)
T 3ba1_A          162 FSGKRVGIIGLGRIGLAVAERAEA--FDCPISYFSRSK  197 (333)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHT--TTCCEEEECSSC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEECCCc
Confidence            345689999999999999999988  789999999864

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=93.44  E-value=0.11  Score=40.11  Aligned_cols=32  Identities=25%  Similarity=0.485  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|-..|..++.  .|.+|+++|..
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~--aG~~V~l~D~~  348 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFAR--VGISVVAVESD  348 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT--TTCEEEEECSS
T ss_pred             cEEEEEcccHHHHHHHHHHHh--CCCchhcccch
Confidence            589999999999999999998  89999999965

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=93.43  E-value=0.14  Score=36.23  Aligned_cols=34  Identities=15%  Similarity=0.218  Sum_probs=30.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..++++|+|.|..|..+|..|.+  .|.+|++.|.+
T Consensus       172 ~GktV~V~G~G~VG~~~A~~L~~--~GakVvv~D~~  205 (364)
T 1leh_A          172 EGLAVSVQGLGNVAKALCKKLNT--EGAKLVVTDVN  205 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CcCEEEEECchHHHHHHHHHHHH--CCCEEEEEcCC
Confidence            44689999999999999999999  89999998864

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=93.42  E-value=0.18  Score=33.05  Aligned_cols=34  Identities=26%  Similarity=0.235  Sum_probs=28.6

Q ss_pred             CCCcEEEECC-C-HHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGA-G-IIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~-G-~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+.++|.|+ | -.|..+|..|.+  .|.+|++++++
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~--~G~~V~~~~r~   56 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALL--EGADVVISDYH   56 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHH--CCCEEEEecCC
Confidence            4467899998 6 489999999999  89999999765

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=93.42  E-value=0.15  Score=37.04  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=30.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+++|+|.|.+|..+|..++.  .|.+|+++|.+
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra--~Ga~Viv~D~d  252 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKA--MGSIVYVTEID  252 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            45689999999999999999988  78999999965

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=93.41  E-value=0.13  Score=34.31  Aligned_cols=32  Identities=25%  Similarity=0.393  Sum_probs=27.2

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|+|.|+ |..|..++..|.+  .|.+|+++++.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~--~g~~V~~~~r~   35 (315)
T 2ydy_A            3 RRVLVTGATGLLGRAVHKEFQQ--NNWHAVGCGFR   35 (315)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT--TTCEEEEEC--
T ss_pred             CeEEEECCCcHHHHHHHHHHHh--CCCeEEEEccC
Confidence            47999998 9999999999998  78999998864

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=93.39  E-value=0.076  Score=36.60  Aligned_cols=32  Identities=38%  Similarity=0.454  Sum_probs=27.6

Q ss_pred             cEEEECC-CHHHHHHHHHHHhhCCC--CcEEEEccCC
Q psy1704          29 KVAILGA-GIIGLSTALELQRRFPN--CDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~-G~~Gl~~A~~l~~~~~g--~~v~vie~~~   62 (90)
                      +|+|+|+ |..|..++..|.+  .+  .+++++|...
T Consensus         2 KI~IiGa~G~VG~~la~~L~~--~~~~~ev~L~Di~~   36 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKN--SPLVSRLTLYDIAH   36 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHT--CTTCSEEEEEESSS
T ss_pred             EEEEECCCChHHHHHHHHHHh--CCCCcEEEEEeCCc
Confidence            7999998 9999999999988  56  5799998753

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=93.39  E-value=0.17  Score=33.64  Aligned_cols=32  Identities=22%  Similarity=0.385  Sum_probs=28.5

Q ss_pred             cEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|+|.|+ |..|..++..|.+  .|.+|+++++..
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~--~g~~V~~~~r~~   34 (312)
T 3ko8_A            2 RIVVTGGAGFIGSHLVDKLVE--LGYEVVVVDNLS   34 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH--TTCEEEEECCCS
T ss_pred             EEEEECCCChHHHHHHHHHHh--CCCEEEEEeCCC
Confidence            6899999 9999999999999  799999998753

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=93.34  E-value=0.13  Score=37.43  Aligned_cols=32  Identities=31%  Similarity=0.492  Sum_probs=28.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC---cEEEEc
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC---DVTVIA   59 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~---~v~vie   59 (90)
                      ...+++|+|+|-+|..++..|.+  .|.   +|++++
T Consensus       185 ~~~rvlvlGAGgAg~aia~~L~~--~G~~~~~I~vvd  219 (439)
T 2dvm_A          185 SEITLALFGAGAAGFATLRILTE--AGVKPENVRVVE  219 (439)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHH--TTCCGGGEEEEE
T ss_pred             cCCEEEEECccHHHHHHHHHHHH--cCCCcCeEEEEE
Confidence            34689999999999999999998  787   799999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	90
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	3e-15
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	8e-14
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	2e-08
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	2e-07
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	3e-07
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	3e-07
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	5e-07
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	9e-07
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	1e-06
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	1e-06
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	3e-06
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	4e-06
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	5e-06
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	6e-06
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	7e-06
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	8e-06
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	1e-05
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	2e-05
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	3e-05
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	3e-05
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	4e-05
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	7e-05
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	8e-05
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	9e-05
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	1e-04
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	2e-04
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	5e-04
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	5e-04
d1h6da1	221	c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxid	7e-04
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	8e-04
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	8e-04
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	0.001
d1nvmb1	157	c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydroge	0.001
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	0.001
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	0.001
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	0.002
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	0.002
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	0.002
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	0.002
d2jfga1	93	c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-	0.003
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	0.003
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	0.003
d1tlta1	164	c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM	0.003
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	0.003
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	0.004

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 66.2 bits (160), Expect = 3e-15
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMG 83
          M S  +V +LG+G+IGLS+AL L R+     V ++A     D +S   A  +  +     
Sbjct: 3  MHSQKRVVVLGSGVIGLSSALILARK--GYSVHILARDLPEDVSSQTFASPWAGANWTPF 60

Query: 84 PDLE 87
            L 
Sbjct: 61 MTLT 64

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 61.8 bits (149), Expect = 8e-14
 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 4/53 (7%)

Query: 29 KVAILGAGIIGLSTALELQRRFPN----CDVTVIADKFNMDTTSDGAAGLFEP 77
          +V ++GAG+IGLSTAL +  R+ +     DV V AD+F   TT+D AAGL++P
Sbjct: 2  RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQP 54

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 47.4 bits (111), Expect = 2e-08
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77
          M  +++  ++G GIIG + A  L +   N +  +         T+  AAG+   
Sbjct: 1  MKRHYEAVVIGGGIIGSAIAYYLAKE--NKNTALFESGTMGGRTTSAAAGMLGA 52

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 44.7 bits (104), Expect = 2e-07
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          ++ I+GAGI+G + A EL  R  N ++TV+
Sbjct: 3  RIVIIGAGIVGTNLADELVTRGWN-NITVL 31

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 43.9 bits (102), Expect = 3e-07
 Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 26 SNH-KVAILGAGIIGLSTALELQRRFPNCDVTVI--ADKFNMDTTSDGAAGLF 75
          S H  V ++GAG +G++   +L ++       ++   D  + + +  G   + 
Sbjct: 1  STHFDVIVVGAGSMGMAAGYQLAKQ--GVKTLLVDAFDPPHTNGSHHGDTRII 51

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.8 bits (102), Expect = 3e-07
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPS 78
           +VAI+GAG  GL     L +     D  ++  +          AG+ E  
Sbjct: 3  TQVAIIGAGPSGLLLGQLLHKA--GIDNVILERQTPDYVLGRIRAGVLEQG 51

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 43.2 bits (100), Expect = 5e-07
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77
          +  ++A++G  I GL+ AL L+      DV V  ++     +  G   + +P
Sbjct: 3  TTDRIAVVGGSISGLTAALMLRDA--GVDVDVY-ERSPQPLSGFGTGIVVQP 51

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 42.8 bits (99), Expect = 9e-07
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
           VA++G GI GL+ A  L+ R    D  ++
Sbjct: 2  NVAVVGGGISGLAVAHHLRSR--GTDAVLL 29

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 42.4 bits (98), Expect = 1e-06
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 8/41 (19%)

Query: 18 PANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
           +NPK       V I+GAG+ GLS A  L        VTV+
Sbjct: 27 TSNPK------HVVIVGAGMAGLSAAYVLAGA--GHQVTVL 59

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 42.3 bits (98), Expect = 1e-06
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          + +  K+AI+GAG  GL TA  L        VT+ 
Sbjct: 1  LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLF 35

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 40.9 bits (94), Expect = 3e-06
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          KV ++G G  G + A  ++   P+ +VT+I
Sbjct: 4  KVVVVGGGTGGATAAKYIKLADPSIEVTLI 33

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-06
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
            KV I+G+G+ GL+ A +LQ      DVT++
Sbjct: 5  TGKVIIIGSGVSGLAAARQLQSF--GMDVTLL 34

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 40.6 bits (94), Expect = 5e-06
 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          + K+ I+GAG  G     +L  +     V +I
Sbjct: 2  SKKILIVGAGFSGAVIGRQLAEK--GHQVHII 31

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 40.2 bits (92), Expect = 6e-06
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          KV +LG+   G     EL    P+ ++   
Sbjct: 2  KVIVLGSSHGGYEAVEELLNLHPDAEIQWY 31

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 40.2 bits (92), Expect = 7e-06
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          +VA++GAG+ GL+ A +L+      +VTV 
Sbjct: 3  RVAVIGAGVSGLAAAYKLKIH--GLNVTVF 30

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 8e-06
 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
          V ++G GI G++ A  L       +V V+
Sbjct: 2  VVVVGGGISGMAAAKLLHDS--GLNVVVL 28

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 39.6 bits (91), Expect = 1e-05
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 73
             +AI+GAG  GL  A+   +  PN  + +I+  + M + +  A G
Sbjct: 5  QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEG 51

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.1 bits (90), Expect = 2e-05
 Identities = 7/30 (23%), Positives = 14/30 (46%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          ++ ++G+G  G  TA  L +      V + 
Sbjct: 3  QICVVGSGPAGFYTAQHLLKHHSRAHVDIY 32

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.6 bits (88), Expect = 3e-05
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
           + I GAGI GLS AL L +      VT++
Sbjct: 3  DILIAGAGIGGLSCALALHQA-GIGKVTLL 31

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 38.4 bits (87), Expect = 3e-05
 Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          +V ++GAG+ G+S A  L       D+ ++
Sbjct: 2  RVIVVGAGMSGISAAKRLSEA-GITDLLIL 30

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 4e-05
 Identities = 7/35 (20%), Positives = 17/35 (48%)

Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
          S+    ++G G    + A  ++ R P   V ++++
Sbjct: 3  SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSE 37

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (85), Expect = 7e-05
 Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 2/35 (5%)

Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          M   + V +LG G+     +  +        V  +
Sbjct: 3  MDEEYDVIVLGTGLTECILSGIMSVN--GKKVLHM 35

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 37.4 bits (85), Expect = 8e-05
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 30 VAILGAGIIGLSTALELQR---RFPNCDVTVIADKFNMDTTSDGAAGLFEP 77
          V I+GAG  GL  A  L     + P+  V +I DK       +G A   + 
Sbjct: 10 VLIVGAGPAGLMAARVLSEYVRQKPDLKVRII-DK-RSTKVYNGQADGLQC 58

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 36.7 bits (83), Expect = 9e-05
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          + K+A+LGAG   +S A  L  R    D+T+ 
Sbjct: 4  SAKIALLGAGPASISCASFL-ARLGYSDITIF 34

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 36.7 bits (84), Expect = 1e-04
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
             I+G+G+ G   A EL++   N  V VI
Sbjct: 3  DYIIVGSGLFGAVCANELKKL--NKKVLVI 30

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.9 bits (81), Expect = 2e-04
 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          + +++ V +LG GI     +  L        V  I
Sbjct: 2  IDTDYDVIVLGTGITECILSGLLSVD--GKKVLHI 34

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 34.7 bits (78), Expect = 5e-04
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64
          +N  V I+G G+ G+  A  L+      ++ ++ D   +
Sbjct: 2  ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVI 40

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 34.9 bits (79), Expect = 5e-04
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          M    +  I+GAG  GL  A +L +      VTV 
Sbjct: 1  MSQYSENIIIGAGAAGLFCAAQLAKL--GKSVTVF 33

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} Length = 221

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

 Score = 34.3 bits (77), Expect = 7e-04
 Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 11 HSAAQSCPANPKVMGSNHK--VAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
            A +  P   + M  + +   AI+G G   L+  L       +  +  +  
Sbjct: 15 TPAGRPMPYAIRPMPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVS 66

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 34.3 bits (77), Expect = 8e-04
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          KV I+G G  G   A +L +     +VTVI
Sbjct: 2  KVVIVGNGPGGFELAKQLSQT---YEVTVI 28

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 34.3 bits (77), Expect = 8e-04
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 5/35 (14%)

Query: 29 KVAILGAGIIGLSTALELQRR-----FPNCDVTVI 58
           +AI+G+G      A  L +        +  V ++
Sbjct: 4  YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDML 38

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 33.9 bits (76), Expect = 0.001
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64
           V +LGAG+  +S   EL++      +TV+ D+   
Sbjct: 5  PVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER 40

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} Length = 157

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

 Score = 33.5 bits (76), Expect = 0.001
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61
          M    KVAI+G+G IG    +++ R     ++  +   
Sbjct: 1  MNQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGI 38

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 33.9 bits (76), Expect = 0.001
 Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
          V ++G G  GL  A+         +V ++
Sbjct: 5  VIVIGGGPSGLMAAIGAAEE--GANVLLL 31

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.4 bits (75), Expect = 0.001
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
          +   V I+GAG  GLS A  + +  P+  V +I
Sbjct: 49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCII 81

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 33.6 bits (75), Expect = 0.002
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 73
            ++G G+ GL  A+  Q++       V++      + S  A G
Sbjct: 8  SLVIGGGLAGLRAAVATQQK--GLSTIVLSLIPVKRSHSAAAQG 49

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 33.4 bits (75), Expect = 0.002
 Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 2/38 (5%)

Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64
          N ++ I+G+G    + A+   R        +       
Sbjct: 5  NTRLCIVGSGPAAHTAAIYAARA--ELKPLLFEGWMAN 40

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 32.9 bits (74), Expect = 0.002
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 73
               ++GAG  G+  AL++ +        +++  F   + +  A G
Sbjct: 7  EFDAVVIGAGGAGMRAALQISQSGQT--CALLSKVFPTRSHTVSAQG 51

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 33.1 bits (74), Expect = 0.002
 Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
          V ++G+G  G S A+          V +I
Sbjct: 19 VVVVGSGGAGFSAAISATDS--GAKVILI 45

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 93

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 32.0 bits (72), Expect = 0.003
 Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 2/38 (5%)

Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63
              V I+G G+ GLS       R       V+  +  
Sbjct: 4  QGKNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRMT 39

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 32.9 bits (74), Expect = 0.003
 Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
           V ++GAG  GL     L+       V VI
Sbjct: 9  DVLVVGAGFSGLYALYRLREL--GRSVHVI 36

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 32.6 bits (73), Expect = 0.003
 Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
          V ++GAG  G + +L  ++     +V ++
Sbjct: 22 VLVVGAGSAGFNASLAAKKA--GANVILV 48

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} Length = 164

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

 Score = 32.3 bits (72), Expect = 0.003
 Identities = 4/36 (11%), Positives = 11/36 (30%)

Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64
          ++ ++G G I     L +     +  +         
Sbjct: 3  RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRA 38

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 32.6 bits (73), Expect = 0.003
 Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
          V I+G+G  GL+ A+  +       V ++
Sbjct: 26 VVIIGSGGAGLAAAVSARDA--GAKVILL 52

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 32.4 bits (72), Expect = 0.004
 Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62
          V I+G+G  G + A+   R+       ++ ++F
Sbjct: 4  VLIVGSGPAGAAAAIYSARK--GIRTGLMGERF 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	90
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	99.32
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.3
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.2
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.18
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.09
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.08
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.07
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.07
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.05
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.0
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.0
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.99
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.98
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.97
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.95
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.95
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.94
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.93
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.92
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.91
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.9
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.89
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.87
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.87
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.85
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.83
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.82
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.82
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.79
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.78
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.78
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.78
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.74
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.74
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.72
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.72
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.72
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.71
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.71
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.7
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.7
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.68
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.67
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.64
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.63
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.61
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.61
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.6
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.55
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.55
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.53
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.52
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.42
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.41
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.41
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.37
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.35
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.32
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.3
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.27
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.2
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.14
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.12
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.11
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.09
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.07
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.06
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.04
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.04
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.03
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.03
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.02
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.99
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.96
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.96
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.91
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.89
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.88
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.84
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.81
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.8
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.78
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.77
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.77
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.76
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.72
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.71
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.56
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.52
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.43
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.38
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.36
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.31
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.29
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.24
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.22
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.16
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.15
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.11
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.1
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.07
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.06
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.99
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.96
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.93
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.87
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.84
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	96.7
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.5
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.42
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.41
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.41
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.39
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.38
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.38
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.36
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.35
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.35
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.31
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.29
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.23
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.2
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.09
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.99
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.93
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.92
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	95.9
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.89
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.88
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	95.83
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.81
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	95.7
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.66
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	95.65
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.63
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	95.56
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	95.49
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	95.47
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.39
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	95.39
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.39
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	95.38
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.36
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.31
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.23
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.21
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.15
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.03
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	94.91
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.86
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	94.68
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.65
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.62
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	94.62
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.57
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.55
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	94.38
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	94.26
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	94.2
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.11
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	94.07
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	94.04
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	94.04
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	94.04
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.95
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	93.95
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	93.9
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.88
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.82
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	93.8
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.47
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.43
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	93.29
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	93.27
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	93.22
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	92.99
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.77
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	92.74
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	92.72
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	92.37
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	92.26
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	91.87
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	91.85
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	91.79
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	91.7
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	91.22
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.03
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	91.03
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	90.74
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	90.7
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	90.58
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	90.24
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	90.21
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	90.15
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	90.14
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	90.09
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	89.92
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	89.64
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	89.55
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	89.51
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	89.46
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	89.43
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	89.1
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	89.08
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	88.91
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.9
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	88.8
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	88.8
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	88.7
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	88.68
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	88.65
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	88.64
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	88.51
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	88.42
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	88.11
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	88.01
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.98
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	87.94
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	87.63
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	87.57
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	87.49
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	87.41
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	87.32
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	87.32
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	87.29
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	87.28
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	87.27
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.18
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	87.14
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	87.0
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	86.91
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	86.9
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	86.86
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	86.65
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	86.58
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	86.53
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	86.52
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	86.3
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	86.15
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	85.79
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	85.72
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	85.65
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	85.65
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	85.56
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	85.5
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	85.49
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	85.45
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	85.43
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	85.4
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	85.14
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	84.93
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	84.87
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	84.79
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	84.67
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	84.63
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	84.48
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	84.48
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	84.46
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	84.31
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	83.54
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	83.45
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	83.45
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	83.42
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	83.39
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	83.37
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	83.1
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	83.08
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	83.07
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	82.97
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	82.97
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	82.95
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	82.83
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	82.72
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	82.67
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	82.65
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	82.52
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	82.34
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	82.26
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	82.22
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	82.21
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	82.19
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	82.18
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	82.06
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	81.93
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	81.81
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	81.78
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	81.61
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	81.35
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	81.15
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	81.02
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	81.02
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	80.77
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	80.65
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	80.47
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	80.09
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	80.02

