Psyllid ID: psy17080
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 565 | 2.2.26 [Sep-21-2011] | |||||||
| Q9VCA2 | 548 | Organic cation transporte | no | N/A | 0.867 | 0.894 | 0.380 | 8e-80 | |
| Q95R48 | 567 | Organic cation transporte | no | N/A | 0.863 | 0.860 | 0.332 | 4e-71 | |
| Q8MJI6 | 554 | Solute carrier family 22 | yes | N/A | 0.886 | 0.904 | 0.311 | 1e-65 | |
| O77504 | 554 | Solute carrier family 22 | no | N/A | 0.886 | 0.904 | 0.309 | 5e-64 | |
| Q5R5H7 | 555 | Solute carrier family 22 | yes | N/A | 0.893 | 0.909 | 0.312 | 1e-63 | |
| Q9Y226 | 551 | Solute carrier family 22 | yes | N/A | 0.870 | 0.892 | 0.320 | 4e-63 | |
| O15244 | 555 | Solute carrier family 22 | no | N/A | 0.893 | 0.909 | 0.308 | 6e-63 | |
| O15245 | 554 | Solute carrier family 22 | no | N/A | 0.888 | 0.906 | 0.308 | 7e-63 | |
| A7MBE0 | 563 | Solute carrier family 22 | no | N/A | 0.884 | 0.888 | 0.319 | 2e-62 | |
| O02713 | 554 | Solute carrier family 22 | no | N/A | 0.884 | 0.902 | 0.310 | 3e-62 |
| >sp|Q9VCA2|ORCT_DROME Organic cation transporter protein OS=Drosophila melanogaster GN=Orct PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 298 bits (763), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 195/513 (38%), Positives = 286/513 (55%), Gaps = 23/513 (4%)
Query: 28 EDVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIP---ASLSTLT 84
+DVI + +G+FG +Q ++ L L I C +H A F A DF C +P S+ L+
Sbjct: 4 DDVI-THLGEFGPYQKRIYYLLCLPAIVCAFHKLAGVFLLAKPDFRCALPYENGSIYELS 62
Query: 85 LDQWKNLSSISGVPYNP-CNILDLDYSLPYSTLLN--IRRDVTAVRPCLQWTYDSSSFGH 141
W NLS P N C+ D+DY+ Y LN I R + C + YD S + +
Sbjct: 63 PHLW-NLS----YPENERCSYYDVDYTEEY---LNGSIPRSSNETKTCSSYVYDRSKYLN 114
Query: 142 TIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVL 201
+ ++EW+LVCS S L + ++ +F+LGV G G +SDK GRK SLV QL+ GVL
Sbjct: 115 SAVTEWNLVCSRSLLSATSDSLFMLGVLLGSLIFGQMSDKLGRKPTFFASLVLQLIFGVL 174
Query: 202 VAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAIS 261
A++P + Y + R +G + +V+ +E+VG + GV VG++ +
Sbjct: 175 AAVAPEYFSYTISRMIVGATTSGVFLVAYVIALEMVGSSYRLFAGVAMQMFFSVGFMLTA 234
Query: 262 GIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRK 321
G AY+ H+WR LQ IT+P + FL +WI+PES RWL+ GR EA I+ AAK N +
Sbjct: 235 GFAYFIHDWRWLQIAITLPGLLFLCYYWIIPESARWLLMKGRKDEAFVIIEKAAKENKVE 294
Query: 322 LPLNL-EKLLKESVLSTNQDVGKKVQ----VMDLWRTPLIRLISFVQYIIWFSVYLVYYG 376
+P + E+L+ E QD Q V DL R P +R + + + WF VYYG
Sbjct: 295 VPNEIYEQLVDEVAEKKKQDEMAASQPAATVFDLLRYPNLRRKTLLIFFDWFVNSGVYYG 354
Query: 377 LVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF 436
L N +N+GG+ +N +ISG VE P + +F L + GRR LC T + AG++ L T+ F
Sbjct: 355 LSWNTNNLGGNQLVNFMISGAVEIPGYTLLLFTLNRWGRRSILCGTMMVAGISLLATI-F 413
Query: 437 APG--SFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPY 494
P +++ ++ AM+GK AI+SS I I++AE FPT +RN+G+GASS+ A V IL PY
Sbjct: 414 VPSDMNWLIVACAMIGKLAITSSYGTIYIFSAEQFPTVVRNVGLGASSMVARVGGILAPY 473
Query: 495 LWHMQSINIHFPMGLLGVVGVLGGLSVLLLPDT 527
L + I P+ + G + + GL LLLP+T
Sbjct: 474 LKLLGEIWRPLPLIICGALSLTAGLLSLLLPET 506
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Probably transports organic cations. Drosophila melanogaster (taxid: 7227) |
| >sp|Q95R48|OCTL_DROME Organic cation transporter-like protein OS=Drosophila melanogaster GN=Orct2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 269 bits (688), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 169/508 (33%), Positives = 274/508 (53%), Gaps = 20/508 (3%)
Query: 35 IGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTLTLDQWKNLSSI 94
+GDFG++Q + + L +IP +H A F A DF C +P + + D +L ++
Sbjct: 10 LGDFGRYQKIIYFLICLTSIPVAFHKLAGVFLLAKPDFRCALPFENGS-SYDLPTHLWNL 68
Query: 95 SGVPYNPCNILDLDYSLPYSTLLN--IRRDVTAVRPCLQWTYDSSSFGHTIISEWDLVCS 152
S C+ D+DY+ Y LN I R + C + YD S + ++ ++EW+LVC
Sbjct: 69 SYPENERCSYYDVDYTEEY---LNGSIPRSSNETKTCSSYVYDRSKYLNSAVTEWNLVCG 125
Query: 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYL 212
+ + ++ +F+LGV G G +SDK+GRK L SLV Q++ GVL ++P + Y
Sbjct: 126 RDFMAATSDSLFMLGVLLGSIVFGQLSDKYGRKPILFASLVIQVLFGVLAGVAPEYFTYT 185
Query: 213 VVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSHNWRL 272
R +G + +V+ ME+VG G+ + VG++ + AY+ H+WR
Sbjct: 186 FARLMVGATTSGVFLVAYVVAMEMVGPDKRLYAGIFVMMFFSVGFMLTAVFAYFVHDWRW 245
Query: 273 LQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLP--------- 323
LQ +T+P + F+ +WI+PES RWL+ GR A+ + AA+FN ++
Sbjct: 246 LQIALTLPGLIFMFYYWIIPESARWLLLKGRKDCAIANMQKAARFNKVEISDEALSELLD 305
Query: 324 --LNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNL 381
N E+ K+ + D G V DL+ P +R + + ++ W VYYGL N
Sbjct: 306 EGENSEEKAKQKLEDQELDEGPPPSVWDLFCYPNLRRKTLLIFLDWLVTSGVYYGLSWNT 365
Query: 382 SNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSF 441
SN+GG+V LN +ISG VE PA + + L + GRR LC + AGL+ L T+ P
Sbjct: 366 SNLGGNVLLNFVISGAVEIPAYIFLLLTLNRWGRRSILCGCLVMAGLSLLATV-IIPQRM 424
Query: 442 IT--ISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWHMQ 499
T ++ AM+GK AI++S + I++AE FPT +RN+ +GA+S+ A ++ ++ P+L +
Sbjct: 425 HTLIVACAMLGKLAITASYGTVYIFSAEQFPTVVRNVALGAASMVARISGMMAPFLNFLA 484
Query: 500 SINIHFPMGLLGVVGVLGGLSVLLLPDT 527
+I P+ + G + ++ GL LLLP+T
Sbjct: 485 TIWKPLPLLICGSLTLVAGLLSLLLPET 512
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Probably transports organic cations. Drosophila melanogaster (taxid: 7227) |
| >sp|Q8MJI6|S22A2_RABIT Solute carrier family 22 member 2 OS=Oryctolagus cuniculus GN=SLC22A2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 251 bits (641), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 167/536 (31%), Positives = 279/536 (52%), Gaps = 35/536 (6%)
Query: 29 DVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTLTLDQW 88
D I +G F +Q Q L+L++ T + F G + D C P W
Sbjct: 5 DDILEQVGHFHFFQKQTFFLLALISAAFTPIYVGIVFLGFTPDHRCRSPGVAELSQRCGW 64
Query: 89 K----------NLSSISGVPYNPCNILDLDYSL-------PYSTLLNIRRDVTAVRPCLQ 131
L + G C ++D++ P ++L R + + PC
Sbjct: 65 SPGEELNYTVPGLGAADGAFARQCMRYEVDWNQSSPGCVDPLASLAPNRSHL-PLGPCQH 123
Query: 132 -WTYDSSSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMG 190
W YD+ G +I++E++LVC+ S + L + +G G G ++D+FGRK L+
Sbjct: 124 GWVYDTP--GSSIVTEFNLVCARSWMLDLFQSAVNIGFFIGSVGIGYLADRFGRKLCLLV 181
Query: 191 SLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYL 250
+++ GVL+A+SP + L+ R G + G++L E VG + +G++Y
Sbjct: 182 TILINAAAGVLMAVSPNYTWMLIFRLIQGLVSKAGWLIGYILITEFVGLNYRRTVGILYQ 241
Query: 251 FPVPVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKI 310
VG + ++G+AY WR LQ +T+P FL +W +PESPRWL+S +N +AM+I
Sbjct: 242 VAFTVGLLVLAGVAYALPRWRWLQLTVTLPYFCFLLYYWCIPESPRWLISQNKNAKAMRI 301
Query: 311 LGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQ--VMDLWRTPLIRLISFVQYIIWF 368
+ AK N + LP++L+ L +DVG+K+ +DL RTP IR + + WF
Sbjct: 302 MEHIAKKNGKSLPVSLQS------LRAAEDVGEKLNPSFLDLVRTPQIRKHTCILMYNWF 355
Query: 369 SVYLVYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGL 428
+ ++Y GL+++L GGD+YL+ S +VEFPA + I + ++GRR P ++ + AG
Sbjct: 356 TSSVLYQGLIMHLGLAGGDIYLDFFYSALVEFPAAFLIIATIDRVGRRYPWAVSNMVAGA 415
Query: 429 ACLMTLGFAPGSF--ITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAG 486
ACL ++ F P + I++A +G+ I+ + ++ + AEL+PT +RNLGV S
Sbjct: 416 ACLASV-FVPDDLQGLRITVACLGRMGITMAYEMVCLVNAELYPTFIRNLGVLVCSSLCD 474
Query: 487 VALILIPYL-WHMQSINIHFPMGLLGVVGVLGGLSVLLLPDTTG--LADNLHQLEN 539
V I+ P+L + + +I + P+ + VVG++ G VL+LP+T G L + + + EN
Sbjct: 475 VGGIVTPFLVYRLTAIWLQLPLVVFAVVGLVAGGLVLMLPETKGRTLPETIEEAEN 530
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Mediates tubular uptake of organic compounds from circulation. Mediates the influx of agmatine, dopamine, noradrenaline (norepinephrine), serotonin, choline, famotidine, ranitidine, histamin, creatinine, amantadine, memantine, acriflavine, 4-[4-(dimethylamino)-styryl]-N-methylpyridinium ASP, amiloride, metformin, N-1-methylnicotinamide (NMN), 1-methyl-4-phenylpyridinium (MPP), cisplatin and oxaliplatin. Cisplatin may develop a nephrotoxic action. Transport of creatinine is inhibited by fluoroquinolones such as DX-619 and LVFX. This transporter is a major determinant of the anticancer activity of oxaliplatin and may contribute to antitumor specificity (By similarity). Mediates tubular uptake of tetraethylammonium (TEA) and cimetidine. Oryctolagus cuniculus (taxid: 9986) |
| >sp|O77504|S22A1_RABIT Solute carrier family 22 member 1 OS=Oryctolagus cuniculus GN=SLC22A1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 245 bits (626), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 166/536 (30%), Positives = 279/536 (52%), Gaps = 35/536 (6%)
Query: 29 DVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTLTLDQW 88
D + +G+FG +Q + LFL L++ + F G + D C P W
Sbjct: 5 DDVLEQVGEFGWFQKRTFLFLCLISAILAPIYLGIVFLGFTPDHRCRSPGVDELSQRCGW 64
Query: 89 K----------NLSSISGVPYNPCNILDLDYSL-------PYSTLLNIRRDVTAVRPCLQ 131
L + G C ++D++ P ++L R + + PC
Sbjct: 65 SPEEELNYTVPGLGATDGAFVRQCMRYEVDWNQSSLGCVDPLASLAPNRSHL-PLGPCQH 123
Query: 132 -WTYDSSSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMG 190
W YD+ G +I++E++LVC+++ L + LG G G ++D+FGRK L+
Sbjct: 124 GWVYDTP--GSSIVTEFNLVCADAWKVDLFQSCVNLGFFLGSLGVGYIADRFGRKLCLLL 181
Query: 191 SLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYL 250
+ + V GVL A++P + L+ R G SG+ L E VG + + ++Y
Sbjct: 182 TTLINAVSGVLTAVAPDYTSMLLFRLLQGLVSKGSWMSGYTLITEFVGSGYRRTVAILYQ 241
Query: 251 FPVPVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKI 310
VG +A+SG+AY NWR LQ +++PT L +W +PESPRWL+S RN +A+KI
Sbjct: 242 VAFSVGLVALSGVAYAIPNWRWLQLTVSLPTFLCLFYYWCVPESPRWLLSQKRNTDAVKI 301
Query: 311 LGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKV--QVMDLWRTPLIRLISFVQYIIWF 368
+ + A+ N + P +L+ +LS ++DV +K+ + DL+RTP +R +F+ +WF
Sbjct: 302 MDNIAQKNGKLPPADLK------MLSLDEDVTEKLSPSLADLFRTPNLRKHTFILMFLWF 355
Query: 369 SVYLVYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGL 428
+ ++Y GL+L++ GG+VYL+ S +VEFPA + + + ++GR P+ + L AG+
Sbjct: 356 TCSVLYQGLILHMGATGGNVYLDFFYSSLVEFPAAFVILVTIDRVGRIYPMAASNLAAGV 415
Query: 429 ACLMTLGFAPGSF--ITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAG 486
A ++ + F P +TI L+ VG+ + +I + AEL+PT +RNLGV S
Sbjct: 416 ASVILI-FVPQDLHWLTIVLSCVGRMGATIVLQMICLVNAELYPTFVRNLGVMVCSALCD 474
Query: 487 VALILIPYL-WHMQSINIHFPMGLLGVVGVLGGLSVLLLPDTTGLA--DNLHQLEN 539
V I+ P++ + + + P+ + GV+G+L G LLLP+T G+A + + EN
Sbjct: 475 VGGIITPFMVFRLMEVWQPLPLIVFGVLGLLAGGMTLLLPETKGVALPETIEDAEN 530
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Translocates a broad array of organic cations with various structures and molecular weights including the model compounds 1-methyl-4-phenylpyridinium (MPP), tetraethylammonium (TEA), N-1-methylnicotinamide (NMN), 4-(4-(dimethylamino)styryl)-N-methylpyridinium (ASP), the endogenous compounds choline, guanidine, histamine, epinephrine, adrenaline, noradrenaline and dopamine, and the drugs quinine, and metformin. The transport of organic cations is inhibited by a broad array of compounds like tetramethylammonium (TMA), cocaine, lidocaine, NMDA receptor antagonists, atropine, prazosin, cimetidine, TEA and NMN, guanidine, cimetidine, choline, procainamide, quinine, tetrabutylammonium, and tetrapentylammonium. Translocates organic cations in an electrogenic and pH-independent manner. Translocates organic cations across the plasma membrane in both directions. Transports the polyamines spermine and spermidine. Transports pramipexole across the basolateral membrane of the proximal tubular epithelial cells. The choline transport is activated by MMTS. Regulated by various intracellular signaling pathways including inhibition by protein kinase A activation, and endogenously activation by the calmodulin complex, the calmodulin-dependent kinase II and LCK tyrosine kinase. Oryctolagus cuniculus (taxid: 9986) |
| >sp|Q5R5H7|S22A2_PONAB Solute carrier family 22 member 2 OS=Pongo abelii GN=SLC22A2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (624), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 169/541 (31%), Positives = 288/541 (53%), Gaps = 36/541 (6%)
Query: 24 PDVPEDVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTL 83
P +DV+ G+F +Q Q+ L+LL+ T + F G + D C P
Sbjct: 2 PTTVDDVLEHG-GEFHFFQKQMFFLLALLSATFTPIYVGIVFLGFTPDHRCRSPGVAELS 60
Query: 84 TLDQWKNLSSISGVPYNP----------CNILDLDYSL-------PYSTLLNIRRDVTAV 126
W ++ P C ++D++ P ++L + R +
Sbjct: 61 LRCGWSPAEELNYTVPGPGPAGEASPRQCGRYEVDWNQSAFGCVDPLASL-DTNRSRLPL 119
Query: 127 RPCLQ-WTYDSSSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRK 185
PC + W Y++ G +I++E++LVC+NS + L + +G FG G ++D+FGRK
Sbjct: 120 GPCREGWVYETP--GSSIVTEFNLVCANSWMLDLFQASVNVGFFFGSVSIGYIADRFGRK 177
Query: 186 KALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIM 245
L+ +++ GVL+AISP + L+ R G + G++L E VG ++ +
Sbjct: 178 LCLLTTVLINAAAGVLMAISPTYTWMLIFRLIQGLVSKAGWLIGYILITEFVGRRYRRTV 237
Query: 246 GVMYLFPVPVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNK 305
G+ Y VG + ++G+AY +WR LQ+ +T+P FFL +W +PESPRWL+S +N
Sbjct: 238 GIFYQVAYTVGLLVLAGVAYALPHWRWLQFTVTLPNFFFLLYYWCIPESPRWLISQNKNA 297
Query: 306 EAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQ--VMDLWRTPLIRLISFVQ 363
EAM+I+ AK N + LP +L+ L E ++ G+K+ +DL RTP IR + +
Sbjct: 298 EAMRIIKHIAKKNGKSLPASLQCLRLE------EETGEKLNPSFLDLVRTPQIRKHTMIL 351
Query: 364 YIIWFSVYLVYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTT 423
WF+ ++Y GL++++ G ++YL+ S +VEFPA + I + ++GRR P +
Sbjct: 352 MYNWFTSSVLYQGLIMHMGLAGDNIYLDFFYSALVEFPAAFMIIVTIDRIGRRYPWAASN 411
Query: 424 LGAGLACLMTLGFAPG--SFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGAS 481
+ AG ACL ++ F PG ++ I ++ +G+ I+ + I+ + AEL+PT +RNLGV
Sbjct: 412 MVAGAACLASV-FIPGDLQWLKIIISCLGRMGITMAYEIVRLVNAELYPTFIRNLGVHIC 470
Query: 482 SVPAGVALILIPYL-WHMQSINIHFPMGLLGVVGVLGGLSVLLLPDTTG--LADNLHQLE 538
S + I+ P+L + + +I + P+ + GV+G++ G VLLLP+T G L + + + E
Sbjct: 471 SSMCDIGGIITPFLVYRLTNIWLELPLMVFGVLGLVAGGLVLLLPETKGKALPETIEEAE 530
Query: 539 N 539
N
Sbjct: 531 N 531
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Mediates tubular uptake of organic compounds from circulation. Mediates the influx of agmatine, dopamine, noradrenaline (norepinephrine), serotonin, choline, famotidine, ranitidine, histamin, creatinine, amantadine, memantine, acriflavine, 4-[4-(dimethylamino)-styryl]-N-methylpyridinium ASP, amiloride, metformin, N-1-methylnicotinamide (NMN), tetraethylammonium (TEA), 1-methyl-4-phenylpyridinium (MPP), cimetidine, cisplatin and oxaliplatin. Cisplatin may develop a nephrotoxic action. Transport of creatinine is inhibited by fluoroquinolones such as DX-619 and LVFX. This transporter is a major determinant of the anticancer activity of oxaliplatin and may contribute to antitumor specificity. Pongo abelii (taxid: 9601) |
| >sp|Q9Y226|S22AD_HUMAN Solute carrier family 22 member 13 OS=Homo sapiens GN=SLC22A13 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 242 bits (618), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 167/521 (32%), Positives = 264/521 (50%), Gaps = 29/521 (5%)
Query: 33 SAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIP-ASLSTLTLDQWKNL 91
+ IGDFG++Q QL + L +LN ++ FA F + C + T L + L
Sbjct: 9 AEIGDFGRFQIQLLILLCVLNFLSPFYFFAHVFMVLDEPHHCAVAWVKNHTFNLSAAEQL 68
Query: 92 S-----SISGVPYNPCNILD---LDYSLPYSTLLNIRRDVTAVRPC-LQWTYDSSSFGHT 142
+G P PC + + SL +L+ R + T +PC + W Y + +
Sbjct: 69 VLSVPLDTAGHP-EPCLMFRPPPANASL--QDILSHRFNET--QPCDMGWEYPENRL-PS 122
Query: 143 IISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLV 202
+ +E++LVC L+ + VF+ G+ G G + D+ GRK ++ L+ ++G+
Sbjct: 123 LKNEFNLVCDRKHLKDTTQSVFMAGLLVGTLMFGPLCDRIGRKATILAQLLLFTLIGLAT 182
Query: 203 AISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISG 262
A P FELY+ +RF + + FS L E VG W T V+ +G + ++G
Sbjct: 183 AFVPSFELYMALRFAVATAVAGLSFSNVTLLTEWVGPSWRTQAVVLAQCNFSLGQMVLAG 242
Query: 263 IAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKL 322
+AY NWRLLQ T P + +W +PES RWL++ GR EA++++ AA N RKL
Sbjct: 243 LAYGFRNWRLLQITGTAPGLLLFFYFWALPESARWLLTRGRMDEAIQLIQKAASVNRRKL 302
Query: 323 -PLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNL 381
P + +L+ E G +DL+R P +R ++ + + +WF L YYGL L +
Sbjct: 303 SPELMNQLVPE-------KTGPSGNALDLFRHPQLRKVTLIIFCVWFVDSLGYYGLSLQV 355
Query: 382 SNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSF 441
+ G DVYL +I G VE PA SIF++ + GR+ T + GL C++ + F P
Sbjct: 356 GDFGLDVYLTQLIFGAVEVPARCSSIFMMQRFGRKWSQLGTLVLGGLMCIIII-FIPADL 414
Query: 442 --ITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWHMQ 499
+ LA+VGK A +++ I +Y+AELFPT +R G+G + + + IL P + +
Sbjct: 415 PVVVTMLAVVGKMATAAAFTISYVYSAELFPTILRQTGMGLVGIFSRIGGILTPLVILLG 474
Query: 500 SINIHFPMGLLGVVGVLGGLSVLLLPDT--TGLADNLHQLE 538
+ PM + G + ++ GL LLP+T GL D L LE
Sbjct: 475 EYHAALPMLIYGSLPIVAGLLCTLLPETHGQGLKDTLQDLE 515
|
Homo sapiens (taxid: 9606) |
| >sp|O15244|S22A2_HUMAN Solute carrier family 22 member 2 OS=Homo sapiens GN=SLC22A2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 242 bits (617), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 167/541 (30%), Positives = 286/541 (52%), Gaps = 36/541 (6%)
Query: 24 PDVPEDVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTL 83
P +DV+ G+F +Q Q+ L+LL+ + F G + D C P
Sbjct: 2 PTTVDDVLEHG-GEFHFFQKQMFFLLALLSATFAPIYVGIVFLGFTPDHRCRSPGVAELS 60
Query: 84 TLDQWKNLSSISGVPYNP----------CNILDLDYSL-------PYSTLLNIRRDVTAV 126
W ++ P C ++D++ P ++L + R +
Sbjct: 61 LRCGWSPAEELNYTVPGPGPAGEASPRQCRRYEVDWNQSTFDCVDPLASL-DTNRSRLPL 119
Query: 127 RPCLQ-WTYDSSSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRK 185
PC W Y++ G +I++E++LVC+NS + L + +G G G ++D+FGRK
Sbjct: 120 GPCRDGWVYETP--GSSIVTEFNLVCANSWMLDLFQSSVNVGFFIGSMSIGYIADRFGRK 177
Query: 186 KALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIM 245
L+ +++ GVL+AISP + L+ R G + G++L E VG ++ +
Sbjct: 178 LCLLTTVLINAAAGVLMAISPTYTWMLIFRLIQGLVSKAGWLIGYILITEFVGRRYRRTV 237
Query: 246 GVMYLFPVPVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNK 305
G+ Y VG + ++G+AY +WR LQ+ +++P FFL +W +PESPRWL+S +N
Sbjct: 238 GIFYQVAYTVGLLVLAGVAYALPHWRWLQFTVSLPNFFFLLYYWCIPESPRWLISQNKNA 297
Query: 306 EAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQ--VMDLWRTPLIRLISFVQ 363
EAM+I+ AK N + LP +L++L E ++ GKK+ +DL RTP IR + +
Sbjct: 298 EAMRIIKHIAKKNGKSLPASLQRLRLE------EETGKKLNPSFLDLVRTPQIRKHTMIL 351
Query: 364 YIIWFSVYLVYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTT 423
WF+ ++Y GL++++ G ++YL+ S +VEFPA + I + ++GRR P +
Sbjct: 352 MYNWFTSSVLYQGLIMHMGLAGDNIYLDFFYSALVEFPAAFMIILTIDRIGRRYPWAASN 411
Query: 424 LGAGLACLMTLGFAPG--SFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGAS 481
+ AG ACL ++ F PG ++ I ++ +G+ I+ + I+ + AEL+PT +RNLGV
Sbjct: 412 MVAGAACLASV-FIPGDLQWLKIIISCLGRMGITMAYEIVCLVNAELYPTFIRNLGVHIC 470
Query: 482 SVPAGVALILIPYL-WHMQSINIHFPMGLLGVVGVLGGLSVLLLPDTTG--LADNLHQLE 538
S + I+ P+L + + +I + P+ + GV+G++ G VLLLP+T G L + + + E
Sbjct: 471 SSMCDIGGIITPFLVYRLTNIWLELPLMVFGVLGLVAGGLVLLLPETKGKALPETIEEAE 530
Query: 539 N 539
N
Sbjct: 531 N 531
|
Mediates tubular uptake of organic compounds from circulation. Mediates the influx of agmatine, dopamine, noradrenaline (norepinephrine), serotonin, choline, famotidine, ranitidine, histamin, creatinine, amantadine, memantine, acriflavine, 4-[4-(dimethylamino)-styryl]-N-methylpyridinium ASP, amiloride, metformin, N-1-methylnicotinamide (NMN), tetraethylammonium (TEA), 1-methyl-4-phenylpyridinium (MPP), cimetidine, cisplatin and oxaliplatin. Cisplatin may develop a nephrotoxic action. Transport of creatinine is inhibited by fluoroquinolones such as DX-619 and LVFX. This transporter is a major determinant of the anticancer activity of oxaliplatin and may contribute to antitumor specificity. Homo sapiens (taxid: 9606) |
| >sp|O15245|S22A1_HUMAN Solute carrier family 22 member 1 OS=Homo sapiens GN=SLC22A1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 242 bits (617), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 165/535 (30%), Positives = 276/535 (51%), Gaps = 33/535 (6%)
Query: 29 DVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTLTLDQW 88
D I +G+ G +Q Q L L LL+ + F G + D C P W
Sbjct: 5 DDILEQVGESGWFQKQAFLILCLLSAAFAPICVGIVFLGFTPDHHCQSPGVAELSQRCGW 64
Query: 89 KNLSSIS-GVP---------YNPCNILDLDYSL-------PYSTLLNIRRDVTAVRPCLQ 131
++ VP C ++D++ P ++L R + + PC
Sbjct: 65 SPAEELNYTVPGLGPAGEAFLGQCRRYEVDWNQSALSCVDPLASLATNRSHL-PLGPCQD 123
Query: 132 -WTYDSSSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMG 190
W YD+ G +I++E++LVC++S L + G FG G +D+FGRK L+G
Sbjct: 124 GWVYDTP--GSSIVTEFNLVCADSWKLDLFQSCLNAGFLFGSLGVGYFADRFGRKLCLLG 181
Query: 191 SLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYL 250
+++ V GVL+A SP + L+ R G +G+ L E VG + +MY
Sbjct: 182 TVLVNAVSGVLMAFSPNYMSMLLFRLLQGLVSKGNWMAGYTLITEFVGSGSRRTVAIMYQ 241
Query: 251 FPVPVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKI 310
VG +A++G+AY +WR LQ +++PT FL +W +PESPRWL+S RN EA+KI
Sbjct: 242 MAFTVGLVALTGLAYALPHWRWLQLAVSLPTFLFLLYYWCVPESPRWLLSQKRNTEAIKI 301
Query: 311 LGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKV--QVMDLWRTPLIRLISFVQYIIWF 368
+ A+ N + P +L+ +LS +DV +K+ DL+RTP +R +F+ +WF
Sbjct: 302 MDHIAQKNGKLPPADLK------MLSLEEDVTEKLSPSFADLFRTPRLRKRTFILMYLWF 355
Query: 369 SVYLVYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGL 428
+ ++Y GL+L++ G++YL+ + S +VE P I++ + ++GR P+ ++ L AG
Sbjct: 356 TDSVLYQGLILHMGATSGNLYLDFLYSALVEIPGAFIALITIDRVGRIYPMAMSNLLAGA 415
Query: 429 ACLMTLGFAPG-SFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGV 487
ACL+ + +P ++ I + VG+ I+ + +I + AEL+PT +RNLGV S +
Sbjct: 416 ACLVMIFISPDLHWLNIIIMCVGRMGITIAIQMICLVNAELYPTFVRNLGVMVCSSLCDI 475
Query: 488 ALILIPYL-WHMQSINIHFPMGLLGVVGVLGGLSVLLLPDTTGLA--DNLHQLEN 539
I+ P++ + ++ + P+ L V+G+L LLLP+T G+A + + EN
Sbjct: 476 GGIITPFIVFRLREVWQALPLILFAVLGLLAAGVTLLLPETKGVALPETMKDAEN 530
|
Translocates a broad array of organic cations with various structures and molecular weights including the model compounds 1-methyl-4-phenylpyridinium (MPP), tetraethylammonium (TEA), N-1-methylnicotinamide (NMN), 4-(4-(dimethylamino)styryl)-N-methylpyridinium (ASP), the endogenous compounds choline, guanidine, histamine, epinephrine, adrenaline, noradrenaline and dopamine, and the drugs quinine, and metformin. The transport of organic cations is inhibited by a broad array of compounds like tetramethylammonium (TMA), cocaine, lidocaine, NMDA receptor antagonists, atropine, prazosin, cimetidine, TEA and NMN, guanidine, cimetidine, choline, procainamide, quinine, tetrabutylammonium, and tetrapentylammonium. Translocates organic cations in an electrogenic and pH-independent manner. Translocates organic cations across the plasma membrane in both directions. Transports the polyamines spermine and spermidine. Transports pramipexole across the basolateral membrane of the proximal tubular epithelial cells. The choline transport is activated by MMTS. Regulated by various intracellular signaling pathways including inhibition by protein kinase A activation, and endogenously activation by the calmodulin complex, the calmodulin-dependent kinase II and LCK tyrosine kinase. Homo sapiens (taxid: 9606) |
| >sp|A7MBE0|S22A1_BOVIN Solute carrier family 22 member 1 OS=Bos taurus GN=SLC22A1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 240 bits (612), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 170/532 (31%), Positives = 275/532 (51%), Gaps = 32/532 (6%)
Query: 29 DVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIP--ASLSTL--- 83
D + +G+FG +Q Q L L LL+ + F + D C P A LS
Sbjct: 5 DDVLEQVGEFGWFQKQTFLILCLLSAAFAPIYVGIVFLAFTPDHRCRSPGVAELSRRCGW 64
Query: 84 TLDQWKNLSSISGVPYNPCNILDLDYSLPYSTL--------LNIRRDVTAVRPCLQ-WTY 134
+L + N + P + C ++D++ STL L + PC Q W Y
Sbjct: 65 SLAEELNYTVPGPGPESQCLRYEVDWN--QSTLGCLDPLASLATNGSPLPLGPCEQGWVY 122
Query: 135 DSSSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVF 194
D+ G +I++E++LVC +S L + LG G G ++D+FGRK L+ + +
Sbjct: 123 DTP--GSSIVTEFNLVCDDSWKVDLFQSCVNLGFFLGSLGVGYIADRFGRKVCLLATTLT 180
Query: 195 QLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVP 254
LGVL A++P + L+ R G +G+ L E VG + + ++Y
Sbjct: 181 CASLGVLTAVAPDYTSLLIFRLLQGLVSKGSWTAGYTLITEFVGLGYRRTVAILYQMAFT 240
Query: 255 VGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDA 314
VG + +SG+AY +WR LQ +++P L +W +PESPRWL+S RN EA+KI+
Sbjct: 241 VGLVLLSGLAYILPHWRWLQLAVSLPIFLLLFRFWFVPESPRWLLSQKRNTEAIKIMDHI 300
Query: 315 AKFNSRKLPLNLEKLLKESVLSTNQDVGKKV--QVMDLWRTPLIRLISFVQYIIWFSVYL 372
A+ N + P +L+ +LS +DV +K+ +DL+RTP +R +F+ +WF+ +
Sbjct: 301 AQKNGKLPPADLK------MLSLEEDVTEKLSPSFIDLFRTPNLRKYTFILMYLWFTSSV 354
Query: 373 VYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLM 432
VY GL++++ GG++YL+ + S +VEFPA I + + + GRR PL + L AGLAC +
Sbjct: 355 VYQGLIMHVGATGGNLYLDFLYSALVEFPAGFIILVTIDRFGRRYPLATSNLAAGLACFL 414
Query: 433 TLGFAPGSF--ITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALI 490
+ F P + I +A VG+ I+ ++ + AELFPT +RNLG+ S + +
Sbjct: 415 MI-FIPHDLPWLNIMVACVGRMGITIVFQMVCLVNAELFPTFIRNLGMMVCSSLCDLGGV 473
Query: 491 LIPYL-WHMQSINIHFPMGLLGVVGVLGGLSVLLLPDTTG--LADNLHQLEN 539
L P+L + + + P+ L +G++ G LLLP+T G L + + EN
Sbjct: 474 LTPFLVFRLMEVWQGSPLILFAALGLVAGGMTLLLPETKGVTLPETIEDAEN 525
|
Translocates a broad array of organic cations with various structures and molecular weights including the model compounds 1-methyl-4-phenylpyridinium (MPP), tetraethylammonium (TEA), N-1-methylnicotinamide (NMN), 4-(4-(dimethylamino)styryl)-N-methylpyridinium (ASP), the endogenous compounds choline, guanidine, histamine, epinephrine, adrenaline, noradrenaline and dopamine, and the drugs quinine, and metformin. The transport of organic cations is inhibited by a broad array of compounds like tetramethylammonium (TMA), cocaine, lidocaine, NMDA receptor antagonists, atropine, prazosin, cimetidine, TEA and NMN, guanidine, cimetidine, choline, procainamide, quinine, tetrabutylammonium, and tetrapentylammonium. Translocates organic cations in an electrogenic and pH-independent manner. Translocates organic cations across the plasma membrane in both directions. Transports the polyamines spermine and spermidine. Transports pramipexole across the basolateral membrane of the proximal tubular epithelial cells. The choline transport is activated by MMTS. Regulated by various intracellular signaling pathways including inhibition by protein kinase A activation, and endogenously activation by the calmodulin complex, the calmodulin-dependent kinase II and LCK tyrosine kinase. Bos taurus (taxid: 9913) |
| >sp|O02713|S22A2_PIG Solute carrier family 22 member 2 OS=Sus scrofa GN=SLC22A2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 240 bits (612), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 167/537 (31%), Positives = 274/537 (51%), Gaps = 37/537 (6%)
Query: 29 DVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTLTLDQW 88
D I G+F +Q Q L+LL+ T + F G D C P W
Sbjct: 5 DDILEHTGEFNFFQKQTFFLLALLSAAFTPIYVGIVFLGFIPDHRCRSPGVAELSQRCGW 64
Query: 89 KNLSSISGVPYNP----------CNILDLDYSLPYSTL--------LNIRRDVTAVRPC- 129
++ P C ++D++ STL L + PC
Sbjct: 65 SLAEELNYTVPGPGPAGQAFPRQCRRYEVDWN--QSTLGCVDPLAGLAANSSHLPLGPCR 122
Query: 130 LQWTYDSSSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALM 189
W YD+ G +I++E+DLVC+NS L L + +G G G ++D+FGRK L+
Sbjct: 123 YGWVYDTP--GSSIVTEFDLVCANSWLLDLFQSAVNVGFFIGSVGIGYIADRFGRKLCLL 180
Query: 190 GSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMY 249
+++ V GVL+AISP + LV R G + G++L E VG + +G+ Y
Sbjct: 181 LTILINAVSGVLMAISPTYTWMLVFRLIQGLVSKAGWMIGYILITEFVGLSYRRTVGIFY 240
Query: 250 LFPVPVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMK 309
G + ++G+AY +WR LQ+ +T+P FL +W +PESPRWL+S +N +AM
Sbjct: 241 QVAFTFGLLVLAGVAYALPHWRWLQFTVTLPNFCFLFYYWCVPESPRWLISQNKNAKAMS 300
Query: 310 ILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQ--VMDLWRTPLIRLISFVQYIIW 367
I+ AK N + LP +L+ L +++VG+K++ +DL RTP IR + + W
Sbjct: 301 IIKHIAKKNGKSLPASLQS------LRPDEEVGEKLKPSFLDLVRTPQIRKHTLILMYNW 354
Query: 368 FSVYLVYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAG 427
F+ ++Y GLV+++ G ++YL+ S +VEFPA ++ + + ++GRR P + + AG
Sbjct: 355 FTSAVLYQGLVMHMGLAGSNLYLDFFYSALVEFPAALLILLTIDRLGRRHPWAASNVVAG 414
Query: 428 LACLMTLGFAPGS--FITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPA 485
ACL ++ F P ++ I++ +G+ I+ + ++ + AEL+PT +RNLGV S
Sbjct: 415 AACLASV-FIPEDPHWLRITVLCLGRMGITMAYEMVCLVNAELYPTFIRNLGVLVCSSMC 473
Query: 486 GVALILIPYL-WHMQSINIHFPMGLLGVVGVLGGLSVLLLPDTTG--LADNLHQLEN 539
+ I+ P+L + + I P+ + VVG++ G VLLLP+T G L + + + E
Sbjct: 474 DIGGIITPFLVYRLTDIWHELPLVVFAVVGLIAGGLVLLLPETKGKTLPETIEEAET 530
|
Mediates tubular uptake of organic compounds from circulation. Mediates the influx of agmatine, dopamine, noradrenaline (norepinephrine), serotonin, choline, famotidine, ranitidine, histamin, creatinine, amantadine, memantine, acriflavine, 4-[4-(dimethylamino)-styryl]-N-methylpyridinium ASP, amiloride, metformin, N-1-methylnicotinamide (NMN), tetraethylammonium (TEA), 1-methyl-4-phenylpyridinium (MPP), cimetidine, cisplatin and oxaliplatin. Cisplatin may develop a nephrotoxic action. Transport of creatinine is inhibited by fluoroquinolones such as DX-619 and LVFX. This transporter is a major determinant of the anticancer activity of oxaliplatin and may contribute to antitumor specificity. Sus scrofa (taxid: 9823) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 565 | ||||||
| 328723345 | 599 | PREDICTED: organic cation transporter pr | 0.946 | 0.893 | 0.582 | 1e-176 | |
| 328723349 | 609 | PREDICTED: organic cation transporter pr | 0.923 | 0.857 | 0.585 | 1e-175 | |
| 242006464 | 549 | organic cation transporter, putative [Pe | 0.922 | 0.948 | 0.532 | 1e-163 | |
| 91077168 | 532 | PREDICTED: similar to CG6006 CG6006-PC [ | 0.892 | 0.947 | 0.476 | 1e-138 | |
| 347969116 | 625 | AGAP013029-PA [Anopheles gambiae str. PE | 0.874 | 0.790 | 0.424 | 1e-112 | |
| 198454757 | 605 | GA26232, isoform A [Drosophila pseudoobs | 0.883 | 0.824 | 0.418 | 1e-110 | |
| 195157116 | 565 | GL12224 [Drosophila persimilis] gi|19411 | 0.881 | 0.881 | 0.422 | 1e-109 | |
| 390179268 | 566 | GA26232, isoform B [Drosophila pseudoobs | 0.881 | 0.879 | 0.419 | 1e-109 | |
| 194901220 | 564 | GG16983 [Drosophila erecta] gi|190651853 | 0.876 | 0.877 | 0.428 | 1e-109 | |
| 195452120 | 582 | GK13265 [Drosophila willistoni] gi|19416 | 0.870 | 0.845 | 0.433 | 1e-109 |
| >gi|328723345|ref|XP_003247821.1| PREDICTED: organic cation transporter protein-like isoform 2 [Acyrthosiphon pisum] gi|328723347|ref|XP_001944418.2| PREDICTED: organic cation transporter protein-like isoform 1 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 322/553 (58%), Positives = 411/553 (74%), Gaps = 18/553 (3%)
Query: 3 SNNNTVGILNVAVSTQTDPYTPDVPEDVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFA 62
S N TV NV V + D T ED ++ AIG+FG+WQ LTL LSLLN+PCTWHIF
Sbjct: 21 SKNYTVE-RNVGV-FKDDKRTEKTHEDPVSMAIGEFGRWQAMLTLILSLLNLPCTWHIFV 78
Query: 63 LTFQGASQDFWCTIPAS-LSTLTLDQWKNLSSI------SGVP-YNPCNILDLDYS---- 110
LTFQGA DFWCT P L+ +++D+WKNLS + S V Y+PC+ D DY
Sbjct: 79 LTFQGADTDFWCTPPPGVLNRISVDEWKNLSGVIPESPTSNVSVYDPCHYRDFDYESLLS 138
Query: 111 -LPYSTLLNIRRDVTAVRPCLQWTYDSSSFGHTIISEWDLVCSNSSLESLAEMVFLLGVA 169
Y+ LL + D ++ C W ++++ FG TI SEW+LVC L++ AEM+FL+GVA
Sbjct: 139 KFSYTELLKNKTDQYELKTCASWQFNTTEFGDTITSEWNLVCDRKELKNFAEMMFLMGVA 198
Query: 170 FGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSG 229
FGGFFSGLVSD+FGRKK LM SL+ QL LG+LVAI PWFE YLV+RF LGF CVSIVFSG
Sbjct: 199 FGGFFSGLVSDRFGRKKTLMASLIMQLALGILVAICPWFEFYLVLRFILGFVCVSIVFSG 258
Query: 230 FVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWW 289
FVLCMELVGGKWLTI GV+YL PVP+ YI ISGIAY WRLLQW +T+P +FFL L W
Sbjct: 259 FVLCMELVGGKWLTIAGVLYLLPVPMSYIIISGIAYICRGWRLLQWCVTLPAVFFLVLHW 318
Query: 290 IMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMD 349
+PESPRWL++MGR E M++L A+K N LP+N++K+LK+S+ + KV+V D
Sbjct: 319 FVPESPRWLLAMGRVDETMEVLEKASKINKHPLPVNMDKILKQSINKFEINGKPKVRVSD 378
Query: 350 LWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFI 409
L+RT IR IS V YI+WFS+YLVYYGLVLNLSNIGG++Y+NTIISG+VE PAI+IS+ I
Sbjct: 379 LFRTKNIRKISLVLYILWFSLYLVYYGLVLNLSNIGGNIYINTIISGLVEIPAILISVVI 438
Query: 410 LLKMGRRRPLCLTTLGAGLACLMT--LGFAPGSFITISLAMVGKFAISSSNVIIPIYTAE 467
LLKMGRR PLCLT + G+ACL+T L +I++SL M GKF++SSSNVI+P+YTAE
Sbjct: 439 LLKMGRRIPLCLTMVAGGIACLLTTILPADTDEWISLSLVMAGKFSVSSSNVIMPLYTAE 498
Query: 468 LFPTKMRNLGVGASSVPAGVALILIPYLWHMQSINIHFPMGLLGVVGVLGGLSVLLLPDT 527
LFPT +RNLGVG S++PAG+ALI++PYLW++ ++ P+ +LG V V+GGLSVL+LP+T
Sbjct: 499 LFPTVIRNLGVGTSNIPAGIALIMVPYLWNLSPLSKVLPLLVLGTVSVIGGLSVLMLPET 558
Query: 528 -TGLADNLHQLEN 539
+ L+D L ++E+
Sbjct: 559 GSYLSDTLEEVED 571
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328723349|ref|XP_003247822.1| PREDICTED: organic cation transporter protein-like isoform 3 [Acyrthosiphon pisum] gi|328723351|ref|XP_003247823.1| PREDICTED: organic cation transporter protein-like isoform 4 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 315/538 (58%), Positives = 404/538 (75%), Gaps = 16/538 (2%)
Query: 18 QTDPYTPDVPEDVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIP 77
+ D T ED ++ AIG+FG+WQ LTL LSLLN+PCTWHIF LTFQGA DFWCT P
Sbjct: 44 KDDKRTEKTHEDPVSMAIGEFGRWQAMLTLILSLLNLPCTWHIFVLTFQGADTDFWCTPP 103
Query: 78 AS-LSTLTLDQWKNLSSI------SGVP-YNPCNILDLDYS-----LPYSTLLNIRRDVT 124
L+ +++D+WKNLS + S V Y+PC+ D DY Y+ LL + D
Sbjct: 104 PGVLNRISVDEWKNLSGVIPESPTSNVSVYDPCHYRDFDYESLLSKFSYTELLKNKTDQY 163
Query: 125 AVRPCLQWTYDSSSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGR 184
++ C W ++++ FG TI SEW+LVC L++ AEM+FL+GVAFGGFFSGLVSD+FGR
Sbjct: 164 ELKTCASWQFNTTEFGDTITSEWNLVCDRKELKNFAEMMFLMGVAFGGFFSGLVSDRFGR 223
Query: 185 KKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTI 244
KK LM SL+ QL LG+LVAI PWFE YLV+RF LGF CVSIVFSGFVLCMELVGGKWLTI
Sbjct: 224 KKTLMASLIMQLALGILVAICPWFEFYLVLRFILGFVCVSIVFSGFVLCMELVGGKWLTI 283
Query: 245 MGVMYLFPVPVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRN 304
GV+YL PVP+ YI ISGIAY WRLLQW +T+P +FFL L W +PESPRWL++MGR
Sbjct: 284 AGVLYLLPVPMSYIIISGIAYICRGWRLLQWCVTLPAVFFLVLHWFVPESPRWLLAMGRV 343
Query: 305 KEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQY 364
E M++L A+K N LP+N++K+LK+S+ + KV+V DL+RT IR IS V Y
Sbjct: 344 DETMEVLEKASKINKHPLPVNMDKILKQSINKFEINGKPKVRVSDLFRTKNIRKISLVLY 403
Query: 365 IIWFSVYLVYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTL 424
I+WFS+YLVYYGLVLNLSNIGG++Y+NTIISG+VE PAI+IS+ ILLKMGRR PLCLT +
Sbjct: 404 ILWFSLYLVYYGLVLNLSNIGGNIYINTIISGLVEIPAILISVVILLKMGRRIPLCLTMV 463
Query: 425 GAGLACLMT--LGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASS 482
G+ACL+T L +I++SL M GKF++SSSNVI+P+YTAELFPT +RNLGVG S+
Sbjct: 464 AGGIACLLTTILPADTDEWISLSLVMAGKFSVSSSNVIMPLYTAELFPTVIRNLGVGTSN 523
Query: 483 VPAGVALILIPYLWHMQSINIHFPMGLLGVVGVLGGLSVLLLPDT-TGLADNLHQLEN 539
+PAG+ALI++PYLW++ ++ P+ +LG V V+GGLSVL+LP+T + L+D L ++E+
Sbjct: 524 IPAGIALIMVPYLWNLSPLSKVLPLLVLGTVSVIGGLSVLMLPETGSYLSDTLEEVED 581
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242006464|ref|XP_002424070.1| organic cation transporter, putative [Pediculus humanus corporis] gi|212507376|gb|EEB11332.1| organic cation transporter, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust.
Identities = 287/539 (53%), Positives = 386/539 (71%), Gaps = 18/539 (3%)
Query: 3 SNNNTVGILNVAVSTQTDPYTPDVPEDVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFA 62
S N ++++ +T+ Y +DVI+ IGDFGKWQ LT FL+L N+PCTWHI+A
Sbjct: 2 STNIGRDVVSIEETTKQQNYDN---QDVISKIIGDFGKWQLHLTFFLALFNLPCTWHIYA 58
Query: 63 LTFQGASQDFWCTIPASLSTLTLDQWKNLSSI------SGVPYNPCNILDLDY-SLPYST 115
+TFQ +FWC P L L+LD+W+N+S S YNPC I D++Y + Y
Sbjct: 59 MTFQAPDVEFWCAPPKELQWLSLDEWRNISHTPSLNHHSKYDYNPCLIWDVNYLNFTYDE 118
Query: 116 LLN--IRRDVTAVRPCLQWTYDSSSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGF 173
L+N + VR C +W Y+ +++S+W+LVC +L+ AEMVFL GVA GG
Sbjct: 119 LINSNFQHQNVGVRHCEKWIYNEIQNSVSLVSQWNLVCERKTLKETAEMVFLAGVAIGGL 178
Query: 174 FSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLC 233
SG++SD+FGRKK LM SL+ Q+++GVL+A PW E +LV+RF LGF VS+VFSGFVLC
Sbjct: 179 VSGIISDRFGRKKTLMSSLLLQIIVGVLMAFIPWIEFFLVLRFLLGFISVSVVFSGFVLC 238
Query: 234 MELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMPE 293
MELVGGKW TI GV YLFPVP+ YI +GIAY+ H WR +Q I++P I L LWW++PE
Sbjct: 239 MELVGGKWRTISGVSYLFPVPLSYIIFAGIAYFIHGWREIQLAISLPGILLLGLWWVLPE 298
Query: 294 SPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQ---VMDL 350
SPRWL++M + E ++IL +AAK N L N++KLL+++ ++ +D KK Q ++DL
Sbjct: 299 SPRWLLTMKKIDENVEILKEAAKMNKLDLTQNIDKLLQQT--TSGEDKTKKNQNVGILDL 356
Query: 351 WRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFIL 410
+R P IR S + Y+IWFSVY VY+GL++NLS+IGGD+Y+NTI+SG+VE P+I +SI IL
Sbjct: 357 FRYPNIRKKSLLLYVIWFSVYFVYFGLIMNLSHIGGDIYINTILSGLVEIPSIALSIIIL 416
Query: 411 LKMGRRRPLCLTTLGAGLACLMTLGFAPG-SFITISLAMVGKFAISSSNVIIPIYTAELF 469
LKMGRR PLCLT LG G+ACLMTL F +TI+LAM GKF+I+SSN I P+YTAELF
Sbjct: 417 LKMGRRWPLCLTFLGGGIACLMTLFFGEDRETVTITLAMFGKFSIASSNAIAPVYTAELF 476
Query: 470 PTKMRNLGVGASSVPAGVALILIPYLWHMQSINIHFPMGLLGVVGVLGGLSVLLLPDTT 528
PT +RNLGVG+S+V AG+AL+L+PYLW++ SI+ PM LLGV G++GG+SVL L +T+
Sbjct: 477 PTVIRNLGVGSSNVAAGLALVLVPYLWNLASIDFRLPMTLLGVFGIVGGVSVLFLEETS 535
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91077168|ref|XP_972002.1| PREDICTED: similar to CG6006 CG6006-PC [Tribolium castaneum] gi|270001712|gb|EEZ98159.1| hypothetical protein TcasGA2_TC000585 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 248/520 (47%), Positives = 353/520 (67%), Gaps = 16/520 (3%)
Query: 28 EDVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTLTLDQ 87
EDV+++AIG+FG+WQ +T LSL NIPCTWHIF TF A ++ WC+ P + +
Sbjct: 16 EDVVSTAIGEFGRWQLLMTFLLSLFNIPCTWHIFVPTFHAAERETWCSRPKAFQDVAPSL 75
Query: 88 WKNLSSISGVPYNPCNILDLDYSLPYSTLLNIRRDVTAVRPCLQWTYDSSSFGHTIISEW 147
W+N + P C I DL ++ + L + + + PC +W + G T+ SE+
Sbjct: 76 WRNFTQ----PEGFCKIYDLA-NVTEADLPRLAQMGRKLVPCKEWEFGGE--GSTLTSEF 128
Query: 148 DLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPW 207
DLVC +L ++AEM+FL GVA GG G++SDK+GRKK LM S++ Q +LGV++A +PW
Sbjct: 129 DLVCDRKTLNNIAEMMFLGGVAIGGLVCGILSDKYGRKKTLMASVLLQTILGVIIAFAPW 188
Query: 208 FELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS 267
FE+Y ++R LGF VS+VFSGFVL +ELVGG W T+ G+ YLFPV + YI I+G+ Y
Sbjct: 189 FEMYFILRAALGFISVSVVFSGFVLSIELVGGNWRTVAGISYLFPVSLSYITIAGMGYLL 248
Query: 268 HNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLE 327
+WR LQ I++P FL LWW++PESPRWL++MGR E M IL A+ +N ++LP+N++
Sbjct: 249 RDWRELQLAISLPGCVFLILWWVLPESPRWLLAMGRTNEVMTILQRASNWNKKELPINID 308
Query: 328 KLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIGGD 387
K L + + + V VMDL++T +R + + ++IWFSVYLVYYGLVLNL NIGGD
Sbjct: 309 KQL---LPCESDSETEPVSVMDLFKTRQMRKKTLLLFVIWFSVYLVYYGLVLNLGNIGGD 365
Query: 388 VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGS----FIT 443
+Y+N+I+SG VE PA+ +SI ILLK GRR PL LT + +G AC T+ S ++
Sbjct: 366 LYINSILSGSVEIPAVALSILILLKGGRRWPLALTMILSGAACGCTIPIDLASDNLQWVI 425
Query: 444 ISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWHMQSINI 503
+LAM+ +F+ISSSN IIP++TAEL+PT +RN+GVGAS+V AG+AL+L+PYLW M +++
Sbjct: 426 TTLAMMSRFSISSSNAIIPVFTAELYPTIIRNIGVGASNVSAGIALMLVPYLWEMANVHP 485
Query: 504 HFPMGLLGVVGVLGGLSVLLLPDTTG--LADNLHQLENDV 541
PM +L G++GG VL LP+T L D L + +++
Sbjct: 486 SVPMSILAACGIIGGACVLFLPETGSKPLKDTLEEEASEI 525
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|347969116|ref|XP_003436361.1| AGAP013029-PA [Anopheles gambiae str. PEST] gi|333467691|gb|EGK96652.1| AGAP013029-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 217/511 (42%), Positives = 317/511 (62%), Gaps = 17/511 (3%)
Query: 25 DVPEDVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTLT 84
D D+I IGD+GKWQF +T LSL +P T+HI++ TFQ A + FWC P L +
Sbjct: 109 DEESDIIGELIGDYGKWQFVMTFLLSLFQVPNTFHIYSPTFQAADKSFWCRRPTHLDDVP 168
Query: 85 LDQWKNLSSISGVPYNPCNILDLDYSLPYSTLLNIR-----RDVTAVRPCLQWTYD-SSS 138
+D+W+N+SS C +L+ D++ S L++ ++VT C W +D +
Sbjct: 169 IDRWRNVSS----SVENCRMLNYDWNALTSAQLSMSNFSLPKNVTDTVACSAWEFDVHDN 224
Query: 139 FGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVL 198
G+T SEW+LVC L+++AEM FL GVA GG SG++SDKFGRK L S V Q +
Sbjct: 225 LGNTWSSEWNLVCDKEYLKNVAEMFFLAGVATGGITSGVLSDKFGRKMMLFISAVLQSIF 284
Query: 199 GVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYI 258
G+ + + FE YLV+R LG VS+ ++G +L +E V GKW TI G+ LFP+PV YI
Sbjct: 285 GLALYFADSFEFYLVLRALLGIVSVSVTYAGLILAIEYVDGKWRTIAGMYNLFPLPVSYI 344
Query: 259 AISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFN 318
ISGIAY + ++R LQ I +P +F LW+++PESPRWL+ GR E +++ AA FN
Sbjct: 345 MISGIAYLTQDYRNLQLCIGLPGVFLCLLWFVLPESPRWLLCKGRITEVKEVIRKAAAFN 404
Query: 319 SRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLV 378
R LP NL+KLLK V G V +L+R+ +RL++F IWF++ LVYYGLV
Sbjct: 405 KRPLPDNLDKLLKPPVDEEETAAG----VCELFRSKYLRLVTFCFLCIWFTMNLVYYGLV 460
Query: 379 LNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLT---TLGAGLACLMTLG 435
LN+++ GG++YLN+ ++G+VE PAI ++++I+ + G++ C T A L + G
Sbjct: 461 LNMNSFGGNIYLNSALAGLVEIPAIALAMYIINRTGKKWLFCATFFAAALACLCAAIVEG 520
Query: 436 FAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495
+ I+ M+GKF IS+ N I+P+YTAEL+PT +RN+GVGA ++ AG AL+L PYL
Sbjct: 521 KPELLAMKITFVMIGKFTISAGNTIMPVYTAELYPTAIRNVGVGACNLAAGFALVLTPYL 580
Query: 496 WHMQSINIHFPMGLLGVVGVLGGLSVLLLPD 526
+ I +H M LL + G + ++ LP+
Sbjct: 581 SLLTKIEVHLLMTLLTAWCIFGAIVIIFLPE 611
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|198454757|ref|XP_002137941.1| GA26232, isoform A [Drosophila pseudoobscura pseudoobscura] gi|198132940|gb|EDY68499.1| GA26232, isoform A [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 217/518 (41%), Positives = 319/518 (61%), Gaps = 19/518 (3%)
Query: 20 DPYTPDVPEDVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPAS 79
+P + DVI +G +GKWQ +T+ LSL +P T+HI + +Q A++DFWC P
Sbjct: 74 NPAEDEDETDVIGDLMGHYGKWQLLMTVLLSLFQVPNTFHISSSVYQAANKDFWCQRPLE 133
Query: 80 LSTLTLDQWKNLSSISGVPYNPCNILDLDYS-LPYSTLLNIRRDVTA----VRPCLQWTY 134
L + +D+W+NLS G N + +S L T L +V A + C W Y
Sbjct: 134 LQQMPVDEWRNLS---GSNDNCHRWEGIGWSSLANDTTLQEAAEVVASVGNLVACESWEY 190
Query: 135 DS-SSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLV 193
++ + G+T SEWDLVC L+++AEM FLLGVA GG SG +SDKFGRK L S +
Sbjct: 191 ETHDNVGNTWTSEWDLVCDKEHLKNVAEMFFLLGVATGGIISGYLSDKFGRKTMLFISAI 250
Query: 194 FQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPV 253
Q + G+ + FELYL +R LG VS+ +S +L +E V GKW TI G+ LFP+
Sbjct: 251 LQTIFGLCLYFCSSFELYLTLRALLGLVSVSVTYSALILAIEYVDGKWRTIAGMYNLFPL 310
Query: 254 PVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGD 313
P+ Y+ ISG+AY + +++ LQ I +P IF LW+++PESPRWL+ GR E +I+
Sbjct: 311 PISYMIISGLAYLTQDYQALQLCIGLPGIFLCFLWFVVPESPRWLLVKGRVDEVRRIIEA 370
Query: 314 AAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLV 373
AAKFN R+LP++ + L + S++Q+ + L+R+ +R I+ IWF++ LV
Sbjct: 371 AAKFNGRQLPVDYQ-LTPPTQESSSQN------ITHLFRSSYLRRITICFLCIWFTMNLV 423
Query: 374 YYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACL-- 431
YYG++LN+S+ GG+VYLN+ ++G+VE PAI ++++I+ K+G++ C T AG+AC
Sbjct: 424 YYGIILNMSSFGGNVYLNSALAGLVEIPAIAVAMYIITKVGKKWLFCATLFCAGVACFCA 483
Query: 432 -MTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALI 490
+T G ++ I+ M+GKF IS+ N I+P+YTAEL+PT +RN+GVGA +V AG+ALI
Sbjct: 484 TITEGREDILWLKITFLMMGKFTISAGNTIMPVYTAELYPTAIRNVGVGACNVAAGLALI 543
Query: 491 LIPYLWHMQSINIHFPMGLLGVVGVLGGLSVLLLPDTT 528
L PY+ + I H M LL + GG VL LP T
Sbjct: 544 LTPYISLLNKIEGHLLMALLTAWSIFGGFVVLFLPATA 581
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195157116|ref|XP_002019442.1| GL12224 [Drosophila persimilis] gi|194116033|gb|EDW38076.1| GL12224 [Drosophila persimilis] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 218/516 (42%), Positives = 319/516 (61%), Gaps = 18/516 (3%)
Query: 20 DPYTPDVPEDVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPAS 79
+P + DVI +G +GKWQ +T+ LSL +P T+HI + +Q A++DFWC P
Sbjct: 35 NPAEDEDETDVIGDLMGHYGKWQLLMTVLLSLFQVPNTFHISSSVYQAANKDFWCQRPLE 94
Query: 80 LSTLTLDQWKNLSSISGVPYNPCNILDLDYS-LPYSTLLNIRRDVTA---VRPCLQWTYD 135
L + +D+W+NLS G N + +S L T L RR A + C W Y+
Sbjct: 95 LQQMPVDEWRNLS---GSNDNCHRWEGIGWSSLANDTTLQERRWSPAWGNLVACESWEYE 151
Query: 136 S-SSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVF 194
+ + G+T SEWDLVC L+++AEM FLLGVA GG SG +SDKFGRK L S +
Sbjct: 152 THDNVGNTWTSEWDLVCDKEHLKNVAEMFFLLGVATGGIISGYLSDKFGRKTMLFISAIL 211
Query: 195 QLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVP 254
Q + G+ + FELYL +R LG VS+ +S +L +E V GKW TI G+ LFP+P
Sbjct: 212 QTIFGLCLYFCSSFELYLTLRALLGLVSVSVTYSALILAIEYVDGKWRTIAGMYNLFPLP 271
Query: 255 VGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDA 314
+ Y+ ISG+AY + +++ LQ I +P IF LW+++PESPRWL+ GR E +I+ A
Sbjct: 272 ISYMIISGLAYLTQDYQALQLCIGLPGIFLCFLWFVVPESPRWLLVKGRVDEVRRIIEAA 331
Query: 315 AKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVY 374
AKFN R+LP++ + L + S++Q+ + L+R+ +R I+ IWF++ LVY
Sbjct: 332 AKFNGRQLPVDYQ-LTPPTQESSSQN------ITHLFRSSYLRRITICFLCIWFTMNLVY 384
Query: 375 YGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACL--- 431
YG++LN+S+ GG+VYLN+ ++G+VE PAI ++++I+ K+G++ C T AG+AC
Sbjct: 385 YGIILNMSSFGGNVYLNSALAGLVEIPAIAVAMYIITKVGKKWLFCATLFCAGVACFCAT 444
Query: 432 MTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALIL 491
+T G ++ I+ M+GKF IS+ N I+P+YTAEL+PT +RN+GVGA +V AG+ALIL
Sbjct: 445 ITEGREDILWLKITFLMMGKFTISAGNTIMPVYTAELYPTAIRNVGVGACNVAAGLALIL 504
Query: 492 IPYLWHMQSINIHFPMGLLGVVGVLGGLSVLLLPDT 527
PY+ + I H M LL + GG VL LP T
Sbjct: 505 TPYISLLNKIEGHLLMALLTAWSIFGGFVVLFLPAT 540
|
Source: Drosophila persimilis Species: Drosophila persimilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|390179268|ref|XP_003736850.1| GA26232, isoform B [Drosophila pseudoobscura pseudoobscura] gi|388859779|gb|EIM52923.1| GA26232, isoform B [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 217/517 (41%), Positives = 319/517 (61%), Gaps = 19/517 (3%)
Query: 20 DPYTPDVPEDVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPAS 79
+P + DVI +G +GKWQ +T+ LSL +P T+HI + +Q A++DFWC P
Sbjct: 35 NPAEDEDETDVIGDLMGHYGKWQLLMTVLLSLFQVPNTFHISSSVYQAANKDFWCQRPLE 94
Query: 80 LSTLTLDQWKNLSSISGVPYNPCNILDLDYS-LPYSTLLNIRRDVTA----VRPCLQWTY 134
L + +D+W+NLS G N + +S L T L +V A + C W Y
Sbjct: 95 LQQMPVDEWRNLS---GSNDNCHRWEGIGWSSLANDTTLQEAAEVVASVGNLVACESWEY 151
Query: 135 DS-SSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLV 193
++ + G+T SEWDLVC L+++AEM FLLGVA GG SG +SDKFGRK L S +
Sbjct: 152 ETHDNVGNTWTSEWDLVCDKEHLKNVAEMFFLLGVATGGIISGYLSDKFGRKTMLFISAI 211
Query: 194 FQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPV 253
Q + G+ + FELYL +R LG VS+ +S +L +E V GKW TI G+ LFP+
Sbjct: 212 LQTIFGLCLYFCSSFELYLTLRALLGLVSVSVTYSALILAIEYVDGKWRTIAGMYNLFPL 271
Query: 254 PVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGD 313
P+ Y+ ISG+AY + +++ LQ I +P IF LW+++PESPRWL+ GR E +I+
Sbjct: 272 PISYMIISGLAYLTQDYQALQLCIGLPGIFLCFLWFVVPESPRWLLVKGRVDEVRRIIEA 331
Query: 314 AAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLV 373
AAKFN R+LP++ + L + S++Q+ + L+R+ +R I+ IWF++ LV
Sbjct: 332 AAKFNGRQLPVDYQ-LTPPTQESSSQN------ITHLFRSSYLRRITICFLCIWFTMNLV 384
Query: 374 YYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACL-- 431
YYG++LN+S+ GG+VYLN+ ++G+VE PAI ++++I+ K+G++ C T AG+AC
Sbjct: 385 YYGIILNMSSFGGNVYLNSALAGLVEIPAIAVAMYIITKVGKKWLFCATLFCAGVACFCA 444
Query: 432 -MTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALI 490
+T G ++ I+ M+GKF IS+ N I+P+YTAEL+PT +RN+GVGA +V AG+ALI
Sbjct: 445 TITEGREDILWLKITFLMMGKFTISAGNTIMPVYTAELYPTAIRNVGVGACNVAAGLALI 504
Query: 491 LIPYLWHMQSINIHFPMGLLGVVGVLGGLSVLLLPDT 527
L PY+ + I H M LL + GG VL LP T
Sbjct: 505 LTPYISLLNKIEGHLLMALLTAWSIFGGFVVLFLPAT 541
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194901220|ref|XP_001980150.1| GG16983 [Drosophila erecta] gi|190651853|gb|EDV49108.1| GG16983 [Drosophila erecta] | Back alignment and taxonomy information |
|---|
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 223/521 (42%), Positives = 322/521 (61%), Gaps = 26/521 (4%)
Query: 20 DPYTPDVPEDVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPAS 79
DP + DVI +G +GKWQ +T+ LSL +P T+HI + +Q A++DFWC PA
Sbjct: 35 DPADDEDETDVIGDLMGHYGKWQLLMTVLLSLFQVPNTFHISSSIYQAANKDFWCQRPAQ 94
Query: 80 LSTLTLDQWKNLSSISGVPYNPCNILDLDYS-------LP--YSTLLNIRRDVTAVRPCL 130
+ + W+NLS G N +D+S LP + T + + + A C
Sbjct: 95 FQQMPVATWRNLS---GSVDNCRRWEGIDWSQVSNETTLPSDWKTPAEMDKKLVA---CE 148
Query: 131 QWTY-DSSSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALM 189
+W Y D+ + G+T S+WDLVC L+++AEM FLLGVA GG SG +SDKFGRK L
Sbjct: 149 KWEYEDNDNVGNTWTSQWDLVCEKEHLKNVAEMFFLLGVATGGIISGYLSDKFGRKTMLF 208
Query: 190 GSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMY 249
S V Q + G+ + I FELYL +R LG VS+ +SG +L +E V GKW TI G+
Sbjct: 209 ISAVLQTIFGLWLYICSSFELYLTLRALLGLVSVSVTYSGLILAIEYVDGKWRTIAGMYN 268
Query: 250 LFPVPVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMK 309
LFP+P+ Y+ ISG+AY + +++ LQ I IP IF LW+++PESPRWL+ GR E +
Sbjct: 269 LFPLPISYMIISGLAYLTQDYQRLQLCIGIPGIFLCFLWFVVPESPRWLLVKGRIDEVRR 328
Query: 310 ILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFS 369
I+ AAKFN R+LP++ + L + S+ QDV L+R+ +R IS + IWF+
Sbjct: 329 IIEAAAKFNGRQLPVDYQ-LTPPTQESSTQDVTY------LFRSSYLRRISICFFCIWFT 381
Query: 370 VYLVYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTL---GA 426
+ LVYYG++LN+S+ GG+VYLN+ ++G+VE PAI ++++I+ K+G++ C T + A
Sbjct: 382 MNLVYYGIILNMSSFGGNVYLNSALAGLVEIPAIAVAMYIITKVGKKWLFCATLICAGVA 441
Query: 427 GLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAG 486
+T G A ++ I+ M+GKF IS+ N I+P+YTAEL+PT +RN+GVGA +V AG
Sbjct: 442 CCCAAITEGHADLLWLKITFLMMGKFTISAGNTIMPVYTAELYPTPIRNVGVGACNVAAG 501
Query: 487 VALILIPYLWHMQSINIHFPMGLLGVVGVLGGLSVLLLPDT 527
+ALIL PYL + I H M LL + GG+ VL LP+T
Sbjct: 502 LALILTPYLSLLNKIEGHLLMTLLTAWSIFGGVVVLFLPET 542
|
Source: Drosophila erecta Species: Drosophila erecta Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195452120|ref|XP_002073221.1| GK13265 [Drosophila willistoni] gi|194169306|gb|EDW84207.1| GK13265 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 220/508 (43%), Positives = 319/508 (62%), Gaps = 16/508 (3%)
Query: 29 DVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTLTLDQW 88
DVI IG +GKWQ +T+ LSL IP T+HI + +Q A++DFWC P +L L +D W
Sbjct: 49 DVIGDLIGHYGKWQLVMTVLLSLFQIPNTFHISSSVYQAANKDFWCQRPENLQHLPVDVW 108
Query: 89 KNLSSISGVPYNPCNI----LDLDYSLPY-STLLNIRRDVTAVRPCLQWTYDSS-SFGHT 142
+N+S+ S + +I L + +L L N + + C W Y+++ + G+T
Sbjct: 109 RNISNSSDNCHQRDDINWSQLGNETTLTQLQQLSNGAGNDGELVACQSWEYETNDNVGNT 168
Query: 143 IISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLV 202
SEWDLVC L+++AEM FLLGVA GG SG +SDKFGRK L S V Q + G+ +
Sbjct: 169 WTSEWDLVCDREHLKNVAEMFFLLGVATGGIISGYLSDKFGRKTMLFISAVLQTIFGLWL 228
Query: 203 AISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISG 262
I F LYLV+R LG VS+ +SG +L +E V GKW TI G+ LFP+P+ Y+ ISG
Sbjct: 229 YICSSFNLYLVLRALLGLVSVSVTYSGLILAIEYVDGKWRTIAGMYNLFPLPICYMIISG 288
Query: 263 IAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKL 322
+AY + +++ LQ I +P IF LW+++PESPRWL+ GR E +I+ AAKFN R+L
Sbjct: 289 LAYLTQDYQNLQLCIGLPGIFLCFLWFVVPESPRWLLVKGRIDEVRRIIESAAKFNGRQL 348
Query: 323 PLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLS 382
P + + L + S++QD L+R+ +R IS IWF++ LVYYG++LN+S
Sbjct: 349 PADYQ-LTPPTQESSSQDFTY------LFRSGYLRRISICFLCIWFTMNLVYYGIILNMS 401
Query: 383 NIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACL---MTLGFAPG 439
+ GG+VYLN+ ++G+VE PAI ++++I+ K+G++ C T + +G+AC MT G
Sbjct: 402 SFGGNVYLNSALAGLVEVPAIAVAMYIITKVGKKWLFCATLICSGVACFCAAMTEGREDM 461
Query: 440 SFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWHMQ 499
++ I+ M+GKF IS+ N I+P+YTAEL+PT +RN+GVGA ++ AG+ALIL PYL +
Sbjct: 462 LWLKITFLMMGKFTISAGNTIMPVYTAELYPTPIRNVGVGACNLAAGLALILTPYLSLLN 521
Query: 500 SINIHFPMGLLGVVGVLGGLSVLLLPDT 527
I H M +L GG VL LP+T
Sbjct: 522 KIEGHLLMTILTAWSFFGGFVVLFLPET 549
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 565 | ||||||
| FB|FBgn0063649 | 603 | CG6006 [Drosophila melanogaste | 0.844 | 0.791 | 0.392 | 1.4e-89 | |
| FB|FBgn0038404 | 670 | CG8925 [Drosophila melanogaste | 0.502 | 0.423 | 0.332 | 5.3e-73 | |
| FB|FBgn0019952 | 548 | Orct "Organic cation transport | 0.812 | 0.837 | 0.354 | 1.1e-66 | |
| ZFIN|ZDB-GENE-040724-70 | 542 | si:dkey-119m7.4 "si:dkey-119m7 | 0.895 | 0.933 | 0.303 | 1.5e-60 | |
| FB|FBgn0086365 | 567 | Orct2 "Organic cation transpor | 0.819 | 0.816 | 0.307 | 1.4e-57 | |
| ZFIN|ZDB-GENE-040426-2167 | 562 | slc22a2 "solute carrier family | 0.782 | 0.786 | 0.298 | 1.6e-57 | |
| ZFIN|ZDB-GENE-120215-78 | 537 | si:dkey-166k12.1 "si:dkey-166k | 0.877 | 0.923 | 0.297 | 7.5e-57 | |
| ZFIN|ZDB-GENE-091012-1 | 549 | slc22a5 "solute carrier family | 0.881 | 0.907 | 0.301 | 5.3e-56 | |
| UNIPROTKB|O15244 | 555 | SLC22A2 "Solute carrier family | 0.892 | 0.908 | 0.282 | 1.8e-55 | |
| UNIPROTKB|F1NXX1 | 557 | F1NXX1 "Uncharacterized protei | 0.884 | 0.897 | 0.285 | 6.1e-55 |
| FB|FBgn0063649 CG6006 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
Identities = 196/499 (39%), Positives = 286/499 (57%)
Query: 20 DPYTPDVPEDVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPAS 79
DP + DVI +G +GKWQ +T+ LSL +P T+HI + +Q A++DFWC PA
Sbjct: 74 DPADDEDETDVIGDLMGHYGKWQLLMTVLLSLFQVPNTFHISSSIYQAANKDFWCQRPAQ 133
Query: 80 LSTLTLDQWKNLS-SIS------GVPYNPCNILDLDYSLPYSTLLNIRRDVTAVRPCLQW 132
L + + W+NLS S+ G+ ++ + + +LP D V C +W
Sbjct: 134 LQHMPVATWRNLSGSVDNCRRWEGIDWSQ---VSNETTLPSDWKTPAEMDKKLVA-CEKW 189
Query: 133 TYDSS-SFGHTIISEWDLVCSNSSLESLAEMXXXXXXXXXXXXXXXXXDKFGRKKALMGS 191
Y+++ + G+T S+WDLVC L+++AEM DKFGRK L S
Sbjct: 190 EYETNDNVGNTWTSQWDLVCEKEHLKNVAEMFFLLGVATGGIISGYLSDKFGRKTMLFIS 249
Query: 192 LVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLF 251
V Q + G+ + I FELYL +R LG VS+ +SG +L +E V GKW TI G+ LF
Sbjct: 250 AVLQTIFGLWLYICSSFELYLTLRALLGLVSVSVTYSGLILAIEYVDGKWRTIAGMYNLF 309
Query: 252 PVPVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKIL 311
P+P+ Y+ ISG+AY + +++ LQ I IP IF LW+++PESPRWL+ GR E +I+
Sbjct: 310 PLPISYMIISGLAYLTQDYQRLQLCIGIPGIFLCFLWFVVPESPRWLLVKGRIDEVRRII 369
Query: 312 GDAAKFNSRXXXXXXXXXXXXSVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSXX 371
AAKFN R ST QDV L+R+ +R IS + IWF+
Sbjct: 370 EAAAKFNGRQLPADYQLTPPTQESST-QDVTY------LFRSSYLRRISICFFCIWFTMN 422
Query: 372 XXXXXXXXNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACL 431
N+S+ GG+VYLN+ ++G+VE PAI ++++I+ K+G++ C T + AG+AC
Sbjct: 423 LVYYGIILNMSSFGGNVYLNSALAGLVEIPAIAVAMYIITKVGKKWLFCATLICAGVACC 482
Query: 432 ---MTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVA 488
+T G A ++ I+ M+GKF IS+ N I+P+YTAEL+PT +RN+GVGA +V AG+A
Sbjct: 483 CAAITEGHADLLWLKITFLMMGKFTISAGNTIMPVYTAELYPTPIRNVGVGACNVAAGLA 542
Query: 489 LILIPYLWHMQSINIHFPM 507
LIL PYL + I H M
Sbjct: 543 LILTPYLSLLNKIEGHLLM 561
|
|
| FB|FBgn0038404 CG8925 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 98/295 (33%), Positives = 158/295 (53%)
Query: 30 VINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTLTLDQWK 89
++ +G WQ LS+ CT+HIF FQ A +DFWC P +L +++ +W+
Sbjct: 149 LLERLLGCLTPWQSMWCALLSIFQAICTFHIFVYVFQIAPKDFWCARPENLMQMSVSEWR 208
Query: 90 NLSSISGVPYNPCNILDLDYS-LPYST--LLNIRRDVTAV--RPCLQWTY-DSSSFGHTI 143
N+S S N C +LD+DY+ + Y L+N + T + R C + + D T+
Sbjct: 209 NISQSS----NGCLLLDVDYTQVTYENNQLINWPENATDLGYRQCWHFEFSDVDGSAKTL 264
Query: 144 ISEWDLVCSNSSLESLAEMXXXXXXXXXXXXXXXXXDKFGRKKALMGSLVFQLVLGVLVA 203
+ E+DLVC L SL E D+FGR+ LM + Q V G ++A
Sbjct: 265 VQEFDLVCGRDIL-SLVETCFLVGAAAGAVLSGWISDRFGRRHTLMAFVTIQSVFGGILA 323
Query: 204 ISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGI 263
S +++ +R +GF +++ FVL +ELV GKW T++G++ + PV + Y+ +G+
Sbjct: 324 FSTSVAMFMSLRVIIGFASMTVTVVSFVLVVELVSGKWRTVIGILNILPVAISYVLSAGL 383
Query: 264 AYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFN 318
AY +WR LQ I+ P + L++W+ +PESPRWL++ GR E ++ AA+ N
Sbjct: 384 AYLIRDWRHLQLAISWPWLIMLSIWFWLPESPRWLLAQGRLDELCGLIERAARMN 438
|
|
| FB|FBgn0019952 Orct "Organic cation transporter" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 170/480 (35%), Positives = 248/480 (51%)
Query: 28 EDVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIP---ASLSTLT 84
+DVI +G+FG +Q ++ L L I C +H A F A DF C +P S+ L+
Sbjct: 4 DDVITH-LGEFGPYQKRIYYLLCLPAIVCAFHKLAGVFLLAKPDFRCALPYENGSIYELS 62
Query: 85 LDQWKNLSSISGVPYNP-CNILDLDYSLPYSTLLNIRRDVTAVRPCLQWTYDSSSFGHTI 143
W NLS P N C+ D+DY+ Y +I R + C + YD S + ++
Sbjct: 63 PHLW-NLS----YPENERCSYYDVDYTEEYLNG-SIPRSSNETKTCSSYVYDRSKYLNSA 116
Query: 144 ISEWDLVCSNSSLESLAEMXXXXXXXXXXXXXXXXXDKFGRKKALMGSLVFQLVLGVLVA 203
++EW+LVCS S L + ++ DK GRK SLV QL+ GVL A
Sbjct: 117 VTEWNLVCSRSLLSATSDSLFMLGVLLGSLIFGQMSDKLGRKPTFFASLVLQLIFGVLAA 176
Query: 204 ISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGV-MYLFPVPVGYIAISG 262
++P + Y + R +G + +V+ +E+VG + GV M +F VG++ +G
Sbjct: 177 VAPEYFSYTISRMIVGATTSGVFLVAYVIALEMVGSSYRLFAGVAMQMF-FSVGFMLTAG 235
Query: 263 IAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRXX 322
AY+ H+WR LQ IT+P + FL +WI+PES RWL+ GR EA I+ AAK N
Sbjct: 236 FAYFIHDWRWLQIAITLPGLLFLCYYWIIPESARWLLMKGRKDEAFVIIEKAAKENKVEV 295
Query: 323 XXXXXXXXXXSVLSTN-QDVGKKVQ----VMDLWRTPLIRLISFVQYIIWFSXXXXXXXX 377
V QD Q V DL R P +R + + + WF
Sbjct: 296 PNEIYEQLVDEVAEKKKQDEMAASQPAATVFDLLRYPNLRRKTLLIFFDWFVNSGVYYGL 355
Query: 378 XXNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFA 437
N +N+GG+ +N +ISG VE P + +F L + GRR LC T + AG++ L T+ F
Sbjct: 356 SWNTNNLGGNQLVNFMISGAVEIPGYTLLLFTLNRWGRRSILCGTMMVAGISLLATI-FV 414
Query: 438 PG--SFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495
P +++ ++ AM+GK AI+SS I I++AE FPT +RN+G+GASS+ A V IL PYL
Sbjct: 415 PSDMNWLIVACAMIGKLAITSSYGTIYIFSAEQFPTVVRNVGLGASSMVARVGGILAPYL 474
|
|
| ZFIN|ZDB-GENE-040724-70 si:dkey-119m7.4 "si:dkey-119m7.4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 157/517 (30%), Positives = 248/517 (47%)
Query: 29 DVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTLTLDQW 88
D + IG FG++Q L +++ L I +H+ F GA C + +
Sbjct: 4 DKVLDRIGGFGRFQKTLYVWICLPQIFLAFHMLVSVFTGAVPPHLCRSSWPVGD-SAGPR 62
Query: 89 KNLSSISGVPYNPCNILDLDYSLPYST-LLNIRRDVTAVRPCLQ-WTYDSSSFGHTIISE 146
NLS S P C D SLP L I + + C W + F TI +E
Sbjct: 63 LNLS-FSSAPGESCTPSQ-DGSLPQRNHSLPITEHSSTAKGCTGGWEFSKEVFLSTIATE 120
Query: 147 WDLVCSNSSLESLAEMXXXXXXXXXXXXXXXXXDKFGRKKALMGSLVFQLVLGVLVAISP 206
WDLVC N+++ ++ DK+GR+ ++ L Q + GV A +P
Sbjct: 121 WDLVCENATMNNIGSSIYMFGLLVGAVLFGALADKYGRRIIILIGLAIQAIFGVGAAFAP 180
Query: 207 WFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYY 266
F +Y+++RF +G +++ + FVL E G K + GV+ + GYI ++G+AY
Sbjct: 181 NFYIYVLLRFVVGTTVSAVIMNAFVLGTEWTGPKKRMLAGVITDYFFGFGYILLAGVAYL 240
Query: 267 SHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRXXXXXX 326
+WR LQ I+ P+ FL W++P+S RWL++ +++EA+ ++ AA N +
Sbjct: 241 IRDWRKLQLAISAPSFLFLFYVWVLPKSARWLMANNKHEEALDLIRKAALINGKPLEDDD 300
Query: 327 XXXXXXSVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSXXXXXXXXXXNLSNIGG 386
S +K V+DL RTP +R S + + +WF N+S+ G
Sbjct: 301 MELYQSPKSSEKLQEQRKYTVLDLVRTPRMRKQSLILFYLWFVNVLVYYGLSLNISDFGM 360
Query: 387 DVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPG--SFITI 444
++YL +I G+VE PA I++F L + R L +G GLACL+T+ F P S +
Sbjct: 361 NIYLTQMIFGLVEMPARTITLFTLNRSRRISQLAFLAVG-GLACLLTI-FIPDDLSVVRT 418
Query: 445 SLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWHMQSINIH 504
LAMVGKF I++S I+ IY+AE+FPT +R G+G S+ A ++ P ++ ++ I H
Sbjct: 419 VLAMVGKFGITASLSIVYIYSAEVFPTVIRQNGIGMGSMCARAGGVIAPVIYLLRGIGRH 478
Query: 505 FPMXXXXXXXXXXXXXXXXXPDTTG--LADNLHQLEN 539
PM P+T L D + +EN
Sbjct: 479 TPMVVFGLCPLIGAVLTMFLPETAHKHLPDTIEDVEN 515
|
|
| FB|FBgn0086365 Orct2 "Organic cation transporter 2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 148/481 (30%), Positives = 240/481 (49%)
Query: 35 IGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTLTLDQWKNLSSI 94
+GDFG++Q + + L +IP +H A F A DF C +P + + D +L ++
Sbjct: 10 LGDFGRYQKIIYFLICLTSIPVAFHKLAGVFLLAKPDFRCALPFENGS-SYDLPTHLWNL 68
Query: 95 SGVPYNP-CNILDLDYSLPYSTLLNIRRDVTAVRPCLQWTYDSSSFGHTIISEWDLVCSN 153
S P N C+ D+DY+ Y +I R + C + YD S + ++ ++EW+LVC
Sbjct: 69 S-YPENERCSYYDVDYTEEYLNG-SIPRSSNETKTCSSYVYDRSKYLNSAVTEWNLVCGR 126
Query: 154 SSLESLAEMXXXXXXXXXXXXXXXXXDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLV 213
+ + ++ DK+GRK L SLV Q++ GVL ++P + Y
Sbjct: 127 DFMAATSDSLFMLGVLLGSIVFGQLSDKYGRKPILFASLVIQVLFGVLAGVAPEYFTYTF 186
Query: 214 VRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSHNWRLL 273
R +G + +V+ ME+VG G+ + VG++ + AY+ H+WR L
Sbjct: 187 ARLMVGATTSGVFLVAYVVAMEMVGPDKRLYAGIFVMMFFSVGFMLTAVFAYFVHDWRWL 246
Query: 274 QWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFN----SRXXXXXXXXX 329
Q +T+P + F+ +WI+PES RWL+ GR A+ + AA+FN S
Sbjct: 247 QIALTLPGLIFMFYYWIIPESARWLLLKGRKDCAIANMQKAARFNKVEISDEALSELLDE 306
Query: 330 XXXSVLSTNQ-------DVGKKVQVMDLWRTPLIRLISFVQYIIWFSXXXXXXXXXXNLS 382
S Q D G V DL+ P +R + + ++ W N S
Sbjct: 307 GENSEEKAKQKLEDQELDEGPPPSVWDLFCYPNLRRKTLLIFLDWLVTSGVYYGLSWNTS 366
Query: 383 NIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFI 442
N+GG+V LN +ISG VE PA + + L + GRR LC + AGL+ L T+ P
Sbjct: 367 NLGGNVLLNFVISGAVEIPAYIFLLLTLNRWGRRSILCGCLVMAGLSLLATV-IIPQRMH 425
Query: 443 T--ISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWHMQS 500
T ++ AM+GK AI++S + I++AE FPT +RN+ +GA+S+ A ++ ++ P+L + +
Sbjct: 426 TLIVACAMLGKLAITASYGTVYIFSAEQFPTVVRNVALGAASMVARISGMMAPFLNFLAT 485
Query: 501 I 501
I
Sbjct: 486 I 486
|
|
| ZFIN|ZDB-GENE-040426-2167 slc22a2 "solute carrier family 22 (organic cation transporter), member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 526 (190.2 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 138/462 (29%), Positives = 218/462 (47%)
Query: 91 LSSISGVPYNPCNILDLDYSLPYSTLLNIRRDVT----AVRP---CLQ-WTYDSSSFGHT 142
++ SG Y+ C D+D++ + N D +V P C+ W YD +
Sbjct: 77 INGSSGASYSQCGRFDVDWNATGLSCENPDGDFNQSQLSVMPMMSCVDGWEYDYVG-RQS 135
Query: 143 IISEWDLVCSNSSLESLAEMXXXXXXXXXXXXXXXXXDKFGRKKALMGSLVFQLVLGVLV 202
++E+DLVC ++ + + DK+GR K+ + + F V G+LV
Sbjct: 136 FVTEFDLVCGDAWYVDMFQATLSIGFLVGSIAIGYLADKYGRMKSFLMTNFFIGVTGILV 195
Query: 203 AISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISG 262
A SP + LV R GF G+VL ELVG +GV Y +G + +
Sbjct: 196 ATSPNYISLLVFRALFGFGVKGGWMVGYVLITELVGVDHRRTVGVTYQLFFSMGILLLPL 255
Query: 263 IAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRXX 322
+AY+ NWR LQ V T+P I FLT +W +PESPRWL++ + EA++I AK N +
Sbjct: 256 LAYFITNWRWLQVVFTVPYICFLTYYWFIPESPRWLLTQNKIAEAVEITKSIAKENRKTL 315
Query: 323 XXXXXXXXXXSVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSXXXXXXXXXXNLS 382
++ N D G MDL++T +R +F+ WF+ L
Sbjct: 316 SKKIE-----TLKDDNIDSGSTASFMDLFKTAKLRTYTFILSFNWFTSAVVYQGLIMRLG 370
Query: 383 NIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFI 442
+GG+VY++ +ISGIVE PA + + + ++GRR P + AG ACL+T F P S
Sbjct: 371 ILGGNVYVDFLISGIVELPAAFLILLTIERIGRRLPFATANIVAGAACLIT-AFIPDSMF 429
Query: 443 TI--SLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL-WHMQ 499
+ ++A VG+ I+ + ++ EL+PT +RNLGV S V I+ P+L + +
Sbjct: 430 WLKSAVACVGRLGITMAFEMVVFVNTELYPTVIRNLGVSVCSTLCDVGGIVAPFLLYRLA 489
Query: 500 SINIHFPMXXXXXXXXXXXXXXXXXPDTTG--LADNLHQLEN 539
I + P+ P+T G L + + +E+
Sbjct: 490 VIWLELPLIIFGALAFVAGGLVLLLPETKGVPLPETIDDIEH 531
|
|
| ZFIN|ZDB-GENE-120215-78 si:dkey-166k12.1 "si:dkey-166k12.1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 153/514 (29%), Positives = 242/514 (47%)
Query: 29 DVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTLTLDQW 88
D + + IG FGK+Q L +++ L I +H+ A F GA+ C ST ++ W
Sbjct: 4 DQLLATIGGFGKYQKLLYVWICLPQIFLGFHMMASVFTGATPPHRCRG----STSGMEDW 59
Query: 89 KNLSSISGVPYNPCNILDLDYSLPYSTLLNIRRDVTAVRPC-LQWTYDSSSFGHTIISEW 147
S++S V + + ++ + + R +A C W Y F T ++EW
Sbjct: 60 TFTSNLSHVNLSISRLAG--FADACTAASGVNR--SARTNCETGWVYSHEVFQSTTVTEW 115
Query: 148 DLVCSNSSLESLAEMXXXXXXXXXXXXXXXXXDKFGRKKALMGSLVFQLVLGVLVAISPW 207
DLVC L SL D++GR+ A++ SL Q V GV A +P
Sbjct: 116 DLVCDKRGLSSLGSSIYMLGLLVGAVVFGAMADRYGRRFAMLVSLALQTVFGVAAAFAPN 175
Query: 208 FELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS 267
F +Y+ +RF +G ++ + FVL E + + G+ + GY+ ++G+A+
Sbjct: 176 FPVYVGLRFIIGMTVSGVIINAFVLGTEWTCTQRRMLAGIFTDYFFGFGYMLLAGVAFLI 235
Query: 268 HNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRXXXXXXX 327
+WR LQ I+ P F+ W++P S RWL+ R +EA+ +L AA N R
Sbjct: 236 RDWRKLQLAISAPGFLFIFYIWVLPHSARWLLVNNRKEEAIDLLRKAASVNGRTLPPTVQ 295
Query: 328 XXXXXSVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSXXXXXXXXXXNLSNIGGD 387
S + K V+DL RTP +R + + + IWF +S++G D
Sbjct: 296 VERYESPQGRS-----KYTVVDLLRTPQMRKRALILFYIWFVNVLVYYGLSLGVSDLGAD 350
Query: 388 VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF-APGSFITISL 446
+YL + G+VE PA + + +LL R+ PL + + G ACL+TL A + + +L
Sbjct: 351 LYLTQFMFGLVEIPARTL-VLVLLPCSRKIPLSVFLVVGGGACLLTLTLPADSAHVRTAL 409
Query: 447 AMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWHMQSINIHFP 506
AMVGKF I++S II +Y+AELFPT +R G+G SS+ A + +L P + + P
Sbjct: 410 AMVGKFGITASFAIIYVYSAELFPTVLRQTGIGVSSMFARMGGVLAPLINLLGRHTPVVP 469
Query: 507 MXXXXXXXXXXXXXXXXXPDTTG--LADNLHQLE 538
M P+T L D++H E
Sbjct: 470 MLIFGSTPLLAAALALALPETARQPLPDSIHDTE 503
|
|
| ZFIN|ZDB-GENE-091012-1 slc22a5 "solute carrier family 22 (organic cation/carnitine transporter), member 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 156/518 (30%), Positives = 244/518 (47%)
Query: 35 IGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTLTLDQWKNLSSI 94
+G G + +L L+L+ I H + F AS C + +L+ L+ ++
Sbjct: 11 LGQTGPFFIRLFCLLNLIYISTGLHGLYIVFVAASPAHRCRVDVNLTEDWLEASAPTETL 70
Query: 95 SG--VPYNPCNILDLDY--SLP---YST-LLNIRRDVTAVRPCLQ-WTYDSSSFGHTIIS 145
S + + C L +L YS +NI D+ R C W Y + + TI+S
Sbjct: 71 SNGDLQVSQCWRYSLQTLTNLSGQGYSPGQINIT-DIPRER-CEDGWVYSADVYHSTIVS 128
Query: 146 EWDLVCSNSSLESLAEMXXXXXXXXXXXXXXXXXDKFGRKKALMGSLVFQLVLGVLVAIS 205
EWDLVC + LA D+FGRKK L GSL + +L + S
Sbjct: 129 EWDLVCDSEWRVPLASSTLYMGYLLGSIVSGQLSDRFGRKKVLFGSLAAEALLMFAQSFS 188
Query: 206 PWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLF-PVPVGYIAISGIA 264
P + ++ V+ FF+G F +S+ + FVL E++ G + + F VGY+ + +A
Sbjct: 189 PSWLIFCVLYFFIGAFQISLYITAFVLGNEVLSGSLRVLFTTLGAFLHYCVGYMLLPWVA 248
Query: 265 YYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRXXXX 324
+ +WR L V++ T+ ++ LWW++PESPRWL+S G +E+ IL DAA+ N
Sbjct: 249 FAIRHWRTLLRVLSGLTVVYIPLWWLIPESPRWLLSQGHVQESEAILRDAARKNRVPAPE 308
Query: 325 XXXXXXXXSVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSXXXXXXXXXXNLSNI 384
+ + K +D+ RT IR +F+ ++W + N +N+
Sbjct: 309 VIFKQSQIKEAAFQKS---KYSALDVLRTSNIRRTTFMCLLLWMAINIGYFGLSLNTTNL 365
Query: 385 GGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITI 444
GD +LN +S + E PA ++S F LLK RRP+ L G L+ + P T+
Sbjct: 366 SGDPFLNCFLSAVTEVPAYIVSTF-LLKSCPRRPVLSAFLVIGGGFLLLVQLIPDRLQTL 424
Query: 445 SLA--MVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWHMQSIN 502
+LA M GKF + S ++ IYTAEL+PT +RNLG+G S A + I PY+ + + N
Sbjct: 425 ALALEMAGKFGFTMSFTVVYIYTAELYPTVLRNLGMGMCSSAARIGSITAPYIIFLGTFN 484
Query: 503 IHFPMXXXXXXXXXXXXXXXXXPDTTG--LADNLHQLE 538
H P P+T G L +NL Q++
Sbjct: 485 RHLPYVLMGSLTITASLANLFLPETFGKVLPENLEQMQ 522
|
|
| UNIPROTKB|O15244 SLC22A2 "Solute carrier family 22 member 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 153/542 (28%), Positives = 262/542 (48%)
Query: 24 PDVPEDVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTL 83
P +DV+ G+F +Q Q+ L+LL+ + F G + D C P ++ L
Sbjct: 2 PTTVDDVLEHG-GEFHFFQKQMFFLLALLSATFAPIYVGIVFLGFTPDHRCRSPG-VAEL 59
Query: 84 TLD-QWKNLSSIS-GVP-------YNP--CNILDLDYSL-------PYSTLLNIRRDVTA 125
+L W ++ VP +P C ++D++ P ++L + R
Sbjct: 60 SLRCGWSPAEELNYTVPGPGPAGEASPRQCRRYEVDWNQSTFDCVDPLASL-DTNRSRLP 118
Query: 126 VRPCLQ-WTYDSSSFGHTIISEWDLVCSNSSLESLAEMXXXXXXXXXXXXXXXXXDKFGR 184
+ PC W Y++ G +I++E++LVC+NS + L + D+FGR
Sbjct: 119 LGPCRDGWVYETP--GSSIVTEFNLVCANSWMLDLFQSSVNVGFFIGSMSIGYIADRFGR 176
Query: 185 KKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTI 244
K L+ +++ GVL+AISP + L+ R G + G++L E VG ++
Sbjct: 177 KLCLLTTVLINAAAGVLMAISPTYTWMLIFRLIQGLVSKAGWLIGYILITEFVGRRYRRT 236
Query: 245 MGVMYLFPVPVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRN 304
+G+ Y VG + ++G+AY +WR LQ+ +++P FFL +W +PESPRWL+S +N
Sbjct: 237 VGIFYQVAYTVGLLVLAGVAYALPHWRWLQFTVSLPNFFFLLYYWCIPESPRWLISQNKN 296
Query: 305 KEAMKILGDAAKFNSRXXXXXXXXXXXXSVLSTNQDVGKKVQ--VMDLWRTPLIRLISFV 362
EAM+I+ AK N + L ++ GKK+ +DL RTP IR + +
Sbjct: 297 AEAMRIIKHIAKKNGKSLPASLQR------LRLEEETGKKLNPSFLDLVRTPQIRKHTMI 350
Query: 363 QYIIWFSXXXXXXXXXXNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLT 422
WF+ ++ G ++YL+ S +VEFPA + I + ++GRR P +
Sbjct: 351 LMYNWFTSSVLYQGLIMHMGLAGDNIYLDFFYSALVEFPAAFMIILTIDRIGRRYPWAAS 410
Query: 423 TLGAGLACLMTLGFAPGS--FITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGA 480
+ AG ACL ++ F PG ++ I ++ +G+ I+ + I+ + AEL+PT +RNLGV
Sbjct: 411 NMVAGAACLASV-FIPGDLQWLKIIISCLGRMGITMAYEIVCLVNAELYPTFIRNLGVHI 469
Query: 481 SSVPAGVALILIPYL-WHMQSINIHFPMXXXXXXXXXXXXXXXXXPDTTG--LADNLHQL 537
S + I+ P+L + + +I + P+ P+T G L + + +
Sbjct: 470 CSSMCDIGGIITPFLVYRLTNIWLELPLMVFGVLGLVAGGLVLLLPETKGKALPETIEEA 529
Query: 538 EN 539
EN
Sbjct: 530 EN 531
|
|
| UNIPROTKB|F1NXX1 F1NXX1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 150/525 (28%), Positives = 245/525 (46%)
Query: 31 INSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTLTLDQWKN 90
+ + +G++G++Q + LS IP ++ ++ F + + C +P + L+ ++W+N
Sbjct: 7 VTAFLGEWGRFQRLVFFLLSASIIPNGFNGLSIVFLAGTPEHRCAVPPG-ANLS-EEWRN 64
Query: 91 LS---SISGVPYNP--CNILDLDYSLPYSTL-LNIRRDVTAVR----PCLQ-WTYDSSSF 139
S + G P C L S L L DV PCL W Y +
Sbjct: 65 ASIPLELRGGVTEPSRCRRYRLAVLANLSALGLRPGSDVQLAELEQEPCLDGWEYSRDVY 124
Query: 140 GHTIISEWDLVCSNSSLESLAEMXXXXXXXXXXXXXXXXXDKFGRKKALMGSLVFQLVLG 199
TI++EW+LVC N ++ DKFGRK L +L Q +
Sbjct: 125 RSTIVTEWNLVCDNDWKGPMSTSLFFVGVLLGSFISGQLSDKFGRKNVLFSTLAMQTIFS 184
Query: 200 VLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTI---MGVMYLFPVPVG 256
+ S +E++ V +G +S + FVL E++G + +GV + G
Sbjct: 185 FIQIFSTSWEMFSVFFLLVGMGQISNYVAAFVLGTEILGKSIRLLFCTLGVCIFYAF--G 242
Query: 257 YIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAK 316
Y+ + AY+ +WR+L +T+P + + LWWI+PESPRWL+S GR +EA I+ AAK
Sbjct: 243 YMLLPLFAYFIRDWRMLLLALTLPGLLCIPLWWIIPESPRWLISQGRFQEAEDIIRKAAK 302
Query: 317 FNSRXXXXXXXXXXXXSVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSXXXXXXX 376
N LS+ + + ++DL RT I I+ + I+W
Sbjct: 303 INKVTAPDVIFDPSELQDLSSQRQ--QTYTILDLMRTRNILTITIMSVILWMIISVGYFG 360
Query: 377 XXXNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF 436
+ N+ GDVYLN +S ++E PA +IS +L + RR + L G L+ +
Sbjct: 361 LSLDTPNLHGDVYLNCFLSAVIEVPAYIISWLLLRNLPRRYSMA-AALFLGGCVLLFIQL 419
Query: 437 APGSF--ITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPY 494
P ++I L M+GKF I+S+ ++ +YTAEL+PT +RN+GVGASS+ + + IL PY
Sbjct: 420 VPSHLRALSILLVMLGKFGITSAFSMVYVYTAELYPTVVRNMGVGASSMASRLGSILSPY 479
Query: 495 LWHMQSINIHFPMXXXXXXXXXXXXXXXXXPDTTG--LADNLHQL 537
++ + + P P++ G L D + Q+
Sbjct: 480 FAYLGAYDRFLPYILMGSLTVLSGILTLFLPESYGMPLPDTIEQM 524
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8MJI6 | S22A2_RABIT | No assigned EC number | 0.3115 | 0.8867 | 0.9043 | yes | N/A |
| Q5R5H7 | S22A2_PONAB | No assigned EC number | 0.3123 | 0.8938 | 0.9099 | yes | N/A |
| Q9WTN6 | S22AL_MOUSE | No assigned EC number | 0.3093 | 0.9327 | 0.9343 | yes | N/A |
| Q9Y226 | S22AD_HUMAN | No assigned EC number | 0.3205 | 0.8707 | 0.8929 | yes | N/A |
| Q9R0W2 | S22A2_RAT | No assigned EC number | 0.3100 | 0.9097 | 0.9261 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 565 | |||
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 1e-109 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 2e-28 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-25 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-15 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 6e-15 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-12 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 7e-12 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 4e-11 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 7e-11 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-09 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 6e-08 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 9e-07 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 1e-06 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 2e-06 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 8e-06 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 2e-05 | |
| TIGR00710 | 385 | TIGR00710, efflux_Bcr_CflA, drug resistance transp | 5e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.002 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.002 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 0.003 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 336 bits (864), Expect = e-109
Identities = 182/508 (35%), Positives = 281/508 (55%), Gaps = 23/508 (4%)
Query: 36 GDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIP--ASLSTLTLDQWKNLSS 93
G+FG +Q + L L+L +H + F GA+ + C +P A+LS+
Sbjct: 1 GEFGPFQRRTFLLLALPIALLAFHFVLIVFLGATPEHHCRLPDAANLSSRCELNLTLPRL 60
Query: 94 ISGVPYNPCNILDLDYSLP-YSTLLNIRRDVT--------AVRPCLQ-WTYDSSSFGHTI 143
G P + L + + ++ + + A PCL W Y +F TI
Sbjct: 61 PDGRPES-----CLRFMVDQWANPSLLGCEPLKLSDLGLAATEPCLDGWEYSYDTFSSTI 115
Query: 144 ISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVA 203
++EWDLVC ++ L + F +GV G F G +SD+FGRKK L+ S + V GVL A
Sbjct: 116 VTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTA 175
Query: 204 ISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGI 263
SP + ++LV R +G I VL E + K I+G + +G + + +
Sbjct: 176 FSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLV 235
Query: 264 AYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLP 323
AY+ +WR LQ +++PT F L W +PESPRWL+S GR +EA+KIL AK N +KLP
Sbjct: 236 AYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLP 295
Query: 324 LNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSN 383
+ L E LS+++ K+ +DL+RTP +R + ++WF+ YYGLVL+L N
Sbjct: 296 AEVLSLSLEKDLSSSK---KQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGN 352
Query: 384 IGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPG--SF 441
+GG++YL+ ISG+VE PA +I++ ++ ++GRR + + L AG+A L L F P F
Sbjct: 353 LGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALL-LLLFVPVDLYF 411
Query: 442 ITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWHMQSI 501
+ +LA++GKF I+S+ ++ +YTAEL+PT +RNLGVG S A V I+ P+L ++
Sbjct: 412 LRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEK 471
Query: 502 NIHFPMGLLGVVGVLGGLSVLLLPDTTG 529
+ P+ L G + +L G+ L LP+T G
Sbjct: 472 WLFLPLVLFGGLALLAGILTLFLPETKG 499
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 2e-28
Identities = 95/394 (24%), Positives = 165/394 (41%), Gaps = 33/394 (8%)
Query: 163 VFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPW--FELYLVVRFFLGF 220
+F +G G F+G + D+FGRKK+L+ V ++ +L + F + +V R +G
Sbjct: 54 IFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGL 113
Query: 221 FC-VSIVFSGFVLCMELVGGKWLTIMGVMYLFPV----PVGYIAISGIAYYSHN--WRLL 273
V + E+ K +G +Y + V I G+ YS++ WR+
Sbjct: 114 GVGGISVLVP-MYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIP 172
Query: 274 QWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKES 333
+ +P I L +PESPRWLV G+ +EA +L R + +++ +E
Sbjct: 173 LGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVL-----AKLRGVSDVDQEIQEEK 227
Query: 334 VLSTNQDVGKKVQVMDLWRTP----LIRLISFVQYIIWFS--VYLVYYGLVLNLSNIGGD 387
+K ++L+R + + +Q + + YY + + D
Sbjct: 228 DSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSD 287
Query: 388 VYLNTIISGIVEFPAIVISIFILLKMGRRRPL---------CLTTLGAGLACLMTLGFAP 438
L TII G+V F I+IF++ + GRR L C LG L + A
Sbjct: 288 SLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAG 347
Query: 439 GSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWHM 498
I L + FA+ + + +ELFP +R + ++ +A LI +L+ +
Sbjct: 348 IVAIVFILLFIAFFAL-GWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPI 406
Query: 499 QSINIHFPMGLL-GVVGVLGGLSV-LLLPDTTGL 530
+ I + L+ + VL L V +P+T G
Sbjct: 407 ITGAIGGYVFLVFAGLLVLFILFVFFFVPETKGR 440
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 1e-25
Identities = 104/412 (25%), Positives = 168/412 (40%), Gaps = 40/412 (9%)
Query: 154 SSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVL---VAISPWFEL 210
SSL L +FL+G G F+G +SD+FGRKK+L+ + ++ +L A + E+
Sbjct: 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEM 129
Query: 211 YLVVRFFLGFF--CVSIVFSGFV--LCMELVGGKWLTIMGVMYLFPVPVGYIAISG--IA 264
+V R LG S + ++ + + + G ++ + F + V Y SG
Sbjct: 130 LIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSL 189
Query: 265 YYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPL 324
+ WR+ + IP + +PESPRWLV GR +EA K L + L
Sbjct: 190 NNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKEL 249
Query: 325 NLEKLLKE-----SVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFS--VYLVYYGL 377
E L + S G R L + +Q+ F+ ++YY
Sbjct: 250 LDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGV-VLQWFQQFTGINAIMYYSP 308
Query: 378 VLNLSNIG---GDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTL 434
+ N G +L +II G V F ++IF++ + GRR L L CL L
Sbjct: 309 TI-FENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLL-LIGAAGMAICLFVL 366
Query: 435 GFAPGSFITISLAMVGKFAISSSNVIIPIYT-----------AELFPTKMRNLGVGASSV 483
G SF+T S G AI + I + +E+FP +R G+ +
Sbjct: 367 GILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVA 426
Query: 484 PAGVALILIPYLWHMQSINIHFP-----MGLLGVVGVLGGLSVLLLPDTTGL 530
+A ++ +L+ +I G L V+G++ LP+T G
Sbjct: 427 ANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLI--FVYFFLPETKGR 476
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-15
Identities = 71/327 (21%), Positives = 133/327 (40%), Gaps = 23/327 (7%)
Query: 165 LLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVS 224
L+G+AFG F G ++D+ GR++ L+ S++ V +L A++ L++RF G
Sbjct: 62 LIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGG 121
Query: 225 IVFSGFVLCMELVGGKW-LTIMGVMYLFPVPVGYI---AISGIAYYSHNWRLLQWVITI- 279
++ + L E ++ T +G+M+ P+G ++G WR L +V I
Sbjct: 122 LMPNLNALVSEYAPKRFRGTAVGLMFC-GYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIA 180
Query: 280 PTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQ 339
P + L L +PES +LVS + + + ++ + ++
Sbjct: 181 PLLLLLLLMRFLPESIDFLVSKR---------PETVRRIVNAIAPQMQAEAQSALPEQKA 231
Query: 340 DVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLV----LNLSNIGGDVYLNTIIS 395
G K V I+ + ++++F + + Y L + +G + L
Sbjct: 232 TQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGG 291
Query: 396 GIVEFPAIVISIFI---LLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKF 452
+ F ++ SI ++G R L LGA A L+ + + + A+ G F
Sbjct: 292 ALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFF 351
Query: 453 AISSSNVIIPIYTAELFPTKMRNLGVG 479
+ A +PT +R GVG
Sbjct: 352 VN-GGQSGLYALMALFYPTAIRATGVG 377
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 6e-15
Identities = 74/275 (26%), Positives = 111/275 (40%), Gaps = 45/275 (16%)
Query: 145 SEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAI 204
+E DL +S L +V+L G+ G FF G ++DK GRK+ L+ L +
Sbjct: 193 AEKDLCIPDSGKGMLGLIVYL-GMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSF 251
Query: 205 SPWFELYLVVRFFLGFF---CVSIVFSGFV--------------LCM-ELVGGKWLTIMG 246
+ +L R GF + IVFS F LCM ++GG + M
Sbjct: 252 VQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA 311
Query: 247 VMYLFPVPVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKE 306
+ P G+ G AY H+WR+ V P +F + MPESPR+ + G++ E
Sbjct: 312 -WAIIP-HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDE 369
Query: 307 AMKILGDAAKFNSR--------------KLPLNLEKLLK-ESVLST-NQDVGKKVQVM-- 348
A IL N R K ++L++ ES T Q +
Sbjct: 370 AWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGG 429
Query: 349 DLWRT------PLIRLISFVQYIIWFSVYLVYYGL 377
+W P +R I+ +WF++ YYGL
Sbjct: 430 GIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGL 464
