Psyllid ID: psy17052

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MHSNLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLEASLMV
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mhsnlnpdvNAFQRKFVNEVRRCDEMERKLRYLEKEikkdgipmmdvgespeapqpremIDLEASLMV
Flexible Loop (DISEMBL)
mhsnlnpdvnafqrkfvnevrrcdeMERKLRYLEkeikkdgipmmdvgespeapqpremidleaslmv
Low Complexity Region (SEG)
MHSNLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLEASLMV
Disordered region (IsUnstruct)
**************KFVNEVRRC*********************************************
Disordered Region (DISOPRED)
MHSNLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIP**********PQPREMIDLEASLM*
Disordered Region (DISEMBL)
MHSNLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLEASLMV
Disordered Region (DISPRO)
****LNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLEASLMV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHSNLNPDVNAFQRKxxxxxxxxxxxxxxxxxxxxxIKKDGIPMMDVGESPEAPQPREMIDLEASLMV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	68	2.2.26 [Sep-21-2011]
P30628	905	Probable V-type proton AT	no	N/A	0.926	0.069	0.793	8e-25
Q9I8D0	838	V-type proton ATPase 116	yes	N/A	0.926	0.075	0.746	4e-24
Q9Z1G4	839	V-type proton ATPase 116	yes	N/A	0.926	0.075	0.730	8e-24
P25286	838	V-type proton ATPase 116	yes	N/A	0.926	0.075	0.730	1e-23
Q29466	838	V-type proton ATPase 116	yes	N/A	0.926	0.075	0.730	1e-23
Q93050	837	V-type proton ATPase 116	yes	N/A	0.926	0.075	0.730	1e-23
Q5R422	837	V-type proton ATPase 116	yes	N/A	0.926	0.075	0.730	1e-23
A1A5G6	837	V-type proton ATPase 116	yes	N/A	0.926	0.075	0.698	1e-22
Q8AVM5	831	V-type proton ATPase 116	N/A	N/A	0.926	0.075	0.682	6e-22
Q9HBG4	840	V-type proton ATPase 116	no	N/A	0.911	0.073	0.555	7e-13

>sp|P30628|VPP1_CAEEL Probable V-type proton ATPase 116 kDa subunit a OS=Caenorhabditis elegans GN=unc-32 PE=2 SV=3

 Score =  112 bits (279), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 59/63 (93%)

Query: 4   NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
           +LNPDV++FQRK+VNEVRRCDEMERKLRYLE+EIKKD IPM+D GE+P+AP PREMIDLE
Sbjct: 51  DLNPDVSSFQRKYVNEVRRCDEMERKLRYLEREIKKDQIPMLDTGENPDAPLPREMIDLE 110

Query: 64  ASL 66
           A+ 
Sbjct: 111 ATF 113

Required for assembly and activity of the vacuolar ATPase. Potential role in differential targeting and regulation of the enzyme for a specific organelle.
Caenorhabditis elegans (taxid: 6239)

>sp|Q9I8D0|VPP1_CHICK V-type proton ATPase 116 kDa subunit a isoform 1 OS=Gallus gallus GN=ATP6V0A1 PE=1 SV=1

 Score =  110 bits (274), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/63 (74%), Positives = 56/63 (88%)

Query: 4   NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
           +LNPDVN FQRKFVNEVRRC+EM+RKLR++EKEIKK  IP+MD GE+PE P PR+MIDLE
Sbjct: 39  DLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIKKANIPIMDTGENPEVPFPRDMIDLE 98

Query: 64  ASL 66
           A+ 
Sbjct: 99  ANF 101

Required for assembly and activity of the vacuolar ATPase. Potential role in differential targeting and regulation of the enzyme for a specific organelle.