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=99.32  E-value=2.6e-12  Score=82.55  Aligned_cols=53  Identities=36%  Similarity=0.552  Sum_probs=44.7

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeecC
Q psy1704          24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPS   78 (90)
Q Consensus        24 ~~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~~   78 (90)
                      +...+||+|||+|++||++|+.|++  .|.+|+|+|++..+..+|..+++.+.+.
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~--~G~~V~vier~~~~~~~s~~~~~~~~~~   55 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILAR--KGYSVHILARDLPEDVSSQTFASPWAGA   55 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSCTTCTTCTTSSGGGCCC
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHH--CCCCEEEEeCCCCCCCcchhhhhhhccc
Confidence            3455799999999999999999999  8999999999876677777777776653

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.30  E-value=9.2e-13  Score=86.51  Aligned_cols=53  Identities=23%  Similarity=0.367  Sum_probs=46.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeecCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPN   80 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~~~~   80 (90)
                      .++||+|||+|++|+++|+.|++  .|.+|+|+|++....++|+.++|++.+...
T Consensus         3 ~~~DvvIIGaGi~Gls~A~~La~--~G~~V~vlE~~~~~~gaS~~~~G~l~~~~~   55 (276)
T d1ryia1           3 RHYEAVVIGGGIIGSAIAYYLAK--ENKNTALFESGTMGGRTTSAAAGMLGAHAE   55 (276)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSTTTTHHHHCCCBCCGGGS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCcccccccccccccc
Confidence            45799999999999999999999  899999999987777888889998877543

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.20  E-value=1.3e-11  Score=77.17  Aligned_cols=41  Identities=20%  Similarity=0.172  Sum_probs=36.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        24 ~~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      |...+||+|||+|++|+++|+.|++  .|.+|+|+|+++..++
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~--~G~~V~vlE~~~~~GG   42 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSV--DGKKVLHIDKQDHYGG   42 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCG
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHH--CCCCEEEEcCCCCCCc
Confidence            3456899999999999999999999  8999999999876544

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=7.6e-11  Score=76.02  Aligned_cols=39  Identities=33%  Similarity=0.495  Sum_probs=34.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ...||+|||+|++||++|+.|++  .|.+|+|+|++...++
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~--~G~~V~VlEa~~r~GG   42 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARDRVGG   42 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHH--TTCEEEEECSSSSSBT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCCcc
Confidence            34689999999999999999999  8999999999876644

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.08  E-value=1e-10  Score=78.03  Aligned_cols=50  Identities=22%  Similarity=0.317  Sum_probs=42.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ..+||+|||+|++|+++|+.|++  .|.+|+|+||.+..+++|..++|.+..
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~--~G~~V~lvEK~~~~gG~s~~s~G~~~~   64 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATD--SGAKVILIEKEPVIGGNAKLAAGGMNA   64 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTTGGGCCSCEEC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCcceecCCCCcc
Confidence            35799999999999999999999  899999999998777777666665543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.07  E-value=9.7e-11  Score=73.12  Aligned_cols=37  Identities=24%  Similarity=0.466  Sum_probs=32.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCCCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNMDT   66 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~~~~~   66 (90)
                      +||+|||||++||++|+.|++  .|. +|+|+|++..+++
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~--~G~~~V~vlE~~~~~GG   38 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSE--AGITDLLILEATDHIGG   38 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHH--TTCCCEEEECSSSSSBT
T ss_pred             CCEEEECCcHHHHHHHHHHHh--CCCCcEEEEECCCCCCc
Confidence            389999999999999999999  896 6999999865543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.07  E-value=2.4e-10  Score=75.08  Aligned_cols=50  Identities=14%  Similarity=0.330  Sum_probs=39.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC--CCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD--TTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~--~~s~~~~g~~~~   77 (90)
                      +++||+|||+|++|+++|+.|++  .|.+|+|+|+...+.  +++...++++..
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~--~G~~V~viE~~~~~~~~~s~~~~~~~~~~   53 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAK--QGVKTLLVDAFDPPHTNGSHHGDTRIIRH   53 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCSSCSSSSSCSSEEEECS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCcccccCCCcceeec
Confidence            46899999999999999999999  899999999976543  333334444433

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.05  E-value=1.3e-10  Score=74.38  Aligned_cols=37  Identities=32%  Similarity=0.505  Sum_probs=33.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ++|+|||+|++||++|+.|++  .|.+|+|+|++...++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~--~G~~V~vlE~~~~~GG   38 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEGKAGG   38 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT--TSCEEEEECSSSSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CCCCEEEEeCCCCCcC
Confidence            589999999999999999999  8999999999866544

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.00  E-value=2.1e-10  Score=74.93  Aligned_cols=39  Identities=33%  Similarity=0.426  Sum_probs=34.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ..++|+|||+|++||++|+.|++  .|.+|+|||++...++
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~--~G~~V~vlE~~~~~GG   67 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAG--AGHQVTVLEASERPGG   67 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHH--HTCEEEEECSSSSSBT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCCCC
Confidence            34699999999999999999999  7999999999866544

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.00  E-value=2.4e-10  Score=73.29  Aligned_cols=36  Identities=28%  Similarity=0.502  Sum_probs=32.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ||+|||+|++||++|+.|++  .|.+|+|+|++...++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~--~G~~V~vlE~~~~~GG   37 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRS--RGTDAVLLESSARLGG   37 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHT--TTCCEEEECSSSSSBT
T ss_pred             eEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCCc
Confidence            79999999999999999999  8999999999866543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.99  E-value=1.1e-10  Score=75.52  Aligned_cols=38  Identities=18%  Similarity=0.336  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      +++||+|||+|++|+.+|+.|++  .|.+|+|+|++..++
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~--~G~~V~liEk~~~~g   38 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAE--EGANVLLLDKGNKLG   38 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCC
Confidence            35899999999999999999999  899999999986554

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.98  E-value=1.6e-10  Score=77.59  Aligned_cols=48  Identities=21%  Similarity=0.268  Sum_probs=40.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE   76 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~   76 (90)
                      .+||+|||+|++||++|+.+++  .|.+|+|+||....+++|..++|.++
T Consensus         5 ~~DVvVIG~G~AGl~AAl~aa~--~G~~V~liEK~~~~~g~S~~a~GGi~   52 (336)
T d2bs2a2           5 YCDSLVIGGGLAGLRAAVATQQ--KGLSTIVLSLIPVKRSHSAAAQGGMQ   52 (336)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCGGGSGGGGCCSCEE
T ss_pred             ecCEEEECcCHHHHHHHHHHHH--CCCCEEEEecCCCCCCchhhccchHh
Confidence            4799999999999999999999  89999999998766666666554443

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.97  E-value=7.5e-10  Score=73.40  Aligned_cols=48  Identities=29%  Similarity=0.395  Sum_probs=40.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCCC--CCCCccCcCeeeec
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFN--MDTTSDGAAGLFEP   77 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~~--~~~~s~~~~g~~~~   77 (90)
                      .||+|||+|++|+++|+.|++  .|. +|+|+|++..  +.++|+.++|++..
T Consensus         2 ~dViIIGaGi~G~s~A~~La~--~G~~~V~liE~~~~~~~~gas~~~~G~i~~   52 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVT--RGWNNITVLDQGPLNMPGGSTSHAPGLVFQ   52 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSCTTCCCSGGGTCCCEECC
T ss_pred             CCEEEECcCHHHHHHHHHHHH--cCCCcEEEEeCCCCCCCccccccccceecc
Confidence            389999999999999999998  785 7999999853  35577788888776

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=4.5e-10  Score=73.95  Aligned_cols=36  Identities=25%  Similarity=0.447  Sum_probs=32.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ||+|||+|++||++|+.|++  .|.+|+|+|++...++
T Consensus         1 DViVIGaG~aGL~aA~~L~~--~G~~V~VlE~~~~~GG   36 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHD--SGLNVVVLEARDRVGG   36 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHH--TTCCEEEEESSSSSBT
T ss_pred             CEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCcc
Confidence            79999999999999999999  8999999999765543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.95  E-value=4e-10  Score=75.92  Aligned_cols=50  Identities=20%  Similarity=0.305  Sum_probs=42.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ...||+|||+|++|+++|+.+++  .|.+|+|+||.+..++.|..++|.++.
T Consensus        18 e~~DVvVIGaG~aGl~AA~~aa~--~G~~V~vlEK~~~~gG~S~~a~Ggi~a   67 (317)
T d1qo8a2          18 ETTQVLVVGAGSAGFNASLAAKK--AGANVILVDKAPFSGGNSMISAGGMNA   67 (317)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH--HTCCEEEECSSSSSCTTGGGCCSCEEC
T ss_pred             CccCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCchhhcCCCccc
Confidence            34799999999999999999999  799999999998777777777666654

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.94  E-value=1.2e-09  Score=75.84  Aligned_cols=51  Identities=24%  Similarity=0.368  Sum_probs=39.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhh----CCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRR----FPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~----~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      +.+||+|||||++|+++|+.|++.    ..|++|+|+||...++.- ...++++.+
T Consensus        31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k-~~~Ggvl~~   85 (380)
T d2gmha1          31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH-TLSGACLDP   85 (380)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT-CCCCCEECT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCC-ccccccccH
Confidence            458999999999999999999851    269999999998776543 234555554

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.93  E-value=8.3e-10  Score=74.17  Aligned_cols=48  Identities=23%  Similarity=0.315  Sum_probs=40.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE   76 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~   76 (90)
                      ..||+|||+|++|+++|+.|++  .|.+|+|+||.+..++.|..++|.+.
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~--~G~~V~llEk~~~~gG~s~~s~Ggi~   70 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARD--AGAKVILLEKEPIPGGNTKLAAGGMN   70 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHT--TTCCEEEECSSSSSCTTGGGCCSCEE
T ss_pred             cceEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCcccccCCccc
Confidence            4699999999999999999999  89999999998777766665555443

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.92  E-value=1.5e-10  Score=75.71  Aligned_cols=37  Identities=30%  Similarity=0.372  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD   65 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~   65 (90)
                      ..||+|||+|++|+.+|+.|++  .|.+|+|+|+.+.++
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~--~G~~V~vlEk~~~~G   40 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAK--LGKSVTVFDNGKKIG   40 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSC
T ss_pred             CCcEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCC
Confidence            4699999999999999999999  899999999986553

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=2.7e-10  Score=76.96  Aligned_cols=57  Identities=25%  Similarity=0.352  Sum_probs=43.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeecCCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMG   83 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~~~~~~~   83 (90)
                      ..||+|||+|++||++|+.+.+..++.+|+|+||....++.|..++|.++......+
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s~~A~GGi~a~~~~~D   61 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHD   61 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTC
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcHHHHhhhHhhhcCCCC
Confidence            479999999999999999999855688999999986665556655555554333333

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=2.5e-09  Score=67.98  Aligned_cols=38  Identities=24%  Similarity=0.373  Sum_probs=33.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...++|+|||+|++||.+|+.|++  .|++|+|||+....
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~--~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAA--RGHQVTLFDAHSEI   78 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHh--hccceEEEeccCcc
Confidence            345799999999999999999999  89999999997544

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.89  E-value=1.6e-09  Score=69.95  Aligned_cols=37  Identities=30%  Similarity=0.481  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...+|+|||+|++|+++|..|++  .|++|+|||++..+
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~--~G~~v~v~Er~~~~   39 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRD--AGVDVDVYERSPQP   39 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCC
Confidence            34689999999999999999999  89999999997543

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=9.9e-10  Score=73.38  Aligned_cols=49  Identities=29%  Similarity=0.342  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ..+||+|||+|++||++|+.+++  .+ +|+|+||.+..+++|..++|.++.
T Consensus         6 ~~~DVvVVG~G~AGl~AA~~a~~--~g-~V~llEK~~~~gG~s~~a~Ggi~a   54 (305)
T d1chua2           6 HSCDVLIIGSGAAGLSLALRLAD--QH-QVIVLSKGPVTEGSTFYAQGGIAA   54 (305)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT--TS-CEEEECSSCTTC------------
T ss_pred             ccCCEEEECccHHHHHHHHHhhc--CC-CEEEEECCCCCCCchHHhCcceEE
Confidence            45899999999999999999987  66 999999988777777766665544

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=6.9e-10  Score=75.16  Aligned_cols=50  Identities=18%  Similarity=0.350  Sum_probs=41.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      .++||+|||+|++||.+|+.+.+  .|.+|+|+||.+..++.|..++|.++.
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~--~G~~V~lleK~~~~gg~s~~A~GGi~a   55 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQ--SGQTCALLSKVFPTRSHTVSAQGGITV   55 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHH--TTCCCEEECSSCGGGSGGGGCCSCEEC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHH--cCCeEEEEeCCCCCCCcHHHHhhhHhe
Confidence            45799999999999999999999  899999999987666666666555554

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.85  E-value=1.6e-09  Score=71.63  Aligned_cols=42  Identities=31%  Similarity=0.564  Sum_probs=35.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCc
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTS   68 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s   68 (90)
                      .++||+|||+|++||.+|+.|+++ .|++|+|+|+.+.+++..
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~-~G~~V~vlE~~~~~GG~~   73 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKN-PNVQVAIIEQSVSPGGGA   73 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTS-TTSCEEEEESSSSCCTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHc-cCCeEEEEecCCCCCCce
Confidence            457999999999999999999762 499999999987665433

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.83  E-value=5.9e-10  Score=73.40  Aligned_cols=34  Identities=29%  Similarity=0.432  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +.+|+|||||++||++|..|++  .|++|+|+|+.+
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~--~G~~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHH--HTCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence            4589999999999999999999  899999999974

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.82  E-value=2.7e-09  Score=67.49  Aligned_cols=37  Identities=19%  Similarity=0.252  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      .++|++|||+|++|+.+|.++++  .|++|+|+|+...+
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar--~G~~V~viE~~~~~   38 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQ--LGLKTALIEKYKGK   38 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH--HTCCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH--CCCeEEEEecccCC
Confidence            35899999999999999999999  79999999987543

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=1.7e-09  Score=72.58  Aligned_cols=37  Identities=30%  Similarity=0.424  Sum_probs=33.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      +|++|||||++|+++|+.|++  .|.+|+|+|++...++
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~--~g~~V~iiEk~~~iGG   38 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKK--LNKKVLVIEKRNHIGG   38 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGG--GTCCEEEECSSSSSSG
T ss_pred             ccEEEECCcHHHHHHHHHHHh--CCCcEEEEECCCCccc
Confidence            589999999999999999998  7999999999765543

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.79  E-value=3.2e-09  Score=71.91  Aligned_cols=38  Identities=24%  Similarity=0.407  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      .++|+|||||++||++|+.|++  .|.+|+|+|++...++
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k--~G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAE--KGHQVHIIDQRDHIGG   39 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSSG
T ss_pred             CCEEEEECCcHHHHHHHHHHHh--CCCCEEEEECCCCCcC
Confidence            3689999999999999999999  8999999999866544

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.78  E-value=4.9e-09  Score=65.23  Aligned_cols=35  Identities=34%  Similarity=0.442  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~~   63 (90)
                      .++|+|||||++||.+|..|++  .|. +|+|||+...
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~--~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLAR--LGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHH--TTCCCEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHHHH--CCCCeEEEEEecCc
Confidence            4689999999999999999999  888 5999999743

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.78  E-value=5.1e-09  Score=67.11  Aligned_cols=37  Identities=19%  Similarity=0.385  Sum_probs=31.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ++|+|||+|++||++|..|++...+.+|+|||+.+.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            4899999999999999999874457899999997554

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.78  E-value=5.7e-09  Score=67.26  Aligned_cols=35  Identities=37%  Similarity=0.527  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM   64 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~~~   64 (90)
                      .||+|||||++||++|+.|++  .|. +|+|+|+.+.+
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~--~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQ--AGIGKVTLLESSSEI   37 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESSSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CCCCeEEEEeCCCCC
Confidence            589999999999999999999  896 89999997654

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.74  E-value=6.7e-09  Score=66.00  Aligned_cols=50  Identities=48%  Similarity=0.711  Sum_probs=40.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCc------EEEEccCCCCCCCccCcCeeeecCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCD------VTVIADKFNMDTTSDGAAGLFEPSPN   80 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~------v~vie~~~~~~~~s~~~~g~~~~~~~   80 (90)
                      +|+|||+|++||++|+.|++  .|.+      ++++++...+..++..++|++.|...
T Consensus         2 kV~VIGaGi~GlstA~~L~~--~G~~v~v~e~~~i~~~~~~~~~ts~~a~g~~~p~~~   57 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHE--RYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTS   57 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--HHTTTSSSCEEEEEESCCTTSSSGGGSCCBCCCCSS
T ss_pred             EEEEECchHHHHHHHHHHHH--CCCCceEEeeeeecccCCCCCChhHhhhceeccccc
Confidence            79999999999999999998  5654      55555566677888999999988433

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=2.5e-09  Score=68.16  Aligned_cols=35  Identities=20%  Similarity=0.401  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .++|++|||+|++|+.+|.++++  .|.+|+|+|+..
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~--~G~kV~lie~~~   38 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQ--LGFNTACVEKRG   38 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSS
T ss_pred             cccCEEEECCCHHHHHHHHHHHH--CCCcEEEEEecC
Confidence            45899999999999999999999  899999999864

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.72  E-value=8.6e-09  Score=69.54  Aligned_cols=37  Identities=27%  Similarity=0.371  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...||+|||||++||++|..|++  .|.+|+|||+....
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~--~G~~v~i~Ek~~~i   42 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRE--LGRSVHVIETAGDV   42 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHh--CCCCEEEEEcCCCc
Confidence            45799999999999999999999  89999999997543

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.72  E-value=1.5e-08  Score=68.11  Aligned_cols=49  Identities=16%  Similarity=0.207  Sum_probs=38.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHh--hCCCCcEEEEccCCCCCCCccCcCee
Q psy1704          26 SNHKVAILGAGIIGLSTALELQR--RFPNCDVTVIADKFNMDTTSDGAAGL   74 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~--~~~g~~v~vie~~~~~~~~s~~~~g~   74 (90)
                      ...||+|||+|++||++|+.+++  +.+|.+|+|+||....++.+...++.
T Consensus        20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s~~~g~~   70 (356)
T d1jnra2          20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLS   70 (356)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTTTTCEE
T ss_pred             EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChhHHHHHH
Confidence            45799999999999999998864  12689999999987666555444443

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.72  E-value=3.2e-09  Score=67.72  Aligned_cols=37  Identities=19%  Similarity=0.131  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhh-----CCCCcEEEEccCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRR-----FPNCDVTVIADKFNM   64 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~-----~~g~~v~vie~~~~~   64 (90)
                      .+|+|||+|++||++|+.|.+.     ..+.+|+|||+.+.+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~   44 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   44 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCC
Confidence            5899999999999999999883     123689999997544

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.71  E-value=8.8e-09  Score=69.45  Aligned_cols=38  Identities=34%  Similarity=0.309  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      .++|+|||||++||++|..|+++..+.+|+|+||+...
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~i   41 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSP   41 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            36899999999999999999873233599999998544

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.71  E-value=9.2e-09  Score=65.14  Aligned_cols=36  Identities=22%  Similarity=0.323  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+|++|||+|++|+.+|..+++  .|.+|+|+|+...
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~--~G~kV~vie~~~~   37 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQ--LGFKTTCIEKRGA   37 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCC
Confidence            35899999999999999999999  7999999998643