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 3/143 (2%)
Query: 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYL 212
++S L F LG A G +G +SD+FGR++ L+ L+ + +L+A + L L
Sbjct: 32 SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLL 91
Query: 213 VVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYI---AISGIAYYSHN 269
V RF LG ++ + L E K ++ +G + + G+ S
Sbjct: 92 VGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG 151
Query: 270 WRLLQWVITIPTIFFLTLWWIMP 292
WR L ++ I + L +
Sbjct: 152 WRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 7e-12
Identities = 56/346 (16%), Positives = 110/346 (31%), Gaps = 44/346 (12%)
Query: 158 SLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFF 217
L F LG A +G +SD+FGR++ L+ L+ + +L+ + L LV+R
Sbjct: 35 GLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVL 94
Query: 218 LGFFCVSIVFSGFVLCMELVG----GKWLTIMGVMYLFPVPVGYIAISGIAYYSHNWRLL 273
G ++ + L + G+ L ++ + +G + + G+ WR
Sbjct: 95 QGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPL-LGGLLASLFGWRAA 153
Query: 274 QWVITIPTIFFLTLW-WIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKE 332
++ I + L ++P P +
Sbjct: 154 FLILAILALLAAVLAALLLPRPPP------------------------ESKRPKPAEEAP 189
Query: 333 SVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIGGDVYLNT 392
+ L + + V+ L L+ +F + + +Y GL L
Sbjct: 190 APLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGL---------SALLAG 240
Query: 393 IISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKF 452
++ G+ + + + R L L L LG A S SL ++
Sbjct: 241 LLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVAL 300
Query: 453 AI-----SSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIP 493
+ + ++L P + R G + + L P
Sbjct: 301 LLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
|
Length = 346 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 4e-11
Identities = 60/371 (16%), Positives = 115/371 (30%), Gaps = 31/371 (8%)
Query: 131 QWTYDSSSFGHTIISEWDLVCSNSSLESLAE--------MVFLLGVAF-----GGFFSGL 177
QW S+++ ++ +D L +A L+ A G GL
Sbjct: 10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGL 69
Query: 178 VSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELV 237
D++GR+ ++ S+V + +P + + R +G S +E
Sbjct: 70 WGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESW 129
Query: 238 GGKWLTIMGVMYLFPVPVGYIAISGIA-----YYSHNWRLLQWVITIPTIFFLTLWWIMP 292
+ + VG + + + + WR L ++ +P IF L L +P
Sbjct: 130 PKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIP 189
Query: 293 ESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWR 352
E+ W + E + V++ + +
Sbjct: 190 EAEDWKEKHAGKA---LVRTMVDILYGG------EHRIANIVMTLAAAMVQSAGKRWPTF 240
Query: 353 TPLIRLISFVQYIIWFS--VYLVYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFIL 410
L+ L+ F + Y L LS + + S I + F+
Sbjct: 241 VYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIV--VFSNIGAIVGGCVFGFLG 298
Query: 411 LKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFP 470
+GRR+ + L L + + + + I+P + E FP
Sbjct: 299 DWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFP 358
Query: 471 TKMRNLGVGAS 481
T R G+G +
Sbjct: 359 TDQRAAGLGFT 369
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 7e-11
Identities = 104/436 (23%), Positives = 167/436 (38%), Gaps = 91/436 (20%)
Query: 165 LLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAI-SPWFELYLVVRFFLGFFCV 223
L+G GG G S++FGR+ SL VL + A+ S W E GF
Sbjct: 65 LIGCIIGGALGGYCSNRFGRRD----SLKIAAVLFFISALGSAWPEF--------GFT-- 110
Query: 224 SIVFSGFVLCMELVGGKWLTIMGV---MYLFPVPVGYIAISGI----------------- 263
SI E V + + +GV L P+ + IA + I
Sbjct: 111 SIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQL 170
Query: 264 AYYSHNWRLL-----QWVIT-----------IPTIFFLTLWWIMPESPRWLVSMGRNKEA 307
Y N+ + W+ T IP + FL L + +PE+PR+L+S G+ ++A
Sbjct: 171 VVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQA 230
Query: 308 MKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDV---------GKKVQVMDLWRTPLIRL 358
IL K L + L+E S + G V V+ + +
Sbjct: 231 EGIL---RKIMGNTLA---TQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGV-------M 277
Query: 359 ISFVQYIIWFSVYLVYYGLVLNLSNIGGDV-YLNTIISGIVEFPAIVISIFILLKMGRRR 417
+S Q + +V L Y + D+ L TII G++ V++I + K GR+
Sbjct: 278 LSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKP 337
Query: 418 PLCLTTLG--AGLACLMTLGFAPGSFITISLAM---VGKFAISSSNVIIPIYTAELFPTK 472
+ LG G+ L T + I L+M V FA+S V + +E+FP
Sbjct: 338 LQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCW-VLLSEIFPNA 396
Query: 473 MRNLGVGASSVPAGVALILI----PYLWHMQSINIHF-PM---GLLGVVGVLGGLSVL-L 523
+R + + +A + P + + HF + G +GVL L +
Sbjct: 397 IRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF 456
Query: 524 LPDTTGLADNLHQLEN 539
+P+T G L ++E
Sbjct: 457 VPETKG--KTLEEMEA 470
|
Length = 479 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 4e-09
Identities = 33/179 (18%), Positives = 67/179 (37%), Gaps = 3/179 (1%)
Query: 350 LWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIG-GDVYLNTIISGIVEFPAIVISIF 408
L L+ L F+ ++ + + + + + L + G+ ++
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 409 ILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAEL 468
+ ++GRRR L L L L+ L AP + + ++ F + + + +EL
Sbjct: 234 LSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASEL 293
Query: 469 FPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLLP 525
P + R G + + L P L + + +L + +L L +LLLP
Sbjct: 294 APPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 6e-08
Identities = 102/455 (22%), Positives = 165/455 (36%), Gaps = 91/455 (20%)
Query: 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYL 212
SS+ + +G G F G ++DK GRK+ L+ ++ V +SP
Sbjct: 54 PSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKS 113
Query: 213 VV------RFFLGFF------CVSIVFSGF------------VLCMELVGGKWLTIMGVM 248
V+ RF+LG +I+ S F V M+ G + G +
Sbjct: 114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFG----ILAGAI 169
Query: 249 YLFPVPVGYIAISGIAYYSHN------------WRLLQWVITIPTIFFLTLWW--IMPES 294
V G+ A + WR+L +P + L L++ +PE+
Sbjct: 170 VALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPAL--LALYFRLTIPET 227
Query: 295 PRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKES--VLSTNQDVGKKVQVMDLWR 352
PR+ + ++ E + D + K+ +++ K S V WR
Sbjct: 228 PRYTADVAKDVE--QAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWR 285
Query: 353 TPLIRLISFVQYIIWFSVYLVYYGLVLN----LSNIG------GDVYL---------NTI 393
L + WF + + +YG+ LN LS IG + N I
Sbjct: 286 HGKHLLGTAGS---WFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLI 342
Query: 394 ISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFA-----PGSFITI-SLA 447
I+ P +++F++ +GR+ P+ L LGFA F+ I LA
Sbjct: 343 IALAGTVPGYWVTVFLVDIIGRK-PIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLA 401
Query: 448 MVGKFAISSSNVIIPIYTAELFPTKMRNL--GVGASSVPAG--VALILIPYLWHMQSINI 503
FA N I E+FPT+ R+ G+ A+S AG + YL
Sbjct: 402 QF--FANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTK 459
Query: 504 HFPMG--------LLGVVGVLGGLSVLLLPDTTGL 530
+P G + + LG L LL+P+T G
Sbjct: 460 GYPTGIWMGHVLEIFALFMFLGILFTLLIPETKGK 494
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 9e-07
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 16/142 (11%)
Query: 163 VFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFC 222
+ LGVA G L++ + R++ L+G L +V +L A++P F + L+ R G
Sbjct: 56 AYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAG-LA 114
Query: 223 VSIVFS-GFVLCMELVG-GKWLTIMGVMYL-------FPVPVGYIAISGIAYYSHNWRLL 273
+ +S L LV GK + +++ VP+G + + WR
Sbjct: 115 HGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLG-TFLGQLF----GWRAT 169
Query: 274 QWVIT-IPTIFFLTLWWIMPES 294
I + + L LW ++P S
Sbjct: 170 FLAIAVLALLALLLLWKLLPPS 191
|
Length = 394 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-06
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 4/135 (2%)
Query: 164 FLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCV 223
+ LG SGL++D+FGRK L+ L ++ + A+S + ++ RF GF
Sbjct: 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAA 66
Query: 224 SIVFSGFVLCMELV-GGKWLTIMGVMYLFPV--PVGYIAISGIAYYSHNWRLLQWVITIP 280
+ +G L ++ + +G+M P+ + G+ WR + I
Sbjct: 67 FALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAIL 126
Query: 281 TIF-FLTLWWIMPES 294
+ F+ L +++PE+
Sbjct: 127 ALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 76/393 (19%), Positives = 134/393 (34%), Gaps = 64/393 (16%)
Query: 164 FLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCV 223
F G G F G + D+FG +K L +V V L A + + ++R LG
Sbjct: 38 FSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLG---- 93
Query: 224 SIVFSGFVLCMELVGGKWL------TIMGVMYLFPVPVGYI---AISGIAYYSHNWRLLQ 274
+ F + L+ W T + + +G I + G +W+
Sbjct: 94 -AAEAPFFPGIILIVASWFPASERATAVSIFNSA-QGLGGIIGGPLVGWILIHFSWQWAF 151
Query: 275 WVITIPTIFFLTLWWIM----PESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLL 330
+ + I + LW P+ +WL + +L +
Sbjct: 152 IIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTP-------- 203
Query: 331 KESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQY---------IIWFSVYLVYYGLVLNL 381
KK Q+ +L + + ++ Q+ + WF YLV L++
Sbjct: 204 ------------KKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLV-QERGLSI 250
Query: 382 SNIGGDVYLNTIISGIVEFPAIVISIFI-LLKMGRRRPLCLTTLGAGLAC--LMTLGFAP 438
G + GIV F +++ + L + R + L A +A L L FA
Sbjct: 251 LEAG----FMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT 306
Query: 439 GSFIT----ISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPY 494
++L +G F + + + + ++ P + L G + + I+ P
Sbjct: 307 NYVNIPYAALALVALGFFGLGAGAIGWAL-ISDNAPGNIAGLTGGLINSLGNLGGIVGPI 365
Query: 495 LWHMQSINIHFPMGLLGVVGVL---GGLSVLLL 524
+ + G L VV L G LS LLL
Sbjct: 366 VIGAIAATTGSFAGALMVVAALALIGALSYLLL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 8e-06
Identities = 78/332 (23%), Positives = 121/332 (36%), Gaps = 57/332 (17%)
Query: 165 LLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVS 224
+LG+ G G ++D+ GRK+ L+ S+ + + A + F LV R G
Sbjct: 60 ILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGG 119
Query: 225 IVFSGFVLCMELVGGKWL-TIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITI- 279
+ + L E VG + T + +MY VP G S I + WR + +V +
Sbjct: 120 ALPNLIALTSEAVGPRLRGTAVSLMYC-GVPFGGALASVIGVLAAGDAAWRHIFYVGGVG 178
Query: 280 PTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQ 339
P + L +PES + A ++ L L E
Sbjct: 179 PLLLVPLLMRWLPESRAFA---------------QAAGAGKQRAPVLRALFGE------- 216
Query: 340 DVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGL-------VLNLSNIGGDVYLNT 392
G+ + LW + LI + W LV GL V NIGG
Sbjct: 217 --GRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGG------ 268
Query: 393 IISGIVEFPAIVISIFILLKMGRRRPLCLTTL--GAGLACLMTLGFAPGS-FITISLAMV 449
+ S+ I M R RP + L LA L L AP + ++
Sbjct: 269 ----------ALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAA 318
Query: 450 GKFAISSSNVIIPIYTAELFPTKMRNLGVGAS 481
G F + +V+ + +PT++R GVGA+
Sbjct: 319 GLFVVGGQSVLYAL-APLFYPTQVRGTGVGAA 349
|
Length = 406 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 4/144 (2%)
Query: 388 VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACL-MTLGFAPGSFITISL 446
+Y + + P ++S ++ K+GR R L + + + ++C ++ G + + I + L
Sbjct: 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIAL-L 655
Query: 447 AMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALIL-IPYLWHMQSINIHF 505
+ G +I++ N + + T EL+P+ R G + A +L I I
Sbjct: 656 CLFGGLSIAAWNAL-DVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAA 714
Query: 506 PMGLLGVVGVLGGLSVLLLPDTTG 529
P+ GGL L LPDT G
Sbjct: 715 PILFASAALACGGLLALKLPDTRG 738
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Query: 164 FLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCV 223
+LLG A G G +SD++GR+ L+ L + + +A+S E LV+RF F
Sbjct: 49 YLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGAS 108
Query: 224 SIVFSGFVLCMELVGG----KWLTIMGVMYLFPVPVGYIAISGIAYYSHNWRLLQWVITI 279
+ L ++ G + +I+ + V + I + W + +++
Sbjct: 109 AGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIFAFLSL 167
Query: 280 PTIFFLTL-WWIMPES 294
I L ++I+PE+
Sbjct: 168 AGILLSALIFFILPET 183
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 3/170 (1%)
Query: 358 LISFVQYIIWFSVYLVYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRR 417
L F+ + + L +L L + +++ ++ + GRRR
Sbjct: 6 LGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRR 65
Query: 418 PLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLG 477
L L L L L+ + + + ++G + AE FP K R
Sbjct: 66 VLLLGLLLFALGSLLLAFASSLWLLLVGRFLLG-LGGGALYPAAAALIAEWFPPKERGRA 124
Query: 478 VGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLLP 525
+G S G+ +L P L +S+ + +L ++G+L L +L L
Sbjct: 125 LGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 4/170 (2%)
Query: 358 LISFVQYIIWFSVYLVYYGLVLNLSNIGGDVY-LNTIISGIVEFPAIVISIFILLKMGRR 416
L +F+ + + + I L + A ++ + + GRR
Sbjct: 3 LAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRR 62
Query: 417 RPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNL 476
R L + L L L+ L + + + + G + A+ FP + R
Sbjct: 63 RVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQG-LGGGALFPAAAALIADWFPPEERGR 121
Query: 477 GVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLL 524
+G S G+ L P L +L ++ +L + LL
Sbjct: 122 ALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALL 171
|
Length = 346 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 35/142 (24%), Positives = 51/142 (35%), Gaps = 19/142 (13%)
Query: 368 FSVYLVYYGL-VLNLSNIGGDVYLNTIISGIVEFPAIVISIFILL--KMGRRRPL-CLTT 423
+ YL Y L LS L ++S I+ F I I + L ++GRR L T
Sbjct: 238 ITTYLPTYLTQTLGLSA--NSALLVLMLSLILFF--ITIPLSGALSDRIGRRPVLIIFTV 293
Query: 424 LGAGLAC--LMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVG-- 479
L A LA LM L + + L + + + ELFPT++R G
Sbjct: 294 LAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMGSFLPELFPTEVRYTGASLA 353
Query: 480 -------ASSVPAGVALILIPY 494
+A L+
Sbjct: 354 YNLAGAIFGGFAPYIAAALVAM 375
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 565 | |||
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| KOG0255|consensus | 521 | 100.0 | ||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0253|consensus | 528 | 100.0 | ||
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| KOG0569|consensus | 485 | 100.0 | ||
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| KOG0254|consensus | 513 | 100.0 | ||
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.98 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.98 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.97 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.97 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.97 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.97 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.97 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.97 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.97 | |
| KOG0252|consensus | 538 | 99.97 | ||
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.97 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.97 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.97 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.97 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.96 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.96 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.96 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.96 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.96 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.96 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.96 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.96 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.95 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.95 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.95 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.95 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.95 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.95 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.95 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.95 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.95 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.95 | |
| KOG2532|consensus | 466 | 99.95 | ||
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.95 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.95 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.95 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.95 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.95 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.95 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.95 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.94 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.94 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.94 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.94 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.94 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.94 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.94 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.94 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.94 | |
| KOG2533|consensus | 495 | 99.94 | ||
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.94 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.94 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.94 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.93 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.93 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.93 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.93 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.93 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.93 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.92 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.92 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.92 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.91 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.91 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.91 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.91 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.91 | |
| KOG1330|consensus | 493 | 99.91 | ||
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.91 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.9 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.9 | |
| KOG2504|consensus | 509 | 99.9 | ||
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.9 | |
| KOG2615|consensus | 451 | 99.9 | ||
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.89 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.88 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.88 | |
| KOG3764|consensus | 464 | 99.88 | ||
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.87 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.86 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.84 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.83 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.83 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.83 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.83 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.82 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.82 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.79 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.79 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.79 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.78 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.75 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.74 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.72 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.72 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.71 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.7 | |
| KOG4686|consensus | 459 | 99.66 | ||
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.56 | |
| KOG2563|consensus | 480 | 99.53 | ||
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.5 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.47 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.45 | |
| KOG2816|consensus | 463 | 99.4 | ||
| KOG2325|consensus | 488 | 99.39 | ||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.37 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.33 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.3 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.14 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.14 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.13 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.13 | |
| KOG3098|consensus | 461 | 99.13 | ||
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.13 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.12 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.12 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.11 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.1 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.1 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.09 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.09 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.09 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.08 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.08 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.08 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.07 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.07 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.06 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.05 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.05 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.04 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.03 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.03 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.03 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.03 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.02 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.02 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.02 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.02 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.01 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.01 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.99 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.99 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.98 | |
| KOG3626|consensus | 735 | 98.97 | ||
| PRK10504 | 471 | putative transporter; Provisional | 98.97 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.97 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.95 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.95 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.94 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.94 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.94 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.93 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.93 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.93 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.93 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.92 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.92 | |
| KOG2615|consensus | 451 | 98.91 | ||
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.91 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.9 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.9 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.9 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.9 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.89 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.88 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.88 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.87 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.87 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.87 | |
| KOG3762|consensus | 618 | 98.83 | ||
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.8 | |
| KOG0255|consensus | 521 | 98.79 | ||
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.79 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.79 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.78 | |
| KOG3764|consensus | 464 | 98.77 | ||
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.77 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.75 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.75 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.75 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.74 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.74 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.73 | |
| KOG0569|consensus | 485 | 98.72 | ||
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.71 | |
| KOG1330|consensus | 493 | 98.71 | ||
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.7 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.7 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.69 | |
| KOG0254|consensus | 513 | 98.68 | ||
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.67 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.66 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.64 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.62 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.59 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.59 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.59 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.58 | |
| KOG4332|consensus | 454 | 98.58 | ||
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.56 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.55 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.54 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.54 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.54 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.52 | |
| KOG3810|consensus | 433 | 98.51 | ||
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.51 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.51 | |
| KOG0253|consensus | 528 | 98.5 | ||
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.49 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.47 | |
| KOG2532|consensus | 466 | 98.46 | ||
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.43 | |
| KOG2504|consensus | 509 | 98.43 | ||
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.41 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.41 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.39 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.38 | |
| KOG2533|consensus | 495 | 98.31 | ||
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.31 | |
| KOG0637|consensus | 498 | 98.29 | ||
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.29 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.23 | |
| KOG0252|consensus | 538 | 98.22 | ||
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.2 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.15 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.13 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.11 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.09 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.07 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.97 | |
| KOG4686|consensus | 459 | 97.97 | ||
| KOG3574|consensus | 510 | 97.95 | ||
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.88 | |
| KOG3762|consensus | 618 | 97.87 | ||
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.86 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.83 | |
| PRK11462 | 460 | putative transporter; Provisional | 97.8 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 97.76 | |
| KOG2816|consensus | 463 | 97.74 | ||
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.66 | |
| KOG2325|consensus | 488 | 97.65 | ||
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.62 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.62 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.48 | |
| KOG1237|consensus | 571 | 97.42 | ||
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.41 | |
| KOG1479|consensus | 406 | 97.34 | ||
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.28 | |
| KOG2563|consensus | 480 | 97.1 | ||
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.06 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.03 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.95 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 96.93 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.77 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.73 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.5 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.24 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.05 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.72 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.22 | |
| KOG3098|consensus | 461 | 95.2 | ||
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 95.14 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.58 | |
| KOG3880|consensus | 409 | 94.57 | ||
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 94.32 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 93.91 | |
| KOG3626|consensus | 735 | 92.28 | ||
| KOG3880|consensus | 409 | 90.9 | ||
| KOG0637|consensus | 498 | 90.82 | ||
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 90.71 | |
| KOG3097|consensus | 390 | 89.17 | ||
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 88.32 | |
| KOG1479|consensus | 406 | 87.5 | ||
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 87.47 | |
| KOG2601|consensus | 503 | 83.11 | ||
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 82.53 | |
| KOG4332|consensus | 454 | 81.51 |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-58 Score=486.40 Aligned_cols=489 Identities=37% Similarity=0.666 Sum_probs=413.9
Q ss_pred CCCChHHHHHHHHHHhhhHHHHHHHHHhhhhccCCcccccCCcCCCCCChhhhhhccCCC--CCCCCCceeccCCCCCCc
Q psy17080 36 GDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTLTLDQWKNLSSIS--GVPYNPCNILDLDYSLPY 113 (565)
Q Consensus 36 g~~G~~Q~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~C~~~~~~~~~~~~~~~~~~~~~--~~~~~~C~~~~~~~~~~~ 113 (565)
|+|||||++++++++++.++.++|.++.+|+..+|+|||+.|+. .+.+.++|++.+.+. ++++++|.+++.+...+.
T Consensus 1 g~~g~~q~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~c~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (505)
T TIGR00898 1 GEFGPFQRRTFLLLALPIALLAFHFVLIVFLGATPEHHCRLPDA-ANLSSRCELNLTLPRLPDGRPESCLRFMVDQWANP 79 (505)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCCCc-ccCChHhHhceeccCCCCCCCCCCccccccchhhh
Confidence 79999999999999999999999999999999999999998843 345566688877664 346789988766521000
Q ss_pred -----cccccccCCCCCcccCCC-eEeCCCCcccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhh
Q psy17080 114 -----STLLNIRRDVTAVRPCLQ-WTYDSSSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKA 187 (565)
Q Consensus 114 -----~~~~~~~~~~~~~~~C~~-~~y~~~~~~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~ 187 (565)
..............+|.+ |.|+.+.+.+++.+|||++|++.++.+++.+++.+|.+++++++|+++||+|||++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~ 159 (505)
T TIGR00898 80 SLLGCEPLKLSDLGLAATEPCLDGWEYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKV 159 (505)
T ss_pred cccccccchhcccCCCCCCCCCCCcEecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHH
Confidence 000000001234567765 99998877899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh
Q psy17080 188 LMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS 267 (565)
Q Consensus 188 l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~ 267 (565)
++++.++.+++.++++++++++.+++.|++.|++.++..+...+++.|++|+++|+++.++...++.+|.++++.+++.+
T Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 239 (505)
T TIGR00898 160 LLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI 239 (505)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccch
Q psy17080 268 HNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQV 347 (565)
Q Consensus 268 ~~Wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (565)
.+||+.+++.+++.++..+..+++||+|+|+..+++.+++++.+++.++.|+...+.+..+...+ ++...++++.++
T Consensus 240 ~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 316 (505)
T TIGR00898 240 PDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLE---KDLSSSKKQYSF 316 (505)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhh---hhhhhccCCCcH
Confidence 88999999999988887777788999999999999999999999999988876554433221111 111111224578
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHhhhhhhhccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q psy17080 348 MDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAG 427 (565)
Q Consensus 348 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~ 427 (565)
++++++|.++..++...+.|+.....||+..++.+..+.+.+....+.++.++++.++.+++.||+|||+.+.++.++.+
T Consensus 317 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~ 396 (505)
T TIGR00898 317 LDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAG 396 (505)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 89999999999999888889998899999999888888888888888899999999999999999999999999998888
Q ss_pred HHHHHHhhcCCch--HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17080 428 LACLMTLGFAPGS--FITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWHMQSINIHF 505 (565)
Q Consensus 428 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~ 505 (565)
++++++. +.++. +...+..++.+++.+..++..+.+.+|++|++.|++++|+.++.+.+|++++|++......+...
T Consensus 397 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~ 475 (505)
T TIGR00898 397 VALLLLL-FVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFL 475 (505)
T ss_pred HHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 8877776 44433 44455566677777788889999999999999999999999999999999999995566677788
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCC
Q psy17080 506 PMGLLGVVGVLGGLSVLLLPDTTG 529 (565)
Q Consensus 506 ~~~~~~~~~~i~~~~~~~l~et~~ 529 (565)
++.+++++.++++++.+++|||++
T Consensus 476 ~~~~~~~~~~~~~~~~~~lpet~~ 499 (505)
T TIGR00898 476 PLVLFGGLALLAGILTLFLPETKG 499 (505)
T ss_pred HHHHHHHHHHHHHHHHHcCcCCCC
Confidence 899999999998888889999988
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-49 Score=416.70 Aligned_cols=496 Identities=38% Similarity=0.609 Sum_probs=406.9
Q ss_pred ChhhhHHhhcCCCChHHHHHHHHHHhhhHHHHHHHHHhhhhccCCcccccCCcCCCCCChhhhhhccCCCCCCCCCceec
Q psy17080 26 VPEDVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTLTLDQWKNLSSISGVPYNPCNIL 105 (565)
Q Consensus 26 ~~~~~l~~~~g~~G~~Q~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 105 (565)
+.|+++++ +|++|+||+....+.++...+.+.|.+..+|....|+|+|.. |..... ..++|+++
T Consensus 2 ~~~~~~~~-~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----------~~~~~~----~~~~c~~~ 65 (521)
T KOG0255|consen 2 DLDEILSS-VGDFGRYQKLLLLLLGLPSIFSALHSFAQIFLAFVPDHHCTE-----------WGCLND----AEDSCLVY 65 (521)
T ss_pred chHHHHHH-hcCCcHHHHHHHHHHHHHHhHHHHHHHHHHhhccCCCchhhh-----------hhcccC----Ccccceec
Confidence 46777776 999999999999999999999999999999999999988761 111100 33566654
Q ss_pred cC-CCCCCccccccccC---CCCCcccCC-CeEeCCCCcccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccc
Q psy17080 106 DL-DYSLPYSTLLNIRR---DVTAVRPCL-QWTYDSSSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSD 180 (565)
Q Consensus 106 ~~-~~~~~~~~~~~~~~---~~~~~~~C~-~~~y~~~~~~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~D 180 (565)
.. +++ .....++.. .......|. +|.|+.+....++..|++++|++.+...+..+++++|.++|++++|+++|
T Consensus 66 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD 143 (521)
T KOG0255|consen 66 WDPTLD--PANPLNWPSWKKWLLVIVICLDGWVYDYGSSVYSIVSEWNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSD 143 (521)
T ss_pred ccCccC--cCCccccccccccccccccccceeEecCCCCcccccchhceeeCcHhHHHHHHHHHHHHHHHHHhhheehHh
Confidence 32 111 000011110 112344554 69999888788889999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHH
Q psy17080 181 KFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAI 260 (565)
Q Consensus 181 r~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~ 260 (565)
|+|||++++.++++..++.+++++++|++.+++.|++.|++.++...+..+++.|++++++|+.+..+....+..|.+..
T Consensus 144 ~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~ 223 (521)
T KOG0255|consen 144 RFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLP 223 (521)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999666666676777
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHH-HHhhhhcc
Q psy17080 261 SGIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLK-ESVLSTNQ 339 (565)
Q Consensus 261 ~~l~~~~~~Wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 339 (565)
+..+++..+||+.+++..++.++.++.+++.||||||+..+++.+++.+.++++++.|+............ ....+...
T Consensus 224 ~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~ 303 (521)
T KOG0255|consen 224 AGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLL 303 (521)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhh
Confidence 77778888999999999999988888777778999999999999999999999999885443222111111 11222222
Q ss_pred ccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhhhhhhccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHH
Q psy17080 340 DVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPL 419 (565)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l 419 (565)
..+++..+.++++.|++++.++...+.|+.....||++.+....++.+.+....+.+..+.++....+...|+.|||...
T Consensus 304 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~ 383 (521)
T KOG0255|consen 304 FTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPL 383 (521)
T ss_pred ccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHH
Confidence 23344668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCchH--HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy17080 420 CLTTLGAGLACLMTLGFAPGSF--ITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWH 497 (565)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~ 497 (565)
..+.++.+++++.......... ...+...++.++.+.++...+.+.+|++|+..|+.+.+..++.+.+|++++|++..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~ 463 (521)
T KOG0255|consen 384 FLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPL 463 (521)
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988884433333 57777888889999999999999999999999999999999999999999999954
Q ss_pred HH-HhhhhhHHHHHHHHHHHHHHHH-hhcccCCC--CCccHHHhhh
Q psy17080 498 MQ-SINIHFPMGLLGVVGVLGGLSV-LLLPDTTG--LADNLHQLEN 539 (565)
Q Consensus 498 ~~-~~~~~~~~~~~~~~~~i~~~~~-~~l~et~~--~~~~~~~~~~ 539 (565)
.. ......++.+++.+..+.+++. +++|||++ +|++.+|.++
T Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~~ 509 (521)
T KOG0255|consen 464 LLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAEN 509 (521)
T ss_pred HHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHHh
Confidence 33 3334444555576776666655 89999999 8888888775
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=380.60 Aligned_cols=425 Identities=23% Similarity=0.352 Sum_probs=335.9
Q ss_pred CChhhhHHhhcCCCChHHHHHHHHHHhhhHHHHHHHHHhhhhccCCcccccCCcCCCCCChhhhhhccCCCCCCCCCcee
Q psy17080 25 DVPEDVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTLTLDQWKNLSSISGVPYNPCNI 104 (565)
Q Consensus 25 ~~~~~~l~~~~g~~G~~Q~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 104 (565)
..+|+++++ .| +|++|+++++++++..+..++......++
T Consensus 150 ~~~d~~l~~-~~-~~~~~~~l~~i~~l~~~~~g~d~~~is~i-------------------------------------- 189 (742)
T TIGR01299 150 QQYELIIQE-CG-HGRFQWALFFVLGLALMADGVEVFVVGFV-------------------------------------- 189 (742)
T ss_pred HHHHHHHHH-cC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------
Confidence 357888888 77 69999999998888887776655544443
Q ss_pred ccCCCCCCccccccccCCCCCcccCCCeEeCCCCcccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccc
Q psy17080 105 LDLDYSLPYSTLLNIRRDVTAVRPCLQWTYDSSSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGR 184 (565)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~C~~~~y~~~~~~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Gr 184 (565)
.|.+.+++++ +..+.+++.+++++|.++|++++|+++||+||
T Consensus 190 -----------------------------------lp~i~~~~gl---s~~~~g~l~s~~~lG~iiG~li~G~LsDR~GR 231 (742)
T TIGR01299 190 -----------------------------------LPSAEKDLCI---PDSGKGMLGLIVYLGMMVGAFFWGGLADKLGR 231 (742)
T ss_pred -----------------------------------HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 2333445566 66778999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHH
Q psy17080 185 KKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIA 264 (565)
Q Consensus 185 r~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~ 264 (565)
|+++++++++.++++++++++++++.++++|++.|++.++..+...+++.|++|+++|++..++...++.+|.++++.++
T Consensus 232 R~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la 311 (742)
T TIGR01299 232 KQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA 311 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888765
Q ss_pred HHh----------------cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCC--chh-
Q psy17080 265 YYS----------------HNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKL--PLN- 325 (565)
Q Consensus 265 ~~~----------------~~Wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~--~~~- 325 (565)
..+ .+||+++++.++++++.++..+++||||+|+..++|.+++.+.++++++.|++.. +..
T Consensus 312 ~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~ 391 (742)
T TIGR01299 312 WAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKV 391 (742)
T ss_pred HHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHH
Confidence 432 3699999999998888888888999999999999999999999999988775432 111
Q ss_pred HH-HHHHHHhhhh-----ccccC----------------cccchhhccccHHHHHHHHHHHHHHHHHHHhhhhhhhccCc
Q psy17080 326 LE-KLLKESVLST-----NQDVG----------------KKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSN 383 (565)
Q Consensus 326 ~~-~~~~~~~~~~-----~~~~~----------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (565)
.. +..+.....+ +.... ...+++++|+ +.+++.++...+.|++..+.||++..+.+.
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~-~~~~~~tl~l~~~wf~~~~~yygl~~w~P~ 470 (742)
T TIGR01299 392 FSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFN-PEVREITIKLMGVWFTLSFGYYGLSVWFPD 470 (742)
T ss_pred HHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0011100000 00000 0013556665 456777888888999988888887655331
Q ss_pred C----------------------------------------------C--------------------------------
Q psy17080 384 I----------------------------------------------G-------------------------------- 385 (565)
Q Consensus 384 ~----------------------------------------------~-------------------------------- 385 (565)
+ +
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 550 (742)
T TIGR01299 471 MIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCT 550 (742)
T ss_pred HHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccc
Confidence 1 0
Q ss_pred --------------------------------------------CcHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHH
Q psy17080 386 --------------------------------------------GDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCL 421 (565)
Q Consensus 386 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~ 421 (565)
...+...++.+++.+++.+++++++||+|||+++++
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~ 630 (742)
T TIGR01299 551 FIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAG 630 (742)
T ss_pred hhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 001333556678889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy17080 422 TTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLW-HMQS 500 (565)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~-~~~~ 500 (565)
++++.+++++++. +.++....+++.++.+++.+..++..+++++|++|++.|++++|+.++.+++|++++|++. .+..
T Consensus 631 ~~~lsai~~ll~~-~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~ 709 (742)
T TIGR01299 631 SMVLSCISCFFLS-FGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG 709 (742)
T ss_pred HHHHHHHHHHHHH-HHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888777 5555555555556667777778889999999999999999999999999999999999983 3434
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhcccCCC
Q psy17080 501 INIHFPMGLLGVVGVLGGLSVLLLPDTTG 529 (565)
Q Consensus 501 ~~~~~~~~~~~~~~~i~~~~~~~l~et~~ 529 (565)
.+...++++++++.++++++.+++|||++
T Consensus 710 ~~~~~pf~i~a~~lll~~ll~~~LPET~~ 738 (742)
T TIGR01299 710 ITKAAPILFASAALACGGLLALKLPDTRG 738 (742)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 45677888888888888888888999987
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-44 Score=329.32 Aligned_cols=422 Identities=23% Similarity=0.418 Sum_probs=352.9
Q ss_pred ChhhhHHhhcCCCChHHHHHHHHHHhhhHHHHHHHHHhhhhccCCcccccCCcCCCCCChhhhhhccCCCCCCCCCceec
Q psy17080 26 VPEDVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTLTLDQWKNLSSISGVPYNPCNIL 105 (565)
Q Consensus 26 ~~~~~l~~~~g~~G~~Q~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 105 (565)
..||..+. +| |||||+.++++....|+..++.++...++..
T Consensus 62 tv~ea~~a-ig-fgrfq~yl~~~ag~gwmad~m~~m~~s~i~~------------------------------------- 102 (528)
T KOG0253|consen 62 TVDEAMNA-IG-FGRFQWYLFFVAGMGWMADAMEMMLLSLILP------------------------------------- 102 (528)
T ss_pred eehhhhhh-cC-cccchhhHHHHhhhHHHHHHHHHHHHHHHHH-------------------------------------
Confidence 46777888 88 9999999999999999999888887777632
Q ss_pred cCCCCCCccccccccCCCCCcccCCCeEeCCCCcccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccch
Q psy17080 106 DLDYSLPYSTLLNIRRDVTAVRPCLQWTYDSSSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRK 185 (565)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~C~~~~y~~~~~~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr 185 (565)
.....|++ +..+.+++......|..+++..+|.++|++|||
T Consensus 103 ------------------------------------~l~~~w~~---s~~q~~llt~~v~~gmllga~~w~l~~d~~grr 143 (528)
T KOG0253|consen 103 ------------------------------------ALDEVWGP---SEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRR 143 (528)
T ss_pred ------------------------------------HHHhhhch---hhhhhhHHHHHHHhhhhhhhhhhheehhhhhcc
Confidence 11222344 666778999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHH
Q psy17080 186 KALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAY 265 (565)
Q Consensus 186 ~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~ 265 (565)
+.+.+..+..++...+.++++|+.++.+.|.+.|+|.|+ .|...++-.|..|..+|...+.+. ..|.+|.+....+++
T Consensus 144 ~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law 221 (528)
T KOG0253|consen 144 KGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAW 221 (528)
T ss_pred hhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 888899999999999999887777 899999999888887
Q ss_pred Hh---cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHH------HHHHHHh--
Q psy17080 266 YS---HNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLE------KLLKESV-- 334 (565)
Q Consensus 266 ~~---~~Wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~------~~~~~~~-- 334 (565)
.. .||||.....+.+..+...+.+++|||||++..+|+.++|.+.++++++.|+.+.+.... +..+++.
T Consensus 222 ~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~ 301 (528)
T KOG0253|consen 222 GVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDL 301 (528)
T ss_pred HHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhch
Confidence 64 499999999888888888888999999999999999999999999999999987553211 1111111
Q ss_pred --hhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhhhhhhccCcC---------------------------C
Q psy17080 335 --LSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNI---------------------------G 385 (565)
Q Consensus 335 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~ 385 (565)
.+....++...+..+++ .|.+++..+.....|+.+.+.||+..+....+ .
T Consensus 302 ~~~~~~a~ke~rg~~~nLl-sp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~ 380 (528)
T KOG0253|consen 302 DDSKSSAAKEVRGGTTNLL-SPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSV 380 (528)
T ss_pred hhhhhccccccccchHhhc-ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccc
Confidence 01112233445566666 57899999999999999999999876432110 1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17080 386 GDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYT 465 (565)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (565)
...|...++.++.+++|.++.++++||+|||+.+...+++.+++.+++. ...+.....++.+.+.+++.+.+.+.|+|+
T Consensus 381 ~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~-~c~~rn~~tvllf~arafisg~fqvaYvYt 459 (528)
T KOG0253|consen 381 AKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLT-TCKTRNAYTVLLFTARAFISGAFQVAYVYT 459 (528)
T ss_pred hhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHH-HhcCcchhHHHHHHHHHHHhchheEEEEec
Confidence 1236678889999999999999999999999999999999999888877 555555666777888999999999999999
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhcc-cCCC
Q psy17080 466 AELFPTKMRNLGVGASSVPAGVALILIPYLWHMQSINIHFPMGLLGVVGVLGGLSVLLLP-DTTG 529 (565)
Q Consensus 466 ~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~-et~~ 529 (565)
.|++|+..|+++.|.++.++++|+++.|++..........+..+++.++++++++..++| |||+
T Consensus 460 PEVyPTavRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkG 524 (528)
T KOG0253|consen 460 PEVYPTAVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPIETKG 524 (528)
T ss_pred CcccchhhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeeeccCC
Confidence 999999999999999999999999999999866677788899999999999999887766 7877
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=338.25 Aligned_cols=428 Identities=20% Similarity=0.262 Sum_probs=297.7
Q ss_pred hHHhhcCCCChHHHHHHHHHHhhhHHHHHHHHHhhhhccCCcccccCCcCCCCCChhhhhhccCCCCCCCCCceeccCCC
Q psy17080 30 VINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIPASLSTLTLDQWKNLSSISGVPYNPCNILDLDY 109 (565)
Q Consensus 30 ~l~~~~g~~G~~Q~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 109 (565)
.+|+ .| ||++|+++++++++..+..++......++..... |+.
T Consensus 4 ~~~~-~~-~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~--~~~--------------------------------- 46 (502)
T TIGR00887 4 EADT-AP-FGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLG--YVY--------------------------------- 46 (502)
T ss_pred hhhc-cc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHh---------------------------------
Confidence 3455 56 9999999999999999888888777666543211 100
Q ss_pred CCCccccccccCCCCCcccCCCeEeCCCCcccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHH
Q psy17080 110 SLPYSTLLNIRRDVTAVRPCLQWTYDSSSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALM 189 (565)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~C~~~~y~~~~~~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~ 189 (565)
| . .+.++ +..+.+++.+.+.+|.+++++++|+++||+|||+++.
T Consensus 47 ----------------------~-------~----~~~~~---~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~ 90 (502)
T TIGR00887 47 ----------------------Y-------H----GKGPL---PSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYG 90 (502)
T ss_pred ----------------------c-------c----Ccccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 0 0 00112 3445689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcch------hHHHHHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHH
Q psy17080 190 GSLVFQLVLGVLVAISPW------FELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGI 263 (565)
Q Consensus 190 ~~~~l~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l 263 (565)
.+.++..+++++++++++ ++.+++.|++.|++.|+..+...+++.|++|+++|+++.++.+....+|.++++.+
T Consensus 91 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~ 170 (502)
T TIGR00887 91 MELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIV 170 (502)
T ss_pred HHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876 78999999999999999999999999999999999999999999999998888776
Q ss_pred HHHh--------------------------cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHH-HHHHHHHHHHH
Q psy17080 264 AYYS--------------------------HNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNK-EAMKILGDAAK 316 (565)
Q Consensus 264 ~~~~--------------------------~~Wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~-~a~~~l~~~~~ 316 (565)
+..+ .+||+++.+.++++++.++..+++||||||+..++|.+ ++++.+++..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~ 250 (502)
T TIGR00887 171 ALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQ 250 (502)
T ss_pred HHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhc
Confidence 5431 26999999999998888888889999999999988874 46666666543
Q ss_pred HcCCCCchhHHHHHHHHhhhhccccCcccchhhccccH---HHHHHHHHHHHHHHHHHHhhhhhhhcc----CcCCCcH-
Q psy17080 317 FNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTP---LIRLISFVQYIIWFSVYLVYYGLVLNL----SNIGGDV- 388 (565)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~- 388 (565)
.+..+..++.. +. +++ ++..+.+++++++++ +.++.++.....++...+.+|+...+. ...+.+.
T Consensus 251 ~~~~~~~~~~~----~~-~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~ 323 (502)
T TIGR00887 251 VKIEAEPDEVE----KA-STA--VEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPP 323 (502)
T ss_pred cccccCccccc----ch-hcc--ccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCC
Confidence 22211111110 00 000 011123567777642 222334444445555555555532221 1122110
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCC--chHHHHHHHHHHH-
Q psy17080 389 --------------YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAP--GSFITISLAMVGK- 451 (565)
Q Consensus 389 --------------~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~- 451 (565)
.....+..++.+++.++.+++.||+|||+.++.+..+.+++++++..... .........++..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 403 (502)
T TIGR00887 324 AATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQF 403 (502)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 01223344566778899999999999999988888777766655542211 1111111111211
Q ss_pred HHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHH--HHHH----------hhhhhHHHHHHHHHHHHHH
Q psy17080 452 FAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLW--HMQS----------INIHFPMGLLGVVGVLGGL 519 (565)
Q Consensus 452 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~--~~~~----------~~~~~~~~~~~~~~~i~~~ 519 (565)
++.....+..+.+.+|++|++.|+++.|+.+.++.+|++++|.+. ..+. .+....+.+++++++++.+
T Consensus 404 ~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i 483 (502)
T TIGR00887 404 FANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL 483 (502)
T ss_pred HHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence 211223456778899999999999999999999999999999883 2231 2334578888888888777
Q ss_pred HHhhcccCCCCCccHHHhhh
Q psy17080 520 SVLLLPDTTGLADNLHQLEN 539 (565)
Q Consensus 520 ~~~~l~et~~~~~~~~~~~~ 539 (565)
..+++|||++ ++.||.++
T Consensus 484 ~~~~lpEt~~--~~leei~~ 501 (502)
T TIGR00887 484 FTLLIPETKG--KSLEELSG 501 (502)
T ss_pred HheEeccCCC--CCHHhhhC
Confidence 7778899999 66776653
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=306.08 Aligned_cols=380 Identities=21% Similarity=0.300 Sum_probs=288.4
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhc---chhHHHHHHHHHHhhhhhhhHhhhhh
Q psy17080 155 SLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAIS---PWFELYLVVRFFLGFFCVSIVFSGFV 231 (565)
Q Consensus 155 ~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~ 231 (565)
...+.+.+++.+|.++|+++.|+++||+|||..++++.++..++.++..++ +++.+++++|++.|+..|......+.
T Consensus 60 ~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pm 139 (485)
T KOG0569|consen 60 LLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPM 139 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 346889999999999999999999999999999999999888888777654 78999999999999999999999999
Q ss_pred hhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh-----cchhHHHHHHHHHHHHHHHHhhhcccchhHHHh-cCCHH
Q psy17080 232 LCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS-----HNWRLLQWVITIPTIFFLTLWWIMPESPRWLVS-MGRNK 305 (565)
Q Consensus 232 ~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-----~~Wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~-~~~~~ 305 (565)
++.|..|++.||....+.+.+..+|.+++..++... ..|++.+....+++++.++...++|||||||.. |++.+
T Consensus 140 yl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~ 219 (485)
T KOG0569|consen 140 YLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEE 219 (485)
T ss_pred HHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHH
Confidence 999999999999999999999999999987766432 369999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHH------HHhhhhhhh
Q psy17080 306 EAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSV------YLVYYGLVL 379 (565)
Q Consensus 306 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 379 (565)
||++.+++.++.++.+.. .+...++.++++..+++..+++++++++.+|+...+.+...+.. ...+|...+
T Consensus 220 ~A~~sl~~y~G~~~~~~~---~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i 296 (485)
T KOG0569|consen 220 EARKALKFYRGKEDVEAE---IEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSI 296 (485)
T ss_pred HHHHHHHHHhCCCcchhH---HHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHH
Confidence 999999998765432221 11122222223333346778999999999998766655544432 233444443
Q ss_pred ccC-cCCC-cHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcC--Cc---hHH---HHHHHHH
Q psy17080 380 NLS-NIGG-DVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFA--PG---SFI---TISLAMV 449 (565)
Q Consensus 380 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~--~~---~~~---~~~~~~~ 449 (565)
..+ .+.. .........+++.++.++++.+++||.|||++++.+..++.++.+++.... .+ .|. .++..++
T Consensus 297 ~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~ 376 (485)
T KOG0569|consen 297 FKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFL 376 (485)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 322 2222 234566677888999999999999999999999999988888777665321 11 122 1223333
Q ss_pred HHHHHHHH-HHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHHH-HHhhcc
Q psy17080 450 GKFAISSS-NVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLW--HMQSINIHFPMGLLGVVGVLGGL-SVLLLP 525 (565)
Q Consensus 450 ~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~--~~~~~~~~~~~~~~~~~~~i~~~-~~~~l~ 525 (565)
..++++.+ .|+.+-+.+|++|++.|+.+.++..++..+..++..+.. ..+..|. ..|+++.+.+++..+ ++..+|
T Consensus 377 ~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lP 455 (485)
T KOG0569|consen 377 FIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLP 455 (485)
T ss_pred HHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCc
Confidence 33333333 478899999999999999999999999998888776662 2334444 556666666655544 668999
Q ss_pred cCCCCCccHHHhhhc
Q psy17080 526 DTTGLADNLHQLEND 540 (565)
Q Consensus 526 et~~~~~~~~~~~~~ 540 (565)
|||+ ++.+|..+.
T Consensus 456 ETkg--r~~~eI~~~ 468 (485)
T KOG0569|consen 456 ETKG--RTPYEIIEE 468 (485)
T ss_pred ccCC--CCHHHHHHH
Confidence 9999 566655443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=293.14 Aligned_cols=387 Identities=20% Similarity=0.299 Sum_probs=264.6
Q ss_pred cceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhc------------chh
Q psy17080 141 HTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAIS------------PWF 208 (565)
Q Consensus 141 ~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~------------~~~ 208 (565)
+....++++ +..+.+++.+++.++.+++++++|+++||+|||++++.+.++++++.++++++ +.+
T Consensus 44 ~~~~~~~~~---~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 120 (479)
T PRK10077 44 APQNLSESA---ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYV 120 (479)
T ss_pred ccccccccC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHH
Confidence 344556677 77889999999999999999999999999999999999999999998888763 235
Q ss_pred HHHHHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh-----------cchhHHHHHH
Q psy17080 209 ELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS-----------HNWRLLQWVI 277 (565)
Q Consensus 209 ~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-----------~~Wr~~~~~~ 277 (565)
+.+++.|+++|++.|+..+...+++.|++|+++|++++++.+.+..+|.++++.++..+ .+||+.|++.
T Consensus 121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~ 200 (479)
T PRK10077 121 PEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASE 200 (479)
T ss_pred HHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999887765432 3899999998
Q ss_pred HHHHHHHHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHH
Q psy17080 278 TIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIR 357 (565)
Q Consensus 278 ~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (565)
+++.++..+..+++||+|+|+..+++.+++++..++..+.+. .....++ ..+....+ ... .+..+.-. ..
T Consensus 201 ~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~---~~~---~~~~~~~~-~~ 270 (479)
T PRK10077 201 AIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL--ATQALQE-IKHSLDHG---RKT---GGKLLMFG-VG 270 (479)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh--HHHHHHH-HHHHHHHh---hhh---hhhhcchh-HH
Confidence 888777777778899999999888988888776666532111 0011111 11100000 000 01111110 11
Q ss_pred HHHHHHHHHHHHHH----HhhhhhhhccCcCCC---cHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Q psy17080 358 LISFVQYIIWFSVY----LVYYGLVLNLSNIGG---DVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLAC 430 (565)
Q Consensus 358 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~ 430 (565)
..........+... ...|..+......+. .........++..+++.+++++++||+|||+.++.+.++.+++.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~ 350 (479)
T PRK10077 271 VIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGM 350 (479)
T ss_pred HHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHH
Confidence 11111111111111 111111222222222 23344556677888999999999999999999999888888777
Q ss_pred HHHhhcCC-ch--HHHHHHHHHHHHHHHHH-HHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH-H-------
Q psy17080 431 LMTLGFAP-GS--FITISLAMVGKFAISSS-NVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWH-M------- 498 (565)
Q Consensus 431 ~~~~~~~~-~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~-~------- 498 (565)
+++..... +. .......++.+++.+.. .+..+.+++|.+|++.|+++.|+.+....+|.++++.+.. .
T Consensus 351 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~ 430 (479)
T PRK10077 351 FSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLV 430 (479)
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchh
Confidence 66542211 11 12222233333333322 2567899999999999999999999999999988876622 1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHH-hhcccCCCCCccHHHhhhcCC
Q psy17080 499 QSINIHFPMGLLGVVGVLGGLSV-LLLPDTTGLADNLHQLENDVP 542 (565)
Q Consensus 499 ~~~~~~~~~~~~~~~~~i~~~~~-~~l~et~~~~~~~~~~~~~~~ 542 (565)
+..++...+.++++++++++++. ++.||+|+ ++.||.++..+
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~ 473 (479)
T PRK10077 431 AHFHNGFSYWIYGCMGVLAALFMWKFVPETKG--KTLEEMEALWE 473 (479)
T ss_pred hhccCccHHHHHHHHHHHHHHHHHhccccCCC--CCHHHHHHHHh
Confidence 24556667777777766666554 56789988 56677666543
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=290.93 Aligned_cols=385 Identities=21% Similarity=0.381 Sum_probs=281.4
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhhc
Q psy17080 155 SLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCM 234 (565)
Q Consensus 155 ~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 234 (565)
.+.+++.+++.+|.++++++.|+++|++|||+.++++.+++.++.+++++++|+++++++|+++|+|.|+...+.+.+++
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s 168 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS 168 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence 35589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHhhhhhHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHHHHHH
Q psy17080 235 ELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSH----NWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKI 310 (565)
Q Consensus 235 e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~----~Wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~ 310 (565)
|+.|++.||...+..+....+|.+++..+++... +||..+.+..+++++..+..+++||||+|+.++++.+++++.
T Consensus 169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~ 248 (513)
T KOG0254|consen 169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRS 248 (513)
T ss_pred hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHH
Confidence 9999999999999999999999999977777764 799999999999988888888999999999999999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHH-HH-----HHHhhhhhhhccC-c
Q psy17080 311 LGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIW-FS-----VYLVYYGLVLNLS-N 383 (565)
Q Consensus 311 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~-~ 383 (565)
++++.+.++.+...+..+.. .....+......+..+.++++ |..++..+...... +. ....||...+... .
T Consensus 249 l~~l~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g 326 (513)
T KOG0254|consen 249 LKRLRGLSPEDVEVELELLK-IKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAG 326 (513)
T ss_pred HHHHhCCCCcchHHHHHHHH-HHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcC
Confidence 99998855444333333322 111111111112223555665 44444443333222 22 2223343333221 2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCC---------c--hHHHHHHHHHHHH
Q psy17080 384 IGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAP---------G--SFITISLAMVGKF 452 (565)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~---------~--~~~~~~~~~~~~~ 452 (565)
...+......+.++..+++.+++.++.||+|||+.++.+...+.++++++..... . .+..++..++...
T Consensus 327 ~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 406 (513)
T KOG0254|consen 327 LKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIF 406 (513)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHH
Confidence 2222266677788888999999999999999999999999998888877663211 0 1222222222222
Q ss_pred H-HHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHH--HHhhcccC
Q psy17080 453 A-ISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWH--MQSINIHFPMGLLGVVGVLGGL--SVLLLPDT 527 (565)
Q Consensus 453 ~-~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~--~~~~~~~~~~~~~~~~~~i~~~--~~~~l~et 527 (565)
. .....++.+.+.+|.+|.+.|+.+.++....+.+...+.-.... ....+....|.+++..+.+..+ ..+++|||
T Consensus 407 ~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pET 486 (513)
T KOG0254|consen 407 SFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPET 486 (513)
T ss_pred HHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccC
Confidence 2 22224677789999999999999999999888887766544422 2222224455555555555444 56889999
Q ss_pred CCCCccHHHhhhcCCC
Q psy17080 528 TGLADNLHQLENDVPI 543 (565)
Q Consensus 528 ~~~~~~~~~~~~~~~~ 543 (565)
|+ .++||.++....
T Consensus 487 kg--~sleei~~~~~~ 500 (513)
T KOG0254|consen 487 KG--LTLEEINELFEE 500 (513)
T ss_pred CC--CcHHHHHHHHHc
Confidence 99 778877765443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=282.53 Aligned_cols=361 Identities=17% Similarity=0.183 Sum_probs=237.4
Q ss_pred ccceeeccccccCcch-hh-HH-HHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHH------
Q psy17080 140 GHTIISEWDLVCSNSS-LE-SL-AEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFEL------ 210 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~-~~-~l-~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~------ 210 (565)
.+.+.++|....++.. .. .+ +.++.++++.+|++++|+++||+|||+++..++++++++++++++++|++.
T Consensus 39 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~ 118 (490)
T PRK10642 39 AYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAP 118 (490)
T ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4555666654322211 11 22 257888999999999999999999999999999999999999999999874
Q ss_pred --HHHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHH-----------hcchhHHHHHH
Q psy17080 211 --YLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYY-----------SHNWRLLQWVI 277 (565)
Q Consensus 211 --l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~-----------~~~Wr~~~~~~ 277 (565)
+++.|+++|++.|+.++...+++.|++|+++|+++.++...+..+|.++++.+... ..+||+.|++.
T Consensus 119 ~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~ 198 (490)
T PRK10642 119 ILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIA 198 (490)
T ss_pred HHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHH
Confidence 88999999999999999999999999999999999999998888888877655422 14899999998
Q ss_pred HHHHHHHHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHH
Q psy17080 278 TIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIR 357 (565)
Q Consensus 278 ~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (565)
++++++.+++...+||+|+|...+++.++..+ +...+.++.++++++++ ..+
T Consensus 199 ~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~-~~~ 250 (490)
T PRK10642 199 LPLGIIGLYLRHALEETPAFQQHVDKLEQGDR---------------------------EGLQDGPKVSFKEIATK-HWR 250 (490)
T ss_pred HHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc---------------------------ccccccccCCHHHHHHH-hHH
Confidence 77766666666778999998643322111000 00000112235555543 111
Q ss_pred HHHHHHHHHHH----HHHHh-hhhhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Q psy17080 358 LISFVQYIIWF----SVYLV-YYGLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLA 429 (565)
Q Consensus 358 ~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~ 429 (565)
.... ....++ ..+.. .+...+.....+.+. ........++.+++.++.+++.||+|||+.+..+.++..+.
T Consensus 251 ~~~~-~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~ 329 (490)
T PRK10642 251 SLLT-CIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVL 329 (490)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 111111 11111 122222222333332 22333445667788889999999999999887776544332
Q ss_pred HHH-Hhh-cCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHh-hhh
Q psy17080 430 CLM-TLG-FAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLW--HMQSI-NIH 504 (565)
Q Consensus 430 ~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~--~~~~~-~~~ 504 (565)
.+. +.. ...+.....+..++.+++.+...+....+..|++|++.|+++.|+.+..+.+++.++|++. ..+.. ++.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~ 409 (490)
T PRK10642 330 AIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLM 409 (490)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 222 211 1222233333444555555556667778888999999999999986666677777888872 22332 345
Q ss_pred hHHHHHHHHHHHHHHHHhhcccCCC
Q psy17080 505 FPMGLLGVVGVLGGLSVLLLPDTTG 529 (565)
Q Consensus 505 ~~~~~~~~~~~i~~~~~~~l~et~~ 529 (565)
.++.+..+.++++.+..+++||+++
T Consensus 410 ~~~~~~~~~~~i~~~~~~~~pes~~ 434 (490)
T PRK10642 410 MPAYYLMVVAVIGLITGVTMKETAN 434 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccC
Confidence 5666666677777777778899877
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=267.89 Aligned_cols=345 Identities=12% Similarity=0.041 Sum_probs=241.9
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|.+.+||++ +..+.|++.+++.+++++++++.|+++||+|||++++.+......+.+.....++++.+++.|+++|
T Consensus 14 lp~i~~~~~~---s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G 90 (368)
T TIGR00903 14 LSLVAEDIDV---SKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAA 90 (368)
T ss_pred HHHHHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7889999999 8889999999999999999999999999999999877666555554433334479999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHH-HHhhhcccch
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFL-TLWWIMPESP 295 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~-~~~~~~pesp 295 (565)
++.+. .......+.|++|+++|+++.++...+..+|.++++.++..+ .+||+.|++.++++++.. +.++++||+|
T Consensus 91 ~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 91 LGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred hHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99886 556666679999999999999999999999999998887765 499999999777765544 4466789998
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhh
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYY 375 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (565)
++.. +..+ ..+ ...++++++|+|.++...+..++..........
T Consensus 170 ~~~~---~~~~-------------------~~~--------------~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 213 (368)
T TIGR00903 170 FQAA---EGFG-------------------FKD--------------AVKEFGALAGRKDLWIIGAILGFGVALFDNLAI 213 (368)
T ss_pred CCCC---CCcc-------------------hHH--------------HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Confidence 7521 0000 000 001256788898888777666655554443333
Q ss_pred hhhhccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCh---HHHH-HHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q psy17080 376 GLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRR---RPLC-LTTLGAGLACLMTLGFAPGSFITISLAMVGK 451 (565)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr---~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (565)
..+.++.+.+.+.. ......+..+.+.+..+++.||..|| +... ...++.++.+..+. ...+......+..+.+
T Consensus 214 wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~ 291 (368)
T TIGR00903 214 WLEAALRPAGLEDI-AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALA-FELNRLALFAFIGIAG 291 (368)
T ss_pred HHHHHHHHCCCChH-HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH-HccccHHHHHHHHHHH
Confidence 33333343333322 23333444455556667888887653 3322 23333344333333 3333334444555566
Q ss_pred HHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhccc
Q psy17080 452 FAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWHMQSINIHFPMGLLGVVGVLGGLSVLLLPD 526 (565)
Q Consensus 452 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~e 526 (565)
++....++..+++.+|.+|++.|+++.|+.+..+++|++++|.+...-..+....|.++++..+++++..+.+++
T Consensus 292 ~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~ 366 (368)
T TIGR00903 292 LLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIALLLPN 366 (368)
T ss_pred HhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 667777778889999999999999999999999999999999883221135666788888888877776654454
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=331.72 Aligned_cols=379 Identities=27% Similarity=0.447 Sum_probs=277.5
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHhhhhhhhHhhh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISP---WFELYLVVRFFLGFFCVSIVFSG 229 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~ 229 (565)
++.+.++..+..++|..+|++++|.++||+|||++++++.++..+++++.++++ +++.+.++|++.|++.|+..+..
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 456679999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cc---hhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCC
Q psy17080 230 FVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HN---WRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGR 303 (565)
Q Consensus 230 ~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~---Wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~ 303 (565)
..++.|..|+++|++..++.+.++.+|.+++..++... .+ ||..+++..+++++.++..+++||||||+..|+|
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~ 203 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGR 203 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccc
Confidence 99999999999999999999999999999888776543 24 9999999999998888888899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHH------HHhhhhh
Q psy17080 304 NKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSV------YLVYYGL 377 (565)
Q Consensus 304 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 377 (565)
.+||++.+++.++.+..+ ++..+ ..++.++.++.+.+++++++++..++.++......... ...+|..
T Consensus 204 ~~~A~~~l~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 277 (451)
T PF00083_consen 204 DEEAEKVLRKLRGKEIED--EEIEE----IKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSP 277 (451)
T ss_pred cccccccccccccccccc--ccccc----cccccccccccceeeeecccccccccccccccccccccccccccccccccc
Confidence 999999999855432211 11111 11111111112256788888765433333333222222 1222222
Q ss_pred hhccCcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHh---hcCCc-----hHHHHHHHH
Q psy17080 378 VLNLSNIGGDV-YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTL---GFAPG-----SFITISLAM 448 (565)
Q Consensus 378 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~ 448 (565)
...+..+.+. .....+.++..+++.+++.++.||+|||+.++.+..+++++++.+. ....+ ....+++..
T Consensus 278 -~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 356 (451)
T PF00083_consen 278 -SIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLA 356 (451)
T ss_pred -ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeee
Confidence 2222222222 3445566677788888888999999999999988888777766553 11121 122222222
Q ss_pred HHHHHHH-HHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHHH-HHhhc
Q psy17080 449 VGKFAIS-SSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLW--HMQSINIHFPMGLLGVVGVLGGL-SVLLL 524 (565)
Q Consensus 449 ~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~--~~~~~~~~~~~~~~~~~~~i~~~-~~~~l 524 (565)
+..+..+ ...+..+.+++|++|++.|+++.|+....++++++++|.+. ..+..+....+.+++++++++.+ ..+++
T Consensus 357 l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~l 436 (451)
T PF00083_consen 357 LFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFL 436 (451)
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEE
Confidence 2222223 23466778999999999999999999999999999888872 23333435566666666665554 45889
Q ss_pred ccCCCCCccHHHhhhc
Q psy17080 525 PDTTGLADNLHQLEND 540 (565)
Q Consensus 525 ~et~~~~~~~~~~~~~ 540 (565)
||||+ +++||.++.
T Consensus 437 pET~g--~~l~ei~~~ 450 (451)
T PF00083_consen 437 PETKG--KTLEEIQEM 450 (451)
T ss_pred eeCCC--CCHHHHHhh
Confidence 99999 788888764
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-31 Score=275.19 Aligned_cols=388 Identities=23% Similarity=0.345 Sum_probs=263.9
Q ss_pred ccceeecccccc-----CcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhc---chhHHH
Q psy17080 140 GHTIISEWDLVC-----SNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAIS---PWFELY 211 (565)
Q Consensus 140 ~~~i~~~~~l~c-----~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~---~~~~~l 211 (565)
.+.+..+++..- .+..+.+++.+++.++..++++++|+++||+|||++++.+.++.+++.+++.+. .+++.+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (481)
T TIGR00879 51 LALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEML 130 (481)
T ss_pred hhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 345555555510 136889999999999999999999999999999999999999999999988554 445689
Q ss_pred HHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHH---HHh---cchhHHHHHHHHHHHHHH
Q psy17080 212 LVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIA---YYS---HNWRLLQWVITIPTIFFL 285 (565)
Q Consensus 212 ~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~---~~~---~~Wr~~~~~~~~~~~~~~ 285 (565)
++.|++.|++.+...+....++.|++|+++|+++.++.+.+..+|.++++.++ ... .+||+.|++.++..++.+
T Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~ 210 (481)
T TIGR00879 131 IVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF 210 (481)
T ss_pred HHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988 432 489999999777777777
Q ss_pred HHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHH-HhhhhccccCcccchhhccccH--HHHHHHHH
Q psy17080 286 TLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKE-SVLSTNQDVGKKVQVMDLWRTP--LIRLISFV 362 (565)
Q Consensus 286 ~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~ 362 (565)
+..+++||+|+++..+++.+++++..++..+.+..+ .+..+.... ....+.+.+..+..+.++++.. ..+...+.