Gallus gallus (taxid: 9031)

>sp|Q9Z1G4|VPP1_MOUSE V-type proton ATPase 116 kDa subunit a isoform 1 OS=Mus musculus GN=Atp6v0a1 PE=1 SV=3

 Score =  108 bits (271), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 46/63 (73%), Positives = 56/63 (88%)

Query: 4   NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
           +LNPDVN FQRKFVNEVRRC+EM+RKLR++EKEI+K  IP+MD GE+PE P PR+MIDLE
Sbjct: 39  DLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLE 98

Query: 64  ASL 66
           A+ 
Sbjct: 99  ANF 101

Required for assembly and activity of the vacuolar ATPase. Potential role in differential targeting and regulation of the enzyme for a specific organelle.

Mus musculus (taxid: 10090)

>sp|P25286|VPP1_RAT V-type proton ATPase 116 kDa subunit a isoform 1 OS=Rattus norvegicus GN=Atp6v0a1 PE=2 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/63 (73%), Positives = 56/63 (88%)

Query: 4   NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
           +LNPDVN FQRKFVNEVRRC+EM+RKLR++EKEI+K  IP+MD GE+PE P PR+MIDLE
Sbjct: 39  DLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLE 98

Query: 64  ASL 66
           A+ 
Sbjct: 99  ANF 101

Required for assembly and activity of the vacuolar ATPase. Potential role in differential targeting and regulation of the enzyme for a specific organelle.

Rattus norvegicus (taxid: 10116)

>sp|Q29466|VPP1_BOVIN V-type proton ATPase 116 kDa subunit a isoform 1 OS=Bos taurus GN=ATP6V0A1 PE=2 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/63 (73%), Positives = 56/63 (88%)

Query: 4   NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
           +LNPDVN FQRKFVNEVRRC+EM+RKLR++EKEI+K  IP+MD GE+PE P PR+MIDLE
Sbjct: 39  DLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLE 98

Query: 64  ASL 66
           A+ 
Sbjct: 99  ANF 101

Required for assembly and activity of the vacuolar ATPase. Potential role in differential targeting and regulation of the enzyme for a specific organelle.

Bos taurus (taxid: 9913)

>sp|Q93050|VPP1_HUMAN V-type proton ATPase 116 kDa subunit a isoform 1 OS=Homo sapiens GN=ATP6V0A1 PE=1 SV=3

 Score =  108 bits (269), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/63 (73%), Positives = 56/63 (88%)

Query: 4   NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
           +LNPDVN FQRKFVNEVRRC+EM+RKLR++EKEI+K  IP+MD GE+PE P PR+MIDLE
Sbjct: 39  DLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLE 98

Query: 64  ASL 66
           A+ 
Sbjct: 99  ANF 101

Required for assembly and activity of the vacuolar ATPase. Potential role in differential targeting and regulation of the enzyme for a specific organelle.

Homo sapiens (taxid: 9606)

>sp|Q5R422|VPP1_PONAB V-type proton ATPase 116 kDa subunit a isoform 1 OS=Pongo abelii GN=ATP6V0A1 PE=2 SV=1

 Score =  108 bits (269), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/63 (73%), Positives = 56/63 (88%)

Query: 4   NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
           +LNPDVN FQRKFVNEVRRC+EM+RKLR++EKEI+K  IP+MD GE+PE P PR+MIDLE
Sbjct: 39  DLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLE 98

Query: 64  ASL 66
           A+ 
Sbjct: 99  ANF 101

Required for assembly and activity of the vacuolar ATPase. Potential role in differential targeting and regulation of the enzyme for a specific organelle.

Pongo abelii (taxid: 9601)

>sp|A1A5G6|VPP1_XENTR V-type proton ATPase 116 kDa subunit a isoform 1 OS=Xenopus tropicalis GN=atp6v0a1 PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/63 (69%), Positives = 55/63 (87%)

Query: 4   NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
           +LNPDVN FQRKFVNEVRRC+EM+RKLR++EKE+KK  I ++D GE+PE P PR+MIDLE
Sbjct: 39  DLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEVKKANISILDTGENPEVPFPRDMIDLE 98

Query: 64  ASL 66
           A+ 
Sbjct: 99  ANF 101

Required for assembly and activity of the vacuolar ATPase. Potential role in differential targeting and regulation of the enzyme for a specific organelle.