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.70  E-value=1.1e-08  Score=68.12  Aligned_cols=39  Identities=31%  Similarity=0.352  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhh---CCCCcEEEEccCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRR---FPNCDVTVIADKFNMD   65 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~---~~g~~v~vie~~~~~~   65 (90)
                      .+||+|||||++|+++|..|++.   ..|++|+|||+.+.+.
T Consensus         7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            47999999999999999999631   1699999999986553

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=1.2e-08  Score=65.25  Aligned_cols=36  Identities=25%  Similarity=0.281  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      .+|++|||+|++|+++|.++++  .|.+|+|+|+.+.+
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~--~G~kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAK--FDKKVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGG--GCCCEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCC
Confidence            5799999999999999999999  89999999987543

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.68  E-value=8.8e-09  Score=66.12  Aligned_cols=35  Identities=23%  Similarity=0.310  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+|++|||+|++||++|.++++  .|.+|+|||+...
T Consensus         6 dyDviIIG~GPaGlsaA~~aa~--~G~~V~viE~~~~   40 (229)
T d1ojta1           6 EYDVVVLGGGPGGYSAAFAAAD--EGLKVAIVERYKT   40 (229)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSC
T ss_pred             ccCEEEECcCHHHHHHHHHHHH--CCCeEEEEeccCC
Confidence            4799999999999999999999  8999999998653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.67  E-value=2.8e-08  Score=64.12  Aligned_cols=38  Identities=24%  Similarity=0.270  Sum_probs=33.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...++|+|||+|++|+.+|..|++  .|.+|+|+|+....
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~--~G~~v~l~E~~~~~   84 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLME--SGYTVHLTDTAEKI   84 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSST
T ss_pred             cCCceEEEEcccHHHHHHHHHHHH--hccceeeEeecccc
Confidence            345799999999999999999999  89999999987543

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.64  E-value=1.4e-08  Score=68.02  Aligned_cols=35  Identities=29%  Similarity=0.292  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .++|++|||+|++|+.+|.+|++  +|++|+|+|+..
T Consensus         3 ~~yDviIVGsG~aG~v~A~~La~--~G~kVlvLEaG~   37 (379)
T d2f5va1           3 IKYDVVIVGSGPIGCTYARELVG--AGYKVAMFDIGE   37 (379)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSC
T ss_pred             CcccEEEECcCHHHHHHHHHHhh--CCCeEEEEecCC
Confidence            45799999999999999999999  899999999863

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=1.4e-08  Score=64.36  Aligned_cols=34  Identities=15%  Similarity=0.132  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ++|++|||+|++|+.+|..+++  .|.+|+|+|++.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~--~G~kV~iiE~~~   35 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAM--YGQKCALIEAKE   35 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT--TTCCEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCEEEEEeccC
Confidence            4799999999999999999999  899999999863

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=3.9e-08  Score=65.81  Aligned_cols=40  Identities=30%  Similarity=0.423  Sum_probs=34.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT   66 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~   66 (90)
                      ..||+|||+|++|+++|+.|+++.+|.+|+|+|+...+++
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~   89 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG   89 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcc
Confidence            4699999999999999999997546999999999866544

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=2.1e-08  Score=61.91  Aligned_cols=32  Identities=22%  Similarity=0.384  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +||+|||||++|+.+|.++.+  .|.+|+|+|++
T Consensus         2 yDViIIGgGpaGl~AAi~aar--~G~~v~iie~~   33 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSAR--KGIRTGLMGER   33 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT--TTCCEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHH--cCCeEEEEEEe
Confidence            699999999999999999999  89999999975

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.60  E-value=2.4e-08  Score=63.01  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ++|++|||+|++|+.+|.++++  .|.+|+|+|+..
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar--~G~kV~vIEk~~   36 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQ--LGQKVTIVEKGN   36 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCEEEEEecCC
Confidence            4799999999999999999999  899999999864

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=3.4e-08  Score=62.54  Aligned_cols=34  Identities=18%  Similarity=0.259  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ++|++|||+|++|+.+|.++++  .|.+|+|+|+..
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar--~G~kV~vIEk~~   36 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAE--LGARAAVVESHK   36 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred             ccCEEEECCCHHHHHHHHHHHH--CCCEEEEEeccC
Confidence            5799999999999999999999  899999999864

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.55  E-value=2.8e-08  Score=63.26  Aligned_cols=35  Identities=14%  Similarity=0.233  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .++|++|||+|++|+.+|..+++  .|.+|+|+|++.
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~--~G~~V~liE~~~   38 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQ--LGIPTVLVEGQA   38 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH--HTCCEEEECSSC
T ss_pred             cccCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCC
Confidence            45799999999999999999999  799999999863

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=3.2e-08  Score=61.85  Aligned_cols=34  Identities=29%  Similarity=0.394  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..||+|||+|++|+.+|+++++  .+.+|+|+|+..
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar--~g~~v~iie~~~   38 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT--TTCCCEEECCSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHH--cCCceEEEEeec
Confidence            4699999999999999999999  899999999864

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.52  E-value=2.3e-08  Score=62.84  Aligned_cols=36  Identities=17%  Similarity=0.273  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .++||+|||||++|+.+|+++++  .|.+++|+|+...
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar--~g~~v~vie~~~~   39 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAAR--AELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSB
T ss_pred             ccceEEEECCCHHHHHHHHHHHH--cCCcEEEEEeecc
Confidence            35799999999999999999999  8999999998643

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.42  E-value=1.1e-07  Score=64.39  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.|++|||+|++|+.+|.+|++  .|++|+|+|+.
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLae--aG~~VlvLEaG   39 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQ--AGIPTQIVEMG   39 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCC
Confidence            45799999999999999999999  89999999985

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.41  E-value=2.1e-07  Score=56.33  Aligned_cols=35  Identities=29%  Similarity=0.407  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ++|+|||+|++|+.+|..|++..+..+|+++|+++
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            58999999999999999999865667999999875

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.41  E-value=1.5e-07  Score=61.36  Aligned_cols=33  Identities=21%  Similarity=0.381  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|++|||+|++|+.+|.++++  .|.+|+|+|+..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~--~G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAAR--HNAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence            699999999999999999999  899999999864

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.37  E-value=2e-07  Score=62.89  Aligned_cols=32  Identities=16%  Similarity=0.238  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .||+|||+|++|+.+|++|.+  .|++|+|+|+.
T Consensus         3 v~VIVVGsG~aG~v~A~rLae--aG~~VlvLEaG   34 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGE--AGVQTLMLEMG   34 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             CeEEEeCcCHHHHHHHHHHHH--CcCeEEEEecC
Confidence            489999999999999999999  89999999985

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.35  E-value=3e-07  Score=60.28  Aligned_cols=33  Identities=30%  Similarity=0.439  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+||+|||+|++|+.+|+++++  .|.++.+|+++
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR--~G~ktllit~~   34 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQ--KGVRVGLLTQS   34 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESC
T ss_pred             CCcEEEECcCHHHHHHHHHHHH--CCCcEEEEEec
Confidence            4799999999999999999999  89999999975

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.32  E-value=3.2e-07  Score=62.58  Aligned_cols=34  Identities=24%  Similarity=0.197  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|++|||+|.+|+.+|.+|++  .+.+|+|+|+..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae--~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSE--AGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhh--CCCeEEEEEccC
Confidence            5799999999999999999999  899999999873

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.30  E-value=5e-07  Score=57.16  Aligned_cols=34  Identities=26%  Similarity=0.297  Sum_probs=29.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ..+|++|||+|++|+.+|.++++  .+. .|+|+|+.
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~--~g~k~V~iie~~   36 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAAT--LYKKRVAVIDVQ   36 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHH--TSCCCEEEEESC
T ss_pred             CccCEEEECCCHHHHHHHHHHHH--cCCCEEEEEEee
Confidence            35899999999999999999998  665 68888875

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.27  E-value=7.8e-07  Score=57.93  Aligned_cols=37  Identities=11%  Similarity=0.032  Sum_probs=33.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ...+|++|||+|++|+.+|..+++  .|.+|+++|+...
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~--~G~kv~vve~~~~   76 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRA--MGGRQLIVDRWPF   76 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCc
Confidence            346899999999999999999999  8999999998654

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.20  E-value=7.3e-07  Score=57.05  Aligned_cols=36  Identities=22%  Similarity=0.258  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~~   63 (90)
                      ..+|++|||+|++|+.+|.++++  .+. +|+|+|+...
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~--~g~k~V~vie~~~~   38 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAAS--LHKKRVAVIDLQKH   38 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH--HHCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHH--cCCCEEEEEEEecc
Confidence            45799999999999999999988  565 6999998643

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.14  E-value=2e-06  Score=50.06  Aligned_cols=35  Identities=17%  Similarity=0.344  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      +.+++|||+|+.|+.+|..+.+  .|.+|+++|+.+.
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~--~G~~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYAN--FGTKVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSS
T ss_pred             CCeEEEECCCccceeeeeeecc--cccEEEEEEecce
Confidence            3689999999999999999999  8999999998754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.12  E-value=3.1e-06  Score=49.91  Aligned_cols=36  Identities=22%  Similarity=0.490  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ..+++|||+|+.|+.+|..|++  .|.+|+++|+.+.+
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATART--AGVHVSLVETQPRL   65 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSST
T ss_pred             CCeEEEECcchhHHHHHHHhhc--ccceEEEEeecccc
Confidence            4689999999999999999999  89999999987654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=2.8e-06  Score=49.61  Aligned_cols=35  Identities=20%  Similarity=0.252  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|+.|+.+|..+++  .|.+|+++|+.+.
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~--~G~~Vtlve~~~~   55 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVING--LGAKTHLFEMFDA   55 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhc--cccEEEEEeecch
Confidence            3589999999999999999999  8999999998753

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.09  E-value=1.5e-06  Score=59.84  Aligned_cols=34  Identities=32%  Similarity=0.472  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~   62 (90)
                      .+|++|||+|.+|+.+|.+|++  .+ .+|+|+|+..
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae--~~~~~VLlLEaG~   58 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTE--NPKIKVLVIEKGF   58 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT--STTCCEEEEESSC
T ss_pred             eeeEEEECcCHHHHHHHHHHHH--CCCCeEEEEcCCC
Confidence            4899999999999999999998  55 7999999975

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.07  E-value=3.9e-06  Score=49.46  Aligned_cols=36  Identities=28%  Similarity=0.372  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ..+++|||+|+.|+.+|..|.+  .|.+|+++|+.+.+
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~--~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAK--AGKKVTVIDILDRP   65 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSST
T ss_pred             CCEEEEECChHHHHHHHHHhhc--cceEEEEEEecCcc
Confidence            4589999999999999999999  89999999987543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.06  E-value=4.5e-06  Score=49.86  Aligned_cols=36  Identities=25%  Similarity=0.514  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ..+++|||+|++|+.+|..|++  .|.+|+++|+.+.+
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~--~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIK--ANMHVTLLDTAARV   70 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSST
T ss_pred             CCEEEEECCchHHHHHHHHHHh--hCcceeeeeecccc
Confidence            4689999999999999999999  89999999987544

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.04  E-value=3.8e-06  Score=52.34  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      +|+|||+|++|+.+|..|++..++.+|+++|++..
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~   36 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF   36 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCc
Confidence            79999999999999999998666788999998643

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.04  E-value=2e-06  Score=58.87  Aligned_cols=35  Identities=37%  Similarity=0.511  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|++|||+|.+|+.+|.+|.+. ++.+|+|+|+..
T Consensus        17 tyD~IIVGsG~aG~vlA~rLse~-~~~~VLvLEaG~   51 (385)
T d1cf3a1          17 TVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESGS   51 (385)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTS-TTCCEEEEESSC
T ss_pred             eEEEEEECcCHHHHHHHHHHHHC-CCCeEEEECCCC
Confidence            47999999999999999999872 347999999874

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.03  E-value=4.7e-06  Score=48.82  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||||+.|+.+|..|++  .|.+|+++|+...
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~--~g~~Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKR--LGIDSYIFARGNR   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHT--TTCEEEEECSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHh--ccccceeeehhcc
Confidence            3689999999999999999998  8999999998654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.03  E-value=4.1e-06  Score=48.66  Aligned_cols=35  Identities=20%  Similarity=0.490  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      +.+++|||+|+.|+.+|..+++  .|.+|+++|+.+.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~--~g~~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRK--LGAQVSVVEARER   55 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhh--cccceEEEeeecc
Confidence            3689999999999999999999  7999999998754

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.02  E-value=3.6e-06  Score=49.44  Aligned_cols=34  Identities=29%  Similarity=0.397  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+++|||+|+.|+.+|..|++  .|.+|+++|+.+.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~--~g~~Vtlv~~~~~   66 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAE--AGYHVKLIHRGAM   66 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHH--TTCEEEEECSSSC
T ss_pred             CcEEEECCcHHHHHHHHHhhc--ccceEEEEecccc
Confidence            589999999999999999999  8999999998754

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.99  E-value=9e-06  Score=47.80  Aligned_cols=35  Identities=31%  Similarity=0.476  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|+.|+-+|..|.+  .|.+|+++|+.+.
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~--lG~~Vtii~~~~~   57 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSR--LGSKVTVVEFQPQ   57 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHh--hCcceeEEEeccc
Confidence            3689999999999999999999  8999999998754

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.96  E-value=2e-06  Score=58.46  Aligned_cols=33  Identities=24%  Similarity=0.291  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|++|||+|.+|+.+|.+|++  . .+|+|+|+..
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae--~-~kVLvLEaG~   58 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSE--K-YKVLVLERGS   58 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTT--T-SCEEEECSSB
T ss_pred             CccEEEECccHHHHHHHHHhcC--C-CCEEEEecCC
Confidence            4799999999999999999998  4 8999999874

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.96  E-value=4e-06  Score=53.68  Aligned_cols=35  Identities=31%  Similarity=0.376  Sum_probs=28.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhC-CCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRF-PNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~-~g~~v~vie~~~   62 (90)
                      .+++|||+|++|+.+|.++++.. .+.+|+++|++.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            37999999999999999887632 356899999864

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.1e-05  Score=47.51  Aligned_cols=34  Identities=21%  Similarity=0.258  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+++|||+|+.|+-+|..+++  .|.+|+++++...
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~   56 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDK   56 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhc--CCcEEEEEeeccc
Confidence            689999999999999999999  8999999999753

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.89  E-value=8.2e-06  Score=49.18  Aligned_cols=33  Identities=36%  Similarity=0.430  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      +|+|||+|++|+.+|..|++   +.+|+|+++.+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~---~~~Vtvv~~~~~~   34 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ---TYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT---TSEEEEECSSSSC
T ss_pred             eEEEECCcHHHHHHHHHHHc---CCCEEEEeccccc
Confidence            79999999999999999976   6699999987543

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.88  E-value=1.2e-05  Score=46.94  Aligned_cols=35  Identities=31%  Similarity=0.473  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|+.|+-+|..+++  .|.+|+++++...
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~--~G~~Vtiv~~~~~   56 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWAR--LGAEVTVLEAMDK   56 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHH--cCCceEEEEeecc
Confidence            3689999999999999999999  8999999998643

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.84  E-value=1.4e-05  Score=46.96  Aligned_cols=32  Identities=31%  Similarity=0.325  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+++|||+|+.|+.+|..+++  .|.+|+|++++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~--lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAG--IGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhh--cCCeEEEEEec
Confidence            589999999999999999999  89999999865

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.81  E-value=9.1e-06  Score=49.12  Aligned_cols=33  Identities=27%  Similarity=0.340  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .++|+|+|+|..|..+|..|.+  .|.+|+|+|++
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~--~g~~V~v~dr~   34 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTD--SGIKVTVACRT   34 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHT--TTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEECC
Confidence            3689999999999999999999  89999999976

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.80  E-value=1.1e-05  Score=47.42  Aligned_cols=36  Identities=31%  Similarity=0.445  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ..+++|||+|+.|+-.|..+.+  .|.+|+++|+.+..
T Consensus        25 p~~~viiG~G~iglE~A~~~~~--~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGR--IGSEVTVVEFASEI   60 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHH--HTCEEEEECSSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHh--cCCeEEEEEEcccc
Confidence            4689999999999999999999  79999999987543

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.6e-05  Score=50.38  Aligned_cols=37  Identities=19%  Similarity=0.389  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+.+++|||+|++|+.+|..|++..+..+|++++++.
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~   39 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDP   39 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence            3468999999999999999998865566899998753

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.77  E-value=1.9e-05  Score=47.97  Aligned_cols=33  Identities=24%  Similarity=0.429  Sum_probs=27.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+|+|||+|++|+.+|..|++  .+.+++|++..
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~--~g~~v~v~~~~   35 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRA--SGWEGNIRLVG   35 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHH--TTCCSEEEEEC
T ss_pred             CCCEEEECCcHHHHHHHHHHHH--cCCceEEEEec
Confidence            3589999999999999999999  77777766654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.77  E-value=2.8e-05  Score=45.00  Aligned_cols=35  Identities=6%  Similarity=0.086  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|+.|+-.|..|++  .+.+|+++++.+.
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~--~g~~vt~i~~~~~   56 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNA--TGRRTVMLVRTEP   56 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--cchhheEeeccch
Confidence            3689999999999999999999  8999999998743

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=3.2e-05  Score=43.26  Aligned_cols=36  Identities=22%  Similarity=0.336  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      .++|+|+|.|.+|+++|..|.+  .|.+|+++|.+..+
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~--~g~~v~~~D~~~~~   40 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLA--RGVTPRVMDTRMTP   40 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHH--TTCCCEEEESSSSC
T ss_pred             CCEEEEEeECHHHHHHHHHHHH--CCCEEEEeeCCcCc
Confidence            4589999999999999999999  89999999986543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.72  E-value=2.5e-05  Score=47.65  Aligned_cols=32  Identities=25%  Similarity=0.129  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ++++|||+|..|+.+|..|.+  .|.+|+++++.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~--~G~~V~~~~r~   33 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLAL--KGQSVLAWDID   33 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHH--CCCEEEEEECC
Confidence            579999999999999999999  89999999985

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.71  E-value=2.3e-05  Score=46.29  Aligned_cols=35  Identities=26%  Similarity=0.337  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..+++|||+|+.|+-+|..+++  .|.+|+++|+.+.
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~--~G~~Vtive~~~~   60 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYST--LGSRLDVVEMMDG   60 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHH--HTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhc--CCCEEEEEEeecc
Confidence            3689999999999999999999  7999999998643

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=6.8e-05  Score=44.93  Aligned_cols=32  Identities=22%  Similarity=0.250  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|+|+|+|..|...|..|.+  .|.+|+++++..
T Consensus         2 kI~IiGaG~iG~~~a~~L~~--~G~~V~~~~r~~   33 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCK--QGHEVQGWLRVP   33 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEECSSC
T ss_pred             EEEEECcCHHHHHHHHHHHH--CCCceEEEEcCH
Confidence            79999999999999999999  899999999864

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.52  E-value=3.3e-05  Score=47.25  Aligned_cols=34  Identities=32%  Similarity=0.417  Sum_probs=25.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD   60 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~   60 (90)
                      +.+|+|||+|++|+.+|..|++.....+++++++
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEec
Confidence            4579999999999999999998322334554443