T Consensus 211 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (481)
T TIGR00879 211 LGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGED--KELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLG 288 (481)
T ss_pred HHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHH
Confidence 777889999999888888777666555443322211 111110000 0000000001111123333211 12222222
Q ss_pred HHHHHHHHH----HhhhhhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhh
Q psy17080 363 QYIIWFSVY----LVYYGLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLG 435 (565)
Q Consensus 363 ~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~ 435 (565)
..+.++... ...+..+......+.+. ........++.+++.++.+++.||++||+.+..+.++.+++++++..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 368 (481)
T TIGR00879 289 VVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGI 368 (481)
T ss_pred HHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 222222211 11122222233333332 44555667778889999999999999999988887777766655541
Q ss_pred ---c-CCc-----hHHHHHHHHHHHHHHHHH-HHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhh
Q psy17080 436 ---F-APG-----SFITISLAMVGKFAISSS-NVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINI 503 (565)
Q Consensus 436 ---~-~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~ 503 (565)
. ... .+.......+...+.+.. .+....+..|.+|++.|+++.|+.++...+|++++|.+ ...+..++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~ 448 (481)
T TIGR00879 369 LGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGV 448 (481)
T ss_pred HhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 1 111 222222222222233322 35566778999999999999999999999999999988 33455677
Q ss_pred hhHHHHHHHHHHHHHHHH-hhcccCCC
Q psy17080 504 HFPMGLLGVVGVLGGLSV-LLLPDTTG 529 (565)
Q Consensus 504 ~~~~~~~~~~~~i~~~~~-~~l~et~~ 529 (565)
...|++.++++++++++. ++.||+++
T Consensus 449 ~~~f~~~~~~~~~~~i~~~~~~~~~~~ 475 (481)
T TIGR00879 449 GGVFIFFGGLNVLGLIFVYFFLPETKG 475 (481)
T ss_pred cceehhHHHHHHHHHHHHheecccCCC
Confidence 788888888887777665 56788776
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-31 Score=251.46 Aligned_cols=362 Identities=16% Similarity=0.173 Sum_probs=270.4
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|.+.+|.++ +..+.|++.|++.+.|.++-++.|.++||.+.|..+.+++++.++.+++++++++.+.+.+..++.|
T Consensus 52 ~p~l~e~~~l---sk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng 128 (448)
T COG2271 52 MPALIEDGGL---SKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNG 128 (448)
T ss_pred cHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6788888998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHH--HHh---cchhHHHHHHHHHHHHHHHH-hhhccc
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIA--YYS---HNWRLLQWVITIPTIFFLTL-WWIMPE 293 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~--~~~---~~Wr~~~~~~~~~~~~~~~~-~~~~pe 293 (565)
+..|...|.+...+..|+++++||+..++++++.++|..+.+++. ..+ .+||..|++.++.+++..+. ++..+|
T Consensus 129 ~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd 208 (448)
T COG2271 129 WFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRD 208 (448)
T ss_pred HHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999988777 443 38999999998887665554 566777
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHH-Hhhhhcc-ccCcccchhhccccHHHHHHHHHHHHHHHHHH
Q psy17080 294 SPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKE-SVLSTNQ-DVGKKVQVMDLWRTPLIRLISFVQYIIWFSVY 371 (565)
Q Consensus 294 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 371 (565)
+|+-.-. .+.+|-+ + +..+. .++++.+ ....+.-.+-+++||.+|.+.+...+.+..-+
T Consensus 209 ~Pqs~GL-P~ie~~~------------~------d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~ 269 (448)
T COG2271 209 RPQSEGL-PPIEEYR------------G------DPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRY 269 (448)
T ss_pred CccccCC-CCHHHhh------------c------CchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 7751100 0000000 0 00000 0000000 11122335567899999998888888887655
Q ss_pred Hhhh-hhhhccCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhc--CChHHHHHHHHHHHHHHHHHhhcCCch--HHH
Q psy17080 372 LVYY-GLVLNLSNIGGD---VYLNTIISGIVEFPAIVISIFILLKM--GRRRPLCLTTLGAGLACLMTLGFAPGS--FIT 443 (565)
Q Consensus 372 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~--grr~~l~~~~~~~~~~~~~~~~~~~~~--~~~ 443 (565)
.... ...+..+..+.+ ......+.-.+.++|.+++|+++||+ |||....+.+.+....+++.....++. +..
T Consensus 270 gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~ 349 (448)
T COG2271 270 GINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLD 349 (448)
T ss_pred HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHH
Confidence 4433 333333333333 34555666778899999999999996 677666555555544444444356654 555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHH-HHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHH
Q psy17080 444 ISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGV-ALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLS 520 (565)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l-g~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~ 520 (565)
.+++++.|+....-.-+.-..+.|..|++..|++.|+...++++ |...+... ...+..+|...|+++.+.++++.++
T Consensus 350 ~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~ll 429 (448)
T COG2271 350 AILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILL 429 (448)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHH
Confidence 66666667666665567778899999999999999999999999 66666554 3345578888898888888887776
Q ss_pred Hhh
Q psy17080 521 VLL 523 (565)
Q Consensus 521 ~~~ 523 (565)
.+.
T Consensus 430 l~~ 432 (448)
T COG2271 430 LLP 432 (448)
T ss_pred HHH
Confidence 543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-29 Score=260.57 Aligned_cols=328 Identities=19% Similarity=0.180 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhH--------HHHHHHHHHhhhhhhhHhhh
Q psy17080 158 SLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFE--------LYLVVRFFLGFFCVSIVFSG 229 (565)
Q Consensus 158 ~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~ 229 (565)
+.+.+..+++..+|++++|+++||+|||+++..+.++++++++++++++++. .+++.|+++|++.|+.++..
T Consensus 66 ~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~ 145 (432)
T PRK10406 66 AGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTS 145 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhH
Confidence 3344555666669999999999999999999999999999999999998874 58899999999999999999
Q ss_pred hhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHH-----------hcchhHHHHHHHHHHHHHHHHhhhcccchhHH
Q psy17080 230 FVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYY-----------SHNWRLLQWVITIPTIFFLTLWWIMPESPRWL 298 (565)
Q Consensus 230 ~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~-----------~~~Wr~~~~~~~~~~~~~~~~~~~~pesp~~l 298 (565)
.+++.|++|+++|+++.++...+...|.++++.+... ..+||+.|++.++++++.+.....+||+|++.
T Consensus 146 ~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~ 225 (432)
T PRK10406 146 ATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQE 225 (432)
T ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 9999999999999999999888888887776654322 24899999998888877666666678886531
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHH-HHHHH-Hhhhh
Q psy17080 299 VSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYII-WFSVY-LVYYG 376 (565)
Q Consensus 299 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~-~~~~~ 376 (565)
..+ . ++..++++++|++..+...+...+. ....+ ...+.
T Consensus 226 ~~~----------------------------------~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 266 (432)
T PRK10406 226 TRA----------------------------------L-----KEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYM 266 (432)
T ss_pred Hhh----------------------------------h-----cccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0012356677777655444333222 22111 22222
Q ss_pred hhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhh-c--CCchHHHHHHHHHH
Q psy17080 377 LVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLG-F--APGSFITISLAMVG 450 (565)
Q Consensus 377 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~ 450 (565)
..+..+..+.+. .....+..+...++.++.++++||++||+.+.+..++.++....+.. . ..+......+..+.
T Consensus 267 p~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (432)
T PRK10406 267 QKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCA 346 (432)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 222223334332 22333444556677788899999999999877665544333322211 1 11222222222333
Q ss_pred HHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHH-HHHHHHHH-HHHHHhh-hhhHHHHHHHHHHHHHHHHhhc
Q psy17080 451 KFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGV-ALILIPYL-WHMQSIN-IHFPMGLLGVVGVLGGLSVLLL 524 (565)
Q Consensus 451 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l-g~~i~p~i-~~~~~~~-~~~~~~~~~~~~~i~~~~~~~l 524 (565)
.+..+...+....+.+|.+|++.|+++.|+.+..+++ ++...|++ ..++..+ +...+++.++..+++.+..+++
T Consensus 347 ~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 347 LLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 3344444456778899999999999999999877664 34447776 3333334 3444555556666665555544
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-30 Score=249.32 Aligned_cols=341 Identities=19% Similarity=0.215 Sum_probs=274.3
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|.+.+|++. +....|+..|.|.+++.+++++...+.||+.||++++..+.++.++++++++++||+.++++|++.|
T Consensus 36 Lp~iA~dl~v---s~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g 112 (394)
T COG2814 36 LPPIAADLGV---SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAG 112 (394)
T ss_pred hHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7899999999 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHH-hhhcccch
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTL-WWIMPESP 295 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~-~~~~pesp 295 (565)
+..|..++...++..+..|+++|+++.++...+.+++.++|.+++.++ .|||+.|++.+..+++.++. +..+| |
T Consensus 113 ~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~ 190 (394)
T COG2814 113 LAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--P 190 (394)
T ss_pred HHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--C
Confidence 999999999999999999999999999999999999999999888776 48999999998887776655 56677 2
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhh
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYY 375 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (565)
+- .+++.+.+..+..+++|+|..+...+...+.....+..|.
T Consensus 191 ~~--------------------------------------~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ft 232 (394)
T COG2814 191 SE--------------------------------------ISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYT 232 (394)
T ss_pred cc--------------------------------------CCCCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHH
Confidence 10 0001111122356688999999888888777776666555
Q ss_pred hhhhccCc-CCC---cHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q psy17080 376 GLVLNLSN-IGG---DVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGK 451 (565)
Q Consensus 376 ~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (565)
.+...+++ .+. ...+..+.++++.++|..++|++.|| +.|+.+.....+.++..+.+.....+.+...+..++.+
T Consensus 233 Yi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg 311 (394)
T COG2814 233 YIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWG 311 (394)
T ss_pred hHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 44433333 232 34567778899999999999999999 88888888878887777777744455556666666677
Q ss_pred HHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhcc
Q psy17080 452 FAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLLP 525 (565)
Q Consensus 452 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 525 (565)
+.............++..| +.++.+.+++....++|..++..+ ..+++.++....++.+++.+++.++.+...
T Consensus 312 ~a~~~~~~~~~~~~a~~~p-~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 312 FAFSPALQGLQTRLARLAP-DAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred HHhhhhhhHHHHHhcccCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666666677777444 667899999888888888877777 446678888888888888888777665543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-29 Score=261.64 Aligned_cols=335 Identities=19% Similarity=0.186 Sum_probs=229.8
Q ss_pred HHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhH--------HHHHHHHHHhhhhhhhHhhhhhh
Q psy17080 161 EMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFE--------LYLVVRFFLGFFCVSIVFSGFVL 232 (565)
Q Consensus 161 ~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~ 232 (565)
.++.+++..+|+++.|+++||+|||++++.+.++++++++++++++++. .+++.|+++|++.|+.++....+
T Consensus 70 ~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~ 149 (438)
T PRK09952 70 FGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALL 149 (438)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHH
Confidence 3456677889999999999999999999999999999999999999987 58899999999999999999999
Q ss_pred hccccccchhHHHHHHhhhhhHHHHHHHHHHHHH-----------hcchhHHHHHHHHHHHHHHHHhhhcccchhHHHhc
Q psy17080 233 CMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYY-----------SHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSM 301 (565)
Q Consensus 233 i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~-----------~~~Wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~ 301 (565)
+.|++|+++|++..+..+.+..+|.+++..+... ..+||+.|++.+++.++.......+||+|+|...+
T Consensus 150 ~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~ 229 (438)
T PRK09952 150 AVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQ 229 (438)
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Confidence 9999999999999999999999999887665432 24899999998887766555556689998764332
Q ss_pred CCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHH-HHHHHH-Hhhhhhhh
Q psy17080 302 GRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYI-IWFSVY-LVYYGLVL 379 (565)
Q Consensus 302 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 379 (565)
++.++. +++....+.++++++.+...+...+ ..+..+ ...+...+
T Consensus 230 ~~~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 276 (438)
T PRK09952 230 HEQAAA---------------------------------KKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNY 276 (438)
T ss_pred hhcccc---------------------------------cccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111000 0000011124455544443322211 111111 11122222
Q ss_pred ccCcCCCcHH---HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhh-c-CCch-HHHHHHHHHHHHH
Q psy17080 380 NLSNIGGDVY---LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLG-F-APGS-FITISLAMVGKFA 453 (565)
Q Consensus 380 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~ 453 (565)
.....+.+.. ....+.++..+++.++.++++||+|||+.+..+.++..++.+.+.. . ..+. +......++.+++
T Consensus 277 ~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 356 (438)
T PRK09952 277 STQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIA 356 (438)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 2223333332 2233455666778889999999999999888776655544332221 1 1222 2323334455666
Q ss_pred HHHHHHHHHHhcccccchhhhhhHHHHHHHHH-HHHHHHHHHHH--HHHHh--hhhhHHHHHHHHHHHHHHHHhhcccCC
Q psy17080 454 ISSSNVIIPIYTAELFPTKMRNLGVGASSVPA-GVALILIPYLW--HMQSI--NIHFPMGLLGVVGVLGGLSVLLLPDTT 528 (565)
Q Consensus 454 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~-~lg~~i~p~i~--~~~~~--~~~~~~~~~~~~~~i~~~~~~~l~et~ 528 (565)
.+...+..+++..|.+|++.|+++.|+.+..+ .+|+.++|.+. ..+.. ++..++.+.+++++++.+..+.++|++
T Consensus 357 ~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~ 436 (438)
T PRK09952 357 HDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDNQ 436 (438)
T ss_pred HHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHccccc
Confidence 67667788899999999999999999976554 48889999882 23322 356677777777888877777777754
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-30 Score=262.58 Aligned_cols=358 Identities=13% Similarity=0.189 Sum_probs=238.5
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.+.+.+|+++ +..+.|++.+++.+++.+++++.|+++||+|||+++..++++.+++++++++++|++.+++.|++.|
T Consensus 31 ~~~l~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 107 (412)
T TIGR02332 31 GLTMGKDLGL---SATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVG 107 (412)
T ss_pred HHhhHhhcCC---CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5678899999 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---------cchhHHHHHHHHHHHHHHH-Hhh
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---------HNWRLLQWVITIPTIFFLT-LWW 289 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---------~~Wr~~~~~~~~~~~~~~~-~~~ 289 (565)
++.+...+....++.|++|+++|+++.++++.+..+|.++++.++..+ .+||+.|++.+++.++..+ .++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~ 187 (412)
T TIGR02332 108 IAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF 187 (412)
T ss_pred HHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999998887653 3899999998888765544 456
Q ss_pred hcccchh---HHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHH
Q psy17080 290 IMPESPR---WLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYII 366 (565)
Q Consensus 290 ~~pesp~---~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 366 (565)
++||+|+ |+. .++ ++..++..+.+..+.+... ...++.....+..+++++ ++.++...+..++.
T Consensus 188 ~~~~~p~~~~~l~----~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 254 (412)
T TIGR02332 188 WLDDSPDKAKWLD----EED-KKALKEMIDNDQLTLEQPE-------GAFAHAAMPQRSMLREIF-TPAIMLYTLAYFCL 254 (412)
T ss_pred ccCCCcccCCCCC----HHH-HHHHHHHHHhccccccccc-------cccccccccHHHHHHHhc-ChHHHHHHHHHHHH
Confidence 7899984 221 111 1111111110110000000 000000000111234444 45555544444433
Q ss_pred HHHHHHhhhhhhhccCcC--CCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHH-HHHHHHHHHHHHHHHhhcCCch
Q psy17080 367 WFSVYLVYYGLVLNLSNI--GGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRP-LCLTTLGAGLACLMTLGFAPGS 440 (565)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~-l~~~~~~~~~~~~~~~~~~~~~ 440 (565)
...........+.++++. +.+ .........+..+++.++.+++.||++||+. ......+.+++..+.. ...+.
T Consensus 255 ~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~-~~~~~ 333 (412)
T TIGR02332 255 TNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLAS-ATDHN 333 (412)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHH-hcCCH
Confidence 333322222233333332 222 2344556677788999999999999997764 3333333333332222 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHh-hhhhHHHHHHHHH
Q psy17080 441 FITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLW--HMQSI-NIHFPMGLLGVVG 514 (565)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~--~~~~~-~~~~~~~~~~~~~ 514 (565)
.......++..++.....+.......|.+|++.|+++.|+.+..+++|++++|.+. ..+.. ++...+.+.+++.
T Consensus 334 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 334 LIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 22222222223333333344556667889999999999999999999999999882 33444 3565666555543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-29 Score=255.62 Aligned_cols=333 Identities=16% Similarity=0.172 Sum_probs=229.8
Q ss_pred cceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhh
Q psy17080 141 HTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGF 220 (565)
Q Consensus 141 ~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~ 220 (565)
+.+.+|+++ +..+.+++.+++.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|+
T Consensus 42 ~~i~~~~~~---s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 118 (426)
T PRK12307 42 YLIKADLGL---TDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGM 118 (426)
T ss_pred HHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 455667777 77788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhcccchhH
Q psy17080 221 FCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIMPESPRW 297 (565)
Q Consensus 221 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~pesp~~ 297 (565)
+.+...+....++.|++|+++|+++.++...+..+|.++++.+...+ .+||+.|++..++.++.+......||++++
T Consensus 119 g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~ 198 (426)
T PRK12307 119 GMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEW 198 (426)
T ss_pred HHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHH
Confidence 99999999999999999999999999999999999999988776543 489999988655544444333445776554
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHH---HHHhh
Q psy17080 298 LVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFS---VYLVY 374 (565)
Q Consensus 298 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~ 374 (565)
...+.+ ..++. ++...+.....++++++++.++.........+.. ....+
T Consensus 199 ~~~~~~------------~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (426)
T PRK12307 199 EEAKLS------------GKGKH---------------SQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIF 251 (426)
T ss_pred HHhhhh------------ccccc---------------cccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 211100 00000 0000000112456777877766544332222211 11111
Q ss_pred hhhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q psy17080 375 YGLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGK 451 (565)
Q Consensus 375 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (565)
...+.+....+.+. .....+.+++.+++.++.+++.||++||+.+..+.++.++..+.+........... ..++.+
T Consensus 252 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 330 (426)
T PRK12307 252 GLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLL-GACLFG 330 (426)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHH-HHHHHH
Confidence 22222233334332 33345566778899999999999999999888887776665554442222222211 122222
Q ss_pred HH--HHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhh
Q psy17080 452 FA--ISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIH 504 (565)
Q Consensus 452 ~~--~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~ 504 (565)
.+ .....+....++.|.+|++.|+++.|+.+....+|+.++|.+ ...+..++.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~ 387 (426)
T PRK12307 331 LMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLG 387 (426)
T ss_pred HHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHH
Confidence 21 112234556778999999999999999999999999999998 333444433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=259.18 Aligned_cols=347 Identities=13% Similarity=0.097 Sum_probs=252.4
Q ss_pred eEeCCCCcccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHH
Q psy17080 132 WTYDSSSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELY 211 (565)
Q Consensus 132 ~~y~~~~~~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l 211 (565)
..|+.+...|.+.+|+++ +..+.+++.+++.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (377)
T TIGR00890 18 YVYTWTLLAPPLGRYFGV---GVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAAL 94 (377)
T ss_pred HHhhhhhHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345556668999999999 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHH-h--cchhHHHHHHHHHHHHHHHH-
Q psy17080 212 LVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYY-S--HNWRLLQWVITIPTIFFLTL- 287 (565)
Q Consensus 212 ~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~-~--~~Wr~~~~~~~~~~~~~~~~- 287 (565)
++.|++.|++.+...+.....+.|++| ++|+++.++...+..+|.++++.+... . .+||+.|++.++..++..+.
T Consensus 95 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 173 (377)
T TIGR00890 95 YLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLG 173 (377)
T ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888888899986 679999999999999998775544433 2 48999999988877666555
Q ss_pred hhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHH
Q psy17080 288 WWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIW 367 (565)
Q Consensus 288 ~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 367 (565)
+++++|+|+.. .+ ++. +.+++..+.++.++++.++...+......
T Consensus 174 ~~~~~~~~~~~-~~------------------~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (377)
T TIGR00890 174 AFLIGYPPGQL-IK------------------TNI----------------EVSVKDYTVWEMLRTPQFWVLYLSFFLNA 218 (377)
T ss_pred HHheecCchhc-cc------------------cCc----------------ccchhhhhHHHHHcCccHHHHHHHHHHHh
Confidence 44455543200 00 000 00001112445667777665544433322
Q ss_pred HHHHHhhhhhhhccCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCch--HH
Q psy17080 368 FSVYLVYYGLVLNLSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGS--FI 442 (565)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~--~~ 442 (565)
+...........+.++.+.+ ......+.++..+++.++.+++.||++||+.+.++..+.+++.+++. +.+.. ..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 297 (377)
T TIGR00890 219 VSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAML-FIPMLNDVL 297 (377)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-HcccchhHH
Confidence 22111111111122333332 23445566778889999999999999999998888888777776665 33322 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHH
Q psy17080 443 TISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGG 518 (565)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~ 518 (565)
.....++.+++.+...+....+..|.+|++.|+++.|+.+....+|..++|.+ ...+..++...+.+.+++.+++.
T Consensus 298 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 298 FLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 22334455566666666677889999999999999999999999999999988 34566778888888777766653
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=250.06 Aligned_cols=346 Identities=19% Similarity=0.204 Sum_probs=244.6
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|.+.+++++ +..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|
T Consensus 38 ~~~~~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 114 (406)
T PRK11551 38 APRMAQEFGL---DVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTG 114 (406)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4556677787 7788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHH-Hhhhcccch
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLT-LWWIMPESP 295 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~-~~~~~pesp 295 (565)
++.+...+...+++.|++|+++|+++.++...+..+|..+++.++... .+||+.|++.++..++..+ ...++||+|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 115 VGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred hhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999999999999999999999999999998887554 4799999987766544443 455689987
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhcccc---HHHHHHHHHHHHHHHHHHH
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRT---PLIRLISFVQYIIWFSVYL 372 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~ 372 (565)
++...+++.++.++. .+.+++. +..+...+..++.......
T Consensus 195 ~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (406)
T PRK11551 195 AFAQAAGAGKQRAPV------------------------------------LRALFGEGRATATLLLWISYFFTLIVLYF 238 (406)
T ss_pred hHHhccCcchhhhhh------------------------------------HHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 653222111100000 0001111 1111111111111111111
Q ss_pred hhhhhhhccCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q psy17080 373 VYYGLVLNLSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMV 449 (565)
Q Consensus 373 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (565)
.....+.+..+.+.+ ........+++.+++.++.+++.||+|||+.+..+.+..+++++.+. ..++.+...+..++
T Consensus 239 ~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 317 (406)
T PRK11551 239 LLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALA-AAPSFAGMLLAGFA 317 (406)
T ss_pred HHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHH
Confidence 111122222333332 34445566778889999999999999999988877666666655554 44554555555556
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHh-hhhhHHHHHHHHHHHHHHHHhhcc
Q psy17080 450 GKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLW--HMQSI-NIHFPMGLLGVVGVLGGLSVLLLP 525 (565)
Q Consensus 450 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~--~~~~~-~~~~~~~~~~~~~~i~~~~~~~l~ 525 (565)
.+++.+...+...++..|.+|++.|+++.|+.+....+|..++|.+. ..+.. ++...+...+.+.+++.++.+.+.
T Consensus 318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666667788889999999999999999999999999999999983 23332 333344445555555555555443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=252.81 Aligned_cols=344 Identities=15% Similarity=0.161 Sum_probs=231.7
Q ss_pred cceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhh
Q psy17080 141 HTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGF 220 (565)
Q Consensus 141 ~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~ 220 (565)
+.+.+++++ +..+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++++++++++.+++.|++.|+
T Consensus 36 ~~l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~ 112 (405)
T TIGR00891 36 AEVAGEFGL---TTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGI 112 (405)
T ss_pred HHHHHHhCC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 445566777 77888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---c--chhHHHHHHHHHHHHHHHHhhhcccch
Q psy17080 221 FCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---H--NWRLLQWVITIPTIFFLTLWWIMPESP 295 (565)
Q Consensus 221 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~--~Wr~~~~~~~~~~~~~~~~~~~~pesp 295 (565)
+.+...+...+++.|++|+++|+++.++.+.+..+|.++++.++..+ . +||+.|++.+++.++.++....+||++
T Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 113 GMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAE 192 (405)
T ss_pred hhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 99999999999999999999999999999999999999988876653 2 499999987777766666667789987
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccH-H-HHHHHHHHHHHHHHH-HH
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTP-L-IRLISFVQYIIWFSV-YL 372 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~~~~-~~ 372 (565)
++...+++.++.++..++..+.. . ...+.. ++.....++..+.+ . +........+..... ..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (405)
T TIGR00891 193 DWKEKHAGKALVRTMVDILYGGE--H---RIANIV----------MTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPI 257 (405)
T ss_pred hHHHHhhhhhhhhhHHHHHhccc--h---hhhhhh----------hhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 76433322222111111111000 0 000000 00000011111111 0 111111111111111 11
Q ss_pred hhhhhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q psy17080 373 VYYGLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMV 449 (565)
Q Consensus 373 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (565)
..+...+.....+.+. .......+++.+++.++.+++.||+|||+.+..+.++.++..+.......+.+...+..++
T Consensus 258 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (405)
T TIGR00891 258 QDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFF 337 (405)
T ss_pred hhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 1111222222333332 3344566778889999999999999999988877766544433333132333333333344
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhh
Q psy17080 450 GKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSIN 502 (565)
Q Consensus 450 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~ 502 (565)
.++......+....+..|.+|++.|+++.|+.+....+|+.++|.+ ...+..+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 338 QQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred HHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555555567777889999999999999999999999999999998 3344444
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-29 Score=252.16 Aligned_cols=337 Identities=13% Similarity=0.067 Sum_probs=248.2
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|.+.+|+|+ +..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++++++++|++.+++.|+++|
T Consensus 32 ~~~l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G 108 (390)
T PRK03545 32 LSDIAQSFHM---QTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIA 108 (390)
T ss_pred hHHHHhHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5788999999 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHH-hhhcccch
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTL-WWIMPESP 295 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~-~~~~pesp 295 (565)
++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ .+||+.|++.++..++..+. ..++||.|
T Consensus 109 ~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 188 (390)
T PRK03545 109 FAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP 188 (390)
T ss_pred HHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999998999999999999999999999999999999999998887653 48999999988876665444 44456653
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHH-hh
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYL-VY 374 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~ 374 (565)
+. +. + ...+.++++|+|.++......++....... ..
T Consensus 189 ~~-----~~-~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (390)
T PRK03545 189 SE-----HS-G------------------------------------SLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYS 226 (390)
T ss_pred CC-----Cc-c------------------------------------hHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 20 00 0 001234567777766554443332222221 11
Q ss_pred hhhhhccCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q psy17080 375 YGLVLNLSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGK 451 (565)
Q Consensus 375 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (565)
+..++..+..+.+ ........+++.+++.++.+++.||++||... .+..+.+++...+....++.+...+..++.+
T Consensus 227 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g 305 (390)
T PRK03545 227 YIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWG 305 (390)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 2222222223322 33445566778899999999999999988654 4444444444333323344444455555666
Q ss_pred HHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q psy17080 452 FAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLL 523 (565)
Q Consensus 452 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 523 (565)
++.....+.......+..| +.|+++.|+.+....+|..++|.+ ...+..++...+.+.+++.+++.+....
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence 6665555556677778777 578999999999999999999988 4456778888888888888777666543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-29 Score=259.37 Aligned_cols=364 Identities=13% Similarity=0.095 Sum_probs=243.2
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHh-----cchhHHHHHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAI-----SPWFELYLVV 214 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~-----~~~~~~l~~~ 214 (565)
.|.+.+|+++ +..+.|++.+++.+++.+++++.|+++||+|||+++..+.++++++.++.++ +++++.+++.
T Consensus 52 ~~~i~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (467)
T PRK09556 52 QNDMISTYGL---STTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIAL 128 (467)
T ss_pred hHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 5678888999 8889999999999999999999999999999999999988888877776655 6899999999
Q ss_pred HHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh------cchhHHHHHHHHHHHHHHHH-
Q psy17080 215 RFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS------HNWRLLQWVITIPTIFFLTL- 287 (565)
Q Consensus 215 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~------~~Wr~~~~~~~~~~~~~~~~- 287 (565)
|+++|++.+...+....++.||+|+++|++++++...+..+|.++++.++... .+||..|.+.+++.++..+.
T Consensus 129 r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~ 208 (467)
T PRK09556 129 WALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIG 208 (467)
T ss_pred HHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988776432 26999888877776655444
Q ss_pred hhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccc-hhhccccHHHHHHHHHHHHH
Q psy17080 288 WWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQ-VMDLWRTPLIRLISFVQYII 366 (565)
Q Consensus 288 ~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~ 366 (565)
+++++++|+..... +.++ ..+ +. ... +....+.++...... .+..+|+|.++...+..++.
T Consensus 209 ~~~~~~~p~~~~~~-~~~~---~~~------~~-~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 270 (467)
T PRK09556 209 LRYGSDSPEELGWG-KAEE---IFG------EP-ISE-------EDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFL 270 (467)
T ss_pred HHhCCCChhhcCCC-Chhh---ccc------Cc-cch-------hhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 44556666421100 0000 000 00 000 000000000000011 12367888887776665554
Q ss_pred HHHHHH-hhhhhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhh-cCCchH
Q psy17080 367 WFSVYL-VYYGLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLG-FAPGSF 441 (565)
Q Consensus 367 ~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~-~~~~~~ 441 (565)
...... .++...+..+..+.+. ........++.+++.++.|+++||++||+.+.....+..++..++.. ...+.+
T Consensus 271 ~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (467)
T PRK09556 271 YIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEY 350 (467)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 443322 2233333334455443 23344556678899999999999999988766554433333222221 222323
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHH-HHHHHHHH--HHHH------------HhhhhhH
Q psy17080 442 ITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGV-ALILIPYL--WHMQ------------SINIHFP 506 (565)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l-g~~i~p~i--~~~~------------~~~~~~~ 506 (565)
...+..++.++............+.|.+|++.|+++.|+.+..+.+ |++++|.+ ...+ ..+|...
T Consensus 351 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~ 430 (467)
T PRK09556 351 MYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGT 430 (467)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHH
Confidence 3333334444333222233345677999999999999999999997 66888888 3344 3467778
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy17080 507 MGLLGVVGVLGGLSVLLL 524 (565)
Q Consensus 507 ~~~~~~~~~i~~~~~~~l 524 (565)
|.+++++.+++.+..+++
T Consensus 431 f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 431 FAALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888878787776666544
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=249.99 Aligned_cols=345 Identities=10% Similarity=0.001 Sum_probs=245.0
Q ss_pred CCcccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q psy17080 137 SSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRF 216 (565)
Q Consensus 137 ~~~~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~ 216 (565)
....|.+.+|+++ +..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.+++.|+
T Consensus 29 ~~~lp~i~~~~~~---s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~ 105 (393)
T PRK09705 29 GPLLPQLRQASGM---SFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL 105 (393)
T ss_pred chhHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence 3448899999999 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHHHhhhcc
Q psy17080 217 FLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS----HNWRLLQWVITIPTIFFLTLWWIMP 292 (565)
Q Consensus 217 l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~~Wr~~~~~~~~~~~~~~~~~~~~p 292 (565)
++|++.+...+....++.+++| ++|+++++++..+..+|..+++.++..+ .+||+.+.+.++..++.++.++...
T Consensus 106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 184 (393)
T PRK09705 106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQS 184 (393)
T ss_pred HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999986 7899999999888777777777666543 4899988776665544433332221
Q ss_pred c-chhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHH
Q psy17080 293 E-SPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVY 371 (565)
Q Consensus 293 e-sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 371 (565)
+ .|+ + +++ ++...++.++++..+...+...+......
T Consensus 185 ~~~~~---------~-----------------------------~~~----~~~~~~~~l~~~~~~~l~~~~~~~~~~~~ 222 (393)
T PRK09705 185 AREVA---------S-----------------------------SHK----TTTTPVRVVFTPRAWTLGVYFGLINGGYA 222 (393)
T ss_pred cCCCc---------c-----------------------------ccC----CCcCCcccccCHhHHHHHHHHHHHHHHHH
Confidence 1 110 0 000 00112345566666555444433333222
Q ss_pred HhhhhhhhccCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHH
Q psy17080 372 LVYYGLVLNLSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAM 448 (565)
Q Consensus 372 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (565)
......+.+..+.+.+ ......+.+++.+++.++.+++.||++||+.+..+..+.+++.+.+....++... ...+
T Consensus 223 ~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~ 300 (393)
T PRK09705 223 SLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPV--LWAM 300 (393)
T ss_pred HHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHH--HHHH
Confidence 2222222222233433 2345566778889999999999999999998888877777666655423222222 2233
Q ss_pred HHHHHHHHHHHHHHHhccccc-chhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhh-hhhHHHHHHHHHHHHHHH-Hhh
Q psy17080 449 VGKFAISSSNVIIPIYTAELF-PTKMRNLGVGASSVPAGVALILIPYL--WHMQSIN-IHFPMGLLGVVGVLGGLS-VLL 523 (565)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~-~~~~~~~~~~~~~i~~~~-~~~ 523 (565)
+.+++.+..++.......+.. |++.+++..|+.+..+.+++.++|.+ ...+..+ +...+.+.++++++..++ ..+
T Consensus 301 l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK09705 301 VCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRF 380 (393)
T ss_pred HHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence 456666666676666666666 46789999999999999999999988 3345443 566676666666655554 466
Q ss_pred cccCCC
Q psy17080 524 LPDTTG 529 (565)
Q Consensus 524 l~et~~ 529 (565)
.|||++
T Consensus 381 ~~~~~~ 386 (393)
T PRK09705 381 APARFP 386 (393)
T ss_pred cccccc
Confidence 788776
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=252.61 Aligned_cols=372 Identities=21% Similarity=0.254 Sum_probs=269.3
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcc-------hhHHHHHHHHHHhhhhhhhH
Q psy17080 154 SSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISP-------WFELYLVVRFFLGFFCVSIV 226 (565)
Q Consensus 154 ~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~ 226 (565)
+...+.+..+-.+|.++|++++|+++||+|||+++...++++.+++++++++. -.+++...|++.|+|.|+-+
T Consensus 83 s~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDY 162 (538)
T KOG0252|consen 83 SGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDY 162 (538)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCC
Confidence 34457889999999999999999999999999999999999999999888763 24678899999999999999
Q ss_pred hhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhc------------------chhHHHHHHHHHHHHHHHHh
Q psy17080 227 FSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSH------------------NWRLLQWVITIPTIFFLTLW 288 (565)
Q Consensus 227 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~------------------~Wr~~~~~~~~~~~~~~~~~ 288 (565)
|...+..+|....++||...+...+...+|.+.+..++..+. -||..+.+..++++..+...
T Consensus 163 PlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~R 242 (538)
T KOG0252|consen 163 PLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFR 242 (538)
T ss_pred cchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999988888888887776655431 39999999999999999999
Q ss_pred hhcccchhHHHhcC-CHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCccc---chhhccccHHHHHHHHHHH
Q psy17080 289 WIMPESPRWLVSMG-RNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKV---QVMDLWRTPLIRLISFVQY 364 (565)
Q Consensus 289 ~~~pesp~~l~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~ 364 (565)
+.+|||+|+-.... +.+.|. +..++..+.++++ +...+...+.++. .+...|..+ --+.++...
T Consensus 243 l~M~Et~~Y~al~~~~~~~a~-------~d~~k~~~~~~~~----~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~ 310 (538)
T KOG0252|consen 243 LKMPETARYTALVSKKLKQAA-------GDMKKVLSVDIEA----ESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTA 310 (538)
T ss_pred hcCCcchhHHHHhhcCHhhhh-------hccccccccccch----hhccccCCCCcccccchHHHHHHHH-HHHHHHHHH
Confidence 99999999863322 222222 1112222221111 1111111111111 233344333 336677788
Q ss_pred HHHHHHHHhhhhhhhccCcC----C----CcHH--------HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q psy17080 365 IIWFSVYLVYYGLVLNLSNI----G----GDVY--------LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGL 428 (565)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~----~----~~~~--------~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~ 428 (565)
..|+...+.+|...++.+.. + .+.+ .+..+.....++|..+..+++|++|||+..+.+++++.+
T Consensus 311 ~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i 390 (538)
T KOG0252|consen 311 GTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTI 390 (538)
T ss_pred HHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHH
Confidence 89998888888766654432 1 1111 222333344556777777899999999999999999999
Q ss_pred HHHHHhhcCCc-h---HHHHHHHHHHHHHHHHH-HHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH--HH--
Q psy17080 429 ACLMTLGFAPG-S---FITISLAMVGKFAISSS-NVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWH--MQ-- 499 (565)
Q Consensus 429 ~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~--~~-- 499 (565)
..+.+. ...+ . ....++..+..++...+ ......+.+|.+|++.|+++.|+....+.+|++++.+... .+
T Consensus 391 ~~~~~~-~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~ 469 (538)
T KOG0252|consen 391 FFFVIA-GPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN 469 (538)
T ss_pred HHHHHc-CCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc
Confidence 998888 4333 2 22233333333332222 3456678899999999999999999999999999988733 33
Q ss_pred ---HhhhhhHHHHHHHHHHHHHHHHhhcccCCCCCccHHHhhhc
Q psy17080 500 ---SINIHFPMGLLGVVGVLGGLSVLLLPDTTGLADNLHQLEND 540 (565)
Q Consensus 500 ---~~~~~~~~~~~~~~~~i~~~~~~~l~et~~~~~~~~~~~~~ 540 (565)
..+....+++++.+.+++.+..+++|||++ +++||.++.
T Consensus 470 yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~--~~leei~~e 511 (538)
T KOG0252|consen 470 YPPNIGVRNVFIILAGCMLLGILFTLLIPETKG--KSLEEISNE 511 (538)
T ss_pred CCccccchHHHHHHHHHHHHhHheeEEeecccc--cCHHHhcCh
Confidence 356778899999999999999999999999 677776543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-27 Score=244.69 Aligned_cols=361 Identities=15% Similarity=0.112 Sum_probs=238.1
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|.+.+++++ +..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.++++++++++.+++.|++.|
T Consensus 46 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 122 (434)
T PRK11663 46 MPEMLADLGL---SRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNA 122 (434)
T ss_pred hHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4556667787 7788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHH-HHhhhcccch
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFL-TLWWIMPESP 295 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~-~~~~~~pesp 295 (565)
++.|...+...+++.|++++++|++++++.+.+..+|.++++.+...+ .+||+.|++.+++.++.. +..+++||+|
T Consensus 123 ~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p 202 (434)
T PRK11663 123 FFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKP 202 (434)
T ss_pred HHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 999999999999999999999999999999999999999988776654 489999999887765443 4455678887
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccch-hhccccHHHHHHHHHHHHHHHHHHHh-
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQV-MDLWRTPLIRLISFVQYIIWFSVYLV- 373 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~- 373 (565)
++...+...++.++.. +...+.+....+.+..+ ...++++.++...+...+........
T Consensus 203 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (434)
T PRK11663 203 QAMGLPSVGEWRHDAL-------------------ELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAIN 263 (434)
T ss_pred hhcCCCCccccccccc-------------------ccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 6421110000000000 00000000000000001 12456777666555444333332222
Q ss_pred hhhhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhc--CChHHH-HHHHHHHHHHHHHHhhc-CCchHHHHHH
Q psy17080 374 YYGLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKM--GRRRPL-CLTTLGAGLACLMTLGF-APGSFITISL 446 (565)
Q Consensus 374 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~--grr~~l-~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 446 (565)
.+...+.....+.+. ........++.+++.++.+++.||+ ++|+.. ....+...+....+... ..+.......
T Consensus 264 ~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (434)
T PRK11663 264 DWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAAC 343 (434)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence 222223223344433 3344556677889999999999998 333322 22221111111111111 1222222222
Q ss_pred HHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHh
Q psy17080 447 AMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVL 522 (565)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~ 522 (565)
.+..+++.............|.+|++.|+++.|+.++...+|++++|.+ ...+..++...|.+.+++++++++..+
T Consensus 344 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 344 FFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 2222222222223345667899999999999999999999999999988 445667788888888888877766554
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=250.01 Aligned_cols=362 Identities=16% Similarity=0.180 Sum_probs=251.5
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|.+.+++++ +..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|
T Consensus 17 ~~~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 93 (399)
T TIGR00893 17 APMLQEDLGL---SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLG 93 (399)
T ss_pred HHHHHHhhCC---ChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 5778889999 8889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHH-hhhcccch
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTL-WWIMPESP 295 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~-~~~~pesp 295 (565)
++.+...+....++.|++|+++|++..++...+..+|.++++.++..+ .+||+.|++.++..++..+. .++.||+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 94 AAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCC
Confidence 999999999999999999999999999999999999999998887753 48999999988776665544 44566665
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhh
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYY 375 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (565)
+.. +...++.++...+. ...+.+++++++..+...++++++|.++...+..++..........
T Consensus 174 ~~~--~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (399)
T TIGR00893 174 QKA--KWLTEEEKYIVVGG---------------LLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLT 236 (399)
T ss_pred Ccc--ccCCHHHHhhcchh---------------hccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHH
Confidence 311 00011110000000 0000001111222344567888888877776665555544433333
Q ss_pred hhhhcc-CcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChH--HHHHHH--HHHHH-HHHHHhhc--CCchHHHH
Q psy17080 376 GLVLNL-SNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRR--PLCLTT--LGAGL-ACLMTLGF--APGSFITI 444 (565)
Q Consensus 376 ~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~--~l~~~~--~~~~~-~~~~~~~~--~~~~~~~~ 444 (565)
..+.+. +..+.+ .........+..+++.++.+++.||++||+ ...... ....+ ..+..... .+..+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (399)
T TIGR00893 237 WFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAAL 316 (399)
T ss_pred HHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 333222 223333 234455566778889999999999999985 111111 11111 11111101 11223333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHhh-hhhHHHHHHHHHHHHHHHH
Q psy17080 445 SLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLW--HMQSIN-IHFPMGLLGVVGVLGGLSV 521 (565)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~--~~~~~~-~~~~~~~~~~~~~i~~~~~ 521 (565)
....+..++.+ ..+...++..|.+|++.|+++.|+.+....+|..++|.+. ..+..+ +...+.+.+++.+++.+..
T Consensus 317 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 317 ALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 33333344443 5788889999999999999999999999999999999883 344455 6777777777777766654
Q ss_pred h
Q psy17080 522 L 522 (565)
Q Consensus 522 ~ 522 (565)
+
T Consensus 396 ~ 396 (399)
T TIGR00893 396 L 396 (399)
T ss_pred H
Confidence 3
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-28 Score=251.93 Aligned_cols=351 Identities=15% Similarity=0.071 Sum_probs=233.4
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.+.+.+|+++ +..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|
T Consensus 59 ~~~l~~~~gl---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G 135 (476)
T PLN00028 59 LPIIRDNLNL---TKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIG 135 (476)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4566778888 7788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHH----HHHHHHh--------cchhHHHHHHHHHHHHHHHH
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAI----SGIAYYS--------HNWRLLQWVITIPTIFFLTL 287 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~----~~l~~~~--------~~Wr~~~~~~~~~~~~~~~~ 287 (565)
++.+... ....++.|++|+++|+++.++......+|..++ +.+...+ .+||+.|++.+++.++..+.
T Consensus 136 ~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~ 214 (476)
T PLN00028 136 FSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGIL 214 (476)
T ss_pred HHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 9987643 456678999999999999999876555555544 3333221 37999999988887766655
Q ss_pred hhhccc-chhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHH
Q psy17080 288 WWIMPE-SPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYII 366 (565)
Q Consensus 288 ~~~~pe-sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 366 (565)
.+++++ .|+ ++.++.+ + + .+.++......+++.++++..+...+..+..
T Consensus 215 ~~~~~~~~p~-----~~~~~~~-------~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (476)
T PLN00028 215 VLTLGQDLPD-----GNYRELK-------K-S-----------------GTMPKDSFSKVLRYGVTNYRTWILALTYGYS 264 (476)
T ss_pred HHHHcCcCCC-----CchhhHH-------h-c-----------------CccccccHHHHHHHHHcCchhHHHHHHHHHH
Confidence 555543 332 1100000 0 0 0000000112345566777766554443332
Q ss_pred HHHHHHhh-hhhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCCh-------HHHHHHHHHHHHHHHHHhh
Q psy17080 367 WFSVYLVY-YGLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRR-------RPLCLTTLGAGLACLMTLG 435 (565)
Q Consensus 367 ~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr-------~~l~~~~~~~~~~~~~~~~ 435 (565)
+....... +...+..+..+.+. .....+.+++.+++.+++|+++||++|| ....+..++.++.++++.
T Consensus 265 ~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~- 343 (476)
T PLN00028 265 FGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLG- 343 (476)
T ss_pred HHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhc-
Confidence 22221111 12222223334332 3445556678889999999999999865 222233333333333333
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHH
Q psy17080 436 FAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWHMQ-SINIHFPMGLLGVVG 514 (565)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~-~~~~~~~~~~~~~~~ 514 (565)
...+.+...+.+++.+++.+...+..+.+..++.| +.++++.|+.+..+.+|++++|.+.... ..++...|.+.+++.
T Consensus 344 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~ 422 (476)
T PLN00028 344 RANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMI 422 (476)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHH
Confidence 33333333444455556655566667777777755 6899999999999999999999875432 235778888888888
Q ss_pred HHHHHHHhhccc
Q psy17080 515 VLGGLSVLLLPD 526 (565)
Q Consensus 515 ~i~~~~~~~l~e 526 (565)
++++++.++++.
T Consensus 423 ~i~~~~~~~~~~ 434 (476)
T PLN00028 423 IACTLPVAFIHF 434 (476)
T ss_pred HHHHHHHHheec
Confidence 888887766653
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-27 Score=243.73 Aligned_cols=353 Identities=13% Similarity=0.091 Sum_probs=228.7
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHHhhhhhhhHhh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAIS----PWFELYLVVRFFLGFFCVSIVFS 228 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~ 228 (565)
+..+.+++.+++.+++.+++++.|+++||+|||++++.+.++.+++.++++++ .+++.+++.|++.|++.+...+.
T Consensus 61 s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~ 140 (452)
T PRK11273 61 SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPP 140 (452)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchH
Confidence 66788999999999999999999999999999999999999999999988875 37888999999999999988888
Q ss_pred hhhhhccccccchhHHHHHHhhhhhHHHHHH-HHHHHH---HhcchhHHHHHHHHHHHHH-HHHhhhcccchhHHHhcCC
Q psy17080 229 GFVLCMELVGGKWLTIMGVMYLFPVPVGYIA-ISGIAY---YSHNWRLLQWVITIPTIFF-LTLWWIMPESPRWLVSMGR 303 (565)
Q Consensus 229 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~-~~~l~~---~~~~Wr~~~~~~~~~~~~~-~~~~~~~pesp~~l~~~~~ 303 (565)
....+.|++|+++|+++.++.+.+..+|..+ ++.++. ...+||+.|++.+++.++. ++..+++||+|+....+.
T Consensus 141 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~- 219 (452)
T PRK11273 141 CGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPP- 219 (452)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCC-
Confidence 8888999999999999999999998888644 444322 2349999999987776554 445667788876421111
Q ss_pred HHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccc-hhhccccHHHHHHHHHHHHHHHHHHHhhhhhhhcc-
Q psy17080 304 NKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQ-VMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNL- 381 (565)
Q Consensus 304 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 381 (565)
.++.++ + . +.+ ...++.++.+.+.. ...++|++.++...+...+............+.+.
T Consensus 220 ~~~~~~---~----~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~ 281 (452)
T PRK11273 220 IEEYKN---D----Y----PDD-------YNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLK 281 (452)
T ss_pred hhhhhh---c----c----ccc-------cccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111000 0 0 000 00000000000111 12367788887776666555544333322233333
Q ss_pred CcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhc--CChHHH-HHHHHHHHHHHHHHhhcCC-chHHHHHHHHHHHHHH
Q psy17080 382 SNIGGD---VYLNTIISGIVEFPAIVISIFILLKM--GRRRPL-CLTTLGAGLACLMTLGFAP-GSFITISLAMVGKFAI 454 (565)
Q Consensus 382 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~--grr~~l-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 454 (565)
+..+.+ ......+..+..+++.++.|+++||+ +||... .....+..++.+.+..... +.+...+..+..+...
T Consensus 282 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 361 (452)
T PRK11273 282 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLI 361 (452)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH
Confidence 223333 23334456677788999999999998 555432 2222222333322221112 2222222333333333
Q ss_pred HHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHH-HHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhc
Q psy17080 455 SSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALIL-IPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLL 524 (565)
Q Consensus 455 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i-~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 524 (565)
.........++.|.+|++.|+++.|+.+....+|+.+ +|.+ ...+..++...|.+.+++++++++....+
T Consensus 362 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 434 (452)
T PRK11273 362 YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 434 (452)
T ss_pred HhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 2222334456789999999999999999988888655 6876 44566788888888888888777665433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=243.00 Aligned_cols=338 Identities=16% Similarity=0.094 Sum_probs=237.2
Q ss_pred eeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhc--------chhHHHHHH
Q psy17080 143 IISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAIS--------PWFELYLVV 214 (565)
Q Consensus 143 i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~--------~~~~~l~~~ 214 (565)
+.+++++ +..+.|++.+++.+++.+++++.|+++||+|||++++.+.++.+++.+.+.++ .+++++++.
T Consensus 42 i~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (399)
T PRK05122 42 VHDQLGF---SAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLG 118 (399)
T ss_pred HHHhcCc---cHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHH
Confidence 5677888 88899999999999999999999999999999999999999888877766543 256789999
Q ss_pred HHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhc
Q psy17080 215 RFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIM 291 (565)
Q Consensus 215 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~ 291 (565)
|+++|++.+...+....++.|++++++|+++.++...+..+|.++++.++..+ .+||+.+++..+..++..+.....
T Consensus 119 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 198 (399)
T PRK05122 119 RLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARPR 198 (399)
T ss_pred HHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999998888888888877654 489998887666554443333323
Q ss_pred ccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHH
Q psy17080 292 PESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVY 371 (565)
Q Consensus 292 pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 371 (565)
|++++ .+++ +.+.++.+++ .+.......+..+...
T Consensus 199 ~~~~~---~~~~----------------------------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~ 233 (399)
T PRK05122 199 PAVPP---VKGE----------------------------------------RLPFRRVLGR--VWPYGMGLALASIGFG 233 (399)
T ss_pred CCCCC---CCcc----------------------------------------chhHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 33211 0000 0001111111 1111111111111111
Q ss_pred HhhhhhhhccCcCC-CcHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q psy17080 372 LVYYGLVLNLSNIG-GDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVG 450 (565)
Q Consensus 372 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (565)
........+..+.+ .+........+++.+++.++.+++.||+++|+.+..+..+.+++.+++. ..++.+...+..++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ 312 (399)
T PRK05122 234 TIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLW-LAPSPWMALIGAALT 312 (399)
T ss_pred HHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHH
Confidence 11000111111112 1223334456677788899999999999999988888877777766665 445555555556677
Q ss_pred HHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhcccCC
Q psy17080 451 KFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLLPDTT 528 (565)
Q Consensus 451 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~et~ 528 (565)
+++.+..++.......|..|++.|+++.|+.+....+|..++|.+ ...+..++...+.+.+++.+++.++..++++++
T Consensus 313 G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (399)
T PRK05122 313 GFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRA 392 (399)
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777777778889999999999999999999998887776 344566788888888888888777766665543
Q ss_pred C
Q psy17080 529 G 529 (565)
Q Consensus 529 ~ 529 (565)
+
T Consensus 393 ~ 393 (399)
T PRK05122 393 P 393 (399)
T ss_pred c
Confidence 3
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=246.07 Aligned_cols=358 Identities=14% Similarity=0.024 Sum_probs=254.7
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHh-----cchhHHHHHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAI-----SPWFELYLVV 214 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~-----~~~~~~l~~~ 214 (565)
.|.+.++++. +..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+..+. .++++.+++.
T Consensus 40 ~~~~~~~~~~---s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 116 (417)
T PRK10489 40 VPVQIQMMTG---STLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLL 116 (417)
T ss_pred HHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 4556667776 7788999999999999999999999999999999999988887777665442 5678999999
Q ss_pred HHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhc
Q psy17080 215 RFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIM 291 (565)
Q Consensus 215 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~ 291 (565)
|++.|++.+...+...+++.|++|+++|+++.++...+..+|..+++.++..+ .+|++.+++.++..++..+..+.+
T Consensus 117 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (417)
T PRK10489 117 GLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL 196 (417)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC
Confidence 99999998888888899999999999999999999999999999998887654 479999988877777666666777
Q ss_pred ccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHH
Q psy17080 292 PESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVY 371 (565)
Q Consensus 292 pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 371 (565)
||+++.. +.+. .... +....++.++++|.++...+...+......
T Consensus 197 ~~~~~~~--~~~~-------------------~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T PRK10489 197 PALPPPP--QPRE-------------------HPLR--------------SLLAGFRFLLASPVVGGIALLGGLLTMASA 241 (417)
T ss_pred CCCCCCC--cccc-------------------cchH--------------HHHHHHHHHHcChHHHHHHHHHHHHHHHHh
Confidence 7764310 0000 0000 001123446677776655544333222222
Q ss_pred HhhhhhhhccCc-CCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHH
Q psy17080 372 LVYYGLVLNLSN-IGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLA 447 (565)
Q Consensus 372 ~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (565)
...+ .+.+..+ .+.+. .......+++.+++.++.+++.||.++++.+..+.++.+++.+++. +.++.+...+..
T Consensus 242 ~~~~-~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 319 (417)
T PRK10489 242 VRVL-YPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFG-LMPMWILAVLCL 319 (417)
T ss_pred HHHh-hHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHH-ccchHHHHHHHH
Confidence 1112 2222232 34332 3344556677888899999999998777777777777766666555 445444445555
Q ss_pred HHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHH-HHHHHhhc
Q psy17080 448 MVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVL-GGLSVLLL 524 (565)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i-~~~~~~~l 524 (565)
++.+++.+...+...++..|..|++.|+++.|+.+....+|..++|.+ ...+..+....+.+.+++.++ +.+....+
T Consensus 320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 399 (417)
T PRK10489 320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVL 399 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhc
Confidence 666677666667777889999999999999999999999999999998 344556766677766665555 44455777
Q ss_pred ccCCCCCccHHHhhh
Q psy17080 525 PDTTGLADNLHQLEN 539 (565)
Q Consensus 525 ~et~~~~~~~~~~~~ 539 (565)
|++|+ .+.||.|+
T Consensus 400 ~~~~~--~~~~~~~~ 412 (417)
T PRK10489 400 GELRR--FRQTPPEV 412 (417)
T ss_pred ccccc--cccccccC
Confidence 88887 34444433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=237.61 Aligned_cols=342 Identities=20% Similarity=0.272 Sum_probs=237.4
Q ss_pred cceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhh
Q psy17080 141 HTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGF 220 (565)
Q Consensus 141 ~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~ 220 (565)
|.+.+++++ +..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++..++++++.+++.|++.|+
T Consensus 41 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 117 (398)
T TIGR00895 41 PAISAEWGL---DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGL 117 (398)
T ss_pred HHHhhccCC---CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 334455666 67778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHH-HHHHHHHhhhcccchh
Q psy17080 221 FCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIP-TIFFLTLWWIMPESPR 296 (565)
Q Consensus 221 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~-~~~~~~~~~~~pesp~ 296 (565)
+.+...+...+++.|++|+++|+++.++...+..+|..+++.++..+ .+||+.+++.++. .+..++..+++||+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (398)
T TIGR00895 118 GLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESID 197 (398)
T ss_pred ccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCCh
Confidence 99999999999999999999999999999999999999998887654 4899999887644 4444455677899988
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhcccc-CcccchhhccccHHHHHHHH---HHHHHHHHHHH
Q psy17080 297 WLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDV-GKKVQVMDLWRTPLIRLISF---VQYIIWFSVYL 372 (565)
Q Consensus 297 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~ 372 (565)
+...+ +.+++++..++.......+...+. .++..+. ..+...+.+++.+..+.... ...+.......
T Consensus 198 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (398)
T TIGR00895 198 FLVSK-RPETVRRIVNAIAPQMQAEAQSAL--------PEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYF 268 (398)
T ss_pred HHHhc-CHHHHHHHHHHHHHhccccccccc--------cccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 76555 444444444443322211110000 0000000 01111222333332222211 11111111111
Q ss_pred hhhhhhhccCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q psy17080 373 VYYGLVLNLSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMV 449 (565)
Q Consensus 373 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (565)
.....++.....+.+ .........++.+++.++.+++.||++||+.. ....+.++...++.....+.+......++
T Consensus 269 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (398)
T TIGR00895 269 LTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTA-LLLLLGAVFAVLVGSTLFSPTLLLLLGAI 347 (398)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH-HHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 111122333333333 23445566778889999999999999999444 34444444443333223444555666777
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 450 GKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 450 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
.+++.+...+...++..|.+|++.|+++.|+.+.+..+|..++|.+
T Consensus 348 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~ 393 (398)
T TIGR00895 348 AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPIL 393 (398)
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888889999999999999999999999999999999999987
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=234.98 Aligned_cols=333 Identities=15% Similarity=0.147 Sum_probs=239.3
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|.+.+++++ +..+.++..+++.++..+++++.|+++||+|||++++.+.++.+++.++++++++++.+++.|+++|
T Consensus 43 l~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 119 (394)
T PRK10213 43 LTPMAQDLGI---SEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLG 119 (394)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 5678889999 8889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHH-hhhcccch
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTL-WWIMPESP 295 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~-~~~~pesp 295 (565)
++.+...+...+++.|++|+++|+++.++...+.++|.++++.++..+ .+||+.|++.++.+++..+. ...+||+|
T Consensus 120 ~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 120 LALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 999999999999999999999999999999999999999999888765 48999999987766554433 33466653
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHh-h
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLV-Y 374 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~ 374 (565)
+. + + +.....++.+|+|.++...+..++........ .
T Consensus 200 ~~-----~-~------------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 237 (394)
T PRK10213 200 GE-----P-S------------------------------------HQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFT 237 (394)
T ss_pred cc-----c-c------------------------------------cchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 20 0 0 00012345677887776555433333322211 1
Q ss_pred hhhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q psy17080 375 YGLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGK 451 (565)
Q Consensus 375 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (565)
+..+.+.+..+.+. .......+++.+++.++.+++.||.+++.......+..+..+++.. ..++.+......++.+
T Consensus 238 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~l~G 316 (394)
T PRK10213 238 YIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTL-WGSDKIVATGVAIIWG 316 (394)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence 22233344444333 3445556677888899999999996544333333332333333333 3344455555666777
Q ss_pred HHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHH
Q psy17080 452 FAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGL 519 (565)
Q Consensus 452 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~ 519 (565)
++.+...+...+++.+..|+ .++...+.......+|..++|.+ ...+..++...+...+++.++..+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 317 LTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred HHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Confidence 78877777777788888874 45666677777778888888888 344556666666666655544443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=234.53 Aligned_cols=339 Identities=15% Similarity=0.167 Sum_probs=237.8
Q ss_pred eeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHH-HHHHHHHHHHHHHhcchhHHHHHHHHHHhhh
Q psy17080 143 IISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMG-SLVFQLVLGVLVAISPWFELYLVVRFFLGFF 221 (565)
Q Consensus 143 i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~-~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~ 221 (565)
+.+++++ +..+.|++.+++.++..+.+++.|.++||+||||.++. +.++..++.++++++++++.+++.|++.|.+
T Consensus 24 l~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 100 (375)
T TIGR00899 24 LSEEVRA---RPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSF 100 (375)
T ss_pred HHcccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhh
Confidence 5678898 88899999999999999999999999999999887654 5666677788889999999999999999988
Q ss_pred hhhhHhhhhhhhccccccchhHHH--HHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHH-hhhcccch
Q psy17080 222 CVSIVFSGFVLCMELVGGKWLTIM--GVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTL-WWIMPESP 295 (565)
Q Consensus 222 ~~~~~~~~~~~i~e~~~~~~r~~~--~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~-~~~~pesp 295 (565)
.+...+...+++.|+.++++|++. .+....+.++|.++++.++..+ .+||+.|++.++..++..+. ++++||+|
T Consensus 101 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 101 ASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred hhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 888888888888999887777644 5667777788888888776654 38999999988876665554 45588876
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhh
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYY 375 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (565)
++...+ + ...+.++.++++.++......++.+........
T Consensus 181 ~~~~~~----~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (375)
T TIGR00899 181 RGAPGA----L------------------------------------TRLEVRGLLASRDTRLLFVACTLMWGCNILYII 220 (375)
T ss_pred cCcccc----c------------------------------------CcchhhhhhcCcchHHHHHHHHHHHHHHHHHHh
Confidence 421000 0 000122345566655554444444443222222
Q ss_pred hhhhc-cCcCCCcHH---HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q psy17080 376 GLVLN-LSNIGGDVY---LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGK 451 (565)
Q Consensus 376 ~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (565)
..+.+ .+..+.+.. .......+..+++.++.+++.||+|||+.+..+.++..+....+. ..++.+......++.+
T Consensus 221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g 299 (375)
T TIGR00899 221 NMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLA-ADNSLWALLMLQLLNA 299 (375)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 22222 223333332 222233445667788999999999999988877665555444433 3333444444555667
Q ss_pred HHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhccc
Q psy17080 452 FAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLLPD 526 (565)
Q Consensus 452 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~e 526 (565)
++.+...+....+..|..|++ ++++.|+.+....+|..++|.+ ...+..++...+.+.+++.+++.++.++++|
T Consensus 300 ~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 300 IFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 777777778888889998865 5699999999999999999988 3345667888888888888887777666543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-26 Score=241.02 Aligned_cols=370 Identities=15% Similarity=0.166 Sum_probs=230.9
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.+.+.+++|+ +..+.+++.+.+.+++.+++++.|+++||+|||++++.+.++.+++.++.+++++++.+++.|++.|
T Consensus 43 ~~~i~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 119 (496)
T PRK03893 43 LTEVQGEFGL---TTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIG 119 (496)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455667777 7778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhcccchh
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIMPESPR 296 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~pesp~ 296 (565)
++.+...+....++.|++++++|+++.++...+..+|.++++.++..+ .+||+.|++..++.++.++....+||+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~ 199 (496)
T PRK03893 120 MGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAED 199 (496)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence 999999999999999999999999999999999999999998887654 48999998866655555555566788876
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchh----------------hccccHHHHHHH
Q psy17080 297 WLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVM----------------DLWRTPLIRLIS 360 (565)
Q Consensus 297 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~l~~~~~~~~~~ 360 (565)
+...+++.++.++..+...+.+...................... .....+. ...+.+. +...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 277 (496)
T PRK03893 200 WKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAG-NLQNAAIVAVLGLLCAAIFISFMVQSSGKR-WPTG 277 (496)
T ss_pred hhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHh-hhcchhHHHHHHHHHHHHHHHHHHHhcccc-hhHH
Confidence 54332221111111111000000000000000000000000000 0000000 0000000 0000
Q ss_pred HHHHHHHHHHHH----hhhhhhhcc-CcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Q psy17080 361 FVQYIIWFSVYL----VYYGLVLNL-SNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLM 432 (565)
Q Consensus 361 ~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~ 432 (565)
.......+.... .....+.+. ...+.+. ........++.+++.++.+++.||+|||+.+..+.++.++..++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 357 (496)
T PRK03893 278 VMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIP 357 (496)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 000000000000 011122222 3444333 34455566778889999999999999999888777666655544
Q ss_pred HhhcCCchH-HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHH
Q psy17080 433 TLGFAPGSF-ITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGL 509 (565)
Q Consensus 433 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~ 509 (565)
+........ ......++.++......+....+..|.+|++.|++++|+.+....+|+.++|.+ ...+..++...+.+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~ 437 (496)
T PRK03893 358 VFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALAS 437 (496)
T ss_pred HhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHH
Confidence 431222222 222222222222222345566788999999999999999999999999999988 33455566655555
Q ss_pred HHHHH
Q psy17080 510 LGVVG 514 (565)
Q Consensus 510 ~~~~~ 514 (565)
.++..
T Consensus 438 ~~~~~ 442 (496)
T PRK03893 438 LSFSL 442 (496)
T ss_pred HHHHH
Confidence 44433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-27 Score=245.09 Aligned_cols=359 Identities=12% Similarity=0.115 Sum_probs=241.1
Q ss_pred eeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHhhh
Q psy17080 144 ISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAIS--PWFELYLVVRFFLGFF 221 (565)
Q Consensus 144 ~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~--~~~~~l~~~r~l~G~~ 221 (565)
..|+++ +..+.|++.+++.+++.+++++.|+++||+|||+++..+.++++++++++.++ .+++.+++.|+++|++
T Consensus 68 ~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~ 144 (465)
T TIGR00894 68 NPNFKW---SGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLA 144 (465)
T ss_pred CCCCCC---CHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHh
Confidence 346788 88889999999999999999999999999999999999999999998887554 5688899999999999
Q ss_pred hhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHHHhh-hcccchh
Q psy17080 222 CVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS----HNWRLLQWVITIPTIFFLTLWW-IMPESPR 296 (565)
Q Consensus 222 ~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~~Wr~~~~~~~~~~~~~~~~~~-~~pesp~ 296 (565)
.+...+....++.|++|+++|+++.++...+..+|.++++.++..+ .+||+.|++.+++.++..+.++ +.+|+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~ 224 (465)
T TIGR00894 145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPS 224 (465)
T ss_pred cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999999999998887654 3899999998888776665544 4567765
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHH-hhh
Q psy17080 297 WLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYL-VYY 375 (565)
Q Consensus 297 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~ 375 (565)
.... .+.+|. +.. ++..+++..+.+.+..++++++++.++...+..+........ ..|
T Consensus 225 ~~~~-~~~~~~-~~i-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (465)
T TIGR00894 225 IHPC-ISKFEK-KYI-------------------NSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTY 283 (465)
T ss_pred cCCC-CCHHHH-HHH-------------------HhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 011111 000 000001111112234578899999888777665554444332 333
Q ss_pred hhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHH--------HHHHHHHH--HHHHHHHhhcCCchHH
Q psy17080 376 GLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRP--------LCLTTLGA--GLACLMTLGFAPGSFI 442 (565)
Q Consensus 376 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~--------l~~~~~~~--~~~~~~~~~~~~~~~~ 442 (565)
...+..+..+.+. .....+..++.+++.+++|++.||+++|+. +..+.... ++..+.......+.+.
T Consensus 284 lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (465)
T TIGR00894 284 LPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYL 363 (465)
T ss_pred HHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 3333333344433 334445567788899999999998754321 11111111 1111111111122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH--HHH---hhhhhHHHHHHHHHHHH
Q psy17080 443 TISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWH--MQS---INIHFPMGLLGVVGVLG 517 (565)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~--~~~---~~~~~~~~~~~~~~~i~ 517 (565)
.++...+.+++.+...+.......|..|. .+|.+.|+.++.+.+|++++|.+.. .+. ..+...|.+.+++.+++
T Consensus 364 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~ 442 (465)
T TIGR00894 364 TIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILC 442 (465)
T ss_pred HHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHH
Confidence 33334444444444445555566677775 7899999999999999999998833 222 23666778888777777
Q ss_pred HHHHhhcccC
Q psy17080 518 GLSVLLLPDT 527 (565)
Q Consensus 518 ~~~~~~l~et 527 (565)
.++..+.++.
T Consensus 443 ~i~~~~~~~~ 452 (465)
T TIGR00894 443 VIFYLIFGSA 452 (465)
T ss_pred HHHeeeeecc
Confidence 7666555443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-26 Score=233.61 Aligned_cols=329 Identities=15% Similarity=0.143 Sum_probs=231.0
Q ss_pred eeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHH---Hh-----cchhHHHHHH
Q psy17080 143 IISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLV---AI-----SPWFELYLVV 214 (565)
Q Consensus 143 i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~---~~-----~~~~~~l~~~ 214 (565)
+.+|+|+ +..+.|++.+++.+++.+++++.|+++||+|||++++.+.++..++.+.. ++ .++++.+++.
T Consensus 42 l~~~lg~---s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (392)
T PRK12382 42 VHHDLGF---GNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVG 118 (392)
T ss_pred HHHhcCC---cHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHH
Confidence 4678898 88999999999999999999999999999999999999988877665432 22 3578899999
Q ss_pred HHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhc
Q psy17080 215 RFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIM 291 (565)
Q Consensus 215 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~ 291 (565)
|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.++..+ .+||+.+.+..+..++.+......
T Consensus 119 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 198 (392)
T PRK12382 119 RLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGTV 198 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998898899999999999999999999999999999988887654 489887766544433333222223
Q ss_pred ccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccc---cHHHHHHHHHHHHHHH
Q psy17080 292 PESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWR---TPLIRLISFVQYIIWF 368 (565)
Q Consensus 292 pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~ 368 (565)
||.++. ++ ++.+.++.+| .+.+.... ..+...
T Consensus 199 ~~~~~~---~~----------------------------------------~~~~~~~~~~~~~~~~~~~~l--~~~~~~ 233 (392)
T PRK12382 199 RKVPAH---AG----------------------------------------ERPSLWSVVGLIWKPGLGLAL--QGVGFA 233 (392)
T ss_pred cCCCCC---cc----------------------------------------cCchHHHHHHHHHHhHHHHHH--HHHHHh
Confidence 332110 00 0000111111 11111111 001010
Q ss_pred HHHHhhhhhhhccCcCCC-cHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHH
Q psy17080 369 SVYLVYYGLVLNLSNIGG-DVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLA 447 (565)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (565)
....+. +.+..+.+. .........+++.+++.++.+++.||+|+|+.+..+..+.+++.+++. +.++.+...+..
T Consensus 234 --~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 309 (392)
T PRK12382 234 --VIGTFV-SLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLW-LAPTAWVALAGA 309 (392)
T ss_pred --HHHHHH-HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH-HcccHHHHHHHH
Confidence 011111 111111221 223334455667788899999999999999998888887777776665 445555555556
Q ss_pred HHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q psy17080 448 MVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLL 523 (565)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 523 (565)
++.+++.+...+...+...|.+|++.|+++.|+.++...+|..++|.+ ...+..++...+.+.+++.+++.++.+.
T Consensus 310 ~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 310 ALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 666777777777777888899999999999999999999999999988 4456678888888888888777665543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-26 Score=238.62 Aligned_cols=350 Identities=11% Similarity=-0.052 Sum_probs=247.5
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|++.+|+|. +..+.+|+.+.|.+++.++.+++|+++||+|||++++.+.++++++++++++++|++.++++|+++|
T Consensus 29 ~p~i~~~l~~---s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G 105 (495)
T PRK14995 29 APTLSMTLGA---SGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLA 105 (495)
T ss_pred HHHHHHHhCC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6889999998 8888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhcccc-ccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHH-Hhhhcccc
Q psy17080 220 FFCVSIVFSGFVLCMELV-GGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLT-LWWIMPES 294 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~-~~~~~pes 294 (565)
++.+...+.....+.+++ |+++|+++.++......+|..++|.++..+ .+||+.|++.....++.++ ..+++||+
T Consensus 106 ~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 106 IGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999998888888887765 679999999999999999999999998776 4899999997766555443 45667876
Q ss_pred hhHHHhcCCHHHHHHHHH---------HHHHHcCCC-CchhHHH-------HHHHHhhhhccccCcccchhhccccHHHH
Q psy17080 295 PRWLVSMGRNKEAMKILG---------DAAKFNSRK-LPLNLEK-------LLKESVLSTNQDVGKKVQVMDLWRTPLIR 357 (565)
Q Consensus 295 p~~l~~~~~~~~a~~~l~---------~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (565)
|+. .+++.+.....+. ......+.. ....... ........+. +.+.+.-..+++|++.++
T Consensus 186 ~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~-~~~~p~~~~~lf~~~~~~ 262 (495)
T PRK14995 186 AGR--RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQL-AASRPMIDMRLFTHRIIL 262 (495)
T ss_pred CCC--CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcCHHHhCCcccH
Confidence 531 1111111111100 000000000 0000000 0000001111 112222235688888877
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccC-cCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Q psy17080 358 LISFVQYIIWFSVYLVYYGLVLNLS-NIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMT 433 (565)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~ 433 (565)
...+..++.........+..+.+.+ ..+.+ ........++...++.++.|++.||+|+|+.+..+.++.+++.+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l 342 (495)
T PRK14995 263 SGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGL 342 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 6655555444433333333333332 23333 3344555667778889999999999999998888887777666555
Q ss_pred hhcC--CchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 434 LGFA--PGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 434 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
.... .+.+......++.+++.+...+.....+.+..|++.++.+.++.++...+|+.+++.+
T Consensus 343 ~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai 406 (495)
T PRK14995 343 AMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAI 406 (495)
T ss_pred HHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 4222 2334445566777888888888888888899999999999999999999999999877
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-26 Score=231.96 Aligned_cols=344 Identities=12% Similarity=0.022 Sum_probs=244.3
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|.+.+++++ +..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|
T Consensus 30 ~~~i~~~~~~---s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G 106 (394)
T PRK03699 30 MGPIAEYFNL---PVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLG 106 (394)
T ss_pred hHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 6788899999 8889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHHHhhhcccch
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS----HNWRLLQWVITIPTIFFLTLWWIMPESP 295 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~~Wr~~~~~~~~~~~~~~~~~~~~pesp 295 (565)
++.+...+....++.|++|+++|++..+....+..+|..+++.+...+ .+||+.|++.+++.++..++.++ .+.|
T Consensus 107 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p 185 (394)
T PRK03699 107 VVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF-SEFP 185 (394)
T ss_pred HhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh-cCCc
Confidence 999988888999999999999999999888888888888877765432 38999999888776665544332 2222
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHH-Hhh
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVY-LVY 374 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~ 374 (565)
+. .+.+ + ++. ++ ..++.+ ++.++...+..++...... ...
T Consensus 186 ~~--~~~~----------------~---------------~~~-~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 226 (394)
T PRK03699 186 AL--GKHA----------------P---------------KAD-KP----VAKEKW-GIGVLFLAIAALLYILAQLTFIS 226 (394)
T ss_pred cc--cccC----------------c---------------ccc-Cc----cccccC-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0000 0 000 00 001111 2333333333322222222 222
Q ss_pred hhhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q psy17080 375 YGLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGK 451 (565)
Q Consensus 375 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (565)
+...+..+..+.+. ........++.+++.++.+++.||++||+.+.....+.++.++++. ..++.+...+..++.+
T Consensus 227 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G 305 (394)
T PRK03699 227 WVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFV-NTDDPSHLLYAILGLG 305 (394)
T ss_pred HHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH-HcCCchHHHHHHHHHH
Confidence 22223223344433 2333445567788999999999999999988877766666555554 4444444444556667
Q ss_pred HHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhcccCC
Q psy17080 452 FAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLLPDTT 528 (565)
Q Consensus 452 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~et~ 528 (565)
++.+..++...++..|..|.+ ++...|.......+|..++|.+ ...+..++...+++.+++.+++.++++.++++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (394)
T PRK03699 306 FFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGFVS 383 (394)
T ss_pred HHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 777777777777777877644 5677888888889999999998 345667788888888888777777666666543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-26 Score=233.01 Aligned_cols=350 Identities=18% Similarity=0.167 Sum_probs=210.7
Q ss_pred ccceeeccccccCcchhh-HHHHHHH-----HHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhH----
Q psy17080 140 GHTIISEWDLVCSNSSLE-SLAEMVF-----LLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFE---- 209 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~-~l~~s~~-----~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~---- 209 (565)
.|.+.+|+++ ++.+. ++..+.. .++..+++++.|+++||+|||++++.+.+++++++++++++++++
T Consensus 38 ~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 114 (434)
T PRK15075 38 ATAIAKTFFP---AGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGL 114 (434)
T ss_pred HHHHHHHhCC---CCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 6788899988 44333 3333322 233357899999999999999999999999999999999999987
Q ss_pred ----HHHHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh-----------cchhHHH
Q psy17080 210 ----LYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS-----------HNWRLLQ 274 (565)
Q Consensus 210 ----~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-----------~~Wr~~~ 274 (565)
.+++.|+++|++.+...+....++.|++|+++|+++.++...+..+|..+++.++..+ .+||+.|
T Consensus 115 ~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f 194 (434)
T PRK15075 115 AAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPF 194 (434)
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHH
Confidence 4689999999999999999999999999999999999998887777776665554432 4899999
Q ss_pred HHHHHHHHHHHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccH
Q psy17080 275 WVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTP 354 (565)
Q Consensus 275 ~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 354 (565)
++..+...+........||++++...++ + .+.+..+++..+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~-----------------------------------~--~~~~~~~~~~~~~~ 237 (434)
T PRK15075 195 LIGCLIVPFIFLIRRSLEETEEFLARKH-----------------------------------R--PSMREIFRSLAANW 237 (434)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHhhh-----------------------------------c--cccccHHHHHHHhH
Confidence 8755443322222233444432110000 0 00001112222333
Q ss_pred HHHHHHHHH-HHHHHHH-HHhhhhhhhccCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Q psy17080 355 LIRLISFVQ-YIIWFSV-YLVYYGLVLNLSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLA 429 (565)
Q Consensus 355 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~ 429 (565)
..+...... ++..... ...++...+..+..+.+ ......+.+++.+++.++.|++.||+|||+.+..+.++..+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~ 317 (434)
T PRK15075 238 RIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILT 317 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 222221111 1111111 22223333222223433 233444566778889999999999999999887765544332
Q ss_pred HH-HHhhc-C-CchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHH-HHHHHHHHH--HHHHHhhh
Q psy17080 430 CL-MTLGF-A-PGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAG-VALILIPYL--WHMQSINI 503 (565)
Q Consensus 430 ~~-~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-lg~~i~p~i--~~~~~~~~ 503 (565)
.+ .+... . +.........++.+++.+...+....+..|.+|++.|+++.|+.+..+. +++.++|.+ ...+..++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 318 AYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 21 11111 1 1112222223344555566566667888999999999999998755444 457778887 33344453
Q ss_pred hhH-HHHHHHHHHHHHHHHhhcccCCC
Q psy17080 504 HFP-MGLLGVVGVLGGLSVLLLPDTTG 529 (565)
Q Consensus 504 ~~~-~~~~~~~~~i~~~~~~~l~et~~ 529 (565)
... ........+++.+..+.+++.++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (434)
T PRK15075 398 KAAPGYWLSFAAVCGLIATLVLYRRRG 424 (434)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccccc
Confidence 211 11111122333334455666555
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-26 Score=230.32 Aligned_cols=338 Identities=13% Similarity=0.110 Sum_probs=233.8
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|.+.+|+|+ +..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|
T Consensus 26 l~~~~~~~g~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G 102 (382)
T PRK10091 26 LTELAHDVGI---SIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSG 102 (382)
T ss_pred hHHHHHHcCC---CHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 6778899999 8888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHH-hhhcccch
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTL-WWIMPESP 295 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~-~~~~pesp 295 (565)
++.+...+....++.|+.++++|+++.++...+..+|..+++.++..+ .+||+.|++.++..++..+. ++++||.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 103 FPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred hhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999998888889999999999999999999999999999988876654 48999999988776555443 45577753
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHH-HHhh
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSV-YLVY 374 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~ 374 (565)
+ +.+. +. + ...+.+|++..+.......+..... ....
T Consensus 183 ~----~~~~--------------------~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (382)
T PRK10091 183 D----EAKG--------------------GL----R--------------EQFHFLRSPAPWLIFAATMFGNAGVFAWFS 220 (382)
T ss_pred c----cccc--------------------CH----H--------------HHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 2 0000 00 0 0012345555444333332222111 1112
Q ss_pred hhhhhccCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q psy17080 375 YGLVLNLSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGK 451 (565)
Q Consensus 375 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (565)
|..++..+..+.+ ........+++.+++.++.+++.||+++|+.+..+..+.+++.+++....+..+...+..++.+
T Consensus 221 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 300 (382)
T PRK10091 221 YIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICC 300 (382)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2222332233333 2344556677888999999999999999999888887777766555423333333333344444
Q ss_pred HHHHHHHHH-HHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHH-hhhhhHHHHHHHHHHHHHHHHhhc
Q psy17080 452 FAISSSNVI-IPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQS-INIHFPMGLLGVVGVLGGLSVLLL 524 (565)
Q Consensus 452 ~~~~~~~~~-~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~-~~~~~~~~~~~~~~~i~~~~~~~l 524 (565)
++.....+. ......+..|.+.++.+ ..+....+|..++|.+ ...+. .++...+.+.+++.++........
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 301 AGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred HHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 443333332 22344455555555544 3466778999999988 33443 467777777776666655544333
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=233.12 Aligned_cols=349 Identities=16% Similarity=0.120 Sum_probs=244.0
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|.+.+++++ +..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.++++++++++.+++.|+++|
T Consensus 33 ~p~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 109 (471)
T PRK10504 33 LPSMAQSLGE---SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQG 109 (471)
T ss_pred HHHHHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6778888998 8888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHH-hhhcccch
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTL-WWIMPESP 295 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~-~~~~pesp 295 (565)
++.+...+...+++.|++|+++|+++.++......+|..+++.++..+ .+||+.|++.....++..+. ....|+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 189 (471)
T PRK10504 110 VGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYT 189 (471)
T ss_pred hhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999999988887654 48999999877665554444 34445443
Q ss_pred hHHHhcCCHHHHHHHHHHH------HHHcCCCC---ch-hHHHH-------HHHHhhhhccccCcccchhhccccHHHHH
Q psy17080 296 RWLVSMGRNKEAMKILGDA------AKFNSRKL---PL-NLEKL-------LKESVLSTNQDVGKKVQVMDLWRTPLIRL 358 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~------~~~~~~~~---~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (565)
. .+.|.+.+.....-. ...++.+. .. ..... ......++....++..+ .+++|+|.++.
T Consensus 190 ~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~ 265 (471)
T PRK10504 190 M---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFS-LKLFRTRTFSL 265 (471)
T ss_pred c---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccC-HHHhcccchHH
Confidence 1 122222221111000 00011110 00 00000 00000111111112222 35789998887
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccC-cCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHh
Q psy17080 359 ISFVQYIIWFSVYLVYYGLVLNLS-NIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTL 434 (565)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~ 434 (565)
.....++.+......++..+++.+ ..+.+. ........+..+++.++.+++.||+|||+.+..+..+.++..+++.
T Consensus 266 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~ 345 (471)
T PRK10504 266 GLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFM 345 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 776666665554444444444433 234433 2333444556667778899999999999999888887777766655
Q ss_pred hcCCch--HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 435 GFAPGS--FITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 435 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
...... +......++.+++.+..++.......+..|++.++.+.|+.++...+|..++|.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i 408 (471)
T PRK10504 346 LVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTI 408 (471)
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHH
Confidence 232222 2223334455677777778888888899999999999999999999999998887
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-26 Score=229.72 Aligned_cols=318 Identities=16% Similarity=0.086 Sum_probs=238.6
Q ss_pred cceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcc-----hhHHHHHHH
Q psy17080 141 HTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISP-----WFELYLVVR 215 (565)
Q Consensus 141 ~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~-----~~~~l~~~r 215 (565)
|....+++. +..+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.++.+ +++.+++.|
T Consensus 23 ~~~~~~~~~---s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (365)
T TIGR00900 23 PLYVLAGTG---SASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLA 99 (365)
T ss_pred HHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 445566676 788899999999999999999999999999999999999999999888888877 999999999
Q ss_pred HHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhc-
Q psy17080 216 FFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIM- 291 (565)
Q Consensus 216 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~- 291 (565)
++.|++.+...+...+++.|++|+++|+++.++.+.+..+|.++++.++..+ .+||+.|++.++..++..+..+.+
T Consensus 100 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 179 (365)
T TIGR00900 100 GILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVR 179 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999887664 489999988777666555444333
Q ss_pred -ccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHH
Q psy17080 292 -PESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSV 370 (565)
Q Consensus 292 -pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 370 (565)
||.++. .+. + .+.+. .+ +....++.++|+|.++...+...+.....
T Consensus 180 ~~~~~~~----~~~-~---------------~~~~~---~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (365)
T TIGR00900 180 IPELAAS----EIQ-A---------------LSNAV---LR----------DTREGIKFVLKNPLLRTLLLLALLFNLVF 226 (365)
T ss_pred cccCCCc----ccc-c---------------cchhH---HH----------HHHhHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 332210 000 0 00000 00 00113455677888776666555444433
Q ss_pred HHhh-hhhhhccCc-CCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCc-hHHHH
Q psy17080 371 YLVY-YGLVLNLSN-IGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPG-SFITI 444 (565)
Q Consensus 371 ~~~~-~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 444 (565)
.... ...+.+.++ .+.+ ........+++.+++.++.+++.||.+||+.+..+..+.+++++.+. +.++ .+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 305 (365)
T TIGR00900 227 APAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVG-LTPPNFPLFL 305 (365)
T ss_pred HHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH-hhchhHHHHH
Confidence 2222 222332222 3322 23444556677888899999999999999988887777777666665 4443 45555
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 445 SLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
+..++.+++.+...+...++..|..|++.|+++.|+.++...++..++|.+
T Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~ 356 (365)
T TIGR00900 306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLIL 356 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777888888888889999999999999999999999999999999988
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=233.52 Aligned_cols=319 Identities=21% Similarity=0.211 Sum_probs=233.0
Q ss_pred ceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhh
Q psy17080 142 TIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFF 221 (565)
Q Consensus 142 ~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~ 221 (565)
.+.+++++ +..+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++..++++++.+++.|++.|++
T Consensus 22 ~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 98 (352)
T PF07690_consen 22 YLAEELGL---SPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIG 98 (352)
T ss_dssp HHHCCSTT---TSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccc
Confidence 56788888 888899999999999999999999999999999999999999999977777778888999999999999
Q ss_pred hhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHH-hhhcccchhH
Q psy17080 222 CVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSH---NWRLLQWVITIPTIFFLTL-WWIMPESPRW 297 (565)
Q Consensus 222 ~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~---~Wr~~~~~~~~~~~~~~~~-~~~~pesp~~ 297 (565)
.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+. +||+.|++.++..++..++ .++++++|+.
T Consensus 99 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~ 178 (352)
T PF07690_consen 99 SGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPP 178 (352)
T ss_dssp HHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STT
T ss_pred cccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccc
Confidence 99999999999999999999999999999999999999999988764 7999999988887777654 3445544321
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCccc-chhhccccHHHHHHHHHHHHHHHHHHHhhhh
Q psy17080 298 LVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKV-QVMDLWRTPLIRLISFVQYIIWFSVYLVYYG 376 (565)
Q Consensus 298 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (565)
...+.+.+ ++.+.+++.. .++.+++++.++...+..+...+........