Xenopus tropicalis (taxid: 8364)

>sp|Q8AVM5|VPP1_XENLA V-type proton ATPase 116 kDa subunit a isoform 1 OS=Xenopus laevis GN=atp6v0a1 PE=2 SV=1

 Score =  102 bits (255), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/63 (68%), Positives = 55/63 (87%)

Query: 4   NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
           +LNPDVN FQRKFVNEVRRC+EM+RKLR++EKE+KK  I ++D GE+PE P PR++IDLE
Sbjct: 39  DLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEVKKANISILDTGENPEVPFPRDIIDLE 98

Query: 64  ASL 66
           A+ 
Sbjct: 99  ANF 101

Required for assembly and activity of the vacuolar ATPase. Potential role in differential targeting and regulation of the enzyme for a specific organelle.

Xenopus laevis (taxid: 8355)

>sp|Q9HBG4|VPP4_HUMAN V-type proton ATPase 116 kDa subunit a isoform 4 OS=Homo sapiens GN=ATP6V0A4 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/63 (55%), Positives = 47/63 (74%), Gaps = 1/63 (1%)

Query: 4   NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
           +LN +VN+FQRKFVNEVRRC+ +ER LR+LE E++ + I +  + +SP  P PREMI LE
Sbjct: 39  DLNMNVNSFQRKFVNEVRRCESLERILRFLEDEMQNE-IVVQLLEKSPLTPLPREMITLE 97

Query: 64  ASL 66
             L
Sbjct: 98  TVL 100

Part of the proton channel of the V-ATPase that is involved in normal vectorial acid transport into the urine by the kidney.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
347970463	836	AGAP003711-PA [Anopheles gambiae str. PE	0.926	0.075	0.920	4e-29
347970459	838	AGAP003711-PB [Anopheles gambiae str. PE	0.926	0.075	0.920	4e-29
195110847	892	GI22777 [Drosophila mojavensis] gi|19391	0.926	0.070	0.920	4e-29
390177592	836	GA14320, isoform C [Drosophila pseudoobs	0.926	0.075	0.920	4e-29
347970457	855	AGAP003711-PD [Anopheles gambiae str. PE	0.926	0.073	0.920	4e-29
170038845	847	vacuolar proton ATPase [Culex quinquefas	0.926	0.074	0.920	4e-29
390177596	850	GA14320, isoform E [Drosophila pseudoobs	0.926	0.074	0.920	6e-29
24650965	836	vacuolar H[+] ATPase subunit 100-1, isof	0.926	0.075	0.920	6e-29
390177598	833	GA14320, isoform F [Drosophila pseudoobs	0.926	0.075	0.920	7e-29
390177602	852	GA14320, isoform H [Drosophila pseudoobs	0.926	0.073	0.920	7e-29

>gi|347970463|ref|XP_562586.3| AGAP003711-PA [Anopheles gambiae str. PEST] gi|333468942|gb|EAL40624.3| AGAP003711-PA [Anopheles gambiae str. PEST]

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/63 (92%), Positives = 61/63 (96%)

Query: 4   NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
           +LNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPM+D GESPEAPQPREMIDLE
Sbjct: 39  DLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMLDTGESPEAPQPREMIDLE 98

Query: 64  ASL 66
           A+ 
Sbjct: 99  ATF 101

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347970459|ref|XP_003436583.1| AGAP003711-PB [Anopheles gambiae str. PEST] gi|347970461|ref|XP_003436584.1| AGAP003711-PC [Anopheles gambiae str. PEST] gi|333468943|gb|EGK97124.1| AGAP003711-PB [Anopheles gambiae str. PEST] gi|333468944|gb|EGK97125.1| AGAP003711-PC [Anopheles gambiae str. PEST]

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/63 (92%), Positives = 61/63 (96%)