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.43  E-value=0.0001  Score=42.59  Aligned_cols=37  Identities=19%  Similarity=0.132  Sum_probs=29.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhC-CCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRF-PNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~-~g~~v~vie~~~~   63 (90)
                      ..+++|||+|+.|+.+|..+.+.. .+.+|+++|+.+.
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence            358999999999999998776521 4568999998644

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.38  E-value=0.00013  Score=41.99  Aligned_cols=37  Identities=14%  Similarity=0.047  Sum_probs=29.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhC-CCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRF-PNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~-~g~~v~vie~~~~   63 (90)
                      +.+++|||+|++|+.+|..+.+.. .+.+|+++|+.+.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            368999999999999997665421 4789999998643

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.36  E-value=0.00015  Score=42.55  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|+|+|+|..|..+|..|.+  .|.+|+++|+++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~--~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSE--KGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHH--CCCCcceecCCh
Confidence            79999999999999999998  899999999864

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00019  Score=42.53  Aligned_cols=37  Identities=22%  Similarity=0.349  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhh--CCCCcEEEEccCCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRR--FPNCDVTVIADKFNM   64 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~--~~g~~v~vie~~~~~   64 (90)
                      .+++|||+|+.|+.+|..|.+.  ..|.+|+++++...+
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~   76 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN   76 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccC
Confidence            5899999999999999888531  148899999987543

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.29  E-value=0.00011  Score=46.14  Aligned_cols=31  Identities=23%  Similarity=0.326  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||.|..|+.+|..+++  .|.+|+.+|.+
T Consensus         2 kI~ViGlG~vGl~~a~~la~--~g~~V~g~D~n   32 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSA--RGHEVIGVDVS   32 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHH--TTCEEEEECSC
T ss_pred             EEEEECCCHhHHHHHHHHHh--CCCcEEEEeCC
Confidence            69999999999999999999  89999999975

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00029  Score=44.12  Aligned_cols=33  Identities=18%  Similarity=0.370  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.|||+|..|...|..++.  .|++|+++|.++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAA--TGHTVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHh--CCCcEEEEECCh
Confidence            589999999999999999998  899999999763

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.22  E-value=0.00021  Score=41.64  Aligned_cols=33  Identities=27%  Similarity=0.344  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ++++|+|.|..|..+|..|.+  .|.+|+++|+++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~--~g~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHR--MGHEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTCCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCeEEEecCcH
Confidence            368999999999999999999  899999999863

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.16  E-value=0.00025  Score=44.18  Aligned_cols=32  Identities=25%  Similarity=0.356  Sum_probs=29.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|...|..++.  .|.+|+++|.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~--~G~~V~l~D~~   36 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSAS--KGTPILMKDIN   36 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CCCeEEEEECC
Confidence            479999999999999998888  89999999976

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.15  E-value=0.00048  Score=41.52  Aligned_cols=36  Identities=19%  Similarity=0.349  Sum_probs=29.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.+|.|||+|..|..+|+.|.++.-..++.++|.+
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~   39 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence            456999999999999999999984223479999965

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.11  E-value=0.00042  Score=43.03  Aligned_cols=34  Identities=26%  Similarity=0.362  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+++|+|+|.+|+.++..+.+  -|.+|+++|.+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~--lGA~V~~~D~~   64 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVG--LGAQVQIFDIN   64 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCcEEEEECCChHHHHHHHHHhh--CCCEEEEEeCc
Confidence            45799999999999999999998  89999999976

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.10  E-value=0.00047  Score=41.82  Aligned_cols=37  Identities=24%  Similarity=0.297  Sum_probs=29.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          24 MGSNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        24 ~~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      +....+|.|||+|..|..+|+.|.+  .+. +++++|.++
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~--~~~~el~L~D~~~   41 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCAL--RELADVVLYDVVK   41 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHh--CCCceEEEEEecc
Confidence            3455799999999999999998887  344 799998653

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.07  E-value=0.00026  Score=42.36  Aligned_cols=34  Identities=21%  Similarity=0.626  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..++++|||||..|+.-+..|.+  .|.+|+|+..+
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~--~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMP--TGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGG--GTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            45799999999999999999999  89999999654

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.06  E-value=0.00057  Score=42.92  Aligned_cols=35  Identities=20%  Similarity=0.323  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...+|+|+|+|.+|+.++....+  -|..|+++|.+.
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~--lGA~V~v~D~~~   62 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKR--LGAVVMATDVRA   62 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCS
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHH--cCCEEEEEeccH
Confidence            44699999999999999998888  899999999764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.99  E-value=0.00058  Score=41.09  Aligned_cols=31  Identities=29%  Similarity=0.500  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||.|..|.+.|..|.+  .|.+|+++|++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~--~g~~V~~~d~~   32 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRR--RGHYLIGVSRQ   32 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHH--CCCEEEEEECC
Confidence            69999999999999999998  89999999986

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.96  E-value=0.00072  Score=38.61  Aligned_cols=35  Identities=26%  Similarity=0.285  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..++++|||+|..|..-|..|.+  .|.+|++++...
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~--~ga~v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLE--AGARLTVNALTF   45 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHH--TTBEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeccC
Confidence            45799999999999999999999  899999998654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.93  E-value=0.0012  Score=39.16  Aligned_cols=33  Identities=24%  Similarity=0.369  Sum_probs=30.3

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILG-AGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG-~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.||| .|..|...|..|.+  .|++|.++|+..
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~--~G~~V~~~d~~~   43 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRA--SGYPISILDRED   43 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHT--TTCCEEEECTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHH--cCCCcEeccccc
Confidence            5899999 69999999999999  899999999864

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.87  E-value=0.00047  Score=43.04  Aligned_cols=32  Identities=25%  Similarity=0.408  Sum_probs=29.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|+|+|+|.-|.++|..|.+  .+.+|+++.++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~--~g~~V~l~~r~   39 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSK--KCREVCVWHMN   39 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT--TEEEEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHH--cCCeEEEEEec
Confidence            479999999999999999999  78899999864

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.84  E-value=0.0012  Score=39.35  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=28.9

Q ss_pred             CcEEEE--CCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAIL--GAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~Ii--G~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..++|+  |+|+.|+.+|-.|++  .|.+|++++..+.
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~--~G~~Vtlv~~~~~   75 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLAT--AGHEVTIVSGVHL   75 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHH--TTCEEEEEESSCT
T ss_pred             CceEEEecCCChHHHHHHHHHHH--cCCeEEEEecCCc
Confidence            355555  999999999999999  8999999998643

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.70  E-value=0.001  Score=41.11  Aligned_cols=30  Identities=33%  Similarity=0.532  Sum_probs=26.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||.|..|+.+|..+++   |.+|+.+|.+
T Consensus         2 kI~ViGlG~vGl~~a~~~a~---g~~V~g~Din   31 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLSL---QNEVTIVDIL   31 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHTT---TSEEEEECSC
T ss_pred             EEEEECCChhHHHHHHHHHC---CCcEEEEECC
Confidence            69999999999999987754   8899999965

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.50  E-value=0.0037  Score=37.42  Aligned_cols=35  Identities=23%  Similarity=0.425  Sum_probs=28.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+|.|||+|..|..+|+.|..+....++.++|..
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            46899999999999999999884223379999964

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.42  E-value=0.0058  Score=36.70  Aligned_cols=35  Identities=26%  Similarity=0.214  Sum_probs=28.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      ...+|+|||||-+|+-+|..+.+  .|. +|+++.+..
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r--~GA~~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALR--CGARRVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHH--TTCSEEEEECSSC
T ss_pred             CCCEEEEECCChhHHHHHHHHHH--cCCcceeEEEeCC
Confidence            34689999999999999998888  665 588887653

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.41  E-value=0.0054  Score=37.34  Aligned_cols=34  Identities=18%  Similarity=0.499  Sum_probs=29.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~   61 (90)
                      .+.+|.|||+|..|..+|+.|..  .++  ++.++|.+
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~--~~l~~ElvLiD~~   54 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILG--KSLADELALVDVL   54 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh--cCCCcEEEEEEec
Confidence            34699999999999999999998  555  79999965

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.41  E-value=0.0025  Score=37.73  Aligned_cols=31  Identities=32%  Similarity=0.518  Sum_probs=28.2

Q ss_pred             cEEEE-CCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAIL-GAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~Ii-G~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|| |+|..|..+|..|.+  .|.+|++..++
T Consensus         2 ki~vigGaG~iG~alA~~la~--~G~~V~l~~R~   33 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLAT--LGHEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHT--TTCEEEEEESS
T ss_pred             EEEEEeCCcHHHHHHHHHHHH--CCCEEEEEECC
Confidence            68999 679999999999999  89999999876

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.39  E-value=0.0025  Score=37.90  Aligned_cols=33  Identities=30%  Similarity=0.445  Sum_probs=27.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      .+|.|||+|..|..+|+.|.+  .+. ++.++|..+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~--~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAA--KELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--HTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCcceEEEEeecc
Confidence            489999999999999999987  344 799999653

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.38  E-value=0.0019  Score=39.59  Aligned_cols=30  Identities=30%  Similarity=0.468  Sum_probs=27.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD   60 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~   60 (90)
                      +|.|||+|.-|.+.|..|.+  .+.+|+++.+
T Consensus         2 kI~ViGaG~~GtalA~~la~--~g~~V~l~~r   31 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVD--NGNEVRIWGT   31 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHH--HCCEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHH--CCCEEEEEEe
Confidence            79999999999999999998  7899999865

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.0033  Score=38.11  Aligned_cols=34  Identities=24%  Similarity=0.408  Sum_probs=29.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..++++|+|+|-++.++++.|.+  .+.+|+|+.+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~--~g~~i~I~nRt   50 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLS--LDCAVTITNRT   50 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHhcc--cceEEEeccch
Confidence            34689999999999999999998  67889999875

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0066  Score=34.75  Aligned_cols=36  Identities=28%  Similarity=0.469  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ...+|.|+|+|--|.+.+....+  -|.++.++|.++.
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~--lG~~v~v~d~~~~   45 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQR--LGVEVIAVDRYAD   45 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHT--TTCEEEEEESSTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHH--CCCEEEEEcCCCC
Confidence            34589999999999999999988  8999999998643

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.35  E-value=0.0035  Score=37.53  Aligned_cols=34  Identities=26%  Similarity=0.326  Sum_probs=27.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ++|.|||+|..|..+|+.|..+.--.++.++|.+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            5899999999999999999873222379999864

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.35  E-value=0.0036  Score=38.05  Aligned_cols=33  Identities=15%  Similarity=0.339  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.+||.|..|...|..|.+  .|.+|.++|+.+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~--~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMND--HGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH--TTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHH--CCCeEEEEcCCH
Confidence            579999999999999999999  899999999763

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.31  E-value=0.0051  Score=37.40  Aligned_cols=36  Identities=17%  Similarity=0.386  Sum_probs=28.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.+|.|||+|..|..+|+.|..+....++.++|.+
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            345899999999999999999883222379999965

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.29  E-value=0.0041  Score=37.00  Aligned_cols=35  Identities=34%  Similarity=0.466  Sum_probs=27.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|.|||+|..|..+|+.+..+...-++.++|...
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            47999999999999999998832223799999653

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.23  E-value=0.0044  Score=37.03  Aligned_cols=34  Identities=26%  Similarity=0.185  Sum_probs=27.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|.|||.|..|.+.|..|.+.....+|+.+|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            6999999999999999999832234688888753

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.20  E-value=0.0048  Score=36.48  Aligned_cols=34  Identities=24%  Similarity=0.420  Sum_probs=27.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|.|||+|..|..+|+.|..+....++.++|.++
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            7999999999999999998832224799999764

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.09  E-value=0.0069  Score=36.38  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=28.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      ..+|.|||+|..|-.+|+.|.+  .+. ++.++|.++
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~--~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQ--KNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCCeEEEEeccC
Confidence            3589999999999999998887  444 799999753

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.99  E-value=0.0066  Score=36.65  Aligned_cols=31  Identities=26%  Similarity=0.534  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||.|..|...|..|.+  .|.+|.++|++
T Consensus         3 kIGvIGlG~MG~~ma~~L~~--~G~~V~~~dr~   33 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAE--KGFKVAVFNRT   33 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             EEEEEeehHHHHHHHHHHHH--CCCeEEEEECC
Confidence            69999999999999999999  89999999975

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.93  E-value=0.0053  Score=34.51  Aligned_cols=34  Identities=9%  Similarity=-0.054  Sum_probs=27.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..++|+|||+|.+|.-.|..|++  ...+++++.+.
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~--~ak~v~~~~~r   64 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTP--VAKHPIYQSLL   64 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTT--TSCSSEEEECT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHH--hcCEEEEEEec
Confidence            45799999999999999999987  55665555443

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.92  E-value=0.0082  Score=35.75  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=27.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|..+|+.+..+.-..++.++|.+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~   35 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   35 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            3799999999999999999883222379999965

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.90  E-value=0.0076  Score=35.62  Aligned_cols=33  Identities=30%  Similarity=0.387  Sum_probs=27.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||+|..|..+|+.+..+.-..++.++|.+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~   34 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            799999999999999998874333479999964

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.89  E-value=0.0043  Score=37.16  Aligned_cols=31  Identities=26%  Similarity=0.463  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||.|..|...|..|.+  .|.+|.++|+.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~--~G~~V~~~d~~   32 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLK--AGYSLVVSDRN   32 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHH--TTCEEEEECSC
T ss_pred             EEEEEehhHHHHHHHHHHHH--CCCeEEEEeCC
Confidence            69999999999999999999  89999999976

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.88  E-value=0.0044  Score=37.17  Aligned_cols=31  Identities=23%  Similarity=0.349  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.+||.|..|...|..|.+  .|.+|.++|++
T Consensus         3 kIg~IGlG~MG~~iA~~L~~--~g~~v~~~d~~   33 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLK--AGYLLNVFDLV   33 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHH--TTCEEEEECSS
T ss_pred             EEEEEEEHHHHHHHHHHHHH--CCCeEEEEECc
Confidence            69999999999999999999  89999999986

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=95.83  E-value=0.012  Score=34.02  Aligned_cols=35  Identities=31%  Similarity=0.450  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .++|+|||+|-+++-.|..|.+  ...+|+++-+...
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~--~a~~V~li~r~~~   61 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSN--IASEVHLIHRRDG   61 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTT--TSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHhh--cCCcEEEEeeccc
Confidence            4689999999999999999998  7789999987643

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.81  E-value=0.0094  Score=35.52  Aligned_cols=32  Identities=31%  Similarity=0.398  Sum_probs=27.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+++|+|+|..|+.++..++.  .|.+|+++|.+
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~--~Ga~vi~v~~~   59 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKA--YGAFVVCTARS   59 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CEEEEEcccccchhhHhhHhh--hcccccccchH
Confidence            479999999999999887777  78899999875

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.70  E-value=0.014  Score=34.12  Aligned_cols=36  Identities=22%  Similarity=0.286  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      ..++|+|||+|-+++--|..|++  ...+|+++-+...
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~--~a~~V~li~r~~~   68 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTK--YGSKVYIIHRRDA   68 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTT--TSSEEEEECSSSS
T ss_pred             CCCEEEEEcCchHHHHHHHHHhC--CCCcEEEEEeccc
Confidence            34699999999999999999998  6789999977643

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.011  Score=34.88  Aligned_cols=32  Identities=28%  Similarity=0.442  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .++|+|.|..|..++..|.+  .+.+|+++|.++
T Consensus         5 HiII~G~g~~g~~l~~~L~~--~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQ--RGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHH--TTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHH--cCCCEEEEeccc
Confidence            69999999999999999998  789999998753

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.65  E-value=0.0093  Score=35.21  Aligned_cols=32  Identities=19%  Similarity=0.291  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|.|||.|..|...|..|.+  .|.+++++++..
T Consensus         2 kIgiIG~G~mG~~ia~~l~~--~g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRS--RGVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHH--TTCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHH--CCCeEEEEcCch
Confidence            69999999999999999999  899999998653

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.63  E-value=0.012  Score=34.93  Aligned_cols=33  Identities=18%  Similarity=0.346  Sum_probs=26.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.|||+|..|..+|+.|..+.--.++.++|.+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence            799999999999999999873222369999965

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.016  Score=33.50  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=30.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..++|+|||+|-+.+-.|..|.+  ...+|+++-+.+
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~--~a~~V~li~r~~   63 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAG--IVEHVTLLEFAP   63 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHT--TBSEEEEECSSS
T ss_pred             CCceEEEEeCCHHHHHHHHhhhc--cCCceEEEeccc
Confidence            34699999999999999999998  677899997654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=95.49  E-value=0.0093  Score=36.01  Aligned_cols=33  Identities=18%  Similarity=0.327  Sum_probs=28.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ..+|+|+|+|-++.++++.|.+  .|. +|+|+.++
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~--~g~~~I~I~nR~   50 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKN--SGFEKLKIYARN   50 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHH--TTCCCEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--CCCCEEEEeccc
Confidence            4689999999999999999998  675 79999774

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.47  E-value=0.013  Score=41.44  Aligned_cols=37  Identities=19%  Similarity=0.227  Sum_probs=32.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      +..+||+|+|.|..=..+|..|++  .|.+|+-+|++..
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr--~GkkVLHiD~N~y   40 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSR--SGQRVLHVDSRSY   40 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSS
T ss_pred             CCccCEEEECCChHHHHHHHHHHh--cCCEEEEecCCCc
Confidence            356899999999998888999999  8999999999754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.39  E-value=0.013  Score=35.04  Aligned_cols=34  Identities=29%  Similarity=0.324  Sum_probs=28.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...++|+|+|..|+.++..++.  .|.+|.+++.++
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~--~G~~vi~~~~~~   61 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKA--MGAETYVISRSS   61 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSS
T ss_pred             CCEEEEECCCCcchhHHHHhhh--ccccccccccch
Confidence            3579999999999998877766  688999888764

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.015  Score=35.56  Aligned_cols=34  Identities=35%  Similarity=0.505  Sum_probs=29.5

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .++|+|.|| |..|..++..|.+  .|.+|+++.+++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~--~g~~V~~~~R~~   37 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQ--AGYEVTVLVRDS   37 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHH--TTCEEEEEESCG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH--CcCEEEEEEcCh
Confidence            358999996 9999999999998  799999998753

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.016  Score=34.57  Aligned_cols=32  Identities=38%  Similarity=0.448  Sum_probs=27.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ..|+|+|+|+.|+.++..+..  .|. +|+++|.+
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~--~G~~~Vi~~d~~   60 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKA--MGAAQVVVTDLS   60 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESC
T ss_pred             CEEEEECCCccHHHHHHHHHH--cCCceEEeccCC
Confidence            479999999999999988877  676 68888875

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=95.38  E-value=0.011  Score=36.91  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=30.2

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +++|+|.|| |..|-.++..|.+  .|.+|.++++..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~--~G~~V~~l~R~~   37 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLD--LGHPTFLLVRES   37 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHH--TTCCEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH--CCCeEEEEECCC
Confidence            468999998 8999999999998  799999999764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.36  E-value=0.017  Score=34.21  Aligned_cols=33  Identities=24%  Similarity=0.181  Sum_probs=27.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+++|+|+|..|+.++..++.  .|.+|.++++.
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~--~G~~Vi~~~~~   60 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARA--MGLHVAAIDID   60 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCEEEEeeccccHHHHHHHHHH--cCCccceecch
Confidence            3479999999999998887776  68899999875