T Consensus 179 ~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (352)
T PF07690_consen 179 RERESPKE------------------------------SESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFF 228 (352)
T ss_dssp TT--SSTT------------------------------TT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccc------------------------------cccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcc
Confidence 00000000 0000001111 2556666665552333333332233222222
Q ss_pred hhhc-cCcCCCc-HHH---HHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCC--chHHHHHHHHH
Q psy17080 377 LVLN-LSNIGGD-VYL---NTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAP--GSFITISLAMV 449 (565)
Q Consensus 377 ~~~~-~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 449 (565)
.+.+ .+..+.+ ... ...+.++..+++.++.+++.||+++|+..........+..+.+..... +........++
T Consensus 229 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (352)
T PF07690_consen 229 LPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFL 308 (352)
T ss_dssp HHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHH
T ss_pred cchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3332 3444444 222 345566677777999999999999988777777666666655552221 22444555666
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy17080 450 GKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIP 493 (565)
Q Consensus 450 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p 493 (565)
.+++.+...+....+..|..|++.|+++.|+.++...+|+.++|
T Consensus 309 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 309 IGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 77888888899999999999999999999999999999999998
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=226.52 Aligned_cols=335 Identities=13% Similarity=0.028 Sum_probs=234.8
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|.+.+|+++ +..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|+++|
T Consensus 29 lp~~~~~~~~---s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 105 (381)
T PRK03633 29 VPLWLAQEHL---PTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAG 105 (381)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6778888998 8889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHHhh-hcccchh
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSHN--WRLLQWVITIPTIFFLTLWW-IMPESPR 296 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~~--Wr~~~~~~~~~~~~~~~~~~-~~pesp~ 296 (565)
++.+...+.....+.+..++++|+++.+....+..+|..+++.++..+.. ++...+..++.....+...+ ..+|++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (381)
T PRK03633 106 IGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVLAAILPLLFTRILNQQA 185 (381)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 99999888888888899999999999999999999999999988876532 22223332222221111111 1111100
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhhh
Q psy17080 297 WLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYG 376 (565)
Q Consensus 297 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (565)
++ ++..+.++.+|+|.++................+..
T Consensus 186 ----------------------------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (381)
T PRK03633 186 ----------------------------------------EN---HDSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGL 222 (381)
T ss_pred ----------------------------------------CC---CCCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 00 01123445666766554433222222222222222
Q ss_pred hhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy17080 377 LVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFA 453 (565)
Q Consensus 377 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (565)
.+.+.++.+.+. .....+..+..+++.+..+++.||+++|+.+..+..+.+++++.+. .. ........+.+++
T Consensus 223 lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~~-~~~~~~~~l~g~~ 298 (381)
T PRK03633 223 MPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---SQ-AAMAPALFILGAA 298 (381)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---hh-HHHHHHHHHHHHH
Confidence 343444444332 3334455677788999999999999999988887777766655433 11 1222233344444
Q ss_pred HHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhc
Q psy17080 454 ISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLL 524 (565)
Q Consensus 454 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 524 (565)
....+|.....+.|..|++.++...+..++...+|++++|.+ ...+..++...|.+.+.+.++..+..+..
T Consensus 299 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 299 GFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence 455678888888899998887888888888889999999988 44566777777888777776655444433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.1e-26 Score=229.66 Aligned_cols=336 Identities=17% Similarity=0.182 Sum_probs=237.5
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|.+.+++++ +..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|
T Consensus 28 ~p~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 104 (385)
T TIGR00710 28 FPEIAADLST---PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQA 104 (385)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5778889998 8888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHH-hhhcccch
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTL-WWIMPESP 295 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~-~~~~pesp 295 (565)
++.+...+...+++.|++|+++|+++.++.+....+|..+++.++..+ .+||+.+++.++..++..+. +++.||++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 105 FGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETL 184 (385)
T ss_pred cchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999988887654 48999999877766555444 45567754
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhh
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYY 375 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (565)
+.. .+ ++ . ++....+++++|+|.++...+...+.+........
T Consensus 185 ~~~---~~-~~-------------------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (385)
T TIGR00710 185 PYE---AR-IQ-------------------I--------------STYFETFLLLLKSKMFWGYALIYGASFGGFFAFFS 227 (385)
T ss_pred CCc---cc-CC-------------------H--------------HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 310 00 00 0 00011244567777777665554443333222221
Q ss_pred hhh-hccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhc--CC-ch-HHHHHHH
Q psy17080 376 GLV-LNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF--AP-GS-FITISLA 447 (565)
Q Consensus 376 ~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~--~~-~~-~~~~~~~ 447 (565)
..+ +..+..+.+. .......++..+++.++.+++.||+++|+.+..+..+..++.+++... .. .. .......
T Consensus 228 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (385)
T TIGR00710 228 GAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPM 307 (385)
T ss_pred cChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 122 2222333332 334445667788899999999999999998887776666555444311 11 12 2333344
Q ss_pred HHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy17080 448 MVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGV-ALILIPYLWHMQSINIHFPMGLLGVVGVLG 517 (565)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l-g~~i~p~i~~~~~~~~~~~~~~~~~~~~i~ 517 (565)
++.+++.+...+....+..|..| +.|+++.++.+..... |.+.+|.+... .......+.+.+....+.
T Consensus 308 ~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~-~~~~~~~~~~~~~~~~~~ 376 (385)
T TIGR00710 308 MFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLI-HGNTAWPMSLSCLVLAVV 376 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc-cccChHHHHHHHHHHHHH
Confidence 55667777778888888888887 5689999998887765 55555555422 223334444444443333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=227.04 Aligned_cols=339 Identities=11% Similarity=0.028 Sum_probs=236.1
Q ss_pred ccceee-ccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhc-----chhHHHHH
Q psy17080 140 GHTIIS-EWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAIS-----PWFELYLV 213 (565)
Q Consensus 140 ~~~i~~-~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~-----~~~~~l~~ 213 (565)
.+.+.+ |+++ +..+.+++.+++.+++.++.++.|++.||+|.|+++.++.++.++.+++.+++ ++++.+++
T Consensus 57 ~~~~~~~~~~l---s~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli 133 (462)
T PRK15034 57 TVNLNKIGFNF---TTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIV 133 (462)
T ss_pred HHHhhhhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHH
Confidence 344444 7999 88899999999999999999999999999999999999999999999999987 89999999
Q ss_pred HHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHH----HHHHHHHH-----------------hcchhH
Q psy17080 214 VRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYI----AISGIAYY-----------------SHNWRL 272 (565)
Q Consensus 214 ~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~----~~~~l~~~-----------------~~~Wr~ 272 (565)
.|++.|++ +..++.....+++|+|+++||++.++.....++|.. +.|.+... ..+||.
T Consensus 134 ~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~ 212 (462)
T PRK15034 134 IALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLAN 212 (462)
T ss_pred HHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHH
Confidence 99999998 778999999999999999999999999655555554 44433211 113777
Q ss_pred HHHHHHHHHHHHHHHhhh-cccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhcc
Q psy17080 273 LQWVITIPTIFFLTLWWI-MPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLW 351 (565)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~-~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 351 (565)
..++..++.++..++.++ .++.|. .+....+.++.+
T Consensus 213 ~~~~~~~~~iv~~i~~~~~~~~~~~-------------------------------------------~~~~~~~~~~vl 249 (462)
T PRK15034 213 AAWIWVPLLAIATIAAWSGMNDIAS-------------------------------------------SRASIADQLPVL 249 (462)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-------------------------------------------cccCHHHHHHHh
Confidence 777777766665555444 333221 000112345678
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhhhhhhc-cCcCCC-cHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Q psy17080 352 RTPLIRLISFVQYIIWFSVYLVYYGLVLN-LSNIGG-DVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLA 429 (565)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~ 429 (565)
|+|..|...+..++.+.......+.++++ ...++. +......+..+...++.+++|+++||+|+|+++.++.+++.++
T Consensus 250 k~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~ 329 (462)
T PRK15034 250 QRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIF 329 (462)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHH
Confidence 89988888777766655444333223222 222221 1222233445667788899999999999999999888777666
Q ss_pred HHHHhhcCCc-----hHHHHHHHHHHHHHHHHHHHHHHHhcccccch---------------------hhhhhHHHHHHH
Q psy17080 430 CLMTLGFAPG-----SFITISLAMVGKFAISSSNVIIPIYTAELFPT---------------------KMRNLGVGASSV 483 (565)
Q Consensus 430 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---------------------~~r~~~~g~~~~ 483 (565)
........+. .+...+..+...+..+......+-++...+|+ +.-|.+.|+...
T Consensus 330 ~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a 409 (462)
T PRK15034 330 SALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISA 409 (462)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHH
Confidence 5443323332 13333333344455555666667677777764 145788899999
Q ss_pred HHHHHHHHHHHHHH--HHH-hhhhhHHHHHHHHHHHHHHHHhhcc
Q psy17080 484 PAGVALILIPYLWH--MQS-INIHFPMGLLGVVGVLGGLSVLLLP 525 (565)
Q Consensus 484 ~~~lg~~i~p~i~~--~~~-~~~~~~~~~~~~~~~i~~~~~~~l~ 525 (565)
.+.+|+++.|.+.. .+. .++...++.+.+..+++.++.++.-
T Consensus 410 ~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 410 IGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999997722 222 3466678888888877777665443
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=228.09 Aligned_cols=355 Identities=14% Similarity=0.142 Sum_probs=256.4
Q ss_pred eeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHhhh
Q psy17080 144 ISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISP--WFELYLVVRFFLGFF 221 (565)
Q Consensus 144 ~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~ 221 (565)
..+|++ ++.+.+++.+.+++|+++++++.|+++||+|-|+++..+.++.+++++++.++. +++.+++.|+++|++
T Consensus 65 ~~~~~w---s~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~ 141 (466)
T KOG2532|consen 65 AGEYDW---SSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLG 141 (466)
T ss_pred CceecC---CHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHH
Confidence 567888 888889999999999999999999999999999999999999999999998874 556789999999999
Q ss_pred hhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHHHhh-hcccchh
Q psy17080 222 CVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS----HNWRLLQWVITIPTIFFLTLWW-IMPESPR 296 (565)
Q Consensus 222 ~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~~Wr~~~~~~~~~~~~~~~~~~-~~pesp~ 296 (565)
.|..+|+...+...|.|++||++..++...+..+|.++.-++++.+ .||++.|++.++.+++..++++ +..|+|.
T Consensus 142 ~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~ 221 (466)
T KOG2532|consen 142 QGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPS 221 (466)
T ss_pred HhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999999999877666553 4899999999999888777754 4566665
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHH-HHHHHhhh
Q psy17080 297 WLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIW-FSVYLVYY 375 (565)
Q Consensus 297 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~ 375 (565)
- + +...+++.+.++....++..+++.+.+++++++++.+|...+..+.-. ....+..|
T Consensus 222 ~---h------------------~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y 280 (466)
T KOG2532|consen 222 K---H------------------PNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTY 280 (466)
T ss_pred c---C------------------CCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 111111111122222222222225778999999999988777665543 34445555
Q ss_pred hhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCC---------hHHHHHHHHHHHHHHHHHhhcCCch-H-
Q psy17080 376 GLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGR---------RRPLCLTTLGAGLACLMTLGFAPGS-F- 441 (565)
Q Consensus 376 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~gr---------r~~l~~~~~~~~~~~~~~~~~~~~~-~- 441 (565)
...+.-+-++.+. +....+.-+...+..+++|.++||+.+ |..-.++....+++++.+. +.+.. .
T Consensus 281 ~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~-~~~~~~~~ 359 (466)
T KOG2532|consen 281 LPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLA-FTSDEHRL 359 (466)
T ss_pred hhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeee-ecCCCcch
Confidence 5555555555553 344556667788889999999998755 3333455566666666666 44432 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHH--HH---HHhhhhhHHHHHHHHHHH
Q psy17080 442 ITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLW--HM---QSINIHFPMGLLGVVGVL 516 (565)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~--~~---~~~~~~~~~~~~~~~~~i 516 (565)
..++++.+.....+...+..+.-..+..| +..+..+|+.+....+.++++|.+. .. ....|...|++.+++.++
T Consensus 360 ~a~~~l~~~~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~ 438 (466)
T KOG2532|consen 360 LAVILLTIAIGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIV 438 (466)
T ss_pred HHHHHHHHHHHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHH
Confidence 33333333323333333333444444444 5679999999999999999999992 22 234677888888888888
Q ss_pred HHHHHhhc
Q psy17080 517 GGLSVLLL 524 (565)
Q Consensus 517 ~~~~~~~l 524 (565)
+.+.+.+.
T Consensus 439 ~~i~f~~f 446 (466)
T KOG2532|consen 439 GNIIFLFF 446 (466)
T ss_pred hchheeEe
Confidence 87666554
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=238.64 Aligned_cols=362 Identities=14% Similarity=0.109 Sum_probs=241.1
Q ss_pred CCcccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHH-HH
Q psy17080 137 SSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLV-VR 215 (565)
Q Consensus 137 ~~~~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~-~r 215 (565)
+.+.+.+.+++++ +..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.++++++++++.+++ .|
T Consensus 39 ~~~~~~i~~~~g~---s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (455)
T TIGR00892 39 TVFFKELQQIFQA---TYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAG 115 (455)
T ss_pred hhhHHHHHHHhCc---chhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4457889999999 8888999999999999999999999999999999999999999999999999999998865 57
Q ss_pred HHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhc-
Q psy17080 216 FFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIM- 291 (565)
Q Consensus 216 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~- 291 (565)
++.|++.+...+....++.++++ ++|+++.++...+..+|..+++.++..+ .+||+.|++.++..++..+..+++
T Consensus 116 ~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~ 194 (455)
T TIGR00892 116 FITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMR 194 (455)
T ss_pred HHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999998877777888899995 7899999999999999998888776543 489999999888766555444333
Q ss_pred ccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHH
Q psy17080 292 PESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVY 371 (565)
Q Consensus 292 pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 371 (565)
++.+.. .+.+. +.++ +.. .+...+ + . ..+...++..+....+++++|.++...+..++..+...
T Consensus 195 ~~~~~~--~~~~~-~~~~------~~~-~~~~~~--~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 258 (455)
T TIGR00892 195 PVGPSQ--RVSKS-KSKE------GLP-PDGSTK--K-L---SKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFF 258 (455)
T ss_pred CCCccc--ccccc-cccc------cCC-CCCccc--c-c---cccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHcc
Confidence 322210 00000 0000 000 000000 0 0 00000000011111246788887766655444444333
Q ss_pred HhhhhhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhc--CChHHHHH--HHHHHHHHHHHHhhcCCchHHHH
Q psy17080 372 LVYYGLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKM--GRRRPLCL--TTLGAGLACLMTLGFAPGSFITI 444 (565)
Q Consensus 372 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~--grr~~l~~--~~~~~~~~~~~~~~~~~~~~~~~ 444 (565)
..+..++.+..+.+.+. .....+.+++.+++.++.+++.||. ++|+...+ +.++.+++.++.. ...+.+...
T Consensus 259 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~~ 337 (455)
T TIGR00892 259 APIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCA-LAGDYTGLV 337 (455)
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH-HhchHHHHH
Confidence 22222222223334332 3444556677788888899999973 33333332 2233333333333 344445555
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHh-hhhhHHHHHHHHHHHHHH
Q psy17080 445 SLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLW--HMQSI-NIHFPMGLLGVVGVLGGL 519 (565)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~--~~~~~-~~~~~~~~~~~~~~i~~~ 519 (565)
+..++.+++.+...+...+...|.+|++.++++.|+.++...+|++++|.+. ..+.. ++...|.+.+++.+++++
T Consensus 338 i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 338 IYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 5666777777777788889999999999999999999999999999999882 33444 466777777776665544
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=233.60 Aligned_cols=350 Identities=13% Similarity=0.106 Sum_probs=248.9
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|.+.+++|. +..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.++++++++++.+++.|+++|
T Consensus 25 ~p~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G 101 (485)
T TIGR00711 25 IPTIAGDLGS---SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQG 101 (485)
T ss_pred HHHHHHhcCC---ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 6788889998 7788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHH-hhhcccch
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTL-WWIMPESP 295 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~-~~~~pesp 295 (565)
++.+...+...+++.|++|+++|+++.++...+..+|..+++.++..+ .+||+.|++.+.+.++..+. .+++||++
T Consensus 102 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 102 FGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred hhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 999999999999999999999999999999999999999999887765 48999999987776555444 45567654
Q ss_pred hHHHhcCCHHHHHHHH--------HHHHHHcCCCC---chhHHHHHH-------HHhhhhccccCcccchhhccccHHHH
Q psy17080 296 RWLVSMGRNKEAMKIL--------GDAAKFNSRKL---PLNLEKLLK-------ESVLSTNQDVGKKVQVMDLWRTPLIR 357 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l--------~~~~~~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (565)
+. .+++.+.....+ .......+... +........ .....+.. ++++....++++++.++
T Consensus 182 ~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 258 (485)
T TIGR00711 182 PA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELT-DDNPLVDLRLFKYRNFT 258 (485)
T ss_pred cc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHc-CCCCccCHHHHcCCChH
Confidence 31 112222111110 00001111111 101000000 00001111 11122234678888877
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccC-cCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Q psy17080 358 LISFVQYIIWFSVYLVYYGLVLNLS-NIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMT 433 (565)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~ 433 (565)
...+..++..+......+..+.+.+ ..+.+ ........+++.+++.++.+++.||+|||+.+.++..+.+++..++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~ 338 (485)
T TIGR00711 259 IGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWR 338 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHH
Confidence 7666555554443333333333332 23333 2344555667888899999999999999999988888877777665
Q ss_pred hh-cCCc--hHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 434 LG-FAPG--SFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 434 ~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
.. ..++ .+......++.+++.+..++.......+..|++.|+++.|+.++...+|+.+++.+
T Consensus 339 ~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i 403 (485)
T TIGR00711 339 AFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTAL 403 (485)
T ss_pred hccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 51 2222 23444456667788877777777777788999999999999999999999999887
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=227.70 Aligned_cols=343 Identities=12% Similarity=0.040 Sum_probs=234.7
Q ss_pred cceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhh
Q psy17080 141 HTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGF 220 (565)
Q Consensus 141 ~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~ 220 (565)
+.+.+|++. +....+++.+.+.+++.+++++.|+++||+|||++++.+.++.++++++++++.+. ++.|+++|+
T Consensus 27 ~~~~~~~~~---s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~ 100 (393)
T PRK11195 27 IALLKELHY---PDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGI 100 (393)
T ss_pred HHHHHHcCC---cHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 344567776 77788999999999999999999999999999999999999999998888777664 788999999
Q ss_pred hhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHHHhhhcccchhHH
Q psy17080 221 FCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSHNW--RLLQWVITIPTIFFLTLWWIMPESPRWL 298 (565)
Q Consensus 221 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~~W--r~~~~~~~~~~~~~~~~~~~~pesp~~l 298 (565)
+.+...|...+++.|++|+++|+++.++.+....+|.+++|.++..+.+| +..+.+.+...++..+..+.+||+|+..
T Consensus 101 ~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~ 180 (393)
T PRK11195 101 GAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLGARR 180 (393)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 99999999999999999999999999999999999999999988876544 4444444444344444556788875421
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy17080 299 VSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLV 378 (565)
Q Consensus 299 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (565)
. ++.++..+.+ ++. ....+.++++|.++...+...+.+.......+..+
T Consensus 181 ~--~~~~~~~~~~-------------------~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (393)
T PRK11195 181 P--GQSWNPIALL-------------------RDF----------FHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVL 229 (393)
T ss_pred c--ccCCCHHHHH-------------------HHH----------HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000000000 000 00124567777766655554444444433333333
Q ss_pred hccC-cCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q psy17080 379 LNLS-NIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAI 454 (565)
Q Consensus 379 ~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (565)
.+.+ .++.+ ........+++.+++.++.+++.||.++|+.+..+. +.++..+.+. +.++.+......++.+++.
T Consensus 230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~ 307 (393)
T PRK11195 230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMA-LQHSLLPAYPLLILIGALG 307 (393)
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHH-HHhHHHHHHHHHHHHHHhh
Confidence 3222 22322 334455666778888999999999988887776664 3333333333 3333344444555667777
Q ss_pred HHHHHHHHHhcccccchhh-hhhHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHh
Q psy17080 455 SSSNVIIPIYTAELFPTKM-RNLGVGASSVPAGVALILIPYL-WHMQSINIHFPMGLLGVVGVLGGLSVL 522 (565)
Q Consensus 455 ~~~~~~~~~~~~e~~p~~~-r~~~~g~~~~~~~lg~~i~p~i-~~~~~~~~~~~~~~~~~~~~i~~~~~~ 522 (565)
+...+...+...+..|++. +|++.++.++...++..++..+ ......+....+.+.+...+++..+.+
T Consensus 308 g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK11195 308 GFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAMAL 377 (393)
T ss_pred hhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 7766667777788766655 7999999999999999888877 334556666666666555555555443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=234.89 Aligned_cols=343 Identities=13% Similarity=0.093 Sum_probs=230.8
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|.+.+++++ +..+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.+++++++.+++.|++.|
T Consensus 18 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 94 (379)
T TIGR00881 18 MPYLVEEIGL---SKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNG 94 (379)
T ss_pred hHHHHHHhCC---CHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5778889999 8889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHH-HHHHh---cchhHHHHHHHHHHHHHH-HHhhhcccc
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISG-IAYYS---HNWRLLQWVITIPTIFFL-TLWWIMPES 294 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~-l~~~~---~~Wr~~~~~~~~~~~~~~-~~~~~~pes 294 (565)
++.+...+...+++.|++|+++|+++.++...+..+|.++++. ++..+ .+||+.|++.++..++.. +.+++.||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 95 IFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred hhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence 9999999999999999999999999999999999999999883 44332 489999998877665543 445567776
Q ss_pred hhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhh
Q psy17080 295 PRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVY 374 (565)
Q Consensus 295 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 374 (565)
|+....+.+ ++. ..+..++ ...+++++.+..+...++++++|.++...+...+.+.......
T Consensus 175 ~~~~~~~~~-~~~-----------~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (379)
T TIGR00881 175 PQSCGLPPA-EEM-----------PNEEPDG------DAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGIL 236 (379)
T ss_pred ccccccCcc-ccC-----------ccccccc------ccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 542110000 000 0000000 0000001111122335667788887776666555544433222
Q ss_pred -hhhhhccCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcC-ChHH-HHHHHHHH-HHHHHHHhhcCC--chHHHHH
Q psy17080 375 -YGLVLNLSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMG-RRRP-LCLTTLGA-GLACLMTLGFAP--GSFITIS 445 (565)
Q Consensus 375 -~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~g-rr~~-l~~~~~~~-~~~~~~~~~~~~--~~~~~~~ 445 (565)
+...+..+..+.+ .........+..+++.++.+++.||.. ||+. +....... .++..... ..+ +.+....
T Consensus 237 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 315 (379)
T TIGR00881 237 DWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYW-LNPAANPLMDLI 315 (379)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh-cCcchhHHHHHH
Confidence 2222222333333 234455566778889999999999863 3332 22222121 22222222 211 2223333
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhh
Q psy17080 446 LAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIH 504 (565)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~ 504 (565)
..++.++......+....+..|.+|++.|+++.|+.+....+|+.++|.+ ...+..++.
T Consensus 316 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 376 (379)
T TIGR00881 316 CLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA 376 (379)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence 33444444444445566788999999999999999999999999999988 334444443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-25 Score=222.05 Aligned_cols=320 Identities=22% Similarity=0.271 Sum_probs=256.7
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.+.+.++++. +..+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.++..+.++++.+++.|++.|
T Consensus 22 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 98 (352)
T cd06174 22 LPLLAEDLGL---SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLG 98 (352)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5666777777 7888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhcccchh
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIMPESPR 296 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~pesp~ 296 (565)
++.+...+...+++.|++|+++|++..++...+..+|..+++.++..+ .+||+.+++.++..++..+..++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 174 (352)
T cd06174 99 LGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL---- 174 (352)
T ss_pred cccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 999999999999999999999999999999999999999999888765 3699999988877666655544322
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhhh
Q psy17080 297 WLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYG 376 (565)
Q Consensus 297 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (565)
|.++...+...+...........
T Consensus 175 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 197 (352)
T cd06174 175 ---------------------------------------------------------RLLLLLALAFFLLSFGYYGLLTY 197 (352)
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHHhHHHHHHHH
Confidence 22333333333333333222222
Q ss_pred hhhccCcC-CCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q psy17080 377 LVLNLSNI-GGD---VYLNTIISGIVEFPAIVISIFILLKMGRRR-PLCLTTLGAGLACLMTLGFAPGSFITISLAMVGK 451 (565)
Q Consensus 377 ~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (565)
.+....+. +.+ ........+++.+++.++.+++.||++||+ .+..+..+..++.+... ..++.+...+..++.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~g 276 (352)
T cd06174 198 LPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA-LAPSLALLLVALLLLG 276 (352)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHH
Confidence 22222221 222 344556677888899999999999999999 88888888888887776 5555566666777788
Q ss_pred HHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhc
Q psy17080 452 FAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLL 524 (565)
Q Consensus 452 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 524 (565)
++.+...+....+..|..|++.|++..|+.+....+|..++|.+ ...+..++...+.+.+++.+++.+..+++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 277 FGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred HHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHheec
Confidence 88888889999999999999999999999999999999999998 33446678888888888888877765543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=228.53 Aligned_cols=344 Identities=13% Similarity=0.041 Sum_probs=241.0
Q ss_pred ccceeeccccccCcc--hhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q psy17080 140 GHTIISEWDLVCSNS--SLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFF 217 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~--~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l 217 (565)
.|.+.+++++.-.+. ...|++.+++.++..+++++.|+++||+|||++++.+.++.+++.+++.++++++.+++.|++
T Consensus 37 l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (408)
T PRK09874 37 LPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRAL 116 (408)
T ss_pred HHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 667777888732111 235899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHH-hhhccc
Q psy17080 218 LGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTL-WWIMPE 293 (565)
Q Consensus 218 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~-~~~~pe 293 (565)
.|++.+ ..+....++.|++++++|+++.++...+..+|.++++.++..+ .+||+.+++.++..++..+. .+++||
T Consensus 117 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (408)
T PRK09874 117 LGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRE 195 (408)
T ss_pred HHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999854 5677778889999999999999999999999999988887654 48999999887776555444 455666
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHH-HHHHHHHHHH
Q psy17080 294 SPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFV-QYIIWFSVYL 372 (565)
Q Consensus 294 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~ 372 (565)
+++.. .+ ++ + .+. .+..+.++++..+...+. ..........
T Consensus 196 ~~~~~---~~-~~-~---------------~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (408)
T PRK09874 196 NFQPV---SK-KE-M---------------LHM------------------REVVTSLKNPKLVLSLFVTTLIIQVATGS 237 (408)
T ss_pred Ccccc---cc-hh-h---------------hHH------------------HHHHHhCcCCchHHHHHHHHHHHHHHHHH
Confidence 53210 00 00 0 000 001223444444332222 1111111111
Q ss_pred hhhhhhhccCcCC---Cc----HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHH
Q psy17080 373 VYYGLVLNLSNIG---GD----VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITIS 445 (565)
Q Consensus 373 ~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (565)
.......+..+.. .+ ......+.++..+++.+..+++.||++||+.+..+..+.+++.+... +.++.+...+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 316 (408)
T PRK09874 238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMS-FVQTPLQLGI 316 (408)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH-HhccHHHHHH
Confidence 1001111111111 11 11222334556677788889999999999998888877766665554 4455555555
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q psy17080 446 LAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLL 523 (565)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 523 (565)
..++.+++.+...+...+...+..|++.|++.+|+.+....+|..++|.+ ...+..++...|.+.+++.+++.+..++
T Consensus 317 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 317 LRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 66677788888788888888888999999999999999999999999998 3345668888899888888887776544
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=222.48 Aligned_cols=312 Identities=14% Similarity=0.065 Sum_probs=220.6
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.+.+.+++++ +..+.++..+++.++..++++++|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|
T Consensus 29 ~~~i~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 105 (401)
T PRK11043 29 FKAIQADLQT---SASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQA 105 (401)
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4667888998 8889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhcccchh
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIMPESPR 296 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~pesp~ 296 (565)
++.+...+...+++.|+++++++++..+.......+|..+++.++..+ .+||+.|++.++..++..+..++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (401)
T PRK11043 106 VGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKK 185 (401)
T ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 998888888888999999999998888888777788888887776653 48999999888777766666556665532
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhhh
Q psy17080 297 WLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYG 376 (565)
Q Consensus 297 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (565)
. .+ ++ +++.++++++|+|.++...+...+........+..
T Consensus 186 ~----~~-~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (401)
T PRK11043 186 A----RK-QS-----------------------------------QDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTG 225 (401)
T ss_pred c----cc-cc-----------------------------------hHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 00 00113455667776654443333222211111111
Q ss_pred hhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH---hhc-CCchHHHHHHHHH
Q psy17080 377 LVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMT---LGF-APGSFITISLAMV 449 (565)
Q Consensus 377 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~ 449 (565)
.+...++.+.+. ........++.+++.++.+++.||+++|+.........+++.+.+ ... .+..+.......+
T Consensus 226 ~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (401)
T PRK11043 226 SPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCV 305 (401)
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 222333344433 223334455677788888999999999886655544443333222 211 2222333444555
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 450 GKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 450 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
.+++.+..++.......+..| +.++++.|+.++....++..++.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~ 350 (401)
T PRK11043 306 MAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLL 350 (401)
T ss_pred HHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHH
Confidence 677777778888777777777 468999999999888777777776
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-25 Score=223.22 Aligned_cols=347 Identities=13% Similarity=0.066 Sum_probs=230.3
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHH---h-cchhHHHHHHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVA---I-SPWFELYLVVR 215 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~---~-~~~~~~l~~~r 215 (565)
.+.+.+|+++ +..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++++. + .++++.+++.|
T Consensus 36 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 112 (402)
T TIGR00897 36 LSPFLKALGL---SPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFY 112 (402)
T ss_pred HHHHHHHhCC---CHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHH
Confidence 4566688898 888999999999999999999999999999999999999999988877653 3 35788889999
Q ss_pred HHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHH-HHHHHHHHHh---cchhHHHHHHHHHHHHHH-HHhhh
Q psy17080 216 FFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGY-IAISGIAYYS---HNWRLLQWVITIPTIFFL-TLWWI 290 (565)
Q Consensus 216 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~-~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~-~~~~~ 290 (565)
++.|++.+...+...+.+.+++++++|++++++.+.+.++|. ++++.++..+ .+|+..++......++.. +..++
T Consensus 113 ~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 192 (402)
T TIGR00897 113 GIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFS 192 (402)
T ss_pred HHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhc
Confidence 999999888888888889999999999999999999999997 5677776543 365555444332222222 22333
Q ss_pred cccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHH
Q psy17080 291 MPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSV 370 (565)
Q Consensus 291 ~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 370 (565)
.++.++. .+.+ + + .+. ++....+++++|+|.++...+..++.....
T Consensus 193 ~~~~~~~--~~~~--~-------------~---~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (402)
T TIGR00897 193 NKDIFTP--QHMQ--T-------------R---EKF--------------SELGKAATILFTNPNVLLGGMVRIINTIGL 238 (402)
T ss_pred cCCCCCc--cccc--C-------------C---cch--------------hhHHHHHHHHHcChhHHHHHHHHHHHHHHH
Confidence 3433110 0000 0 0 000 000112446788888776655544433332
Q ss_pred HHhhhhhhhccCcCCCcHH---HHHHHHHHHHHHHHHHHHHHHhhcCChHHHH-HHHHHHHHHHHHHhhc----CCchHH
Q psy17080 371 YLVYYGLVLNLSNIGGDVY---LNTIISGIVEFPAIVISIFILLKMGRRRPLC-LTTLGAGLACLMTLGF----APGSFI 442 (565)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~-~~~~~~~~~~~~~~~~----~~~~~~ 442 (565)
.......+.+.++.+.+.. .......++.+++.++.+++.||++||+.+. .+.+..+++.+.+... ..+.+.
T Consensus 239 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~ 318 (402)
T TIGR00897 239 FGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAV 318 (402)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHH
Confidence 2222223333444444332 3334556778899999999999999888654 2333333332222211 122334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHH
Q psy17080 443 TISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLS 520 (565)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~ 520 (565)
..+..++.+++.+...+ ......|..| +.|+++.|+.+....+|+.++|.+ ...+..++...+++.+++.+++.++
T Consensus 319 ~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~ 396 (402)
T TIGR00897 319 ALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFL 396 (402)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 44445555665555434 3445567655 579999999999999999999988 4456678888888888888887777
Q ss_pred Hhhcc
Q psy17080 521 VLLLP 525 (565)
Q Consensus 521 ~~~l~ 525 (565)
..+++
T Consensus 397 ~~~~~ 401 (402)
T TIGR00897 397 TAFIR 401 (402)
T ss_pred HHHhc
Confidence 66553
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=222.92 Aligned_cols=316 Identities=12% Similarity=0.070 Sum_probs=225.3
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.+.+.+++++ +..+.++..+.+.+++.+++++.|+++||+|||++++.+.++.+++.+++.++++++.+++.|++.|
T Consensus 36 ~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 112 (406)
T PRK15402 36 MLAVVEDFNA---GAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQG 112 (406)
T ss_pred hHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5667889998 8888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHH-hhhcccch
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTL-WWIMPESP 295 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~-~~~~pesp 295 (565)
++.+...+...+++.|++++++|.+..++......+|..++|.++..+ .+||+.+++.++..++..+. ++.+||++
T Consensus 113 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 113 IGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred hHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999988889999999999999999988888877778888888776553 48999999877776655543 44567764
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHh-h
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLV-Y 374 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~ 374 (565)
+.. ++ + .+ . ++...++++++++|.++...+...+........ .
T Consensus 193 ~~~---~~-~----------------~~--~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (406)
T PRK15402 193 GRV---GE-K----------------LS--L--------------KELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIA 236 (406)
T ss_pred ccc---cc-c----------------cc--H--------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 310 00 0 00 0 000112456778887776555444333322111 1
Q ss_pred hhhhhccCcCCCcHH---HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcC---C-chHHHHHHH
Q psy17080 375 YGLVLNLSNIGGDVY---LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFA---P-GSFITISLA 447 (565)
Q Consensus 375 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~ 447 (565)
+...+.....+.+.. .......++.+++.++.+++.||+++|+.+..+.++.+++.+++.... . ..+......
T Consensus 237 ~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (406)
T PRK15402 237 LSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGL 316 (406)
T ss_pred HhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHH
Confidence 112222222333322 222334456778889999999999999988888776666655544211 1 223334445
Q ss_pred HHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 448 MVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
++.+++.+...+......... +++.|++..++.++...+|..+++.+
T Consensus 317 ~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~ 363 (406)
T PRK15402 317 SLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIEL 363 (406)
T ss_pred HHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHH
Confidence 566677766666555554443 34789999999999999999999888
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=221.90 Aligned_cols=338 Identities=13% Similarity=0.055 Sum_probs=221.9
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|++.++++. +....++..++++++++++++++|+++||+|||++++.+.+++++++++++++++++.++++|+++|
T Consensus 39 l~~i~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G 115 (413)
T PRK15403 39 IINVVRDFNA---DVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQG 115 (413)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678889998 8888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHH-hhhcccch
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTL-WWIMPESP 295 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~-~~~~pesp 295 (565)
++.+...+...+++.|++++++|+++.++...+..+|..+++.++..+ .+||+.|++.++..++..+. ++++||++
T Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 116 TSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 998877777788899999999999999999999999999988887654 48999999988876666554 45678874
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhh
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYY 375 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (565)
+. +++. . +. +.....+++++|+|.++...+...+.+........
T Consensus 196 ~~---~~~~-----------------~--~~--------------~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~ 239 (413)
T PRK15403 196 KR---GAVP-----------------F--SA--------------KSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVA 239 (413)
T ss_pred cc---cCCC-----------------C--Ch--------------HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 30 0000 0 00 00011356678899888776665554444333222
Q ss_pred hhhhccC-cCCCcHH---HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHh--h-cCCchH-HHHHHH
Q psy17080 376 GLVLNLS-NIGGDVY---LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTL--G-FAPGSF-ITISLA 447 (565)
Q Consensus 376 ~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~--~-~~~~~~-~~~~~~ 447 (565)
..+.... ..+.+.. +.......+.+++..+.+.+.++..+++.......+..++..++. . ..++.+ ...+..
T Consensus 240 ~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~ 319 (413)
T PRK15403 240 VSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGT 319 (413)
T ss_pred hChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 2333333 3344432 222233445555566666655444443332222222222221111 0 122222 234455
Q ss_pred HHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHH
Q psy17080 448 MVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL-WHMQSINIHFPMGLLGVVGVLG 517 (565)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i-~~~~~~~~~~~~~~~~~~~~i~ 517 (565)
++.+++.+...+......-+..+ ..+|++.++.+.....+..+++.. ......+...++...+++..+.
T Consensus 320 ~l~~~G~~~~~p~~~~~al~~~~-~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 320 SLYAFGIGLIFPTLFRFTLFSNN-LPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHHHHHHHHHhHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 56667777776666643322212 236888888887777776666666 2233345556666665554443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.9e-25 Score=226.14 Aligned_cols=361 Identities=12% Similarity=0.098 Sum_probs=230.7
Q ss_pred ccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHHhhh
Q psy17080 146 EWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAIS----PWFELYLVVRFFLGFF 221 (565)
Q Consensus 146 ~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~----~~~~~l~~~r~l~G~~ 221 (565)
++|+ +..+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.++. .+++.+.+.|++.|++
T Consensus 55 ~~g~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~ 131 (438)
T TIGR00712 55 EQGF---SKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWF 131 (438)
T ss_pred HcCC---CHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence 3577 78889999999999999999999999999999999999999999998887764 4677888999999999
Q ss_pred hhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHHH-HHhhhcccchh
Q psy17080 222 CVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYY----SHNWRLLQWVITIPTIFFL-TLWWIMPESPR 296 (565)
Q Consensus 222 ~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~~~Wr~~~~~~~~~~~~~~-~~~~~~pesp~ 296 (565)
.+...+.....+.|++|+++|+++.++.+.+..+|..+++.+... ..+||+.|++.++..++.. +.++++||+|+
T Consensus 132 ~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~ 211 (438)
T TIGR00712 132 QGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQ 211 (438)
T ss_pred hhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 999989889999999999999999999999999998887765432 2489999999888766644 44666788875
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHH-hhh
Q psy17080 297 WLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYL-VYY 375 (565)
Q Consensus 297 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~ 375 (565)
....+...++ + + +.+.+. .+ +.+.+.+.+....+.++|++.++...+...+.+..... ..+
T Consensus 212 ~~~~~~~~~~-~---------~--~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (438)
T TIGR00712 212 SCGLPPIEEY-R---------N--DYPDDY----NE--KAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDW 273 (438)
T ss_pred hcCCCCchhc-c---------c--cccccc----cc--ccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHh
Confidence 3211000000 0 0 000000 00 00000000001112467888877776655554443222 223
Q ss_pred hhhhccCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH--H-HHHHHHhhcCC--chHHHHHHH
Q psy17080 376 GLVLNLSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGA--G-LACLMTLGFAP--GSFITISLA 447 (565)
Q Consensus 376 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~--~-~~~~~~~~~~~--~~~~~~~~~ 447 (565)
...+..+..+.+ ......+.++..+++.++++++.||+++++....+.... . ++.+.+. ..+ +.+......
T Consensus 274 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 352 (438)
T TIGR00712 274 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYW-MNPAGNPLVDMICM 352 (438)
T ss_pred HHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHH-hcCCCchHHHHHHH
Confidence 223322223333 234455667778899999999999996433222222211 1 1112111 211 222222222
Q ss_pred HHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHH-HHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHH-hh
Q psy17080 448 MVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVAL-ILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSV-LL 523 (565)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~-~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~-~~ 523 (565)
+..+++.............|.+|++.|+++.|+.+..+.+|+ +++|.+ ...+..++...+.+.+++.+++.+.. +.
T Consensus 353 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T TIGR00712 353 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 432 (438)
T ss_pred HHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 233332222222223467799999999999999998888775 578887 33466677777777777666665544 56
Q ss_pred cccCC
Q psy17080 524 LPDTT 528 (565)
Q Consensus 524 l~et~ 528 (565)
+||.|
T Consensus 433 ~~~~~ 437 (438)
T TIGR00712 433 MIGEK 437 (438)
T ss_pred Hhhcc
Confidence 67655
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=220.54 Aligned_cols=318 Identities=14% Similarity=0.201 Sum_probs=221.1
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|.+.+++|+ +..+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|
T Consensus 14 ~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g 90 (377)
T PRK11102 14 LPVIAADFGV---SAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHG 90 (377)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 6778889999 8889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHH-hhhcccch
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTL-WWIMPESP 295 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~-~~~~pesp 295 (565)
++.+...+...+++.|++++++|+++.++...+..+|..+++.++..+ .+||+.|++.++..++..+. .+++||++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 91 LAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 999999999999999999999999999999999999999988887654 48999999887776655443 45677754
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhh-
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVY- 374 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 374 (565)
+. +++ .+ .+.. +...+++++++++..+...+...+.........
T Consensus 171 ~~---~~~----------------~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (377)
T PRK11102 171 PK---ERR----------------QP--FHLR--------------TTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLT 215 (377)
T ss_pred cc---ccc----------------CC--CChH--------------HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHH
Confidence 20 000 00 0000 001124456777776655444433332222111
Q ss_pred hhhhhccCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhh--cCC-chHHHHHHHH
Q psy17080 375 YGLVLNLSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLG--FAP-GSFITISLAM 448 (565)
Q Consensus 375 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~ 448 (565)
+...+..+..+.+ ........++..+++.++.+++.||+|||+.+..+..+..+..+.+.. ..+ ..+...+...
T Consensus 216 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (377)
T PRK11102 216 AGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVA 295 (377)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1112222223333 234455666778889999999999999999888777654433222211 112 2222222333
Q ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHH-HHHHHHHHHHH
Q psy17080 449 VGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPA-GVALILIPYLW 496 (565)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~-~lg~~i~p~i~ 496 (565)
+...+.+...+....+..|..| +.++++.++.+... .+|..+++++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 296 AFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred HHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455566778777 67899999876654 46777777663
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-25 Score=223.16 Aligned_cols=312 Identities=19% Similarity=0.179 Sum_probs=211.0
Q ss_pred HHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhH--------HHHHHHHHHhhhhhhhHhhhhhhhcc
Q psy17080 164 FLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFE--------LYLVVRFFLGFFCVSIVFSGFVLCME 235 (565)
Q Consensus 164 ~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~e 235 (565)
.+++..+++++.|+++||+|||++++.+.++..++.++++++++++ .+++.|+++|++.+...+...+++.|
T Consensus 44 ~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~ 123 (394)
T TIGR00883 44 GFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAE 123 (394)
T ss_pred HHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhh
Confidence 3344457999999999999999999999999999999999998875 48899999999999999999999999
Q ss_pred ccccchhHHHHHHhhhhhHHHHHHHHHHHHHh-----------cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCH
Q psy17080 236 LVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS-----------HNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRN 304 (565)
Q Consensus 236 ~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-----------~~Wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~ 304 (565)
++++++|++..++...+..+|.++++.++... .+||+.+++.++..++.......+||+|++...++
T Consensus 124 ~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 201 (394)
T TIGR00883 124 YAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE-- 201 (394)
T ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh--
Confidence 99999999999999999999999888765432 37999999887776666655566777764311100
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHH--HHHHHHHHHHHHHHHHHh-hhhhhhcc
Q psy17080 305 KEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPL--IRLISFVQYIIWFSVYLV-YYGLVLNL 381 (565)
Q Consensus 305 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~ 381 (565)
++++.+.+.++.++++. ++.......+........ .+...+..
T Consensus 202 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (394)
T TIGR00883 202 ----------------------------------KHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLT 247 (394)
T ss_pred ----------------------------------ccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011223444555543 333333333222222222 12222222
Q ss_pred CcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH-HHHhhcC--CchHHHHHHHHHHHHHHH
Q psy17080 382 SNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLAC-LMTLGFA--PGSFITISLAMVGKFAIS 455 (565)
Q Consensus 382 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~ 455 (565)
...+.+ .........+..+++.++.+++.||+|||+.+.....+..+.. ....... .+.+......++.+++.+
T Consensus 248 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 327 (394)
T TIGR00883 248 QTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGG 327 (394)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 223322 2334455667788889999999999999997775554443332 2222121 223444445566677777
Q ss_pred HHHHHHHHhcccccchhhhhhHHHHH-HHHHHHHHHHHHHH--HHHHHhh-hhhHHHHHH
Q psy17080 456 SSNVIIPIYTAELFPTKMRNLGVGAS-SVPAGVALILIPYL--WHMQSIN-IHFPMGLLG 511 (565)
Q Consensus 456 ~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~lg~~i~p~i--~~~~~~~-~~~~~~~~~ 511 (565)
...+...++..|.+|++.|+++.|+. ++...+|+.++|.+ ...+..+ +...++...
T Consensus 328 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~ 387 (394)
T TIGR00883 328 MYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLA 387 (394)
T ss_pred HHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence 77888899999999999999999985 45566788888888 3344445 343333333
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=222.15 Aligned_cols=336 Identities=12% Similarity=0.018 Sum_probs=229.2
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHH---HhcchhHHHHHHHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLV---AISPWFELYLVVRF 216 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~---~~~~~~~~l~~~r~ 216 (565)
.|.+.+++++ +..+.++..+.+.+++.+++++.|+++||+|||+++..+.++++++.+++ .++++++.+++.|+
T Consensus 49 ~p~i~~~~~~---s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~ 125 (438)
T PRK10133 49 LPQFQQAFTL---TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF 125 (438)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6788899999 88999999999999999999999999999999999999999999999875 56899999999999
Q ss_pred HHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh-----------------------------
Q psy17080 217 FLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS----------------------------- 267 (565)
Q Consensus 217 l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----------------------------- 267 (565)
++|+|.+...+....++.|+.++++|...+++.+..+.+|..+++.++..+
T Consensus 126 l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~ 205 (438)
T PRK10133 126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLV 205 (438)
T ss_pred HHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHH
Confidence 999999999999999999987777777778888888888888887665321
Q ss_pred cchhHHHHHHH-HHHHHHHHH-hhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCccc
Q psy17080 268 HNWRLLQWVIT-IPTIFFLTL-WWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKV 345 (565)
Q Consensus 268 ~~Wr~~~~~~~-~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (565)
.+||++|+... +..++.++. ...+||.+. +++ .+.+..+...
T Consensus 206 ~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~--------------------------------~~~~~~~~~~ 249 (438)
T PRK10133 206 LSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNH--------------------------------SDAKQGSFSA 249 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----ccc--------------------------------ccccccchhh
Confidence 24666665433 333222222 223444211 000 0000000112
Q ss_pred chhhccccHHHHHHHHHHHHHHHHHHHhh-hhhhhcc-CcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHH
Q psy17080 346 QVMDLWRTPLIRLISFVQYIIWFSVYLVY-YGLVLNL-SNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLC 420 (565)
Q Consensus 346 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~ 420 (565)
+.++++++|.++...+..++........+ |...+.. +..+.+. ........++.+++.++++++.||+|+|+++.
T Consensus 250 ~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~ 329 (438)
T PRK10133 250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLA 329 (438)
T ss_pred hHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 34567888887765554443333322222 2222222 2334443 34456667788899999999999999999988
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH-H-HH
Q psy17080 421 LTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL-W-HM 498 (565)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i-~-~~ 498 (565)
.+.++.++.+++.. +.++. .......+.+++.+..+|..++...+..|++ .+.+.++..+ ..+|+.++|.+ . ..
T Consensus 330 ~~~~~~~~~~~~~~-~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~ 405 (438)
T PRK10133 330 AYALIAMALCLISA-FAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVS 405 (438)
T ss_pred HHHHHHHHHHHHHH-HcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHH
Confidence 88777666655554 43433 2344566788999999999999999998864 5677777754 44566666655 2 23
Q ss_pred HHhh-hhhHHHHHHHHHHHHH
Q psy17080 499 QSIN-IHFPMGLLGVVGVLGG 518 (565)
Q Consensus 499 ~~~~-~~~~~~~~~~~~~i~~ 518 (565)
+..+ ....+++..++.+...
T Consensus 406 ~~~g~~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 406 DAAGNIPTAELIPALCFAVIF 426 (438)
T ss_pred HhccchHHHHHHHHHHHHHHH
Confidence 4444 4555655444444333
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=220.20 Aligned_cols=312 Identities=14% Similarity=0.121 Sum_probs=213.2
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|.+.+++++ +..+.++..+.+.++..+++++.|+++||+|||++++.+.++.+++.+++.++++++.+++.|+++|
T Consensus 26 lp~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g 102 (392)
T PRK10473 26 LPRIAADLNA---SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQG 102 (392)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 6788899998 8888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHH-hhhcccch
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTL-WWIMPESP 295 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~-~~~~pesp 295 (565)
++.+...+...+++.|++++++|+++.++.+....+|.++++.++..+ .+||+.+++.++..++..+. .+++||++
T Consensus 103 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 103 IGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred hhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999998889988888887654 48999999887766555443 45667763
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHH-Hhh
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVY-LVY 374 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~ 374 (565)
+. +.+ + + . ......++.++++.++...+...+.+.... ...
T Consensus 183 ~~---~~~--~--------------~--~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (392)
T PRK10473 183 PA---RAP--A--------------A--S-----------------SKPRENSESLLNRFFLSRLVITTLSVTVILTFVN 224 (392)
T ss_pred Cc---ccC--C--------------c--c-----------------chHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 000 0 0 0 000112344566665544443333222211 111
Q ss_pred hhhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q psy17080 375 YGLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGK 451 (565)
Q Consensus 375 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (565)
+...+.....+.+. .......++..+++.++.+++.||+|||+.+..+..+..++.+.+. +.+..+.......+..
T Consensus 225 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~ 303 (392)
T PRK10473 225 TSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLA-LSPSHAVSLFGITLIC 303 (392)
T ss_pred hCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 11112222333332 2344456677888999999999999999998888877777666655 3333333333333333
Q ss_pred HHHHHHHHHHHHhcccccchhhh-hhHHHHHHHHHHHHHHHHHHH
Q psy17080 452 FAISSSNVIIPIYTAELFPTKMR-NLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 452 ~~~~~~~~~~~~~~~e~~p~~~r-~~~~g~~~~~~~lg~~i~p~i 495 (565)
.+.+..++.. ...++.|.+.| +.+.++..+...+|+.+++.+
T Consensus 304 ~g~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l 346 (392)
T PRK10473 304 AGFSVGFGVA--MSQALGPFSLRAGVASSTLGIAQVCGSSLWIWL 346 (392)
T ss_pred HHHHHHhHHH--HHHHhccCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333 33444454443 444444454555555555555
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=220.46 Aligned_cols=335 Identities=12% Similarity=0.081 Sum_probs=229.5
Q ss_pred eeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhh
Q psy17080 143 IISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFC 222 (565)
Q Consensus 143 i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 222 (565)
+.+++++ +..+.|++.+.+.++..+.+++.|+++||+|||++++.+.++.+++.+++.++++++.+++.|++.|++.
T Consensus 37 ~~~~~g~---s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~ 113 (400)
T PRK11646 37 FVDQLGW---AAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGG 113 (400)
T ss_pred HHHHhCC---cHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4567888 8889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHH-hhhcccchhHHH
Q psy17080 223 VSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS--HNWRLLQWVITIPTIFFLTL-WWIMPESPRWLV 299 (565)
Q Consensus 223 ~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~--~~Wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~ 299 (565)
+...+...+++.|++|+++|+++.++......+|..+++.++..+ .+||+.|++.++..++..+. .+++||.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~--- 190 (400)
T PRK11646 114 TLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAYKL--- 190 (400)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcccc---
Confidence 888899999999999999999999999998889888888777654 48999999887765554433 444555210
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy17080 300 SMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVL 379 (565)
Q Consensus 300 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (565)
.+. .+ +.+.++++++++|.++...+.....+..........+.
T Consensus 191 --~~~------------------~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 233 (400)
T PRK11646 191 --STV------------------RT-----------------PVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPI 233 (400)
T ss_pred --ccc------------------ch-----------------hhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 000 00 00112445667776654433332222221111122333
Q ss_pred ccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHH-hhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q psy17080 380 NLSNIGGDV---YLNTIISGIVEFPAIVISIFIL-LKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAIS 455 (565)
Q Consensus 380 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~-dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (565)
+.++.+.+. .....+.++..+.+....+.+. ||++.++.+..+.++.+++.+++. ..++.+...+..++.+.+.+
T Consensus 234 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~l~~~g~~ 312 (400)
T PRK11646 234 MVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIG-MVSNLQQLFTLICLFYIGSI 312 (400)
T ss_pred hHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHH
Confidence 333332222 2222333344443333334444 556666666666666666665554 44444444444455566666
Q ss_pred HHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHh---h-hhhHHHHHHHHHHHHHHHH
Q psy17080 456 SSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSI---N-IHFPMGLLGVVGVLGGLSV 521 (565)
Q Consensus 456 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~---~-~~~~~~~~~~~~~i~~~~~ 521 (565)
...+...++..+..|++.|+++.|+.+....+|..++|.+ ...+.. + ...++++.+++.+++.+..
T Consensus 313 ~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (400)
T PRK11646 313 IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLAL 384 (400)
T ss_pred HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHH
Confidence 6677788999999999999999999999999999999988 333332 1 3455555555555554443
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=226.87 Aligned_cols=330 Identities=18% Similarity=0.200 Sum_probs=241.6
Q ss_pred eeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhh
Q psy17080 143 IISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFC 222 (565)
Q Consensus 143 i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 222 (565)
+.+|.++ ...+.+.+.++|+++++++.+++|.+.||++-.+.+....+.+++.+++....+|++.+++.|++.|+.+
T Consensus 72 ~~edl~~---~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~e 148 (495)
T KOG2533|consen 72 LKEDLKL---VGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFE 148 (495)
T ss_pred Cccccch---hhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4456666 6677899999999999999999999999999999999999999999988888999999999999999999
Q ss_pred hhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---------cchhHHHHHHHHHHHHHHHH-hhhcc
Q psy17080 223 VSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---------HNWRLLQWVITIPTIFFLTL-WWIMP 292 (565)
Q Consensus 223 ~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---------~~Wr~~~~~~~~~~~~~~~~-~~~~p 292 (565)
+..+|....++..|+.+++|++.++++.+...+|.++++++++.+ .||||.|++.+++.++..++ ++++|
T Consensus 149 s~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 149 SGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred cccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence 999999999999999999999999999999999999999998872 48999999998887776654 67789
Q ss_pred cchh--HHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHH
Q psy17080 293 ESPR--WLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSV 370 (565)
Q Consensus 293 esp~--~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 370 (565)
+.|. |...+.+.+-+ .++.++.+ .+...++.+...+++.+++|..+...+..++.....
T Consensus 229 ~~P~~~~fl~~~ek~~~---~~~~~~~~----------------~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~ 289 (495)
T KOG2533|consen 229 DNPSKAWFLTDEEKELV---VERLRESP----------------SGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVN 289 (495)
T ss_pred CChhhccccchHHHHHH---HHHHHhcc----------------CCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhcc
Confidence 9986 32222111111 11111111 111111145567889999999999999999888887
Q ss_pred HHhhhhhhhccCc-CCC---cHHHHHHHHHHHHHHHHHHHHHHHhh----cCChHHHHHHHHHHHHHH-HHHhhcCCchH
Q psy17080 371 YLVYYGLVLNLSN-IGG---DVYLNTIISGIVEFPAIVISIFILLK----MGRRRPLCLTTLGAGLAC-LMTLGFAPGSF 441 (565)
Q Consensus 371 ~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~l~dr----~grr~~l~~~~~~~~~~~-~~~~~~~~~~~ 441 (565)
+...+..++++.+ .+. +.........++++++.+++++++|| ..+|......+.+..+.. ..+. ......
T Consensus 290 ~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~-~~~~~~ 368 (495)
T KOG2533|consen 290 YGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLL-AAAVLP 368 (495)
T ss_pred ccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-hhccch
Confidence 7555555555554 222 23344566778899999999999999 556665555555544433 3333 333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHH-HHHHHHHHHHHHHHHHH
Q psy17080 442 ITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGV-GASSVPAGVALILIPYL 495 (565)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~-g~~~~~~~lg~~i~p~i 495 (565)
......+.+.++.....+.....+++....+.|.... +........+++++|.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~ 423 (495)
T KOG2533|consen 369 GAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQL 423 (495)
T ss_pred HHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhh
Confidence 4444445555556666677777777777665544444 44455566777777777
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=221.34 Aligned_cols=346 Identities=11% Similarity=0.045 Sum_probs=228.5
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccc-hhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGR-KKALMGSLVFQLVLGVLVAISPWFELYLVVRFFL 218 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Gr-r~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~ 218 (565)
.+.+.+++++ +..++|++.+++.++.+++++++|.++||+|| |+++.++.++.+++..+..+.++++.+++.|++.
T Consensus 26 ~~~l~~~~g~---s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (418)
T TIGR00889 26 GSYMSKTLHF---SGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLAN 102 (418)
T ss_pred HHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3445667888 88999999999999999999999999999965 7788888888888888888999999999999999
Q ss_pred hhhhhhhHhhhhhhhc--------cccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHH
Q psy17080 219 GFFCVSIVFSGFVLCM--------ELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTL 287 (565)
Q Consensus 219 G~~~~~~~~~~~~~i~--------e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~ 287 (565)
|++.+...+...++.. |......|.+..+ .+|.++++.++..+ .+|+. |++.++..++..+.
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~~-f~~~~~~~~~~~~~ 175 (418)
T TIGR00889 103 SLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNIQ-LYITAGSSALLGVF 175 (418)
T ss_pred HHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHHHHH
Confidence 9987777666554432 2233233444433 24444444444433 23443 45555555555555
Q ss_pred hhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHH
Q psy17080 288 WWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIW 367 (565)
Q Consensus 288 ~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 367 (565)
.+++||+|+- +++.++ +. ++..+.+.++++|+|.++..++..++..
T Consensus 176 ~~~~~e~~~~---~~~~~~------------------~~-------------~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 221 (418)
T TIGR00889 176 ALTLPDIPVA---KSTAKM------------------SI-------------KVMLGLDAFILFKNKRMAIFFFFSMLLG 221 (418)
T ss_pred HhcCCCCCCC---cccccc------------------CH-------------HHHhhhhHHHHhcCCCeeeHHHHHHHHH
Confidence 6678887530 000000 00 0000112345677777666555555544
Q ss_pred HHHHHhhhhhhhccCcCC-----------CcHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhc
Q psy17080 368 FSVYLVYYGLVLNLSNIG-----------GDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF 436 (565)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~ 436 (565)
......+...+.+..+.+ ........+..+.++++.+..+++.||+|||+.+..+.++.+++..++...
T Consensus 222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~ 301 (418)
T TIGR00889 222 APLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG 301 (418)
T ss_pred hHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 333222211122222222 122445556667888899999999999999999999998888776666522
Q ss_pred CCch---HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHH-HHHHHHHHHHHHH--HHHHH------hhhh
Q psy17080 437 APGS---FITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASS-VPAGVALILIPYL--WHMQS------INIH 504 (565)
Q Consensus 437 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~lg~~i~p~i--~~~~~------~~~~ 504 (565)
.... +...+..++.+++.+...+....++.|.+|++.|+++.|+.+ +...+|.+++|.+ ...+. .+|.
T Consensus 302 ~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 302 DPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 2211 233444566677777777788889999999999999999997 5678899999988 33344 2466
Q ss_pred hHHHHHHHHHHHHHHH-HhhcccCCC
Q psy17080 505 FPMGLLGVVGVLGGLS-VLLLPDTTG 529 (565)
Q Consensus 505 ~~~~~~~~~~~i~~~~-~~~l~et~~ 529 (565)
..|.+.+++.++++++ .++++|+++
T Consensus 382 ~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 7787777777666554 467788776
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-24 Score=218.14 Aligned_cols=333 Identities=11% Similarity=-0.006 Sum_probs=236.0
Q ss_pred ceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhh
Q psy17080 142 TIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFF 221 (565)
Q Consensus 142 ~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~ 221 (565)
.+.+++|+ +..+.|++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.+++++++.+++.|++.|.+
T Consensus 33 ~l~~~~g~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 109 (395)
T PRK10054 33 YLSRQYSL---SVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCA 109 (395)
T ss_pred HHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34567898 889999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHH-hhhcccchhHH
Q psy17080 222 CVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS--HNWRLLQWVITIPTIFFLTL-WWIMPESPRWL 298 (565)
Q Consensus 222 ~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~--~~Wr~~~~~~~~~~~~~~~~-~~~~pesp~~l 298 (565)
.+...+...++..|..++++|+++.++.....++|.++++.++..+ .+|+..|++.++..++.++. .+++||+++-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~- 188 (395)
T PRK10054 110 YSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSEKA- 188 (395)
T ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccccc-
Confidence 8888888899999999999999999999999999999988887664 48999999887776665443 3445554210
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy17080 299 VSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLV 378 (565)
Q Consensus 299 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (565)
++ ++. ++..+.++++|+|.++...+..++..+..........
T Consensus 189 ---~~-~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 230 (395)
T PRK10054 189 ---IA-TET----------------------------------GSVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCIS 230 (395)
T ss_pred ---cc-cch----------------------------------hhhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHH
Confidence 00 000 0001124567777776666554443333221111111
Q ss_pred hc---cCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCC-chHHHHHHHHHHH
Q psy17080 379 LN---LSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAP-GSFITISLAMVGK 451 (565)
Q Consensus 379 ~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 451 (565)
.+ ..+.+.+. .......++..++.....+.+.||.++|+.+..+..+.+++...+. +.. +.+...+...+.+
T Consensus 231 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 309 (395)
T PRK10054 231 QYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFI-FSGNSLLLWGMSAAVFT 309 (395)
T ss_pred HHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHH-HcchHHHHHHHHHHHHH
Confidence 11 12222222 2233333444455567778999999999998888877777766555 332 3344445566667
Q ss_pred HHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHH
Q psy17080 452 FAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGG 518 (565)
Q Consensus 452 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~ 518 (565)
++.....+....++.+..|++.|+++.+..+ ...+|..++|.+ ...+..++...+.+.+++..++.
T Consensus 310 ~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~ 377 (395)
T PRK10054 310 VGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAW 377 (395)
T ss_pred HHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHH
Confidence 7776666777888999999999999988765 566899999988 44566666666666555444433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-24 Score=216.69 Aligned_cols=310 Identities=13% Similarity=0.037 Sum_probs=224.8
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHh---cchhHHHHHHHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAI---SPWFELYLVVRF 216 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~---~~~~~~l~~~r~ 216 (565)
.|.+++++++ +..+.|++.+.+.+++.+++++.|++.||+|||++++.+.++++++.++... .++++.+++.|+
T Consensus 26 ~~~~~~~~~~---s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~ 102 (410)
T TIGR00885 26 VPQFQQAFTL---TAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLF 102 (410)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 6788899999 8889999999999999999999999999999999999999999999888644 468999999999
Q ss_pred HHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh-----------------------------
Q psy17080 217 FLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS----------------------------- 267 (565)
Q Consensus 217 l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----------------------------- 267 (565)
+.|+|.+...+....++.+..|+++|++..++.+....+|..+++.++..+
T Consensus 103 l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (410)
T TIGR00885 103 ILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDL 182 (410)
T ss_pred HHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988888888888776533
Q ss_pred cchhHHHHHHHHHHHHHHHHhhh--cccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCccc
Q psy17080 268 HNWRLLQWVITIPTIFFLTLWWI--MPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKV 345 (565)
Q Consensus 268 ~~Wr~~~~~~~~~~~~~~~~~~~--~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (565)
.+||++|++.+++.++..+...+ .||.++ ++ +++.....
T Consensus 183 ~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~--------~~-------------------------------~~~~~~~~ 223 (410)
T TIGR00885 183 ASVQTPYMIIGAVVLAVALLIMLTKMPALNH--------SD-------------------------------AKQISFSA 223 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--------cc-------------------------------cccccchh
Confidence 25999999888776655444433 333210 00 00000111
Q ss_pred chhhccccHHHHHHHHHHHHHHHHHHHhhhhhhhccCcC--CCcHH---HHHHHHHHHHHHHHHHHHHHHhhcCChHHHH
Q psy17080 346 QVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNI--GGDVY---LNTIISGIVEFPAIVISIFILLKMGRRRPLC 420 (565)
Q Consensus 346 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~ 420 (565)
+.++++|+|.++...+..++........+..+..+..+. +.+.. ...........+|+++++++.||+++|+.+.
T Consensus 224 ~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~ 303 (410)
T TIGR00885 224 SLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLM 303 (410)
T ss_pred hHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 334567788777655554443333322222222222211 11111 1122233556789999999999999999988
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 421 LTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
+..++.++.+++.. +.++.. ......+.+++.+..+|..++...+..+++.+..+.++.... +|+.+.|.+
T Consensus 304 i~~~~~~~~~ll~~-~~~~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l 374 (410)
T TIGR00885 304 AYAIIGMALCLGSI-FAGGHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPL 374 (410)
T ss_pred HHHHHHHHHHHHHH-HcCChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHH
Confidence 88888887777776 444433 345556677888888999999999999987654455554433 888888888
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=211.97 Aligned_cols=339 Identities=16% Similarity=0.171 Sum_probs=218.7
Q ss_pred ceeeccccccCcchhhHHHHHHH-HHHHhhhhhhhhcccccccchhhH-HHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 142 TIISEWDLVCSNSSLESLAEMVF-LLGVAFGGFFSGLVSDKFGRKKAL-MGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 142 ~i~~~~~l~c~~~~~~~l~~s~~-~lg~~ig~~~~G~l~Dr~Grr~~l-~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.+.+|+++ +..+.|++.+.. ..++.++.++.|+ +||+|||+.+ +.+.++.+++.++.+++++++.+++.+.+.|
T Consensus 41 ~l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 116 (393)
T PRK15011 41 FLTDEVHA---RPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLS 116 (393)
T ss_pred HHHhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35678898 888899997765 4566667766666 9999999875 5566666778888889999998877666555
Q ss_pred hhhhhhHhhhhhhhccccccchh--HHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHH-hhhccc
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWL--TIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTL-WWIMPE 293 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~-~~~~pe 293 (565)
...+...+....++.|+.+++.| +...+..+.+.++|.++++.++..+ .|||..|++.++..++..+. ++++||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~ 196 (393)
T PRK15011 117 SFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPS 196 (393)
T ss_pred HHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 55567788888888888876655 3456788888889999998888765 39999999988776655544 455787
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHh
Q psy17080 294 SPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLV 373 (565)
Q Consensus 294 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 373 (565)
.++- +++ + + ++. ...++ +.+..+.........+......
T Consensus 197 ~~~~---~~~--~----------------~------------~~~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 235 (393)
T PRK15011 197 MRKE---LPL--A----------------T------------GTL------EAPRR--NRRDTLLLFVICTLMWGTNSLY 235 (393)
T ss_pred cCCC---Ccc--c----------------c------------ccc------ccccc--ccccHHHHHHHHHHHHHHHHHH
Confidence 6420 000 0 0 000 00000 0111222222222233222222
Q ss_pred hhhhhhcc-CcCCCcHH---HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q psy17080 374 YYGLVLNL-SNIGGDVY---LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMV 449 (565)
Q Consensus 374 ~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (565)
....+.+. +.++.+.. .......+..+++.++.+++.||++||+.+..+.....+.+.... ...+.+...+..++
T Consensus 236 ~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l 314 (393)
T PRK15011 236 IINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGML-MAHSPAILLGLQLL 314 (393)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHH
Confidence 22222222 23333322 223334455677889999999999999987766555544443333 33333444444445
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhcccC
Q psy17080 450 GKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLLPDT 527 (565)
Q Consensus 450 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~et 527 (565)
.++..+...+....+..|.+|++ |+++.++.+....+|..++|.+ ...+..++...+.+.+++.+++.+..+.+||+
T Consensus 315 ~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (393)
T PRK15011 315 NAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKDV 393 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 55555555566667788999864 8999999988889999999988 33455678788888888888877777777764
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=213.62 Aligned_cols=314 Identities=11% Similarity=0.010 Sum_probs=217.1
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|.+.+++++ +..+.+++.+++.+++.+++++.|+++||+|||++++.+.++..++.+++.++++++.+++.|++.|
T Consensus 31 ~~~i~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 107 (394)
T PRK11652 31 IADMARDLNV---REGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQG 107 (394)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5778889999 8889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHH-HHhhhcccch
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFL-TLWWIMPESP 295 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~-~~~~~~pesp 295 (565)
++.+...+....+..|.+++++|+++.+....+..+|..+++.++..+ .+||+.|++.++..++.. +..+++||++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 108 LGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred hhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 998888888888899999999999999999999999998888877654 489999998877655443 3355678764
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhh
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYY 375 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (565)
+.. .+.++ ....+++.+++|.++...+..............
T Consensus 188 ~~~---~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (394)
T PRK11652 188 PAD---ARRTR------------------------------------VLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEA 228 (394)
T ss_pred ccc---cchhH------------------------------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHH
Confidence 310 00000 011244566777766554433332222221111
Q ss_pred hhh-hccCcCCCcHH---HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhc--CCchHHHHHHHHH
Q psy17080 376 GLV-LNLSNIGGDVY---LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF--APGSFITISLAMV 449 (565)
Q Consensus 376 ~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 449 (565)
... +..+..+.+.. .......++.+++.++.+++.||.+++........+.+......... ..+.+......++
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (394)
T PRK11652 229 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAAL 308 (394)
T ss_pred hChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 111 11122333332 22233344555666667777777763332222222222122111111 1233445555666
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy17080 450 GKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLW 496 (565)
Q Consensus 450 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~ 496 (565)
.+++.+...+....+..|.+| +.++++.++.+....+|+.+++.+.
T Consensus 309 ~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~ 354 (394)
T PRK11652 309 FFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLS 354 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888889888 4679999999999999999999873
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=211.84 Aligned_cols=338 Identities=10% Similarity=-0.002 Sum_probs=242.1
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHH-HHHHHH-HHHHhcchhHHHHHHHHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLV-FQLVLG-VLVAISPWFELYLVVRFF 217 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~-l~~~~~-~~~~~~~~~~~l~~~r~l 217 (565)
.|.+.+|+++ +..++|++.+++.++..++++++|+++||+|||........ ...+.. ..+.++++++.+++.|++
T Consensus 27 l~~~l~~~g~---s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l 103 (382)
T TIGR00902 27 FPAWLKGIGL---GEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGL 103 (382)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5677888999 89999999999999999999999999999998543322211 111222 244567899999999999
Q ss_pred HhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhcccc
Q psy17080 218 LGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIMPES 294 (565)
Q Consensus 218 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~pes 294 (565)
+|.+.+...+...++..++ .++|++..+....+.++|.++++.++..+ .|||..|++..+..++.++ .+.++|+
T Consensus 104 ~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~ 180 (382)
T TIGR00902 104 FALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPT 180 (382)
T ss_pred HHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCC
Confidence 9999888888888887665 46788888888888889999988876654 4899998886655333333 3333433
Q ss_pred h-hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHh
Q psy17080 295 P-RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLV 373 (565)
Q Consensus 295 p-~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 373 (565)
+ +. ++ + ++++.+...+.++++|+|+++...+..++.+......
T Consensus 181 ~~~~----~~-~-------------------------------~~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~ 224 (382)
T TIGR00902 181 IPPK----DA-I-------------------------------PEDESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAY 224 (382)
T ss_pred CCCC----cc-c-------------------------------cccccccchhHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 1 10 00 0 0000011223567889999888877766666554444
Q ss_pred hhhhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q psy17080 374 YYGLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVG 450 (565)
Q Consensus 374 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (565)
+...+.+.++.+.+. .....+..+.++++.++.+++.||+|+|+.+.++.+..++..+++. +.++.+..+...++.
T Consensus 225 ~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~q~l~ 303 (382)
T TIGR00902 225 YGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG-AIEAFPLIFLLQILH 303 (382)
T ss_pred HHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH-hHhhHHHHHHHHHHH
Confidence 333344444555443 3344456677888899999999999999999999999988887776 666667777778888
Q ss_pred HHHHHHHHHHHHHhcccccchhhhhhHHHHHH-HHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHh
Q psy17080 451 KFAISSSNVIIPIYTAELFPTKMRNLGVGASS-VPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVL 522 (565)
Q Consensus 451 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~ 522 (565)
++..+...+....++.+. |++.|+++.++.+ +...+|..++|.+ ...+..+. ..|.+.+++++++.++..
T Consensus 304 g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~~ 376 (382)
T TIGR00902 304 CGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLIP 376 (382)
T ss_pred HHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 9999999999986 4567888888888 34455554 557777777766654433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=216.84 Aligned_cols=348 Identities=10% Similarity=0.089 Sum_probs=233.9
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccc-----cchhh-HHHHHHHHHHHHHHHHhc---chhHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKF-----GRKKA-LMGSLVFQLVLGVLVAIS---PWFEL 210 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~-----Grr~~-l~~~~~l~~~~~~~~~~~---~~~~~ 210 (565)
.+...++.|. +..+++.. +.....+ ++.+++|+++||+ |||+. ++.+.++.+++.+++++. ++++.
T Consensus 35 l~~~l~~~g~---~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~ 109 (491)
T PRK11010 35 LQAWMTVENI---DLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRW 109 (491)
T ss_pred HHHHHHhCCC---CHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHH
Confidence 3445555666 66666765 4444444 6889999999999 99985 667777777777777775 47888
Q ss_pred HHHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHH
Q psy17080 211 YLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS----HNWRLLQWVITIPTIFFLT 286 (565)
Q Consensus 211 l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~~Wr~~~~~~~~~~~~~~~ 286 (565)
+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ .+||..|++.++..++..+
T Consensus 110 l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l 189 (491)
T PRK11010 110 LAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCII 189 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988776543 3799999998887777666
Q ss_pred HhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHH
Q psy17080 287 LWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYII 366 (565)
Q Consensus 287 ~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 366 (565)
..+++||+++.. .+.++. + +....+++++++++..+...+..++.
T Consensus 190 ~~~~~~e~~~~~---~~~~~~-----------------------~---------~~~~~~l~~~~~~~~~~~~ll~~~l~ 234 (491)
T PRK11010 190 ATLLAPEPTDTI---PVPKTL-----------------------E---------QAVVAPLRDFFGRNNAWLILLLIVLY 234 (491)
T ss_pred HHHhcCCCcccc---ccccch-----------------------h---------hhHHHHHHHHHcCcCHHHHHHHHHHH
Confidence 666678875310 000000 0 00011244556666555444433333
Q ss_pred HHHHHHhh-hhhhhccCcCCCcHHH---HH-HHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHh--hcC-C
Q psy17080 367 WFSVYLVY-YGLVLNLSNIGGDVYL---NT-IISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTL--GFA-P 438 (565)
Q Consensus 367 ~~~~~~~~-~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~--~~~-~ 438 (565)
.......+ +..++..+..+.+... .. ....++.+++.++++++.||+|+|+.+.++.++.++..+.+. ... +
T Consensus 235 ~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~ 314 (491)
T PRK11010 235 KLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDK 314 (491)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22222222 2223323334444332 22 233457789999999999999998877766655444333221 122 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHH
Q psy17080 439 GSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVL 516 (565)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i 516 (565)
+.+......++..+..+...+..+++..++.|++.+++..|+.+....+|..+++.+ ...+..++...|.+.++++++
T Consensus 315 ~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~ 394 (491)
T PRK11010 315 NLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVP 394 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 222333334444444555556667888888898889999999999989988766555 445667888888888888888
Q ss_pred HHHHHhhcccC
Q psy17080 517 GGLSVLLLPDT 527 (565)
Q Consensus 517 ~~~~~~~l~et 527 (565)
+.++...++++
T Consensus 395 ~l~~~~~~~~~ 405 (491)
T PRK11010 395 GLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHhc
Confidence 87777766665
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=219.48 Aligned_cols=318 Identities=13% Similarity=0.071 Sum_probs=211.3
Q ss_pred cc-ceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHH
Q psy17080 140 GH-TIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISP-WFELYLVVRFF 217 (565)
Q Consensus 140 ~~-~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l 217 (565)
.| .+.+++|+ +..+.+++.+++.+++++++++.|+++||+|||++++.+.++.+++.+++++++ +++.+++.|++
T Consensus 24 ~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T TIGR00886 24 AVQMIKDDLGL---STAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLF 100 (366)
T ss_pred hhHHHHHHhCC---CHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 56 38889999 888999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHH----HH---------hcchhHHHH-HHHHHH-H
Q psy17080 218 LGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIA----YY---------SHNWRLLQW-VITIPT-I 282 (565)
Q Consensus 218 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~----~~---------~~~Wr~~~~-~~~~~~-~ 282 (565)
+|++.+ ..+....++.|++|+++|+++.++......+|..+++.++ .. ..+||+.++ ..++.. +
T Consensus 101 ~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 179 (366)
T TIGR00886 101 IGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLL 179 (366)
T ss_pred HHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHH
Confidence 999955 4566788999999999999999998865555555554443 22 127999984 434443 3
Q ss_pred HHHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHH
Q psy17080 283 FFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFV 362 (565)
Q Consensus 283 ~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 362 (565)
..++...+.+|+|+. +.++.+. +...... ..+++.....++++++|.++...+.
T Consensus 180 ~~~~~~~~~~~~~~~-----~~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (366)
T TIGR00886 180 PALLIFFVGADTPPG-----KPATGKL--------SFKGARW-------------SVGTGALGDQLKVFRDRHTWILALL 233 (366)
T ss_pred HHHHHHHhcccCCcc-----cccchhc--------ccccccc-------------cccchhHHHHHHHHhccchhhHHHH
Confidence 333444556776531 0000000 0000000 0000001134556777776665555
Q ss_pred HHHHHHHHHHhhhhhhhcc-CcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCC
Q psy17080 363 QYIIWFSVYLVYYGLVLNL-SNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAP 438 (565)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~ 438 (565)
..+.+..........+.+. +..+.+. .....+..+..+++.++.+++.||+|||+.+..+......+..++.....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~ 313 (366)
T TIGR00886 234 YSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLV 313 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCC
Confidence 4444333222222222222 2233332 33344556677888999999999999988777766655555544442222
Q ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHH
Q psy17080 439 ---GSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVA 488 (565)
Q Consensus 439 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg 488 (565)
+.+.......+..++.+...+..+....++.| +.++++.|+.+..+++|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 314 SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred CcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 22333344445556666666777888888887 57899999998887765
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-23 Score=208.95 Aligned_cols=310 Identities=13% Similarity=0.077 Sum_probs=219.5
Q ss_pred cccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q psy17080 139 FGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFL 218 (565)
Q Consensus 139 ~~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~ 218 (565)
..|.+.+|+++ +..+.+++.+++.+++.+++++.|+++||+|||+++..+.++..++.+.+ .+++++.+++.|++.
T Consensus 22 ~lp~l~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 97 (355)
T TIGR00896 22 LLPQIRSALGM---SFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALI 97 (355)
T ss_pred cHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHH
Confidence 37889999999 88899999999999999999999999999999999999999888888877 778999999999999
Q ss_pred hhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh-----cchhHHHHHHHHHHHHHHHHhhhccc
Q psy17080 219 GFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS-----HNWRLLQWVITIPTIFFLTLWWIMPE 293 (565)
Q Consensus 219 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-----~~Wr~~~~~~~~~~~~~~~~~~~~pe 293 (565)
|++.+...+....++.|+++ ++|+++.++...+..+|..+++.++..+ .+||+.|.+.++..++... .++||
T Consensus 98 g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~~~~ 174 (355)
T TIGR00896 98 GVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AWIPQ 174 (355)
T ss_pred HHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHhhh
Confidence 99999888888888889885 6899999999998888888887765543 2399988876655433322 23444
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHh
Q psy17080 294 SPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLV 373 (565)
Q Consensus 294 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 373 (565)
.++ +. +.+++..+...++++|+|.++...+...+........
T Consensus 175 ~~~------~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (355)
T TIGR00896 175 VRR------RV--------------------------------AANQTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSL 216 (355)
T ss_pred hcc------cc--------------------------------CCCCCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHH
Confidence 321 00 0000001123456778887766555444333332222
Q ss_pred hhhhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q psy17080 374 YYGLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKM-GRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMV 449 (565)
Q Consensus 374 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~-grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (565)
....+.+.++.+.+. .......+++.+++.++.+++.||+ +||+.+.++..+.+++.+.+. +.+...... ...+
T Consensus 217 ~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~l 294 (355)
T TIGR00896 217 IGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLL-FAPMHGLWA-WALV 294 (355)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH-HhhhhHHHH-HHHH
Confidence 222233333344333 3445566778889999999999999 566666666666666665555 433332222 3456
Q ss_pred HHHHHHHHHHHHHHhccccc-chhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 450 GKFAISSSNVIIPIYTAELF-PTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 450 ~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
.+++.+..++...+...+.. +++.++...++.+..+.++.+++|.+
T Consensus 295 ~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~ 341 (355)
T TIGR00896 295 LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLF 341 (355)
T ss_pred HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777666655444 45677888999998899999999987
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=201.20 Aligned_cols=341 Identities=15% Similarity=0.132 Sum_probs=253.0
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchh---HHHHHHHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWF---ELYLVVRF 216 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~---~~l~~~r~ 216 (565)
.+.|.+||++ ++.|.+++.++..+...+..++.|.+.||||.|++..+++++..+-.+..+++.++ +.+++.++
T Consensus 37 ~~~i~~~~~L---S~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gl 113 (417)
T COG2223 37 GVFIKSDFGL---SEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGL 113 (417)
T ss_pred HhhhccccCC---CHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHH
Confidence 5677799999 99999999999999999999999999999999999999999999999999998554 49999999
Q ss_pred HHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHH----HHHHHHHhc--chhHHHHHHHHHHHHHHHH-hh
Q psy17080 217 FLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIA----ISGIAYYSH--NWRLLQWVITIPTIFFLTL-WW 289 (565)
Q Consensus 217 l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~----~~~l~~~~~--~Wr~~~~~~~~~~~~~~~~-~~ 289 (565)
+.|++ |+.+.+...++++|+||+++|.++++.. ..++|..+ +|.+..... .||....+..++.++..+. ++
T Consensus 114 l~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~ 191 (417)
T COG2223 114 LLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWL 191 (417)
T ss_pred HHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 7888999999999999999999999998 55666655 555555543 2999888877776665444 55
Q ss_pred hcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHH
Q psy17080 290 IMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFS 369 (565)
Q Consensus 290 ~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 369 (565)
...|.|...... ++.....++.++++++.|.+.+.+...+..
T Consensus 192 ~~~d~p~~r~~~--------------------------------------~~~~~~~~~~v~~~~~~W~lsllY~~tFG~ 233 (417)
T COG2223 192 GMNDVPEHRASV--------------------------------------KPQLPAQLKAVFSNKDTWLLSLLYFATFGG 233 (417)
T ss_pred HhCCChhhhccc--------------------------------------cccchhHHHHHhcCcchHHHHHHHHHHHHH
Confidence 555554320000 000003456678888888887776655543
Q ss_pred H-HHhhhhhhhccCcCCCcHH---HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcC------Cc
Q psy17080 370 V-YLVYYGLVLNLSNIGGDVY---LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFA------PG 439 (565)
Q Consensus 370 ~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~------~~ 439 (565)
. .+..+...+...+++.+.. .......+...+.+.++|+++||+|.++++.+.+..++++..+..... ++
T Consensus 234 Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~ 313 (417)
T COG2223 234 FVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGS 313 (417)
T ss_pred HHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcc
Confidence 2 2223333344444554432 334445556667788999999999999999999988888888777343 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhh-hhhHHHHHHHHHHH
Q psy17080 440 SFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSIN-IHFPMGLLGVVGVL 516 (565)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~-~~~~~~~~~~~~~i 516 (565)
.+......+...+..+......+-++..++|. ..|.+.|+...++.+|++.-|.. ...+..+ +...|+++..+.++
T Consensus 314 ~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~ 392 (417)
T COG2223 314 FVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLV 392 (417)
T ss_pred hHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 24444445556677777777788888888886 45888999999999999999988 3334444 67778888888888
Q ss_pred HHHHHhhc
Q psy17080 517 GGLSVLLL 524 (565)
Q Consensus 517 ~~~~~~~l 524 (565)
+.+....+
T Consensus 393 a~v~~~~~ 400 (417)
T COG2223 393 ALVLTWAL 400 (417)
T ss_pred HHHHHHHH
Confidence 77765443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=210.49 Aligned_cols=316 Identities=13% Similarity=0.146 Sum_probs=221.7
Q ss_pred cceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhccccc----ccchh-hHHHHHHHHHHHHHHHHhcch------hH
Q psy17080 141 HTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDK----FGRKK-ALMGSLVFQLVLGVLVAISPW------FE 209 (565)
Q Consensus 141 ~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr----~Grr~-~l~~~~~l~~~~~~~~~~~~~------~~ 209 (565)
+-+.+++++ +...+|++.++..+..++..|+.|+++|| +|||| .++.+....+++.+++.+.++ ..
T Consensus 24 ~~~~~~~g~---s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~ 100 (437)
T TIGR00792 24 FFYTDVLGL---SAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLV 100 (437)
T ss_pred HHHHHccCC---CHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHH
Confidence 334567888 88899999999999999999999999998 68744 677788888888888877654 45
Q ss_pred HHHHHHHHHhhhhhhhHhhhhhhhcccc-ccchhHHHHHHhhhhhHHHHHHHHHHHHH----------hcchhHHHHHHH
Q psy17080 210 LYLVVRFFLGFFCVSIVFSGFVLCMELV-GGKWLTIMGVMYLFPVPVGYIAISGIAYY----------SHNWRLLQWVIT 278 (565)
Q Consensus 210 ~l~~~r~l~G~~~~~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----------~~~Wr~~~~~~~ 278 (565)
.+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|.++++.+... ..+||+.+++.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~ 180 (437)
T TIGR00792 101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLA 180 (437)
T ss_pred HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHH
Confidence 6777888889988887777788889987 46889999998888888877665443221 137999998888
Q ss_pred HHHHHHHHH-hhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHH
Q psy17080 279 IPTIFFLTL-WWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIR 357 (565)
Q Consensus 279 ~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (565)
++.++..+. +++++|.++. +.+ +++++.+....+++++++|.++
T Consensus 181 ~l~~~~~~~~~~~~~e~~~~-----~~~------------------------------~~~~~~~~~~~~~~l~~~~~~~ 225 (437)
T TIGR00792 181 LIGVVSLIICFFGTKERYSE-----IPK------------------------------NIEKKLSLKQIFKALFKNDQLL 225 (437)
T ss_pred HHHHHHHHHHHcCCEecCCC-----CCc------------------------------ccccCCCHHHHHHHHhCCHHHH
Confidence 776665544 4566775310 000 0000001122356678888888
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHh
Q psy17080 358 LISFVQYIIWFSVYLVYYGLVLNLSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTL 434 (565)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~ 434 (565)
...+..++.+...........++.+....+ ......+..+..+++.++.+++.||+|+|+.+..+..+.+++.+.+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~ 305 (437)
T TIGR00792 226 ILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFF 305 (437)
T ss_pred HHHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 776666655554433222222222221111 22333445677788899999999999999999888887777766665
Q ss_pred hcCC-chHHHHHHHHHHHHHHHHHHHHHHHhcccccc-------hhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 435 GFAP-GSFITISLAMVGKFAISSSNVIIPIYTAELFP-------TKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 435 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
+.+ +.+...+..++.+++.+...+..+++.+|..+ .+.+|.+.|+.+++..+|..++|.+
T Consensus 306 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i 373 (437)
T TIGR00792 306 -FAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFL 373 (437)
T ss_pred -HcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 333 33444555667778888888888888888765 4557899999999999999999887
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-23 Score=237.63 Aligned_cols=312 Identities=17% Similarity=0.126 Sum_probs=222.0
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHH---HhcchhHHHHHHHHHHhhhhhhhHhhh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLV---AISPWFELYLVVRFFLGFFCVSIVFSG 229 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~ 229 (565)
+....+++.+++.++++++++++|+++||+|||++++.+.++.+++.++. .++++++.++++|+++|++.+...++.