Query: 4   NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
           +LNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPM+D GESPEAPQPREMIDLE
Sbjct: 39  DLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMLDTGESPEAPQPREMIDLE 98

Query: 64  ASL 66
           A+ 
Sbjct: 99  ATF 101

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195110847|ref|XP_001999991.1| GI22777 [Drosophila mojavensis] gi|193916585|gb|EDW15452.1| GI22777 [Drosophila mojavensis]

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/63 (92%), Positives = 61/63 (96%)

Query: 4   NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
           +LNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPM+D GESPEAPQPREMIDLE
Sbjct: 39  DLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMLDTGESPEAPQPREMIDLE 98

Query: 64  ASL 66
           A+ 
Sbjct: 99  ATF 101

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390177592|ref|XP_003736427.1| GA14320, isoform C [Drosophila pseudoobscura pseudoobscura] gi|388859109|gb|EIM52500.1| GA14320, isoform C [Drosophila pseudoobscura pseudoobscura]

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/63 (92%), Positives = 61/63 (96%)

Query: 4   NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
           +LNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPM+D GESPEAPQPREMIDLE
Sbjct: 39  DLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMLDTGESPEAPQPREMIDLE 98

Query: 64  ASL 66
           A+ 
Sbjct: 99  ATF 101

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347970457|ref|XP_003436582.1| AGAP003711-PD [Anopheles gambiae str. PEST] gi|333468945|gb|EGK97126.1| AGAP003711-PD [Anopheles gambiae str. PEST]

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/63 (92%), Positives = 61/63 (96%)

Query: 4   NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
           +LNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPM+D GESPEAPQPREMIDLE
Sbjct: 39  DLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMLDTGESPEAPQPREMIDLE 98

Query: 64  ASL 66
           A+ 
Sbjct: 99  ATF 101

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170038845|ref|XP_001847258.1| vacuolar proton ATPase [Culex quinquefasciatus] gi|167862449|gb|EDS25832.1| vacuolar proton ATPase [Culex quinquefasciatus]

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/63 (92%), Positives = 61/63 (96%)

Query: 4   NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
           +LNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPM+D GESPEAPQPREMIDLE
Sbjct: 39  DLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMLDTGESPEAPQPREMIDLE 98

Query: 64  ASL 66
           A+ 
Sbjct: 99  ATF 101

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390177596|ref|XP_003736429.1| GA14320, isoform E [Drosophila pseudoobscura pseudoobscura] gi|388859111|gb|EIM52502.1| GA14320, isoform E [Drosophila pseudoobscura pseudoobscura]

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 58/63 (92%), Positives = 61/63 (96%)

Query: 4   NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
           +LNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPM+D GESPEAPQPREMIDLE
Sbjct: 39  DLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMLDTGESPEAPQPREMIDLE 98

Query: 64  ASL 66
           A+ 
Sbjct: 99  ATF 101

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24650965|ref|NP_733274.1| vacuolar H[+] ATPase subunit 100-1, isoform B [Drosophila melanogaster] gi|24650967|ref|NP_733275.1| vacuolar H[+] ATPase subunit 100-1, isoform D [Drosophila melanogaster] gi|442621618|ref|NP_733276.3| vacuolar H[+] ATPase subunit 100-1, isoform K [Drosophila melanogaster] gi|23172538|gb|AAN14158.1| vacuolar H[+] ATPase subunit 100-1, isoform B [Drosophila melanogaster] gi|23172539|gb|AAN14159.1| vacuolar H[+] ATPase subunit 100-1, isoform D [Drosophila melanogaster] gi|281183445|gb|ADA53591.1| RE06427p [Drosophila melanogaster] gi|440218005|gb|AAN14160.3| vacuolar H[+] ATPase subunit 100-1, isoform K [Drosophila melanogaster]

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 58/63 (92%), Positives = 61/63 (96%)

Query: 4   NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
           +LNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPM+D GESPEAPQPREMIDLE
Sbjct: 39  DLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMLDTGESPEAPQPREMIDLE 98