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.31  E-value=0.01  Score=37.67  Aligned_cols=33  Identities=21%  Similarity=0.382  Sum_probs=29.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ..+|+|+|+|..|..+|..|.+  .|. +++++|.+
T Consensus        30 ~~~VliiG~GglGs~va~~La~--~Gvg~i~lvD~D   63 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLAS--AGVGNLTLLDFD   63 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHH--HTCSEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--cCCCeEEEECCc
Confidence            4699999999999999999999  787 79999976

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.23  E-value=0.014  Score=34.75  Aligned_cols=31  Identities=42%  Similarity=0.645  Sum_probs=26.4

Q ss_pred             cEEEECC-CHHHHHHHHHHHhhCCCC--cEEEEccC
Q psy1704          29 KVAILGA-GIIGLSTALELQRRFPNC--DVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~-G~~Gl~~A~~l~~~~~g~--~v~vie~~   61 (90)
                      +|.|||+ |..|..+|+.|..  .+.  ++.++|..
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~--~~l~~el~L~D~~   35 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAK--EPFMKDLVLIGRE   35 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHT--CTTCCEEEEEECG
T ss_pred             EEEEECCCChHHHHHHHHHHh--CCcccccccccch
Confidence            6999996 9999999999988  553  79999854

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.21  E-value=0.0098  Score=35.40  Aligned_cols=31  Identities=39%  Similarity=0.453  Sum_probs=26.3

Q ss_pred             cEEEECC-CHHHHHHHHHHHhhCCCC--cEEEEccC
Q psy1704          29 KVAILGA-GIIGLSTALELQRRFPNC--DVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~-G~~Gl~~A~~l~~~~~g~--~v~vie~~   61 (90)
                      +|.|||+ |..|..+|+.|..  .+.  ++.++|.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~--~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKN--SPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHT--CTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHh--CCccceEEEEecc
Confidence            7999996 9999999999988  554  68999865

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.15  E-value=0.012  Score=35.69  Aligned_cols=34  Identities=26%  Similarity=0.338  Sum_probs=29.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..++++|+|+|-++.++++.|.+  .+.+|+|+.+.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~--~~~~i~I~nR~   50 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQ--AQQNIVLANRT   50 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHH--TTCEEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcc--cCceeeeccch
Confidence            34689999999999999999988  67789999875

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.03  E-value=0.018  Score=34.85  Aligned_cols=33  Identities=24%  Similarity=0.453  Sum_probs=27.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..++++|+|+|-++.++++.|.+  .+ +|+|+.+.
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~--~~-~i~I~nR~   49 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAK--DN-NIIIANRT   49 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTS--SS-EEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcc--cc-ceeeehhh
Confidence            44689999999999999999977  55 89999664

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.91  E-value=0.02  Score=33.84  Aligned_cols=31  Identities=16%  Similarity=0.364  Sum_probs=28.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.+||+|..|.+.+..|.+  .+.+++++++.
T Consensus         2 kIg~IG~G~mG~al~~~l~~--~~~~i~v~~r~   32 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQ--TPHELIISGSS   32 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTT--SSCEEEEECSS
T ss_pred             EEEEEeccHHHHHHHHHHHh--CCCeEEEEcCh
Confidence            68999999999999999988  78899999875

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.86  E-value=0.02  Score=34.55  Aligned_cols=33  Identities=33%  Similarity=0.429  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ..+|+|+|+|..|+.+...++.  .|. +|+++|.+
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~--~Ga~~Vi~~~~~   62 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARS--LGAENVIVIAGS   62 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTBSEEEEEESC
T ss_pred             CCEEEEECCCccchhheecccc--cccccccccccc
Confidence            3579999999999988887777  676 68888865

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=94.68  E-value=0.029  Score=33.23  Aligned_cols=32  Identities=25%  Similarity=0.406  Sum_probs=25.7

Q ss_pred             cEEEEC-CCHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704          29 KVAILG-AGIIGLSTALELQRRFPNCDVTVIAD   60 (90)
Q Consensus        29 ~v~IiG-~G~~Gl~~A~~l~~~~~g~~v~vie~   60 (90)
                      +|.||| +|..|-.+|+.|..+....++.++|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            699999 69999999999988322236899883

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.047  Score=29.32  Aligned_cols=47  Identities=13%  Similarity=0.075  Sum_probs=34.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP   77 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~   77 (90)
                      ++|.|+|+|--|.+.+....+  -|.++.+++.+..+- +.....-++..
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~--LG~~v~vldp~~~~p-a~~~a~dvIT~   48 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEP--LGIAVWPVGLDAEPA-AVPFQQSVITA   48 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGG--GTEEEEEECTTSCGG-GSCGGGSEEEE
T ss_pred             CEEEEEcCCHHHHHHHHHHHH--cCCEEEEEcCCCCCc-ccccccceEEE
Confidence            478999999999999999888  799999999764322 22334445544

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.62  E-value=0.026  Score=35.53  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=28.9

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +.+|+|.|| |..|..++..|.+  .|.+|+++.+.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~--~G~~V~~~~R~   36 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASIS--LGHPTYVLFRP   36 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHH--TTCCEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh--CCCEEEEEECC
Confidence            347999997 9999999999998  79999998875

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.038  Score=33.48  Aligned_cols=34  Identities=12%  Similarity=0.225  Sum_probs=28.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+++|+|+|-++.++++.|.+  .+. +++++.+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~--~g~~~i~i~nR~   51 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAI--EGLKEIKLFNRR   51 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEECS
T ss_pred             CCCEEEEECCcHHHHHHHHHHhh--cCCceEeeeccc
Confidence            34689999999999999999988  555 68888875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.57  E-value=0.037  Score=32.86  Aligned_cols=33  Identities=18%  Similarity=0.241  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...|+|+|+|..|+.+...++.  .|.++++++..
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~--~Ga~~i~~~~~   63 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHA--MGAHVVAFTTS   63 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCEEEEeccchHHHHHHHHhhc--ccccchhhccc
Confidence            3579999999999988877776  78888888765

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.55  E-value=0.041  Score=33.18  Aligned_cols=33  Identities=15%  Similarity=0.340  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...|+|+|+|..|+.++..++.  .|. +|+++|.+
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~--~Ga~~Vi~~d~~   61 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKL--RGAGRIIGVGSR   61 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHT--TTCSCEEEECCC
T ss_pred             CCEEEEEcCCcchhhhhhhhhc--ccccccccccch
Confidence            3479999999999998887776  675 68888865

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.031  Score=34.11  Aligned_cols=35  Identities=17%  Similarity=0.169  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+.++|+|-|.+|..+|..++.  -|.+|+++|..+
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg--~G~~V~v~e~dp   57 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRG--FGARVIITEIDP   57 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             cCCEEEEeccccccHHHHHHHHh--CCCeeEeeeccc
Confidence            45689999999999999999999  899999999763

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.26  E-value=0.049  Score=35.58  Aligned_cols=33  Identities=33%  Similarity=0.320  Sum_probs=28.7

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+|+|.|| |..|..++..|.+  .|.+|+++|..
T Consensus        15 nMKILVTGgsGfIGs~lv~~L~~--~g~~V~~~d~~   48 (363)
T d2c5aa1          15 NLKISITGAGGFIASHIARRLKH--EGHYVIASDWK   48 (363)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH--CcCEEEEEeCC
Confidence            347999996 9999999999999  79999999865

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.20  E-value=0.11  Score=30.02  Aligned_cols=48  Identities=15%  Similarity=0.225  Sum_probs=34.6

Q ss_pred             CCcEEEECCCH-----------HHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704          27 NHKVAILGAGI-----------IGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE   76 (90)
Q Consensus        27 ~~~v~IiG~G~-----------~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~   76 (90)
                      ..+++|+|+|+           ++..+...|++  .|.++.++..++..-...+..+--++
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~--~g~~~IliN~NPeTVstd~d~aD~lY   62 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALRE--DGYETIMVNCNPETVSTDYDTSDRLY   62 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHH--TTCEEEEECCCTTSSTTSTTSSSEEE
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHh--cCCeEEEEecChhhhhcChhhcCceE
Confidence            46899999985           67788888888  89999999988654333333333333

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.11  E-value=0.035  Score=32.64  Aligned_cols=33  Identities=21%  Similarity=0.181  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...|+|.|+|..|+.++..++.  .|.+|.+++.+
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~--~g~~v~~~~~~   60 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKA--MGLNVVAVDIG   60 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CCEEEEeecccchhhhhHHHhc--CCCeEeccCCC
Confidence            3578999999999988877777  78899988864

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=94.07  E-value=0.036  Score=33.84  Aligned_cols=35  Identities=23%  Similarity=0.200  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+.++|+|-|.+|..+|.+++.  .|.+|+|.|.+|
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg--~Ga~V~V~E~DP   56 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKG--LGARVYITEIDP   56 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHH--HTCEEEEECSCH
T ss_pred             cCCEEEEecccccchhHHHHHHh--CCCEEEEEecCc
Confidence            45789999999999999999998  799999999764

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=94.04  E-value=0.041  Score=33.48  Aligned_cols=34  Identities=18%  Similarity=0.474  Sum_probs=27.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..++|+|||+|-+|.-+|..+.+  .+.+++++-+.
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~--~~~~~~~~~~~   64 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAK--QAAELFVFQRT   64 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHH--HBSEEEEEESS
T ss_pred             CCCEEEEECCCccHHHHHHHHHh--hhccccccccc
Confidence            45799999999999999999988  66666665443

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.04  E-value=0.057  Score=31.94  Aligned_cols=33  Identities=36%  Similarity=0.467  Sum_probs=25.9

Q ss_pred             cEEEEC-CCHHHHHHHHHHHhh-CCCCcEEEEccC
Q psy1704          29 KVAILG-AGIIGLSTALELQRR-FPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG-~G~~Gl~~A~~l~~~-~~g~~v~vie~~   61 (90)
                      +|.||| +|..|-.+|+.|..+ ....++.++|..
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            799999 599999999988643 124579999965

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=94.04  E-value=0.041  Score=32.96  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=28.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...+++|||+|-.|..++..|..  .|. +++|+.+.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~--~g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVD--RGVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHH--HCCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHh--cCCcEEEEEcCc
Confidence            45689999999999999999988  676 68888764

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.95  E-value=0.049  Score=35.35  Aligned_cols=32  Identities=38%  Similarity=0.473  Sum_probs=28.3

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704          27 NHKVAILGA-GIIGLSTALELQRRFPNCDVTVIAD   60 (90)
Q Consensus        27 ~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~   60 (90)
                      .++|+|.|| |..|..++..|.+  .|.+|+++|.
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~--~g~~V~~ld~   34 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLE--AGYLPVVIDN   34 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHH--CcCEEEEEEC
Confidence            358999987 8999999999998  7999999985

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=93.95  E-value=0.039  Score=32.37  Aligned_cols=33  Identities=18%  Similarity=0.226  Sum_probs=27.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +|.+||+|..|.+.+..|.+. .+.++.++++++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~-~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQ-GGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-CSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHC-CCCcEEEEeCCh
Confidence            699999999999999988773 247899999863

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.90  E-value=0.056  Score=32.82  Aligned_cols=34  Identities=24%  Similarity=0.415  Sum_probs=29.4

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..++++|.|+ |-.|..+|..|.+  .|.+|++++++
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~--~G~~V~~~~r~   56 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAG--EGAEVVLCGRK   56 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHh--hccchhhcccc
Confidence            4578999995 7789999999999  89999999875

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.88  E-value=0.0012  Score=41.55  Aligned_cols=34  Identities=18%  Similarity=0.168  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+++|+|+|..|+.+|..|.+  .+.+|+++++.+.
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~r~~~  214 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEE--ANPQIAIPYKRET  214 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTS--SCTTSCCCCCCCC
T ss_pred             CceeEecCchHHHHHHHHHHh--cCCceEEEEeccc
Confidence            579999999999999999998  7899999998653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.82  E-value=0.066  Score=32.25  Aligned_cols=34  Identities=21%  Similarity=0.325  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      ...|+|+|+|..|+.++..++.  .|. .|++.|..+
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~--~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKI--AGASRIIAIDING   63 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCG
T ss_pred             CCEEEEECCChHHHHHHHHHHH--hCCceeeeeccch
Confidence            3579999999999999998887  676 576777653

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.80  E-value=0.02  Score=33.69  Aligned_cols=26  Identities=46%  Similarity=0.698  Sum_probs=22.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNC   53 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~   53 (90)
                      ...+++|||+|..|+-+|..+.+  .|.
T Consensus        28 ~gkrVvVIGgG~~g~d~a~~~~r--~G~   53 (162)
T d1ps9a2          28 VGNKVAIIGCGGIGFDTAMYLSQ--PGE   53 (162)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTC--CSS
T ss_pred             cCCceEEEcCchhHHHHHHHHHH--cCC
Confidence            34699999999999999999988  554

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.47  E-value=0.062  Score=32.99  Aligned_cols=33  Identities=27%  Similarity=0.256  Sum_probs=25.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ..+|+|+|+|+.|+.++..++.  .+. +|+++|..
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~--~ga~~Vi~~d~~   59 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARL--LGAAVVIVGDLN   59 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESC
T ss_pred             CCEEEEECcCHHHHHHHHHHHh--hcccceeeeccc
Confidence            3489999999999888887765  454 67777764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.43  E-value=0.083  Score=31.78  Aligned_cols=34  Identities=18%  Similarity=0.264  Sum_probs=28.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~   62 (90)
                      ...|+|+|+|..|+.+...++.  .| .+|.++|.++
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~--~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKS--AGASRIIGIDLNK   64 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCG
T ss_pred             CCEEEEECCCchhHHHHHHHHH--cCCceEEEecCcH
Confidence            3469999999999999988887  67 4799999753

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.29  E-value=0.041  Score=34.33  Aligned_cols=32  Identities=28%  Similarity=0.371  Sum_probs=28.4

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+|+|.|| |..|-.++..|.+  .|.+|+.+++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~--~g~~Vi~~~r~   34 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKG--KNVEVIPTDVQ   34 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTT--SSEEEEEECTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHh--CCCEEEEeech
Confidence            37999998 9999999999988  78999998875

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.27  E-value=0.091  Score=30.67  Aligned_cols=37  Identities=22%  Similarity=0.264  Sum_probs=30.3

Q ss_pred             CCCcEEEECCCH-----------HHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704          26 SNHKVAILGAGI-----------IGLSTALELQRRFPNCDVTVIADKFNM   64 (90)
Q Consensus        26 ~~~~v~IiG~G~-----------~Gl~~A~~l~~~~~g~~v~vie~~~~~   64 (90)
                      ...+|+|+|+|+           ++..+...|++  .|.++.++..++..
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke--~g~~~iliN~NP~T   53 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALRE--EGYRVINVNSNPAT   53 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHH--HTCEEEEECSCTTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHH--cCCeEEEecCchHh
Confidence            346899999986           57778888888  89999999988643

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=93.22  E-value=0.083  Score=34.08  Aligned_cols=34  Identities=24%  Similarity=0.156  Sum_probs=29.6

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .++|+|.|| |..|..++..|.+  .|.+|..+++..
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~--~g~~V~~~~r~~   42 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQT--MGATVKGYSLTA   42 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH--CCCEEEEEECCC
Confidence            368999995 8999999999999  899999998753

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.99  E-value=0.035  Score=32.03  Aligned_cols=36  Identities=14%  Similarity=0.068  Sum_probs=26.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCc-EEEEccCCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADKFN   63 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~-v~vie~~~~   63 (90)
                      +++++|+|+|-+|..++..+.+. .+.+ +.++|.++.
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~-~~~~iv~fiDdd~~   39 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFG-ESFELRGFFDVDPE   39 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCC-SSEEEEEEEESCTT
T ss_pred             CceEEEEcCCHHHHHHHHhHhhc-CCcEEEEEEeCchH
Confidence            35899999999999888776542 4555 566676643

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=92.77  E-value=0.08  Score=34.31  Aligned_cols=30  Identities=30%  Similarity=0.577  Sum_probs=27.0

Q ss_pred             cEEEECC-CHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704          29 KVAILGA-GIIGLSTALELQRRFPNCDVTVIAD   60 (90)
Q Consensus        29 ~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~   60 (90)
                      +|+|+|| |..|..++..|.+  .|.+|+++|+
T Consensus         2 KiLItG~tGfIG~~l~~~L~~--~g~~V~~~d~   32 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQ--NGHDVIILDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH--TTCEEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHH--CcCEEEEEEC
Confidence            6899988 8899999999999  7899999986

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.087  Score=33.90  Aligned_cols=31  Identities=26%  Similarity=0.466  Sum_probs=27.5

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIAD   60 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~   60 (90)
                      ++|+|.|| |..|..++..|.+  .|.+|+.+++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~--~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMM--DGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--TTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHH--CcCEEEEEeC
Confidence            58999998 8899999999988  7999999875

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=92.72  E-value=0.13  Score=33.37  Aligned_cols=33  Identities=21%  Similarity=0.227  Sum_probs=29.1

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ++.|+|+|+ |..|..++..|.+  .|.+|.++-++
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~--~G~~V~~l~R~   36 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAA--VGHHVRAQVHS   36 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHH--TTCCEEEEESC
T ss_pred             CCEEEEECCChHHHHHHHHHHHh--CCCeEEEEECC
Confidence            468999997 9999999999998  79999988765

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.37  E-value=0.062  Score=37.05  Aligned_cols=34  Identities=26%  Similarity=0.332  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      ..+|+|||+|..|..++..|..  .|. +++|+|.+.
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~--~Gvg~i~lvD~D~   71 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLAL--SGFRQIHVIDMDT   71 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHT--TTCCCEEEECCCB
T ss_pred             cCeEEEECCCHHHHHHHHHHHH--cCCCeEEEEECCC
Confidence            3589999999999999999998  787 799999763

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.26  E-value=0.098  Score=34.48  Aligned_cols=30  Identities=33%  Similarity=0.671  Sum_probs=27.1

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEc
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIA   59 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie   59 (90)
                      .+|+|.|+ |..|..++..|.+  .|.+|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~--~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSK--KNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--TTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHH--CcCEEEEEe
Confidence            47999988 8899999999999  899999997

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.87  E-value=0.13  Score=30.63  Aligned_cols=33  Identities=21%  Similarity=0.296  Sum_probs=24.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCc-EEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~-v~vie~~   61 (90)
                      ..+|+|+|+|..|+.++..++.  .|.+ |.+.|..
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~--~g~~~v~~~~~~   62 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKV--CGASIIIAVDIV   62 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHH--HTCSEEEEEESC
T ss_pred             CCEEEEeCCCHHHhhhhhcccc--cccceeeeeccH
Confidence            4579999999999998887766  4654 5555543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=91.85  E-value=0.13  Score=30.73  Aligned_cols=34  Identities=15%  Similarity=0.300  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      ...|+|+|+|..|+.+...++.  .|. +|.++|.++
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~--~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKA--AGASRIIGVGTHK   62 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--HTCSEEEEECSCG
T ss_pred             CCEEEEECCCchhHHHHHHHHH--cCCceeeccCChH
Confidence            3479999999999999888877  564 688887653

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=91.79  E-value=0.063  Score=29.59  Aligned_cols=37  Identities=19%  Similarity=0.161  Sum_probs=30.1