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 34567999999999999999999999999999999999887666555543 345789999999999999999999999
Q ss_pred hhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhc------------chhHHHHHHHH-HHHHHHHHhhhcccchh
Q psy17080 230 FVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSH------------NWRLLQWVITI-PTIFFLTLWWIMPESPR 296 (565)
Q Consensus 230 ~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~------------~Wr~~~~~~~~-~~~~~~~~~~~~pesp~ 296 (565)
.+++.|++++++|++++++...+..+|.++++.++.++. +|++.+.+..+ ..++.+++.+++||+|+
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 999999999999999999999999999999888876542 23444433333 33344444566788765
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhhh
Q psy17080 297 WLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYG 376 (565)
Q Consensus 297 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (565)
+...+.+. +. ... .......++.+++++.++..++...+.++........
T Consensus 205 ~~~~~~~~-~~---------------~~~--------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1146)
T PRK08633 205 AAPEVFDK-KK---------------YLF--------------PKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQAN 254 (1146)
T ss_pred CCcccccc-cc---------------ccc--------------HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 31111000 00 000 0001113456777887776666555555443322222
Q ss_pred h-hhccCcCCCc----HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q psy17080 377 L-VLNLSNIGGD----VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGK 451 (565)
Q Consensus 377 ~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (565)
. .+....++.+ ..+.....+++.+++.++.+++.||+++++.+.++.++.+++.+++. +..+.+..++..++.+
T Consensus 255 ~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g 333 (1146)
T PRK08633 255 FPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLP-TAPSLASVLVLFFLFG 333 (1146)
T ss_pred hHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence 2 2222223322 23445556677788999999999999998888887777777666665 4444455556667777
Q ss_pred HHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 452 FAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 452 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
++.+...+...+++.+..|++.|++++|+.+++..+|.++++.+
T Consensus 334 ~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~ 377 (1146)
T PRK08633 334 FSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLAL 377 (1146)
T ss_pred HHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHH
Confidence 77777778888999999999999999999999999988777766
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-22 Score=203.27 Aligned_cols=334 Identities=11% Similarity=-0.004 Sum_probs=225.4
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccch----hhHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRK----KALMGSLVFQLVLGVLVAISPWFELYLVVR 215 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr----~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r 215 (565)
.|.+.+|++. +..++|++.+++.++..++++++|+++||+||| +.+.+...+. .......+++++.+++.|
T Consensus 27 l~~~l~~~g~---s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~ 101 (382)
T PRK11128 27 WSVWLKGQGY---TPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAI 101 (382)
T ss_pred HHHHHHhcCC---CHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHH
Confidence 4567788888 899999999999999999999999999999994 3332222221 223344568899999999
Q ss_pred HHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhcc
Q psy17080 216 FFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIMP 292 (565)
Q Consensus 216 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~p 292 (565)
++.|++.+...+...+++.++ .++|++..+......++|.+++|.++..+ .+||..|++.++..++..+..++.|
T Consensus 102 ~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 179 (382)
T PRK11128 102 GLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRP 179 (382)
T ss_pred HHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccC
Confidence 999999888888888887776 34567777777777788888888888765 4899999887765444444444445
Q ss_pred cchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHH
Q psy17080 293 ESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYL 372 (565)
Q Consensus 293 esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 372 (565)
|.++ +++. +++.++...++++++|+|.++...+..++.......
T Consensus 180 ~~~~----~~~~--------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~ 223 (382)
T PRK11128 180 TIMP----QGES--------------------------------RQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAA 223 (382)
T ss_pred CCCC----cccc--------------------------------ccccccccchHHHHHcChhHHHHHHHHHHHHHHhHh
Confidence 4321 0000 000001123567889999888776665555444322
Q ss_pred hhhhhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q psy17080 373 VYYGLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMV 449 (565)
Q Consensus 373 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (565)
.+...+.+..+.+.+. .....+..+.+++..++.+++.||+++|+.+..+.++.++..+++. ..++.+..++..++
T Consensus 224 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 302 (382)
T PRK11128 224 YYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMG-STTALPWLIVIQIL 302 (382)
T ss_pred HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 2222222333344332 3333455567778888999999999999999888888887766665 55555666666777
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhhhHHHHHH-HHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHH
Q psy17080 450 GKFAISSSNVIIPIYTAELFPTKMRNLGVGASS-VPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGL 519 (565)
Q Consensus 450 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~ 519 (565)
.+++.+...+....+..+. +++.+++..++.+ ....+|..++|.+ ...+..+. ..+...+++.+++.+
T Consensus 303 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 303 HCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 7888887778778888886 4555688888876 4456677888887 33444454 455555655554443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-23 Score=209.85 Aligned_cols=349 Identities=15% Similarity=0.084 Sum_probs=211.1
Q ss_pred eeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHH---hcchhH-HHHHHHHHH
Q psy17080 143 IISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVA---ISPWFE-LYLVVRFFL 218 (565)
Q Consensus 143 i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~---~~~~~~-~l~~~r~l~ 218 (565)
+.+++|+ +..+.|++.+++.++..+++++.|+++||+|||++++.+..+.+++..... .++... ......++.
T Consensus 37 l~~~~g~---s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (420)
T PRK09528 37 LHDINGL---SGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVG 113 (420)
T ss_pred HHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455888 888999999999999999999999999999999999887666554433211 111111 011112222
Q ss_pred hhhhhhhHhhhhhhhccccc--cchhHHHHHHhhhhhHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHHhhhc-cc
Q psy17080 219 GFFCVSIVFSGFVLCMELVG--GKWLTIMGVMYLFPVPVGYIAISGIAYYS--HNWRLLQWVITIPTIFFLTLWWIM-PE 293 (565)
Q Consensus 219 G~~~~~~~~~~~~~i~e~~~--~~~r~~~~~~~~~~~~lG~~~~~~l~~~~--~~Wr~~~~~~~~~~~~~~~~~~~~-pe 293 (565)
++..+.........+.++.+ .+++++..+.......+|..+++.++..+ .+|++.|++.++..++.++..+++ +|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 193 (420)
T PRK09528 114 GIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPD 193 (420)
T ss_pred HHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhccccc
Confidence 33222222222223333332 23455566666666677777777666554 389999998887776666555444 33
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHH---
Q psy17080 294 SPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSV--- 370 (565)
Q Consensus 294 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--- 370 (565)
.++....+ ++. ++++++......++.+|+|.++...+.........
T Consensus 194 ~~~~~~~~---~~~----------------------------~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~ 242 (420)
T PRK09528 194 APSTAKVA---NAL----------------------------GANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVF 242 (420)
T ss_pred ccchhhhc---cch----------------------------hcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHH
Confidence 32200000 000 00000001112345667776655444333222211
Q ss_pred --HHhhhhhhhccC-cCCC-cHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHH
Q psy17080 371 --YLVYYGLVLNLS-NIGG-DVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISL 446 (565)
Q Consensus 371 --~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (565)
....|....... ..+. .......+..+..+++.++.+++.||+|+|+.+..+.++.++..+++. +.++.+.....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~-~~~~~~~~~~~ 321 (420)
T PRK09528 243 DQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSG-FATGPLEVSIL 321 (420)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHH-hcccHHHHHHH
Confidence 111221111111 1111 123344455667788999999999999999998888888887777666 55565655555
Q ss_pred HHHHHHHHHHHHHHHHHhcccccchhhhhhHHHH-HHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHh-
Q psy17080 447 AMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGA-SSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVL- 522 (565)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~-~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~- 522 (565)
.++.+++.+...+....+..|.+|++.|++..+. .++...+|.+++|.+ ...+..++...|.+.+++.++..++.+
T Consensus 322 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 322 KLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666677888999999999888765 577788999998888 445667888888888887776665544
Q ss_pred hccc
Q psy17080 523 LLPD 526 (565)
Q Consensus 523 ~l~e 526 (565)
.+++
T Consensus 402 ~~~~ 405 (420)
T PRK09528 402 TLSG 405 (420)
T ss_pred HhcC
Confidence 4443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-22 Score=201.70 Aligned_cols=344 Identities=10% Similarity=0.028 Sum_probs=229.6
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccc-----cchh-hHHHHHHHHHHHHHHHHhc---chhHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKF-----GRKK-ALMGSLVFQLVLGVLVAIS---PWFEL 210 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~-----Grr~-~l~~~~~l~~~~~~~~~~~---~~~~~ 210 (565)
.|.+.+|-|+ +..++|++..+... .+..+++|+++||+ |||| .++.+.++.+++..+.++. .+++.
T Consensus 22 ~~~~l~~~g~---~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~ 96 (402)
T PRK11902 22 LQAWMTVEGL---DIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWP 96 (402)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHH
Confidence 5666777788 88999999777765 68999999999999 8875 7888888888888887776 35777
Q ss_pred HHHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHH
Q psy17080 211 YLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS----HNWRLLQWVITIPTIFFLT 286 (565)
Q Consensus 211 l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~~Wr~~~~~~~~~~~~~~~ 286 (565)
+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ .+||..|++.++..++..+
T Consensus 97 l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 97 LAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 888888889888999999999999999999999999999999999999988766553 3899999998887666655
Q ss_pred HhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHH
Q psy17080 287 LWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYII 366 (565)
Q Consensus 287 ~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 366 (565)
..+++||+++.. ++.++.+ ++...++++++|+|.++...+...+.
T Consensus 177 ~~~~~~e~~~~~---~~~~~~~--------------------------------~~~~~~~~~l~~~~~~~~~l~~~~l~ 221 (402)
T PRK11902 177 TTLWAPEPEVPA---RPPRSLG--------------------------------EAVVGPLRDFFSRRGAWALLLLIVLY 221 (402)
T ss_pred HHHhcCCCcccc---cccchhH--------------------------------HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 566778765320 0000000 00111356678888877666554444
Q ss_pred HHHHHHhh-hhhhhccCcCCCcHHHHHHH---HH-HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHh--hcCC-
Q psy17080 367 WFSVYLVY-YGLVLNLSNIGGDVYLNTII---SG-IVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTL--GFAP- 438 (565)
Q Consensus 367 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~--~~~~- 438 (565)
.......+ +...+.....+.+......+ .+ +..+++.++++++.||+|+|+.+..+..+..+..+.+. ...+
T Consensus 222 ~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~ 301 (402)
T PRK11902 222 KLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPK 301 (402)
T ss_pred HhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33222211 22223333344444322222 22 34778899999999999999887776666554443331 1222
Q ss_pred chHHHHHHH----HHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHH
Q psy17080 439 GSFITISLA----MVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGV 512 (565)
Q Consensus 439 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~ 512 (565)
+.+...... +..+++.+........++.+.+|.+.++. .+....++.++++.+ ...+..++...|.+.++
T Consensus 302 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~ 377 (402)
T PRK11902 302 HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYAL----LSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVV 377 (402)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 323333333 23455566667777788888888766544 333334444322223 33577788888888888
Q ss_pred HHHHHHHHHhhcccC
Q psy17080 513 VGVLGGLSVLLLPDT 527 (565)
Q Consensus 513 ~~~i~~~~~~~l~et 527 (565)
+++++.++....+.+
T Consensus 378 ~~~~~~~~~~~~~~~ 392 (402)
T PRK11902 378 IALPGLALLWLMRGT 392 (402)
T ss_pred HHHHHHHHHHHHhhh
Confidence 887776666555443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.6e-23 Score=205.05 Aligned_cols=307 Identities=13% Similarity=0.095 Sum_probs=212.3
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccc-----cchhh-HHHHHHHHHHHHHHHHhc---chhHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKF-----GRKKA-LMGSLVFQLVLGVLVAIS---PWFEL 210 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~-----Grr~~-l~~~~~l~~~~~~~~~~~---~~~~~ 210 (565)
.|.+.+|+++ +..+.|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.++..++.++. .+.+.
T Consensus 11 ~~~~~~~~g~---s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~ 85 (356)
T TIGR00901 11 LPYWLRSKNV---SLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPL 85 (356)
T ss_pred HHHHHHHcCC---CHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHH
Confidence 5778889999 88888988655 455555 89999999998 89987 567777788887777777 46667
Q ss_pred HHHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cc--------hhHHHHHHHH
Q psy17080 211 YLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HN--------WRLLQWVITI 279 (565)
Q Consensus 211 l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~--------Wr~~~~~~~~ 279 (565)
+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ .+ ||..|++.++
T Consensus 86 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai 165 (356)
T TIGR00901 86 LAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTAL 165 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHH
Confidence 777888889988888999999999999999999999999999999999998887553 25 9999999888
Q ss_pred HHHHHHHHhh-hcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHH---
Q psy17080 280 PTIFFLTLWW-IMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPL--- 355 (565)
Q Consensus 280 ~~~~~~~~~~-~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 355 (565)
..++..+..+ ..||+++. +.+.++.+ + +.+..++++++++.
T Consensus 166 ~~l~~~~~~~~~~~e~~~~---~~~~~~~~----------------------~----------~~~~~~~~~~~~~~~~~ 210 (356)
T TIGR00901 166 LILPGLLVTLFLAKEPQED---ASVPKPLT----------------------Q----------AVLKPIREFFQRKNMIQ 210 (356)
T ss_pred HHHHHHHHHHHhccCCCcc---cccchhHH----------------------H----------HHHHHHHHHHHhcCchH
Confidence 7766665544 35664321 00000000 0 00112344555553
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCcCCCcHHHH---HHHHH-HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q psy17080 356 IRLISFVQYIIWFSVYLVYYGLVLNLSNIGGDVYLN---TIISG-IVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACL 431 (565)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~ 431 (565)
++...+..++........+...+.+..+.+.+.... ....+ +..+++.++++++.||+|||+.+..+.++.+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~ 290 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNA 290 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 443333333333333322222333333344443332 22223 45678899999999999999988888877776655
Q ss_pred HHhhcC----------CchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHH
Q psy17080 432 MTLGFA----------PGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAG 486 (565)
Q Consensus 432 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 486 (565)
+..... ++.+......++.+++.+...+...++..|.+|++.|++.+|+.+...+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 291 GFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 444221 2224445555667888888899999999999999999999999877654
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=202.51 Aligned_cols=337 Identities=15% Similarity=0.132 Sum_probs=242.3
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhc-----chhHHHHHHHHHHhhhhhhhHh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAIS-----PWFELYLVVRFFLGFFCVSIVF 227 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~ 227 (565)
+...++++..+..+..++.++++|.++||+.||++++.+.++.++..+..++. .+.+.+++.-++.|++.+...|
T Consensus 43 S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~P 122 (524)
T PF05977_consen 43 SPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNP 122 (524)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999988877665554432 4788899999999999999999
Q ss_pred hhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCH
Q psy17080 228 SGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRN 304 (565)
Q Consensus 228 ~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~ 304 (565)
+..+++.|.+|+++...+.++.++..++..++||.+++.+ .|-.+.|++.++..++.+......+..++ +++.
T Consensus 123 A~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~----~~~~ 198 (524)
T PF05977_consen 123 AWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP----PSSL 198 (524)
T ss_pred HHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----cccc
Confidence 9999999999999999999999999999888888888764 35566777766655444443333332110 0000
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhhhhhhcc-Cc
Q psy17080 305 KEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNL-SN 383 (565)
Q Consensus 305 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 383 (565)
..++. .+.-+..++-+.++|.++..++...+..+.....+-.+++.. +.
T Consensus 199 -~~e~~-----------------------------~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~ 248 (524)
T PF05977_consen 199 -PRERF-----------------------------FSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDV 248 (524)
T ss_pred -chhhh-----------------------------hhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHH
Confidence 00000 000112344455677766655544433333222222233332 23
Q ss_pred CCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHH
Q psy17080 384 IGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVI 460 (565)
Q Consensus 384 ~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (565)
++.+. ++.....+++.++|.++.+++.+|+++++.+..+.++.+++++.+. +.++.+...+..++.|++.......
T Consensus 249 l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~la-l~~~~~~~~~~l~l~G~~~~~~~~~ 327 (524)
T PF05977_consen 249 LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLA-LSPSFWLALIALFLAGAAWIIANSS 327 (524)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34333 3455567788888999989999999988888888888888877777 6677677777778888888888888
Q ss_pred HHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhc
Q psy17080 461 IPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLL 524 (565)
Q Consensus 461 ~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 524 (565)
..+...+..|.+.||+++++..+....+..++.++ ...+..+....+.+.++..+++.++....
T Consensus 328 ~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 328 LNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred HHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999988888777777777 33456677777777776666665555433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-25 Score=213.75 Aligned_cols=323 Identities=15% Similarity=0.123 Sum_probs=210.4
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.+.+.+.||+ +....|++++.+.+.+++.+|++|+++|||.||+++.+|..++.++.++++++..||++++.|.+.|
T Consensus 56 ~~~v~~~fni---~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vG 132 (493)
T KOG1330|consen 56 LKEVQTYFNI---SDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVG 132 (493)
T ss_pred hHHHHHhcCC---CchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6778888999 7788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHHH-hhhcccc
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS----HNWRLLQWVITIPTIFFLTL-WWIMPES 294 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~~Wr~~~~~~~~~~~~~~~~-~~~~pes 294 (565)
+|.+...++++++++|.++..+|++++++++.+.++|..+|...+..+ ..|||.|+..++++++..++ .++++|+
T Consensus 133 iGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP 212 (493)
T KOG1330|consen 133 IGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREP 212 (493)
T ss_pred cchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCc
Confidence 999999999999999999999999999999998888887766555443 45999999999887776655 5667776
Q ss_pred hhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHH--------
Q psy17080 295 PRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYII-------- 366 (565)
Q Consensus 295 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------- 366 (565)
+| +..++.. +.++. .........+.+.+.++|.+....+.....
T Consensus 213 ~r-----ga~~~~~-------~~~~~----------------~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~s 264 (493)
T KOG1330|consen 213 ER-----GARDEVD-------GENKM----------------VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLS 264 (493)
T ss_pred cc-----ccccccc-------cCCcC----------------CCCccchHHHHHHHHccCceeeehHHHHHHHHhccccc
Confidence 53 1111100 00000 000001112233334444433333322222
Q ss_pred HHHHHHhhhhhhhccCcCCCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCh----HHHHHH-------HHHHHHHHHHHh
Q psy17080 367 WFSVYLVYYGLVLNLSNIGGD-VYLNTIISGIVEFPAIVISIFILLKMGRR----RPLCLT-------TLGAGLACLMTL 434 (565)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~dr~grr----~~l~~~-------~~~~~~~~~~~~ 434 (565)
|......|+...+ .....+ ......+...++.+|.++++.++||+.|+ ...... ..+.+...++..
T Consensus 265 ww~p~~~~~~~~~--~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~ 342 (493)
T KOG1330|consen 265 WWAPAFIYYSYEL--IGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFP 342 (493)
T ss_pred hhhhhHHHHHHHH--hCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHH
Confidence 2222233332222 112222 23344556677788899999999984331 111111 111122222222
Q ss_pred hcCCch-HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHH-HHHHHHHHHH
Q psy17080 435 GFAPGS-FITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPA-GVALILIPYL 495 (565)
Q Consensus 435 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~-~lg~~i~p~i 495 (565)
...... +..+++.+++-.......+...-...|+.|++.|.++.++...+. .+|.+-+|++
T Consensus 343 ~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~i 405 (493)
T KOG1330|consen 343 AFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYI 405 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcce
Confidence 112222 222222333323333334455567788999999999999987665 4566667755
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-22 Score=202.36 Aligned_cols=340 Identities=15% Similarity=0.091 Sum_probs=218.6
Q ss_pred eeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHH---Hhcc-----hhHHHHHHH
Q psy17080 144 ISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLV---AISP-----WFELYLVVR 215 (565)
Q Consensus 144 ~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~---~~~~-----~~~~l~~~r 215 (565)
.+++++ +..+.|++.+++.++..+++++.|+++||+|||+.++.+.+..+++.... .+.+ .+..+++.|
T Consensus 30 ~~~~g~---s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (396)
T TIGR00882 30 HDVNGL---SKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGG 106 (396)
T ss_pred HHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 456788 88899999999999999999999999999999999988776665544322 2222 233456778
Q ss_pred HHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHHhhh-cc
Q psy17080 216 FFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS--HNWRLLQWVITIPTIFFLTLWWI-MP 292 (565)
Q Consensus 216 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~--~~Wr~~~~~~~~~~~~~~~~~~~-~p 292 (565)
++.|++.+...+....+..|..++ ++...+......++|.++++.++..+ .+||..|++.++..++..+..++ .|
T Consensus 107 ~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 184 (396)
T TIGR00882 107 LYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKP 184 (396)
T ss_pred HHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCC
Confidence 888988888888887777665432 33344444455566666666665543 48999999988777666555444 34
Q ss_pred cchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHH
Q psy17080 293 ESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYL 372 (565)
Q Consensus 293 esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 372 (565)
|+|+. ++.++ .. +.++++.+..+.++++|+|.++...+..+........
T Consensus 185 ~~~~~-------~~~~~----~~--------------------~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 233 (396)
T TIGR00882 185 KAPSS-------ATVAN----AL--------------------GANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDV 233 (396)
T ss_pred CCchh-------hhhhc----cc--------------------ccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 43321 00000 00 0000111122456788888876555544333322111
Q ss_pred h-----hhhhhhccCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHH
Q psy17080 373 V-----YYGLVLNLSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITI 444 (565)
Q Consensus 373 ~-----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (565)
. .|..... ...+.+ ......+..+.+.++.+..+++.||+|||+.+.++.++.++...+.. ..++.+...
T Consensus 234 ~~~~~~~y~~~~~-~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~-~~~~~~~~~ 311 (396)
T TIGR00882 234 FDQQFANFFTSFF-ATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSS-FATTALEVV 311 (396)
T ss_pred HHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-hcCChHHHH
Confidence 1 1111111 111112 23334455667778889999999999999999888887777666655 445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHH-HHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy17080 445 SLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGA-SSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSV 521 (565)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~-~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~ 521 (565)
...++.+++..........+..+..|++.++++.+. .+....+|++++|.+ ...+..++..+|.+.+++.++..+..
T Consensus 312 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 312 ILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 555556666555555556677788888888887766 567889999999988 44566788888988888877766654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=229.43 Aligned_cols=311 Identities=13% Similarity=0.010 Sum_probs=220.5
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHH---HHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMG---SLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSG 229 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~---~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 229 (565)
.....++..+++.++++++++++|.++||+|||+++.. ..++.++..+.....+++++++++|+++|++.+...++.
T Consensus 50 ~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~ 129 (1140)
T PRK06814 50 NNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIK 129 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHH
Confidence 34567899999999999999999999999999997543 222333333333445899999999999999999999999
Q ss_pred hhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHH
Q psy17080 230 FVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKE 306 (565)
Q Consensus 230 ~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~ 306 (565)
.+++.+++++++|++++++.+++..+|.++++.++.++ .+|++.|+..++..++.+++.+++|+++.- .++...+
T Consensus 130 ~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 207 (1140)
T PRK06814 130 YSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA--APDLKID 207 (1140)
T ss_pred HHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCeec
Confidence 99999999999999999999999999999999998875 489999855656566666666777765420 0000000
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhhhhhhcc-CcCC
Q psy17080 307 AMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNL-SNIG 385 (565)
Q Consensus 307 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 385 (565)
... .. +....++.+.+++.++...+...+.++.........+.+. ..++
T Consensus 208 -----------------~~~---~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g 257 (1140)
T PRK06814 208 -----------------RNI---IR----------STITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLG 257 (1140)
T ss_pred -----------------cch---HH----------HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcC
Confidence 000 00 0011356677888888877776666655433322233332 2334
Q ss_pred Cc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhc-------------------CCchHHH
Q psy17080 386 GD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF-------------------APGSFIT 443 (565)
Q Consensus 386 ~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~-------------------~~~~~~~ 443 (565)
.+ ........+++.+++.++.+++.++.++++.+..+.++.+++.+.+... ..+.+..
T Consensus 258 ~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1140)
T PRK06814 258 GDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRI 337 (1140)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHH
Confidence 33 2344556677888899999999988776665555555544444333311 0333555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 444 ISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
.+..++.+++.+...+...+++.+..|++.||+++|+.+++..+|..+++.+
T Consensus 338 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~ 389 (1140)
T PRK06814 338 LIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTII 389 (1140)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHH
Confidence 5556667777777778889999999999999999999999999999998887
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=206.81 Aligned_cols=401 Identities=11% Similarity=0.067 Sum_probs=258.2
Q ss_pred CCCeEeCCCCcccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhc---
Q psy17080 129 CLQWTYDSSSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAIS--- 205 (565)
Q Consensus 129 C~~~~y~~~~~~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~--- 205 (565)
|.+..|..+.+.+.+.+++++ +..+.+++.++. ..+.+++++.|+++||+|||++++++.+++++++++++++
T Consensus 39 ~~g~~y~fsv~s~~L~~~lgl---s~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~ 114 (591)
T PTZ00207 39 CTSFMYAFNLISGAMQARYNL---TQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE 114 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhCc---CHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444456656678899999999 888888888774 4455678889999999999999999999999999999997
Q ss_pred ---chhHHHHHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHH-HHHHh-cchhHHHHHHHHH
Q psy17080 206 ---PWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISG-IAYYS-HNWRLLQWVITIP 280 (565)
Q Consensus 206 ---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~-l~~~~-~~Wr~~~~~~~~~ 280 (565)
++++.+++.|++.|+|.+...+.+...+.+|+| ++||++.++...+..+|.++.+. ...++ .+|+..|++.++.
T Consensus 115 ~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl 193 (591)
T PTZ00207 115 VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSF 193 (591)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 689999999999999999999999999999996 78999999999999999986443 33333 4888888887776
Q ss_pred HHHHHHH-hhh--cccchhHHHhcCCHHHHHHHHHHHHHHc--CCCCc-------------------------------h
Q psy17080 281 TIFFLTL-WWI--MPESPRWLVSMGRNKEAMKILGDAAKFN--SRKLP-------------------------------L 324 (565)
Q Consensus 281 ~~~~~~~-~~~--~pesp~~l~~~~~~~~a~~~l~~~~~~~--~~~~~-------------------------------~ 324 (565)
.++..++ .++ .|++|+|...+++.+++++.+++..+.. +++.| .
T Consensus 194 ~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~ 273 (591)
T PTZ00207 194 ALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGS 273 (591)
T ss_pred HHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 6554444 333 3566666555544444333322211100 00000 0
Q ss_pred hHH----H-HH---------------------------------HHH---hhhh--------c-cccCcccchhhccccH
Q psy17080 325 NLE----K-LL---------------------------------KES---VLST--------N-QDVGKKVQVMDLWRTP 354 (565)
Q Consensus 325 ~~~----~-~~---------------------------------~~~---~~~~--------~-~~~~~~~~~~~l~~~~ 354 (565)
... - .. +.. ...+ + ...+...++++.+++.
T Consensus 274 ~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~ 353 (591)
T PTZ00207 274 NFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTA 353 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhch
Confidence 000 0 00 000 0000 0 0011123677788888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCcC-C--CcH--HH-HHHHHHHHHHHHHHHHHHHHhh---------cCChHHH
Q psy17080 355 LIRLISFVQYIIWFSVYLVYYGLVLNLSNI-G--GDV--YL-NTIISGIVEFPAIVISIFILLK---------MGRRRPL 419 (565)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~--~~-~~~~~~~~~~~~~~~~~~l~dr---------~grr~~l 419 (565)
.+|...+.+++.+..............+.+ + .+. .. ...+.++.+.+|.+..|++... +.|-..+
T Consensus 354 d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l 433 (591)
T PTZ00207 354 RLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIAL 433 (591)
T ss_pred hHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHH
Confidence 888888877776654332222222111112 1 111 11 4567788888999888887621 2222233
Q ss_pred HHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHH-H--H
Q psy17080 420 CLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPY-L--W 496 (565)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~-i--~ 496 (565)
.+..+ +.++.+++....+. ..+.+..++.+++.|..+++....++|+|. +.-|+-.-+..+..-+|+.+..- + .
T Consensus 434 ~~~~~-~~~~~lll~~~~p~-~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~ 510 (591)
T PTZ00207 434 FIPSV-CIITMLTLFLTLPK-AALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGE 510 (591)
T ss_pred HHHHH-HHHHHHHHHHHCCc-cHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHH
Confidence 33334 55555555534442 355667788899999999999999999999 77788877777777777666422 2 1
Q ss_pred HHHHh----h---------hhhHHHHHHHHHHHHHHHHhhc-ccCCC-CCccHHHh
Q psy17080 497 HMQSI----N---------IHFPMGLLGVVGVLGGLSVLLL-PDTTG-LADNLHQL 537 (565)
Q Consensus 497 ~~~~~----~---------~~~~~~~~~~~~~i~~~~~~~l-~et~~-~~~~~~~~ 537 (565)
.++.. + +..+|++.+++++++.++...+ -+|++ ..+.++|.
T Consensus 511 ~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~~y~~~~~~~ 566 (591)
T PTZ00207 511 WYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRRLCLKALEER 566 (591)
T ss_pred HHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHHHHHHHHHHH
Confidence 12211 1 4678999999999888876443 45655 33334443
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.9e-23 Score=209.58 Aligned_cols=391 Identities=15% Similarity=0.110 Sum_probs=279.1
Q ss_pred CCeEeCCCCcccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhH
Q psy17080 130 LQWTYDSSSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFE 209 (565)
Q Consensus 130 ~~~~y~~~~~~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~ 209 (565)
++-.+....+.+.++++|+- +..+++|+.++....+.+.+|+.+.+.||||.|++.+.+.++.+++.++.+|++++|
T Consensus 59 ~g~~~~~Gv~~~~~~~~f~~---s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~ 135 (509)
T KOG2504|consen 59 DGLINSFGLLFEELMDYFGS---SSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLW 135 (509)
T ss_pred hcchheehhhHHHHHHHhCC---CccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33334444667888999997 777799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHH
Q psy17080 210 LYLVVR-FFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFL 285 (565)
Q Consensus 210 ~l~~~r-~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~ 285 (565)
++++.. ++.|+|.+..+....+.+..|+ +|+|+.+.++...+.++|.++.|.+...+ .|||+.+++.+.+.+-.+
T Consensus 136 ~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~ 214 (509)
T KOG2504|consen 136 QLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVL 214 (509)
T ss_pred HHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 888765 8999999999999999999887 57899999999999999999988777654 499999998777765555
Q ss_pred HHhhhc-ccchhHHHhcCCHHHHHHHHHHHH--------HHcC---CCCch---hHHHHHHHHhhhhccccCcccc----
Q psy17080 286 TLWWIM-PESPRWLVSMGRNKEAMKILGDAA--------KFNS---RKLPL---NLEKLLKESVLSTNQDVGKKVQ---- 346 (565)
Q Consensus 286 ~~~~~~-pesp~~l~~~~~~~~a~~~l~~~~--------~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~---- 346 (565)
+....+ |.+++-. +. .++..+...+.. +... ..... ......++ .+.+......+..
T Consensus 215 ~~~~~~rp~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 290 (509)
T KOG2504|consen 215 VAGALLRPLSPPKK--PN-EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKR-GPDKWRNSPLQAFLSML 290 (509)
T ss_pred HHHHHcCCCCcCCC--ch-hhhhhccccccccccccccccccccCCCCCCcccccchhhhhh-CCccccccchhhhhhhh
Confidence 544333 3222210 00 000000000000 0000 00000 00000000 0001110011112
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHHhhhhhhhccCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcC--ChHHHHH
Q psy17080 347 VMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMG--RRRPLCL 421 (565)
Q Consensus 347 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~g--rr~~l~~ 421 (565)
-.++++++.+....+...+..+.....++.++.+....+.+ ......+.++..++++++.|++.|+.. ++....+
T Consensus 291 d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~ 370 (509)
T KOG2504|consen 291 DLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLL 370 (509)
T ss_pred hHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHH
Confidence 25888998877777766666666555555555554455443 455666788899999999999999987 4455566
Q ss_pred HHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHH
Q psy17080 422 TTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQ 499 (565)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~ 499 (565)
+.++.+++.+... +..+.+..+...++.++..+.........+.|+.+.+.-..+.|+..++..++.+++|.+ ...+
T Consensus 371 ~ll~~gl~~~~~p-~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d 449 (509)
T KOG2504|consen 371 TLLIAGLARLFLP-FATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYD 449 (509)
T ss_pred HHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeee
Confidence 6666677765555 556667777788888888888888888899999999999999999999999999999888 2334
Q ss_pred Hh-hhhhHHHHHHHHHHHHHHHHhhcc-cCCC
Q psy17080 500 SI-NIHFPMGLLGVVGVLGGLSVLLLP-DTTG 529 (565)
Q Consensus 500 ~~-~~~~~~~~~~~~~~i~~~~~~~l~-et~~ 529 (565)
.. +|...|...+++.++++++++..| +.+.
T Consensus 450 ~tg~Y~~~f~~~g~~~~~s~~~~~~~~~~~~~ 481 (509)
T KOG2504|consen 450 ITGNYDHAFYFCGLCFLLSAVLLLILRECLKR 481 (509)
T ss_pred ccCCeeeehhhcChHHHHHHHHHHHhHHHHHh
Confidence 43 378889999999999988887777 4433
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-20 Score=193.64 Aligned_cols=351 Identities=15% Similarity=0.111 Sum_probs=218.0
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.+.|..|.+ +.....|+.+.+.++..++.++.|.++|.||||.+++.+.++..++++.++.++|...++++..+.|
T Consensus 67 l~~I~~diG----~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~G 142 (599)
T PF06609_consen 67 LPYINADIG----GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYG 142 (599)
T ss_pred HHHHHHhcC----CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHH
Confidence 345666666 3455688999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhcccchh
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIMPESPR 296 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~pesp~ 296 (565)
+|.|.... ....++|..|.|+|....++......+....++.++..+ .+|||.|++..+...+.++..++...+|+
T Consensus 143 vgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~ 221 (599)
T PF06609_consen 143 VGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPP 221 (599)
T ss_pred HhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99766654 455689999999998877766655555444556665443 48999999987765555444332222333
Q ss_pred HHHhcCCHHHHHHHHHHHHH----------------Hc--CC-----CCchhHHHHHH------H-HhhhhccccCcccc
Q psy17080 297 WLVSMGRNKEAMKILGDAAK----------------FN--SR-----KLPLNLEKLLK------E-SVLSTNQDVGKKVQ 346 (565)
Q Consensus 297 ~l~~~~~~~~a~~~l~~~~~----------------~~--~~-----~~~~~~~~~~~------~-~~~~~~~~~~~~~~ 346 (565)
+-..+++....++.+++++- .+ +. +...-+..... . ...|.....+.+.-
T Consensus 222 ~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~ 301 (599)
T PF06609_consen 222 RAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLF 301 (599)
T ss_pred hhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcC
Confidence 32233322112222332211 11 11 11111100000 0 01111112223445
Q ss_pred hhhccccHH-HHHHHHHHHHHHHH-HHHhhhhhhhccCcCCC------cHHHHHHHHHHHHHHHHHHHHHHHhhcCC-hH
Q psy17080 347 VMDLWRTPL-IRLISFVQYIIWFS-VYLVYYGLVLNLSNIGG------DVYLNTIISGIVEFPAIVISIFILLKMGR-RR 417 (565)
Q Consensus 347 ~~~l~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~dr~gr-r~ 417 (565)
..++||+++ +...+++.++.... ....++.......-++. .........+++...+.++.+.+..+++| |+
T Consensus 302 P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw 381 (599)
T PF06609_consen 302 PHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKW 381 (599)
T ss_pred CHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhH
Confidence 567888744 32222222221111 11111111111111111 22344455666777888888899988887 44
Q ss_pred HHHHHHHHHHHHHHHHhhcCCch-HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 418 PLCLTTLGAGLACLMTLGFAPGS-FITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 418 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
.++++.+++.+++.++....++. ...+.+.++.+++.+.......+.++-..|++.-+++.|+...+..+|+.++.-+
T Consensus 382 ~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aI 460 (599)
T PF06609_consen 382 QLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAI 460 (599)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 55566656555544444343333 4445667788888888877788888888999999999999988888887776554
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-22 Score=186.62 Aligned_cols=320 Identities=17% Similarity=0.128 Sum_probs=200.4
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVL 232 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 232 (565)
+....|.+.|.|+++..+.++.+|.++||+|||+++++|++..++..++.+++.|+..++++|++.|+.. +...+..++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~k-gnl~v~rAi 144 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFK-GNLSVIRAI 144 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CchHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999977777799999995 456677899
Q ss_pred hccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhcc-----hhHHHHH----HHHHHHH-HHHHhhhcccchhHHHhcC
Q psy17080 233 CMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSHN-----WRLLQWV----ITIPTIF-FLTLWWIMPESPRWLVSMG 302 (565)
Q Consensus 233 i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~~-----Wr~~~~~----~~~~~~~-~~~~~~~~pesp~~l~~~~ 302 (565)
++|+.++|+|++.++...+.+++|.++||.+++++.- =+++|.. ..+.+.. .....+++||+-+ .++
T Consensus 145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~---~rk 221 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP---LRK 221 (451)
T ss_pred HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc---chh
Confidence 9999999999999999999999999999999877532 1111222 2222222 3455678999832 111
Q ss_pred CHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHH-------HHHHHHHHHH-HHHHhh
Q psy17080 303 RNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRL-------ISFVQYIIWF-SVYLVY 374 (565)
Q Consensus 303 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~-~~~~~~ 374 (565)
+.+++.... +.. +.. ++..+.....-..+.|++.... ..+..+.... .....+
T Consensus 222 ~~~~~~~~~-~~~---------------~~~---~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~ 282 (451)
T KOG2615|consen 222 RNDEHSTLQ-EAA---------------DDR---LALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLEN 282 (451)
T ss_pred hcccccchh-hhh---------------hhh---hhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111000 000 000 0000000000011222222221 1111111111 111122
Q ss_pred hhhhhccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q psy17080 375 YGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGR-----RRPLCLTTLGAGLACLMTLGFAPGSFITISLAMV 449 (565)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr-----r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (565)
+...+....++.+.....-+....++.+.++.+.+..+..| +..+...+.++.-..+++. .............+
T Consensus 283 t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls-~~~~~~~l~~~s~l 361 (451)
T KOG2615|consen 283 TVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLS-LARTPVVLYLGSTL 361 (451)
T ss_pred hHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHh-ccccchhhhHHHHH
Confidence 22222234444433222222223334444455555554443 3344444444444444444 55555555556666
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy17080 450 GKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLW 496 (565)
Q Consensus 450 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~ 496 (565)
..+......+....++....|++.||+..|+....+.++-+++|.+.
T Consensus 362 ~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~ 408 (451)
T KOG2615|consen 362 KSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVS 408 (451)
T ss_pred HHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhh
Confidence 66666777788889999999999999999999999999999999984
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=193.72 Aligned_cols=344 Identities=11% Similarity=-0.009 Sum_probs=219.9
Q ss_pred ccceeeccccccCcchh-hHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q psy17080 140 GHTIISEWDLVCSNSSL-ESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFL 218 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~-~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~ 218 (565)
.|.+.+|+|+ +..+ .|.+.++++.+|+++.++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+.|++.
T Consensus 49 ~p~L~~elgl---T~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~ll 125 (511)
T TIGR00806 49 TPYLLTVLNF---TEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFY 125 (511)
T ss_pred HHHHHHHcCC---CHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778889999 7777 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh--cchhHHHH---HHHHHHHHHHHHhhhccc
Q psy17080 219 GFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS--HNWRLLQW---VITIPTIFFLTLWWIMPE 293 (565)
Q Consensus 219 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~--~~Wr~~~~---~~~~~~~~~~~~~~~~pe 293 (565)
|++.|+.. +...++..|+|+++|+++.++...+..+|.+++++++..+ .|||+.+. +......+.++..+++|.
T Consensus 126 GvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~ 204 (511)
T TIGR00806 126 SVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKR 204 (511)
T ss_pred HHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999 9999999999999999999999999999999988887664 37887544 333344555566788886
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHH-hhhhccccCcccchhhccccHHHHHHHHHHHHHHH-HHH
Q psy17080 294 SPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKES-VLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWF-SVY 371 (565)
Q Consensus 294 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 371 (565)
.+|-+.-+++.+.......+. +...+++..+..+.. ......-..-...+++..+++.+....+--.+... ...
T Consensus 205 ~~~sl~f~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~q 280 (511)
T TIGR00806 205 PKRSLFFNRLEDVRGALPCEL----DQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYL 280 (511)
T ss_pred Cchhhhhcccccccccccccc----ccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHH
Confidence 666444443211100000000 000000000000000 00000000011234445556554443332222222 222
Q ss_pred HhhhhhhhccCcCC----CcHHHHHHHHHHHHHHHHHHHHHHHhhcCCh--HHHHHHHHHHHHHHHHHhhcCCchHHHHH
Q psy17080 372 LVYYGLVLNLSNIG----GDVYLNTIISGIVEFPAIVISIFILLKMGRR--RPLCLTTLGAGLACLMTLGFAPGSFITIS 445 (565)
Q Consensus 372 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (565)
..+|...++..-.. .|. ..-.+..+.+.++.+..|++-.++.+- ..+.+..++.+...+++. ...+.|...+
T Consensus 281 v~~Y~Q~LW~~v~~~~~~yNG-~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~-~t~~Iw~~Y~ 358 (511)
T TIGR00806 281 ITYYVHTLWGTLDESLNKYNG-AVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMS-QSHDIWVLYV 358 (511)
T ss_pred HHHHHHHHHHHcCCCccccCC-HHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhh-cccchHHHHH
Confidence 33344333322111 111 122233344555677777775555432 222333333333333444 6666688888
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy17080 446 LAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIP 493 (565)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p 493 (565)
..++.+.......++...-+++....+.-|..+|+.+++.-+-..+-.
T Consensus 359 ~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT 406 (511)
T TIGR00806 359 TYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIIT 406 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheE
Confidence 888888888888888887777777777778889988877665544433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-20 Score=193.95 Aligned_cols=371 Identities=10% Similarity=0.027 Sum_probs=229.0
Q ss_pred cccccCcchhhHHHHHHHHHHHhhhhhhhhccccc-ccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhh
Q psy17080 147 WDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDK-FGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSI 225 (565)
Q Consensus 147 ~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr-~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 225 (565)
+++ +..+.+++.+.+.++..++++++|+++|| +|||++++++.++.+++.++.+++++++.+++.|++.|++.|..
T Consensus 43 lg~---s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~ 119 (475)
T TIGR00924 43 LGF---SQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLF 119 (475)
T ss_pred CCC---CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccc
Confidence 777 78889999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred Hhhhhhhhccccccch---hHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhcc----cch
Q psy17080 226 VFSGFVLCMELVGGKW---LTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIMP----ESP 295 (565)
Q Consensus 226 ~~~~~~~i~e~~~~~~---r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~p----esp 295 (565)
.+...++++|++++++ |+.+.++...+.++|.++++.++..+ .+||+.|++.++..++.++.+++.+ +.|
T Consensus 120 ~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~ 199 (475)
T TIGR00924 120 KANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIG 199 (475)
T ss_pred cCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCC
Confidence 9999999999998754 88888999999999999999887765 3899999987765544444433332 222
Q ss_pred hHHHhcCCHHHHHHHHHH------------HHHHcCCCCchhHHHH---HHHHhhhhccccCcccchhhccccHHHHHHH
Q psy17080 296 RWLVSMGRNKEAMKILGD------------AAKFNSRKLPLNLEKL---LKESVLSTNQDVGKKVQVMDLWRTPLIRLIS 360 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 360 (565)
+. ..+.+.++.+..... ......+....+.... ............++..+..+..|...+....
T Consensus 200 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 278 (475)
T TIGR00924 200 SV-PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLF 278 (475)
T ss_pred CC-CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHH
Confidence 10 000011110000000 0000000000000000 0000000000000001111111111222223
Q ss_pred HHHHHHHHHHHHhhhhhhhccCc--------CCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----hHH--HHHHHHH
Q psy17080 361 FVQYIIWFSVYLVYYGLVLNLSN--------IGGDVYLNTIISGIVEFPAIVISIFILLKMGR-----RRP--LCLTTLG 425 (565)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr-----r~~--l~~~~~~ 425 (565)
+...+.|....-.....+++..+ ..........+.++.-++..++..++..|.+| +.. +.+++++
T Consensus 279 ~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l 358 (475)
T TIGR00924 279 LEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLF 358 (475)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence 33333444333222222222111 11123445555666555555554443333333 233 3667777
Q ss_pred HHHHHHHHhhc--------CCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy17080 426 AGLACLMTLGF--------APGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWH 497 (565)
Q Consensus 426 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~ 497 (565)
.+++++.+... ..+.++.+...++.+++.....|....++.+..|++.||+.+|+......+|..+++.+..
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~ 438 (475)
T TIGR00924 359 CGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLAT 438 (475)
T ss_pred HHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776665421 2244666777888899999999999999999999999999999999999999999888733
Q ss_pred H--HHhhhhhHHHHHHHHHHHHHHHH
Q psy17080 498 M--QSINIHFPMGLLGVVGVLGGLSV 521 (565)
Q Consensus 498 ~--~~~~~~~~~~~~~~~~~i~~~~~ 521 (565)
. ...++...+...++..++.+++.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (475)
T TIGR00924 439 FGAVPQGVTGVFGKIGLVTLLVGVVM 464 (475)
T ss_pred HHhcccchhhHHHHHHHHHHHHHHHH
Confidence 2 33344545566665555555444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=195.12 Aligned_cols=372 Identities=12% Similarity=0.032 Sum_probs=229.1
Q ss_pred eeeccccccCcchhhHHHHHHHHHHHhhhhhhhhccccc-ccchhhHHHHHHHHHHHHHHHHhcchhHH-HHHHHHHHhh
Q psy17080 143 IISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDK-FGRKKALMGSLVFQLVLGVLVAISPWFEL-YLVVRFFLGF 220 (565)
Q Consensus 143 i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr-~Grr~~l~~~~~l~~~~~~~~~~~~~~~~-l~~~r~l~G~ 220 (565)
+.+++++ +....+++.+.+.....+..+++|+++|| +|||++++.+.++++++++.++++.+... ++++|+++|+
T Consensus 41 l~~~lg~---~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~i 117 (489)
T PRK10207 41 FVKQLGF---SQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAV 117 (489)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHh
Confidence 4556888 77778899999998888889999999999 99999999999999999999999876554 5589999999
Q ss_pred hhhhhHhhhhhhhccccccc--hhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhcccch
Q psy17080 221 FCVSIVFSGFVLCMELVGGK--WLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIMPESP 295 (565)
Q Consensus 221 ~~~~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~pesp 295 (565)
|.|...+...+++.|.+|++ +|+.+.+++..+.++|.++++.++.++ .|||+.|++.++..++.++.+++.++..
T Consensus 118 g~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~ 197 (489)
T PRK10207 118 GNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMV 197 (489)
T ss_pred ccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 99999999999999999877 457788888999999998888777664 3899999986554333333333333221
Q ss_pred hHHH--hcC-CHHHHHHHHH---------HHHHHcCCCCchhHHHHH----HHH-hhhhccccCcccchhhccccHHHHH
Q psy17080 296 RWLV--SMG-RNKEAMKILG---------DAAKFNSRKLPLNLEKLL----KES-VLSTNQDVGKKVQVMDLWRTPLIRL 358 (565)
Q Consensus 296 ~~l~--~~~-~~~~a~~~l~---------~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (565)
+... .++ +.|.....+. .................. ... -..++.+ ..+++|+|.+..
T Consensus 198 ~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~------~~~~~r~r~~~~ 271 (489)
T PRK10207 198 KDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFK------LDKTGRNKMFVA 271 (489)
T ss_pred cccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc------CCHHHHHHHHHH
Confidence 1000 001 1111110000 000000000000000000 000 0000000 014556555443
Q ss_pred HHHH--HHHHHHHHHHhhhhhhhccCc-C-----C--CcHHHHHHHHHHHHHHHHHHHHHHHhhcCChH-------HHHH
Q psy17080 359 ISFV--QYIIWFSVYLVYYGLVLNLSN-I-----G--GDVYLNTIISGIVEFPAIVISIFILLKMGRRR-------PLCL 421 (565)
Q Consensus 359 ~~~~--~~~~~~~~~~~~~~~~~~~~~-~-----~--~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~-------~l~~ 421 (565)
..+. ..+.|.......+..+++.++ . + ..+.....+..+..++..++.+++.||+++|+ .+.+
T Consensus 272 ~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~ 351 (489)
T PRK10207 272 FVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTL 351 (489)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 3322 223333333332333322221 1 1 12233333444555567777889999999886 3666
Q ss_pred HHHHHHHHHHHHh----hcC-----CchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHH
Q psy17080 422 TTLGAGLACLMTL----GFA-----PGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILI 492 (565)
Q Consensus 422 ~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~ 492 (565)
++++.+++++.+. ... .+.++.+...++.+++.....+....++.+..|++.++.++|+.++...+|+.++
T Consensus 352 G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg 431 (489)
T PRK10207 352 GMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLG 431 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 7677666654321 011 1225555667788899999999999999999999999999999999888888888
Q ss_pred HHHHHHH------------HhhhhhHHHHHHHHHHHHHHHHhh
Q psy17080 493 PYLWHMQ------------SINIHFPMGLLGVVGVLGGLSVLL 523 (565)
Q Consensus 493 p~i~~~~------------~~~~~~~~~~~~~~~~i~~~~~~~ 523 (565)
..+.... ...+...|...++.+++++++.+.
T Consensus 432 ~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~ 474 (489)
T PRK10207 432 GYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL 474 (489)
T ss_pred HHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7663211 112344566666665555554433
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-22 Score=187.28 Aligned_cols=333 Identities=15% Similarity=0.065 Sum_probs=237.0
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVL 232 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 232 (565)
++.++|++..++.+.+.+.+++.|.+.||+|+|..+++++..+.+++++.+|..++++++++|.++|+|.+...++..++
T Consensus 104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglam 183 (464)
T KOG3764|consen 104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAM 183 (464)
T ss_pred cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHH
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccc-hhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHHHH
Q psy17080 233 CMELVGGK-WLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAM 308 (565)
Q Consensus 233 i~e~~~~~-~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~ 308 (565)
+++.+|.+ +|++++|+...+.++|.+++|.+++.+ .|.+.+|++.++.+++-..+.+++-|.-+
T Consensus 184 lAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~------------ 251 (464)
T KOG3764|consen 184 LADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE------------ 251 (464)
T ss_pred HHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc------------
Confidence 99999865 579999999999999999999988765 58999999999998888877666544311
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhhhhhhc-cCcC---
Q psy17080 309 KILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLN-LSNI--- 384 (565)
Q Consensus 309 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--- 384 (565)
.++...++..++++++++|..+..............+.-=.++.+ .+++
T Consensus 252 ---------------------------~~~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p 304 (464)
T KOG3764|consen 252 ---------------------------MDPDSTEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTP 304 (464)
T ss_pred ---------------------------cCccccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCC
Confidence 000012234467888999887665554444333333322222222 1222
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhcCChH--HHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy17080 385 GGDVYLNTIISGIVEFPAIVISIFILLKMGRRR--PLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIP 462 (565)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (565)
++..++.++..++...++..+.+.+.||++.-+ ....+++..+.++.... +..+....++..+..+++.+.......
T Consensus 305 ~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP-~~~~~~~L~vp~~~l~~~i~~~dasl~ 383 (464)
T KOG3764|consen 305 GWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIP-FATSIAQLWVPNFGLGFGIGLADASLI 383 (464)
T ss_pred CcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhH-hhhhHHHHhhhhHHHHHHHHHHHHHHh
Confidence 234455666677778889999999999999433 33334444444333333 223322233333333333333322222
Q ss_pred ---Hhcccccchh---hhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhcc
Q psy17080 463 ---IYTAELFPTK---MRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLLP 525 (565)
Q Consensus 463 ---~~~~e~~p~~---~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 525 (565)
.+..+.-..+ .-|...++......+|.+++|.+ ......++.+...+.++..++.+-++.+++
T Consensus 384 P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~ 454 (464)
T KOG3764|consen 384 PTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLR 454 (464)
T ss_pred hhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222223 45788888888999999999998 445667888888888888887766554443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-20 Score=174.74 Aligned_cols=334 Identities=14% Similarity=0.040 Sum_probs=244.4
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHH---hcchhHHHHHHHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVA---ISPWFELYLVVRF 216 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~---~~~~~~~l~~~r~ 216 (565)
.|.+.+.|++ +..+.++++.+++.|+.+++++.|++.+|+|+|+.++.++.++++++.+.. -..+|..++++-+
T Consensus 36 ip~l~~~f~l---s~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lF 112 (422)
T COG0738 36 IPHLKEVFDL---TYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALF 112 (422)
T ss_pred HHHHHHHhCc---cHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 7889999999 999999999999999999999999999999999999999999999999884 5678999999999
Q ss_pred HHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhc----------------------chhHHH
Q psy17080 217 FLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSH----------------------NWRLLQ 274 (565)
Q Consensus 217 l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~----------------------~Wr~~~ 274 (565)
+.|.|.+...+.+..++....+++...+.+.+.+...++|.+++|.++..+- .|+++|
T Consensus 113 ila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pY 192 (422)
T COG0738 113 ILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPY 192 (422)
T ss_pred HHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHH
Confidence 9999999999999999999999988888889999999999999988775431 366777
Q ss_pred HHHHHHHHHHHHHhhh--cccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccc
Q psy17080 275 WVITIPTIFFLTLWWI--MPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWR 352 (565)
Q Consensus 275 ~~~~~~~~~~~~~~~~--~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 352 (565)
...+...++..+.... .|+.+. ..++..+.+.....+++|
T Consensus 193 l~~~~~lvll~v~~~~~k~p~~~~--------------------------------------~~~~~~~~~~~~~~~l~~ 234 (422)
T COG0738 193 LILAGLLVLLAVLILLSKLPDLQV--------------------------------------AAPSLGASGSAGLSSLFQ 234 (422)
T ss_pred HHHHHHHHHHHHHHHhccCCcCCc--------------------------------------ccccccccccchHHHHHh
Confidence 7766655554444332 232210 000111111125788999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhhhhhccCc-CCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q psy17080 353 TPLIRLISFVQYIIWFSVYLVYYGLVLNLSN-IGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGL 428 (565)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~ 428 (565)
+|.++...+..++...........+..+..+ .+.+ ........-.+.++|++++.+++.|+...+.+....++..+
T Consensus 235 ~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~il 314 (422)
T COG0738 235 NKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAIL 314 (422)
T ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 9999888887776555443333333322222 3322 22333444566788999999999999999998888877776
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhH
Q psy17080 429 ACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFP 506 (565)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~ 506 (565)
.++... +..+ ...+...++.+++++..+|..++...+..| +.. ...|..-.+..+|+.+.|.+ ...+..+....
T Consensus 315 l~~~~~-l~~g-~v~~~~l~~ig~F~simfPTIfslal~~l~-~~t-s~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~ 390 (422)
T COG0738 315 LLLAVA-LIGG-VVALYALFLIGLFNSIMFPTIFSLALKNLG-EHT-SVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLT 390 (422)
T ss_pred HHHHHH-HhcC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccc-cccceeeeeheecchHHHHHHHHHHHhhhhHHH
Confidence 666666 5555 344455667788999999999999999999 443 33344445567888888888 44566666655
Q ss_pred HHHHHHHHHHHH
Q psy17080 507 MGLLGVVGVLGG 518 (565)
Q Consensus 507 ~~~~~~~~~i~~ 518 (565)
+.....++.+..
T Consensus 391 ~~~~pllc~lyV 402 (422)
T COG0738 391 FLIVPLLCYLYV 402 (422)
T ss_pred HHHHHHHHHHHH
Confidence 554555555444
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-19 Score=179.33 Aligned_cols=340 Identities=11% Similarity=0.019 Sum_probs=219.3
Q ss_pred ccceeeccccccCcchhhHHH--HHHHHHHHhhhhhhh-hcccccccchhhHHHHHHH-HHHHHHHHH---hcch-hHHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLA--EMVFLLGVAFGGFFS-GLVSDKFGRKKALMGSLVF-QLVLGVLVA---ISPW-FELY 211 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~--~s~~~lg~~ig~~~~-G~l~Dr~Grr~~l~~~~~l-~~~~~~~~~---~~~~-~~~l 211 (565)
.|.+.+|.++ +..++|+. .++..+...+.+++. ++.+||+||||..++...+ .++.....+ ...+ ..++
T Consensus 24 lp~~l~~~g~---~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (390)
T TIGR02718 24 LPTLLREDGA---PLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWA 100 (390)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 5677788888 88899997 366678887888888 5589999999987555533 222222222 2222 3344
Q ss_pred HHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHh
Q psy17080 212 LVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLW 288 (565)
Q Consensus 212 ~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~ 288 (565)
+..-++.++..+...+....+..|..++++++...+....+..+|.++++.....+ .+||..|++.++..++..+..
T Consensus 101 ~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~ 180 (390)
T TIGR02718 101 VGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCV 180 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 55566667777778888888889999999889988888888899999988655442 489999999888776655555
Q ss_pred hhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHH
Q psy17080 289 WIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWF 368 (565)
Q Consensus 289 ~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 368 (565)
++++|+++. +.+.+ +++..++++++|+|..+......++...
T Consensus 181 ~~~~~~~~~---~~~~~-----------------------------------~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 222 (390)
T TIGR02718 181 LWLKDRAVA---SPEAP-----------------------------------LARRASLFRFFRRPLAWSLLALALLSAM 222 (390)
T ss_pred HHcCCCCcC---ccccc-----------------------------------hhhHHHHHHHHcCcCHHHHHHHHHHHHH
Confidence 555443210 00000 0011135567788877666655554444
Q ss_pred HHHHhhhhhhhccCcCCCcHHHHHHH---HHH-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhc-----CCc
Q psy17080 369 SVYLVYYGLVLNLSNIGGDVYLNTII---SGI-VEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF-----APG 439 (565)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~-----~~~ 439 (565)
.....+...+.+..+.+.+......+ .++ ..+++.++.+++.||+|+|+.+..+..+.++..+..... .+.
T Consensus 223 ~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (390)
T TIGR02718 223 TAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPG 302 (390)
T ss_pred HHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCc
Confidence 33333333334444555554433332 232 445678899999999999998887766553332222211 122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccccch-hhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHH
Q psy17080 440 SFITISLAMVGKFAISSSNVIIPIYTAELFPT-KMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVL 516 (565)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i 516 (565)
.........+.++..+...+...+...+..++ +.+++.+++.+....+|..++|.+ ...+..++...|.+.+++.++
T Consensus 303 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~ 382 (390)
T TIGR02718 303 IAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVL 382 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 22223333444555666667777776666665 789999999999999999999998 445666777788877777766
Q ss_pred HHHH
Q psy17080 517 GGLS 520 (565)
Q Consensus 517 ~~~~ 520 (565)
+.+.
T Consensus 383 a~~~ 386 (390)
T TIGR02718 383 AILL 386 (390)
T ss_pred HHHH
Confidence 6544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=177.30 Aligned_cols=358 Identities=13% Similarity=0.120 Sum_probs=231.5
Q ss_pred cceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccc----cccchhhHHHH-HHHHHHHHHHHHhcchhH------
Q psy17080 141 HTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSD----KFGRKKALMGS-LVFQLVLGVLVAISPWFE------ 209 (565)
Q Consensus 141 ~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~D----r~Grr~~l~~~-~~l~~~~~~~~~~~~~~~------ 209 (565)
+.+.+++++ +....+++..+..+..++.+++.|.++| |+|||+.++.+ .+...++.++.++++++.
T Consensus 28 ~~yl~~lg~---~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~ 104 (477)
T TIGR01301 28 TPYVQELGI---PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDN 104 (477)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcccc
Confidence 445667888 7888999999999999999999999999 59999988875 666666667777776643
Q ss_pred -----------HHHHHHHHHhhhhhhhHhhhhhhhccccccchh--HHHHHHhhhhhHHHHHHHHHHHHHh---------
Q psy17080 210 -----------LYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWL--TIMGVMYLFPVPVGYIAISGIAYYS--------- 267 (565)
Q Consensus 210 -----------~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~lG~~~~~~l~~~~--------- 267 (565)
.++++-.+..++.....+...++++|.+|+++| +.+.++.+....+|.++++.+++..
T Consensus 105 ~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~ 184 (477)
T TIGR01301 105 LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFT 184 (477)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccc
Confidence 223333444557777888889999999998865 5788888888899999988877643
Q ss_pred ---------cchhHHHHHHHHHHHHHHHH-hhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhh
Q psy17080 268 ---------HNWRLLQWVITIPTIFFLTL-WWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLST 337 (565)
Q Consensus 268 ---------~~Wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (565)
.+.|..|++.++..++..+. .+.++|.|... .++.++. +.+ +
T Consensus 185 ~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~~-----~~~---------------------~ 236 (477)
T TIGR01301 185 KTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFINS-----EAA---------------------P 236 (477)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchhh-----hcc---------------------c
Confidence 14577888877766555544 56788875311 0000000 000 0
Q ss_pred ccccCcccchhhccc-----cHHHHHHHHHHHHHHHHHHHhh-hhhhh-----ccCcCC-CcH--------HHHHHHHHH
Q psy17080 338 NQDVGKKVQVMDLWR-----TPLIRLISFVQYIIWFSVYLVY-YGLVL-----NLSNIG-GDV--------YLNTIISGI 397 (565)
Q Consensus 338 ~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~-~~~--------~~~~~~~~~ 397 (565)
.++.+....++++++ .|.+++..++.++.|+...... |...+ +-..-. ... .+...+.++
T Consensus 237 ~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~ 316 (477)
T TIGR01301 237 PSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSV 316 (477)
T ss_pred ccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 000000011222222 3567888888888888643322 22221 111110 111 123344555
Q ss_pred HHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHhhcCC--c------------------hHHHHHHHHHHHHHHHH
Q psy17080 398 VEFPAIVISIFILLKMGR-RRPLCLTTLGAGLACLMTLGFAP--G------------------SFITISLAMVGKFAISS 456 (565)
Q Consensus 398 ~~~~~~~~~~~l~dr~gr-r~~l~~~~~~~~~~~~~~~~~~~--~------------------~~~~~~~~~~~~~~~~~ 456 (565)
...+.+++..++.+|+|+ |+...++.++.++++........ + .+..++...+.|+....
T Consensus 317 ~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~ 396 (477)
T TIGR01301 317 VLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAI 396 (477)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHH
Confidence 556666777888999985 66667777777666665541110 0 14455566677888888
Q ss_pred HHHHHHHhcccccchh--hhhhHHHHHHHHHHHHHHHHHHHHH-HH---HhhhhhHHHHHHHHHHHHHHHH-hhcccCCC
Q psy17080 457 SNVIIPIYTAELFPTK--MRNLGVGASSVPAGVALILIPYLWH-MQ---SINIHFPMGLLGVVGVLGGLSV-LLLPDTTG 529 (565)
Q Consensus 457 ~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~lg~~i~p~i~~-~~---~~~~~~~~~~~~~~~~i~~~~~-~~l~et~~ 529 (565)
.+.+.++++++..|++ ..|..+|+.|++..+.+++..+... .. ..+....+.+.++.+++++++. +.+|+++.
T Consensus 397 ~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 397 TYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 8999999999999954 4589999999998888777665411 11 1234456677777777777765 66787653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-18 Score=174.56 Aligned_cols=311 Identities=11% Similarity=0.055 Sum_probs=201.2
Q ss_pred eeccccccCcchhhHHHHHHHHHHHhhhhhhhhccccc----ccch-hhHHHHHHHHHHHHHHHHhcch------hHHHH
Q psy17080 144 ISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDK----FGRK-KALMGSLVFQLVLGVLVAISPW------FELYL 212 (565)
Q Consensus 144 ~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr----~Grr-~~l~~~~~l~~~~~~~~~~~~~------~~~l~ 212 (565)
.+++++ +...+|++.++..+..++..|+.|.++|| +||| +.++.+.+..+++.++....++ +..++
T Consensus 37 t~~~gl---s~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~ 113 (444)
T PRK09669 37 TDVFGL---SAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYAC 113 (444)
T ss_pred HHhcCC---CHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence 356788 88999999999999999999999999998 7875 5555677777777665555543 45566
Q ss_pred HHHHHHhhhhhhhHhhhhhhhcccc-ccchhHHHHHHhhhhhHHHHHHHHHHH----HHh------cchhHHHHHHHHHH
Q psy17080 213 VVRFFLGFFCVSIVFSGFVLCMELV-GGKWLTIMGVMYLFPVPVGYIAISGIA----YYS------HNWRLLQWVITIPT 281 (565)
Q Consensus 213 ~~r~l~G~~~~~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~lG~~~~~~l~----~~~------~~Wr~~~~~~~~~~ 281 (565)
+..++.+.+.........++..|+. ++++|++..++...+..+|..+++.+. ... .+|+..+.+.++.+
T Consensus 114 ~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~ 193 (444)
T PRK09669 114 VTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLG 193 (444)
T ss_pred HHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence 6677777776777777778999998 468899887777777777666654432 222 26787777777665
Q ss_pred HHHHHH-hhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHH
Q psy17080 282 IFFLTL-WWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLIS 360 (565)
Q Consensus 282 ~~~~~~-~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 360 (565)
++..+. ++..+|.++. . ++++.+....++.++|+|.++...
T Consensus 194 ~v~~~~~~~~~~e~~~~----~----------------------------------~~~~~~~~~~~~~~~~n~~~~~l~ 235 (444)
T PRK09669 194 VVLFFCCFFMTKERYTP----E----------------------------------VDNSSSVWKDLKLLLGNSQWRIMF 235 (444)
T ss_pred HHHHHHHhCCeEEecCC----C----------------------------------CcCCCCHHHHHHHHhCCchHHHHH
Confidence 554443 3444543110 0 000011123456778898888776
Q ss_pred HHHHHHHHHHHHhhhhhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcC
Q psy17080 361 FVQYIIWFSVYLVYYGLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFA 437 (565)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~ 437 (565)
+..++.+...........++......+. ........+..+++.++.+++.||+|+|+.+..+.++.++..+.+....
T Consensus 236 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~ 315 (444)
T PRK09669 236 IFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP 315 (444)
T ss_pred HHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC
Confidence 6555444433222111122222211111 1222233455667788889999999999998887766554443333232
Q ss_pred Cch-HHHHHHHHHHHHHHHHHHHHHHHhcccccch-------hhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 438 PGS-FITISLAMVGKFAISSSNVIIPIYTAELFPT-------KMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 438 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
+++ +...+..++.+++.+...+..+++.+|..+. +..|...|+.+++..+|..++|.+
T Consensus 316 ~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i 381 (444)
T PRK09669 316 PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAV 381 (444)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 333 4455566778888888888999999988752 234566788888888999888887
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-18 Score=169.51 Aligned_cols=350 Identities=15% Similarity=0.184 Sum_probs=235.0
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhccccccc-chhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFG-RKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFL 218 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~G-rr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~ 218 (565)
.+...++-++ +..++|++.++..+...++++++|.++||++ +|+++.+..++.++..+...+.++++.+++..++.
T Consensus 25 ~~~~L~~~G~---s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~ 101 (400)
T PF03825_consen 25 LPLYLESRGF---SGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLF 101 (400)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3445566677 8899999999999999999999999999986 57788788888888777778889999988888888
Q ss_pred hhhhhhhHhhhhhhhccccccc--hhHHHHHHhhhhhHHHHHH-HHHHHHHh--cchhHHHHHHHHHHHHHHHHhhhccc
Q psy17080 219 GFFCVSIVFSGFVLCMELVGGK--WLTIMGVMYLFPVPVGYIA-ISGIAYYS--HNWRLLQWVITIPTIFFLTLWWIMPE 293 (565)
Q Consensus 219 G~~~~~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~lG~~~-~~~l~~~~--~~Wr~~~~~~~~~~~~~~~~~~~~pe 293 (565)
.+......|...++..+....+ +-|+.=.+-+.++.++... +..+.... .+....+++.+...++.....+.+|+
T Consensus 102 ~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~ 181 (400)
T PF03825_consen 102 SFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPK 181 (400)
T ss_pred HHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCC
Confidence 8888888888888888777532 2243333334444444332 11122221 12234555555555555555566787
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHh
Q psy17080 294 SPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLV 373 (565)
Q Consensus 294 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 373 (565)
.|+- ++ .++..++....+..+++|+|++...++..++........
T Consensus 182 ~~~~----~~-------------------------------~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~ 226 (400)
T PF03825_consen 182 TPPK----RS-------------------------------AKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAY 226 (400)
T ss_pred Cccc----cc-------------------------------cCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 7520 00 000011111223457899999888777777666666666
Q ss_pred hhhhhhccCcCCC-c---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHH--
Q psy17080 374 YYGLVLNLSNIGG-D---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLA-- 447 (565)
Q Consensus 374 ~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 447 (565)
|.....+.++.++ . ......+..+.|++.....+++.+|+|.|+++.++.+..++=..++....++.+......
T Consensus 227 ~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l 306 (400)
T PF03825_consen 227 YTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLL 306 (400)
T ss_pred HHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 6556666766662 2 233445666789999999999999999999999999998888888773323333333332
Q ss_pred --HHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHH-HHHHHHHHHHH--HHHHHhhhh------hHHHHHHHHHHH
Q psy17080 448 --MVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVP-AGVALILIPYL--WHMQSINIH------FPMGLLGVVGVL 516 (565)
Q Consensus 448 --~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~-~~lg~~i~p~i--~~~~~~~~~------~~~~~~~~~~~i 516 (565)
.+-++.++..+.....|+.+..|++.|+++.|+.+.. ..+|..++.++ ...+..+.. ..+.+.+++.++
T Consensus 307 ~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~ 386 (400)
T PF03825_consen 307 GQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALV 386 (400)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHH
Confidence 3468888888889999999999999999999998765 56888888777 334444433 334445555444
Q ss_pred HHHHH-hhcccC
Q psy17080 517 GGLSV-LLLPDT 527 (565)
Q Consensus 517 ~~~~~-~~l~et 527 (565)
..++. ++.+|+
T Consensus 387 ~~~~f~~~fk~~ 398 (400)
T PF03825_consen 387 ILVLFVILFKPK 398 (400)
T ss_pred HHHHHHhhccCC
Confidence 44433 344443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-17 Score=166.61 Aligned_cols=347 Identities=14% Similarity=0.077 Sum_probs=236.3
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHH-HHHHHHHHHHHHHHhc-c-hhHHHHHHHHHHhhhhhhhHhhh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALM-GSLVFQLVLGVLVAIS-P-WFELYLVVRFFLGFFCVSIVFSG 229 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~-~~~~l~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~~~~~~~~ 229 (565)
.....++..++..+-.++..|+.|.++|+-|+||.++ +..++..+++++..+. + +++...+.-++.-++.+...+..
T Consensus 68 ~~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfy 147 (477)
T PF11700_consen 68 TSSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFY 147 (477)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788899999999999999999999988776554 4555556677776664 3 45555556666667888888888
Q ss_pred hhhhccccccchh--------------------------HHHHHHhhhhhHHHHHHHHHHHHHh----c-------chhH
Q psy17080 230 FVLCMELVGGKWL--------------------------TIMGVMYLFPVPVGYIAISGIAYYS----H-------NWRL 272 (565)
Q Consensus 230 ~~~i~e~~~~~~r--------------------------~~~~~~~~~~~~lG~~~~~~l~~~~----~-------~Wr~ 272 (565)
.+++.|..+++.+ ++.++.-.....+|.++.-.+.... . +-|.
T Consensus 148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~ 227 (477)
T PF11700_consen 148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRV 227 (477)
T ss_pred HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhH
Confidence 9999999999888 8888877776677776655444332 1 2477
Q ss_pred HHHHHHHHHH-HHHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhcc
Q psy17080 273 LQWVITIPTI-FFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLW 351 (565)
Q Consensus 273 ~~~~~~~~~~-~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 351 (565)
.+.+.++.-+ ..+..++++||.|+....+......+...+++ ...++++.
T Consensus 228 ~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l-----------------------------~~t~k~~~ 278 (477)
T PF11700_consen 228 AFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRL-----------------------------WRTFKEIR 278 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHH-----------------------------HHHHHHHH
Confidence 7777666644 44455677888765200011111111111111 11344555
Q ss_pred ccHHHHHHHHHHHHHHHH-HHHhhhhhhhccCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCCh--HHHHHHHHH
Q psy17080 352 RTPLIRLISFVQYIIWFS-VYLVYYGLVLNLSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRR--RPLCLTTLG 425 (565)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr--~~l~~~~~~ 425 (565)
|.|.+.+.++..++..-. .........+..+.++.+ .....++..+..++|.++.+++.||+|.| +++..+.++
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLIL 358 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 666666655554433222 223333333333344433 33455566788899999999999999998 777766666
Q ss_pred HHHHHHHHhhc--------CCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHH-
Q psy17080 426 AGLACLMTLGF--------APGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLW- 496 (565)
Q Consensus 426 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~- 496 (565)
..+..+... + ..+.+.+.++.++.+++.+...+..-++.+|+.|++..+..+|+..+.+...++++|++.
T Consensus 359 ~~~i~~~g~-~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g 437 (477)
T PF11700_consen 359 WIIIPLYGL-FGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFG 437 (477)
T ss_pred HHHHHHHHH-HHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 544433333 2 345577888888999999999999999999999999999999999999999999999993
Q ss_pred -HHHHh-hhhhHHHHHHHHHHHHHHHHhhcccCCC
Q psy17080 497 -HMQSI-NIHFPMGLLGVVGVLGGLSVLLLPDTTG 529 (565)
Q Consensus 497 -~~~~~-~~~~~~~~~~~~~~i~~~~~~~l~et~~ 529 (565)
..+.. +.+..+....++.+++.++...++..|+
T Consensus 438 ~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g 472 (477)
T PF11700_consen 438 LITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKG 472 (477)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhh
Confidence 23333 3667788888888888888888877665
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.1e-18 Score=176.27 Aligned_cols=315 Identities=11% Similarity=0.083 Sum_probs=199.8
Q ss_pred eccccccCcchhhHHHHHHHHHHHhhhhhhhhcccc----cccc-hhhHHHHHHHHHHHHHHHHhcch------hHHHHH
Q psy17080 145 SEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSD----KFGR-KKALMGSLVFQLVLGVLVAISPW------FELYLV 213 (565)
Q Consensus 145 ~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~D----r~Gr-r~~l~~~~~l~~~~~~~~~~~~~------~~~l~~ 213 (565)
+..++ +...+|.+..+..+--++..|+.|.++| |+|| |+.++.+.+..+++.+++...++ +..+++
T Consensus 35 ~v~Gl---s~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~ 111 (473)
T PRK10429 35 DVVGL---SVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCV 111 (473)
T ss_pred HhcCC---CHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 34577 8889999999999999999999999999 5699 55666777777777666544332 335556
Q ss_pred HHHHHhhhhhhhHhhhhhhhcccc-ccchhHHHHHHhhhhhHHHHHHHHHHHHH----h------cchhHHHHHHHHHHH
Q psy17080 214 VRFFLGFFCVSIVFSGFVLCMELV-GGKWLTIMGVMYLFPVPVGYIAISGIAYY----S------HNWRLLQWVITIPTI 282 (565)
Q Consensus 214 ~r~l~G~~~~~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~------~~Wr~~~~~~~~~~~ 282 (565)
..++.+++.....+...+++.|+. ++++|.+..++-..+..+|..+.+.+... . .+|+....+.++..+
T Consensus 112 ~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~ 191 (473)
T PRK10429 112 TYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFI 191 (473)
T ss_pred HHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence 667778888888888889999999 58999998888666666665554433221 1 146666666555544
Q ss_pred HHHHH-hhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHH
Q psy17080 283 FFLTL-WWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISF 361 (565)
Q Consensus 283 ~~~~~-~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 361 (565)
+..+. ++..+|.+.. .. + ..+++++.+.+..++.+++||.++..+.
T Consensus 192 ~~~~~~~~~~~e~~~~----~~--~---------------------------~~~~~~~~~~~~~~~~~~~n~~~~~ll~ 238 (473)
T PRK10429 192 VSTIITLRNVHEVYSS----DN--Q---------------------------VSAEGSHLTLKDIVALIYKNDQLSCLLG 238 (473)
T ss_pred HHHHHHHcCceecCCc----cc--c---------------------------ccccccCCCHHHHHHHHhcCHHHHHHHH
Confidence 43333 3445664210 00 0 0000000111223455678888877766
Q ss_pred HHHHHHHHHHHhhhhhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhh---
Q psy17080 362 VQYIIWFSVYLVYYGLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLG--- 435 (565)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~--- 435 (565)
..++.+...........++......+. .....+.++..+++.++.+++.||+|+|+.+.++..+..++.+.+..
T Consensus 239 ~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
T PRK10429 239 MALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGL 318 (473)
T ss_pred HHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666555443332222222322222222 22333445677888899999999999999988777765555444331
Q ss_pred cCCc-hHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----h--hhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 436 FAPG-SFITISLAMVGKFAISSSNVIIPIYTAELFP-----T--KMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 436 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-----~--~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
..++ .+...+..++.+++.+...+..+++.+|..+ + +..|..+|+.+++..+|..+++.+
T Consensus 319 ~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i 386 (473)
T PRK10429 319 AAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFF 386 (473)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 1222 2444455566777888888888888999855 2 224557788888888988888877
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-20 Score=197.65 Aligned_cols=274 Identities=13% Similarity=0.070 Sum_probs=188.3
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcc-------------
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISP------------- 206 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~------------- 206 (565)
.+++.++|++ ++.+.|++.+.+.++++++.++.|+++||+|||+.+.++.++++++++++++.+
T Consensus 56 l~~iek~F~l---ss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~ 132 (633)
T TIGR00805 56 LTTIERRFKL---STSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS 132 (633)
T ss_pred chhhhhhhCC---CCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence 6889999999 888899999999999999999999999999999999999999999999988753
Q ss_pred --------------------------------------hhHHHHHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHH
Q psy17080 207 --------------------------------------WFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVM 248 (565)
Q Consensus 207 --------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~ 248 (565)
.+..++++|+++|+|.+..++...+++.|++|+++|+++.++
T Consensus 133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i 212 (633)
T TIGR00805 133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGI 212 (633)
T ss_pred ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHH
Confidence 245678999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhc-------------------------chhHHHHHHHHHHHHHHHHhhhcccc-hhHHHhcC
Q psy17080 249 YLFPVPVGYIAISGIAYYSH-------------------------NWRLLQWVITIPTIFFLTLWWIMPES-PRWLVSMG 302 (565)
Q Consensus 249 ~~~~~~lG~~~~~~l~~~~~-------------------------~Wr~~~~~~~~~~~~~~~~~~~~pes-p~~l~~~~ 302 (565)
+..+..+|+++++.++..+. .||..|++.+++.++..+.++++|+. |+.. .+.
T Consensus 213 ~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~-~~~ 291 (633)
T TIGR00805 213 LESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEG-KRV 291 (633)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcc-ccc
Confidence 99999999999888775431 26667888777777666666667764 2210 000
Q ss_pred CHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhhhhhhcc-
Q psy17080 303 RNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNL- 381 (565)
Q Consensus 303 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 381 (565)
+.++.++. .. +....+...+ .....++....++.++++|.++...+..++............+.++
T Consensus 292 ~~~~~~~~--~~-~~~~~~~~~~----------~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~ 358 (633)
T TIGR00805 292 NVDVHETE--KL-EKSEDKSRKK----------NSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLE 358 (633)
T ss_pred chhhhhhh--cc-cccccccchh----------hhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 00 0000000000 0000001123467789999988887777666655444333333333
Q ss_pred CcCCCcHHHHHHHHH---H-HHHHHHHHHHHHHhhcCC--hHHHHHHHHHHHHHH
Q psy17080 382 SNIGGDVYLNTIISG---I-VEFPAIVISIFILLKMGR--RRPLCLTTLGAGLAC 430 (565)
Q Consensus 382 ~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~dr~gr--r~~l~~~~~~~~~~~ 430 (565)
..++.+......+.+ + +.+++.+++|+++||+++ |+.+.+++++..++.
T Consensus 359 ~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~ 413 (633)
T TIGR00805 359 NQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY 413 (633)
T ss_pred HHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence 345555444333332 2 346788999999999984 455555555555443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-17 Score=174.51 Aligned_cols=368 Identities=10% Similarity=-0.009 Sum_probs=212.5
Q ss_pred eeeccccccCcchhhHHHHHHHHHHHhhhhhhhhccccc-ccchhhHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHhh
Q psy17080 143 IISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDK-FGRKKALMGSLVFQLVLGVLVAISP-WFELYLVVRFFLGF 220 (565)
Q Consensus 143 i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr-~Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G~ 220 (565)
+.+++|+ +....+++.+.+........+++|+++|| +|||++++.+.++.+++.+++++++ +.+.+++.|++.|+
T Consensus 48 l~~~lg~---s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gi 124 (500)
T PRK09584 48 LVKQLGM---SEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAV 124 (500)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3467888 66667777777776666667789999999 5999999999999999999998874 56677788999999
Q ss_pred hhhhhHhhhhhhhccccccch--hHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHh----hhc
Q psy17080 221 FCVSIVFSGFVLCMELVGGKW--LTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLW----WIM 291 (565)
Q Consensus 221 ~~~~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~----~~~ 291 (565)
+.|...+...+++.|++|+++ |+.+.+++..+.++|..++|.++.++ .|||+.|++.++..++.++.+ ..+
T Consensus 125 g~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~ 204 (500)
T PRK09584 125 GNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWV 204 (500)
T ss_pred hhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 999888988999999998643 45577888889999999998887765 489999998775444433222 223
Q ss_pred ccchhHHHhcCCHHHHHHHH-----------HHHHHHcCCCCchhHHHHHHHH--hhhhccccCcccchhhccccHHHHH
Q psy17080 292 PESPRWLVSMGRNKEAMKIL-----------GDAAKFNSRKLPLNLEKLLKES--VLSTNQDVGKKVQVMDLWRTPLIRL 358 (565)
Q Consensus 292 pesp~~l~~~~~~~~a~~~l-----------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (565)
+|.++- ..+.+.+.....+ ......+. +............ ....... ....+.-|+|.+..
T Consensus 205 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 278 (500)
T PRK09584 205 KQYGSK-PDFEPINYRKLLLTIVGVVALIAIATWLLHNQ-EIARMALGVVALGIVVIFGKEA----FAMKGAARRKMIVA 278 (500)
T ss_pred ccCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHH----hhcCHHHHHHHHHH
Confidence 332110 0000111110000 00000000 0000000000000 0000000 00001111222111
Q ss_pred HHHHHHHHHHHHHHhhhhhhhc--------cC-c-CC--CcHHHHHHHHHHHHHHHHHHHHHH----HhhcCChHHHHHH
Q psy17080 359 ISFVQYIIWFSVYLVYYGLVLN--------LS-N-IG--GDVYLNTIISGIVEFPAIVISIFI----LLKMGRRRPLCLT 422 (565)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~--------~~-~-~~--~~~~~~~~~~~~~~~~~~~~~~~l----~dr~grr~~l~~~ 422 (565)
.. .++........|...+.. .+ . .+ ........+.++..++..++..++ .+|.+.++.+.++
T Consensus 279 ~~--~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G 356 (500)
T PRK09584 279 FI--LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIG 356 (500)
T ss_pred HH--HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHH
Confidence 11 111111111122111111 10 1 11 123344445555555555555444 4444455677888
Q ss_pred HHHHHHHHHHHhhcCC--------chHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHH
Q psy17080 423 TLGAGLACLMTLGFAP--------GSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPY 494 (565)
Q Consensus 423 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~ 494 (565)
+++.+++++.+..... +.++.+...++.+++.....|....++.+..|++.||.++|+..+...+|+.++..
T Consensus 357 ~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~ 436 (500)
T PRK09584 357 MVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGY 436 (500)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777652211 12456666778889999999999999999999999999999887777777666655
Q ss_pred HHHH------------HHhhhhhHHHHHHHHHHHHHHHH
Q psy17080 495 LWHM------------QSINIHFPMGLLGVVGVLGGLSV 521 (565)
Q Consensus 495 i~~~------------~~~~~~~~~~~~~~~~~i~~~~~ 521 (565)
+... ...++...|...++.+++.+++.
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~ 475 (500)
T PRK09584 437 VANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLM 475 (500)
T ss_pred HHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 5211 01124566666666655444433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-16 Score=149.97 Aligned_cols=333 Identities=16% Similarity=0.151 Sum_probs=245.3
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.+.|.+|+++ +....|+++++..+...+.+++..+++.|+|.++.+..++++.+++.++-... +.+.++.+-.+.|
T Consensus 35 L~~Ir~~~gl---s~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G 110 (395)
T COG2807 35 LDEIRQDLGL---SFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAG 110 (395)
T ss_pred HHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHH
Confidence 6788999999 89999999999999999999999999999999999999999999999998887 7888999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHHHHHhhhcccch
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYY----SHNWRLLQWVITIPTIFFLTLWWIMPESP 295 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~~~Wr~~~~~~~~~~~~~~~~~~~~pesp 295 (565)
.|.+...+..+.++.+.+| |+-+..++++.+...+|..+++.++.. ..+||....+.++++++.++.|+. ...
T Consensus 111 ~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP--q~~ 187 (395)
T COG2807 111 AGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP--QAL 187 (395)
T ss_pred hhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh--hcc
Confidence 9999999999999999996 456888888888888877776655543 358999999999999888887752 211
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhh
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYY 375 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (565)
| .+ ....+.+..+-..++|+|.-|...+.+.+..+..+...-
T Consensus 188 r-----~~---------------------------------~~~~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~ 229 (395)
T COG2807 188 R-----EQ---------------------------------AASIATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIG 229 (395)
T ss_pred c-----cc---------------------------------ccccccccccccccccCchhHHHHHHHHhhHHHHHHHHH
Confidence 1 00 001111222345589999988888877766666555555
Q ss_pred hhhhccCcCCCcHH---HHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q psy17080 376 GLVLNLSNIGGDVY---LNTIISGIVEFPAIVISIFILLKM-GRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGK 451 (565)
Q Consensus 376 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~dr~-grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (565)
.++-...+.+.+.. ....+..+++++..+....+.+|. .+|+..+....++.++.+.+. +.|....... +++.|
T Consensus 230 WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~-~~P~~~~~lw-~~llG 307 (395)
T COG2807 230 WLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLL-LAPGQLPILW-ALLLG 307 (395)
T ss_pred HHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-HhhhhHHHHH-HHHHh
Confidence 55555555555543 444566678888999999999975 456666666666666666665 4454422222 57788
Q ss_pred HHHHHHHHHHHHhcccccch-hhhhhHHHHHHHHHHHHHHHHHHHH--HHHHh-hhhhHHHHHHHHHHHHHH
Q psy17080 452 FAISSSNVIIPIYTAELFPT-KMRNLGVGASSVPAGVALILIPYLW--HMQSI-NIHFPMGLLGVVGVLGGL 519 (565)
Q Consensus 452 ~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~~~~lg~~i~p~i~--~~~~~-~~~~~~~~~~~~~~i~~~ 519 (565)
++.+..++...+++....+. +..+.-.|+.+.++++-..++|++. ..|.. ++..++..+....++..+
T Consensus 308 ~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i 379 (395)
T COG2807 308 LGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLI 379 (395)
T ss_pred CccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 89999999988887776654 3456667788888888888999983 33433 455555555554444333
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-17 Score=170.86 Aligned_cols=363 Identities=13% Similarity=0.004 Sum_probs=226.3
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhccccccc-----chhhHHHHHHHHH-HHHHHHHhcchhHHH-H
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFG-----RKKALMGSLVFQL-VLGVLVAISPWFELY-L 212 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~G-----rr~~l~~~~~l~~-~~~~~~~~~~~~~~l-~ 212 (565)
.+-+.+++++ +..+++...+...+...+-.+ +|+++||++ ||+.++++.++.+ ++....+..++.... .