Query: 64  ASL 66
           A+ 
Sbjct: 99  ATF 101

Source: Drosophila melanogaster

Species: melanogaster group

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

>gi|390177598|ref|XP_003736430.1| GA14320, isoform F [Drosophila pseudoobscura pseudoobscura] gi|388859112|gb|EIM52503.1| GA14320, isoform F [Drosophila pseudoobscura pseudoobscura]

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 58/63 (92%), Positives = 61/63 (96%)

Query: 4   NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
           +LNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPM+D GESPEAPQPREMIDLE
Sbjct: 39  DLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMLDTGESPEAPQPREMIDLE 98

Query: 64  ASL 66
           A+ 
Sbjct: 99  ATF 101

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390177602|ref|XP_001358296.3| GA14320, isoform H [Drosophila pseudoobscura pseudoobscura] gi|388859114|gb|EAL27434.3| GA14320, isoform H [Drosophila pseudoobscura pseudoobscura]

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 58/63 (92%), Positives = 61/63 (96%)

Query: 4   NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
           +LNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPM+D GESPEAPQPREMIDLE
Sbjct: 39  DLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMLDTGESPEAPQPREMIDLE 98

Query: 64  ASL 66
           A+ 
Sbjct: 99  ATF 101

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
FB|FBgn0028671	855	Vha100-1 "Vacuolar H[+] ATPase	0.911	0.072	0.935	2.2e-26
WB|WBGene00006768	905	unc-32 [Caenorhabditis elegans	0.911	0.068	0.806	1.4e-22
UNIPROTKB|P30628	905	unc-32 "Probable V-type proton	0.911	0.068	0.806	1.4e-22
UNIPROTKB|K7EM24	130	ATP6V0A1 "V-type proton ATPase	0.911	0.476	0.741	9e-22
ZFIN|ZDB-GENE-030131-3027	834	atp6v0a1a "ATPase, H+ transpor	0.911	0.074	0.758	6.3e-21
UNIPROTKB|Q9I8D0	838	ATP6V0A1 "V-type proton ATPase	0.911	0.073	0.758	6.3e-21
ZFIN|ZDB-GENE-050522-215	839	atp6v0a1b "ATPase, H+ transpor	0.911	0.073	0.758	1e-20
UNIPROTKB|F1PVS8	801	ATP6V0A1 "Uncharacterized prot	0.911	0.077	0.741	1.2e-20
UNIPROTKB|F1MH43	832	LOC785923 "Uncharacterized pro	0.911	0.074	0.741	1.3e-20
UNIPROTKB|F1S1D6	832	LOC100523018 "Uncharacterized	0.911	0.074	0.741	1.3e-20

FB|FBgn0028671 Vha100-1 "Vacuolar H[+] ATPase 100kD subunit 1" [Drosophila melanogaster (taxid:7227)]

 Score = 308 (113.5 bits), Expect = 2.2e-26, P = 2.2e-26
 Identities = 58/62 (93%), Positives = 61/62 (98%)

Query:     4 NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
             +LNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPM+D GESPEAPQPREMIDLE
Sbjct:    39 DLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMLDTGESPEAPQPREMIDLE 98

Query:    64 AS 65
             A+
Sbjct:    99 AT 100

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=ISS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0045202 "synapse" evidence=IDA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0051452 "intracellular pH reduction" evidence=IMP

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0048388 "endosomal lumen acidification" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IMP

GO:0009881 "photoreceptor activity" evidence=IMP

WB|WBGene00006768 unc-32 [Caenorhabditis elegans (taxid:6239)]

 Score = 273 (101.2 bits), Expect = 1.4e-22, P = 1.4e-22
 Identities = 50/62 (80%), Positives = 59/62 (95%)