Q ss_pred             CCCCCcEEEECCCHHHHHH-HHHHHhhCCCCcEEEEccCC
Q psy1704          24 MGSNHKVAILGAGIIGLST-ALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        24 ~~~~~~v~IiG~G~~Gl~~-A~~l~~~~~g~~v~vie~~~   62 (90)
                      +....++.+||-|-+|+++ |..|.+  .|.+|+-.|...
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~--~G~~VsGSD~~~   42 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLN--EGYQISGSDIAD   42 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHH--HTCEEEEEESCC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHh--CCCEEEEEeCCC
Confidence            3345689999998889776 888888  799999999764

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.70  E-value=0.31  Score=29.49  Aligned_cols=36  Identities=28%  Similarity=0.255  Sum_probs=31.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ....++.|||.|..|-..|..+..  -|.+|..+++..
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~--~g~~v~~~d~~~   75 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAA--LGAQVRGFSRTP   75 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHH--TTCEEEEECSSC
T ss_pred             ccCceEEEeccccccccceeeeec--cccccccccccc
Confidence            345789999999999999998887  799999999764

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=91.22  E-value=0.16  Score=32.16  Aligned_cols=30  Identities=27%  Similarity=0.366  Sum_probs=26.4

Q ss_pred             cEEEECC-CHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704          29 KVAILGA-GIIGLSTALELQRRFPNCDVTVIAD   60 (90)
Q Consensus        29 ~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~   60 (90)
                      +|+|.|| |..|..+...|.+  .|.+|+.+|+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~--~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALS--QGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH--TTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHH--CcCEEEEEEC
Confidence            6888887 8999999999998  7899999974

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.03  E-value=0.26  Score=28.93  Aligned_cols=33  Identities=15%  Similarity=0.354  Sum_probs=25.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~   62 (90)
                      ..|+|+|+|..|+.++..++.  .+. .|+++|..+
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~--~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHS--AGAKRIIAVDLNP   63 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCG
T ss_pred             CEEEEEecCCccchHHHHHHH--HhhchheeecchH
Confidence            468899999999988887776  444 688888653

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.03  E-value=0.21  Score=31.65  Aligned_cols=33  Identities=18%  Similarity=0.118  Sum_probs=28.5

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ++|+|.|+ |..|..++..|.+  .|.+|..+++..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~--~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLE--KGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--TTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHH--CcCEEEEEECCC
Confidence            36889988 8999999999998  799999998753

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.74  E-value=0.14  Score=36.04  Aligned_cols=33  Identities=21%  Similarity=0.315  Sum_probs=29.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ..+|+|||+|..|..++..|..  .|. +++|+|.+
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl--~GVg~itivD~d   58 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVL--PGIGSFTIIDGN   58 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHT--TTCSEEEEECCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--hcCCEEEEEcCC
Confidence            3589999999999999999998  887 79999875

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=90.70  E-value=0.26  Score=30.52  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+++|-|-|-+|..+|..|.+  .|.+|++.|.+
T Consensus        26 ~gk~v~IqG~G~VG~~~A~~L~~--~Gakvvv~d~d   59 (201)
T d1c1da1          26 DGLTVLVQGLGAVGGSLASLAAE--AGAQLLVADTD   59 (201)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEecch
Confidence            45689999999999999999999  89999999865

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=90.58  E-value=0.41  Score=30.38  Aligned_cols=32  Identities=16%  Similarity=0.151  Sum_probs=26.2

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +.++|.|+ +-.|..+|..|.+  .|.+|++.+++
T Consensus        26 K~alITGas~GIG~aiA~~la~--~Ga~Vii~~r~   58 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSS--LGAQCVIASRK   58 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH--cCCEEEEEECC
Confidence            56667775 5579999999999  89999999875

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=90.24  E-value=0.24  Score=31.39  Aligned_cols=35  Identities=23%  Similarity=0.215  Sum_probs=28.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.++++.|+|.+|+.+|..+.+. .-.++.++|+.
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~-~~~~i~~~D~~   59 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDL-GVKNVVAVDRK   59 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH-TCCEEEEEETT
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHh-cccceEeecce
Confidence            456999999999999999988773 23469999975

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=90.21  E-value=0.14  Score=30.82  Aligned_cols=34  Identities=29%  Similarity=0.379  Sum_probs=23.4

Q ss_pred             CcEEEECCCHHHHHHHHH--HHh--hCCCCcEEEEccC
Q psy1704          28 HKVAILGAGIIGLSTALE--LQR--RFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~--l~~--~~~g~~v~vie~~   61 (90)
                      .+|.|||+|..|..+++.  +.+  ...+.+++++|.+
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did   40 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDID   40 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSC
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCC
Confidence            489999999988765542  322  1134589999975

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=90.15  E-value=0.36  Score=28.35  Aligned_cols=33  Identities=27%  Similarity=0.281  Sum_probs=25.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~   61 (90)
                      ...++|+|+|..|+.++..++.  .| ..|++.|.+
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~--~g~~~vv~~~~~   66 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKV--MTPATVIALDVK   66 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--HCCCEEEEEESS
T ss_pred             CCEEEEeCCChHHHHHHHHHHh--hcCcccccccch
Confidence            3578999999999998877765  34 467777764

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.14  E-value=0.22  Score=30.85  Aligned_cols=33  Identities=18%  Similarity=0.118  Sum_probs=27.8

Q ss_pred             CcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGI-IGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+|+|.|+.- .|..+|..|.+  .|.+|.++++..
T Consensus         3 gkVlITGas~GIG~aia~~l~~--~G~~V~~~~~~~   36 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKK--NGYTVLNIDLSA   36 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHH--TTEEEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHH--CCCEEEEEECCc
Confidence            4789999854 68999999999  899999998764

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=90.09  E-value=0.31  Score=29.86  Aligned_cols=35  Identities=17%  Similarity=0.212  Sum_probs=30.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ...++.|||.|..|..+|..+..  -|.+|..+|+..
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~--fg~~v~~~d~~~   78 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKG--FGAKVIAYDPYP   78 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSC
T ss_pred             cceeeeeeecccccccccccccc--cceeeeccCCcc
Confidence            44689999999999999999887  789999999753

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.92  E-value=0.35  Score=29.92  Aligned_cols=34  Identities=18%  Similarity=0.164  Sum_probs=27.9

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAG-IIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G-~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+.++|.|+. -.|..+|..|.+  .|.+|.+++...
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~--~G~~V~~~~~~~   36 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRA--RNWWVASIDVVE   36 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHT--TTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH--CCCEEEEEeCCc
Confidence            3578999984 469999999999  899999997653

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.64  E-value=0.15  Score=30.27  Aligned_cols=30  Identities=20%  Similarity=0.189  Sum_probs=24.3

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEc
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIA   59 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie   59 (90)
                      .+|+|.|+ |..|..++..|.+  .|.++.+++
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~--~g~~v~v~~   34 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKE--GSDKFVAKG   34 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHH--TTTTCEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHH--CCCcEEEEE
Confidence            58999995 9999999999998  676655543

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.55  E-value=0.28  Score=31.17  Aligned_cols=32  Identities=19%  Similarity=0.102  Sum_probs=27.7

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +.++|.|| |..|..++..|.+  .|.+|..+++.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~--~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLG--KGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHH--CcCEEEEEECC
Confidence            45778787 9999999999999  89999999874

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.51  E-value=0.3  Score=31.39  Aligned_cols=32  Identities=22%  Similarity=0.218  Sum_probs=27.7

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +.++|.|+ |..|..++..|.+  .|.+|..+|+.
T Consensus        17 k~iLVTG~tGfIGs~lv~~L~~--~g~~V~~~d~~   49 (341)
T d1sb8a_          17 KVWLITGVAGFIGSNLLETLLK--LDQKVVGLDNF   49 (341)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred             CEEEEecCCCHHHHHHHHHHHH--CcCEEEEEECC
Confidence            57888887 8999999999999  89999999863

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.46  E-value=0.16  Score=29.93  Aligned_cols=21  Identities=38%  Similarity=0.583  Sum_probs=19.2

Q ss_pred             CcEEEECC-CHHHHHHHHHHHh
Q psy1704          28 HKVAILGA-GIIGLSTALELQR   48 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~   48 (90)
                      .+|.|+|| |..|-.+|+.|.+
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~   26 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAA   26 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCHHHHHHHHHHHh
Confidence            48999997 9999999999987

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=89.43  E-value=0.21  Score=31.64  Aligned_cols=32  Identities=22%  Similarity=0.370  Sum_probs=27.1

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ++|+|.|+ |..|-.++..|.+  .|..+++++..
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~--~g~~vi~~~~~   35 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQ--RGDVELVLRTR   35 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTT--CTTEEEECCCT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHH--CcCEEEEecCc
Confidence            58999998 8999999999998  78888777653

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=89.10  E-value=0.35  Score=29.69  Aligned_cols=35  Identities=17%  Similarity=0.147  Sum_probs=30.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ....++.|||.|..|..+|..+..  -|.+|..+|+.
T Consensus        41 l~gk~vgIiG~G~IG~~va~~l~~--fg~~V~~~d~~   75 (197)
T d1j4aa1          41 VRDQVVGVVGTGHIGQVFMQIMEG--FGAKVITYDIF   75 (197)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred             ccCCeEEEecccccchhHHHhHhh--hcccccccCcc
Confidence            345799999999999999999987  68999999864

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.08  E-value=0.31  Score=31.17  Aligned_cols=32  Identities=28%  Similarity=0.186  Sum_probs=27.5

Q ss_pred             cE-EEECC-CHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KV-AILGA-GIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v-~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +| +|.|| |..|..+...|.+  .|.+|..+++..
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~--~g~~V~~i~r~~   35 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLE--KGYEVHGIVRRS   35 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--TTCEEEEEECCC
T ss_pred             CEEEEecCCcHHHHHHHHHHHH--CcCEEEEEECCC
Confidence            67 68787 8899999999999  899999998853

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=88.91  E-value=0.56  Score=30.17  Aligned_cols=31  Identities=19%  Similarity=0.223  Sum_probs=26.1

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEE
Q psy1704          26 SNHKVAILGA-GIIGLSTALELQRRFPNCDVTVI   58 (90)
Q Consensus        26 ~~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vi   58 (90)
                      ..++|+|.|+ |..|..++..|.+  .|.+|..+
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~--~G~~V~~~   41 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLE--HGYKVRGT   41 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH--TTCEEEEE
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHH--CcCEEEEE
Confidence            4578999998 8899999999998  78887654

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.90  E-value=0.16  Score=29.93  Aligned_cols=34  Identities=18%  Similarity=0.172  Sum_probs=24.4

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhC-----CCCcEEEEccC
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRF-----PNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~-----~g~~v~vie~~   61 (90)
                      .+|.|||| |..|-.+|+.|.+..     ....+.++|..
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~   43 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT   43 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc
Confidence            48999995 999999999987521     11246667653

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=88.80  E-value=0.35  Score=31.49  Aligned_cols=32  Identities=25%  Similarity=0.171  Sum_probs=26.8

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILG-AGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG-~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +.++|.| +|..|..++..|.+  .|.+|+.+++.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~--~g~~V~~~~r~   34 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLE--KGYEVHGIKRR   34 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--TTCEEEEECC-
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH--CcCEEEEEECC
Confidence            3466888 59999999999999  79999999975

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=88.80  E-value=0.52  Score=28.76  Aligned_cols=35  Identities=20%  Similarity=0.259  Sum_probs=30.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .....+.|||.|..|-.+|..+..  -|.+|..+|+.
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~~--fg~~v~~~d~~   81 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAKA--FGFNVLFYDPY   81 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHT--TTCEEEEECTT
T ss_pred             eeCceEEEeccccccccceeeeec--cccceeeccCc
Confidence            345689999999999999999987  68999999975

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=88.70  E-value=0.3  Score=30.34  Aligned_cols=34  Identities=12%  Similarity=0.149  Sum_probs=26.6

Q ss_pred             CCCcEEEECC-CH--HHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGA-GI--IGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~-G~--~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+.++|.|+ |-  .|..+|..|++  .|.+|.+.+++
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~--~Ga~Vil~~~~   41 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQE--QGAQLVLTGFD   41 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHH--TTCEEEEEECS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH--cCCEEEEEeCC
Confidence            4467889984 32  68899999999  89999888653

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=88.68  E-value=0.38  Score=28.24  Aligned_cols=33  Identities=18%  Similarity=0.284  Sum_probs=26.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCC
Q psy1704          28 HKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~   62 (90)
                      ..|+|+|+|..|+.++..++.  .+ ..|.+++.++
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~--~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKA--AGAARIIGVDINK   63 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCG
T ss_pred             CEEEEECCCCcHHHHHHHHHH--cCCceEEeecCcH
Confidence            468999999999998888887  55 4777777653

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=88.65  E-value=0.35  Score=30.49  Aligned_cols=33  Identities=18%  Similarity=0.163  Sum_probs=27.0

Q ss_pred             CCCcEEEECCC---HHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704          26 SNHKVAILGAG---IIGLSTALELQRRFPNCDVTVIAD   60 (90)
Q Consensus        26 ~~~~v~IiG~G---~~Gl~~A~~l~~~~~g~~v~vie~   60 (90)
                      ..+.++|.|++   -.|..+|..|++  .|.+|++.++
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~--~Ga~Vvi~~~   42 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAA--AGAEILVGTW   42 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHH--TTCEEEEEEE
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHH--CCCEEEEEeC
Confidence            45678899964   379999999999  8999988754

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.64  E-value=0.35  Score=28.96  Aligned_cols=33  Identities=24%  Similarity=0.271  Sum_probs=25.2

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhhCCCC--cEEEEccC
Q psy1704          27 NHKVAILGA-GIIGLSTALELQRRFPNC--DVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~-G~~Gl~~A~~l~~~~~g~--~v~vie~~   61 (90)
                      +++|+|.|| |..|..+...|.+  .+.  +|.++-++
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~--~~~~~~v~~~~r~   37 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILS--EPTLAKVIAPARK   37 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHH--CTTCCEEECCBSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHh--CCCeEEEEEEeCC
Confidence            368999999 9999999999988  565  45444433

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=88.51  E-value=0.38  Score=28.07  Aligned_cols=32  Identities=13%  Similarity=0.226  Sum_probs=24.9

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCC-CcEEEEccC
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPN-CDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g-~~v~vie~~   61 (90)
                      .+++|+|+ |..|+.++..+..  .+ .+|++++.+
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~--~g~~~V~~~~~~   62 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKA--VSGATIIGVDVR   62 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--HTCCEEEEEESS
T ss_pred             CEEEEEeccccceeeeeecccc--cccccccccccc
Confidence            47999995 9999988877776  45 578888764

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.42  E-value=0.49  Score=29.02  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=18.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHH
Q psy1704          26 SNHKVAILGAGIIGLSTALELQ   47 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~   47 (90)
                      ...+|+|||+|-.++=+|..|.
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHH
T ss_pred             cCceEEEECCCchhHhhhhhhc
Confidence            3469999999999999988765

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=88.11  E-value=0.38  Score=30.08  Aligned_cols=35  Identities=14%  Similarity=0.057  Sum_probs=28.3

Q ss_pred             CCCcEEEECC-C--HHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGA-G--IIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~-G--~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+.++|.|+ |  -.|.++|..|.+  .|.+|++.+++.
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~--~Ga~V~i~~r~~   41 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFN--QGATLAFTYLNE   41 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHT--TTCEEEEEESST
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence            3467889985 2  369999999999  899999999763

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=88.01  E-value=0.57  Score=28.22  Aligned_cols=35  Identities=20%  Similarity=0.204  Sum_probs=30.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ....++.|+|.|..|...|..+..  -+.+|..+++.
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~--fg~~v~~~d~~   76 (188)
T d2naca1          42 LEAMHVGTVAAGRIGLAVLRRLAP--FDVHLHYTDRH   76 (188)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGG--GTCEEEEECSS
T ss_pred             ccccceeeccccccchhhhhhhhc--cCceEEEEeec
Confidence            345799999999999999999987  68899999875

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.98  E-value=0.41  Score=30.79  Aligned_cols=30  Identities=33%  Similarity=0.467  Sum_probs=25.6

Q ss_pred             cEEEECC-CHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704          29 KVAILGA-GIIGLSTALELQRRFPNCDVTVIAD   60 (90)
Q Consensus        29 ~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~   60 (90)
                      .|+|.|| |..|..+...|.+  .|.+|+++|+
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~--~g~~V~~~d~   33 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIE--NGYDCVVADN   33 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH--TTCEEEEEEC
T ss_pred             EEEEeCCCcHHHHHHHHHHHH--CcCeEEEEEC
Confidence            4677776 7999999999999  7899999975

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.94  E-value=0.41  Score=29.86  Aligned_cols=35  Identities=26%  Similarity=0.286  Sum_probs=28.6

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGI-IGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +.+.++|.|++- .|..+|..|.+  .|.+|.+.+++.
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~--~Ga~V~~~~r~~   41 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAA--DGHKVAVTHRGS   41 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHH--TTCEEEEEESSS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECCc
Confidence            446778888754 69999999999  899999999864

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=87.63  E-value=0.61  Score=28.09  Aligned_cols=35  Identities=20%  Similarity=0.228  Sum_probs=30.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .....+.|+|.|..|...|..+..  -+.+|..+|+.
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~--fg~~v~~~d~~   76 (188)
T d1sc6a1          42 ARGKKLGIIGYGHIGTQLGILAES--LGMYVYFYDIE   76 (188)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred             ccceEEEEeecccchhhhhhhccc--ccceEeecccc
Confidence            345789999999999999998887  79999999975

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.57  E-value=0.46  Score=29.68  Aligned_cols=33  Identities=21%  Similarity=0.204  Sum_probs=27.0

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAG-IIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G-~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.++|.|++ -.|..+|..|.+  .|.+|++.+++
T Consensus         5 gK~~lITGas~GIG~aia~~l~~--~G~~V~~~~r~   38 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRATLELFAK--EGARLVACDIE   38 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            4567787874 479999999999  89999999875

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.49  E-value=0.44  Score=28.98  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=26.5

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +.++|.|+ +-.|..+|..|.+  .|.+|++.+++.
T Consensus         2 K~alITGas~GIG~aiA~~la~--~Ga~V~i~~~~~   35 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKA--RGYRVVVLDLRR   35 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--HTCEEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECCc
Confidence            35677777 4469999999999  799999998764

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=87.41  E-value=0.5  Score=29.62  Aligned_cols=31  Identities=35%  Similarity=0.479  Sum_probs=25.0

Q ss_pred             cE-EEECCCH-HHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KV-AILGAGI-IGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v-~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +| +|.|++- .|..+|..|.+  .|.+|++.+++
T Consensus         2 KValITGas~GIG~aia~~la~--~Ga~V~~~~r~   34 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVK--DGFAVAIADYN   34 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CEEEEcCCccHHHHHHHHHHHH--CCCEEEEEECC
Confidence            55 5667753 68999999999  89999999875

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=87.32  E-value=0.5  Score=29.79  Aligned_cols=33  Identities=24%  Similarity=0.206  Sum_probs=26.4

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGI-IGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.++|.|++- .|..+|..|.+  .|.+|++.+++
T Consensus         6 gKvalITGas~GIG~aia~~la~--~Ga~V~i~~r~   39 (268)
T d2bgka1           6 DKVAIITGGAGGIGETTAKLFVR--YGAKVVIADIA   39 (268)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHH--CCCEEEEEECC
Confidence            35667777643 68999999999  89999999875

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=87.32  E-value=0.71  Score=29.58  Aligned_cols=33  Identities=24%  Similarity=0.466  Sum_probs=24.4