T Consensus 49 ~~~l~~~lg~---s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~ 124 (468)
T TIGR00788 49 SPMLTDDLGL---DGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAA 124 (468)
T ss_pred hHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 4555667899 888898999999999999776 999999998 7777787777663 443444444554444 4
Q ss_pred HHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhh---hHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHH
Q psy17080 213 VVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFP---VPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLT 286 (565)
Q Consensus 213 ~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~---~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~ 286 (565)
+.+++.+++.+...++.-++..|..+ +++....+..... ..+|.++++.+++.+ .+||..|++.++..++..+
T Consensus 125 ~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~ 203 (468)
T TIGR00788 125 AFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLF 203 (468)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 48899999999999999999999998 5554433333332 346777777666553 3799999998877766666
Q ss_pred HhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHH
Q psy17080 287 LWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYII 366 (565)
Q Consensus 287 ~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 366 (565)
..+++||++.....+.+.++ ...... ..... .. . .++...+.++.+++|.+++.++..++.
T Consensus 204 ~~~~~~E~~~~~~~~~~~~~-~~~~~~--------~~~~~---~~-~------~~~~~~~l~~~l~~~~i~~~l~fifl~ 264 (468)
T TIGR00788 204 VSNLSKERRAFVRPRIGTYL-EMNMAL--------LTLGV---LA-N------VKVQILGLRGAIQLLEIAKPLIFIFLS 264 (468)
T ss_pred HHHhcccccccccccccccc-hhhhhh--------hhhhH---HH-H------HHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 66778886310000000000 000000 00000 00 0 000011244456777777655544441
Q ss_pred HH-HHHHhhhhhhhccCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcC-----
Q psy17080 367 WF-SVYLVYYGLVLNLSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFA----- 437 (565)
Q Consensus 367 ~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~----- 437 (565)
+. ..........+.....+.+ .+......+++++++..+.+++.+|++.|+.+.++.++.+++.+......
T Consensus 265 ~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~ 344 (468)
T TIGR00788 265 YANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNL 344 (468)
T ss_pred HhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeecccc
Confidence 11 1111111111112233333 34555667788889999999999999999999998888887765432111
Q ss_pred ----CchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhh-----hhhH
Q psy17080 438 ----PGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSIN-----IHFP 506 (565)
Q Consensus 438 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~-----~~~~ 506 (565)
++.+......++.+++.+..+.....++.+..|++.+++..++.+.+.++|..+++.+ ...+..+ +...
T Consensus 345 ~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~ 424 (468)
T TIGR00788 345 AFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNL 424 (468)
T ss_pred ccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccch
Confidence 2223334445666777777788889999999999999999999999999999999976 2233334 4433
Q ss_pred HHHHHH---HHHHHHHHHhhccc
Q psy17080 507 MGLLGV---VGVLGGLSVLLLPD 526 (565)
Q Consensus 507 ~~~~~~---~~~i~~~~~~~l~e 526 (565)
+.+..+ ..++...+..++|+
T Consensus 425 ~~~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 425 WLLILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 433333 33333444456776
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-16 Score=163.96 Aligned_cols=310 Identities=10% Similarity=0.103 Sum_probs=191.6
Q ss_pred eeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccc----cchhhH-HHHHHHHHHHHHHHH-h----cc--hhHH
Q psy17080 143 IISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKF----GRKKAL-MGSLVFQLVLGVLVA-I----SP--WFEL 210 (565)
Q Consensus 143 i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~----Grr~~l-~~~~~l~~~~~~~~~-~----~~--~~~~ 210 (565)
+.+.+++ +..++|++.+...+..++..++.|.++||. |||+.. +.+.+...+..++.. . ++ ....
T Consensus 35 ~~~~~gl---~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (448)
T PRK09848 35 YTDVAGV---GAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVY 111 (448)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHH
Confidence 3445677 888999999999999999999999999996 777654 555554544444432 1 11 1233
Q ss_pred HHHHHHHHhhhhhhhHhhhhhhhcccccc-chhHHHHHHhhhhhH-----HHHHHHHHHHHHhc-----chhHHHHHHHH
Q psy17080 211 YLVVRFFLGFFCVSIVFSGFVLCMELVGG-KWLTIMGVMYLFPVP-----VGYIAISGIAYYSH-----NWRLLQWVITI 279 (565)
Q Consensus 211 l~~~r~l~G~~~~~~~~~~~~~i~e~~~~-~~r~~~~~~~~~~~~-----lG~~~~~~l~~~~~-----~Wr~~~~~~~~ 279 (565)
+++..++.+++.+...+...++..|..++ ++|.+..++-..+.+ +|..++|.++.... +|.....+.++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v 191 (448)
T PRK09848 112 AYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAI 191 (448)
T ss_pred HHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 44556677888777777777777777654 678877666554433 44445555554432 12211222222
Q ss_pred HHHHHH-HHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHH
Q psy17080 280 PTIFFL-TLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRL 358 (565)
Q Consensus 280 ~~~~~~-~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (565)
.+++.. +.....||++.. +.++......++.++|+|.++.
T Consensus 192 ~~~~~~~~~~~~~~e~~~~---------------------------------------~~~~~~~~~~~~~l~~n~~f~~ 232 (448)
T PRK09848 192 AGMVLYFICFKSTRENVVR---------------------------------------IVAQPSLKISLQTLKRNRPLFM 232 (448)
T ss_pred HHHHHHHHHHcCcEeccCC---------------------------------------CccCCCHHHHHHHHhCCchHHH
Confidence 222222 223334554210 0000011223567889999887
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCc-CCCcHHHH--HHH-HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHh
Q psy17080 359 ISFVQYIIWFSVYLVYYGLVLNLSN-IGGDVYLN--TII-SGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTL 434 (565)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~-~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~ 434 (565)
..+..++.+..........+++.+. ++.+.... ... ..+..+++.++.+++.||+|+|+.+.++.++.+++.+.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~ 312 (448)
T PRK09848 233 LCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFF 312 (448)
T ss_pred HHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 7776666555444333333333332 23222211 112 2345667788899999999999999999888777776665
Q ss_pred hcCC-ch-HHHHHHHHHHHHHHHHHHHHHHHhcccccchh-------hhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 435 GFAP-GS-FITISLAMVGKFAISSSNVIIPIYTAELFPTK-------MRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 435 ~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
+.+ .. +...+..++.+++.+...+...+..+|..|.+ .+|...|+.++...+|..+++.+
T Consensus 313 -~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i 381 (448)
T PRK09848 313 -WVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSI 381 (448)
T ss_pred -HcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 333 22 44444456677888888888888888887654 35888899999999999998877
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-17 Score=168.40 Aligned_cols=312 Identities=15% Similarity=0.177 Sum_probs=223.5
Q ss_pred eccccccCcchhhHHHHHHHHHHHhhhhhhhhcccc----cccchh-hHHHHHHHHHHHHHHHHhc-c-------hhHHH
Q psy17080 145 SEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSD----KFGRKK-ALMGSLVFQLVLGVLVAIS-P-------WFELY 211 (565)
Q Consensus 145 ~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~D----r~Grr~-~l~~~~~l~~~~~~~~~~~-~-------~~~~l 211 (565)
+..++ +....|++..+..+-.++..|+.|.++| |+|||| .++.+.++.+++.+++... + ...++
T Consensus 30 ~~~gl---~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~ 106 (428)
T PF13347_consen 30 DVLGL---SPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWL 106 (428)
T ss_pred HHcCC---CHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHH
Confidence 44577 7888999999999999999999999999 799766 4556778888887777765 4 23345
Q ss_pred HHHHHHHhhhhhhhHhhhhhhhccccc-cchhHHHHHHhhhhhHHHHHHHHHHHHH----hc------chhHHHHHHHHH
Q psy17080 212 LVVRFFLGFFCVSIVFSGFVLCMELVG-GKWLTIMGVMYLFPVPVGYIAISGIAYY----SH------NWRLLQWVITIP 280 (565)
Q Consensus 212 ~~~r~l~G~~~~~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~~------~Wr~~~~~~~~~ 280 (565)
.+..++..++.........++..|..+ +++|.+..+.-..+..+|.++.+.+... .. +|++..++.+++
T Consensus 107 ~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv 186 (428)
T PF13347_consen 107 FVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIV 186 (428)
T ss_pred HHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHH
Confidence 777777788888888888999999998 5789999999888888888654433322 21 689988888777
Q ss_pred HHHHHHH-hhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHH
Q psy17080 281 TIFFLTL-WWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLI 359 (565)
Q Consensus 281 ~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 359 (565)
.++..+. .+..+|.++ +.++++++.+-+..+++++++|.++..
T Consensus 187 ~~v~~~i~~~~~ke~~~------------------------------------~~~~~~~~~~~~~~~~~~~~nr~~~~l 230 (428)
T PF13347_consen 187 GLVFFLITFFFVKERSV------------------------------------EVTEQEKKISLRDSLRSLFRNRPFRIL 230 (428)
T ss_pred HHHHhhhhhheeeeccc------------------------------------cccccccccccccchhhhcccchHHHH
Confidence 6665554 455666210 000111122234457888999998888
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCc-CC--CcHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhc
Q psy17080 360 SFVQYIIWFSVYLVYYGLVLNLSN-IG--GDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF 436 (565)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~ 436 (565)
....++.++..........++.+. .+ ........+..+..+++.++.+++.||+|+|+.+..+.++.+++.+++...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~ 310 (428)
T PF13347_consen 231 LLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFL 310 (428)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHH
Confidence 877776665443322112221111 11 122333445567778889999999999999999999999998888877733
Q ss_pred C-CchHHHHHHHHHHHHHHHHHHHHHHHhcccccchh-------hhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 437 A-PGSFITISLAMVGKFAISSSNVIIPIYTAELFPTK-------MRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 437 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
. .+.+...+..++.+++.+..+...+++.+|+.+.+ ..|...|+.++...++..+++.+
T Consensus 311 ~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i 377 (428)
T PF13347_consen 311 GPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAI 377 (428)
T ss_pred HhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHH
Confidence 3 35577777788889999998899999999988743 34777888888888888888776
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.9e-16 Score=152.54 Aligned_cols=314 Identities=14% Similarity=0.147 Sum_probs=218.0
Q ss_pred eccccccCcchhhHHHHHHHHHHHhhhhhhhhccccc----ccch-hhHHHHHHHHHHHHHHHHhcch------hHHHHH
Q psy17080 145 SEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDK----FGRK-KALMGSLVFQLVLGVLVAISPW------FELYLV 213 (565)
Q Consensus 145 ~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr----~Grr-~~l~~~~~l~~~~~~~~~~~~~------~~~l~~ 213 (565)
+.+++ +...+|.+..+--+--++.-|+.|.++|| +||+ +-++.+.+..++.+.++-.+++ ....++
T Consensus 41 dv~Gi---s~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~v 117 (467)
T COG2211 41 DVFGL---SAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALV 117 (467)
T ss_pred cccCC---cHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHH
Confidence 34677 77888888888888888999999999995 8875 4566677888888888887764 445667
Q ss_pred HHHHHhhhhhhhHhhhhhhhccccc-cchhHHHHHHhhhhhHHHHHHHHHHHH----Hh------cchhHHHHHHHHHHH
Q psy17080 214 VRFFLGFFCVSIVFSGFVLCMELVG-GKWLTIMGVMYLFPVPVGYIAISGIAY----YS------HNWRLLQWVITIPTI 282 (565)
Q Consensus 214 ~r~l~G~~~~~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~lG~~~~~~l~~----~~------~~Wr~~~~~~~~~~~ 282 (565)
.-.+.+++.......-.++..|+.+ ++||.+..++-+.+..+|.++...+.. .+ .+|+....+.++.++
T Consensus 118 tY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~ 197 (467)
T COG2211 118 TYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGV 197 (467)
T ss_pred HHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHH
Confidence 7889999999888888899999986 789999999999988888766443332 21 267777777777766
Q ss_pred HHHHHh-hhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHH
Q psy17080 283 FFLTLW-WIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISF 361 (565)
Q Consensus 283 ~~~~~~-~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 361 (565)
+..+.. +-+.|.+. ++ ...++..+.+.+..+..+++|+.++...+
T Consensus 198 i~~l~~~~~v~ER~~---------~~-------------------------~~~~~~~~~~~~~~~~~~~~Nrp~~~~l~ 243 (467)
T COG2211 198 ILLLFCFFNVKERVV---------ET-------------------------QPTKTGVKLKLKDSFLLIFKNRPLLLLLL 243 (467)
T ss_pred HHHHHHHHHhhcccC---------cc-------------------------ccCcccccccHHHHHHHHHccchHHHHHH
Confidence 655543 33455421 00 00000011112223456789999888887
Q ss_pred HHHHHHHHHHHhh----hhhhhccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcC
Q psy17080 362 VQYIIWFSVYLVY----YGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFA 437 (565)
Q Consensus 362 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~ 437 (565)
..++.+....... |...+.++.............+...+++.++...+.+|+|+|+++.++.++..++.+++....
T Consensus 244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~ 323 (467)
T COG2211 244 MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP 323 (467)
T ss_pred HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc
Confidence 6666555433322 223333333333344455555566677788999999999999999999999999988888333
Q ss_pred Cch-HHHHHHHHHHHHHHHHHHHHHHHhcccccch-------hhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 438 PGS-FITISLAMVGKFAISSSNVIIPIYTAELFPT-------KMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 438 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
.+. +..++..++.+++.+...+..+++.+|...- +.-|...|...++..+|..++..+
T Consensus 324 ~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~ 389 (467)
T COG2211 324 AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI 389 (467)
T ss_pred CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 333 4555555788899999999999999987533 223666778888888888777665
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-15 Score=147.80 Aligned_cols=345 Identities=13% Similarity=0.113 Sum_probs=209.5
Q ss_pred cccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHH--HHHHHH-Hhc----chhH-HHHHHHHHH
Q psy17080 147 WDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQL--VLGVLV-AIS----PWFE-LYLVVRFFL 218 (565)
Q Consensus 147 ~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~--~~~~~~-~~~----~~~~-~l~~~r~l~ 218 (565)
-|+ +..++|.+.++..+...+.+|+.|.++||+|.||-++....... .+.+.. .+. .|.+ ..+++-+..
T Consensus 38 ~GL---s~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l 114 (412)
T PF01306_consen 38 AGL---SGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYL 114 (412)
T ss_dssp H------HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTT
T ss_pred cCC---CHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577 88999999999999999999999999999997765544332222 222221 222 2322 233334445
Q ss_pred hhhhhhhHhhhhhhhccccccc--hhHHHHHHhhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhh-cccch
Q psy17080 219 GFFCVSIVFSGFVLCMELVGGK--WLTIMGVMYLFPVPVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWI-MPESP 295 (565)
Q Consensus 219 G~~~~~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~lG~~~~~~l~~~~~~Wr~~~~~~~~~~~~~~~~~~~-~pesp 295 (565)
|++..+..++.-+++.++...+ +-|++=.+-+.++.++..+++.+... +-...|++....+++..++.++ -|+.+
T Consensus 115 ~~~f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i--~p~~~fwi~s~~~~il~lll~~~~~~~~ 192 (412)
T PF01306_consen 115 GLVFNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFNI--NPNIIFWIASAAAIILLLLLLLLKPDVP 192 (412)
T ss_dssp TTTTTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHSS---SS
T ss_pred HHHHcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeeee--CccHHHHHHHHHHHHHHHHHHHcCCcCc
Confidence 5555666666666666655322 23555555555555555555444332 3456677666555554444333 33332
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhh-
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVY- 374 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 374 (565)
+.....+ ...+++++.+..+..+++|+|++|...+.....+.......
T Consensus 193 ~~~~~~~-------------------------------~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdq 241 (412)
T PF01306_consen 193 PQAEVAD-------------------------------ALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQ 241 (412)
T ss_dssp SSS-SST-------------------------------TSSS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhc-------------------------------ccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 1000000 00000001111235678999999887776665544333221
Q ss_pred ----hhhhhc-cCcCCCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHH
Q psy17080 375 ----YGLVLN-LSNIGGD-VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAM 448 (565)
Q Consensus 375 ----~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (565)
|...++ .++.+.. .+....+..+.|++...+..++.+|+|.|+.++++..++.+=.+... +.++.+.....-.
T Consensus 242 qf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~-~~~~~~~i~~~kl 320 (412)
T PF01306_consen 242 QFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSG-FATNPWVISLIKL 320 (412)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-T--SHHHHHHHHH
T ss_pred HHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHh-hhcchHHHHHHHH
Confidence 111111 1111222 22334455678899999999999999999999999999998888887 7788888888888
Q ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhHHHHH-HHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHH-hhc
Q psy17080 449 VGKFAISSSNVIIPIYTAELFPTKMRNLGVGAS-SVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSV-LLL 524 (565)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~-~~l 524 (565)
+-++..........-|+++.+|++..++...+. ++..++|.++.+.+ ...++.|+...|++++.+.++..++. +.+
T Consensus 321 LH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l 400 (412)
T PF01306_consen 321 LHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTL 400 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeee
Confidence 888888888888899999999999988888886 56667777766555 55788888888988888877766655 455
Q ss_pred ccCC
Q psy17080 525 PDTT 528 (565)
Q Consensus 525 ~et~ 528 (565)
++.+
T Consensus 401 ~~~~ 404 (412)
T PF01306_consen 401 KKDK 404 (412)
T ss_dssp --SS
T ss_pred cCCC
Confidence 5443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-14 Score=149.43 Aligned_cols=308 Identities=9% Similarity=0.032 Sum_probs=187.7
Q ss_pred eccccccCcchhhHHHHHHHHHHHhhhhhhhhccccc----ccchhh-HHHHHHHHHHHHHHHHhcch------hHHHHH
Q psy17080 145 SEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDK----FGRKKA-LMGSLVFQLVLGVLVAISPW------FELYLV 213 (565)
Q Consensus 145 ~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr----~Grr~~-l~~~~~l~~~~~~~~~~~~~------~~~l~~ 213 (565)
+..++ +...+|++..+.-+--++.-|+.|.++|| +||||. ++++.+..+++.+++-..++ ...+++
T Consensus 38 ~~~Gl---~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~ 114 (460)
T PRK11462 38 DIFGI---PAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAI 114 (460)
T ss_pred HhhCC---CHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHH
Confidence 34577 78888999999999999999999999996 798654 55566777777766654443 345566
Q ss_pred HHHHHhhhhhhhHhhhhhhhccccc-cchhHHHHHHhhhhhHHHHHHHHHHHHH----h------cchhHHHHHHHHHHH
Q psy17080 214 VRFFLGFFCVSIVFSGFVLCMELVG-GKWLTIMGVMYLFPVPVGYIAISGIAYY----S------HNWRLLQWVITIPTI 282 (565)
Q Consensus 214 ~r~l~G~~~~~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~------~~Wr~~~~~~~~~~~ 282 (565)
.-++..++.......-.++..|..+ +++|++..++...+..+|..+++.+... . .+|+....+.+++.+
T Consensus 115 ~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~ 194 (460)
T PRK11462 115 TYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAF 194 (460)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence 6677788888888888899999987 7899999999998888887766554322 1 257776666666655
Q ss_pred HHHHH-hhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHH
Q psy17080 283 FFLTL-WWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISF 361 (565)
Q Consensus 283 ~~~~~-~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 361 (565)
+.... ++..+|.++- +.++...+..++.+++++.++....
T Consensus 195 i~~~i~~~~~kE~~~~---------------------------------------~~~~~~~~~~l~~~~~Nk~~~~l~~ 235 (460)
T PRK11462 195 MMLAFCFFTTKERVEA---------------------------------------PPTTTSMREDLRDIWQNDQWRIVGL 235 (460)
T ss_pred HHHHHHHhcceeccCC---------------------------------------CccCCCHHHHHHHHhCChHHHHHHH
Confidence 54433 3334443210 0000001223556778888776655
Q ss_pred HHHHHHHHHH----HhhhhhhhccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcC
Q psy17080 362 VQYIIWFSVY----LVYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFA 437 (565)
Q Consensus 362 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~ 437 (565)
..++.+.... ...|...+.... ...........++..+++.++++++.||+++|+.+..+..+.++..+++....
T Consensus 236 ~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~ 314 (460)
T PRK11462 236 LTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVP 314 (460)
T ss_pred HHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc
Confidence 4443333221 111222222211 11112233445567778889999999999999887655544444333333122
Q ss_pred Cch-HHHHHHHHHHHHHHHHHHHHHHHhcccccc-----hhhhh--hHHHHHHHHHHHHHHHHHHH
Q psy17080 438 PGS-FITISLAMVGKFAISSSNVIIPIYTAELFP-----TKMRN--LGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 438 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-----~~~r~--~~~g~~~~~~~lg~~i~p~i 495 (565)
... +...+..++.+++.+...+..+++.+|... +..|. ...+..+....+|..+++.+
T Consensus 315 ~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i 380 (460)
T PRK11462 315 MQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGAL 380 (460)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 222 233334445566666655666667776654 22343 44455567777777777766
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-15 Score=142.82 Aligned_cols=343 Identities=14% Similarity=0.086 Sum_probs=233.2
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhH-HHHHHHHHHHHHHHHhcch--hH-HHHHHHHHHhhhhhhhHhh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKAL-MGSLVFQLVLGVLVAISPW--FE-LYLVVRFFLGFFCVSIVFS 228 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l-~~~~~l~~~~~~~~~~~~~--~~-~l~~~r~l~G~~~~~~~~~ 228 (565)
.....+...++..+-.++-+|+.|.++|+.|+||.. -....+..+++++..++++ ++ ..++...+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 445678888889999999999999999999976654 4455556666777777655 44 4556678888888888888
Q ss_pred hhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHH--h-------------------cchhHHHHHHHHHHHHH-HH
Q psy17080 229 GFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYY--S-------------------HNWRLLQWVITIPTIFF-LT 286 (565)
Q Consensus 229 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~--~-------------------~~Wr~~~~~~~~~~~~~-~~ 286 (565)
..+++.+..++++.++.++.-.....+|.++.-.+... . .+-|..+.+.++--++. +.
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 99999999999888888766555555555443222211 0 13566666666554443 34
Q ss_pred HhhhcccchhHHHhcCCH-HHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHH
Q psy17080 287 LWWIMPESPRWLVSMGRN-KEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYI 365 (565)
Q Consensus 287 ~~~~~pesp~~l~~~~~~-~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 365 (565)
.++.+|+.++- +.+. ...+...+ +-..+++++.+++.+.+.++..++
T Consensus 216 m~~~v~~~~~~---~~~~~~~l~~g~k-----------------------------~L~~t~k~i~~~~~i~~FLiA~~~ 263 (438)
T COG2270 216 MILNVHDAEKI---SSPPPTALRNGFK-----------------------------ELKSTFKEIRGRKNLVLFLIARFF 263 (438)
T ss_pred HHhcccccccc---cccchHHHHHHHH-----------------------------HHHHHHHHHhcccchHHHHHHHHH
Confidence 45556655430 0000 00000000 012245566666666655554443
Q ss_pred HH-HHHHHhhhhhhhccCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchH
Q psy17080 366 IW-FSVYLVYYGLVLNLSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSF 441 (565)
Q Consensus 366 ~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~ 441 (565)
.. ..+.....+..+....++.+ ..+......++.++|+++.+++.+|+|.|+++.++.++..+.++... +.....
T Consensus 264 ~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~-~~~~~~ 342 (438)
T COG2270 264 YIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLI-FLEGEL 342 (438)
T ss_pred HHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHH-HccccH
Confidence 32 23333334444444444433 44556667788899999999999999999999999988888877776 556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH--H-HhhhhhHHHHHHHHHHHHH
Q psy17080 442 ITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWHM--Q-SINIHFPMGLLGVVGVLGG 518 (565)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~--~-~~~~~~~~~~~~~~~~i~~ 518 (565)
..+++.++.+++.+...+..-+|..++.|++.-+..+|++++.++.+++++|++... + ..+....+....++.+++.
T Consensus 343 ~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl 422 (438)
T COG2270 343 DFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGL 422 (438)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhH
Confidence 777778888999999999999999999999999999999999999999999998332 2 2234556666666777777
Q ss_pred HHHhhcccCC
Q psy17080 519 LSVLLLPDTT 528 (565)
Q Consensus 519 ~~~~~l~et~ 528 (565)
++.+.+|+.+
T Consensus 423 ~~L~~v~~~~ 432 (438)
T COG2270 423 LLLLRVKVPG 432 (438)
T ss_pred hhEEeecCCC
Confidence 7666666653
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-14 Score=149.15 Aligned_cols=346 Identities=11% Similarity=-0.013 Sum_probs=195.5
Q ss_pred eeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccc-cchhhHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHhhh
Q psy17080 144 ISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKF-GRKKALMGSLVFQLVLGVLVAISP-WFELYLVVRFFLGFF 221 (565)
Q Consensus 144 ~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~-Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G~~ 221 (565)
.+++++ +..+.+.+.+.+.....++.+++|+++||+ |||++++++.++.+++.++.++.. +...+.+...+.++|
T Consensus 37 ~~~lgl---s~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG 113 (493)
T PRK15462 37 TNQLKY---DDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCG 113 (493)
T ss_pred HHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh
Confidence 345788 778889999999999999999999999999 999999999999999988776543 223344444455566
Q ss_pred hhhhHhhhhhhhccccccc--hhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhcccchh
Q psy17080 222 CVSIVFSGFVLCMELVGGK--WLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIMPESPR 296 (565)
Q Consensus 222 ~~~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~pesp~ 296 (565)
.|...+...+++.|.+|++ +|....++...+.++|..++|.+...+ .+|++.|.+.++..++.++.+++..+...
T Consensus 114 ~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~ 193 (493)
T PRK15462 114 YGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFT 193 (493)
T ss_pred cccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 6666677788999999875 688889999988899999999888775 48999999876544443333322111100
Q ss_pred H-HH-hcCCHHHHHHHH---HHHHH-------HcCCCCchhHHH-HHHHHh-h----hhccccCcccchhhccccHH--H
Q psy17080 297 W-LV-SMGRNKEAMKIL---GDAAK-------FNSRKLPLNLEK-LLKESV-L----STNQDVGKKVQVMDLWRTPL--I 356 (565)
Q Consensus 297 ~-l~-~~~~~~~a~~~l---~~~~~-------~~~~~~~~~~~~-~~~~~~-~----~~~~~~~~~~~~~~l~~~~~--~ 356 (565)
. .. .+...++.+... ....- .......++... ...... . --.... .+.+-.| |+|. +
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e--r~r~~~~ 270 (493)
T PRK15462 194 HTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYR-KAENQKQ--RKELGLI 270 (493)
T ss_pred cCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCHHH--HhhHHHH
Confidence 0 00 000000000000 00000 000000000000 000000 0 000000 0000000 1111 1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCc--------CCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCC--hH-----HHHH
Q psy17080 357 RLISFVQYIIWFSVYLVYYGLVLNLSN--------IGGDVYLNTIISGIVEFPAIVISIFILLKMGR--RR-----PLCL 421 (565)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr--r~-----~l~~ 421 (565)
....+...+.|....-.+..+.++..+ +.....+...+..+.-++..++..++-.|..| |. -+.+
T Consensus 271 ~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~ 350 (493)
T PRK15462 271 VTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFAL 350 (493)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHH
Confidence 111222223333222222222221111 11234455566666666666665555455422 21 2567
Q ss_pred HHHHHHHHHHHHhh---cCC-----chHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHH-HHHHHHH
Q psy17080 422 TTLGAGLACLMTLG---FAP-----GSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPA-GVALILI 492 (565)
Q Consensus 422 ~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~-~lg~~i~ 492 (565)
++++.+++++++.. ... +.++.+...++..++--...|+..+.++++.|++.|+..+|+..... .+|..++
T Consensus 351 g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~ 430 (493)
T PRK15462 351 GLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLA 430 (493)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666541 111 22445556667788888888999999999999999999999987643 6777776
Q ss_pred HHH
Q psy17080 493 PYL 495 (565)
Q Consensus 493 p~i 495 (565)
..+
T Consensus 431 g~~ 433 (493)
T PRK15462 431 GVI 433 (493)
T ss_pred HHH
Confidence 665
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.4e-15 Score=142.95 Aligned_cols=267 Identities=13% Similarity=0.002 Sum_probs=176.8
Q ss_pred hcchhHHHHHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh----------------
Q psy17080 204 ISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---------------- 267 (565)
Q Consensus 204 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---------------- 267 (565)
...+|+.++++-++.|.|.+...+....++++..+++++.+.+++.+..+++|.+++|.++..+
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 4578999999999999999999999999999999999999999999999999999999887642
Q ss_pred ---cchhHHHHHHHHHHHHHHHHhhhc--ccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccC
Q psy17080 268 ---HNWRLLQWVITIPTIFFLTLWWIM--PESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVG 342 (565)
Q Consensus 268 ---~~Wr~~~~~~~~~~~~~~~~~~~~--pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (565)
.+|+++|++.+...++..+.+.+. ||..+ ++.+ ...+ +
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~--------~~~~------------------------~~~~-~---- 128 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE--------ADVA------------------------RVSS-G---- 128 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc--------cccc------------------------cccc-c----
Confidence 268999987666654444444443 44311 0000 0000 0
Q ss_pred cccchhhccccHHHHHHHHHHHHHHHHHHHhhhhhhhccC---cCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Q psy17080 343 KKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLS---NIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRR 416 (565)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr 416 (565)
+....++++++|.++...+..++..............+.. ..+.+ ..........+.++|+++++++.||+|+|
T Consensus 129 ~~~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~ 208 (310)
T TIGR01272 129 DTTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG 208 (310)
T ss_pred cccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 0001123556666665544444333222222222222222 12333 23345556667789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH-
Q psy17080 417 RPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL- 495 (565)
Q Consensus 417 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i- 495 (565)
+.+.++..+..++.++.. ..+... .....++.+++.+..+|...+...+.+|++ .+++.++. .++.+|+++.|.+
T Consensus 209 ~~l~~~~~l~~~~~~l~~-~~~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~ 284 (310)
T TIGR01272 209 RYLAFNAFLAVLLSIGAA-LTHGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQ 284 (310)
T ss_pred HHHHHHHHHHHHHHHHHH-HcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHH
Confidence 988887777776665554 333332 233455678999999999999999988865 45666665 5677999999987
Q ss_pred -HHHHHhhhhhHHHHHH
Q psy17080 496 -WHMQSINIHFPMGLLG 511 (565)
Q Consensus 496 -~~~~~~~~~~~~~~~~ 511 (565)
...+..+...++++..
T Consensus 285 G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 285 GSLADCLGIQLAFALPV 301 (310)
T ss_pred HHHHHhccchHHHHHHH
Confidence 3345567666665433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-15 Score=133.30 Aligned_cols=367 Identities=14% Similarity=0.081 Sum_probs=209.5
Q ss_pred eEeCCCCc-ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhccccc-ccchhhHHHHHHHHHHHHHHHH---hcc
Q psy17080 132 WTYDSSSF-GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDK-FGRKKALMGSLVFQLVLGVLVA---ISP 206 (565)
Q Consensus 132 ~~y~~~~~-~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr-~Grr~~l~~~~~l~~~~~~~~~---~~~ 206 (565)
+-||.+.- +.....+.++ +..+..++.+.|.....+-++++|++.|| +|-|..-++-+....++.++.+ .++
T Consensus 58 fcyd~p~alq~~fk~d~ni---~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~ 134 (459)
T KOG4686|consen 58 FCYDAPGALQIDFKLDSNI---EYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISH 134 (459)
T ss_pred eecCCchhhhhhhhccccc---ceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHH
Confidence 45665432 3334445555 55677889999999999999999999997 8888766666666666766655 458
Q ss_pred hhHHHHHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhcchhHHHHHHH---HHHHH
Q psy17080 207 WFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSHNWRLLQWVIT---IPTIF 283 (565)
Q Consensus 207 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~~Wr~~~~~~~---~~~~~ 283 (565)
.+|++.++||+.|+|.-...++-..++.-|+..|+.+.++++.....-+|..+--.+..++.+.-.-++-.. .+++.
T Consensus 135 aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~ 214 (459)
T KOG4686|consen 135 AFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLW 214 (459)
T ss_pred HHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHH
Confidence 999999999999999888888899999999999999999999887777776542222111111000000000 00000
Q ss_pred HHHHhhhcccchhHHHhcCC-HHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHH
Q psy17080 284 FLTLWWIMPESPRWLVSMGR-NKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFV 362 (565)
Q Consensus 284 ~~~~~~~~pesp~~l~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 362 (565)
..+-......|---....+- .+.|++.+++-.... .+ ..+.+-..-+ .|.+|...++
T Consensus 215 l~~~~~tc~~slical~lg~~D~rAerilh~e~g~~-----------------Ge----~pkLtdv~~f-~ppfw~~~ii 272 (459)
T KOG4686|consen 215 LCFEVKTCKQSLICALSLGLSDDRAERILHLEEGFL-----------------GE----EPKLTDVNTF-YPPFWVLVII 272 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCcc-----------------cC----Cccccccccc-CccHHHHHHH
Confidence 00000000000000001111 112222222111000 00 1111111122 2445555544
Q ss_pred HHHHHHHHHHhhh--hhhhccCcCCCcHHHHHHHHH---HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcC
Q psy17080 363 QYIIWFSVYLVYY--GLVLNLSNIGGDVYLNTIISG---IVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFA 437 (565)
Q Consensus 363 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~ 437 (565)
..+.+. ..+.++ +..++.+.++.+......+.+ ....+...+.|.++||.|++...+.+..+..+..=....+.
T Consensus 273 cv~yyv-a~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft 351 (459)
T KOG4686|consen 273 CVLYYV-AWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT 351 (459)
T ss_pred HHHHHH-HHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh
Confidence 443332 222222 334455555554433222222 33455677889999999999887776655543322222121
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHhh-h---hhHHHHHH
Q psy17080 438 PGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWH--MQSIN-I---HFPMGLLG 511 (565)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~--~~~~~-~---~~~~~~~~ 511 (565)
.+.....+.+.|...+..-...+..++-+.|.++.|++.|++..+.++|-.+.|++.. .++.+ + ...|+..+
T Consensus 352 --~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~ 429 (459)
T KOG4686|consen 352 --FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIG 429 (459)
T ss_pred --hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHH
Confidence 1233445556666666666667888889999999999999999999999999999833 23222 2 33455555
Q ss_pred HHHHHHHHHHhhccc
Q psy17080 512 VVGVLGGLSVLLLPD 526 (565)
Q Consensus 512 ~~~~i~~~~~~~l~e 526 (565)
.+++....+.+.+.+
T Consensus 430 ~~aL~svgil~~~N~ 444 (459)
T KOG4686|consen 430 LMALTSVGILFYLNK 444 (459)
T ss_pred HHHHHHHHHHhheec
Confidence 566655555555543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-14 Score=149.09 Aligned_cols=172 Identities=16% Similarity=0.106 Sum_probs=129.8
Q ss_pred cccee-eccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHH---HHhcchhHHHHHHH
Q psy17080 140 GHTII-SEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVL---VAISPWFELYLVVR 215 (565)
Q Consensus 140 ~~~i~-~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~---~~~~~~~~~l~~~r 215 (565)
.|++. +++++ +....++..+...++..++.++.|+++||+|||++++.+.++..++.+. ...+++...++++|
T Consensus 273 ~p~~l~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (490)
T PRK10642 273 MPSYLSHNLHY---SEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGL 349 (490)
T ss_pred HHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 45544 45676 5556677788889999999999999999999999988877654433322 22345677888899
Q ss_pred HHHhhhhhhhHhhhhhhhccccccchhHHHHHH-hhhhhHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHHHhhh
Q psy17080 216 FFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVM-YLFPVPVGYIAISGIAYYS----HNWRLLQWVITIPTIFFLTLWWI 290 (565)
Q Consensus 216 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~lG~~~~~~l~~~~----~~Wr~~~~~~~~~~~~~~~~~~~ 290 (565)
++.|++.+........++.|.+|++.|+...++ ++.+... ..++|.+...+ .+|+..+++..+++++.++..++
T Consensus 350 ~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~-g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 350 LMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLV-AGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 999988777777778888999999999998886 4554444 44555444332 35787777777777777777778
Q ss_pred cccchhHHHhc-----CCHHHHHHHHHHHH
Q psy17080 291 MPESPRWLVSM-----GRNKEAMKILGDAA 315 (565)
Q Consensus 291 ~pesp~~l~~~-----~~~~~a~~~l~~~~ 315 (565)
+||+|+|+..+ +|.+||++.+++++
T Consensus 429 ~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 429 MKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred hccccCCCCCCccccccchhhHHHHhhccc
Confidence 89999998865 99999999999886
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-12 Score=127.69 Aligned_cols=344 Identities=15% Similarity=0.063 Sum_probs=218.7
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhc------chhH--HHHHHHHHHhhhhhh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAIS------PWFE--LYLVVRFFLGFFCVS 224 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~------~~~~--~l~~~r~l~G~~~~~ 224 (565)
+....-|...+|++.+....+++-|+.|++|-|...+++..+.+++..+-..+ +.++ ....+..+.+.+.-.
T Consensus 77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~F 156 (480)
T KOG2563|consen 77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPF 156 (480)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhH
Confidence 33446788999999999999999999999999999999999999999887665 2344 666788888888777
Q ss_pred hHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---------cchhH--HHHHHHHHHHHHHHH-hhhcc
Q psy17080 225 IVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---------HNWRL--LQWVITIPTIFFLTL-WWIMP 292 (565)
Q Consensus 225 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---------~~Wr~--~~~~~~~~~~~~~~~-~~~~p 292 (565)
.......+..-|+++++|..+..+-.++..+|.+++.++...+ ..|-. +|+.....+.+.+++ .+..+
T Consensus 157 im~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~ 236 (480)
T KOG2563|consen 157 ILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFT 236 (480)
T ss_pred hhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6666677788999999999999988888888888877665543 13443 344333333333332 23333
Q ss_pred cchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHH
Q psy17080 293 ESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYL 372 (565)
Q Consensus 293 esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 372 (565)
+.|+. |..... ...++..-..+.+..++++++....++..+.....+.
T Consensus 237 ~~P~t-------------------------Pps~s~-------~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~ 284 (480)
T KOG2563|consen 237 KKPPT-------------------------PPSASQ-------AALQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNS 284 (480)
T ss_pred CCCCC-------------------------CCchhH-------hhhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHH
Confidence 33320 000000 0000112344677889998877666665554444444
Q ss_pred hhhhhhh--ccCcCC-CcHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHHHHHHHhhc--C-CchHHHHH
Q psy17080 373 VYYGLVL--NLSNIG-GDVYLNTIISGIVEFPAIVISIFILLKMGRR-RPLCLTTLGAGLACLMTLGF--A-PGSFITIS 445 (565)
Q Consensus 373 ~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr-~~l~~~~~~~~~~~~~~~~~--~-~~~~~~~~ 445 (565)
.++.+.. ..+.+. ...+....+..+.++++.++.|.+.||.+.- ..+.+......++.+.+... . ...+.+..
T Consensus 285 l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~ 364 (480)
T KOG2563|consen 285 LSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFT 364 (480)
T ss_pred HHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhh
Confidence 4443331 122222 2345556666777889999999999998874 44444444444332222111 1 12244555
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHhh----hhhHHHHHHHHHHHHHH
Q psy17080 446 LAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWH--MQSIN----IHFPMGLLGVVGVLGGL 519 (565)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~--~~~~~----~~~~~~~~~~~~~i~~~ 519 (565)
...+.+++....+|+..-+..|..-+..-++..|+.++.+++-+++-.++.. ....+ +...-+.....+++.+.
T Consensus 365 t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~ 444 (480)
T KOG2563|consen 365 TCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAI 444 (480)
T ss_pred hHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHH
Confidence 5556666666677888888888766666688899999999888887777722 23333 33344555566666666
Q ss_pred HHhhcccCC
Q psy17080 520 SVLLLPDTT 528 (565)
Q Consensus 520 ~~~~l~et~ 528 (565)
+..++++..
T Consensus 445 lva~~r~~y 453 (480)
T KOG2563|consen 445 LVAFFRPDY 453 (480)
T ss_pred HHhhhhhhH
Confidence 665555543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.50 E-value=7e-11 Score=114.86 Aligned_cols=314 Identities=15% Similarity=0.111 Sum_probs=198.7
Q ss_pred cceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhccccccc-----chhhHHH-HHHHHHHHHHHHHhc-----c---
Q psy17080 141 HTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFG-----RKKALMG-SLVFQLVLGVLVAIS-----P--- 206 (565)
Q Consensus 141 ~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~G-----rr~~l~~-~~~l~~~~~~~~~~~-----~--- 206 (565)
.-++.|+++ ..+..+...++..+-.. ..+.+|+.||+.+ ||..+++ +.++...+..+.+++ .
T Consensus 4 RVMIvEL~v---pA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~ 79 (403)
T PF03209_consen 4 RVMIVELGV---PAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQ 79 (403)
T ss_pred hhHHHHhcc---HHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 346778898 88888888888877655 6889999999998 7765544 566666555554442 2
Q ss_pred ----hh--H--HHHHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHH-hcch---hHHH
Q psy17080 207 ----WF--E--LYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYY-SHNW---RLLQ 274 (565)
Q Consensus 207 ----~~--~--~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~-~~~W---r~~~ 274 (565)
+. + ...+...+.|+|.+.......+++.|..++++|+++.++......+|.++++.+... +.++ |...
T Consensus 80 ~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~ 159 (403)
T PF03209_consen 80 QSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQ 159 (403)
T ss_pred ccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHH
Confidence 22 2 344567888999999999999999999999999999999999999999998877654 3332 3333
Q ss_pred HHHHHH--HHHHHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccc
Q psy17080 275 WVITIP--TIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWR 352 (565)
Q Consensus 275 ~~~~~~--~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 352 (565)
.+.... .+...++..+=.|.++- +. ...+++++..-...++++..
T Consensus 160 v~~~~a~i~~~l~~ia~wg~E~r~~-------~~--------------------------~~~~~~~~~~f~~a~~~~~~ 206 (403)
T PF03209_consen 160 VIQGVALIALLLNLIALWGQEPRRS-------RR--------------------------AAAAERPRPPFREAWRQVWA 206 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCc-------cc--------------------------ccCCCCCCccHHHHHHHHHh
Confidence 332222 22222222222232110 00 00001111112234566677
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhhhhhccCcCC-----CcH---HHHHHHHHHHHHHHHHHHHHHHh-hcCChHHHHHHH
Q psy17080 353 TPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIG-----GDV---YLNTIISGIVEFPAIVISIFILL-KMGRRRPLCLTT 423 (565)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~l~d-r~grr~~l~~~~ 423 (565)
+|+.++.+...++..+ .|+.....++.++ .++ .....+.+.+.++|..+.+++.. |.++++...++.
T Consensus 207 ~~~a~~f~~fl~l~t~----a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~ 282 (403)
T PF03209_consen 207 SPQARRFFVFLFLGTL----AFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGC 282 (403)
T ss_pred CCChhHHHHHHHHHHH----HHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 7877776665553332 2333333344433 232 23344556677888888787665 677777777777
Q ss_pred HHHHHHHHHHh--hcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHH----HHHHHHHHH
Q psy17080 424 LGAGLACLMTL--GFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAG----VALILIPYL 495 (565)
Q Consensus 424 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~----lg~~i~p~i 495 (565)
.+..+++.++. ....+.+.+....++.|++.+.......+...++.+++..|..+|.-..... +|.+++..+
T Consensus 283 ~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~ 360 (403)
T PF03209_consen 283 LLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGAL 360 (403)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666655443 2344557777778888888888877777888888888888999988765554 444444444
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.8e-11 Score=118.22 Aligned_cols=368 Identities=12% Similarity=-0.002 Sum_probs=214.6
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhccccc-ccchhhHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHhhhhhhhHhhh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDK-FGRKKALMGSLVFQLVLGVLVAISP--WFELYLVVRFFLGFFCVSIVFSG 229 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr-~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~ 229 (565)
++....-+.++|..-.-+..+++|+++|| .|+|+.+..+.++..++.++.+.+. +...++++-.+.++|.|..-+..
T Consensus 59 ~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~Ni 138 (498)
T COG3104 59 DETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNI 138 (498)
T ss_pred ChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccH
Confidence 55555555666666666788899999999 6999999999999999999999984 78899999999999999999999
Q ss_pred hhhhccccccc--hhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhcccc---------h
Q psy17080 230 FVLCMELVGGK--WLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIMPES---------P 295 (565)
Q Consensus 230 ~~~i~e~~~~~--~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~pes---------p 295 (565)
.+++.|.+|++ +|....+++.++.++|.+++|.+..++ .+|...|.+.++-..+.++.++..+.. |
T Consensus 139 S~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~ 218 (498)
T COG3104 139 SSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDP 218 (498)
T ss_pred HHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCc
Confidence 99999999854 466778889999999999999888775 478888888777666655554443211 1
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHc--CCCCchhHHHHHHHH---hhh---hccccCcccchhhccccHHHHHHHHHHHHHH
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFN--SRKLPLNLEKLLKES---VLS---TNQDVGKKVQVMDLWRTPLIRLISFVQYIIW 367 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~--~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 367 (565)
.-+..+................. ............... ... .+....++.. .+.-|-.....+++...+.|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~~~iFW 297 (498)
T COG3104 219 NPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLFAVIFW 297 (498)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHHHHHHHHHHHHHHHHHH
Confidence 11111111100111111100000 000000000000000 000 0000000000 01001111122223333334
Q ss_pred HHH-----HHhhhhhhhccCc-C--CCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-------HHHHHHHHHHHHHHHH
Q psy17080 368 FSV-----YLVYYGLVLNLSN-I--GGDVYLNTIISGIVEFPAIVISIFILLKMGRR-------RPLCLTTLGAGLACLM 432 (565)
Q Consensus 368 ~~~-----~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr-------~~l~~~~~~~~~~~~~ 432 (565)
... .+..|.......+ + ..+..+...+..+.-++..++..++..|.+++ .-+.+++.+++.+.++
T Consensus 298 ~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~ 377 (498)
T COG3104 298 ALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLI 377 (498)
T ss_pred HHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHH
Confidence 322 2222222221112 2 23445556666666677777777766664332 2244555555555555
Q ss_pred Hhhc---C---C---chHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHH-------
Q psy17080 433 TLGF---A---P---GSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLW------- 496 (565)
Q Consensus 433 ~~~~---~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~------- 496 (565)
+... . . +.++.+...++..++--...|+...++..+.|+...+..+++.......|..++..+.
T Consensus 378 l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~ 457 (498)
T COG3104 378 LLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTD 457 (498)
T ss_pred HHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccc
Confidence 4422 1 1 1255566667778888888899999999999999999999988776666666655441
Q ss_pred -HHHHhhhhhHHHHHHHHHHHHHHHH
Q psy17080 497 -HMQSINIHFPMGLLGVVGVLGGLSV 521 (565)
Q Consensus 497 -~~~~~~~~~~~~~~~~~~~i~~~~~ 521 (565)
..+.......|+.++...++..+..
T Consensus 458 ~~~~~~~~~~~F~~~g~v~i~~~~~~ 483 (498)
T COG3104 458 PAYTAFIEGRVFGTIGVVAIVIGILL 483 (498)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 2233445556777777666555543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.6e-13 Score=114.73 Aligned_cols=133 Identities=20% Similarity=0.298 Sum_probs=115.8
Q ss_pred HHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhhccccccc
Q psy17080 161 EMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGK 240 (565)
Q Consensus 161 ~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~ 240 (565)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|..|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 45567888999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHH-hhhccc
Q psy17080 241 WLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTL-WWIMPE 293 (565)
Q Consensus 241 ~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~-~~~~pe 293 (565)
+|++..++......+|..+++.+...+ .+|++.+++.++..++..+. .++.||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999988887765 47999988877776665544 344454
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.8e-11 Score=121.28 Aligned_cols=303 Identities=16% Similarity=0.148 Sum_probs=186.4
Q ss_pred HHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhh--hhhhHhhhhhhhccccccc
Q psy17080 163 VFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFF--CVSIVFSGFVLCMELVGGK 240 (565)
Q Consensus 163 ~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~i~e~~~~~ 240 (565)
.-.+...+.++..|.++||+|||..+...+....+..+...+.. +++++ +.|+. .+.......++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchh
Confidence 44566778899999999999999999999999888888777766 33333 44443 2455667789999999999
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHH-hhhcccchhHHHhcCCHHHHHHHHHHHHH
Q psy17080 241 WLTIMGVMYLFPVPVGYIAISGIAYYSH---NWRLLQWVITIPTIFFLTL-WWIMPESPRWLVSMGRNKEAMKILGDAAK 316 (565)
Q Consensus 241 ~r~~~~~~~~~~~~lG~~~~~~l~~~~~---~Wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~l~~~~~ 316 (565)
+|....++....+..+..++|.++.... +.-..+.+..+..++..+. .+++||+-.- +.+.+ + ...+
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~---~~~~~-~-----~~~~ 215 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQE---KERSD-A-----TLRE 215 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCc---ccccc-c-----cccc
Confidence 9999999999988888888888887753 4445666666665555544 6678887320 00000 0 0000
Q ss_pred Hc-CCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhh-hhhhc-cCcCCCcHH---H
Q psy17080 317 FN-SRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYY-GLVLN-LSNIGGDVY---L 390 (565)
Q Consensus 317 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~---~ 390 (565)
.. +.....+.. +........-.+|......+...+........+. ...++ -..++.+.. .
T Consensus 216 ~~~~~~~~~~~~--------------~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~ 281 (463)
T KOG2816|consen 216 LTPGSLDSSHVA--------------DAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSD 281 (463)
T ss_pred cCCCcccchhhh--------------hhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHH
Confidence 00 000000000 0000001111122222222222211111111111 11111 223344432 2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy17080 391 NTIISGIVEFPAIVISI-FILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELF 469 (565)
Q Consensus 391 ~~~~~~~~~~~~~~~~~-~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 469 (565)
.....+....++.++.. .+...+|-|+....++..-.+..+... +....|..+....+.. ......+...+..+...
T Consensus 282 ~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~a-f~~~~w~~~~~~v~~~-~~~~~~pa~~s~~s~~v 359 (463)
T KOG2816|consen 282 LLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFA-FATETWMMFAAGVVVA-LAGIVFPAIRAFASILV 359 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHH-HhccchhhhHHHHHHH-hhcchhHHHHhHHHhhc
Confidence 33444555666666555 677788888888888888888888887 6677666555544443 33445688888899999
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 470 PTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 470 p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
.++.+|++.++...+..+.++++|.+
T Consensus 360 ~~~e~g~v~~~is~i~~l~~~~~~~~ 385 (463)
T KOG2816|consen 360 SPEEQGKVFGIISGIEGLSGVVSPAL 385 (463)
T ss_pred ccccccchhhHHHHHHHHhhhhhHHH
Confidence 99999999999999999999999988
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.3e-12 Score=125.38 Aligned_cols=143 Identities=19% Similarity=0.149 Sum_probs=112.4
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccc-hhhHHHHHHHHHHHHHHH-Hhc---c-hhHHHHHHHHHHhhhhhhhH
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGR-KKALMGSLVFQLVLGVLV-AIS---P-WFELYLVVRFFLGFFCVSIV 226 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Gr-r~~l~~~~~l~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~~~~~ 226 (565)
+....|++.++..+|.+++++.+|+.+.|.|. |+.++.+.++..+++++. ++. + ..+.++++|++.|+|. +..
T Consensus 69 ~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~-~n~ 147 (488)
T KOG2325|consen 69 TATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV-GNF 147 (488)
T ss_pred CcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc-ccH
Confidence 44567999999999999999999999999997 888899999999999887 432 3 6778999999999995 456
Q ss_pred hhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhc-----c-----------hhHHHHHHHHHHHHHHHH-hh
Q psy17080 227 FSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSH-----N-----------WRLLQWVITIPTIFFLTL-WW 289 (565)
Q Consensus 227 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~-----~-----------Wr~~~~~~~~~~~~~~~~-~~ 289 (565)
....+|+++....++|.++.+....+..+|.++||.+...+. | +..+-|+.++..++.++. .+
T Consensus 148 a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~ 227 (488)
T KOG2325|consen 148 AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILF 227 (488)
T ss_pred HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHh
Confidence 677899999888999999999998888888888887765542 2 233455666665555444 45
Q ss_pred hcccchh
Q psy17080 290 IMPESPR 296 (565)
Q Consensus 290 ~~pesp~ 296 (565)
++.|.++
T Consensus 228 ~f~E~~~ 234 (488)
T KOG2325|consen 228 FFKEVYR 234 (488)
T ss_pred heeeccc
Confidence 5677654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.9e-12 Score=135.94 Aligned_cols=140 Identities=15% Similarity=0.031 Sum_probs=121.1
Q ss_pred hhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhhcc
Q psy17080 156 LESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCME 235 (565)
Q Consensus 156 ~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e 235 (565)
...+...+..++.++|.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.++.++...++++|
T Consensus 596 ~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aE 675 (742)
T TIGR01299 596 MIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVE 675 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777789999999999999999999999999999999999999999988888899999999988999999999999
Q ss_pred ccccchhHHHHHHhhhhhHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHhhhcccch
Q psy17080 236 LVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSH--NWRLLQWVITIPTIFFLTLWWIMPESP 295 (565)
Q Consensus 236 ~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~--~Wr~~~~~~~~~~~~~~~~~~~~pesp 295 (565)
++|.+.|++++++......+|.+++|.++..+. +...+|++.++..++..++.+++||+.
T Consensus 676 l~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 676 LYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999998876442 334567777777666666677789873
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-09 Score=112.24 Aligned_cols=363 Identities=14% Similarity=0.107 Sum_probs=204.6
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccc---c--chhhHHHHHHHHHHHHHHHHhc----chhHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKF---G--RKKALMGSLVFQLVLGVLVAIS----PWFEL 210 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~---G--rr~~l~~~~~l~~~~~~~~~~~----~~~~~ 210 (565)
.+-+.+++++ +..+.....+...+...+ -++.|.++|-+ | ||+-++++.++..++.+..+.. .+...
T Consensus 13 ~~~l~~~l~l---s~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~ 88 (433)
T PF03092_consen 13 YPFLKDDLGL---SPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI 88 (433)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence 3456677888 777777777777776654 45789999975 3 5556666777766655555543 35667
Q ss_pred HHHHHHHHhhhhhhhHhhhhhhhccccc--cchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHH
Q psy17080 211 YLVVRFFLGFFCVSIVFSGFVLCMELVG--GKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFL 285 (565)
Q Consensus 211 l~~~r~l~G~~~~~~~~~~~~~i~e~~~--~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~ 285 (565)
..+.-++..+|.+.....+-+++.|... ++.|+...+.......+|.+++..+++.. .++|..|.+.++..++..
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~ 168 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML 168 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence 7777888999999999999999999984 44477878888888888888887776554 367888888766655554
Q ss_pred HHh-hhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHH-HH
Q psy17080 286 TLW-WIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISF-VQ 363 (565)
Q Consensus 286 ~~~-~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~ 363 (565)
+.. +..+|.+. .+.++... ..+++.+... . ..++.....++.++.+.++...+ ..
T Consensus 169 ~~~~~~~~e~~~-----~~~~~~~~-------~~~~~~~~~~----~-------~~~~~~~~l~~~~~~~~i~~~~~~~~ 225 (433)
T PF03092_consen 169 IVALFLLEERKV-----RPADEVFS-------FGKEEVPCLF----G-------SFREQLSELWRALQQRAIWQPILFFI 225 (433)
T ss_pred HHHHHhhhhccc-----cccchhhc-------ccccccchhh----H-------HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 443 34444210 00000000 0000000000 0 00011223455666777666555 22
Q ss_pred HHHHHHHHH----hhhhhhhccCcCCCcHHH---HHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhc
Q psy17080 364 YIIWFSVYL----VYYGLVLNLSNIGGDVYL---NTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF 436 (565)
Q Consensus 364 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~ 436 (565)
++....... .+|.........+.+... ...+.+++.+.|..+......+..-|+++.+..++..+..+.-..+
T Consensus 226 ~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~l 305 (433)
T PF03092_consen 226 FFFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLL 305 (433)
T ss_pred HHHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEE
Confidence 221111110 111111111111123222 2233344445555555555555666777776666655544432211
Q ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH-HHH-HHh----
Q psy17080 437 ---------APGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL-WHM-QSI---- 501 (565)
Q Consensus 437 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i-~~~-~~~---- 501 (565)
.++.+....-.++..+.....+-.....++|+.|+..-|+.+++...+.++|..++..+ ..+ ...
T Consensus 306 v~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~ 385 (433)
T PF03092_consen 306 VTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTR 385 (433)
T ss_pred EEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 11222222233444555555566667889999999999999999988888888777666 111 111
Q ss_pred ----hhhhHHHHHHHHHHHHHHHHhhcccCCC
Q psy17080 502 ----NIHFPMGLLGVVGVLGGLSVLLLPDTTG 529 (565)
Q Consensus 502 ----~~~~~~~~~~~~~~i~~~~~~~l~et~~ 529 (565)
+.....++..++.++...+..++|+.++
T Consensus 386 ~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~ 417 (433)
T PF03092_consen 386 DDFSNLWLLILICSVIQLLPLPLLFLLPPQKR 417 (433)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 1233344555555556666678888665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-13 Score=140.76 Aligned_cols=346 Identities=14% Similarity=0.104 Sum_probs=3.0
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcc-------------
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISP------------- 206 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~------------- 206 (565)
.++|.+.|++ ++.+.|++.+.+-++..+..++..++.+|..|-|.+-.+.++.+++++++++-+
T Consensus 26 lttiErRF~l---~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~ 102 (539)
T PF03137_consen 26 LTTIERRFGL---SSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASN 102 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccc
Confidence 7899999999 999999999999999999999999999998888888899999999988876410
Q ss_pred -------------------------------------hhHHHHHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHh
Q psy17080 207 -------------------------------------WFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMY 249 (565)
Q Consensus 207 -------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~ 249 (565)
-+..++++.++.|+|....++...+|+-|.+++++-+...++.
T Consensus 103 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~ 182 (539)
T PF03137_consen 103 SNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGIL 182 (539)
T ss_dssp -------------------------------------------------SSS----------------------------
T ss_pred cccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhh
Confidence 0246788999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhc-------------------------chhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCH
Q psy17080 250 LFPVPVGYIAISGIAYYSH-------------------------NWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRN 304 (565)
Q Consensus 250 ~~~~~lG~~~~~~l~~~~~-------------------------~Wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~ 304 (565)
.....+|+++|-+++.... .|..-|++.++..++..+..+++|+..+-. +++.
T Consensus 183 ~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~--~~~~ 260 (539)
T PF03137_consen 183 YAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT--SERQ 260 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc--cccc
Confidence 9999998888877765420 244455566666666666666666542211 0001
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHH-HHHhhhhhhhccCc
Q psy17080 305 KEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFS-VYLVYYGLVLNLSN 383 (565)
Q Consensus 305 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 383 (565)
++.+...++..+.+.++..+ .+.........+.-....+++++||.+....+...+..+. ..+..|..-+...+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~Q 335 (539)
T PF03137_consen 261 EEKESSERKEEDSDKDSFKD-----PKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQ 335 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhhhhcchhhhhhhcccc-----cccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11100000000000000000 0000000011122345678889998877666655554443 33344444444455
Q ss_pred CCCcHHHHHHHHHHH----HHHHHHHHHHHHhhcCC--hHHHHHHHHHHHHHHHH---Hhhc-----------CCc----
Q psy17080 384 IGGDVYLNTIISGIV----EFPAIVISIFILLKMGR--RRPLCLTTLGAGLACLM---TLGF-----------APG---- 439 (565)
Q Consensus 384 ~~~~~~~~~~~~~~~----~~~~~~~~~~l~dr~gr--r~~l~~~~~~~~~~~~~---~~~~-----------~~~---- 439 (565)
++.+......+.++. ..+|.+++|++++|++- |..+.+..+...+..+. ...+ .+.
T Consensus 336 F~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~ 415 (539)
T PF03137_consen 336 FGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNST 415 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCcccccc
Confidence 565555555555544 44678899999998753 44443333333332222 1100 000
Q ss_pred ------------------------h-----------HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHH
Q psy17080 440 ------------------------S-----------FITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVP 484 (565)
Q Consensus 440 ------------------------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~ 484 (565)
. ..+.+..++..+..+.........+-..+|++.|+.+.|+..++
T Consensus 416 ~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~ 495 (539)
T PF03137_consen 416 SSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLI 495 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHH
Confidence 0 11222223333333444445556667889999999999999776
Q ss_pred HH-HHHHHHHHH
Q psy17080 485 AG-VALILIPYL 495 (565)
Q Consensus 485 ~~-lg~~i~p~i 495 (565)
.+ +|.+-+|++
T Consensus 496 ~rllg~IPgPIi 507 (539)
T PF03137_consen 496 IRLLGFIPGPII 507 (539)
T ss_dssp ------------
T ss_pred HHhhcCcchHHH
Confidence 55 566778887
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-10 Score=114.60 Aligned_cols=146 Identities=14% Similarity=0.128 Sum_probs=117.5
Q ss_pred eeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhh
Q psy17080 144 ISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCV 223 (565)
Q Consensus 144 ~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 223 (565)
.+++++ +..+.+++.+...++..++.++.|+++||+|||+.+..+.+...+......+.++.+.+++.+++.+++.+
T Consensus 244 ~~~~~~---~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g 320 (393)
T PRK15011 244 INELHL---PEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIG 320 (393)
T ss_pred HHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 356777 66778888888778888899999999999999998887776666555555567788888889999998888
Q ss_pred hhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhccc
Q psy17080 224 SIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIMPE 293 (565)
Q Consensus 224 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~pe 293 (565)
...+....+..|..|+ +|+++.++.+....+|..+++.++..+ .+|+..+++.+++.++.++..+++||
T Consensus 321 ~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 321 ILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 7777777888898875 589999998888888888888877664 37999998888887777777777665
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.1e-10 Score=115.46 Aligned_cols=140 Identities=14% Similarity=0.036 Sum_probs=116.0
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHHHhhhhhhhHhhhh
Q psy17080 155 SLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISP----WFELYLVVRFFLGFFCVSIVFSGF 230 (565)
Q Consensus 155 ~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~ 230 (565)
...+...++..++..++.++.|+++||+|||+++..+.++.+++..+..... +++.+++.+++.|++.+...+...
T Consensus 251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~ 330 (418)
T TIGR00889 251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS 330 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999999999999999999999988877666632 245677889999999998888989
Q ss_pred hhhccccccchhHHHHHHhh-hhhHHHHHHHHHHHHHh---------cchhHHHHHHHHHHHHHHHH-hhhcccc
Q psy17080 231 VLCMELVGGKWLTIMGVMYL-FPVPVGYIAISGIAYYS---------HNWRLLQWVITIPTIFFLTL-WWIMPES 294 (565)
Q Consensus 231 ~~i~e~~~~~~r~~~~~~~~-~~~~lG~~~~~~l~~~~---------~~Wr~~~~~~~~~~~~~~~~-~~~~pes 294 (565)
.++.|++|+++|+++.++.+ ....+|.+++|.+++.+ .+|+..|++.++..++..++ .++++|+
T Consensus 331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999997 66788888888877653 25999998877775555444 5667776
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-09 Score=110.34 Aligned_cols=140 Identities=18% Similarity=0.154 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAEL 468 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 468 (565)
........+...++.++.|++.||+|||+.+..+.++.+++.++.. +.++.+...+..++.+++.+...+....++.|.
T Consensus 32 ~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 110 (399)
T TIGR00893 32 GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA-FAGAYVSLYILRVLLGAAEAPFFPGIILIVASW 110 (399)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 4555666778888999999999999999999999888888877776 556667777777888888888889999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHH-hhcccCCC
Q psy17080 469 FPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSV-LLLPDTTG 529 (565)
Q Consensus 469 ~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~-~~l~et~~ 529 (565)
+|++.|+++.++.+....+|..++|.+ ...+..++...+.+.+++.++..+.. +..||++.
T Consensus 111 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 111 FPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred CCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 999999999999999999999999988 33566678888888877777665544 44555543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-09 Score=112.16 Aligned_cols=150 Identities=14% Similarity=0.086 Sum_probs=112.9
Q ss_pred hhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q psy17080 378 VLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAI 454 (565)
Q Consensus 378 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (565)
+...++++.+. ........++..++.++.|++.||+|||+.+.++.++.+++.++.. +.++.+...+..++.+++.
T Consensus 47 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~g~~~ 125 (434)
T PRK11663 47 PEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFG-FSSSLWAFALLWVLNAFFQ 125 (434)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHH
Confidence 33444555443 3444455667788999999999999999999999999888887776 5555555555556667777
Q ss_pred HHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHH-HHhhcccCC
Q psy17080 455 SSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGL-SVLLLPDTT 528 (565)
Q Consensus 455 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~-~~~~l~et~ 528 (565)
+..++....+..|.+|++.|++++|+.+....+|.+++|.+ ...+..++...|.+.+++.++..+ ..+++||+.
T Consensus 126 g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p 202 (434)
T PRK11663 126 GWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKP 202 (434)
T ss_pred HccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 77778888999999999999999999999999999999887 344566888888887776655443 345566643
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-08 Score=99.45 Aligned_cols=299 Identities=12% Similarity=0.082 Sum_probs=184.9
Q ss_pred HHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhhccccccc
Q psy17080 161 EMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGK 240 (565)
Q Consensus 161 ~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~ 240 (565)
+++.+..+.+++++.+.+.|+.|.|+.+.++........+..-+ +|-+-+++.-.+.|+|.+..+..--.++.|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 66777778889999999999999999999999988887776655 55667888999999999999999999999999999
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHHHhc-----------chh-HH----------HHHHHHH---HHHHHHHhhhcccch
Q psy17080 241 WLTIMGVMYLFPVPVGYIAISGIAYYSH-----------NWR-LL----------QWVITIP---TIFFLTLWWIMPESP 295 (565)
Q Consensus 241 ~r~~~~~~~~~~~~lG~~~~~~l~~~~~-----------~Wr-~~----------~~~~~~~---~~~~~~~~~~~pesp 295 (565)
.+.+..++.......+.++|+.+..... +-+ .. ..+.+++ ..+..+...+.|..
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~- 213 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSK- 213 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCcc-
Confidence 9999988888888888888776655431 111 11 1111111 11111112222221
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHH--Hh
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVY--LV 373 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~ 373 (565)
+.. .+.+. .+....+.-....++++++++..+....+..++... ..
T Consensus 214 ~~~------~~~~~--------------------------~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~ 261 (461)
T KOG3098|consen 214 DVV------NCKSS--------------------------SETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWIS 261 (461)
T ss_pred chh------hhhhh--------------------------ccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHh
Confidence 000 00000 000000011123456667766655554444433222 12
Q ss_pred hhhhhhccC-cCCCc-H---HHHHHHHHHHHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHHHHHhhcCCch-----
Q psy17080 374 YYGLVLNLS-NIGGD-V---YLNTIISGIVEFPAIVISIFILLK---MGRRRPLCLTTLGAGLACLMTLGFAPGS----- 440 (565)
Q Consensus 374 ~~~~~~~~~-~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~dr---~grr~~l~~~~~~~~~~~~~~~~~~~~~----- 440 (565)
.|...+... ..+.+ . .......+++++.+....+.+.+| +||++.+.++..+..+.+++...-.|.+
T Consensus 262 iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~ 341 (461)
T KOG3098|consen 262 IYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRP 341 (461)
T ss_pred ccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCC
Confidence 222222222 22222 1 234455667777777777777665 6788888888777777766655333211
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHH
Q psy17080 441 ------------FITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPY 494 (565)
Q Consensus 441 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~ 494 (565)
....+..++.|++-.......+.++..++| +.|..+.++.-+-..++..++-+
T Consensus 342 t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f 406 (461)
T KOG3098|consen 342 TDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFF 406 (461)
T ss_pred CcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhh
Confidence 345566677788888888888999999994 56788888876666666555433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.1e-09 Score=101.86 Aligned_cols=325 Identities=11% Similarity=0.023 Sum_probs=190.5
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhhccccc
Q psy17080 159 LAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVG 238 (565)
Q Consensus 159 l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~ 238 (565)
-+.-...-.++...++...+.|..|.|++++++.+...+..++..+.++...+-+..++-|++.+. ..+.++++--..+
T Consensus 45 ~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~ 123 (412)
T PF01770_consen 45 EIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVD 123 (412)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecC
Confidence 345556666777888999999999999999999999999999999999999999999999999655 6777899999999
Q ss_pred cchhHHHHHHhhhhhHHHHHHHHHHHHHh-----cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHHHHHHHHH
Q psy17080 239 GKWLTIMGVMYLFPVPVGYIAISGIAYYS-----HNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGD 313 (565)
Q Consensus 239 ~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-----~~Wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~ 313 (565)
+++-.++.+...++.-+|..+++.++..+ .+.+.++++......+.++..+++|..++-+.-+++..+... .++
T Consensus 124 ~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~-~~~ 202 (412)
T PF01770_consen 124 KEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQD-ANE 202 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccc-ccc
Confidence 99989998888888888888888777664 256666666665556666667788876653333332211111 000
Q ss_pred HHHHcCCCCchhHHHHHHHHhhhhcccc-------CcccchhhccccHHHHHHHHHHHHHHHH-HHHhhhhhhhccCc--
Q psy17080 314 AAKFNSRKLPLNLEKLLKESVLSTNQDV-------GKKVQVMDLWRTPLIRLISFVQYIIWFS-VYLVYYGLVLNLSN-- 383 (565)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-- 383 (565)
....+..+.+++. .+.....+..+. .-...+++..++|.+++..+--.+...+ ....+|...++...
T Consensus 203 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~ 279 (412)
T PF01770_consen 203 SESDKMNESPESS---SSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPP 279 (412)
T ss_pred ccccccccccccc---cccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCC
Confidence 0000000000000 000000000000 0112345556677665554433332222 22233443333222
Q ss_pred CCCcHH---HHHHHHHHHHHHHHHHHHHHHhhcCChHHHH--HHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHH
Q psy17080 384 IGGDVY---LNTIISGIVEFPAIVISIFILLKMGRRRPLC--LTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSN 458 (565)
Q Consensus 384 ~~~~~~---~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (565)
...... ..-....+.+.++.+..|++-.++.+-.-+. ...++.+.+.+++. ...+.|...+..++.+.......
T Consensus 280 ~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~-~t~~Iwv~Y~~yIif~~~y~fli 358 (412)
T PF01770_consen 280 SDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMS-FTGNIWVCYAGYIIFRSLYMFLI 358 (412)
T ss_pred CCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHH
Confidence 111111 2222334445556667777755555533332 23333344444444 55566777777777666666666
Q ss_pred HHHHHhcccccchhhhhhHHHHHHHHHHHHH
Q psy17080 459 VIIPIYTAELFPTKMRNLGVGASSVPAGVAL 489 (565)
Q Consensus 459 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~ 489 (565)
++...-++.....+.-+..+|+.++++.+-.
T Consensus 359 TiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQ 389 (412)
T PF01770_consen 359 TIASFQIAKNLSEERYALVFGINTFVALVLQ 389 (412)
T ss_pred HHHHHHHHHhccccceeeeeeeHHHHHHHHH
Confidence 7666666666666666777777766554433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-09 Score=110.31 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAEL 468 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 468 (565)
.....+..+...++.++.|++.||+|||+.+..+.++.+++.++.. +.++.+...+..++.+++.+...+....++.|.
T Consensus 50 g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~ 128 (405)
T TIGR00891 50 ASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACG-FAPGYITMFIARLVIGIGMGGEYGSSAAYVIES 128 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence 4455566677888999999999999999999999888888877776 556666666777788888888888889999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHhh--hhhHHHHHHHHHHHHHHHHhhcccCCC
Q psy17080 469 FPTKMRNLGVGASSVPAGVALILIPYLW--HMQSIN--IHFPMGLLGVVGVLGGLSVLLLPDTTG 529 (565)
Q Consensus 469 ~p~~~r~~~~g~~~~~~~lg~~i~p~i~--~~~~~~--~~~~~~~~~~~~~i~~~~~~~l~et~~ 529 (565)
+|++.|+.+.|+.++...+|.+++|.+. .....+ +...+.+.++..++..+....+||++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 193 (405)
T TIGR00891 129 WPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAED 193 (405)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 9999999999999999999999999872 223333 666676655555555445566777643
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-10 Score=116.61 Aligned_cols=142 Identities=11% Similarity=0.086 Sum_probs=116.8
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVL 232 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 232 (565)
+..+.|++.++..++..++.++.|+++||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+....+
T Consensus 260 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 339 (420)
T PRK09528 260 GTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKY 339 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999998999999999999999999999988888888899
Q ss_pred hccccccchhHHHHHH-hhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHH-hhhcccc
Q psy17080 233 CMELVGGKWLTIMGVM-YLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTL-WWIMPES 294 (565)
Q Consensus 233 i~e~~~~~~r~~~~~~-~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~-~~~~pes 294 (565)
+.|.+|++.|+...+. ++.+..+|.++++.+.+.+ .||+..|++.++..++..+. ++++++.
T Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 340 ITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999988876544 5566778888887776654 38999999877776554444 4444443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-09 Score=107.22 Aligned_cols=157 Identities=12% Similarity=0.061 Sum_probs=113.8
Q ss_pred HHHHHHhhhhhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCC-----
Q psy17080 367 WFSVYLVYYGLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAP----- 438 (565)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~----- 438 (565)
.+.........+.+..+.+.+. ........+..+++.++.|++.||+|||+.+..+.++.+++.++.. +..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~ 90 (365)
T TIGR00900 12 LIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP-FVALLGGL 90 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH-HHHHcCCC
Confidence 3333333344444444444433 3444555667778899999999999999999988887777666555 222
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHH
Q psy17080 439 GSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVL 516 (565)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i 516 (565)
+.+...+..++.+++.+...+...++..|.+|++.|+++.|+.+....+|.+++|.+ ...+..++...+++.++..++
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~ 170 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAI 170 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 446666677777888888888899999999999999999999999999999999988 334566778778777776666
Q ss_pred HHHHHhhc
Q psy17080 517 GGLSVLLL 524 (565)
Q Consensus 517 ~~~~~~~l 524 (565)
+.+..+.+
T Consensus 171 ~~~~~~~~ 178 (365)
T TIGR00900 171 SALLIVSV 178 (365)
T ss_pred HHHHHHhc
Confidence 55544443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.8e-10 Score=112.13 Aligned_cols=147 Identities=20% Similarity=0.217 Sum_probs=130.5
Q ss_pred cceeecc-ccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchh-hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q psy17080 141 HTIISEW-DLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKK-ALMGSLVFQLVLGVLVAISPWFELYLVVRFFL 218 (565)
Q Consensus 141 ~~i~~~~-~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~-~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~ 218 (565)
+.+.++. +. +..+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.+...+.++.+.+.+..++.
T Consensus 199 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 275 (352)
T cd06174 199 PLYLQEVLGL---SAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLL 275 (352)
T ss_pred HHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3344333 66 7788899999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhh
Q psy17080 219 GFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWI 290 (565)
Q Consensus 219 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~ 290 (565)
|++.+...+....++.|..|+++|++..++.+....+|..+++.+...+ .+|+..+++.++..++..+..++
T Consensus 276 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 276 GFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence 9999999999999999999999999999999999999999999888765 48999999988887777665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=111.85 Aligned_cols=137 Identities=14% Similarity=0.099 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhhccc
Q psy17080 157 ESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMEL 236 (565)
Q Consensus 157 ~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~ 236 (565)
.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~ 330 (399)
T PRK05122 251 AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKR 330 (399)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 45667788889999999999999999999999999888888888888888888888999999999998888888888899
Q ss_pred cccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhccc
Q psy17080 237 VGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIMPE 293 (565)
Q Consensus 237 ~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~pe 293 (565)
.|+++|+++.++.+....+|..+++.+...+ .+|++.+++.++..++.++..+++++
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 331 VPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998888888777665554 37999999888777776666555544
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.9e-09 Score=105.72 Aligned_cols=173 Identities=8% Similarity=0.015 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcc-CcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Q psy17080 355 LIRLISFVQYIIWFSVYLVYYGLVLNL-SNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLAC 430 (565)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~ 430 (565)
.++...+..++.+......+..++.+. ++++.+. ........+..+++.+..|+++||+|||+.+.++.++.++++
T Consensus 8 ~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~ 87 (395)
T PRK10054 8 STSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGF 87 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHH
Confidence 344445555555555444443333333 3455443 334444556777888999999999999999998888887777
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHH
Q psy17080 431 LMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL-WHMQSINIHFPMGL 509 (565)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i-~~~~~~~~~~~~~~ 509 (565)
+++. +.++.+..++...+.+.+.+...+....+..|..|++.|+++.|+.+....+|.+++|.+ ..+...++..+|.+
T Consensus 88 ~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~ 166 (395)
T PRK10054 88 IAIP-LVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWL 166 (395)
T ss_pred HHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHH
Confidence 7666 555544444444455555555567788889999999999999999999999999999988 32334577888888
Q ss_pred HHHHHHHHHHHH-hhcccCC
Q psy17080 510 LGVVGVLGGLSV-LLLPDTT 528 (565)
Q Consensus 510 ~~~~~~i~~~~~-~~l~et~ 528 (565)
.+++.+++.++. +++|+.+
T Consensus 167 ~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 167 AAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 877777765544 4466554
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-08 Score=104.28 Aligned_cols=146 Identities=14% Similarity=-0.004 Sum_probs=111.7
Q ss_pred cCcCCCcHH---HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHH
Q psy17080 381 LSNIGGDVY---LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSS 457 (565)
Q Consensus 381 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (565)
.++++.+.. .......+...++.+..+.+.||+|||+++..+.++.+++.+... +.++.+...+..++.+++.+..
T Consensus 36 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~r~~~G~~~~~~ 114 (390)
T PRK03545 36 AQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSA-LAWNFTVLLISRIGIAFAHAIF 114 (390)
T ss_pred HhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHH
Confidence 445554443 333344555667788889999999999999999998888887776 6666666666666777777777
Q ss_pred HHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHHHHH-hhcccC
Q psy17080 458 NVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLW--HMQSINIHFPMGLLGVVGVLGGLSV-LLLPDT 527 (565)
Q Consensus 458 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~--~~~~~~~~~~~~~~~~~~~i~~~~~-~~l~et 527 (565)
.+....+..|.+|++.|+++.|+......+|..++|.+. ..+..+++..|++.+++.++..+.. ..+|+.
T Consensus 115 ~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 115 WSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 788889999999999999999999999999999999883 3456688888988888777665543 445654
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-09 Score=110.34 Aligned_cols=180 Identities=16% Similarity=0.187 Sum_probs=123.1
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHhhhhhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Q psy17080 349 DLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLG 425 (565)
Q Consensus 349 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~ 425 (565)
.+.+++.++...+...+..+.........+....+.+.+. ........+..+++.++.|++.||+|||+.+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~ 91 (417)
T PRK10489 12 LLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGT 91 (417)
T ss_pred HHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHH
Confidence 3445666666666555555554444444444444444333 3444555677788889999999999999988887776
Q ss_pred HHHHHHHHhh--c--CCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHH
Q psy17080 426 AGLACLMTLG--F--APGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQ 499 (565)
Q Consensus 426 ~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~ 499 (565)
.+++.+.+.. + .++.+...+..++.+++.+...+....+..|..|++.|+++.++.++...+|..++|.+ ...+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~ 171 (417)
T PRK10489 92 CGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA 171 (417)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 6665544321 1 22334445555666777776777788889999999999999999999999999999988 3345
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhhcccCC
Q psy17080 500 SINIHFPMGLLGVVGVLGGLSVLLLPDTT 528 (565)
Q Consensus 500 ~~~~~~~~~~~~~~~~i~~~~~~~l~et~ 528 (565)
..++...+.+.++..+++.++.+.+|+++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (417)
T PRK10489 172 AGGVAWNYGLAAAGTFITLLPLLRLPALP 200 (417)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 56677777777777666666666777654
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.3e-09 Score=89.85 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhh
Q psy17080 395 SGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMR 474 (565)
Q Consensus 395 ~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 474 (565)
.+++.+++.++.+++.||+|||+.+..+..+..++.+... ...+.+...+..++.+++.+...+....+..|.+|++.|
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 85 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFA-LSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEER 85 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhh
Confidence 3566778899999999999999999988888877777665 445556666667778888888888889999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHh-hccc
Q psy17080 475 NLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVL-LLPD 526 (565)
Q Consensus 475 ~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~-~l~e 526 (565)
+++.++.++...+|..++|.+ ...+..++...+.+.+++.+++.+... +.||
T Consensus 86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 86 GVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999988 333445666777777777766665543 4454
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-09 Score=111.05 Aligned_cols=152 Identities=14% Similarity=0.065 Sum_probs=114.0
Q ss_pred hhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy17080 377 LVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFA 453 (565)
Q Consensus 377 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (565)
.+...++++.+. ........++.+++.++.+++.||+|||+.+..+.++.+++.++.. +.++.+...+..++.+++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~ 118 (398)
T TIGR00895 40 APAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCA-LATNVTQLLILRFLAGLG 118 (398)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HccchHHHHHHHHHHhcc
Confidence 334444455443 3344455667788899999999999999999999888888777766 555656666667777888
Q ss_pred HHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHHH-HHhhcccCCC
Q psy17080 454 ISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLW--HMQSINIHFPMGLLGVVGVLGGL-SVLLLPDTTG 529 (565)
Q Consensus 454 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~--~~~~~~~~~~~~~~~~~~~i~~~-~~~~l~et~~ 529 (565)
.+...+...++..|.+|++.|+++.|+.+....+|..++|.+. ..+..++...+.+.+++.++..+ ...++||+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (398)
T TIGR00895 119 LGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESID 197 (398)
T ss_pred cccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCCh
Confidence 8888889999999999999999999999999999999999883 34556777777777655554443 4466777644
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.9e-08 Score=95.28 Aligned_cols=146 Identities=16% Similarity=0.072 Sum_probs=100.3
Q ss_pred eccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhh
Q psy17080 145 SEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVS 224 (565)
Q Consensus 145 ~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 224 (565)
+++++ +..+++.+....+...++..++.|.++||+|||+.-+...++.+++++ +-.+++++.++++|++.|++...
T Consensus 62 ~~yg~---~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSL 137 (354)
T PF05631_consen 62 ESYGF---SEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSL 137 (354)
T ss_pred HHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHH
Confidence 45777 778889999999999999999999999999999999999999998886 45568999999999999999998
Q ss_pred hHhhhhhhh-cccc----ccchhHHHHHHhh-hhhHHHHHHHHHHHHHhc-----chhHHHHHHHHHHHHHHHHh-hhcc
Q psy17080 225 IVFSGFVLC-MELV----GGKWLTIMGVMYL-FPVPVGYIAISGIAYYSH-----NWRLLQWVITIPTIFFLTLW-WIMP 292 (565)
Q Consensus 225 ~~~~~~~~i-~e~~----~~~~r~~~~~~~~-~~~~lG~~~~~~l~~~~~-----~Wr~~~~~~~~~~~~~~~~~-~~~p 292 (565)
.+.+--+++ .|.- |++..+...+... ...++-.++.+.++.... +-..+|.......++..++. ..-+
T Consensus 138 LfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 138 LFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhccc
Confidence 888877664 4543 2233333322222 222333344444554432 23557777655554444433 2334
Q ss_pred cc
Q psy17080 293 ES 294 (565)
Q Consensus 293 es 294 (565)
|.
T Consensus 218 EN 219 (354)
T PF05631_consen 218 EN 219 (354)
T ss_pred cc
Confidence 54
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.6e-10 Score=113.48 Aligned_cols=150 Identities=15% Similarity=0.045 Sum_probs=122.2
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|.+.++.++ +..+.++..+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+.-++.|
T Consensus 243 ~p~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 319 (406)
T PRK11551 243 LPSLLVGQGL---SRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAG 319 (406)
T ss_pred HHHHHHhCCC---ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4556666777 6777899999999999999999999999999999998887777777777777788888888888999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHhhhcc
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSH----NWRLLQWVITIPTIFFLTLWWIMP 292 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~----~Wr~~~~~~~~~~~~~~~~~~~~p 292 (565)
++.++..+...+++.|.+|+++|++..++.+....+|..+++.++..+. +|...+++.....++..+..+++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 320 LFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred HHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9888888888999999999999999999999999999999998877652 456666665555555554444443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.3e-09 Score=108.76 Aligned_cols=139 Identities=16% Similarity=0.118 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCc------hHHHHHHHHHHHHHHHHHHHHHHH
Q psy17080 390 LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPG------SFITISLAMVGKFAISSSNVIIPI 463 (565)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 463 (565)
.......++.+++.++.+++.||+|||+.+.++.++..++.++.. +.++ .+..++..++.+++.+..++...+
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 138 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASG-LSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAI 138 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH-HccCcccchHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 445556677889999999999999999999998888887777665 4333 245566677888999998999999
Q ss_pred hcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH--HH-----------------------HhhhhhHHHHHHHHHHHHH
Q psy17080 464 YTAELFPTKMRNLGVGASSVPAGVALILIPYLWH--MQ-----------------------SINIHFPMGLLGVVGVLGG 518 (565)
Q Consensus 464 ~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~--~~-----------------------~~~~~~~~~~~~~~~~i~~ 518 (565)
+.+|.+|++.|+++.++.+....+|.++++.+.. .. ..+|+.++.+.++.+++..
T Consensus 139 ~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~ 218 (502)
T TIGR00887 139 ITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLAL 218 (502)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888877622 11 1257777776666666666
Q ss_pred HHHhhcccCCC
Q psy17080 519 LSVLLLPDTTG 529 (565)
Q Consensus 519 ~~~~~l~et~~ 529 (565)
+..+++||+.+
T Consensus 219 ~~~~~lpESpr 229 (502)
T TIGR00887 219 YFRLTIPETPR 229 (502)
T ss_pred HHHHhCCCCHH
Confidence 66688999865
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.7e-09 Score=104.56 Aligned_cols=140 Identities=17% Similarity=0.185 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17080 388 VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAE 467 (565)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 467 (565)
..+......+...++.++.|++.||+|||+.+..+.++.+++.++.. +.++.+...+..++.+++.+...+....++.|
T Consensus 34 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~ 112 (352)
T PF07690_consen 34 IGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA-FASNFWLLLIARFLLGIGSGFFSPASNALIAD 112 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh-hhhhHHHHhhhccccccccccccccccccccc
Confidence 44555666778889999999999999999999999998888855554 43555667777788889988899999999999
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHH-hhcccCC
Q psy17080 468 LFPTKMRNLGVGASSVPAGVALILIPYLWH--MQSINIHFPMGLLGVVGVLGGLSV-LLLPDTT 528 (565)
Q Consensus 468 ~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~--~~~~~~~~~~~~~~~~~~i~~~~~-~~l~et~ 528 (565)
.+|++.|+++.|+.+....+|.+++|.+.. .+..++...+++.+++.++..++. +++++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~ 176 (352)
T PF07690_consen 113 WFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPP 176 (352)
T ss_dssp CCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---S
T ss_pred cchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcc
Confidence 999999999999999999999999998833 345678888999988888877643 4444433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-08 Score=103.15 Aligned_cols=148 Identities=16% Similarity=0.168 Sum_probs=114.7
Q ss_pred cCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHH
Q psy17080 381 LSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSS 457 (565)
Q Consensus 381 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (565)
.++++.+. ........++..++.++.|++.||+|||+.+..+.++.+++.++.. +.++.+...+..++.+++.+..