Query:     4 NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
             +LNPDV++FQRK+VNEVRRCDEMERKLRYLE+EIKKD IPM+D GE+P+AP PREMIDLE
Sbjct:    51 DLNPDVSSFQRKYVNEVRRCDEMERKLRYLEREIKKDQIPMLDTGENPDAPLPREMIDLE 110

Query:    64 AS 65
             A+
Sbjct:   111 AT 112

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040039 "inductive cell migration" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0016358 "dendrite development" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0043068 "positive regulation of programmed cell death" evidence=IGI;IMP

GO:0001666 "response to hypoxia" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IPI

GO:0007271 "synaptic transmission, cholinergic" evidence=IMP

UNIPROTKB|P30628 unc-32 "Probable V-type proton ATPase 116 kDa subunit a" [Caenorhabditis elegans (taxid:6239)]

 Score = 273 (101.2 bits), Expect = 1.4e-22, P = 1.4e-22
 Identities = 50/62 (80%), Positives = 59/62 (95%)

Query:     4 NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
             +LNPDV++FQRK+VNEVRRCDEMERKLRYLE+EIKKD IPM+D GE+P+AP PREMIDLE
Sbjct:    51 DLNPDVSSFQRKYVNEVRRCDEMERKLRYLEREIKKDQIPMLDTGENPDAPLPREMIDLE 110

Query:    64 AS 65
             A+
Sbjct:   111 AT 112

GO:0016021 "integral to membrane" evidence=NAS

GO:0040013 "negative regulation of locomotion" evidence=NAS

GO:0015986 "ATP synthesis coupled proton transport" evidence=NAS

UNIPROTKB|K7EM24 ATP6V0A1 "V-type proton ATPase 116 kDa subunit a isoform 1" [Homo sapiens (taxid:9606)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 46/62 (74%), Positives = 56/62 (90%)

Query:     4 NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
             +LNPDVN FQRKFVNEVRRC+EM+RKLR++EKEI+K  IP+MD GE+PE P PR+MIDLE
Sbjct:    39 DLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLE 98

Query:    64 AS 65
             A+
Sbjct:    99 AN 100

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

ZFIN|ZDB-GENE-030131-3027 atp6v0a1a "ATPase, H+ transporting, lysosomal V0 subunit a isoform 1a" [Danio rerio (taxid:7955)]

 Score = 257 (95.5 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 47/62 (75%), Positives = 57/62 (91%)

Query:     4 NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
             +LNPDVNAFQRKFVNEVRRC+EM+RKLR++EKEIKK  IP++D GE+PE P PR+MIDLE
Sbjct:    39 DLNPDVNAFQRKFVNEVRRCEEMDRKLRFVEKEIKKANIPIVDTGENPEVPFPRDMIDLE 98

Query:    64 AS 65
             A+
Sbjct:    99 AT 100

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0001845 "phagolysosome assembly" evidence=IMP

GO:0000046 "autophagic vacuole fusion" evidence=IMP

UNIPROTKB|Q9I8D0 ATP6V0A1 "V-type proton ATPase 116 kDa subunit a isoform 1" [Gallus gallus (taxid:9031)]

 Score = 257 (95.5 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 47/62 (75%), Positives = 56/62 (90%)

Query:     4 NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
             +LNPDVN FQRKFVNEVRRC+EM+RKLR++EKEIKK  IP+MD GE+PE P PR+MIDLE
Sbjct:    39 DLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIKKANIPIMDTGENPEVPFPRDMIDLE 98

Query:    64 AS 65
             A+
Sbjct:    99 AN 100

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

ZFIN|ZDB-GENE-050522-215 atp6v0a1b "ATPase, H+ transporting, lysosomal V0 subunit a isoform 1b" [Danio rerio (taxid:7955)]

 Score = 255 (94.8 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 47/62 (75%), Positives = 55/62 (88%)

Query:     4 NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
             +LNPDVN FQRKFVNEVRRC+EM+RKLR++EKEIKK  IP MD GE+PE P PR+MIDLE
Sbjct:    39 DLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIKKANIPTMDTGENPEVPFPRDMIDLE 98