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIAD   60 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~   60 (90)
                      ++|+|.|| |..|..++..|.++.....|+++|.
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~   36 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK   36 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeC
Confidence            47999995 9999999999988322334666664

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.29  E-value=0.48  Score=29.27  Aligned_cols=23  Identities=35%  Similarity=0.394  Sum_probs=20.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHh
Q psy1704          26 SNHKVAILGAGIIGLSTALELQR   48 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~   48 (90)
                      ...+|+|||+|-.++=+|..|.+
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r   60 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLT   60 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHS
T ss_pred             cCceEEEECCchhHHHHHHHHhc
Confidence            35799999999999999998876

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.28  E-value=0.52  Score=29.41  Aligned_cols=34  Identities=26%  Similarity=0.441  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGI-IGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+.++|.|++- .|..+|..|.+  .|.+|.+.+++
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~--~G~~V~~~~r~   40 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHA--TGARVVAVSRT   40 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH--cCCEEEEEECC
Confidence            446788888854 68999999999  89999999875

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=87.27  E-value=0.48  Score=30.09  Aligned_cols=33  Identities=18%  Similarity=0.236  Sum_probs=27.3

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAG-IIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G-~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.++|.|++ -.|..+|..|.+  .|.+|.+.+++
T Consensus         5 gK~alITGas~GIG~aia~~la~--~Ga~V~i~~r~   38 (276)
T d1bdba_           5 GEAVLITGGASGLGRALVDRFVA--EGAKVAVLDKS   38 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            4567888874 469999999999  89999999875

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=87.18  E-value=0.54  Score=30.62  Aligned_cols=31  Identities=29%  Similarity=0.465  Sum_probs=25.8

Q ss_pred             cEEEECC-CHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704          29 KVAILGA-GIIGLSTALELQRRFPNCDVTVIAD   60 (90)
Q Consensus        29 ~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~   60 (90)
                      +|+|.|| |..|..++..|.++ .+.+|+++|+
T Consensus         4 KVLITG~tGfIGs~lv~~LL~~-~~~~V~~~D~   35 (383)
T d1gy8a_           4 RVLVCGGAGYIGSHFVRALLRD-TNHSVVIVDS   35 (383)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHH-CCCEEEEEEC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHh-CCCEEEEEec
Confidence            7999887 88999999888643 6889999985

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=87.14  E-value=0.34  Score=30.50  Aligned_cols=34  Identities=24%  Similarity=0.361  Sum_probs=28.0

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAGI-IGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+.++|.|++- .|..+|..|.+  .|.+|++.+++.
T Consensus         9 gK~alITGas~GIG~aia~~la~--~Ga~V~i~~r~~   43 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAA--AGANVAVIYRSA   43 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHH--TTEEEEEEESSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECCH
Confidence            45677888754 69999999999  899999998864

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.00  E-value=0.62  Score=30.10  Aligned_cols=35  Identities=26%  Similarity=0.186  Sum_probs=27.2

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          26 SNHKVAILGAGI-IGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        26 ~~~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ..+.++|.|++- .|..+|..|++  .|.+|++.+.+.
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~--~Ga~Vvi~d~~~   41 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAE--RGALVVVNDLGG   41 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH--TTCEEEEECCCB
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH--cCCEEEEEeCCc
Confidence            345667777754 58899999999  899999988754

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=86.91  E-value=0.51  Score=30.09  Aligned_cols=31  Identities=32%  Similarity=0.413  Sum_probs=25.7

Q ss_pred             cEEEECC-CHHHHHHHHHHHhhCCC-CcEEEEccC
Q psy1704          29 KVAILGA-GIIGLSTALELQRRFPN-CDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~-G~~Gl~~A~~l~~~~~g-~~v~vie~~   61 (90)
                      +|+|.|+ |..|..++..|.+  .+ .+|..+|+.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~--~g~~~V~~ld~~   34 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLR--EDHYEVYGLDIG   34 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHH--STTCEEEEEESC
T ss_pred             EEEEECCCcHHHHHHHHHHHH--CCCCEEEEEeCC
Confidence            6899998 8899999999877  56 578888764

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.90  E-value=0.61  Score=28.63  Aligned_cols=32  Identities=41%  Similarity=0.474  Sum_probs=28.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD   60 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~   60 (90)
                      .++|+|||-|..|.+=|..|+.  .|.+|+|=-+
T Consensus        16 ~k~IaViGYGsQG~AhAlNLrD--SG~~V~VGLr   47 (182)
T d1np3a2          16 GKKVAIIGYGSQGHAHACNLKD--SGVDVTVGLR   47 (182)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHH--TTCCEEEECC
T ss_pred             CCEEEEEeeCcHhHHHHhhhhh--cCCCEEEEcC
Confidence            4689999999999999999999  8999887554

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=86.86  E-value=0.63  Score=27.98  Aligned_cols=34  Identities=18%  Similarity=0.257  Sum_probs=24.6

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhhC-----CCCcEEEEcc
Q psy1704          27 NHKVAILGA-GIIGLSTALELQRRF-----PNCDVTVIAD   60 (90)
Q Consensus        27 ~~~v~IiG~-G~~Gl~~A~~l~~~~-----~g~~v~vie~   60 (90)
                      ..+|.|+|| |..|-.+++.|.+..     ....+.++|.
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di   63 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGS   63 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECC
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecC
Confidence            358999996 999999999998621     1125666664

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.65  E-value=0.45  Score=29.09  Aligned_cols=34  Identities=35%  Similarity=0.413  Sum_probs=27.6

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhhCCC--CcEEEEccCC
Q psy1704          27 NHKVAILGA-GIIGLSTALELQRRFPN--CDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~-G~~Gl~~A~~l~~~~~g--~~v~vie~~~   62 (90)
                      ..+|+|.|| |..|..+...|.+  .+  .+|+++.+++
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~--~g~~~~v~~~~R~~   50 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILE--QGLFSKVTLIGRRK   50 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHH--HTCCSEEEEEESSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHh--CCCCCEEEEEecCh
Confidence            357999998 9999999999987  44  3799998764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.53  E-value=0.8  Score=26.72  Aligned_cols=33  Identities=21%  Similarity=0.239  Sum_probs=24.7

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+|+|.|+ |..|+.+...++.  .|.+|+++...
T Consensus        29 g~~VlV~Ga~G~vG~~aiq~a~~--~G~~vi~~~~~   62 (174)
T d1yb5a2          29 GESVLVHGASGGVGLAACQIARA--YGLKILGTAGT   62 (174)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCEEEEEeccccccccccccccc--cCccccccccc
Confidence            347999996 9999877766666  68888777643

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=86.52  E-value=0.37  Score=30.31  Aligned_cols=33  Identities=21%  Similarity=0.200  Sum_probs=27.1

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAG-IIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G-~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.++|.|++ -.|..+|..|.+  .|.+|.+.+++
T Consensus         5 gK~alVTGas~GIG~aia~~la~--~Ga~V~~~~r~   38 (256)
T d1k2wa_           5 GKTALITGSARGIGRAFAEAYVR--EGARVAIADIN   38 (256)
T ss_dssp             TEEEEEETCSSHHHHHHHHHHHH--TTEEEEEEESC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            4567888884 468999999999  89999999875

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=86.30  E-value=0.59  Score=27.59  Aligned_cols=35  Identities=26%  Similarity=0.386  Sum_probs=22.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEE-ccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI-ADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vi-e~~   61 (90)
                      ..++.|||+|..|-..-..+.+.++..++..+ +++
T Consensus         4 kirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~   39 (157)
T d1nvmb1           4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGID   39 (157)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSC
T ss_pred             CcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecc
Confidence            35899999998886544444444455565544 443

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=86.15  E-value=0.57  Score=28.89  Aligned_cols=29  Identities=24%  Similarity=0.502  Sum_probs=23.8

Q ss_pred             EEEECC-CHHHHHHHHHHHhhCCCC-cEEEEcc
Q psy1704          30 VAILGA-GIIGLSTALELQRRFPNC-DVTVIAD   60 (90)
Q Consensus        30 v~IiG~-G~~Gl~~A~~l~~~~~g~-~v~vie~   60 (90)
                      |+|.|| |..|..++..|.+  .|. +|+++|.
T Consensus         2 ILITGgsGfIGs~lv~~L~~--~g~~~V~~~d~   32 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALND--KGITDILVVDN   32 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHT--TTCCCEEEEEC
T ss_pred             EEEecCccHHHHHHHHHHHh--CCCCeEEEEEC
Confidence            677776 8899999999998  675 7999873

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.79  E-value=0.54  Score=29.24  Aligned_cols=34  Identities=21%  Similarity=0.407  Sum_probs=26.8

Q ss_pred             CCCcEEEECCC---HHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAG---IIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G---~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+.++|.|+.   -.|..+|..|.+  .|.+|++.++.
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~--~Ga~V~i~~~~   43 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKE--AGAEVALSYQA   43 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHH--CCCEEEEEeCc
Confidence            34578888853   269999999999  89999887765

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.72  E-value=0.56  Score=29.00  Aligned_cols=33  Identities=30%  Similarity=0.359  Sum_probs=27.5

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAG-IIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G-~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.++|.|++ -.|..+|..|.+  .|.+|.+.+++
T Consensus         4 gK~~lVTGas~GIG~aia~~l~~--~Ga~V~~~~r~   37 (234)
T d1o5ia_           4 DKGVLVLAASRGIGRAVADVLSQ--EGAEVTICARN   37 (234)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHH--CCCEEEEEECC
Confidence            4578899874 369999999999  89999999875

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=85.65  E-value=0.54  Score=29.03  Aligned_cols=33  Identities=12%  Similarity=0.316  Sum_probs=26.1

Q ss_pred             CCcEEEECCCH---HHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGI---IGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~---~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.++|.|++-   .|..+|..|.+  .|.+|.+.+++
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~--~G~~V~i~~~~   40 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHR--EGAELAFTYQN   40 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHH--cCCEEEEEeCC
Confidence            45778887642   57889999999  89999988775

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=85.65  E-value=0.34  Score=27.16  Aligned_cols=30  Identities=30%  Similarity=0.276  Sum_probs=24.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .++|+|.|..|..++..|..    ..|.++|.++
T Consensus         2 HivI~G~g~~g~~l~~~L~~----~~i~vi~~d~   31 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELRG----SEVFVLAEDE   31 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSCG----GGEEEEESCT
T ss_pred             EEEEECCCHHHHHHHHHHcC----CCCEEEEcch
Confidence            58999999999998887744    4678888764

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.56  E-value=0.58  Score=29.35  Aligned_cols=33  Identities=21%  Similarity=0.413  Sum_probs=27.1

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGI-IGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.++|.|++- .|..+|..|.+  .|.+|++.+++
T Consensus         5 gK~~lITGas~GIG~aia~~la~--~Ga~V~i~~r~   38 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAE--AGCSVVVASRN   38 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            35678888854 68999999999  89999999865

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=85.50  E-value=0.54  Score=28.89  Aligned_cols=31  Identities=23%  Similarity=0.199  Sum_probs=24.9

Q ss_pred             EEEECC-CHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          30 VAILGA-GIIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        30 v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      ++|.|+ +-.|..+|..|.+  .|.+|.+++++.
T Consensus         4 vlITGas~GIG~aiA~~la~--~Ga~V~~~~~~~   35 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEA--AGHQIVGIDIRD   35 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHH--TTCEEEEEESSS
T ss_pred             EEEeCCCCHHHHHHHHHHHH--CCCEEEEEECCh
Confidence            567776 3479999999999  899999998753

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.49  E-value=0.78  Score=28.22  Aligned_cols=33  Identities=21%  Similarity=0.219  Sum_probs=26.7

Q ss_pred             CcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGI-IGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +.++|.|++- .|..+|..|++  .|.+|.+.+++.
T Consensus         6 KvalITGas~GIG~aia~~la~--~G~~V~~~~r~~   39 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVG--QGASAVLLDLPN   39 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--TTCEEEEEECTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEeCCh
Confidence            4567888754 68999999999  899999998764

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=85.45  E-value=0.69  Score=26.85  Aligned_cols=33  Identities=15%  Similarity=0.278  Sum_probs=24.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~   61 (90)
                      ...|+|.|+|..|+.+...++.  .|. .|.+.+.+
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~--~G~~~vi~~~~~   62 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKV--AGASRIIGVDIN   62 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--HTCSEEEEECSC
T ss_pred             CCEEEEecchhHHHHHHHHHHH--HhcCceEEEccc
Confidence            3478999999999888877776  564 56666654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.43  E-value=0.43  Score=30.06  Aligned_cols=34  Identities=32%  Similarity=0.400  Sum_probs=28.0

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGI-IGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+.++|.||.- .|..+|..|++  .|.+|.+.+++
T Consensus        13 ~GK~alITGassGIG~aiA~~la~--~G~~Vil~~r~   47 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAK--MGAHVVVTARS   47 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH--CCCEEEEEECC
Confidence            446788888854 69999999999  89999999875

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.40  E-value=0.7  Score=28.76  Aligned_cols=33  Identities=24%  Similarity=0.387  Sum_probs=27.0

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGI-IGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.++|.|++- .|..+|..|.+  .|.+|++.+++
T Consensus         5 GK~alITGas~GIG~aia~~la~--~Ga~V~~~~r~   38 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHA--SGAKVVAVTRT   38 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHH--CCCEEEEEECC
Confidence            35678888753 68999999999  89999999875

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=85.14  E-value=0.83  Score=28.69  Aligned_cols=33  Identities=18%  Similarity=0.194  Sum_probs=27.5

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAG-IIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G-~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.++|.|+. -.|..+|..|++  .|.+|.+.+++
T Consensus         6 gK~alITGas~GIG~aia~~la~--~G~~V~i~~r~   39 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAG--LGARVYTCSRN   39 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            4578899864 468999999999  89999999875

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=84.93  E-value=0.64  Score=29.21  Aligned_cols=33  Identities=30%  Similarity=0.457  Sum_probs=26.9

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGI-IGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.++|.|++- .|..+|..|.+  .|.+|.+.+++
T Consensus         5 gK~alITGas~GIG~aia~~la~--~Ga~V~~~~r~   38 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAE--EGTAIALLDMN   38 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            35677888754 68999999999  89999999875

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.87  E-value=0.25  Score=31.88  Aligned_cols=33  Identities=18%  Similarity=0.252  Sum_probs=21.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+|+|+|+|..+..  ..+.+. +..+|+++|-+
T Consensus        72 ~p~~vLiiG~G~G~~~--~~~l~~-~~~~v~~VEiD  104 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTV--REVLQH-DVDEVIMVEID  104 (276)
T ss_dssp             CCCEEEEEECTTSHHH--HHHTTS-CCSEEEEEESC
T ss_pred             CCceEEEecCCchHHH--HHHHHh-CCceEEEecCC
Confidence            3469999999965433  333332 45689999865

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=84.79  E-value=0.67  Score=29.19  Aligned_cols=33  Identities=18%  Similarity=0.196  Sum_probs=27.3

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGI-IGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.++|.|++- .|..+|..|.+  .|.+|++.+++
T Consensus         5 gK~alVTGas~GIG~aia~~la~--~Ga~V~~~~r~   38 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVA--AGARVVLADVL   38 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            45678888864 68999999999  89999999875

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.67  E-value=0.66  Score=29.13  Aligned_cols=33  Identities=24%  Similarity=0.218  Sum_probs=27.0

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGI-IGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.++|.|++- .|..+|..|.+  .|.+|.+.+++
T Consensus        10 ~Kv~lITGas~GIG~aiA~~la~--~G~~Vv~~~r~   43 (257)
T d1xg5a_          10 DRLALVTGASGGIGAAVARALVQ--QGLKVVGCART   43 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            35677888754 68999999999  89999999875

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.63  E-value=0.73  Score=27.04  Aligned_cols=32  Identities=22%  Similarity=0.265  Sum_probs=24.4

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..|+|.|+ |..|+.+...++.  .|.+|..++..
T Consensus        29 ~~VlI~ga~G~vG~~aiqlak~--~G~~vi~~~~~   61 (171)
T d1iz0a2          29 EKVLVQAAAGALGTAAVQVARA--MGLRVLAAASR   61 (171)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CEEEEEeccccchhhhhhhhcc--ccccccccccc
Confidence            46888896 9999887776666  68888777754

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=84.48  E-value=0.69  Score=29.09  Aligned_cols=32  Identities=25%  Similarity=0.421  Sum_probs=26.3

Q ss_pred             CcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGI-IGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +.++|.|++- .|..+|..|.+  .|.+|.+.+++
T Consensus         5 K~alITGas~GIG~aia~~la~--~Ga~V~i~~r~   37 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAA--EGAKLSLVDVS   37 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            4567778754 68999999999  89999999875

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=84.48  E-value=0.58  Score=29.33  Aligned_cols=32  Identities=22%  Similarity=0.281  Sum_probs=25.0

Q ss_pred             CcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGI-IGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +.++|.|++- .|..+|..|.+  .|.+|++.+++
T Consensus         5 K~alITGas~GIG~aiA~~la~--~Ga~V~~~~r~   37 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAA--QGADIVLNGFG   37 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH--TTCEEEEECCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            4456666643 68999999999  89999999875

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=84.46  E-value=0.44  Score=27.61  Aligned_cols=30  Identities=33%  Similarity=0.397  Sum_probs=24.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +|.+||-|..|...|..|.+  .+..+ ++.+.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~--~g~~~-~~~~~   31 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLAR--RFPTL-VWNRT   31 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHT--TSCEE-EECSS
T ss_pred             eEEEEeHHHHHHHHHHHHHh--CCCEE-EEeCC
Confidence            68999999999999999998  67654 55543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.31  E-value=0.92  Score=28.46  Aligned_cols=34  Identities=32%  Similarity=0.407  Sum_probs=26.4

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+.++|.|+ +-.|..+|..|.+  .|.+|++.+.+
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~--~Ga~Vvi~~~~   51 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGR--RGCKVIVNYAN   51 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH--cCCEEEEEeCC
Confidence            3456777776 3468899999999  89999998764

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.54  E-value=1.1  Score=26.81  Aligned_cols=35  Identities=20%  Similarity=0.157  Sum_probs=29.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .....+.|+|.|..|...|..+..  -+.+|..+++.
T Consensus        42 l~~k~vgiiG~G~IG~~va~~~~~--fg~~v~~~d~~   76 (184)
T d1ygya1          42 IFGKTVGVVGLGRIGQLVAQRIAA--FGAYVVAYDPY   76 (184)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHT--TTCEEEEECTT
T ss_pred             ccceeeeeccccchhHHHHHHhhh--ccceEEeecCC
Confidence            345789999999999999998877  68899999864

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=83.45  E-value=0.78  Score=28.79  Aligned_cols=33  Identities=18%  Similarity=0.214  Sum_probs=27.1

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGI-IGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.++|.|++- .|..+|..|.+  .|.+|++.+++
T Consensus         8 GK~alITGas~GIG~aia~~la~--~Ga~V~~~~r~   41 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELAS--LGASVYTCSRN   41 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            45677888853 68999999999  89999999875

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.45  E-value=0.95  Score=28.12  Aligned_cols=32  Identities=22%  Similarity=0.248  Sum_probs=25.3

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +.++|.|+ +-.|..+|..|.+  .|.+|.+.+++
T Consensus         7 K~alITGas~GIG~aia~~la~--~G~~Vi~~~r~   39 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAR--EGAKVIATDIN   39 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH--cCCEEEEEeCC
Confidence            45566665 4469999999999  89999999875