T Consensus 32 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~ 110 (385)
T TIGR00710 32 AADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA-LSNNIETLLVLRFVQAFGASAG 110 (385)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHcchhHH
Confidence 34444433 3445556677788899999999999999999999888888887776 5566666666677788888888
Q ss_pred HHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHH-hhcccCCC
Q psy17080 458 NVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSV-LLLPDTTG 529 (565)
Q Consensus 458 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~-~~l~et~~ 529 (565)
.+....+..|.+|++.|+++.|+.+....+|..++|.+ ...+..++...+.+.+++.++..+.. +..||++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 111 SVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 88889999999999999999999999999999999988 33455678888888777766665544 45676654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-08 Score=103.53 Aligned_cols=148 Identities=20% Similarity=0.129 Sum_probs=115.2
Q ss_pred cCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHH
Q psy17080 381 LSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSS 457 (565)
Q Consensus 381 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (565)
.++++.+. .+......++..++.+..+++.||+|||+.+..+.++.+++.++.. +.++.+...+.-++.+++.+..
T Consensus 35 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~~~ 113 (412)
T TIGR02332 35 GKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATM-FATGPESLYLLRILVGIAEAGF 113 (412)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhhH
Confidence 34555443 3444455566778889999999999999999999999888888877 6666666677777888888888
Q ss_pred HHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH-H-H------HhhhhhHHHHHHHHHHHHHH-HHhhcccCC
Q psy17080 458 NVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWH-M-Q------SINIHFPMGLLGVVGVLGGL-SVLLLPDTT 528 (565)
Q Consensus 458 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~-~-~------~~~~~~~~~~~~~~~~i~~~-~~~~l~et~ 528 (565)
.+....++.|.+|++.|+++.|+.+....+|.+++|.+.. . . ..+++..|.+.++..++..+ ..+++||++
T Consensus 114 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 114 LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 8888899999999999999999999999999999988832 2 1 24788888888777765544 446678876
Q ss_pred C
Q psy17080 529 G 529 (565)
Q Consensus 529 ~ 529 (565)
+
T Consensus 194 ~ 194 (412)
T TIGR02332 194 D 194 (412)
T ss_pred c
Confidence 4
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-08 Score=101.57 Aligned_cols=138 Identities=17% Similarity=0.158 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy17080 390 LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELF 469 (565)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 469 (565)
.......+...++.++.+.+.||+|||+.+..+.++.+++.++.. +.++.+..++..++.+++.+...+....++.|.+
T Consensus 59 ~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 137 (394)
T PRK10213 59 QSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVS-FANSFSLLLIGRACLGLALGGFWAMSASLTMRLV 137 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHH-HHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 334455667778899999999999999999999999988887776 5566677777778888888888899999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHH-hhcccCC
Q psy17080 470 PTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSV-LLLPDTT 528 (565)
Q Consensus 470 p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~-~~l~et~ 528 (565)
|++.|+.+.++......+|..++|.+ ...+..++...|.+.+++.++..+.. ..+||++
T Consensus 138 ~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 138 PPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 99999999999999999999999988 33455678888888776666554433 3456643
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-08 Score=102.82 Aligned_cols=152 Identities=14% Similarity=0.060 Sum_probs=112.6
Q ss_pred hhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy17080 377 LVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFA 453 (565)
Q Consensus 377 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (565)
.+...++++.+. ........+...++.++.|+++||+|||+.+..+.++.+++.++.. ..++.+...+..++.+++
T Consensus 26 lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~l~g~~ 104 (392)
T PRK10473 26 LPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS-LAETSSLFLAGRFLQGIG 104 (392)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHhh
Confidence 333344444443 2344455566778889999999999999999999888888877776 555555555566677777
Q ss_pred HHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHH-HhhcccCCC
Q psy17080 454 ISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWH--MQSINIHFPMGLLGVVGVLGGLS-VLLLPDTTG 529 (565)
Q Consensus 454 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~--~~~~~~~~~~~~~~~~~~i~~~~-~~~l~et~~ 529 (565)
.+...+....+..|.+|++.|+++.++.+....++..++|.+.. .+..++...+.+.+++.++..++ .+.+||++.
T Consensus 105 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 105 AGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred hhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 77777888899999999999999999999999999999998832 34567777788877776666554 356677644
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-09 Score=111.08 Aligned_cols=141 Identities=17% Similarity=0.022 Sum_probs=117.4
Q ss_pred cceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchh--HHHHHHHHHH
Q psy17080 141 HTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWF--ELYLVVRFFL 218 (565)
Q Consensus 141 ~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~--~~l~~~r~l~ 218 (565)
+...+++++ +..+.++..+.+.++..++.++.|+++||+|||+.+..+.++.+++.++..+.++. ..+++..++.
T Consensus 229 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (377)
T TIGR00890 229 KPYGQSLGL---SDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV 305 (377)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Confidence 334466676 66678889999999999999999999999999999999999888888887777643 3345667888
Q ss_pred hhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHH
Q psy17080 219 GFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFF 284 (565)
Q Consensus 219 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~ 284 (565)
|++.+...+....++.|.+|+++|++..++.+....+|..+++.+...+ .+|++.|++.++..++.
T Consensus 306 g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 9888888888888999999999999999999999999999999877654 47999988877766554
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-09 Score=108.32 Aligned_cols=146 Identities=14% Similarity=0.174 Sum_probs=117.8
Q ss_pred eeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhh
Q psy17080 144 ISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCV 223 (565)
Q Consensus 144 ~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 223 (565)
.++++. +..+.+++.+.......++.++.|++.||+|||+++..+.++..+..++..+.++.+.+++.+++.|++.+
T Consensus 227 ~~~~g~---~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 303 (375)
T TIGR00899 227 IHELGL---PDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIG 303 (375)
T ss_pred HHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677 66777888877777778889999999999999999988877766666666677788888889999999988
Q ss_pred hhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhccc
Q psy17080 224 SIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIMPE 293 (565)
Q Consensus 224 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~pe 293 (565)
...+....++.|..|+ +++.+.++.+....+|..+++.++..+ .+|+..+++.++..++..+..++++|
T Consensus 304 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 304 ILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 8888888889998875 567888998888889998888877654 37999999888877777666655543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-08 Score=103.52 Aligned_cols=170 Identities=12% Similarity=0.037 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q psy17080 355 LIRLISFVQYIIWFSVYLVYYGLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACL 431 (565)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~ 431 (565)
.++...+..++..+..............+.+.+. .+......+...+..++.|++.||+|||+++.++.++.+++.+
T Consensus 4 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~ 83 (393)
T PRK11195 4 GFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCL 83 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHH
Confidence 4444444444444433333222222233444332 3344455567778889999999999999999999988877766
Q ss_pred HHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhHHHHH
Q psy17080 432 MTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLW-HMQSINIHFPMGLL 510 (565)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~-~~~~~~~~~~~~~~ 510 (565)
... +..+. .+..++.+++.+...|...+++.|.+|++.|+++.|+.++...+|.+++|.+. .+.+..+..++.+.
T Consensus 84 ~~~-~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~ 159 (393)
T PRK11195 84 LML-FGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVC 159 (393)
T ss_pred HHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 32222 34455678888888999999999999999999999999999999999999982 22233344455555
Q ss_pred HHHHHHHHHHHhhcccCC
Q psy17080 511 GVVGVLGGLSVLLLPDTT 528 (565)
Q Consensus 511 ~~~~~i~~~~~~~l~et~ 528 (565)
+.+.+++.+..+.+||.+
T Consensus 160 ~~~~~~~~~~~~~l~~~~ 177 (393)
T PRK11195 160 ALIYLLAALFNLFIPRLG 177 (393)
T ss_pred HHHHHHHHHHHhcCCCCc
Confidence 544444545556677754
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.9e-10 Score=114.39 Aligned_cols=144 Identities=12% Similarity=0.045 Sum_probs=116.0
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccc--cchhhHHH--HHHHHHHHHHHHHhcchhHHHHHHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKF--GRKKALMG--SLVFQLVLGVLVAISPWFELYLVVR 215 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~--Grr~~l~~--~~~l~~~~~~~~~~~~~~~~l~~~r 215 (565)
.+...+++++ +..+.+++.++..++..++.++.|+++||. ++|+...+ +.++.+++.++..+.++++.+++.+
T Consensus 264 l~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~ 340 (455)
T TIGR00892 264 LVPYAKDKGV---DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYC 340 (455)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 4555567777 778889999999999999999999999984 33433333 3444455556667788999999999
Q ss_pred HHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHH
Q psy17080 216 FFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS----HNWRLLQWVITIPTIFFLT 286 (565)
Q Consensus 216 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~~Wr~~~~~~~~~~~~~~~ 286 (565)
++.|++.+...+...+++.|.+|++++++..++.+....+|.+++|.++..+ .+|++.|++.++..++..+
T Consensus 341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888764 2699999888776555443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-08 Score=104.66 Aligned_cols=138 Identities=11% Similarity=0.111 Sum_probs=105.7
Q ss_pred hhhhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q psy17080 374 YYGLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVG 450 (565)
Q Consensus 374 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (565)
.+..+...++++.+. ........++..++.++.|++.||+|||+.+..+.++.+++.++.. +.++.+...+..++.
T Consensus 38 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~~l~~~r~l~ 116 (426)
T PRK12307 38 FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSG-LASGVIMLTLSRFIV 116 (426)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHH
Confidence 333344334444332 3444556677788899999999999999999999999988887776 556666677777788
Q ss_pred HHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHH
Q psy17080 451 KFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLW--HMQSINIHFPMGLLGV 512 (565)
Q Consensus 451 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~--~~~~~~~~~~~~~~~~ 512 (565)
+++.+..++....++.|.+|++.|+++.|+......+|.+++|.+. ..+..++...+++...
T Consensus 117 G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 117 GMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL 180 (426)
T ss_pred HHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 8888888889999999999999999999999999999999988772 2344577777766443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.6e-08 Score=102.09 Aligned_cols=138 Identities=17% Similarity=0.125 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy17080 391 NTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFP 470 (565)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 470 (565)
...+..++..++.++.|.++||+|||+++..+.++.+++.++.. +.++.+..++.-++.+++.+...+..+.+..|.+|
T Consensus 56 ~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~-~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~ 134 (413)
T PRK15403 56 SVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATL-FTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFG 134 (413)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445567778889999999999999999999888888887776 56666666666677777766655667788899999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHH-HhhcccCCC
Q psy17080 471 TKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLS-VLLLPDTTG 529 (565)
Q Consensus 471 ~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~-~~~l~et~~ 529 (565)
++.|++++++.+....+|..++|.+ ...+..++...|++.+++.+++.+. .+.+||++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 135 QTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999999988 3344568888898888887777654 356788754
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.7e-08 Score=97.79 Aligned_cols=137 Identities=17% Similarity=0.055 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17080 388 VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAE 467 (565)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 467 (565)
.......++++..++.++...+.+|+.||+++...+.+..++.++.. +.++.+...+.-++.++..+..+++..+.+.+
T Consensus 50 aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~a-lAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~ 128 (394)
T COG2814 50 AGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSA-LAPSFAVLLLARALAGLAHGVFWSIAAALAAR 128 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788889999999999999999999999999999999988 88888888888899999999999999999999
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHH-Hhhcc
Q psy17080 468 LFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLS-VLLLP 525 (565)
Q Consensus 468 ~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~-~~~l~ 525 (565)
+.|+++|++++++..+...++.+++.-+ ..-+..||+..|+..+++++++.+. ...+|
T Consensus 129 lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 129 LVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999988888887655 4456789999999999999888765 46788
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.6e-08 Score=100.67 Aligned_cols=166 Identities=10% Similarity=0.067 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHhhhhhhhc-cCcCCCcHHHHHHHH---HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhc
Q psy17080 361 FVQYIIWFSVYLVYYGLVLN-LSNIGGDVYLNTIIS---GIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF 436 (565)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~ 436 (565)
...++.+......+...+.+ .+..+.+......+. .+......++.|.++||+|||+.+..+.++.+++++... +
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~-~ 95 (400)
T PRK11646 17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA-I 95 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH-H
Confidence 34444444444444333333 345555554444333 445556678899999999999999999999998888876 5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHH
Q psy17080 437 APGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL-WHMQSINIHFPMGLLGVVGV 515 (565)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i-~~~~~~~~~~~~~~~~~~~~ 515 (565)
.++.+...+..++.+++.+...+...+++.+.+|++.|+++.|+.+....+|..++|.+ ..+...++...|++.+++.+
T Consensus 96 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~ 175 (400)
T PRK11646 96 AHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFV 175 (400)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55556666666677777777778888889999999999999999999999999999988 22335677778887777666
Q ss_pred HHHHH-HhhcccC
Q psy17080 516 LGGLS-VLLLPDT 527 (565)
Q Consensus 516 i~~~~-~~~l~et 527 (565)
+..++ .+++||.
T Consensus 176 ~~~i~~~~~~~~~ 188 (400)
T PRK11646 176 LAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHhCCcc
Confidence 65544 3455653
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.8e-08 Score=100.92 Aligned_cols=148 Identities=12% Similarity=0.029 Sum_probs=115.2
Q ss_pred ccCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH
Q psy17080 380 NLSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISS 456 (565)
Q Consensus 380 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (565)
..++++.+ .........++..++.++.|++.||+|||+.+..+..+.+++.++.. +.++.+...+..++.+++.+.
T Consensus 29 ~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~-~~~~~~~l~~~r~l~G~~~~~ 107 (382)
T PRK10091 29 LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFT-LSSSYLMLAIGRLVSGFPHGA 107 (382)
T ss_pred HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHhhhHH
Confidence 34444433 33445566778889999999999999999999999999988888777 667777777777888888888
Q ss_pred HHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHH-HhhcccCC
Q psy17080 457 SNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLS-VLLLPDTT 528 (565)
Q Consensus 457 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~-~~~l~et~ 528 (565)
..+....+..|.+|++.|+.+.++......+|..++|.+ ...+..++...|.+.+++.++..+. ...+||.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 108 FFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 778888888999999999999999988888999988877 3344567888888888776665543 35577754
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.9e-09 Score=107.62 Aligned_cols=133 Identities=16% Similarity=0.043 Sum_probs=115.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhhccc
Q psy17080 157 ESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMEL 236 (565)
Q Consensus 157 ~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~ 236 (565)
.++..+.+.++..+++++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+...+.+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45667778888899999999999999999999999999888888888888888888999999999998888888889999
Q ss_pred cccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhh
Q psy17080 237 VGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWW 289 (565)
Q Consensus 237 ~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~ 289 (565)
+++++|+++.++.+....+|..+++.+...+ .+|+..|++.++..++..+..+
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988877664 3899999988877666655543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-09 Score=104.17 Aligned_cols=144 Identities=13% Similarity=0.069 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17080 388 VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAE 467 (565)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 467 (565)
.........+..-++.++.|.++||.+.|..+..+++++++..+++. +.++.+.+.++..+-+.+.+..+|.....+..
T Consensus 66 lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~G-fs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~ 144 (448)
T COG2271 66 LGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFG-FSPSLFLFAVLWVLNGWFQGMGWPPCARTITH 144 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 34555566677778999999999999999999999999999999999 77777788888889999999999999999999
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHhhhhhHHHHHHHHHHHHHHHH-hhcccC---CCCCc
Q psy17080 468 LFPTKMRNLGVGASSVPAGVALILIPYLWH----MQSINIHFPMGLLGVVGVLGGLSV-LLLPDT---TGLAD 532 (565)
Q Consensus 468 ~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~----~~~~~~~~~~~~~~~~~~i~~~~~-~~l~et---~~~~~ 532 (565)
-+|++.||+..++-|+..++|+.+.|.+.. ..+.++...|++-++++++.+++. +.+++| .++|+
T Consensus 145 Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ 217 (448)
T COG2271 145 WFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP 217 (448)
T ss_pred HcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC
Confidence 999999999999999999999998888742 234578889999998888776655 555544 34653
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=108.13 Aligned_cols=139 Identities=17% Similarity=0.197 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAEL 468 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 468 (565)
.+...+..++.+++.++.|+++||+|||+++.++.++.+++.++.. +.++.+...+..++.+++.+...+...+++.|.
T Consensus 130 ~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~ 208 (505)
T TIGR00898 130 DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTA-FSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEF 208 (505)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHhhccchHHHHHHHhhee
Confidence 4455666778889999999999999999999999988888887777 667777777778888999988899999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhcccCCC
Q psy17080 469 FPTKMRNLGVGASSVPAGVALILIPYLWHMQSINIHFPMGLLGVVGVLGGLSVLLLPDTTG 529 (565)
Q Consensus 469 ~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~et~~ 529 (565)
+|++.|+.+.++......+|.+++|.+..... ++...+++.++..++..+..+++||+.+
T Consensus 209 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-~wr~~~~~~~i~~~~~~~~~~~~~esp~ 268 (505)
T TIGR00898 209 LPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP-DWRWLQLAVSLPTFLFFLLSWFVPESPR 268 (505)
T ss_pred cChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 99999999999998888899999988743222 3777788888777777777788888753
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-09 Score=108.76 Aligned_cols=133 Identities=14% Similarity=0.094 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhhccc
Q psy17080 157 ESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMEL 236 (565)
Q Consensus 157 ~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~ 236 (565)
.+++.+++.++..++.++.|+++||+|||+.+..+.++..++.+...+.++.+.+++.+++.|++.+...+...+++.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 46666777888889999999999999999999999888888888788888888899999999999999999999999999
Q ss_pred cccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhh
Q psy17080 237 VGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWW 289 (565)
Q Consensus 237 ~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~ 289 (565)
.++++|++..++......+|..++|.+++.+ .+|+..|++.++..++..+..+
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888899999988887765 3799999998877776655543
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.1e-09 Score=110.23 Aligned_cols=267 Identities=15% Similarity=0.106 Sum_probs=179.0
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcc-------------
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISP------------- 206 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~------------- 206 (565)
..+|.+.|++ ++.+.|++.+.+=+|..+...+..+..-|..|-+.+-+++++++++++++++-+
T Consensus 120 IttiErRF~i---~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~ 196 (735)
T KOG3626|consen 120 ITTIERRFKI---SSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVI 196 (735)
T ss_pred hhhhhhhcCC---CCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhh
Confidence 7888999999 888899999999999999999999999999999999999999999999887630
Q ss_pred ------h--------------------------------hH-HHHHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHH
Q psy17080 207 ------W--------------------------------FE-LYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGV 247 (565)
Q Consensus 207 ------~--------------------------------~~-~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~ 247 (565)
+ ++ .++++.++.|+|....++...+|+-|.+.+++-....+
T Consensus 197 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlg 276 (735)
T KOG3626|consen 197 KQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLG 276 (735)
T ss_pred hccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHH
Confidence 0 12 56778999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhc----------------------chhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHH
Q psy17080 248 MYLFPVPVGYIAISGIAYYSH----------------------NWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNK 305 (565)
Q Consensus 248 ~~~~~~~lG~~~~~~l~~~~~----------------------~Wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~ 305 (565)
+......+|+++|-+++.+.. .|..-|++.+.+.++..+.++++|...+- .++..
T Consensus 277 i~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~---~~~~~ 353 (735)
T KOG3626|consen 277 ILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPK---SQKRK 353 (735)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcc---ccccc
Confidence 999999999998888876531 25666777777777777777888765321 11110
Q ss_pred HHHHHHHHHHHHcC-CCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHH-HhhhhhhhccCc
Q psy17080 306 EAMKILGDAAKFNS-RKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVY-LVYYGLVLNLSN 383 (565)
Q Consensus 306 ~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 383 (565)
++++ .+.....++ .+......+ ..++-....+.+++||.+...++...+-..... +..|..-+...+
T Consensus 354 ~~~~-~~~~k~~~~~~~~~~~~~~----------~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Q 422 (735)
T KOG3626|consen 354 RARD-LHVLKTESGGAKSDKTFGK----------KIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQ 422 (735)
T ss_pred hhhh-hcccccccccccCCcchhh----------hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHH
Confidence 0000 000000000 000000000 001122356778888877666655544333322 222333344445
Q ss_pred CCCcHHHHHHHHHHHH----HHHHHHHHHHHhhcCC--hHHHHHHH
Q psy17080 384 IGGDVYLNTIISGIVE----FPAIVISIFILLKMGR--RRPLCLTT 423 (565)
Q Consensus 384 ~~~~~~~~~~~~~~~~----~~~~~~~~~l~dr~gr--r~~l~~~~ 423 (565)
++.+.+.+..+.+... .+|.+++|++++|+.- |....+.+
T Consensus 423 fg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~ 468 (735)
T KOG3626|consen 423 FGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVI 468 (735)
T ss_pred cCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHH
Confidence 6666666666555444 4567888999998753 44443333
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.2e-08 Score=102.73 Aligned_cols=155 Identities=13% Similarity=0.132 Sum_probs=115.0
Q ss_pred HhhhhhhhccCcCCCcHH---HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHH
Q psy17080 372 LVYYGLVLNLSNIGGDVY---LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAM 448 (565)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (565)
......+...++++.+.. .......+...++.++.|++.||+|||+.+..+..+.+++.++.. +.++.+..++..+
T Consensus 28 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 106 (471)
T PRK10504 28 IVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCA-LSGTLNELLLARV 106 (471)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHH
Confidence 333344445555665543 333444566678889999999999999999988888777776665 5566566667777
Q ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHH-hhcc
Q psy17080 449 VGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSV-LLLP 525 (565)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~-~~l~ 525 (565)
+.+++.+...+....++.|.+|++.|+++.|+.+....+|..++|.+ ...+..++...|.+...+..++.++. ...|
T Consensus 107 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 107 LQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88888888888889999999999999999999999999999999988 33455677888888776666665544 3444
Q ss_pred cC
Q psy17080 526 DT 527 (565)
Q Consensus 526 et 527 (565)
+.
T Consensus 187 ~~ 188 (471)
T PRK10504 187 NY 188 (471)
T ss_pred Cc
Confidence 43
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-08 Score=105.25 Aligned_cols=153 Identities=16% Similarity=0.215 Sum_probs=118.4
Q ss_pred hhhhccCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q psy17080 376 GLVLNLSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKF 452 (565)
Q Consensus 376 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (565)
..+...++++.+ ..+......++.+++.++.+++.||+|||+.+..+.++.+++.++.. ..++.+..++..++.++
T Consensus 24 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~G~ 102 (485)
T TIGR00711 24 AIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG-VAPNLELMIIFRVIQGF 102 (485)
T ss_pred HHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHh
Confidence 344444444433 34555667778888999999999999999999999999888888777 66666677777778888
Q ss_pred HHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHH-hhcccCCC
Q psy17080 453 AISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSV-LLLPDTTG 529 (565)
Q Consensus 453 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~-~~l~et~~ 529 (565)
+.+...+....++.|.+|++.|+++.++..+...+|..++|.+ ...+..++...|++.+.+.++..++. +++||+++
T Consensus 103 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 103 GGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred hhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence 8888888999999999999999999999999999999999988 33455677778887777666655544 45666443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-08 Score=101.44 Aligned_cols=132 Identities=14% Similarity=0.045 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy17080 390 LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELF 469 (565)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 469 (565)
.......++..++.++.+++.||+|||+.+..+.++.+++.++.. +.++.+...+..++.+++.+...+....++.|.+
T Consensus 46 ~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~ 124 (394)
T PRK03699 46 NTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLM-FSHSLALFSIAMFVLGVVSGITMSIGTFLITHVY 124 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HcchHHHHHHHHHHHHHhhHhhccchhHHhhhhc
Confidence 344455667788899999999999999999998888888877776 5555566666667778877777778888899999
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHH--HHH-HhhhhhHHHHHHHHHHHHHHHHh
Q psy17080 470 PTKMRNLGVGASSVPAGVALILIPYLW--HMQ-SINIHFPMGLLGVVGVLGGLSVL 522 (565)
Q Consensus 470 p~~~r~~~~g~~~~~~~lg~~i~p~i~--~~~-~~~~~~~~~~~~~~~~i~~~~~~ 522 (565)
|++.|+.+.++.+....+|+.++|.+. ... ..+++..|.+.+++.++..++.+
T Consensus 125 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 125 EGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTL 180 (394)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888888888888772 222 35788888887777666554443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.2e-08 Score=102.97 Aligned_cols=141 Identities=12% Similarity=0.139 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhc--------CCch---HHHHHHHHHHHHHHHHH
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF--------APGS---FITISLAMVGKFAISSS 457 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~~ 457 (565)
.+......++.+++.++.|++.||+|||+++.++.++.+++.+..... .++. ...++.-++.+++.+..
T Consensus 58 ~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~ 137 (479)
T PRK10077 58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLA 137 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHH
Confidence 345556667888999999999999999999999888877766655410 0111 23345567788899999
Q ss_pred HHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH-H---------HHhhhhhHHHHHHHHHHHHHHHHhhcccC
Q psy17080 458 NVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWH-M---------QSINIHFPMGLLGVVGVLGGLSVLLLPDT 527 (565)
Q Consensus 458 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~-~---------~~~~~~~~~~~~~~~~~i~~~~~~~l~et 527 (565)
.+...++++|.+|++.|+.++|+.+....+|.++++.+.. . ...+|+..|++.++..++..+..+++||+
T Consensus 138 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s 217 (479)
T PRK10077 138 SMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPET 217 (479)
T ss_pred hhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999988899888876621 1 23578888888877777766666788887
Q ss_pred CC
Q psy17080 528 TG 529 (565)
Q Consensus 528 ~~ 529 (565)
.+
T Consensus 218 ~~ 219 (479)
T PRK10077 218 PR 219 (479)
T ss_pred cH
Confidence 53
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=8e-09 Score=107.84 Aligned_cols=147 Identities=16% Similarity=0.114 Sum_probs=105.9
Q ss_pred ccce-eeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHH--HHHhcchhHHHHHHHH
Q psy17080 140 GHTI-ISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGV--LVAISPWFELYLVVRF 216 (565)
Q Consensus 140 ~~~i-~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~--~~~~~~~~~~l~~~r~ 216 (565)
.|.. .+++++ +..+.++..+.+.++..++.++.|+++||+|||+.+.....+..++.. .....++.+.+.+.++
T Consensus 281 ~p~yl~~~~g~---s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (467)
T PRK09556 281 SPVYAFQELGF---SKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLF 357 (467)
T ss_pred HHHHHHHccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 4544 456888 777889999999999999999999999999999877665544443322 2234456667778888
Q ss_pred HHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHH-HHHHHHHHHHHh---------------cchhHHHHHHHHH
Q psy17080 217 FLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPV-GYIAISGIAYYS---------------HNWRLLQWVITIP 280 (565)
Q Consensus 217 l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~l-G~~~~~~l~~~~---------------~~Wr~~~~~~~~~ 280 (565)
+.|++..+..........|.+|++.|+.+.++.+....+ |..+++.+.+.+ .+|+..|++..+.
T Consensus 358 ~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~ 437 (467)
T PRK09556 358 ALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIA 437 (467)
T ss_pred HHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHH
Confidence 888765444444446677999999999999999877775 656666554433 2599999887666
Q ss_pred HHHHHHHhh
Q psy17080 281 TIFFLTLWW 289 (565)
Q Consensus 281 ~~~~~~~~~ 289 (565)
.++..+..+
T Consensus 438 ~~~~~~~~~ 446 (467)
T PRK09556 438 AIGCICLMA 446 (467)
T ss_pred HHHHHHHHH
Confidence 666555444
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.8e-08 Score=101.71 Aligned_cols=132 Identities=13% Similarity=0.077 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCch--------HHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17080 396 GIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGS--------FITISLAMVGKFAISSSNVIIPIYTAE 467 (565)
Q Consensus 396 ~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~e 467 (565)
.++..++.++.|++.||+|||+.+..+.++.+++.++.. +.++. ....+.-++.|++.+..++...+++.|
T Consensus 73 ~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e 151 (432)
T PRK10406 73 FLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIA-CLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSE 151 (432)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh-hcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHH
Confidence 344558899999999999999999999999998888877 44432 234555667888888889999999999
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHH-HH---------HHhhhhhHHHHHHHHHHHHHHHHhhcccCC
Q psy17080 468 LFPTKMRNLGVGASSVPAGVALILIPYLW-HM---------QSINIHFPMGLLGVVGVLGGLSVLLLPDTT 528 (565)
Q Consensus 468 ~~p~~~r~~~~g~~~~~~~lg~~i~p~i~-~~---------~~~~~~~~~~~~~~~~~i~~~~~~~l~et~ 528 (565)
.+|++.|+...++.......|.++++.+. .. ...+|+.+|.+.++..++...+...+||++
T Consensus 152 ~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~ 222 (432)
T PRK10406 152 VAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETS 222 (432)
T ss_pred hCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999988777777777766551 11 246788888887776665544444455543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.6e-09 Score=106.29 Aligned_cols=139 Identities=14% Similarity=0.036 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAEL 468 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 468 (565)
........++..++.++.|+++||+|||+.+..+.++.+++.++.. +.++.+...+..++.+++.+...+...+++.|.
T Consensus 33 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 111 (379)
T TIGR00881 33 GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFG-FSTSLWVMAALWALNGIFQGMGWPPCGRTVTKW 111 (379)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhccccCCchHHHHHHh
Confidence 4455566677888999999999999999999999988888888777 556666666677777888888888889999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHH-H--HHHHHhhhhhHHHHHHHHHHHHHHH-HhhcccCC
Q psy17080 469 FPTKMRNLGVGASSVPAGVALILIPY-L--WHMQSINIHFPMGLLGVVGVLGGLS-VLLLPDTT 528 (565)
Q Consensus 469 ~p~~~r~~~~g~~~~~~~lg~~i~p~-i--~~~~~~~~~~~~~~~~~~~~i~~~~-~~~l~et~ 528 (565)
+|++.|+.+.++.+....+|..++|. + ......++...+.+.+++.++..++ .++.||++
T Consensus 112 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 112 FSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred cCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence 99999999999999999999999994 4 2234456777777777766655444 34556554
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.8e-08 Score=102.35 Aligned_cols=137 Identities=13% Similarity=0.073 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy17080 390 LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELF 469 (565)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 469 (565)
.......++..++.++.|++.||+|||+.+..+.++.+++.++.. +.++.+...+..++.+++.+..++....++.|.+
T Consensus 59 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~ 137 (496)
T PRK03893 59 SLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACG-FAPGYWTLFIARLVIGMGMAGEYGSSATYVIESW 137 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455567778899999999999999999999888888887777 5555566666777788888888888889999999
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhcccC
Q psy17080 470 PTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLLPDT 527 (565)
Q Consensus 470 p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~et 527 (565)
|++.|+.+.++.+....+|..++|.+ ...+..++...+.+..+..++..+....+||+
T Consensus 138 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~ 197 (496)
T PRK03893 138 PKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEA 197 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999988 33445567766665433333332233445554
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=9e-08 Score=100.64 Aligned_cols=153 Identities=14% Similarity=0.031 Sum_probs=114.1
Q ss_pred hhhhhccCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q psy17080 375 YGLVLNLSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGK 451 (565)
Q Consensus 375 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (565)
...+....+++.+ ..+......++...+.+..|+++||+|||+.+..+.++.+++.++.. +.++.+..++.-++.+
T Consensus 27 ~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~-~a~~~~~li~~r~l~G 105 (495)
T PRK14995 27 VAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAA-FSPTASWLIATRALLA 105 (495)
T ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence 3344444445433 33444455666677888999999999999999999999998888877 6677777777777788
Q ss_pred HHHHHHHHHHHHhccccc-chhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHH-hhcccC
Q psy17080 452 FAISSSNVIIPIYTAELF-PTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSV-LLLPDT 527 (565)
Q Consensus 452 ~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~-~~l~et 527 (565)
++.+...+.......+.+ |++.|+++.|+......+|..++|.+ ...+..+|++.|++...+.++..++. +++|+.
T Consensus 106 ~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 106 IGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 888877777666665654 77899999999999999999999998 34456788888888776666655543 556664
Q ss_pred C
Q psy17080 528 T 528 (565)
Q Consensus 528 ~ 528 (565)
+
T Consensus 186 ~ 186 (495)
T PRK14995 186 A 186 (495)
T ss_pred C
Confidence 3
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.6e-08 Score=99.11 Aligned_cols=139 Identities=14% Similarity=0.014 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy17080 390 LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELF 469 (565)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 469 (565)
.......++..++.++.|.+.||+|||+.+..+..+.+++.+... +.++.+..++..++.+++.+...+.......|.+
T Consensus 52 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~ 130 (406)
T PRK15402 52 TSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAIL-LAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESF 130 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHh
Confidence 334455667778889999999999999999998888888877766 5555566666666777777777778888899999
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHH-hhcccCCC
Q psy17080 470 PTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSV-LLLPDTTG 529 (565)
Q Consensus 470 p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~-~~l~et~~ 529 (565)
|++.|..+.++......++..++|.+ ...+..++...+++.+++.+++.+.. ...||++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 131 EEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 99999999998888888888888887 23345678888888777777665543 45677654
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.93 E-value=3e-08 Score=103.37 Aligned_cols=136 Identities=11% Similarity=0.045 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLK-MGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAE 467 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr-~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 467 (565)
........+...++.+++|+++|| +|||+.+.++.++.+++.+++. +.++.+...+..++.+++.+...+...++.++
T Consensus 51 g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~ 129 (475)
T TIGR00924 51 FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLA-MSIYPDLIFYGLGTIAVGSGLFKANPSSMVGK 129 (475)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHH-hcccHhHHHHHHHHHHhccccccCCHHHHHHH
Confidence 344555667778899999999999 8999999999999998888777 55554444455556677777777888888899
Q ss_pred ccchhh---hhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhcc
Q psy17080 468 LFPTKM---RNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLLP 525 (565)
Q Consensus 468 ~~p~~~---r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 525 (565)
.+|++. |+.+.++.+...++|.+++|.+ ...+..++...|.+.++..+++.+..++.+
T Consensus 130 ~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 130 LYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred hcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcc
Confidence 998754 8889999999999999999988 334556788888887766666555544444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.2e-08 Score=101.96 Aligned_cols=141 Identities=15% Similarity=0.184 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCc--hHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17080 388 VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPG--SFITISLAMVGKFAISSSNVIIPIYT 465 (565)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (565)
.........++..++.++.|++.||+|||+.+..+.++.+++.++....... .+..++..++.+++.+...+....++
T Consensus 73 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i 152 (481)
T TIGR00879 73 WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYL 152 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHH
Confidence 3455566677888999999999999999999999988888877776522222 23566667788888888888899999
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHH---HH--HHhhhhhHHHHHHHHHHHHHHHHhhcccCC
Q psy17080 466 AELFPTKMRNLGVGASSVPAGVALILIPYLW---HM--QSINIHFPMGLLGVVGVLGGLSVLLLPDTT 528 (565)
Q Consensus 466 ~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~---~~--~~~~~~~~~~~~~~~~~i~~~~~~~l~et~ 528 (565)
.|.+|++.|+.+.++.+....+|.+++|.+. .. ...+++..|++.++..++..+..+++||+.
T Consensus 153 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~ 220 (481)
T TIGR00879 153 SEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESP 220 (481)
T ss_pred HccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 9999999999999999999999999999886 22 345677788886666666666667788864
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-08 Score=103.53 Aligned_cols=145 Identities=14% Similarity=0.128 Sum_probs=114.3
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.|...++.+. +....++..+.+.++..+++++.|++.||+|||+++..+..+..++.+... + ...+...+++.|
T Consensus 223 lp~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g 296 (381)
T PRK03633 223 MPLYLNHQGM---SDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILG 296 (381)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHH
Confidence 4555566676 667788899999999999999999999999999999888888777665443 2 234455778888
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhh
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWI 290 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~ 290 (565)
++.....|...+++.|..|+++++...+....++.+|.+++|.+++.+ .+|++.|++.+...++..+..+.
T Consensus 297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 887788899999999999988888777887788899999999887765 47889998887777665555443
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=5e-09 Score=99.81 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAEL 468 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 468 (565)
+.....+++..++.++..|.++||+|||.++.++.+..++..++.+ ...+...++..-+++|..-+. .++..++++|+
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~-~S~~F~afv~aR~l~Gi~kgn-l~v~rAiisdV 148 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWA-LSRNFAAFVLARFLGGIFKGN-LSVIRAIISDV 148 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhccCc-hHHHHHHHHhh
Confidence 3445567788899999999999999999999999999888766666 444332222224555555544 47888999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHH-HHHHH---hh----hhhHHHHHHHHHHH-HHHHHhhcccCCC
Q psy17080 469 FPTKMRNLGVGASSVPAGVALILIPYL-WHMQS---IN----IHFPMGLLGVVGVL-GGLSVLLLPDTTG 529 (565)
Q Consensus 469 ~p~~~r~~~~g~~~~~~~lg~~i~p~i-~~~~~---~~----~~~~~~~~~~~~~i-~~~~~~~l~et~~ 529 (565)
++++.|+.+++..++..++|.++||.+ ..+.. .. +..|-++..+++.. ..+..+++|||..
T Consensus 149 ~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~ 218 (451)
T KOG2615|consen 149 VSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP 218 (451)
T ss_pred cChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 999999999999999999999999999 22222 11 22222222233333 2334588999966
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1e-07 Score=99.04 Aligned_cols=140 Identities=13% Similarity=-0.040 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCC----chHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAP----GSFITISLAMVGKFAISSSNVIIPIY 464 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (565)
........++..++.++.|++.||+|||+++.++.++.+++.++.. +.+ +.+..++..++.+++.+..++.....
T Consensus 66 g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~ 144 (452)
T PRK11273 66 GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG-FVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRT 144 (452)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHH-hhhcccccHHHHHHHHHHHHHHHhccchHHHHH
Confidence 3444556677788899999999999999999999988888877666 322 23344555566677777777777777
Q ss_pred cccccchhhhhhHHHHHHHHHHHHH-HHHHHHH--HHHHhhhhhHHHHHHHHHHHHHH-HHhhcccCCC
Q psy17080 465 TAELFPTKMRNLGVGASSVPAGVAL-ILIPYLW--HMQSINIHFPMGLLGVVGVLGGL-SVLLLPDTTG 529 (565)
Q Consensus 465 ~~e~~p~~~r~~~~g~~~~~~~lg~-~i~p~i~--~~~~~~~~~~~~~~~~~~~i~~~-~~~~l~et~~ 529 (565)
+.|.+|++.|+++.|+.+....+|+ +.+|.+. .....+|...|++.+++.++..+ ..+++||+.+
T Consensus 145 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~ 213 (452)
T PRK11273 145 MVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQ 213 (452)
T ss_pred HHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHh
Confidence 8899999999999999988888886 4556542 22234677788887776666544 4466777543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2e-07 Score=97.40 Aligned_cols=134 Identities=13% Similarity=0.060 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy17080 391 NTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFP 470 (565)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 470 (565)
......++..++.++.|++.||+|||+++..+.++.+++.++.. +.++.+...+..++.+++.+.. .....+++|.+|
T Consensus 76 ~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~-~~~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~ 153 (476)
T PLN00028 76 AGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMS-LVSSATGFIAVRFFIGFSLATF-VSCQYWMSTMFN 153 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcC
Confidence 34445566778889999999999999999988888887777666 5555555555555666666543 334567889999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH----H-HH------HhhhhhHHHHHHHHHHHHHHHHhhccc
Q psy17080 471 TKMRNLGVGASSVPAGVALILIPYLW----H-MQ------SINIHFPMGLLGVVGVLGGLSVLLLPD 526 (565)
Q Consensus 471 ~~~r~~~~g~~~~~~~lg~~i~p~i~----~-~~------~~~~~~~~~~~~~~~~i~~~~~~~l~e 526 (565)
++.|+.+.|+.+....+|..+++.+. . .. ..+|+..|.+.+++.++..++.+++++
T Consensus 154 ~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~ 220 (476)
T PLN00028 154 GKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQ 220 (476)
T ss_pred hhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999877777766665441 1 11 136888899888888776666555544
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-08 Score=103.73 Aligned_cols=147 Identities=11% Similarity=0.038 Sum_probs=103.6
Q ss_pred eccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHh---c-chhHHHHHHHHHHhh
Q psy17080 145 SEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAI---S-PWFELYLVVRFFLGF 220 (565)
Q Consensus 145 ~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~---~-~~~~~l~~~r~l~G~ 220 (565)
+++++ +......+.....+...++.++.|+++||+|||++++.+.++..++.+.... . ++.+.+++..++.|+
T Consensus 279 ~~~g~---s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (438)
T PRK09952 279 QNLGL---PRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI 355 (438)
T ss_pred HhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 44565 4333344445556667788899999999999999988887766555433322 2 234455556677788
Q ss_pred hhhhhHhhhhhhhccccccchhHHHHHHh-hhhhHHHHHHHHHHHHHh-----cchhHHHHHHHHHHHHHHHHhhhcccc
Q psy17080 221 FCVSIVFSGFVLCMELVGGKWLTIMGVMY-LFPVPVGYIAISGIAYYS-----HNWRLLQWVITIPTIFFLTLWWIMPES 294 (565)
Q Consensus 221 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~-~~~~~lG~~~~~~l~~~~-----~~Wr~~~~~~~~~~~~~~~~~~~~pes 294 (565)
+.+...+...+++.|.+|++.|+...++. ..+..+|..++|.+...+ .+|+..+...++..++..+..+.++|+
T Consensus 356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 88888888899999999999998877774 444557777777766553 248888887777777776666666664
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.8e-08 Score=99.87 Aligned_cols=178 Identities=15% Similarity=0.127 Sum_probs=130.3
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHhhhhhhhccCcCCCcHHHHHHH---HHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Q psy17080 348 MDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIGGDVYLNTII---SGIVEFPAIVISIFILLKMGRRRPLCLTTL 424 (565)
Q Consensus 348 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~dr~grr~~l~~~~~ 424 (565)
...+|+|.++.+.+...+..++..+........+.+...+.....++ ..+-.++..+++|.++||++||++++.+-+
T Consensus 4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~ 83 (524)
T PF05977_consen 4 FAPLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQL 83 (524)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 34578999998888888777777666666655555555555444333 334455677889999999999999998887
Q ss_pred HHHHHHHHHhhc----CCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHH
Q psy17080 425 GAGLACLMTLGF----APGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHM 498 (565)
Q Consensus 425 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~ 498 (565)
+.++..+++..+ ..+.+..+++.++.+++.....|...+.+.|+.|++....+.++.++..++..++||.+ ..+
T Consensus 84 ~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv 163 (524)
T PF05977_consen 84 LRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV 163 (524)
T ss_pred HHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 766554443322 12346677777888888888899999999999999999999999999999999999988 344
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhhcc
Q psy17080 499 QSINIHFPMGLLGVVGVLGGLSVLLLP 525 (565)
Q Consensus 499 ~~~~~~~~~~~~~~~~~i~~~~~~~l~ 525 (565)
...|....|.+-++..++..++....+
T Consensus 164 a~~G~~~~f~inalsfl~~i~~l~~~~ 190 (524)
T PF05977_consen 164 AFFGAAAAFLINALSFLISILALLRWK 190 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 556777778777776666555444443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-07 Score=95.98 Aligned_cols=139 Identities=16% Similarity=0.095 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAEL 468 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 468 (565)
.....+..++..++.++.|++.||+|||+.+..+..+.+++.++.. +.++.+...+..++.+++.+...+....+..|.
T Consensus 44 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~ 122 (401)
T PRK11043 44 SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGML-WVESAAQLLVLRFVQAVGVCSAAVIWQALVIDR 122 (401)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3444455667778999999999999999999998888887777766 555555555556666676666666667888999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhcccCC
Q psy17080 469 FPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLLPDTT 528 (565)
Q Consensus 469 ~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~et~ 528 (565)
+|++.++...+..+....++..++|.+ ...+..++...+.+.+++.++..+..++++|.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (401)
T PRK11043 123 YPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSK 184 (401)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999988888888888888888899887 334556788888888877777666665565543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.3e-08 Score=96.49 Aligned_cols=139 Identities=12% Similarity=-0.046 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAEL 468 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 468 (565)
........++..++.+..|++.||+|||+++.........+..... ..++.....+.-++.+++.+. ........+|.
T Consensus 29 g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~ 106 (368)
T TIGR00903 29 GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLL-DPFNYEWLLACQLLAALGQPF-LLNAFAPAASQ 106 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHhHhHH-HHHHHHHHHHH
Confidence 3444455667778899999999999999876655444434332222 224445666666777777765 34555566899
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHH-HhhcccCCC
Q psy17080 469 FPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLS-VLLLPDTTG 529 (565)
Q Consensus 469 ~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~-~~~l~et~~ 529 (565)
+|++.|++++++.+....+|..++|.+ ...+..+|+..|.+.+++.++..++ .+++||+.+
T Consensus 107 ~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~ 170 (368)
T TIGR00903 107 IREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPF 170 (368)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999887 3345678888888888877666554 467787643
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-07 Score=95.14 Aligned_cols=140 Identities=13% Similarity=0.047 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAEL 468 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 468 (565)
........+...++.++.|+++||+|||+.+..+..+..++.+... +.++.+...+..++.+++.+...+....+..|.
T Consensus 46 ~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 124 (394)
T PRK11652 46 QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVAL-FAHSLTVLIAASAIQGLGTGVGGVMARTLPRDL 124 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3444556667778899999999999999999998888887777666 555556666666677777776667777788899
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHH-HHhhcccCCC
Q psy17080 469 FPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGL-SVLLLPDTTG 529 (565)
Q Consensus 469 ~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~-~~~~l~et~~ 529 (565)
++.+.++.+.++.++...++..++|.+ ...+..++...+.+.+++.++..+ ..+++||++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 125 YEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 998899999999988888899899887 333456788888887776655444 3456777644
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.1e-08 Score=100.94 Aligned_cols=139 Identities=13% Similarity=0.014 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCC----chHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAP----GSFITISLAMVGKFAISSSNVIIPIY 464 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (565)
........++..++.++.|++.||+|||+.+..+.++.+++.++.. ..+ +.+...+..++.+++.+..++.....
T Consensus 64 g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~ 142 (438)
T TIGR00712 64 GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMG-FVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRT 142 (438)
T ss_pred HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHh-ccccccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 3445566677788899999999999999999988888887777655 322 22333444556667777667777788
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHHH--HHH-HhhhhhHHHHHHHHHHHHHH-HHhhcccCC
Q psy17080 465 TAELFPTKMRNLGVGASSVPAGVALILIPYLW--HMQ-SINIHFPMGLLGVVGVLGGL-SVLLLPDTT 528 (565)
Q Consensus 465 ~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~--~~~-~~~~~~~~~~~~~~~~i~~~-~~~~l~et~ 528 (565)
+.|.+|++.|+++.|+.++...+|+.++|.+. ... ..+|+..|++.+++.++..+ ..+++||+.
T Consensus 143 i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 143 MVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP 210 (438)
T ss_pred HHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 88999999999999999999999998887662 222 35788888888887776554 445667653
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-08 Score=101.93 Aligned_cols=143 Identities=10% Similarity=-0.025 Sum_probs=120.9
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.+...+|.+. +..+.|++.+...++..++.++.|++.||+|+|+.+.++.++.++..++.+++++.+.+++.+++.|
T Consensus 228 ~~~~l~~~g~---s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g 304 (382)
T TIGR00902 228 SAIYWQAAGI---SASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHC 304 (382)
T ss_pred HHHHHHHCCC---CHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence 4555567888 7888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhh-hhhHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHH
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYL-FPVPVGYIAISGIAYYSH---NWRLLQWVITIPTIFFLTL 287 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~lG~~~~~~l~~~~~---~Wr~~~~~~~~~~~~~~~~ 287 (565)
++.+...+....++.+. |+++|++..++++ ....+|..+++.+++.+. ++ ..|++.++.+++.+++
T Consensus 305 ~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 305 GTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 99999999999999998 9999999888876 567788888888877763 33 4455555555544433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.8e-08 Score=99.91 Aligned_cols=130 Identities=14% Similarity=0.101 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy17080 392 TIISGIVEFPAIVISIFILLKM-GRRRPLCLTTLGAGLACLMTLGFAPG-SFITISLAMVGKFAISSSNVIIPIYTAELF 469 (565)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~dr~-grr~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 469 (565)
.....+...++.+++|+++||+ |||+.+.++.++.+++.+++. .... .....+...+..++.+...+...++.+|.+
T Consensus 51 ~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~-~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elf 129 (493)
T PRK15462 51 FSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLG-ASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELY 129 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH-HhhcchhHHHHHHHHHHHhcccccccHHHHHHHHC
Confidence 3444456677889999999999 999999999998888876655 3221 122222233334555555566778899999
Q ss_pred chh--hhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHh
Q psy17080 470 PTK--MRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVL 522 (565)
Q Consensus 470 p~~--~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~ 522 (565)
|++ .|.++.++..+..++|+.++|.+ ...+..++...|.+.++..+++.+.++
T Consensus 130 p~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~ 186 (493)
T PRK15462 130 EPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFL 186 (493)
T ss_pred CCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHH
Confidence 986 69999999999999999999999 334556888888887665555544443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.3e-08 Score=97.70 Aligned_cols=139 Identities=17% Similarity=0.180 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAEL 468 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 468 (565)
........++..++.++.|++.||+|||+.+..+.++.+++.++.. +.++.+...+..++.+++.+...+....+..|.
T Consensus 29 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 107 (377)
T PRK11102 29 QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACA-LAQTIDQLIYMRFLHGLAAAAASVVINALMRDM 107 (377)
T ss_pred HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556677788899999999999999999999988888888777 555556666667777888887778888999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHH-hhcccCC
Q psy17080 469 FPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSV-LLLPDTT 528 (565)
Q Consensus 469 ~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~-~~l~et~ 528 (565)
+|++.|+++.++.+....+|..++|.+ ...+..++...+.+.+++.++..++. +++||++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 108 FPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 999999999999999999999999988 33455677788888777776665543 5667654
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.4e-08 Score=95.31 Aligned_cols=170 Identities=15% Similarity=0.199 Sum_probs=124.2
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHhhhhhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Q psy17080 349 DLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLG 425 (565)
Q Consensus 349 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~ 425 (565)
.++.++.....++...++.+...++++.+..++++.+... +......-.++++..++.+++.+|+|+-+++.+++.+
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~ 445 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLAC 445 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhH
Confidence 4566665555555555555555555555555566655332 2334445567889999999999999999999999888
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHH-HH----HHHHHHHHHHHHHH
Q psy17080 426 AGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVP-AG----VALILIPYLWHMQS 500 (565)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~-~~----lg~~i~p~i~~~~~ 500 (565)
.++=++.+. ...+.|..+.+-++-++..+..+....+|++...|++.|.++.|+.... .. +|++++..+ ...
T Consensus 446 ~~~Rf~~~S-~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~--v~~ 522 (618)
T KOG3762|consen 446 NVGRFLYYS-YLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFV--VER 522 (618)
T ss_pred HHHHHHHHH-HhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhh--hee
Confidence 888888777 7788888888889999999999999999999999999999999987544 33 445554444 344
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q psy17080 501 INIHFPMGLLGVVGVLGGLSV 521 (565)
Q Consensus 501 ~~~~~~~~~~~~~~~i~~~~~ 521 (565)
.+....|.++++.+++..++.
T Consensus 523 fg~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 523 FGARTTFRIFGIACLVTLALF 543 (618)
T ss_pred ehhHHHHHHHHHHHHHHHHHH
Confidence 666677777777776655544
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.4e-07 Score=94.43 Aligned_cols=160 Identities=19% Similarity=0.166 Sum_probs=107.7
Q ss_pred HHHHhhhhhhhccCcCCCcHHHHHHHHHHHH-HHHHHHHHHHHhhc-----CChHH-HHHHHHHHHHHHHHHhhcCC--c
Q psy17080 369 SVYLVYYGLVLNLSNIGGDVYLNTIISGIVE-FPAIVISIFILLKM-----GRRRP-LCLTTLGAGLACLMTLGFAP--G 439 (565)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~dr~-----grr~~-l~~~~~~~~~~~~~~~~~~~--~ 439 (565)
.........+.+....+.+.........+.. .++.++.+.++||+ |||+. +..+.+..+++...+....+ +
T Consensus 27 ~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~ 106 (491)
T PRK11010 27 PLALTSGTLQAWMTVENIDLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQ 106 (491)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 3333333445555555555433333322222 25789999999999 98885 55666666666555542323 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHH-HhhhhhHHHHHHHHHHH
Q psy17080 440 SFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQ-SINIHFPMGLLGVVGVL 516 (565)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~-~~~~~~~~~~~~~~~~i 516 (565)
.+...+..++.+++.+...+...++..|.+|++.|+.+.++..+...+|.++++.+ ...+ ..+|...|++.+++.++
T Consensus 107 l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll 186 (491)
T PRK11010 107 LRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIP 186 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence 23444455566666676777788999999999999999999999999999998877 2233 24888999998888777
Q ss_pred HHHHHhhcccCC
Q psy17080 517 GGLSVLLLPDTT 528 (565)
Q Consensus 517 ~~~~~~~l~et~ 528 (565)
..+..+++||+.
T Consensus 187 ~~l~~~~~~e~~ 198 (491)
T PRK11010 187 CIIATLLAPEPT 198 (491)
T ss_pred HHHHHHhcCCCc
Confidence 766666677754
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-07 Score=100.67 Aligned_cols=138 Identities=17% Similarity=0.097 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy17080 390 LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELF 469 (565)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 469 (565)
+...+..++.++|.++.|.++||+|||+++.++.++..++.++.+ +.++.+...++-++.|++.+....+.+.+..|.+
T Consensus 122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a-~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~ 200 (521)
T KOG0255|consen 122 LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTA-FAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIV 200 (521)
T ss_pred HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHhhccchhHHhHhhheeec
Confidence 445566677889999999999999999999999999999998777 8888889999999999999999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhcccCCC
Q psy17080 470 PTKMRNLGVGASSVPAGVALILIPYLWHMQSINIHFPMGLLGVVGVLGGLSVLLLPDTTG 529 (565)
Q Consensus 470 p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~et~~ 529 (565)
+++.|+.+..+ ......++.++|.+...-..+|+..+++..+..++..++.++.||+++
T Consensus 201 ~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~r 259 (521)
T KOG0255|consen 201 SPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPR 259 (521)
T ss_pred CcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChH
Confidence 99999999999 777777777777663333337888888888877777666666668876
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.3e-07 Score=93.72 Aligned_cols=154 Identities=8% Similarity=-0.083 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Q psy17080 357 RLISFVQYIIWFSVYLVYYGLVLNLSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMT 433 (565)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~ 433 (565)
....+..++........+.......++.+.+ ........++...++.++.|.+.||+|||+.+..+..+.+++.++.
T Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~ 95 (402)
T TIGR00897 16 LWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAF 95 (402)
T ss_pred hHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 3334443333333333333333333444443 3455566777888999999999999999999999888887776543
Q ss_pred hh--c-CCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHH-HHHHHHH--HHHHhhhhhHH
Q psy17080 434 LG--F-APGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVAL-ILIPYLW--HMQSINIHFPM 507 (565)
Q Consensus 434 ~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~-~i~p~i~--~~~~~~~~~~~ 507 (565)
.. . .++.+...+..++.+++.+...+.......+.+|++.|+++.|+.++...+|. .++|.+. ..+..++...+
T Consensus 96 ~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~ 175 (402)
T TIGR00897 96 IVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTL 175 (402)
T ss_pred HHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHH
Confidence 21 2 22334444455556666666666667778889999999999999999988886 5778762 23344543333
Q ss_pred HHH
Q psy17080 508 GLL 510 (565)
Q Consensus 508 ~~~ 510 (565)
+..
T Consensus 176 ~~~ 178 (402)
T TIGR00897 176 WSA 178 (402)
T ss_pred HHH
Confidence 333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.8e-07 Score=96.63 Aligned_cols=171 Identities=9% Similarity=0.044 Sum_probs=105.7
Q ss_pred hhccccHH-HHHHHHHHHHHHHHHHHhhhhhhhc-cCcCCCcHHHHHH---HHHHHHHHHHHHHHHHHhh-cCChHHHHH
Q psy17080 348 MDLWRTPL-IRLISFVQYIIWFSVYLVYYGLVLN-LSNIGGDVYLNTI---ISGIVEFPAIVISIFILLK-MGRRRPLCL 421 (565)
Q Consensus 348 ~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~dr-~grr~~l~~ 421 (565)
.+.+++|+ ++......++..+..+........+ .+.++.+...... ..........+++|++.|| +|||+.+.+
T Consensus 14 ~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~ 93 (500)
T PRK09584 14 LNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIML 93 (500)
T ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 34556664 4444444443333333222222222 2444544322221 2222223334688999999 599999999
Q ss_pred HHHHHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHHHhcccccchhh--hhhHHHHHHHHHHHHHHHHHHH--H
Q psy17080 422 TTLGAGLACLMTLGFAPG-SFITISLAMVGKFAISSSNVIIPIYTAELFPTKM--RNLGVGASSVPAGVALILIPYL--W 496 (565)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~lg~~i~p~i--~ 496 (565)
+.++.+++.+++. +..+ .+...+...+.+++.+...+...++..|.+|++. |..+.++.++..++|.+++|.+ .
T Consensus 94 g~~~~~ig~~l~~-~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~ 172 (500)
T PRK09584 94 GAIVLAIGYALVA-WSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPW 172 (500)
T ss_pred HHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 9988888877766 4333 2333344455667777667777788999998643 4567888889999999999988 3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH
Q psy17080 497 HMQSINIHFPMGLLGVVGVLGGL 519 (565)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~i~~~ 519 (565)
..+..+++..|.+.++..+++.+
T Consensus 173 l~~~~g~~~~F~i~~i~~~i~~i 195 (500)
T PRK09584 173 LAAKYGWSVAFALSVVGMLITVV 195 (500)
T ss_pred HHHhhCHHHHHHHHHHHHHHHHH
Confidence 44567888888887765555443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.7e-07 Score=98.01 Aligned_cols=135 Identities=12% Similarity=0.059 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17080 390 LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF-APGSFITISLAMVGKFAISSSNVIIPIYTAEL 468 (565)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 468 (565)
.......++.+++.++.|++.||+|||+.+..+.++.+++.++.... ..+.+..++.-++.+++.+..++....++.|.
T Consensus 80 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~ 159 (465)
T TIGR00894 80 LILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKW 159 (465)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhc
Confidence 34445567788899999999999999999999888877776665311 22234555666777888888889999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHH-hhhhhHHHHHHHHHHHHHHHHhhc
Q psy17080 469 FPTKMRNLGVGASSVPAGVALILIPYL--WHMQS-INIHFPMGLLGVVGVLGGLSVLLL 524 (565)
Q Consensus 469 ~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~-~~~~~~~~~~~~~~~i~~~~~~~l 524 (565)
+|++.|+++.|+.+....+|.+++|.+ ...+. .++..+|.+.+++.++..++++.+
T Consensus 160 ~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 160 APPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999988 33344 378888998888877766655443
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.6e-08 Score=94.65 Aligned_cols=140 Identities=14% Similarity=0.114 Sum_probs=122.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17080 387 DVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTA 466 (565)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (565)
...+.+...++.+++..++.|.+.||+|+|..++++++++....++++ +..+.+..++.-.+-+++.........++.+
T Consensus 107 ~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFa-fg~sy~~l~vAR~LQgvgsA~~~tsglamlA 185 (464)
T KOG3764|consen 107 QIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFA-FGNSYPMLFVARSLQGVGSAFADTSGLAMLA 185 (464)
T ss_pred chhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHH-HcchhHHHHHHHHHhhhhHHHHHhhhHHHHH
Confidence 346667777889999999999999999999999999999999999988 6666677777778888999888889999999
Q ss_pred cccchhh-hhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhcccC
Q psy17080 467 ELFPTKM-RNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLLPDT 527 (565)
Q Consensus 467 e~~p~~~-r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~et 527 (565)
+.+|.+. |++++|+.-.+..+|-.++|.+ ..++..|+..||++.++++++...+-+++-|.
T Consensus 186 d~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 186 DVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred HHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCc
Confidence 9999877 7999999999999999999988 56788899999999999999988877665443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-06 Score=89.38 Aligned_cols=104 Identities=17% Similarity=0.155 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcC-----CchHHHHHHHHHHHHHHHHHHHHHHH
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFA-----PGSFITISLAMVGKFAISSSNVIIPI 463 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (565)
.....+..+...+..+..|++.||+|.|+++.++.++.++..+... +. ++.+...+..++.+++ +..++....
T Consensus 73 g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~-~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~ 150 (462)
T PRK15034 73 FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLG-IAVQNPNTPFGIFIVIALLCGFA-GANFASSMG 150 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH-HHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHH
Confidence 3444455566667778889999999999999999988888877776 32 4446666667777776 667888889
Q ss_pred hcccccchhhhhhHHHHHHHHHHHHHHHHHH
Q psy17080 464 YTAELFPTKMRNLGVGASSVPAGVALILIPY 494 (565)
Q Consensus 464 ~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~ 494 (565)
.+++.+|++.||++.|+....+.+|..++++
T Consensus 151 ~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~ 181 (462)
T PRK15034 151 NISFFFPKAKQGSALGINGGLGNLGVSVMQL 181 (462)
T ss_pred HHHHHCCHhHhHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999996556566554433
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.8e-08 Score=90.20 Aligned_cols=161 Identities=17% Similarity=0.147 Sum_probs=124.2
Q ss_pred CCCeEeCCCCcccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhc---
Q psy17080 129 CLQWTYDSSSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAIS--- 205 (565)
Q Consensus 129 C~~~~y~~~~~~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~--- 205 (565)
|.+=.|..+.|.|.+.+.+++ ++.+...+.++-.+|..+| ++.|.+.|++|.|.+++++.+...++..+...+
T Consensus 14 ~~Gt~Y~Fs~yS~~Lk~~l~~---sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~ 89 (250)
T PF06813_consen 14 CSGTTYTFSAYSPQLKSRLGY---SQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG 89 (250)
T ss_pred hcCcccchhhhhHHHHHHhCC---CHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444457777889999999999 9999999999999999875 888999999999999999999999998877653
Q ss_pred ----chhHHHHHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh-c-c-hhHHHHHHH
Q psy17080 206 ----PWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS-H-N-WRLLQWVIT 278 (565)
Q Consensus 206 ----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-~-~-Wr~~~~~~~ 278 (565)
.++|.+.+..++.|.+.+.....+.....+.+| ++||.+.++.-...+++..+...+...+ . + -+..+....
T Consensus 90 ~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~ 168 (250)
T PF06813_consen 90 RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAV 168 (250)
T ss_pred ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 467888888888888877777777777778886 6899999999999999888766554443 2 2 233333444
Q ss_pred HHHHHHHHHhhhcccc
Q psy17080 279 IPTIFFLTLWWIMPES 294 (565)
Q Consensus 279 ~~~~~~~~~~~~~pes 294 (565)
.+.++.++..++++..
T Consensus 169 ~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 169 LPAVVCLVAMFFVRPV 184 (250)
T ss_pred HHHHHHHHHhhheecc
Confidence 4455555555555443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.2e-07 Score=108.21 Aligned_cols=180 Identities=14% Similarity=0.040 Sum_probs=114.4
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHhhhhh----hhccC-cCCCc----HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHH
Q psy17080 349 DLWRTPLIRLISFVQYIIWFSVYLVYYGL----VLNLS-NIGGD----VYLNTIISGIVEFPAIVISIFILLKMGRRRPL 419 (565)
Q Consensus 349 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l 419 (565)
.+++++.++.+++..++..+...+....+ .+... ..+.+ ..+...+..+..++..+++|+++||+|||+++
T Consensus 6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~ 85 (1140)
T PRK06814 6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA 85 (1140)
T ss_pred hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence 45677777766666555544433322211 11111 11111 22333345566677889999999999999975
Q ss_pred HHHHHH--HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--
Q psy17080 420 CLTTLG--AGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL-- 495 (565)
Q Consensus 420 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i-- 495 (565)
.....+ ......++.....+.+.++++.++.+++.+...+...+++.+++|++.|+.++|+.++...+|.+++|.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g 165 (1140)
T PRK06814 86 KILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGG 165 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 432222 1112222221234557777778888888888889999999999999999999999999999999999998
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhhcccCC
Q psy17080 496 WHMQSINIHFPMGLLGVVGVLGGLSVLLLPDTT 528 (565)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~et~ 528 (565)
......++...|+..+++.+++.++.+++|+++
T Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 166 LATISGNFVILVALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 334555666556444444455555556677654
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.4e-07 Score=90.89 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCC-chHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAP-GSFITISLAMVGKFAISSSNVIIPIYTAE 467 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 467 (565)
.+......++..++.++.|++.||+|||+.+.++.++.+++.++.. +.+ +.+...+..++.+++.+ .++....++.|
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~ 117 (366)
T TIGR00886 40 GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAG-LAVQSYSVLLLLRLFIGIAGG-SFASCMPWISF 117 (366)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHH
Confidence 3444556677788999999999999999999999999888887776 555 55555555566666543 34566788999
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 468 LFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 468 ~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
.+|++.|+.+.++......+|..+++.+
T Consensus 118 ~~~~~~r~~~~~~~~~~~~~g~~~~~~i 145 (366)
T TIGR00886 118 FFPKKIQGTALGLAAGWGNMGGGVAQFV 145 (366)
T ss_pred hcCHhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999887777776666555
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1e-07 Score=97.08 Aligned_cols=151 Identities=13% Similarity=-0.027 Sum_probs=112.1
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISP-WFELYLVVRFFL 218 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~ 218 (565)
.|.+.+++++ +..+.+...+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+ +...+ .-++.
T Consensus 228 lp~~l~~~g~---s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~ 302 (393)
T PRK09705 228 LPAFYIEIGA---SAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVC 302 (393)
T ss_pred HHHHHHHcCC---ChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHH
Confidence 5666667787 777889999999999999999999999999999999988887777766554333 32222 23567
Q ss_pred hhhhhhhHhhhhhhhccccc-cchhHHHHHHhhhhhHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHHH-hhhcc
Q psy17080 219 GFFCVSIVFSGFVLCMELVG-GKWLTIMGVMYLFPVPVGYIAISGIAYYS----HNWRLLQWVITIPTIFFLTL-WWIMP 292 (565)
Q Consensus 219 G~~~~~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~~Wr~~~~~~~~~~~~~~~~-~~~~p 292 (565)
|++.+...+.......+..+ +++|++..++.+....++..++|.+...+ .+|...+++..+.+++.... ..+.|
T Consensus 303 g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 303 GLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred HHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888888877777777775 57889999988888888877787776654 34677777766665554444 55667
Q ss_pred cch
Q psy17080 293 ESP 295 (565)
Q Consensus 293 esp 295 (565)
|++
T Consensus 383 ~~~ 385 (393)
T PRK09705 383 ARF 385 (393)
T ss_pred ccc
Confidence 764
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-06 Score=89.63 Aligned_cols=133 Identities=9% Similarity=-0.007 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhc--CCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF--APGSFITISLAMVGKFAISSSNVIIPIYTA 466 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (565)
........++.+++.+..+++.||+|||+.+..+.++.+++.++.... .++.+...+..++.+++.+...+....++.
T Consensus 41 g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~ 120 (410)
T TIGR00885 41 ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYIL 120 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHH
Confidence 445556667788899999999999999999999999988887775411 233455666677888888888888888999
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHH-H---------------------------HHhhhhhHHHHHHHHHHHHH
Q psy17080 467 ELFPTKMRNLGVGASSVPAGVALILIPYLWH-M---------------------------QSINIHFPMGLLGVVGVLGG 518 (565)
Q Consensus 467 e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~-~---------------------------~~~~~~~~~~~~~~~~~i~~ 518 (565)
+..|++.|++..++.+....+|..++|.+.. + +..+++.+|.+.+++.++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~ 200 (410)
T TIGR00885 121 VMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA 200 (410)
T ss_pred HHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988721 1 11346778888877666654
Q ss_pred HHH
Q psy17080 519 LSV 521 (565)
Q Consensus 519 ~~~ 521 (565)
++.
T Consensus 201 ~~~ 203 (410)
T TIGR00885 201 LLI 203 (410)
T ss_pred HHH
Confidence 444
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.8e-07 Score=96.46 Aligned_cols=147 Identities=14% Similarity=0.114 Sum_probs=123.8
Q ss_pred eccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccch--hhHHHHHHHHHHHHHHHHh--------cchhHHHHHH
Q psy17080 145 SEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRK--KALMGSLVFQLVLGVLVAI--------SPWFELYLVV 214 (565)
Q Consensus 145 ~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr--~~l~~~~~l~~~~~~~~~~--------~~~~~~l~~~ 214 (565)
+++++ +..+...+.-+..+..++|++++|++.||+|.| ++++.+++++.+..+...+ .++.+.+.+.
T Consensus 310 ~~lg~---s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~ 386 (477)
T PF11700_consen 310 EVLGM---STTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVL 386 (477)
T ss_pred HhcCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHH
Confidence 47888 777777778888889999999999999999999 8999988888766666555 6788889999
Q ss_pred HHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHHHhhh
Q psy17080 215 RFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS----HNWRLLQWVITIPTIFFLTLWWI 290 (565)
Q Consensus 215 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~~Wr~~~~~~~~~~~~~~~~~~~ 290 (565)
-++.|++.|+..+...++.+|..|+++.+...+++.+..-....++|.+...+ .+-|+.++...++.++.+++.++
T Consensus 387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988888888888766554 45788888777777777777776
Q ss_pred cccc
Q psy17080 291 MPES 294 (565)
Q Consensus 291 ~pes 294 (565)
+++.
T Consensus 467 v~~~ 470 (477)
T PF11700_consen 467 VDVE 470 (477)
T ss_pred ccch
Confidence 6653
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.6e-07 Score=92.76 Aligned_cols=137 Identities=20% Similarity=0.156 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhh--cCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy17080 393 IISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLG--FAPGSFITISLAMVGKFAISSSNVIIPIYTAELFP 470 (565)
Q Consensus 393 ~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 470 (565)
.+..++.++|.+++++++||+|||..+.+..++..++.++... ..+.....++.-++.|...+........|..|..|
T Consensus 67 s~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP 146 (485)
T KOG0569|consen 67 SIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISP 146 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCh
Confidence 3455778899999999999999999888887777666555542 23444667777788888889989999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH---HHH-hhhhhHHHHHHHHHHHHHHHHhhcccCCC
Q psy17080 471 TKMRNLGVGASSVPAGVALILIPYLWH---MQS-INIHFPMGLLGVVGVLGGLSVLLLPDTTG 529 (565)
Q Consensus 471 ~~~r~~~~g~~~~~~~lg~~i~p~i~~---~~~-~~~~~~~~~~~~~~~i~~~~~~~l~et~~ 529 (565)
++.||....+..+...+|..++..+.. +.+ ..|...+.+..+.+++..+...++||+.+
T Consensus 147 ~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk 209 (485)
T KOG0569|consen 147 KNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPK 209 (485)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 999999998888888888888865522 222 23445555566666777777789999877
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.71 E-value=5e-08 Score=99.26 Aligned_cols=140 Identities=19% Similarity=0.132 Sum_probs=103.6
Q ss_pred cccee-eccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHH--HHHHh--cchhHHHHHH
Q psy17080 140 GHTII-SEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLG--VLVAI--SPWFELYLVV 214 (565)
Q Consensus 140 ~~~i~-~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~--~~~~~--~~~~~~l~~~ 214 (565)
.+.+. +++++ +..+.+...+...++..++.++.|+++||+|||+.+.....+..+.. +...+ .++.+.+++.
T Consensus 242 ~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (394)
T TIGR00883 242 LPTYLTQTLGL---SANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFL 318 (394)
T ss_pred HHHHHHHhcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34443 55676 66778888999999999999999999999999998776555444333 22222 2567777788
Q ss_pred HHHHhhhhhhhHhhhhhhhccccccchhHHHHHH-hhhhhHHHHHHHHHHHHHh----cchhHHHHHHHHHHH
Q psy17080 215 RFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVM-YLFPVPVGYIAISGIAYYS----HNWRLLQWVITIPTI 282 (565)
Q Consensus 215 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~lG~~~~~~l~~~~----~~Wr~~~~~~~~~~~ 282 (565)
.++.|++.+...+...+++.|.+|+++|+++.++ .+.+..+|..++|.++..+ .+|+..++...+..+
T Consensus 319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 319 VLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 8999999989999999999999999999988877 4455667777777766553 238777666555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-08 Score=100.47 Aligned_cols=140 Identities=18% Similarity=0.110 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAEL 468 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 468 (565)
.+......++..+++++.|++.||+.|++++.++..+..++.++.. +....|.+.++-.+.|+|.....++..+++++.
T Consensus 71 Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~-fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~ 149 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASG-FSNHFWQVLLCRGFVGIGEASYSPIAPSLIADS 149 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccchhhhcccchhHhhhc
Confidence 3555566677888999999999999999999999999999988887 555558888888889999999999999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHH--HHH-HhhhhhHHHHHHHHHHHHHHHH-hhcccCCC
Q psy17080 469 FPTKMRNLGVGASSVPAGVALILIPYLW--HMQ-SINIHFPMGLLGVVGVLGGLSV-LLLPDTTG 529 (565)
Q Consensus 469 ~p~~~r~~~~g~~~~~~~lg~~i~p~i~--~~~-~~~~~~~~~~~~~~~~i~~~~~-~~l~et~~ 529 (565)
+|...|++++++.++...+|+.++-... ... ...|++.|.+.+++.++.+++. ++++|.++
T Consensus 150 f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 150 FPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred CcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 9999999999999999888877664441 111 2348888999999998877765 56666654
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.4e-07 Score=106.89 Aligned_cols=106 Identities=10% Similarity=-0.048 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhh--cCCchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17080 390 LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLG--FAPGSFITISLAMVGKFAISSSNVIIPIYTAE 467 (565)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 467 (565)
+...+..+..+++.++.|+++||+|||+++.++.++.++..++... ...+.+.+++..++.+++.+...+...+++.|
T Consensus 51 ~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 130 (1146)
T PRK08633 51 IVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPE 130 (1146)
T ss_pred HHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHH
Confidence 3344555667788899999999999999998887665544443321 22344566666777788888888889999999
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 468 LFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 468 ~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
.+|++.|+.++|+..+...+|.+++|.+
T Consensus 131 ~~~~~~r~~~~~~~~~~~~ig~~lg~~l 158 (1146)
T PRK08633 131 LVGKENLSRANGLLEAFTIVAILAGTAL 158 (1146)
T ss_pred hcCcccchhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.6e-07 Score=93.68 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchH--------HHHHHHHHHHHHHHHHHHHHHHhcccccch
Q psy17080 400 FPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSF--------ITISLAMVGKFAISSSNVIIPIYTAELFPT 471 (565)
Q Consensus 400 ~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 471 (565)
.++.++.|++.||+|||+.+..+.++.+++.++.. +.++.+ ..++.-++.+++.+...+....+..|.+|+
T Consensus 70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~ 148 (434)
T PRK15075 70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIA-FVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP 148 (434)
T ss_pred hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc
Confidence 46788899999999999999999999888888877 555543 234445566777777777788999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH----------HHHhhhhhHHHHHH
Q psy17080 472 KMRNLGVGASSVPAGVALILIPYLWH----------MQSINIHFPMGLLG 511 (565)
Q Consensus 472 ~~r~~~~g~~~~~~~lg~~i~p~i~~----------~~~~~~~~~~~~~~ 511 (565)
+.|+++.++.+....+|..++|.+.. ....+|+.+|++..
T Consensus 149 ~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~ 198 (434)
T PRK15075 149 GRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGC 198 (434)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence 99999999988887777766665511 13457777776543
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-06 Score=92.22 Aligned_cols=123 Identities=13% Similarity=0.020 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcC-----CchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhh
Q psy17080 402 AIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFA-----PGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNL 476 (565)
Q Consensus 402 ~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 476 (565)
..++.|++.||+|+|+++.++.++.+++.++.+... ++.+.+.+..++.+++.+..++.....+.+.+| +.||.
T Consensus 77 ~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~ 155 (591)
T PTZ00207 77 FLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGA 155 (591)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHH
Confidence 445789999999999999999999999988877321 234555666667777777777777778888897 67999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-hhcc
Q psy17080 477 GVGASSVPAGVALIL-IPYLWHMQSINIHFPMGLLGVVGVLGGLSV-LLLP 525 (565)
Q Consensus 477 ~~g~~~~~~~lg~~i-~p~i~~~~~~~~~~~~~~~~~~~~i~~~~~-~~l~ 525 (565)
+.|+......+|+++ +|+...+...++...+++.+++.++..++. .+++
T Consensus 156 a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 156 VVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhee
Confidence 999999999999975 444433323345566667776666655544 3443
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.9e-07 Score=97.15 Aligned_cols=140 Identities=19% Similarity=0.283 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAEL 468 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 468 (565)
.+......++..++.++.++++|++|||+.+..+.++..++.++.. +.++.....+.-++.|++.+....+...|.+|.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~-~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEi 170 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIA-LAPSWYQLIVGRILTGLGVGGASVLAPVYISEI 170 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHhccchhhhhhcchhhHhhc
Confidence 4566677788899999999999999999999999999999999888 777778888888999999999999999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHH-HH--hhhhhHHHHHHHHHHHHHHHHhhcccCCC
Q psy17080 469 FPTKMRNLGVGASSVPAGVALILIPYLWHM-QS--INIHFPMGLLGVVGVLGGLSVLLLPDTTG 529 (565)
Q Consensus 469 ~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~-~~--~~~~~~~~~~~~~~~i~~~~~~~l~et~~ 529 (565)
.|++.||...+..+....+|..++-.+... .+ .+|+.++.+..+.+++..+..+++||+.+
T Consensus 171 ap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~ 234 (513)
T KOG0254|consen 171 APAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPR 234 (513)
T ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 999999999999988888888777444222 22 36777888887777777777788898866
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.6e-05 Score=76.77 Aligned_cols=248 Identities=11% Similarity=0.062 Sum_probs=145.1
Q ss_pred chhhHHHHHHHHHHHhhh-hhhhhcccccccchhhHHHHHHHHHHHHHHHHhc----c----------------------
Q psy17080 154 SSLESLAEMVFLLGVAFG-GFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAIS----P---------------------- 206 (565)
Q Consensus 154 ~~~~~l~~s~~~lg~~ig-~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~----~---------------------- 206 (565)
...+.++-+...+..++. .++.+++++|++|++++-.....+.+..++.++. +
T Consensus 42 ae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~ 121 (472)
T TIGR00769 42 AEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMG 121 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHH
Confidence 356778888777766666 8899999999999999888777776666665554 1
Q ss_pred -----hhHHHHHHHHHHhhhhhhhHh-hhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhc-----------c
Q psy17080 207 -----WFELYLVVRFFLGFFCVSIVF-SGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSH-----------N 269 (565)
Q Consensus 207 -----~~~~l~~~r~l~G~~~~~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~-----------~ 269 (565)
+.|...+.-....+-...... .-..+++|.+..++-.|..++..++.++|.++++.+...+. .
T Consensus 122 ~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~ 201 (472)
T TIGR00769 122 FIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDG 201 (472)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCh
Confidence 122233333444444344443 56788999999999999999999999999999997766542 3
Q ss_pred hh----HHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCccc
Q psy17080 270 WR----LLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKV 345 (565)
Q Consensus 270 Wr----~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (565)
|. ..+.+.++..++...+.+.+.+.. ..+.+. .+.+ +..++++.+..-..
T Consensus 202 ~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~---~~~~~~-----------------~~~~------~~~~k~k~k~~~~e 255 (472)
T TIGR00769 202 WHVSLKNLMVIVICSGLAIILLYWWVNRNV---LTDPRS-----------------YNPA------LKEKKVKPKMSTME 255 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCccc-----------------cchh------hccccCCCCCCHHH
Confidence 42 222333333333333333221100 000000 0000 00011111112235
Q ss_pred chhhccccHHHHHHHHHHHHHHHHHHHhhhhhhhccCcCCCcH-------HHHHHHHHHHHHHHHHHHHHHHhhcCChHH
Q psy17080 346 QVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIGGDV-------YLNTIISGIVEFPAIVISIFILLKMGRRRP 418 (565)
Q Consensus 346 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~dr~grr~~ 418 (565)
+++.++|+|.++...+...+...+..+.++...-.......+. .......++..++..++.+.+.+|+|-+..
T Consensus 256 s~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~ 335 (472)
T TIGR00769 256 SLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTA 335 (472)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 6778899999888777777776777776654332222221111 122334455555666677899999998766
Q ss_pred HHHHHHHHH
Q psy17080 419 LCLTTLGAG 427 (565)
Q Consensus 419 l~~~~~~~~ 427 (565)
..+.-++..
T Consensus 336 a~i~Pii~l 344 (472)
T TIGR00769 336 ALITPLVML 344 (472)
T ss_pred HHHHHHHHH
Confidence 655444433
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.5e-07 Score=94.00 Aligned_cols=129 Identities=10% Similarity=0.034 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHhhcCCch-HHHHHHHHHHHHHHHHHHHHHHHhcccccchhh
Q psy17080 396 GIVEFPAIVISIFILLK-MGRRRPLCLTTLGAGLACLMTLGFAPGS-FITISLAMVGKFAISSSNVIIPIYTAELFPTKM 473 (565)
Q Consensus 396 ~~~~~~~~~~~~~l~dr-~grr~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 473 (565)
.+......+++|+++|| +|||+++.++.++.+++.+... +..+. ....+...+.+++.+...+...+++.|.+|++.
T Consensus 60 ~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~-~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~ 138 (489)
T PRK10207 60 AALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTG-MSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKD 138 (489)
T ss_pred HHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHH-HhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCc
Confidence 33444556789999999 9999999999999999888777 44332 223344555667777777888899999998874
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhcc
Q psy17080 474 --RNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLLP 525 (565)
Q Consensus 474 --r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 525 (565)
|+.++++..+..++|.+++|.+ ...+..+|+..|.+.++..+++.+.+...+
T Consensus 139 ~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~ 194 (489)
T PRK10207 139 PRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACR 194 (489)
T ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcc
Confidence 5778888888899999888877 344556788888776554444444444433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.8e-07 Score=92.62 Aligned_cols=139 Identities=9% Similarity=0.024 Sum_probs=110.2
Q ss_pred cceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhh
Q psy17080 141 HTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGF 220 (565)
Q Consensus 141 ~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~ 220 (565)
+...+|.++ +....|...+...++..++.++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|+
T Consensus 229 ~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 305 (382)
T PRK11128 229 AIYWQAAGY---SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCG 305 (382)
T ss_pred HHHHHHCCC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344456777 66778999999999999999999999999999999999999999888888889999999999999999
Q ss_pred hhhhhHhhhhhhhccccccchhHHHHHHhh-hhhHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHH
Q psy17080 221 FCVSIVFSGFVLCMELVGGKWLTIMGVMYL-FPVPVGYIAISGIAYYSH---NWRLLQWVITIPTIFF 284 (565)
Q Consensus 221 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~lG~~~~~~l~~~~~---~Wr~~~~~~~~~~~~~ 284 (565)
+.+...+....++.+. +++++++..+... ....+|..+++.+++.+. ++ ..++..++.+++.
T Consensus 306 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T PRK11128 306 TFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 9998888888888886 5666788877775 555667777777776653 44 3455555544443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.3e-07 Score=92.36 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=95.2
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHhhhhhhhHhhhhhh
Q psy17080 154 SSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAIS-PWFELYLVVRFFLGFFCVSIVFSGFVL 232 (565)
Q Consensus 154 ~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~ 232 (565)
....++..+...++.+++.+++|+++||+|||+++..+.++.+++.++..+. ++.+.+++..++.|++.+...+...++
T Consensus 256 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 335 (437)
T TIGR00792 256 PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWAL 335 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888899999999999999999999999999998888887777665 466777788899999999999999999
Q ss_pred hccccc-------cchhHHHHHHhhhhhHHHHHHHHHHHHHh
Q psy17080 233 CMELVG-------GKWLTIMGVMYLFPVPVGYIAISGIAYYS 267 (565)
Q Consensus 233 i~e~~~-------~~~r~~~~~~~~~~~~lG~~~~~~l~~~~ 267 (565)
++|..+ ++++|...++.+....+|..+++.+...+
T Consensus 336 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 336 VADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988865 45678999999888888888887766543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.3e-06 Score=84.87 Aligned_cols=125 Identities=16% Similarity=0.111 Sum_probs=87.9
Q ss_pred HHHHHHHHhhc-----CChHHH-HHHHHHHHHHHHHHhhcCCc-h--HHHHHHHHHHHHHHHHHHHHHHHhcccccchhh
Q psy17080 403 IVISIFILLKM-----GRRRPL-CLTTLGAGLACLMTLGFAPG-S--FITISLAMVGKFAISSSNVIIPIYTAELFPTKM 473 (565)
Q Consensus 403 ~~~~~~l~dr~-----grr~~l-~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 473 (565)
.++.|.++||+ |||+.+ ..+.++.+++...+. +.+. . +......++.++..+...+...+++.|.+|++.
T Consensus 38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 116 (356)
T TIGR00901 38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILS-FLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE 116 (356)
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHH-cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh
Confidence 78899999997 888864 556666666655555 3322 2 333334444555556666777889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH--HHHHhh--------hhhHHHHHHHHHHHHHHHHh-hcccCC
Q psy17080 474 RNLGVGASSVPAGVALILIPYLW--HMQSIN--------IHFPMGLLGVVGVLGGLSVL-LLPDTT 528 (565)
Q Consensus 474 r~~~~g~~~~~~~lg~~i~p~i~--~~~~~~--------~~~~~~~~~~~~~i~~~~~~-~l~et~ 528 (565)
|+.+.|+......+|.+++|.+. .....+ +..+|++.+++.+++.+..+ ..||.+
T Consensus 117 r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 117 LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999988873 234445 77888888887777655544 356643
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.1e-06 Score=84.73 Aligned_cols=115 Identities=6% Similarity=-0.065 Sum_probs=90.1
Q ss_pred cCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHh--hcCCchHHHHHHHHHHHHHHH
Q psy17080 381 LSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTL--GFAPGSFITISLAMVGKFAIS 455 (565)
Q Consensus 381 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 455 (565)
.+.++.+ ..+......++..++.++.+.+.||+|||+++..+..+.+++.++.. ...++.+...+..++.+++.+
T Consensus 53 ~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g 132 (438)
T PRK10133 53 QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLG 132 (438)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4444444 34455566777888999999999999999999999999988887642 134555666677788889999
Q ss_pred HHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 456 SSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 456 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
...+....++.+..|.+.|....++.+....+|..++|.+
T Consensus 133 ~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~ 172 (438)
T PRK10133 133 CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVF 172 (438)
T ss_pred HHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888777777777888888888999998877
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.9e-07 Score=89.80 Aligned_cols=146 Identities=15% Similarity=0.075 Sum_probs=125.9
Q ss_pred ccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhh
Q psy17080 146 EWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSI 225 (565)
Q Consensus 146 ~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 225 (565)
++|+ ++.+..++.....+..++|+++.|+|.||+|-|+++..++++..+.++..-+...-..+.+.-.+.|+..|+.
T Consensus 282 ~~gl---s~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~ 358 (438)
T COG2270 282 DLGL---SSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGA 358 (438)
T ss_pred HcCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchH
Confidence 7899 8888888888899999999999999999999999999999999999888888777777778889999999999
Q ss_pred HhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHHHhhhcccc
Q psy17080 226 VFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS----HNWRLLQWVITIPTIFFLTLWWIMPES 294 (565)
Q Consensus 226 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~~Wr~~~~~~~~~~~~~~~~~~~~pes 294 (565)
...+.++..+.+|+++-++..+++....-.+..++|.+...+ .+-|.-+....++.++.++..+.+|+.