Query:    64 AS 65
             A+
Sbjct:    99 AT 100

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0042221 "response to chemical stimulus" evidence=IDA

UNIPROTKB|F1PVS8 ATP6V0A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 254 (94.5 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 46/62 (74%), Positives = 56/62 (90%)

Query:     4 NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
             +LNPDVN FQRKFVNEVRRC+EM+RKLR++EKEI+K  IP+MD GE+PE P PR+MIDLE
Sbjct:    39 DLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLE 98

Query:    64 AS 65
             A+
Sbjct:    99 AN 100

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=IEA

UNIPROTKB|F1MH43 LOC785923 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 254 (94.5 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 46/62 (74%), Positives = 56/62 (90%)

Query:     4 NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
             +LNPDVN FQRKFVNEVRRC+EM+RKLR++EKEI+K  IP+MD GE+PE P PR+MIDLE
Sbjct:    39 DLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLE 98

Query:    64 AS 65
             A+
Sbjct:    99 AN 100

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=IEA

UNIPROTKB|F1S1D6 LOC100523018 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 254 (94.5 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 46/62 (74%), Positives = 56/62 (90%)

Query:     4 NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
             +LNPDVN FQRKFVNEVRRC+EM+RKLR++EKEI+K  IP+MD GE+PE P PR+MIDLE
Sbjct:    39 DLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLE 98

Query:    64 AS 65
             A+
Sbjct:    99 AN 100

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93050	VPP1_HUMAN	No assigned EC number	0.7301	0.9264	0.0752	yes	N/A
Q54E04	VATM_DICDI	No assigned EC number	0.6	0.5147	0.0429	yes	N/A
Q29466	VPP1_BOVIN	No assigned EC number	0.7301	0.9264	0.0751	yes	N/A
P25286	VPP1_RAT	No assigned EC number	0.7301	0.9264	0.0751	yes	N/A
Q9I8D0	VPP1_CHICK	No assigned EC number	0.7460	0.9264	0.0751	yes	N/A
A1A5G6	VPP1_XENTR	No assigned EC number	0.6984	0.9264	0.0752	yes	N/A
O13742	VPH1_SCHPO	No assigned EC number	0.5416	0.7058	0.0577	yes	N/A
Q8RWZ7	VHAA1_ARATH	No assigned EC number	0.5128	0.5735	0.0477	yes	N/A
Q9Z1G4	VPP1_MOUSE	No assigned EC number	0.7301	0.9264	0.0750	yes	N/A
Q5R422	VPP1_PONAB	No assigned EC number	0.7301	0.9264	0.0752	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	68
pfam01496	707	pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni	1e-22

>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family

 Score = 88.6 bits (220), Expect = 1e-22
 Identities = 40/62 (64%), Positives = 48/62 (77%)

Query: 5  LNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLEA 64
          LN DV+AFQRKFVNEVRRCDE+ERKLR LE +IKK GIP+ D G  P+ P  +E +DLE 
Sbjct: 15 LNEDVSAFQRKFVNEVRRCDEVERKLRKLESKIKKLGIPLKDTGGKPDVPPSKEFLDLEE 74

Query: 65 SL 66
           +
Sbjct: 75 EI 76

This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) subunits, as well as V-type ATP synthase subunit i. The V-type ATPases family are proton pumps that acidify intracellular compartments in eukaryotic cells for example yeast central vacuoles, clathrin-coated and synaptic vesicles. They have important roles in membrane trafficking processes. The 116kDa subunit (subunit a) in the V-type ATPase is part of the V0 functional domain responsible for proton transport. The a subunit is a transmembrane glycoprotein with multiple putative transmembrane helices it has a hydrophilic amino terminal and a hydrophobic carboxy terminal. It has roles in proton transport and assembly of the V-type ATPase complex. This subunit is encoded by two homologous gene in yeast VPH1 and STV1. Length = 707

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
KOG2189|consensus	829		99.91
PF01496	759	V_ATPase_I: V-type ATPase 116kDa subunit family ;	99.32