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=83.42  E-value=0.92  Score=28.32  Aligned_cols=34  Identities=21%  Similarity=0.187  Sum_probs=27.0

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAG-IIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G-~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+.++|.|++ -.|..+|..|.+  .|.+|.+.+++.
T Consensus         5 GK~alITGas~GIG~aia~~la~--~G~~V~~~~~~~   39 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRAIAQAFAR--EGALVALCDLRP   39 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESST
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECCH
Confidence            3467777864 468999999999  899999998764

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.39  E-value=0.43  Score=28.17  Aligned_cols=33  Identities=12%  Similarity=0.071  Sum_probs=22.1

Q ss_pred             cEEEECCCHHHHHHHHHH-Hhh---CCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLSTALEL-QRR---FPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l-~~~---~~g~~v~vie~~   61 (90)
                      +|.|||+|..|...++.. .+.   .+..++.++|.+
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did   38 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDID   38 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecC
Confidence            699999997776666532 221   123579999975

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=83.37  E-value=0.76  Score=28.79  Aligned_cols=33  Identities=15%  Similarity=0.139  Sum_probs=25.9

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAG-IIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G-~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.++|.|++ -.|..+|..|.+  .|.+|.+.+++
T Consensus         6 gK~alITGas~GIG~aia~~la~--~Ga~V~~~~~~   39 (253)
T d1hxha_           6 GKVALVTGGASGVGLEVVKLLLG--EGAKVAFSDIN   39 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            3456676764 368899999999  89999999875

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.10  E-value=0.85  Score=28.44  Aligned_cols=32  Identities=22%  Similarity=0.176  Sum_probs=25.6

Q ss_pred             CcEEEECCC-HHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAG-IIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G-~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +.++|.|+. -.|..+|..|.+  .|.+|.+.+++
T Consensus         4 KvalITGas~GIG~aia~~la~--~Ga~V~i~~r~   36 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLL--KGAKVALVDWN   36 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            356677774 369999999999  89999999875

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.08  E-value=1  Score=28.10  Aligned_cols=33  Identities=30%  Similarity=0.307  Sum_probs=26.4

Q ss_pred             CcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          28 HKVAILGAGI-IGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        28 ~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      +-++|.|++- .|..+|..+++  .|.+|.+.+++.
T Consensus         8 kv~lITGas~GIG~~ia~~la~--~G~~V~l~~r~~   41 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAK--LKSKLVLWDINK   41 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH--CCCEEEEEECCH
Confidence            4556667755 68999999999  899999998763

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.07  E-value=0.85  Score=28.58  Aligned_cols=33  Identities=18%  Similarity=0.293  Sum_probs=27.0

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAG-IIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G-~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.++|.|++ -.|..+|..|.+  .|.+|.+.+++
T Consensus         6 GK~alITGas~GIG~aia~~la~--~Ga~V~i~~r~   39 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVN--SGARVVICDKD   39 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            3567888874 468999999999  89999999875

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=82.97  E-value=0.6  Score=29.56  Aligned_cols=32  Identities=28%  Similarity=0.410  Sum_probs=25.8

Q ss_pred             CcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGI-IGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +.++|.|++- .|..+|..|.+  .|.+|++.+++
T Consensus         5 K~alITGas~GIG~aia~~la~--~Ga~V~~~~r~   37 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAK--EGAQVTITGRN   37 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH--CCCEEEEEECC
Confidence            4567777743 68899999999  89999999865

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=82.97  E-value=1.1  Score=27.85  Aligned_cols=34  Identities=18%  Similarity=0.166  Sum_probs=27.0

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704          27 NHKVAILGAG-IIGLSTALELQRRFPNCDVTVIADKF   62 (90)
Q Consensus        27 ~~~v~IiG~G-~~Gl~~A~~l~~~~~g~~v~vie~~~   62 (90)
                      .+.++|.|++ -.|..+|..|.+  .|.+|.+.+++.
T Consensus         5 gKvalVTGas~GIG~aia~~la~--~Ga~V~~~~~~~   39 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFAV--EGADIAIADLVP   39 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECCc
Confidence            3456777874 368999999999  899999998753

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=82.95  E-value=1  Score=28.04  Aligned_cols=33  Identities=30%  Similarity=0.342  Sum_probs=26.0

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAG-IIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G-~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+-++|.|++ -.|..+|..|.+  .|.+|.+.+++
T Consensus        10 nKvalITGas~GIG~a~a~~la~--~Ga~V~~~~r~   43 (251)
T d2c07a1          10 NKVALVTGAGRGIGREIAKMLAK--SVSHVICISRT   43 (251)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTT--TSSEEEEEESS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH--cCCEEEEEECC
Confidence            3456677874 468999999998  89999999875

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=82.83  E-value=1.1  Score=29.44  Aligned_cols=36  Identities=25%  Similarity=0.252  Sum_probs=26.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhC--C-------CCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRF--P-------NCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~--~-------g~~v~vie~~   61 (90)
                      ...++++.|+|.+|+.+|..+....  .       ..++.++|+.
T Consensus        24 ~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~k   68 (298)
T d1gq2a1          24 SDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSK   68 (298)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETT
T ss_pred             HHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCC
Confidence            3468999999999999888775200  1       2479999975

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.72  E-value=0.64  Score=29.26  Aligned_cols=33  Identities=18%  Similarity=0.184  Sum_probs=26.5

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGI-IGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.++|.|++- .|..+|..|.+  .|.+|.+.+++
T Consensus         8 gK~alVTGas~GIG~aiA~~la~--~Ga~V~~~~r~   41 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAG--FGAVIHTCARN   41 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            35677777754 68899999999  89999999875

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=82.67  E-value=0.63  Score=29.39  Aligned_cols=33  Identities=30%  Similarity=0.451  Sum_probs=26.3

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGI-IGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.++|.|++- .|..+|..|.+  .|.+|.+.+++
T Consensus         5 gK~alVTGas~GIG~aia~~la~--~Ga~V~l~~r~   38 (272)
T d1xkqa_           5 NKTVIITGSSNGIGRTTAILFAQ--EGANVTITGRS   38 (272)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCEEEEeCcCcHHHHHHHHHHHH--CCCEEEEEECC
Confidence            35677777743 68999999999  89999999865

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=82.65  E-value=1.7  Score=26.27  Aligned_cols=34  Identities=26%  Similarity=0.353  Sum_probs=29.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ....+.|||.|..|...|..+..  -|.+|..++..
T Consensus        46 ~g~tvgIiG~G~IG~~va~~l~~--fg~~v~~~d~~   79 (191)
T d1gdha1          46 DNKTLGIYGFGSIGQALAKRAQG--FDMDIDYFDTH   79 (191)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHT--TTCEEEEECSS
T ss_pred             cccceEEeecccchHHHHHHHHh--hcccccccccc
Confidence            45789999999999999988877  68899999864

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=82.52  E-value=0.8  Score=26.59  Aligned_cols=32  Identities=22%  Similarity=0.462  Sum_probs=21.5

Q ss_pred             cEEEECCCHHHHHH-HHHHHhhCCCCcEEEEccC
Q psy1704          29 KVAILGAGIIGLST-ALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~-A~~l~~~~~g~~v~vie~~   61 (90)
                      ++.|||+|..|-.. ...+.+ .++..+.++|++
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~-~~~~~~~~~d~~   35 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQ-WPDIELVLCTRN   35 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTT-STTEEEEEECSC
T ss_pred             EEEEEcCCHHHHHHHHHHHHh-CCCcEEEEEECC
Confidence            79999999877543 333433 256677788765

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.34  E-value=0.95  Score=28.25  Aligned_cols=33  Identities=12%  Similarity=0.047  Sum_probs=26.4

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAG-IIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G-~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.++|.|++ -.|..+|..|.+  .|.+|.+.+++
T Consensus         6 gK~alITGas~GIG~aia~~la~--~G~~V~~~~r~   39 (244)
T d1nffa_           6 GKVALVSGGARGMGASHVRAMVA--EGAKVVFGDIL   39 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            3456777874 368999999999  89999999875

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=82.26  E-value=0.31  Score=32.04  Aligned_cols=34  Identities=15%  Similarity=0.128  Sum_probs=22.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+|+|||+|..++  +..+.+..+..+|+++|-+
T Consensus        77 ~pk~VLiiG~G~G~~--~~~ll~~~~~~~v~~VEiD  110 (312)
T d1uira_          77 EPKRVLIVGGGEGAT--LREVLKHPTVEKAVMVDID  110 (312)
T ss_dssp             CCCEEEEEECTTSHH--HHHHTTSTTCCEEEEEESC
T ss_pred             CcceEEEeCCCchHH--HHHHHhcCCcceEEEecCC
Confidence            346899999996543  3334432245689999865

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=82.22  E-value=1.1  Score=23.97  Aligned_cols=34  Identities=29%  Similarity=0.239  Sum_probs=27.0

Q ss_pred             CcEEEECCCHHHHH-HHHHHHhhCCCCcEEEEccCCC
Q psy1704          28 HKVAILGAGIIGLS-TALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        28 ~~v~IiG~G~~Gl~-~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .+|-+||-|-+|++ +|..|.+  .|.+|+-.|..+.
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~--~G~~VsGSD~~~~   36 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFS--NGNDVYGSNIEET   36 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--TTCEEEEECSSCC
T ss_pred             cEEEEEeECHHHHHHHHHHHHh--CCCeEEEEeCCCC
Confidence            37888998888875 4777777  8999999997643

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.21  E-value=0.38  Score=31.61  Aligned_cols=36  Identities=25%  Similarity=0.286  Sum_probs=26.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhC--CC-------CcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRF--PN-------CDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~--~g-------~~v~vie~~   61 (90)
                      ...++++.|+|.+|+.+|..+....  .|       .++.++|+.
T Consensus        24 ~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~   68 (294)
T d1pj3a1          24 SEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKY   68 (294)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETT
T ss_pred             HHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCC
Confidence            3458999999999999888764310  23       259999985

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.19  E-value=0.93  Score=29.11  Aligned_cols=34  Identities=21%  Similarity=0.312  Sum_probs=27.3

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGI-IGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+.++|.|++- .|..+|..|.+  .|.+|++.+++
T Consensus        11 ~gKvalITGas~GIG~aia~~la~--~Ga~Vvi~~r~   45 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLE--LGSNVVIASRK   45 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            445677888754 68999999999  89999999875

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.18  E-value=2.4  Score=24.28  Aligned_cols=33  Identities=33%  Similarity=0.526  Sum_probs=25.8

Q ss_pred             CcEEEECC-CHHHHHHHHHHHhh-CCCCcEEEEcc
Q psy1704          28 HKVAILGA-GIIGLSTALELQRR-FPNCDVTVIAD   60 (90)
Q Consensus        28 ~~v~IiG~-G~~Gl~~A~~l~~~-~~g~~v~vie~   60 (90)
                      .+|.|||+ |.+|.....-|.++ ++..++..+-.
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s   37 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLAS   37 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEee
Confidence            47999999 99999999888753 45667777754

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=82.06  E-value=0.81  Score=26.86  Aligned_cols=34  Identities=29%  Similarity=0.573  Sum_probs=24.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEE-EEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVT-VIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~-vie~~   61 (90)
                      +.++.|||.|..|...+..+.+. ++.+++ |++++
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~-~~~elvav~~~~   37 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQ-PDMDLVGIFSRR   37 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTC-SSEEEEEEEESS
T ss_pred             cceEEEECChHHHHHHHHHHHhC-CCcEEEEEEecc
Confidence            35899999999998777777652 456544 55554

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=81.93  E-value=1.5  Score=27.38  Aligned_cols=33  Identities=39%  Similarity=0.415  Sum_probs=26.3

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGI-IGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.++|.|+.- .|..+|..|.+  .|.+|+++.+.
T Consensus         5 gK~vlITGgs~GIG~~~A~~la~--~G~~vii~~r~   38 (254)
T d1sbya1           5 NKNVIFVAALGGIGLDTSRELVK--RNLKNFVILDR   38 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH--TCCSEEEEEES
T ss_pred             CCEEEEecCCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            45678888853 69999999999  89998888554

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.81  E-value=1.3  Score=23.99  Aligned_cols=28  Identities=21%  Similarity=0.331  Sum_probs=22.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCcEEEE
Q psy1704          29 KVAILGAGIIGLSTALELQRRFPNCDVTVI   58 (90)
Q Consensus        29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vi   58 (90)
                      +|+|||+|.--=+.++.|.+  ...++.++
T Consensus         2 kVLviGsGgREHAia~~l~~--s~~~v~~~   29 (90)
T d1vkza2           2 RVHILGSGGREHAIGWAFAK--QGYEVHFY   29 (90)
T ss_dssp             EEEEEECSHHHHHHHHHHHH--TTCEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHhc--CCCeEEEe
Confidence            79999999777778889988  45666665

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=81.78  E-value=1.2  Score=27.68  Aligned_cols=31  Identities=35%  Similarity=0.342  Sum_probs=24.6

Q ss_pred             cE-EEECCC-HHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          29 KV-AILGAG-IIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        29 ~v-~IiG~G-~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +| +|.|+. -.|..+|..|.+  .|.+|.+.+++
T Consensus         3 KValITGas~GIG~aia~~la~--~Ga~V~i~~r~   35 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGK--EGLRVFVCARG   35 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            45 566764 369999999999  89999999875

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=81.61  E-value=2.3  Score=26.63  Aligned_cols=33  Identities=33%  Similarity=0.437  Sum_probs=28.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD   60 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~   60 (90)
                      ...+++|-|-|-+|..+|..|.+  .|.+|+-+..
T Consensus        30 ~g~~v~IqGfGnVG~~~a~~L~~--~Gakvv~vsD   62 (242)
T d1v9la1          30 EGKTVAIQGMGNVGRWTAYWLEK--MGAKVIAVSD   62 (242)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHT--TTCEEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--cCCeEEEeec
Confidence            45699999999999999999999  8988765543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=81.35  E-value=0.82  Score=28.45  Aligned_cols=32  Identities=25%  Similarity=0.207  Sum_probs=25.3

Q ss_pred             CcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAGI-IGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +.++|.|++- .|..+|..|.+  .|.+|++.+++
T Consensus         5 K~alITGas~GIG~a~a~~l~~--~G~~Vv~~~r~   37 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAA--RGAKVIGTATS   37 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH--cCCEEEEEeCC
Confidence            4556667643 68999999999  89999999875

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.15  E-value=0.85  Score=28.58  Aligned_cols=34  Identities=26%  Similarity=0.296  Sum_probs=26.5

Q ss_pred             CCCcEEEECCC-HHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAG-IIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G-~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+.++|.|++ -.|..+|..|.+  .|.+|++.+++
T Consensus        10 ~gK~alITGas~GIG~aia~~la~--~Ga~V~~~~r~   44 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFAT--AGASVVVSDIN   44 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHT--TTCEEEEEESC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH--CCCEEEEEECC
Confidence            34566777764 368999999999  89999999865

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=81.02  E-value=2.1  Score=26.77  Aligned_cols=34  Identities=15%  Similarity=0.218  Sum_probs=30.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ...+++|-|-|-+|..+|..|.+  .|.++++.|.+
T Consensus        38 ~g~~v~IqG~GnVG~~~a~~L~~--~Gakvv~~d~~   71 (230)
T d1leha1          38 EGLAVSVQGLGNVAKALCKKLNT--EGAKLVVTDVN   71 (230)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEeeccc
Confidence            45789999999999999999999  89999988764

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=81.02  E-value=0.8  Score=28.70  Aligned_cols=32  Identities=28%  Similarity=0.361  Sum_probs=24.9

Q ss_pred             CcEEEECCC-HHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          28 HKVAILGAG-IIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        28 ~~v~IiG~G-~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      +.++|.|++ -.|..+|..|.+  .|.+|.+.+++
T Consensus         6 KvalVTGas~GIG~aia~~la~--~Ga~V~~~~r~   38 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAR--EGAKVTITGRH   38 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CEEEEeCcCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            345566663 468999999999  89999999875

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=80.77  E-value=0.4  Score=30.88  Aligned_cols=33  Identities=18%  Similarity=0.140  Sum_probs=20.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      ..+|+|||+|-.+ .+...++. .+..+|+++|-+
T Consensus        76 p~~vLiiGgG~G~-~~~~~l~~-~~~~~i~~VEID  108 (274)
T d1iy9a_          76 PEHVLVVGGGDGG-VIREILKH-PSVKKATLVDID  108 (274)
T ss_dssp             CCEEEEESCTTCH-HHHHHTTC-TTCSEEEEEESC
T ss_pred             cceEEecCCCCcH-HHHHHHhc-CCcceEEEecCC
Confidence            3689999999644 33333332 134589998865

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=80.65  E-value=1.1  Score=27.79  Aligned_cols=33  Identities=27%  Similarity=0.299  Sum_probs=23.1

Q ss_pred             cEEEECCCHHH-----HHHHHHHHhhCCCCcEEEEccCCC
Q psy1704          29 KVAILGAGIIG-----LSTALELQRRFPNCDVTVIADKFN   63 (90)
Q Consensus        29 ~v~IiG~G~~G-----l~~A~~l~~~~~g~~v~vie~~~~   63 (90)
                      .|+|.|=|-+|     ..+|+.|++  .|.+|.++|-++.
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~--~G~rVllID~D~q   40 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHA--MGKTIMVVGCDPK   40 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHT--TTCCEEEEEECTT
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHh--CCCcEEEEecCCC
Confidence            57788834334     335667777  7999999998754

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=80.47  E-value=0.54  Score=31.08  Aligned_cols=36  Identities=17%  Similarity=0.166  Sum_probs=26.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhh--CCC-------CcEEEEccC
Q psy1704          26 SNHKVAILGAGIIGLSTALELQRR--FPN-------CDVTVIADK   61 (90)
Q Consensus        26 ~~~~v~IiG~G~~Gl~~A~~l~~~--~~g-------~~v~vie~~   61 (90)
                      ...+++|.|+|.+|+.+|..|.+.  ..|       .++.++|+.
T Consensus        24 ~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~   68 (308)
T d1o0sa1          24 SQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDID   68 (308)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETT
T ss_pred             HHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCC
Confidence            345899999999999988877531  022       259999975

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=80.09  E-value=1.3  Score=27.45  Aligned_cols=33  Identities=15%  Similarity=0.280  Sum_probs=26.9

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccC
Q psy1704          27 NHKVAILGAGI-IGLSTALELQRRFPNCDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~   61 (90)
                      .+.++|.|++- .|..+|..|.+  .|.+|.+.+++
T Consensus         5 gK~alItGas~GIG~aia~~l~~--~G~~V~~~~r~   38 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAR--EGASLVAVDRE   38 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            35677888864 68999999999  89999998875

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=80.02  E-value=0.67  Score=27.65  Aligned_cols=35  Identities=11%  Similarity=0.181  Sum_probs=21.3

Q ss_pred             CCcEEEECCCHHHHHHHH-HHHhhCCC---CcEEEEccC
Q psy1704          27 NHKVAILGAGIIGLSTAL-ELQRRFPN---CDVTVIADK   61 (90)
Q Consensus        27 ~~~v~IiG~G~~Gl~~A~-~l~~~~~g---~~v~vie~~   61 (90)
                      ..+|+|||+|..|...+. .+..+.+.   .+++++|-+
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did   41 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDND   41 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSC
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCC
Confidence            458999999976544332 22221133   379999865