>KOG2189|consensus

Probab=99.91  E-value=6.5e-25  Score=170.02  Aligned_cols=67  Identities=73%  Similarity=1.150  Sum_probs=64.1

Q ss_pred             CCCCCCCCCCcchhhhhhhhcchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcchHHHHHHhhc
Q psy17052          1 MHSNLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLEASLM   67 (68)
Q Consensus         1 ~FrDLN~~v~~fqR~f~~~irRcde~er~lr~l~~~i~k~~i~~~~~~~~~~~p~~~~id~l~~~l~   67 (68)
                      ||||||++|++|||+||+||||||||||+|||+++||.|++++++..++.|++|++++|++++++++
T Consensus        36 qFrDLN~~v~afQR~fv~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~  102 (829)
T KOG2189|consen   36 QFRDLNPDVSAFQRKFVNEVRRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLE  102 (829)
T ss_pred             EeeeCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHH
Confidence            7999999999999999999999999999999999999999999988778888999999999999875

>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.32  E-value=2.4e-13  Score=105.04  Aligned_cols=66  Identities=62%  Similarity=1.009  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCcchhhhhhhhcchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcchHHHHHHhh
Q psy17052          1 MHSNLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLEASL   66 (68)
Q Consensus         1 ~FrDLN~~v~~fqR~f~~~irRcde~er~lr~l~~~i~k~~i~~~~~~~~~~~p~~~~id~l~~~l   66 (68)
                      ||+|||+++++|||+|+++++|||||+|+|++++++|.|.++.++.....+..+.+..+++++..+
T Consensus        11 qF~Dln~~~~~fqr~f~~ev~r~de~erkL~~le~~I~k~~~~~~~~~~~~~~~~~~~i~~le~~l   76 (759)
T PF01496_consen   11 QFRDLNEDVSAFQRKFVNEVRRCDEMERKLRFLEEEIKKLKIPLPEKNDKPDAPKPKEIDELEEEL   76 (759)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             EEEECccchhHHHHHhhhccccHHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHH
Confidence            899999999999999999999999999999999999999998877544444445555555555443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	68
3rrk_A	357	V-type ATPase 116 kDa subunit; alpha beta fold, pr	2e-05

>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber} Length = 357

 Score = 39.4 bits (91), Expect = 2e-05
 Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 4/63 (6%)

Query: 4   NLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLE 63
            L PD     R    E       E  +   E+ +   G+  +        P    + + E
Sbjct: 43  PLRPDELGEYRLSPTEEAELKRWEAVVSQAEQSLTVVGLATVP----SSKPFTGSLEEAE 98

Query: 64  ASL 66
           A L
Sbjct: 99  AVL 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	68
3rrk_A	357	V-type ATPase 116 kDa subunit; alpha beta fold, pr	97.02

>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}

Probab=97.02  E-value=0.00036  Score=48.51  Aligned_cols=41  Identities=12%  Similarity=0.021  Sum_probs=37.4

Q ss_pred             CCCCCCCCCCcch--hhhh-hhhcchHHHHHHHHHHHHHHHhcC
Q psy17052          1 MHSNLNPDVNAFQ--RKFV-NEVRRCDEMERKLRYLEKEIKKDG   41 (68)
Q Consensus         1 ~FrDLN~~v~~fq--R~f~-~~irRcde~er~lr~l~~~i~k~~   41 (68)
                      ||+|+|++++.|+  ++|. +++++|+++.++++++.+.+.++.
T Consensus        40 hi~d~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~L~~~~   83 (357)
T 3rrk_A           40 HIDPLRPDELGEYRLSPTEEAELKRWEAVVSQAEQSLTVVGLAT   83 (357)
T ss_dssp             EEEEECGGGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             EEEeccccccccccCCccchHHHhHHHHHHHHHHHHHHHhcccc
Confidence            7899999999999  8877 689999999999999999999764

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00