T Consensus 359 qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 359 QASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 999999999999999999999999988888888888766554 467777777666666666667777764
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-05 Score=79.64 Aligned_cols=318 Identities=14% Similarity=0.083 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhhcccc
Q psy17080 158 SLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELV 237 (565)
Q Consensus 158 ~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~ 237 (565)
+.+.-+-.+...+.-+...++.+|+..+.=+..+.+++.++.++.+++++.++=+++-.+.+++.|........+.. .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 44555555666667777778888877655556667788889999999999999999999999998888777777644 44
Q ss_pred ccchhHHHHHHhhhhhHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHH-hhhcccchhHHHhcCCHHHHHHHHH
Q psy17080 238 GGKWLTIMGVMYLFPVPVGYIAISGIAYYSH----NWRLLQWVITIPTIFFLTL-WWIMPESPRWLVSMGRNKEAMKILG 312 (565)
Q Consensus 238 ~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~----~Wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~l~ 312 (565)
++ ...+.+..|.+.+.++|+..-..+. +-|..+++.....++..+. ++.+|.++... ..++.++
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~-~~~~~~~------ 209 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNR-PYQESES------ 209 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccC-CCcccCC------
Confidence 43 2456677777777777665433322 3465666655554444444 44444432100 0000000
Q ss_pred HHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccc-cHHHHHHHHHHHHHHHHHHHhhhhhh--hccCcCCCcHH
Q psy17080 313 DAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWR-TPLIRLISFVQYIIWFSVYLVYYGLV--LNLSNIGGDVY 389 (565)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 389 (565)
.++..++...++..+.+.+...+.++++-++ -+.+...++-....++.-++...+.. +..+....+..
T Consensus 210 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r 280 (402)
T PF02487_consen 210 ---------EDEAEDDLLESETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPR 280 (402)
T ss_pred ---------CCcccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHH
Confidence 0000000000000000011111122222111 11122222222233333333322221 11111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHH--HHHHHHHHHHh--hcCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17080 390 LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTT--LGAGLACLMTL--GFAPGSFITISLAMVGKFAISSSNVIIPIYT 465 (565)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (565)
-..-..++..-+|.+++---...+.-|++.+... .+-.+.+++-. .+.++.|..+++++.-|+.-|..+...+..+
T Consensus 281 ~~Y~~Y~~~YQ~GVFISRSS~~~~rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I 360 (402)
T PF02487_consen 281 DQYRWYQLLYQLGVFISRSSLPFFRIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRI 360 (402)
T ss_pred HHHHHHHHHHHHHHhhhhcceeeeehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1111222222222222211111122233322222 22111111111 1345557766777777888888888888888
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy17080 466 AELFPTKMRNLGVGASSVPAGVALILIPYLW 496 (565)
Q Consensus 466 ~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~ 496 (565)
.|-.|++.|..++|...+.-.+|-.++.++.
T Consensus 361 ~~~~~~~~REFslg~vsvsds~GI~lAgll~ 391 (402)
T PF02487_consen 361 SEEVPPEDREFSLGAVSVSDSLGILLAGLLG 391 (402)
T ss_pred HhcCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8888999999999999999999988888773
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.3e-06 Score=73.91 Aligned_cols=329 Identities=12% Similarity=0.006 Sum_probs=159.1
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVL 232 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 232 (565)
.+.++|.+.-+-+-..++...+.|-++|+-|||+.-+.-.+...+++ ++-.++.|-.++++|.+-|++.+..+..--++
T Consensus 70 gkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsW 148 (454)
T KOG4332|consen 70 GKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSAFESW 148 (454)
T ss_pred cCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHHHHHH
Confidence 33444545545555556677788899999999996554444333332 34457889999999999999998888777554
Q ss_pred -hccccccchhHHHHHHhh--------hhhHHHHHHHHHHHHHhcchh-----HHHHHHHHHHHHHHHHhhhcccchhHH
Q psy17080 233 -CMELVGGKWLTIMGVMYL--------FPVPVGYIAISGIAYYSHNWR-----LLQWVITIPTIFFLTLWWIMPESPRWL 298 (565)
Q Consensus 233 -i~e~~~~~~r~~~~~~~~--------~~~~lG~~~~~~l~~~~~~Wr-----~~~~~~~~~~~~~~~~~~~~pesp~~l 298 (565)
+.|... +|+.-.-+.. .+..+-.+++++.+..+.+|- .+|-..+....+...+.+ ..|-
T Consensus 149 liaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil-----~~W~ 221 (454)
T KOG4332|consen 149 LIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVIL-----SSWS 221 (454)
T ss_pred HHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH-----hhhh
Confidence 566552 2332211211 122222333334443333332 334333222222111111 1243
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy17080 299 VSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLV 378 (565)
Q Consensus 299 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (565)
..-++..|.++.+.+.+. ..+.+..++++..+-.+ ....-...|....
T Consensus 222 ENygdps~~kdlltqf~g-----------------------------aa~aiaSD~ki~LLG~i---qsLFE~smytFVF 269 (454)
T KOG4332|consen 222 ENYGDPSENKDLLTQFKG-----------------------------AARAIASDEKIALLGAI---QSLFEGSMYTFVF 269 (454)
T ss_pred hccCChhhhHHHHHHhhH-----------------------------hHHHHhcchHHHHHHHH---HHHHhhhhheeee
Confidence 344454444444433221 11223333332222111 1111122222222
Q ss_pred hccCcCC-----CcHHHHHHHHHHHHHHHHHHHHHHHhhcCC--hHHHHHHHHHHHHHHHHHhh---cCCch---HHHHH
Q psy17080 379 LNLSNIG-----GDVYLNTIISGIVEFPAIVISIFILLKMGR--RRPLCLTTLGAGLACLMTLG---FAPGS---FITIS 445 (565)
Q Consensus 379 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr--r~~l~~~~~~~~~~~~~~~~---~~~~~---~~~~~ 445 (565)
++.+.+. ...+..+..+.+..++|+-+...+..|-.. ...+.+.+++.+..+.+... ..|+. ....+
T Consensus 270 LWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i 349 (454)
T KOG4332|consen 270 LWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLI 349 (454)
T ss_pred eecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHH
Confidence 3333332 122333344445555666555555544332 23444444444443333221 11221 33345
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHH
Q psy17080 446 LAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWHMQS--INIHFPMGLLGVVGVLGGLSV 521 (565)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~--~~~~~~~~~~~~~~~i~~~~~ 521 (565)
..++.-...|..+|...-+-....|.+.|++.+-+...--.+-.-++-+....+. .+....|.++.+...++.+..
T Consensus 350 ~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~~ 427 (454)
T KOG4332|consen 350 GFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASILQ 427 (454)
T ss_pred HHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHHH
Confidence 5566677888889999999999999999987665543322222111111111111 233456666666666654443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.1e-06 Score=84.45 Aligned_cols=161 Identities=17% Similarity=0.183 Sum_probs=108.1
Q ss_pred HHHHhhhhhhhccCcCCCcHHHHHHHHHH-HHHHHHHHHHHHHhhc-----CChH-HHHHHHHHHHHHHHHHhhcCCch-
Q psy17080 369 SVYLVYYGLVLNLSNIGGDVYLNTIISGI-VEFPAIVISIFILLKM-----GRRR-PLCLTTLGAGLACLMTLGFAPGS- 440 (565)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~dr~-----grr~-~l~~~~~~~~~~~~~~~~~~~~~- 440 (565)
...+....++.++.+.+.+......+..+ .-.+..++.+.++||+ |||+ .+..+.++.+++...+....+..
T Consensus 14 ~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~ 93 (402)
T PRK11902 14 PLALTSGTLQAWMTVEGLDIQTIGFFSLVGQAYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAA 93 (402)
T ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccch
Confidence 34444455666666666554433322221 1246788999999999 7765 67777777776666665222222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHH--HHHH-hhhhhHHHHHHHHHHH
Q psy17080 441 -FITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLW--HMQS-INIHFPMGLLGVVGVL 516 (565)
Q Consensus 441 -~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~--~~~~-~~~~~~~~~~~~~~~i 516 (565)
+...+..++.++......+...+++.|.+|+++|+++.++..+...+|.++++.+. ..+. .++...|++.+++.++
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~ 173 (402)
T PRK11902 94 LWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLA 173 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence 33344444555666666778889999999999999999999988888988887762 2332 3788888888887776
Q ss_pred HHHHHhhcccCCC
Q psy17080 517 GGLSVLLLPDTTG 529 (565)
Q Consensus 517 ~~~~~~~l~et~~ 529 (565)
..+..+++||++.
T Consensus 174 ~~l~~~~~~e~~~ 186 (402)
T PRK11902 174 GALTTLWAPEPEV 186 (402)
T ss_pred HHHHHHhcCCCcc
Confidence 6665566777643
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.2e-07 Score=92.84 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=107.9
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhh
Q psy17080 154 SSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLC 233 (565)
Q Consensus 154 ~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 233 (565)
....|...++..+...++.+..|++.||+|||+.+.++.++.++..++..++++.+.+++.+++.|++..........++
T Consensus 253 ~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 332 (396)
T TIGR00882 253 TRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYI 332 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888888888899999999999999999999999998888888878889999999999999999776666667777
Q ss_pred ccccccchhHHHHHH-hhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHH
Q psy17080 234 MELVGGKWLTIMGVM-YLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTL 287 (565)
Q Consensus 234 ~e~~~~~~r~~~~~~-~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~ 287 (565)
.+..+++.++...+. .+....+|..+++.+++.+ .||+..|++.++..++..+.
T Consensus 333 ~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 333 TSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 777887777765554 5567788888887776654 37889999887776555443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-06 Score=85.02 Aligned_cols=127 Identities=22% Similarity=0.297 Sum_probs=105.0
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHhhhhhhhHhhhhhh
Q psy17080 155 SLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPW--FELYLVVRFFLGFFCVSIVFSGFVL 232 (565)
Q Consensus 155 ~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~--~~~l~~~r~l~G~~~~~~~~~~~~~ 232 (565)
...++..+.+.++..++.++.|.++||+|||+.+..+.....++.+..++..+ .+.+++.|++.|++.+...+...++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 46789999999999999999999999999998888888776666777777776 8999999999999999999999999
Q ss_pred hcccccc-chhHHHHHHhhh-hhHHHHHHHHHHHHHh-----cchhHHHHHHHHHH
Q psy17080 233 CMELVGG-KWLTIMGVMYLF-PVPVGYIAISGIAYYS-----HNWRLLQWVITIPT 281 (565)
Q Consensus 233 i~e~~~~-~~r~~~~~~~~~-~~~lG~~~~~~l~~~~-----~~Wr~~~~~~~~~~ 281 (565)
+.|+.++ ++|+...+.... ...+|.++++.++..+ .+||..+.+.....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9999988 678888888777 5777777777665443 37888666555444
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-06 Score=90.51 Aligned_cols=175 Identities=14% Similarity=0.140 Sum_probs=114.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhh----hhhhccCcCCCc--HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Q psy17080 351 WRTPLIRLISFVQYIIWFSVYLVYY----GLVLNLSNIGGD--VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTL 424 (565)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~ 424 (565)
++++++...+...++.+...++... .+.....+++.+ ..+......+...++.++.|.++|.+|||..++.+.+
T Consensus 37 ~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~ 116 (599)
T PF06609_consen 37 YRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSL 116 (599)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Confidence 4555555444444443333322222 122223344433 3344455667777888999999999999999999999
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHhh
Q psy17080 425 GAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWH--MQSIN 502 (565)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~--~~~~~ 502 (565)
+..++.++.. ..++....+....+.+++.+... .....++|+.|.+.|..+.++.....-....++|.+.. ..+.+
T Consensus 117 l~vvG~Iv~a-tA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~ 194 (599)
T PF06609_consen 117 LGVVGSIVCA-TAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSG 194 (599)
T ss_pred HHHhHHHHhh-cCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCC
Confidence 9999999888 66666677777778788766553 45666899999999988877766554444445666622 23457
Q ss_pred hhhHHHHHHHHHHHHHHHH--hhcccC
Q psy17080 503 IHFPMGLLGVVGVLGGLSV--LLLPDT 527 (565)
Q Consensus 503 ~~~~~~~~~~~~~i~~~~~--~~l~et 527 (565)
|++.|++.+++..++.+++ ++.|.+
T Consensus 195 WRw~~~~~~i~~~i~~vl~~~fY~PP~ 221 (599)
T PF06609_consen 195 WRWIFYIFIIWSGIALVLIFFFYFPPP 221 (599)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 8888888777766665443 344443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.3e-06 Score=85.96 Aligned_cols=138 Identities=11% Similarity=0.043 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy17080 390 LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELF 469 (565)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 469 (565)
........+..++.+.+|++.||+|.|+++.++.+..++..++.. +..+...+.+.-++.|++.+..+ ..+.++...+
T Consensus 66 ~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~-fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~Wf 143 (511)
T TIGR00806 66 EIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLL-LGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLV 143 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC
Confidence 344455567778899999999999999999999999999888888 65566677777888899999988 8899999999
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHhhhhh---HHHHHHHHHHHHHHHHhhcccCCC
Q psy17080 470 PTKMRNLGVGASSVPAGVALILIPYLWH-MQSINIHF---PMGLLGVVGVLGGLSVLLLPDTTG 529 (565)
Q Consensus 470 p~~~r~~~~g~~~~~~~lg~~i~p~i~~-~~~~~~~~---~~~~~~~~~~i~~~~~~~l~et~~ 529 (565)
|++.|+++.|+.+....+|.++++.+.. +...++.. ...+......++.++.+++|..++
T Consensus 144 P~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 144 PPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 9999999999999999999999888822 44444433 223333444556667788886655
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.9e-07 Score=97.18 Aligned_cols=138 Identities=13% Similarity=0.082 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCC-------------------------------
Q psy17080 390 LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAP------------------------------- 438 (565)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~------------------------------- 438 (565)
+......++..++.++.+++.||.+||+.+.++.++.+++.++.+ +.+
T Consensus 72 ~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~a-lphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~ 150 (633)
T TIGR00805 72 LINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLS-LPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLT 150 (633)
T ss_pred eeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHh-ChHHhcCCccccccccccccccccccccccCCCC
Confidence 334455667778889999999999999999999999999988876 321
Q ss_pred ------------------c-h-HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH-
Q psy17080 439 ------------------G-S-FITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWH- 497 (565)
Q Consensus 439 ------------------~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~- 497 (565)
+ . ..+++.-++.|++.+..++...+++.|.+|++.|+...|+.+....+|..+++.+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~ 230 (633)
T TIGR00805 151 QALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSF 230 (633)
T ss_pred CCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 0 1 223445667777777888888999999999999999999999999999999988721
Q ss_pred -HHH----------------------hhhhhHHHHHHHHHHHHHHHHhhcccCC
Q psy17080 498 -MQS----------------------INIHFPMGLLGVVGVLGGLSVLLLPDTT 528 (565)
Q Consensus 498 -~~~----------------------~~~~~~~~~~~~~~~i~~~~~~~l~et~ 528 (565)
... ..|+..|++.+++.++.++.++++|++.
T Consensus 231 l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~l 284 (633)
T TIGR00805 231 CLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKAL 284 (633)
T ss_pred HHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 211 1256678888888777766667777654
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.4e-06 Score=79.61 Aligned_cols=342 Identities=12% Similarity=0.060 Sum_probs=199.4
Q ss_pred HhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhhccccccchhHHHHH
Q psy17080 168 VAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGV 247 (565)
Q Consensus 168 ~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~ 247 (565)
++++-++.=.+.|-.-.|++++.-.+.......+.-+.++.+.+=+.-++.|... ....+-++++-+.++|+++.++.+
T Consensus 55 YLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~t-AaEIAYysYIYs~Vd~~~Yqrvt~ 133 (433)
T KOG3810|consen 55 YLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPAT-AAEIAYYSYIYSKVDPEMYKRVTG 133 (433)
T ss_pred HHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHH-HHHHhhhheeeeecCHHHHHHHHH
Confidence 4444455556889888899999888888888888889999999999999999984 456778899999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHh-----cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCC
Q psy17080 248 MYLFPVPVGYIAISGIAYYS-----HNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKL 322 (565)
Q Consensus 248 ~~~~~~~lG~~~~~~l~~~~-----~~Wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~ 322 (565)
...+..-.|...+..++..+ .+++.+-.+......+..+..+++|..+|-+.-+.+.++ ....+..+.+..
T Consensus 134 y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~--~~v~~~e~~~~~-- 209 (433)
T KOG3810|consen 134 YCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDK--ISVGDLEEMNPQ-- 209 (433)
T ss_pred HhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhccccc--ceeccchhcCcc--
Confidence 88888888888777777664 245556666555555566667788877654444433331 111111111110
Q ss_pred chhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHH-HHHHhhhhhhhccCcCCCcHH----HHHHHHHH
Q psy17080 323 PLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWF-SVYLVYYGLVLNLSNIGGDVY----LNTIISGI 397 (565)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 397 (565)
.+..+.++. ....-..++.+..++|.+.+..+--.+... .....+|...++-.-...... ..=.+..+
T Consensus 210 -~~~~~~l~~------~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tl 282 (433)
T KOG3810|consen 210 -ASYMSYLRG------AFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTL 282 (433)
T ss_pred -chhhHHHHH------HHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHH
Confidence 000000000 000011234455666765554443222222 233444544444332221111 11223344
Q ss_pred HHHHHHHHHHHHHhhcCChH--HHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhh
Q psy17080 398 VEFPAIVISIFILLKMGRRR--PLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRN 475 (565)
Q Consensus 398 ~~~~~~~~~~~l~dr~grr~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 475 (565)
.+.++.+..|.+--++.|.. .+..+....+...+.+. ...+.|...+..++.+.......++...-+++....+.-|
T Consensus 283 LGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~-~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~g 361 (433)
T KOG3810|consen 283 LGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA-QTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFG 361 (433)
T ss_pred HHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh-cccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhhe
Confidence 55666777777765655542 33333333333333333 4555577777777777777776677766666767777778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhhhHHHHHHHHHHHHHHHHhh
Q psy17080 476 LGVGASSVPAGVALILIPYLWHMQSI-----------NIHFPMGLLGVVGVLGGLSVLL 523 (565)
Q Consensus 476 ~~~g~~~~~~~lg~~i~p~i~~~~~~-----------~~~~~~~~~~~~~~i~~~~~~~ 523 (565)
..+|+..+++-+-..+-..+. .+.. -+..-|++.+++.+++..+...
T Consensus 362 LvFGiNTFvAl~lQsilT~iV-vd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~ 419 (433)
T KOG3810|consen 362 LVFGINTFVALILQSILTLIV-VDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYL 419 (433)
T ss_pred eeeehHHHHHHHHHHhheEEE-EcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHH
Confidence 888888776655444433331 1211 1334577788887777665433
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-05 Score=84.63 Aligned_cols=141 Identities=13% Similarity=0.071 Sum_probs=106.7
Q ss_pred eccccccCcchhhHHHHHHHHHHHhhhhhhhhccccc-ccchhhHHHHHHHHHHHHHHHHhcch--------hHHHHHHH
Q psy17080 145 SEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDK-FGRKKALMGSLVFQLVLGVLVAISPW--------FELYLVVR 215 (565)
Q Consensus 145 ~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr-~Grr~~l~~~~~l~~~~~~~~~~~~~--------~~~l~~~r 215 (565)
+.+++ +......+...+....-+..+++|+++|+ +||++.++++.++..++.++.+++.. ....+++-
T Consensus 16 ~~lg~---~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gL 92 (654)
T TIGR00926 16 NFLGF---SESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGL 92 (654)
T ss_pred HHcCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHH
Confidence 34566 55666667777777777888899999996 79999999999999999888876421 23466778
Q ss_pred HHHhhhhhhhHhhhhhhhccccccch---hHHHHHHhhhhhHHHHHHHHHHHHHhc----------chhHHHHHHHHHHH
Q psy17080 216 FFLGFFCVSIVFSGFVLCMELVGGKW---LTIMGVMYLFPVPVGYIAISGIAYYSH----------NWRLLQWVITIPTI 282 (565)
Q Consensus 216 ~l~G~~~~~~~~~~~~~i~e~~~~~~---r~~~~~~~~~~~~lG~~~~~~l~~~~~----------~Wr~~~~~~~~~~~ 282 (565)
.+..+|.|+.-+...+...|.+++++ |.....++..+.++|.++++.+...+. +|...|.+.++..+
T Consensus 93 aLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ 172 (654)
T TIGR00926 93 ALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMI 172 (654)
T ss_pred HHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHH
Confidence 88889999999999999999987543 556677777888888888776665542 48888888777666
Q ss_pred HHHHHh
Q psy17080 283 FFLTLW 288 (565)
Q Consensus 283 ~~~~~~ 288 (565)
+.++.+
T Consensus 173 ia~lvf 178 (654)
T TIGR00926 173 LALIVF 178 (654)
T ss_pred HHHHHH
Confidence 555443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=89.33 Aligned_cols=144 Identities=11% Similarity=-0.012 Sum_probs=105.5
Q ss_pred ccceeeccccccCcchhhHHHHHHHH-HHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHh------cchhHHHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFL-LGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAI------SPWFELYL 212 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~-lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~------~~~~~~l~ 212 (565)
.+...+|.++ +..+.|++..... .+..++.++.|++.||+|+|+.+..+.++.++..+.... .++...+.
T Consensus 231 ~~~~l~~~G~---s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (390)
T TIGR02718 231 SKLYLVDAGW---PLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAW 307 (390)
T ss_pred hhHHHHhcCC---CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHH
Confidence 3445566788 7788898888775 467788999999999999999988877665333332221 23334445
Q ss_pred HHHHHHhhhhhhhHhhhhhhhcccccc-chhHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHH
Q psy17080 213 VVRFFLGFFCVSIVFSGFVLCMELVGG-KWLTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLT 286 (565)
Q Consensus 213 ~~r~l~G~~~~~~~~~~~~~i~e~~~~-~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~ 286 (565)
....+.+++.+...+...+.+.+..++ +++++..++.+....+|..+++.+++.+ .||+..|++.++..++..+
T Consensus 308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 308 SCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 555666777777778888887777776 8889999999999999999999887765 3678888877766555443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.8e-07 Score=87.59 Aligned_cols=129 Identities=19% Similarity=0.104 Sum_probs=100.4
Q ss_pred HHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhhccccccchhHH
Q psy17080 165 LLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTI 244 (565)
Q Consensus 165 ~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~ 244 (565)
.+.-.-|.++.+.+.||+|||+.+..+.+++++..++.....+-..+.+.-|..-++..+.+.+.++|..|++|.+-|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 34566789999999999999999999999999999988776554444444444445556667888999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHhhhccc
Q psy17080 245 MGVMYLFPVPVGYIAISGIAYYSH-NWRLLQWVITIPTIFFLTLWWIMPE 293 (565)
Q Consensus 245 ~~~~~~~~~~lG~~~~~~l~~~~~-~Wr~~~~~~~~~~~~~~~~~~~~pe 293 (565)
..|.-....-+|.++.|.++.... +-..+..+.+..+++..+...++|-
T Consensus 471 gvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred chhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeee
Confidence 999999999999999999984432 2233445566666777777777773
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-05 Score=81.89 Aligned_cols=147 Identities=11% Similarity=0.033 Sum_probs=94.7
Q ss_pred cCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHh----hcCChHHHHHH-HHHHHHHHHHHhhcCCch------------
Q psy17080 381 LSNIGGDV---YLNTIISGIVEFPAIVISIFILL----KMGRRRPLCLT-TLGAGLACLMTLGFAPGS------------ 440 (565)
Q Consensus 381 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~d----r~grr~~l~~~-~~~~~~~~~~~~~~~~~~------------ 440 (565)
.+.++.+. ........+..++..++.|+++| |+|||+.++.. .....++.+++. +.++.
T Consensus 31 l~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~-~~~~~~~~~~~~~~~~~ 109 (477)
T TIGR01301 31 VQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIG-FAADIGHLFGDNLDKKT 109 (477)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHH-hCchhhhhccccccccc
Confidence 34444443 33444556677788899999999 59999988775 444444444444 32221
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhh--hhHHHHHHHHHHHHHHHHHHHHHHH---H-h--------
Q psy17080 441 -----FITISLAMVGKFAISSSNVIIPIYTAELFPTKMR--NLGVGASSVPAGVALILIPYLWHMQ---S-I-------- 501 (565)
Q Consensus 441 -----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~g~~~~~~~lg~~i~p~i~~~~---~-~-------- 501 (565)
+..++...+..++.....+...++++|+.|+++| +.+.++.+.+..+|+++++.+.... . .
T Consensus 110 ~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~ 189 (477)
T TIGR01301 110 KPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC 189 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence 1222233344556666677778999999998865 5788888899999999998873221 1 1
Q ss_pred -----hhhhHHHHHHHHHHHHHHHH-hhcccCC
Q psy17080 502 -----NIHFPMGLLGVVGVLGGLSV-LLLPDTT 528 (565)
Q Consensus 502 -----~~~~~~~~~~~~~~i~~~~~-~~l~et~ 528 (565)
+....|.+.+++.+++.++. +..+|..
T Consensus 190 ~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 190 GVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 34556777666666665554 5567754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-09 Score=112.48 Aligned_cols=139 Identities=19% Similarity=0.238 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCC---chHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17080 390 LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAP---GSFITISLAMVGKFAISSSNVIIPIYTA 466 (565)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (565)
.......++.++|.++.|++.||+|||+.+.++.++..++.++.. +.+ +.+...+.-++.|++.+...+....++.
T Consensus 50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~ 128 (451)
T PF00083_consen 50 LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIA-FAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYIS 128 (451)
T ss_pred HHHHHHHhhhccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 344455677888999999999999999999999999988888887 666 5667777778889999999999999999
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHH-HH----HhhhhhHHHHHHHHHHHHHHHHhhcccCCC
Q psy17080 467 ELFPTKMRNLGVGASSVPAGVALILIPYLWH-MQ----SINIHFPMGLLGVVGVLGGLSVLLLPDTTG 529 (565)
Q Consensus 467 e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~-~~----~~~~~~~~~~~~~~~~i~~~~~~~l~et~~ 529 (565)
|..|++.|+...++.+....+|..++..+.. .. ...|...+.+..+..++..+...++||+..
T Consensus 129 E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~ 196 (451)
T PF00083_consen 129 EIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPR 196 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999998888888877776621 11 123566666666666666666688999866
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.4e-06 Score=87.68 Aligned_cols=135 Identities=16% Similarity=0.077 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCch-HHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17080 390 LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGS-FITISLAMVGKFAISSSNVIIPIYTAEL 468 (565)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 468 (565)
........+.+++.+.++++.||+|-|+++..+.++.+++.++........ +.++++-++.|++.+..+|....+..+-
T Consensus 77 ~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W 156 (466)
T KOG2532|consen 77 LIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKW 156 (466)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeE
Confidence 444455677888999999999999999999999999999888887433322 5566777888999999999999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHH-H-HHHH-hhhhhHHHHHHHHHHHHHHHHhhc
Q psy17080 469 FPTKMRNLGVGASSVPAGVALILIPYL-W-HMQS-INIHFPMGLLGVVGVLGGLSVLLL 524 (565)
Q Consensus 469 ~p~~~r~~~~g~~~~~~~lg~~i~p~i-~-~~~~-~~~~~~~~~~~~~~~i~~~~~~~l 524 (565)
.|++.|++..++......+|.+++-.+ . +.+. .||...|.+.++++++..++++++
T Consensus 157 ~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 157 APPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888888776433 2 2334 789999999999998887776443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.9e-06 Score=84.92 Aligned_cols=114 Identities=11% Similarity=0.026 Sum_probs=91.0
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHhhhhhhhHhhhh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISP--WFELYLVVRFFLGFFCVSIVFSGF 230 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~ 230 (565)
+....++......++.+++.++.++++||+|+|+++.++.++.+++.++..+.+ +++.+++..++.|+|.+...+...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~ 341 (448)
T PRK09848 262 TGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMW 341 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445677888999999999999999999999998888877777654 677777788899999999999999
Q ss_pred hhhccccccc-------hhHHHHHHhhhhhHHHHHHHHHHHHH
Q psy17080 231 VLCMELVGGK-------WLTIMGVMYLFPVPVGYIAISGIAYY 266 (565)
Q Consensus 231 ~~i~e~~~~~-------~r~~~~~~~~~~~~lG~~~~~~l~~~ 266 (565)
++..|..+.+ ++|...++.+....+|..+++.+...
T Consensus 342 al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 342 ALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred HHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888754 35888889888888888887766543
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.8e-07 Score=93.96 Aligned_cols=152 Identities=16% Similarity=0.155 Sum_probs=135.0
Q ss_pred CcccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhccccccc--chhhHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q psy17080 138 SFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFG--RKKALMGSLVFQLVLGVLVAISPWFELYLVVR 215 (565)
Q Consensus 138 ~~~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~G--rr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r 215 (565)
.+.+...++.+. ++.+.+.+.++..+...++.++.|+++|+.. ++.+..++++..+++.+.+++.++++.++..-
T Consensus 319 ~~l~~~~~~~g~---~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~ 395 (509)
T KOG2504|consen 319 VYLPSYAKSLGL---SSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFS 395 (509)
T ss_pred HHHHHHHhhcCC---ChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 346667778888 8888999999999999999999999999988 56677788888899999999999999999999
Q ss_pred HHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHhhhc
Q psy17080 216 FFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSH----NWRLLQWVITIPTIFFLTLWWIM 291 (565)
Q Consensus 216 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~----~Wr~~~~~~~~~~~~~~~~~~~~ 291 (565)
.+.|++.|.........+.|..+.++-..+.++.....+++.+++|.++..+. +|...|+..++..++....+++.
T Consensus 396 ~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~ 475 (509)
T KOG2504|consen 396 ILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLIL 475 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHh
Confidence 99999999999999899999999999999999999999999999999988753 58889999888888877777666
Q ss_pred c
Q psy17080 292 P 292 (565)
Q Consensus 292 p 292 (565)
|
T Consensus 476 ~ 476 (509)
T KOG2504|consen 476 R 476 (509)
T ss_pred H
Confidence 6
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.4e-05 Score=75.53 Aligned_cols=58 Identities=17% Similarity=0.087 Sum_probs=48.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 438 PGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
++++..++..++.++..|...+....+..+..+++.|..+-.+++.+-.+|-.+|..+
T Consensus 370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777788889999999989999999999999999888888888877777777665
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.6e-06 Score=80.40 Aligned_cols=134 Identities=14% Similarity=0.105 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCch--HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17080 388 VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGS--FITISLAMVGKFAISSSNVIIPIYT 465 (565)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (565)
..+...+..+...+.++.-+++.||+|.|++...++++..+-++.+....... +..+++.++.+++ +..+.+...++
T Consensus 51 ~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~ 129 (417)
T COG2223 51 KGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNA 129 (417)
T ss_pred HHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccc
Confidence 34555566677778889999999999999999999999888888777333222 3444444444433 44578888999
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhh---hhhHHHHHHHHHHHHHHHHhh
Q psy17080 466 AELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSIN---IHFPMGLLGVVGVLGGLSVLL 523 (565)
Q Consensus 466 ~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~---~~~~~~~~~~~~~i~~~~~~~ 523 (565)
++.+|++.+|.+.|+.. .+++|..+..++ ......+ +.....+..+..++..+..++
T Consensus 130 s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~ 191 (417)
T COG2223 130 SFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWL 191 (417)
T ss_pred cccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997 777766554444 1233334 666666666666665555433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.8e-06 Score=81.38 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAEL 468 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 468 (565)
.+......++..++.++.+++.||+|||+.+.++.++.+++.+.. ..++.+..++..++.+++.+...+....++.|.
T Consensus 38 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~ 115 (355)
T TIGR00896 38 GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR--SAPGTALLFAGTALIGVGIAIINVLLPSLIKRD 115 (355)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHHHhccchHHHHHh
Confidence 344556667788899999999999999999998887776665544 334555555566667777777666666777888
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHh--hhhhHHHHHHHHHHHHHHHHhhcccCC
Q psy17080 469 FPTKMRNLGVGASSVPAGVALILIPYLW--HMQSI--NIHFPMGLLGVVGVLGGLSVLLLPDTT 528 (565)
Q Consensus 469 ~p~~~r~~~~g~~~~~~~lg~~i~p~i~--~~~~~--~~~~~~~~~~~~~~i~~~~~~~l~et~ 528 (565)
+| +.|+++.|+.+....+|..++|.+. ..+.. ++...+.+.+++.++.. ..++|+.+
T Consensus 116 ~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~--~~~~~~~~ 176 (355)
T TIGR00896 116 FP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL--LAWIPQVR 176 (355)
T ss_pred Cc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHhhhhc
Confidence 86 5789999999998889988888772 22222 25555555554433332 23455544
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00032 Score=70.97 Aligned_cols=328 Identities=14% Similarity=0.064 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHH------hc--c----hhHHHHHH---HHHHhhhh
Q psy17080 158 SLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVA------IS--P----WFELYLVV---RFFLGFFC 222 (565)
Q Consensus 158 ~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~------~~--~----~~~~l~~~---r~l~G~~~ 222 (565)
+...-.-.+..++.++..|.+.||..|.+++..+.+..-++..+.+ +. . +-+..... -.+.|...
T Consensus 41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 120 (432)
T PF06963_consen 41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIE 120 (432)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH
Confidence 3344444566778888899999999999998888766544333222 11 1 11222111 11222111
Q ss_pred hhh-Hhhhhhhhccccc------cchhHHHHHHhhhhhHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHH-hhhc
Q psy17080 223 VSI-VFSGFVLCMELVG------GKWLTIMGVMYLFPVPVGYIAISGIAYYSH---NWRLLQWVITIPTIFFLTL-WWIM 291 (565)
Q Consensus 223 ~~~-~~~~~~~i~e~~~------~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~---~Wr~~~~~~~~~~~~~~~~-~~~~ 291 (565)
-.. .....+.=.||+. ++.+.+.++...-.=-+.-+++|.+.+.+. +.+....+.+...++.++. ++++
T Consensus 121 ~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l 200 (432)
T PF06963_consen 121 RLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLL 200 (432)
T ss_pred HHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111222245542 344455555555444555666676666553 3444444444444443333 2221
Q ss_pred ----ccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHH
Q psy17080 292 ----PESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIW 367 (565)
Q Consensus 292 ----pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 367 (565)
...|. |..+++.++....-... +..+........+... +.-+.....++..+++|.+...+.. .+.+
T Consensus 201 ~~VY~~~P~-L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~w~~Y~~q~vflas~al-alLY 271 (432)
T PF06963_consen 201 ARVYNSVPA-LAVKKRSSESESSSDEE-SSSESSSDPSILKRLW------NPLRTIIRGWRTYFRQPVFLASFAL-ALLY 271 (432)
T ss_pred HHHHHhChH-hcCCCCCcccccccccc-ccccccchhhHHHHHH------HHHHHHhccHHHHHhCHHHHHHHHH-HHHH
Confidence 12222 21221111110000000 0000000000000000 0011123456667777754443333 2333
Q ss_pred HH-HHHhhhhhhhccCcCCCcHHH---HHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH--hhcCCch-
Q psy17080 368 FS-VYLVYYGLVLNLSNIGGDVYL---NTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMT--LGFAPGS- 440 (565)
Q Consensus 368 ~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~--~~~~~~~- 440 (565)
+. ..+...... +....+.+... .-.+.++.++.|+++..++.+|+|..+.-.++......+..+. .++.+..
T Consensus 272 ~TVLsf~~lmt~-yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~ 350 (432)
T PF06963_consen 272 FTVLSFGGLMTA-YLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSP 350 (432)
T ss_pred HHHhcCcHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 32 111111111 12222444333 3335566788899999999999998877666654433222111 1122221
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 441 ------FITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 441 ------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
..++....+..+|.=..--....+.+|..|++.||...|+-+...++...+.-.+
T Consensus 351 ~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 351 FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 2333334445555544445667788999999999999999988887776665444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=98.31 E-value=8e-06 Score=84.14 Aligned_cols=141 Identities=14% Similarity=0.048 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17080 388 VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAE 467 (565)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 467 (565)
......++.++.+++.+.++.+.||++-.+.+....++.++..++.. ...+.+..+++-++.|+..+..+|....++..
T Consensus 83 l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~-~~~s~~~~ialr~llGl~es~~wP~~~~~lg~ 161 (495)
T KOG2533|consen 83 LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTA-AVHSFPGLIALRFLLGLFESGGWPGVVAILGN 161 (495)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhcccchHHHHHHHh
Confidence 34555667788889999999999999976666666555555554444 35556778888899999999999999999999
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHH--------HHhhhhhHHHHHHHHHHHHHHHH-hhcccCCC
Q psy17080 468 LFPTKMRNLGVGASSVPAGVALILIPYLWHM--------QSINIHFPMGLLGVVGVLGGLSV-LLLPDTTG 529 (565)
Q Consensus 468 ~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~--------~~~~~~~~~~~~~~~~~i~~~~~-~~l~et~~ 529 (565)
-+.++.|+.-+|+.+....+|++++.++... ...+|++.|++-|++.++.+++. +++|+...
T Consensus 162 wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 162 WYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred hcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 9999999999999999999999999988332 34678999999999988877654 66776433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.8e-06 Score=81.04 Aligned_cols=124 Identities=14% Similarity=0.097 Sum_probs=95.6
Q ss_pred cccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhH
Q psy17080 147 WDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIV 226 (565)
Q Consensus 147 ~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 226 (565)
+++ +..+.++..+.+..+.++|.++.+++.||+|+|+++..+.++..++.++....++... ...-++.|++.+..+
T Consensus 173 ~g~---s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~ 248 (310)
T TIGR01272 173 LGL---PEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMF 248 (310)
T ss_pred CCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHH
Confidence 577 7788899999999999999999999999999999998888888887766666554433 345668999999999
Q ss_pred hhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhc---chhHHHHH
Q psy17080 227 FSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSH---NWRLLQWV 276 (565)
Q Consensus 227 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~---~Wr~~~~~ 276 (565)
|...+...+..+++ .+.+.++. ....+|.++.|.+.+.+. +.+..+++
T Consensus 249 P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v 299 (310)
T TIGR01272 249 PTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFAL 299 (310)
T ss_pred HHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHH
Confidence 99999998887654 45555664 455678888887665542 45555553
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-06 Score=85.97 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=90.7
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhccccc----ccchhhHHHH-HHHHHHHHHHHHhcchhH-----
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDK----FGRKKALMGS-LVFQLVLGVLVAISPWFE----- 209 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr----~Grr~~l~~~-~~l~~~~~~~~~~~~~~~----- 209 (565)
.+....+.++ +....+.+--+-.+...+.+|+.|..+|| |||||.++.. .++..++.++..++.++.
T Consensus 55 ~tPyl~~lGv---phk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd 131 (498)
T KOG0637|consen 55 LTPYLQSLGV---PHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGD 131 (498)
T ss_pred ccHHHHHcCC---CcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcC
Confidence 5666667777 55555666666677778899999999996 8998876664 555566777777775543
Q ss_pred ------------HHHHHHHHHhhhhhhhHhhhhhhhccccccchhHH-HHHHhhhhhHHHHHHHHHHHHHh
Q psy17080 210 ------------LYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTI-MGVMYLFPVPVGYIAISGIAYYS 267 (565)
Q Consensus 210 ------------~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~-~~~~~~~~~~lG~~~~~~l~~~~ 267 (565)
.++++-.+.=++.......+-+++.|...++++.+ +++++....++|..++..++.+.
T Consensus 132 ~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 132 NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 33344444445566778888999999998877766 88999888888888887777544
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.4e-05 Score=82.40 Aligned_cols=111 Identities=16% Similarity=0.175 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHhhhhhhhHhhhhhhh
Q psy17080 156 LESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISP--WFELYLVVRFFLGFFCVSIVFSGFVLC 233 (565)
Q Consensus 156 ~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i 233 (565)
..+....+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+ +.+.+++.-++.|++.+.......+++
T Consensus 261 ~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ 340 (428)
T PF13347_consen 261 LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAML 340 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhccccccccccc
Confidence 346677788999999999999999999999999999999999999988886 999999999999999999999999999
Q ss_pred cccccc-------chhHHHHHHhhhhhHHHHHHHHHHHHH
Q psy17080 234 MELVGG-------KWLTIMGVMYLFPVPVGYIAISGIAYY 266 (565)
Q Consensus 234 ~e~~~~-------~~r~~~~~~~~~~~~lG~~~~~~l~~~ 266 (565)
+|..+. ++.|...+......-+|..+++.+...
T Consensus 341 ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~ 380 (428)
T PF13347_consen 341 ADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGL 380 (428)
T ss_pred ccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 999873 334778888887777777776665443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.3e-05 Score=80.76 Aligned_cols=114 Identities=9% Similarity=-0.031 Sum_probs=86.3
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHh-----cchhHHHHHHHHHHhhhhhhhHh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAI-----SPWFELYLVVRFFLGFFCVSIVF 227 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~ 227 (565)
+....+++.+...++.+++.+++++++||+|+|+.++.+.++..++.+...+ ..+.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777888999999999999999999999888776666555432 34566777778889999999999
Q ss_pred hhhhhhccccc-------cchhHHHHHHhhhhhHHHHHHHHHHHHH
Q psy17080 228 SGFVLCMELVG-------GKWLTIMGVMYLFPVPVGYIAISGIAYY 266 (565)
Q Consensus 228 ~~~~~i~e~~~-------~~~r~~~~~~~~~~~~lG~~~~~~l~~~ 266 (565)
...++++|..+ .+..|...+......-+|..+++.+.+.
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~ 389 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGV 389 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999865 2333667778777777777776655543
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=98.22 E-value=9.1e-06 Score=79.99 Aligned_cols=103 Identities=11% Similarity=0.027 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCc---h----HHHHHHHHHHHHHHHHHHHHH
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPG---S----FITISLAMVGKFAISSSNVII 461 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~ 461 (565)
........++.+.|.++.|++.||+|||++....++++.++.++.. +... . +.+...-++.|+++|.-+|..
T Consensus 87 ~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~-~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlS 165 (538)
T KOG0252|consen 87 ALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSG-LSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLS 165 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhc-cCCCCCCCcchhhHHHHHHHHhhccccCCCcch
Confidence 3445566678899999999999999999999999988888887554 3211 1 333444567788888889999
Q ss_pred HHhcccccchhhhhhHHHHHHHHHHHHHHHH
Q psy17080 462 PIYTAELFPTKMRNLGVGASSVPAGVALILI 492 (565)
Q Consensus 462 ~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~ 492 (565)
.+.++|....+.||.-.+....+..+|...+
T Consensus 166 AtI~SE~an~~~RGa~iaavFa~Qg~GilaG 196 (538)
T KOG0252|consen 166 ATIMSESANKKTRGAFIAAVFAMQGFGILAG 196 (538)
T ss_pred HHHhhhhhhhccccceeEEEEEecchhHhhc
Confidence 9999999999999998877655555444333
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-05 Score=80.73 Aligned_cols=127 Identities=17% Similarity=0.177 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhh--h
Q psy17080 400 FPAIVISIFILLK-MGRRRPLCLTTLGAGLACLMTLGFA--PGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKM--R 474 (565)
Q Consensus 400 ~~~~~~~~~l~dr-~grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r 474 (565)
-...+++||++|| +|+|+.+..+.++..++.+++. .. .+...+.+.+.+..++.|..=+....+..|++|++. |
T Consensus 75 Y~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~-~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dprr 153 (498)
T COG3104 75 YLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLA-ISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRR 153 (498)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh-ccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCccc
Confidence 3467889999999 5999999999999999999988 44 234455555555568888888888999999998765 6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhcccC
Q psy17080 475 NLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLLPDT 527 (565)
Q Consensus 475 ~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~et 527 (565)
..++++..+..++|++++|++ ...+..++...|.+.++-..++.+.+...++.
T Consensus 154 D~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~ 208 (498)
T COG3104 154 DGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRH 208 (498)
T ss_pred CCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccch
Confidence 777778888889999999999 44566788888999988888888877666643
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.15 E-value=3e-05 Score=77.40 Aligned_cols=141 Identities=12% Similarity=0.145 Sum_probs=115.3
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVL 232 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 232 (565)
++...|.+.+...+.-++.-.+..++.+|+|.|+.++++.++.++=.++++++++.+.+.+.+.+.|+-.+........|
T Consensus 257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkY 336 (412)
T PF01306_consen 257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKY 336 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccchhHHHHHH-hhhhhHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHH-hhhccc
Q psy17080 233 CMELVGGKWLTIMGVM-YLFPVPVGYIAISGIAYYSH---NWRLLQWVITIPTIFFLTL-WWIMPE 293 (565)
Q Consensus 233 i~e~~~~~~r~~~~~~-~~~~~~lG~~~~~~l~~~~~---~Wr~~~~~~~~~~~~~~~~-~~~~pe 293 (565)
+.+.+|+|..++...+ .+.+..+|..+.+.+++... |.+..|++.+.+.++..++ .+.+++
T Consensus 337 I~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 337 ITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 9999999887776666 46788888888877776653 6788888888776665555 444443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=4e-05 Score=79.54 Aligned_cols=111 Identities=16% Similarity=0.220 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHh--cchhHHHHHHHHHHhhhhhhhHhhhhhhh
Q psy17080 156 LESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAI--SPWFELYLVVRFFLGFFCVSIVFSGFVLC 233 (565)
Q Consensus 156 ~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 233 (565)
..+.+.....++.+++.+++++++||+|+|+.+..+.++.++..+...+ .++.+.+++..++.|++.+...+...+++
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677888899999999999999999999888766654443333 35677788888999999999999999999
Q ss_pred cccccc-------chhHHHHHHhhhhhHHHHHHHHHHHHH
Q psy17080 234 MELVGG-------KWLTIMGVMYLFPVPVGYIAISGIAYY 266 (565)
Q Consensus 234 ~e~~~~-------~~r~~~~~~~~~~~~lG~~~~~~l~~~ 266 (565)
+|..+. +..|...+.......+|..+++.++..
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988852 223566777777777777777666544
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0002 Score=71.75 Aligned_cols=146 Identities=13% Similarity=0.134 Sum_probs=81.0
Q ss_pred chhhccccHHHHHHHHHHHHHHHHHHHhhhhhhhccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcC--ChH------
Q psy17080 346 QVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMG--RRR------ 417 (565)
Q Consensus 346 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g--rr~------ 417 (565)
.+.+++|-|..+.+.++....=+.....--...+.+-+.|..- -...+..+..++..++.++++-|+. +++
T Consensus 270 ~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlEkG~~K-E~LAl~~li~~P~qii~~~~~~Kws~g~~P~~~~~~ 348 (544)
T PF13000_consen 270 SLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLEKGLSK-EDLALLVLIDFPFQIILPYYIGKWSAGSPPLDVDNK 348 (544)
T ss_pred HHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHHcCCCH-HHhHHHHHHhhhHHHHHHHHhhhhhcCCCccccccc
Confidence 3456677788777766655544443333333333333333322 2233444667777777777776652 221
Q ss_pred -----------------------HHHHHHHHHHHHH----HHHhhcCC-ch-------HHHHHHHHHHHHHHHHHHHHHH
Q psy17080 418 -----------------------PLCLTTLGAGLAC----LMTLGFAP-GS-------FITISLAMVGKFAISSSNVIIP 462 (565)
Q Consensus 418 -----------------------~l~~~~~~~~~~~----~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~ 462 (565)
....++..-.++. .+.. ..| +. ..+++.-++..+.....+....
T Consensus 349 ~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~-~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~ 427 (544)
T PF13000_consen 349 ALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVY-FFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIM 427 (544)
T ss_pred cccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEE-eCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222111111 1112 223 11 1222233445566666677778
Q ss_pred HhcccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy17080 463 IYTAELFPTKMRNLGVGASSVPAGVALILIP 493 (565)
Q Consensus 463 ~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p 493 (565)
++-+.+..+..-|+.+.+.|+..++|+---.
T Consensus 428 AFharISDP~IGGTYMTLLNTvSNLGGtWP~ 458 (544)
T PF13000_consen 428 AFHARISDPAIGGTYMTLLNTVSNLGGTWPR 458 (544)
T ss_pred HHHhhccCcccchHHHHHHHHHHhcCCCchH
Confidence 8899999999999999999999999975443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.4e-05 Score=83.23 Aligned_cols=119 Identities=10% Similarity=-0.072 Sum_probs=101.2
Q ss_pred ccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhc----------chhHHHHHHH
Q psy17080 146 EWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAIS----------PWFELYLVVR 215 (565)
Q Consensus 146 ~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~----------~~~~~l~~~r 215 (565)
..++ +....|+......++.+++....+++.+|++.|+++.++.++.+++.+...+. ++.+.++..-
T Consensus 282 ~lG~---s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~ 358 (468)
T TIGR00788 282 CLPG---GPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS 358 (468)
T ss_pred cCCC---CcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence 4666 78889999999999999999999999999999999999999998887654311 3444556667
Q ss_pred HHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh
Q psy17080 216 FFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS 267 (565)
Q Consensus 216 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~ 267 (565)
++.+++.+..+....+++.+..|+++++...++.+...++|..+++.++..+
T Consensus 359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l 410 (468)
T TIGR00788 359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLL 410 (468)
T ss_pred HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999998899988888776654
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.1e-05 Score=77.57 Aligned_cols=141 Identities=16% Similarity=0.090 Sum_probs=106.1
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhc-chhHHHHH----HHHHHhhhhhhhHh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAIS-PWFELYLV----VRFFLGFFCVSIVF 227 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~-~~~~~l~~----~r~l~G~~~~~~~~ 227 (565)
+....+.+.++..++=++.-...+++..|+|.|++++++.+..++=..+.++. ++.+...+ ...+.|+..+..+.
T Consensus 241 ~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~ 320 (400)
T PF03825_consen 241 SGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHA 320 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34445655666666666777888999999999999999999999999888887 55444333 34579999999999
Q ss_pred hhhhhhccccccchhHHHHHHhhh-hhHHHHHHHHHHHHHhc---------chhHHHHHHHHHHHHHHHH-hhhccc
Q psy17080 228 SGFVLCMELVGGKWLTIMGVMYLF-PVPVGYIAISGIAYYSH---------NWRLLQWVITIPTIFFLTL-WWIMPE 293 (565)
Q Consensus 228 ~~~~~i~e~~~~~~r~~~~~~~~~-~~~lG~~~~~~l~~~~~---------~Wr~~~~~~~~~~~~~~~~-~~~~pe 293 (565)
....++.+..|++.|+++.+++.. ..++|..++..+++.+. +|...+.+.+...++..++ +.+.+|
T Consensus 321 a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 321 ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999998875 46788888888877653 3455566655554444444 334444
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00031 Score=68.58 Aligned_cols=133 Identities=16% Similarity=0.082 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCC--chHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17080 390 LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAP--GSFITISLAMVGKFAISSSNVIIPIYTAE 467 (565)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 467 (565)
+.....-.+.....+..+++.+|+|+|+-++.++.+.++++.++.-... +...+....++.+.+.+..-+....++..
T Consensus 52 liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~ 131 (422)
T COG0738 52 LIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTL 131 (422)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHH
Confidence 3334444556677888899999999999999999999999988752211 22444555677788888888888899999
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHH-------------------HhhhhhHHHHHHHHHHHHHHHHh
Q psy17080 468 LFPTKMRNLGVGASSVPAGVALILIPYL--WHMQ-------------------SINIHFPMGLLGVVGVLGGLSVL 522 (565)
Q Consensus 468 ~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~-------------------~~~~~~~~~~~~~~~~i~~~~~~ 522 (565)
+.|++..+.-+.+...++.+|.+++|.+ .... ......++...+...++..+...
T Consensus 132 lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~ 207 (422)
T COG0738 132 LGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLIL 207 (422)
T ss_pred hCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 9999887888899999999999999988 1111 11245567777666665555443
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.7e-05 Score=71.64 Aligned_cols=144 Identities=15% Similarity=0.017 Sum_probs=104.4
Q ss_pred ceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHH-HHHHHhcchhHHHHHHHHHHhh
Q psy17080 142 TIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVL-GVLVAISPWFELYLVVRFFLGF 220 (565)
Q Consensus 142 ~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~-~~~~~~~~~~~~l~~~r~l~G~ 220 (565)
-.++.|++ ++...+-+.+....-.++.+++.|.++|++||+...+.+..+..+. -....| +++.=.++..+.|+
T Consensus 290 fF~~rfGl---S~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGL 364 (459)
T KOG4686|consen 290 FFQKRFGL---SAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGL 364 (459)
T ss_pred HHHHhhCC---ChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhh
Confidence 35678999 7777788888888888999999999999999998877765554433 333333 23333466778888
Q ss_pred hhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhc------chhHHHHH-HHHHHHHHHHHhhh
Q psy17080 221 FCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSH------NWRLLQWV-ITIPTIFFLTLWWI 290 (565)
Q Consensus 221 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~------~Wr~~~~~-~~~~~~~~~~~~~~ 290 (565)
............++..+|.++.|.+.+..+...++|..+.+.+++.+. +|--.|.+ .+..++....+.+.
T Consensus 365 sysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~ 441 (459)
T KOG4686|consen 365 SYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFY 441 (459)
T ss_pred hHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 876666556677888888899999999999999999999999988863 24334433 44445555444443
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00036 Score=67.14 Aligned_cols=285 Identities=11% Similarity=-0.004 Sum_probs=145.6
Q ss_pred hhhhcccc-----cccchhhHHH-HHHHHHHHHHHHHhc-----------chhHHHHHHHHHHhhhhhhhHhhhhhhhcc
Q psy17080 173 FFSGLVSD-----KFGRKKALMG-SLVFQLVLGVLVAIS-----------PWFELYLVVRFFLGFFCVSIVFSGFVLCME 235 (565)
Q Consensus 173 ~~~G~l~D-----r~Grr~~l~~-~~~l~~~~~~~~~~~-----------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e 235 (565)
+++.++.| |+||||..+. +..+.+....+.+.- ++...+....++.-+..+.--.+.-.+...
T Consensus 81 llWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALt 160 (510)
T KOG3574|consen 81 LLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALT 160 (510)
T ss_pred HHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 46778888 9999986554 333333333333321 344445556677777777777888888888
Q ss_pred ccccchhHHHHHHhhhhhHHHHHHHHHHHHH----------hcchh---------HHHHHHHHHHHHHHHHhhhcccchh
Q psy17080 236 LVGGKWLTIMGVMYLFPVPVGYIAISGIAYY----------SHNWR---------LLQWVITIPTIFFLTLWWIMPESPR 296 (565)
Q Consensus 236 ~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----------~~~Wr---------~~~~~~~~~~~~~~~~~~~~pesp~ 296 (565)
+..+++.|-++....++...|.+++..+... +.+|. ...+..+...++...+..+..+++.
T Consensus 161 mLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~ 240 (510)
T KOG3574|consen 161 MLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKEND 240 (510)
T ss_pred hcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 8889999999988888888888887654322 12332 1223334444444444444333321
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhhh
Q psy17080 297 WLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYG 376 (565)
Q Consensus 297 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (565)
.- .++ +.+...++...-++++++-|..+....+....=......--.
T Consensus 241 ~~---------------------------~~~------e~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~ 287 (510)
T KOG3574|consen 241 ES---------------------------VDE------ELELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADAL 287 (510)
T ss_pred hh---------------------------hhh------hhhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhc
Confidence 00 000 000000011113456666666665555444332222222222
Q ss_pred hhhccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcC--ChHH--------HHHHHHHHHHHHHHH-hhcCC-c-h---
Q psy17080 377 LVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMG--RRRP--------LCLTTLGAGLACLMT-LGFAP-G-S--- 440 (565)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g--rr~~--------l~~~~~~~~~~~~~~-~~~~~-~-~--- 440 (565)
.++..-+.|...... .+..+..++..++.++..-|+. .|++ ..+.......+.... ..+.. . .
T Consensus 288 t~LkLle~Gv~ke~L-al~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~ 366 (510)
T KOG3574|consen 288 TSLKLLEHGVPKEEL-ALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPR 366 (510)
T ss_pred cchHHHHcCCChhHh-eeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceee
Confidence 222222333222111 1222455566666666555542 2221 111111111111111 10111 0 0
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHH
Q psy17080 441 ---FITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALIL 491 (565)
Q Consensus 441 ---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i 491 (565)
...+....+..+.....+-..+++.+.+.++...|+.+.+.|+..++|+--
T Consensus 367 ~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~w 420 (510)
T KOG3574|consen 367 GYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNW 420 (510)
T ss_pred chHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCc
Confidence 112222334455555556677788999999999999999999999988643
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00012 Score=62.84 Aligned_cols=107 Identities=9% Similarity=0.000 Sum_probs=88.4
Q ss_pred HHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhhcccccc
Q psy17080 160 AEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGG 239 (565)
Q Consensus 160 ~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~ 239 (565)
..++.+....+++++.+.+.+++|.|+.++++.+...+-.... +-++.+.++.+-.+.|++.+..+.....++.+...+
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~ 120 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE 120 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence 3445556667777788889999999999999999887554443 457788999999999999999999999999999999
Q ss_pred chhHHHHHHhhhhhHHHHHHHHHHHHHh
Q psy17080 240 KWLTIMGVMYLFPVPVGYIAISGIAYYS 267 (565)
Q Consensus 240 ~~r~~~~~~~~~~~~lG~~~~~~l~~~~ 267 (565)
+.|++..+++......+.++|..+....
T Consensus 121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 121 ETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888888888777666553
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.2e-05 Score=78.90 Aligned_cols=133 Identities=11% Similarity=-0.027 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhhccc
Q psy17080 157 ESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMEL 236 (565)
Q Consensus 157 ~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~ 236 (565)
-|........|-++.-++.+++..++|+-+++..++....+=.+..++.+|.|+.+..-+++|+..+..+..+.+|+...
T Consensus 408 fGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~v 487 (618)
T KOG3762|consen 408 FGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHV 487 (618)
T ss_pred eeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455556666777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHhhh-----hhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhh
Q psy17080 237 VGGKWLTIMGVMYLF-----PVPVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWI 290 (565)
Q Consensus 237 ~~~~~r~~~~~~~~~-----~~~lG~~~~~~l~~~~~~Wr~~~~~~~~~~~~~~~~~~~ 290 (565)
.||+.|..+.++.+. +-++|.++|+.+...+ +-|..|.+.++.+++.+++...
T Consensus 488 aPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f-g~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 488 APPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF-GARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred CCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee-hhHHHHHHHHHHHHHHHHHHHH
Confidence 999999888887653 4455555544443332 5677888888777776655443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.2e-05 Score=60.41 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=66.1
Q ss_pred CcccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHH
Q psy17080 138 SFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYL 212 (565)
Q Consensus 138 ~~~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~ 212 (565)
...|.+++|.++ +..+.|++.+..++||.+|++....+.++..+++.+..+++...+..+.+++.++.+.+.
T Consensus 13 plLP~M~~~~~l---s~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 13 PLLPLMQADGGL---SLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred hHhHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 347899999999 999999999999999999999999999998889999999999999999999998877653
|
Note that many members are hypothetical proteins. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0003 Score=71.11 Aligned_cols=113 Identities=18% Similarity=0.088 Sum_probs=89.8
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHhhhhhhhHhhhh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISP--WFELYLVVRFFLGFFCVSIVFSGF 230 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~ 230 (565)
++....+.......+.+++.+++..+++|+|+|+++..+.++.+++.++.-+.+ +.+.+++..++.+++.+...+...
T Consensus 270 ~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~w 349 (467)
T COG2211 270 PELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPW 349 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccH
Confidence 344556677777777788899999999999999999999999999999988875 788889999999999999999999
Q ss_pred hhhcccccc-------chhHHHHHHhhhhhHHHHHHHHHHHH
Q psy17080 231 VLCMELVGG-------KWLTIMGVMYLFPVPVGYIAISGIAY 265 (565)
Q Consensus 231 ~~i~e~~~~-------~~r~~~~~~~~~~~~lG~~~~~~l~~ 265 (565)
++++|..+- +.-|...+......=+|..++..+..
T Consensus 350 am~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g 391 (467)
T COG2211 350 AMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPG 391 (467)
T ss_pred HHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999888752 22266666666666666666554433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00062 Score=70.83 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHhhhhhhhHhhhhhhh
Q psy17080 156 LESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISP--WFELYLVVRFFLGFFCVSIVFSGFVLC 233 (565)
Q Consensus 156 ~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i 233 (565)
..+.+.+.+.++.+++.+++++++||+|+|+++..+..+.++..++..+.+ +...+++.-++.|++.+...+...+++
T Consensus 264 ~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ 343 (460)
T PRK11462 264 VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMM 343 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888999999999999999999987766555444444443332 233444555677888777777667777
Q ss_pred ccccc-------cchhHHHHHHhhhhhHHHHHHHHHHH
Q psy17080 234 MELVG-------GKWLTIMGVMYLFPVPVGYIAISGIA 264 (565)
Q Consensus 234 ~e~~~-------~~~r~~~~~~~~~~~~lG~~~~~~l~ 264 (565)
.|..+ .+.-|...+......-+|..+++.++
T Consensus 344 ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~ 381 (460)
T PRK11462 344 SDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALI 381 (460)
T ss_pred HHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665 22224545555555555555555443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00031 Score=67.59 Aligned_cols=145 Identities=12% Similarity=0.021 Sum_probs=110.5
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccc-cchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKF-GRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFL 218 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~-Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~ 218 (565)
.|.|..|-++ ++.+.|++.+...+..+..++....+++|. .+|+..+...+++.++.+.+.+.+.-..+.. -++.
T Consensus 231 LP~ili~~G~---sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~ll 306 (395)
T COG2807 231 LPAILIDRGL---SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLL 306 (395)
T ss_pred HHHHHHHcCC---CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHH
Confidence 7999999999 899999999999999999999999999964 5777777888888888888878765444444 4999
Q ss_pred hhhhhhhHhhhhhhhccccccchh-HHHHHHhhhhhHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHHHh
Q psy17080 219 GFFCVSIVFSGFVLCMELVGGKWL-TIMGVMYLFPVPVGYIAISGIAYYS----HNWRLLQWVITIPTIFFLTLW 288 (565)
Q Consensus 219 G~~~~~~~~~~~~~i~e~~~~~~r-~~~~~~~~~~~~lG~~~~~~l~~~~----~~Wr~~~~~~~~~~~~~~~~~ 288 (565)
|+|.|+.++.+.+++.+-.+..++ +...++.+....+=..++|.+.+++ .+|+...+......+...+.-
T Consensus 307 G~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 307 GLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFG 381 (395)
T ss_pred hCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988765544 4444554443333334467666664 489998887776666655543
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00035 Score=71.57 Aligned_cols=132 Identities=20% Similarity=0.258 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhh
Q psy17080 394 ISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKM 473 (565)
Q Consensus 394 ~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 473 (565)
..++..++.+...|.++||+|||..+....+...+..+.+. +.. ++..+ ..-...+....+....+++++....+.
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~-~~~--~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~ 145 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLL-FQG--YWFFL-LLGLSGGFSAIFSVGFAYVADISSEEE 145 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHH-HHH--HHHhh-hcccccchhhhhhhhhhheeeccchhH
Confidence 34667778888999999999999999888877766665555 222 22222 222334445567888899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHH-HhhcccCCC
Q psy17080 474 RNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLS-VLLLPDTTG 529 (565)
Q Consensus 474 r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~-~~~l~et~~ 529 (565)
|....|+.+.....+..++|.+ ......+...++.+..+..+++.+. .+++||+..
T Consensus 146 R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~ 204 (463)
T KOG2816|consen 146 RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQ 204 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccC
Confidence 9999999999888888899988 3345567777888888877777664 477899876
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00085 Score=62.60 Aligned_cols=92 Identities=12% Similarity=0.082 Sum_probs=66.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCc------hHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhh
Q psy17080 403 IVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPG------SFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNL 476 (565)
Q Consensus 403 ~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 476 (565)
.++.|.+.|++|.+.++.++.+...++...+.....+ .|...+..++.+.+.+...........+.||. .||+
T Consensus 53 G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~ 131 (250)
T PF06813_consen 53 GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGT 131 (250)
T ss_pred cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCc
Confidence 4778999999999999999999888888776633221 14444444555555544445555666688985 7999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy17080 477 GVGASSVPAGVALILIPYL 495 (565)
Q Consensus 477 ~~g~~~~~~~lg~~i~p~i 495 (565)
+.|+.-....+++.+...+
T Consensus 132 vvgilk~~~GLSaai~t~i 150 (250)
T PF06813_consen 132 VVGILKGFFGLSAAIFTQI 150 (250)
T ss_pred eehhhhHHHHhHHHHHHHH
Confidence 9999988888888877666
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00035 Score=70.87 Aligned_cols=140 Identities=16% Similarity=0.169 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHhhc--CCch--HHHHHHHHHHHHHHHHHHHHHHH
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLKMGR-RRPLCLTTLGAGLACLMTLGF--APGS--FITISLAMVGKFAISSSNVIIPI 463 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr~gr-r~~l~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 463 (565)
++......++..++.++.++...|.+. |+.++.+.+++.++.++...+ .++. +..++.-++.|++.+.. ...-.
T Consensus 74 G~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~ 152 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRA 152 (488)
T ss_pred hHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHH
Confidence 345555677888889999999999886 888889999999988887322 2332 45555556666665543 66778
Q ss_pred hcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH----HHH-----------hhhhhHHHHHHHHHHHHHHHH-hhcccC
Q psy17080 464 YTAELFPTKMRNLGVGASSVPAGVALILIPYLWH----MQS-----------INIHFPMGLLGVVGVLGGLSV-LLLPDT 527 (565)
Q Consensus 464 ~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~----~~~-----------~~~~~~~~~~~~~~~i~~~~~-~~l~et 527 (565)
|++...-.+.|.++++..+....+|.++||.+.. +.. ..+..+-++.+++.++..++. ++++|.
T Consensus 153 Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~ 232 (488)
T KOG2325|consen 153 YIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV 232 (488)
T ss_pred HHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence 8888777778888888887777777777777611 111 124567788888888777654 566665
Q ss_pred CC
Q psy17080 528 TG 529 (565)
Q Consensus 528 ~~ 529 (565)
..
T Consensus 233 ~~ 234 (488)
T KOG2325|consen 233 YR 234 (488)
T ss_pred cc
Confidence 44
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.01 Score=57.67 Aligned_cols=138 Identities=14% Similarity=0.082 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhc-c--
Q psy17080 390 LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYT-A-- 466 (565)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 466 (565)
..+....+...+...+.|.+.||+|||+..+...++.+++|+.-. .++.+..++.-+++|++.+..++..-++. .
T Consensus 73 ~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~--~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh 150 (354)
T PF05631_consen 73 ILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH--SSNYPVLLLGRVLGGIATSLLFSAFESWMVHEH 150 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333445566777888999999999999988888888887543 45556667777788888877777654432 2
Q ss_pred --cccchhhhhhHHHHHH-HHHHHHHHHHHHH--HHHH--HhhhhhHHHHHHHHHHHHHHHHh-hcccCCC
Q psy17080 467 --ELFPTKMRNLGVGASS-VPAGVALILIPYL--WHMQ--SINIHFPMGLLGVVGVLGGLSVL-LLPDTTG 529 (565)
Q Consensus 467 --e~~p~~~r~~~~g~~~-~~~~lg~~i~p~i--~~~~--~~~~~~~~~~~~~~~~i~~~~~~-~l~et~~ 529 (565)
.-+|.+..+..++... ..+.+-.+++..+ ...+ ..+...||.....+.++++++.. ..+|..+
T Consensus 151 ~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 151 NKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYG 221 (354)
T ss_pred HHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCC
Confidence 3456666566555444 2333334444444 1223 33557889888888887777653 4566544
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.034 Score=57.53 Aligned_cols=240 Identities=14% Similarity=0.078 Sum_probs=125.7
Q ss_pred hHHHHHHHHH-HHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhc---------chh------------------
Q psy17080 157 ESLAEMVFLL-GVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAIS---------PWF------------------ 208 (565)
Q Consensus 157 ~~l~~s~~~l-g~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~---------~~~------------------ 208 (565)
+..+-....+ +..+...+..++++|++|.+++-+....+.....+.++. ++.
T Consensus 60 I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~ 139 (491)
T PF03219_consen 60 IPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIA 139 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHH
Confidence 3444443333 344556678999999999998887776666555555542 111
Q ss_pred ----HHHHHHHHHHhhhhhhhHh-hhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhcc------------hh
Q psy17080 209 ----ELYLVVRFFLGFFCVSIVF-SGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSHN------------WR 271 (565)
Q Consensus 209 ----~~l~~~r~l~G~~~~~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~~------------Wr 271 (565)
|.+.+.-++.-+-...... .-..+.+|.++.++-.+..+++..+.++|.++++.+...+.. |.
T Consensus 140 ~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
T PF03219_consen 140 MFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWE 219 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHh
Confidence 1111112222222122222 346778999999999999999999999999998876655432 44
Q ss_pred HHHH-HHHHH---HHHHHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccch
Q psy17080 272 LLQW-VITIP---TIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQV 347 (565)
Q Consensus 272 ~~~~-~~~~~---~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (565)
.... +.++. +++.......+.+. -. .++.........++++.+..-..++
T Consensus 220 ~~l~~l~~~v~~~g~~i~~~~~~~~~~-------vl-------------------~~~~~~~~~~~~kk~k~k~s~~es~ 273 (491)
T PF03219_consen 220 LSLNSLMGIVLILGIVIILLYRYMNKN-------VL-------------------TDPRFYPSAKKKKKKKPKMSLKESF 273 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------cc-------------------CccccchhhhcccccCCCccHHHHH
Confidence 3222 12121 22222222222110 00 0000000000001111111223456
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHhhhhhhhccCcCCC--cH-----HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHH
Q psy17080 348 MDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIGG--DV-----YLNTIISGIVEFPAIVISIFILLKMGRRRPLC 420 (565)
Q Consensus 348 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~ 420 (565)
+.++|+|.++...+..........++.+...-.....-. +. +......++..++..++++.+.+|+|-+....
T Consensus 274 k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~Al 353 (491)
T PF03219_consen 274 KLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAAL 353 (491)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 778899988877777666666666555433222211111 11 12233456666666788889999999877655
Q ss_pred HH
Q psy17080 421 LT 422 (565)
Q Consensus 421 ~~ 422 (565)
+.
T Consensus 354 it 355 (491)
T PF03219_consen 354 IT 355 (491)
T ss_pred Hh
Confidence 54
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.15 Score=51.71 Aligned_cols=254 Identities=13% Similarity=0.075 Sum_probs=139.9
Q ss_pred eeeccccccCcchhhHHHHHHHHH-HHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhc---------ch-----
Q psy17080 143 IISEWDLVCSNSSLESLAEMVFLL-GVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAIS---------PW----- 207 (565)
Q Consensus 143 i~~~~~l~c~~~~~~~l~~s~~~l-g~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~---------~~----- 207 (565)
+.+.+-++-..+..++++-+..-+ +.++..++.+++.+++-|.+++-..+..+....+++++. ++
T Consensus 49 lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~ 128 (509)
T COG3202 49 LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSR 128 (509)
T ss_pred hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHH
Confidence 333344432355666777777777 777888999999999999999888777777766666653 11
Q ss_pred -----h-------------HHHHHHHHHHhhhhhhhHh-hhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhc
Q psy17080 208 -----F-------------ELYLVVRFFLGFFCVSIVF-SGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSH 268 (565)
Q Consensus 208 -----~-------------~~l~~~r~l~G~~~~~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~ 268 (565)
. |...+.-.+.=+-...... .-.....|.+..++-.|..++++++.+++.++++.+...+.
T Consensus 129 ~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~ 208 (509)
T COG3202 129 DLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLS 208 (509)
T ss_pred HHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 1122222222221112221 23456788888888899999999999999999888887765
Q ss_pred chhH-------------HHHHHHHHHHHHHHHhhhc----ccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHH
Q psy17080 269 NWRL-------------LQWVITIPTIFFLTLWWIM----PESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLK 331 (565)
Q Consensus 269 ~Wr~-------------~~~~~~~~~~~~~~~~~~~----pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 331 (565)
.||. .+.+.++.+++.+.+.+++ ++.|+....+.+
T Consensus 209 k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~---------------------------- 260 (509)
T COG3202 209 KHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKK---------------------------- 260 (509)
T ss_pred hchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhc----------------------------
Confidence 5443 2333333334444443332 222322100000
Q ss_pred HHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhhhhhhccCcCC--C---cHH--HHHHHHHHH-HHHHH
Q psy17080 332 ESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIG--G---DVY--LNTIISGIV-EFPAI 403 (565)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~--~~~~~~~~~-~~~~~ 403 (565)
+.+++..+..-..+++.+.|+|.++...+...+...+..+....---...... . +.+ ....+.++. .+...
T Consensus 261 -kk~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~ 339 (509)
T COG3202 261 -KKKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFL 339 (509)
T ss_pred -ccccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001111112234566778888877777666666655554432211111110 1 111 123344554 45566
Q ss_pred HHHHHHHhhcCChHHHHHHHHH
Q psy17080 404 VISIFILLKMGRRRPLCLTTLG 425 (565)
Q Consensus 404 ~~~~~l~dr~grr~~l~~~~~~ 425 (565)
.+++-+++|.|-....++.-++
T Consensus 340 ~~~s~~ir~~GW~~~AlitPiv 361 (509)
T COG3202 340 FPGSNLIRRVGWFTGALITPLV 361 (509)
T ss_pred hhhHHHHHHhhHHHHHHHHHHH
Confidence 7788888888876655444333
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.024 Score=59.94 Aligned_cols=144 Identities=10% Similarity=0.056 Sum_probs=102.3
Q ss_pred ceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhccccc-ccchhhHHHHHHHHHHHHHHHHhcch-------------
Q psy17080 142 TIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDK-FGRKKALMGSLVFQLVLGVLVAISPW------------- 207 (565)
Q Consensus 142 ~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr-~Grr~~l~~~~~l~~~~~~~~~~~~~------------- 207 (565)
-+..+++. ....+.-..+.+.-......+.+++++|- +||-+++.++.++..++.++..++..
T Consensus 63 ylt~~~~~---~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~ 139 (571)
T KOG1237|consen 63 YLTLELHA---SGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKP 139 (571)
T ss_pred HHHHHhcc---chHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCC
Confidence 34455555 44555666777777777888999999996 69999999998888887655444311
Q ss_pred ------------hHHHHHHHHHHhhhhhhhHhhhhhhhccccc---cchh---HHHHHHhhhhhHHHHHHHHHHHHHh--
Q psy17080 208 ------------FELYLVVRFFLGFFCVSIVFSGFVLCMELVG---GKWL---TIMGVMYLFPVPVGYIAISGIAYYS-- 267 (565)
Q Consensus 208 ------------~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~---~~~r---~~~~~~~~~~~~lG~~~~~~l~~~~-- 267 (565)
...++.+.-+..+|.|+.-+...++-+|-++ ++++ ...+.++.....+|.+++-.+..+.
T Consensus 140 ~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~ 219 (571)
T KOG1237|consen 140 GGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQD 219 (571)
T ss_pred CCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhh
Confidence 1256677788888999999999999999988 3322 3556777778888888876555554
Q ss_pred -cchhHHHHHHHHHHHHHHHHh
Q psy17080 268 -HNWRLLQWVITIPTIFFLTLW 288 (565)
Q Consensus 268 -~~Wr~~~~~~~~~~~~~~~~~ 288 (565)
.+|.+.|.+..+..++.++++
T Consensus 220 ~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 220 NVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred cccceeeccHHHHHHHHHHHHH
Confidence 489988887666555444443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0043 Score=61.24 Aligned_cols=119 Identities=11% Similarity=0.053 Sum_probs=97.9
Q ss_pred eccccccCcchhhHHHHHHHHHHHhhhhhhhhcccc-cccchhhHHHHHHHHHHHHHHHH---hcchhHHHHHHHHHHhh
Q psy17080 145 SEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSD-KFGRKKALMGSLVFQLVLGVLVA---ISPWFELYLVVRFFLGF 220 (565)
Q Consensus 145 ~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~D-r~Grr~~l~~~~~l~~~~~~~~~---~~~~~~~l~~~r~l~G~ 220 (565)
+-|++ +..+..-++..+..|..+|-...|++.. |.++|+...+++.+..++..+.. ...+.+.+...-++.|+
T Consensus 237 ~Vfgm---sv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~ 313 (403)
T PF03209_consen 237 EVFGM---SVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGL 313 (403)
T ss_pred HHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 44778 6666777889999999999999998887 67888888888877777666544 44678899999999999
Q ss_pred hhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHH
Q psy17080 221 FCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYY 266 (565)
Q Consensus 221 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~ 266 (565)
+.|.......+.+.+...+++-|..++.+.....++.-++..++..
T Consensus 314 g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~ 359 (403)
T PF03209_consen 314 GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGA 359 (403)
T ss_pred hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988777777666666554
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.023 Score=56.33 Aligned_cols=59 Identities=12% Similarity=-0.054 Sum_probs=45.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 437 APGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
..+++..+....+.++..|-..+....++.+..|++.+..+-.+...+-..|-+.|..+
T Consensus 340 ~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 340 FESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred ecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 44557778888888898888888899999999999887777666666666665555544
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0065 Score=61.33 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHHHHHHHhc---ch------hHHHHHHHHHHhhhhhhhHhhhhhhhccccccc---hhHHHHHHhhhhh
Q psy17080 186 KALMGSLVFQLVLGVLVAIS---PW------FELYLVVRFFLGFFCVSIVFSGFVLCMELVGGK---WLTIMGVMYLFPV 253 (565)
Q Consensus 186 ~~l~~~~~l~~~~~~~~~~~---~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~---~r~~~~~~~~~~~ 253 (565)
|+++++.++..+|.++..++ .+ .+.++++.++.++|.|+.-+...++++|.++++ +|.....++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56778888888888884433 22 267899999999999999999999999999865 4566778888999
Q ss_pred HHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhh
Q psy17080 254 PVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWW 289 (565)
Q Consensus 254 ~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~ 289 (565)
++|.+++..+..++ .+|.+.|.+.++..++.++.++
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 99999987766554 4888889888777666655543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.03 Score=55.83 Aligned_cols=107 Identities=21% Similarity=0.203 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCC----chHHHHHHHHHHHHHHHHHHHHHHH
Q psy17080 388 VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAP----GSFITISLAMVGKFAISSSNVIIPI 463 (565)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (565)
..+...+..++.++..+.+.|+.||+|-|..+.++..+.+++..+=.+-.. +.... -+...+....+...+....
T Consensus 81 ~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~-~l~~~Gq~iaa~Aq~Fim~ 159 (480)
T KOG2563|consen 81 ADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRR-PLTHTGQSIAAAAQPFILG 159 (480)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchh-hhhHHhHHHHHHhhhHhhc
Confidence 345566777888999999999999999999999999988888776542221 21111 2223333333333333332
Q ss_pred ----hcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 464 ----YTAELFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 464 ----~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
...--||+++|+++..+..+.+.+|.+++-++
T Consensus 160 lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll 195 (480)
T KOG2563|consen 160 LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL 195 (480)
T ss_pred cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence 33445899999999998888877777766554
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.016 Score=49.85 Aligned_cols=104 Identities=14% Similarity=0.057 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy17080 390 LNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELF 469 (565)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 469 (565)
....+.-....++.++.+.+.+++|.|+.++++.+...+-.... +.++.+..+....+.|++.+..+...-.++.+..
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~--~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s 118 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF--FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS 118 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence 33444445566777888999999999999999888776544443 4566677777888899999999999889999998
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 470 PTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 470 p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
.++.+++-.|+...+...+.++|.++
T Consensus 119 ~~~~~~~~~~ifw~i~~~s~i~G~~~ 144 (156)
T PF05978_consen 119 TEETIGRNTGIFWAIFQSSLIFGNLF 144 (156)
T ss_pred CHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 88899999998888888777777766
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.042 Score=54.97 Aligned_cols=126 Identities=12% Similarity=0.059 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHH
Q psy17080 402 AIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGAS 481 (565)
Q Consensus 402 ~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~ 481 (565)
..+....+.|.++.|++++...+...+...++. +..+...+-+.-++.|...+. -...++|+--..|++.-.++.+.+
T Consensus 57 ~l~~vflltd~l~Ykpviil~~~~~i~t~~lll-~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~ 134 (412)
T PF01770_consen 57 FLLPVFLLTDYLRYKPVIILQALSYIITWLLLL-FGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYT 134 (412)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHH
Confidence 445566788999999999988877776666665 666655555555666555544 345557777777887777777777
Q ss_pred HHHHHHHHHHHHHH----HHHHHhhhhhHHHHHHHHHHHHHHHHhhcccCCC
Q psy17080 482 SVPAGVALILIPYL----WHMQSINIHFPMGLLGVVGVLGGLSVLLLPDTTG 529 (565)
Q Consensus 482 ~~~~~lg~~i~p~i----~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~et~~ 529 (565)
....-+|.+++..+ ......++.....+......++.++.+++|..++
T Consensus 135 raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 135 RAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 66655555555444 3334444554445555555566667788888765
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00084 Score=50.06 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=45.4
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQ 195 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~ 195 (565)
.+-..++.++ +..++|++.++..+...++++++|.++||+||++.++....+.
T Consensus 23 l~~~~~~~Gl---~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 23 LPLYLKQLGL---SPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred hhHhhhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 4555667788 8999999999999999999999999999999998877765543
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0093 Score=55.02 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=35.1
Q ss_pred chhHHHHHHhhhhhHHHHHHHHHH--HH------HhcchhHHHHHHHHHHHHHHHHhhhc
Q psy17080 240 KWLTIMGVMYLFPVPVGYIAISGI--AY------YSHNWRLLQWVITIPTIFFLTLWWIM 291 (565)
Q Consensus 240 ~~r~~~~~~~~~~~~lG~~~~~~l--~~------~~~~Wr~~~~~~~~~~~~~~~~~~~~ 291 (565)
|+|+..+.+...++++|.++.... .. ...+|++++.+.+++.++-++++..+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777788888888874332 11 12479999998888776666655443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.22 Score=51.41 Aligned_cols=95 Identities=8% Similarity=-0.127 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhc-CCc-----------------------------hHHHHHHHHHH
Q psy17080 401 PAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF-APG-----------------------------SFITISLAMVG 450 (565)
Q Consensus 401 ~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~-~~~-----------------------------~~~~~~~~~~~ 450 (565)
+..++-+++++|++|++.+.+........++++... .|. .|...++.+..
T Consensus 59 ~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~ 138 (472)
T TIGR00769 59 IFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMA 138 (472)
T ss_pred HHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHH
Confidence 336677899999999988766554444444333311 110 12222333334
Q ss_pred HHHHHHHHH-HHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 451 KFAISSSNV-IIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 451 ~~~~~~~~~-~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
........+ ..+.+++|++..++..+-.++....+++|.+++|.+
T Consensus 139 elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~ 184 (472)
T TIGR00769 139 ELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRT 184 (472)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455 778999999999999999999999999999999987
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.00046 Score=67.52 Aligned_cols=104 Identities=13% Similarity=0.035 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHH--HHh----------hcCCchHHHHHHHHHHHHHHHHH
Q psy17080 391 NTIISGIVEFPAIVISIFILLKM-GRRRPLCLTTLGAGLACL--MTL----------GFAPGSFITISLAMVGKFAISSS 457 (565)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~dr~-grr~~l~~~~~~~~~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 457 (565)
...+..++.++|+.+..+..-+. .+|++. +..+.-.+..- ++. .+.++++..++.+++.++..|..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 34567788889998887643221 233332 22222111111 111 12334566777788888999988
Q ss_pred HHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 458 NVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 458 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
.+....+..+..+++.|..+-.+++++-.+|-.+|..+
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp -HHHH---------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999998888888777777766766666554
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.064 Score=57.90 Aligned_cols=125 Identities=7% Similarity=0.102 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHhhcC-Cc------hHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy17080 399 EFPAIVISIFILLK-MGRRRPLCLTTLGAGLACLMTLGFA-PG------SFITISLAMVGKFAISSSNVIIPIYTAELFP 470 (565)
Q Consensus 399 ~~~~~~~~~~l~dr-~grr~~l~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 470 (565)
.-+..++++++.|+ +||++.+.++.++..++..++.+.. +. ....++.+.+..+|.+..-+...+...+.++
T Consensus 36 ~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~ 115 (654)
T TIGR00926 36 CYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE 115 (654)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC
Confidence 34456777888886 7999999999888888877765211 11 1223444556667777777888888888887
Q ss_pred hh---hhhhHHHHHHHHHHHHHHHHHHHH-HHH-Hh-------hhhhHHHHHHHHHHHHHHHHhh
Q psy17080 471 TK---MRNLGVGASSVPAGVALILIPYLW-HMQ-SI-------NIHFPMGLLGVVGVLGGLSVLL 523 (565)
Q Consensus 471 ~~---~r~~~~g~~~~~~~lg~~i~p~i~-~~~-~~-------~~~~~~~~~~~~~~i~~~~~~~ 523 (565)
.+ .|...+.+.....++|+++++.+. ... .. ++...|.+.+++.+++.++...
T Consensus 116 ~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 116 ERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 54 366677778888899998887772 222 21 3666777777777766655443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.11 Score=53.59 Aligned_cols=144 Identities=15% Similarity=0.114 Sum_probs=91.0
Q ss_pred cCcCCCcHHHHHHHHHHHHHH--HHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHhhcCCc----hHHHHHHHHH
Q psy17080 381 LSNIGGDVYLNTIISGIVEFP--AIVISIFILLKM-----GRRRPLCLTTLGAGLACLMTLGFAPG----SFITISLAMV 449 (565)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~dr~-----grr~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 449 (565)
..+++.+......+.++..++ ..++.|.++|-+ +||.-++++.++..++.+.+. ..+. .....+++++
T Consensus 17 ~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~-~~~~~~~s~~~~~~~l~l 95 (433)
T PF03092_consen 17 KDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLA-LLPASESSAAIAVVLLFL 95 (433)
T ss_pred HHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHH-hcccccchhhhHHHHHHH
Confidence 344566666556666666554 467889999976 355556666666655555555 3332 2344445555
Q ss_pred HHHHHHHHHHHHHHhccccc---chhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhc
Q psy17080 450 GKFAISSSNVIIPIYTAELF---PTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLL 524 (565)
Q Consensus 450 ~~~~~~~~~~~~~~~~~e~~---p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 524 (565)
..++....-...-+...|.. |.+ |+...+.......+|++++..+ ...+..++...|.+.+.+..+..+..+++
T Consensus 96 a~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~ 174 (433)
T PF03092_consen 96 ASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFL 174 (433)
T ss_pred HHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHh
Confidence 66666666666667777765 434 6777788888888888888766 33455667777888777777666555444
Q ss_pred cc
Q psy17080 525 PD 526 (565)
Q Consensus 525 ~e 526 (565)
.|
T Consensus 175 ~~ 176 (433)
T PF03092_consen 175 LE 176 (433)
T ss_pred hh
Confidence 33
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.5 Score=45.35 Aligned_cols=106 Identities=21% Similarity=0.176 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCc--hHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPG--SFITISLAMVGKFAISSSNVIIPIYTA 466 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (565)
........+....+.++.|.+.||.|||+.+..+.....++.++.. +... .+...+.....+++.+...+....+..
T Consensus 42 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 120 (338)
T COG0477 42 GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLA-LAPNVGLALLLILRLLQGLGGGGLLPVASALLS 120 (338)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHH-hCccchHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444445555666668999999999999777777654344433333 3333 344444444467777777888899999
Q ss_pred cccch-hhhhhHHHHHHH-HHHHHHHHHHHH
Q psy17080 467 ELFPT-KMRNLGVGASSV-PAGVALILIPYL 495 (565)
Q Consensus 467 e~~p~-~~r~~~~g~~~~-~~~lg~~i~p~i 495 (565)
|..|. ..|+...+.... ...+|..++|.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T COG0477 121 EWFPEATERGLAVGLVTLGAGALGLALGPLL 151 (338)
T ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 667888888777 566777777755
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.088 Score=52.67 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=82.0
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHH--HH---HHHHHHhcchhHHHHHHHHHHhhhhhhhHhh
Q psy17080 154 SSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQ--LV---LGVLVAISPWFELYLVVRFFLGFFCVSIVFS 228 (565)
Q Consensus 154 ~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~--~~---~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 228 (565)
..+..+...+|.+|..++.--...+ |+ |++.+.+.+-. .+ .....-+.++.|..++.-+..|+..|..++-
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVN 355 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVN 355 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 4556677888888877775433222 34 33333332222 11 2222334689999999999999999999999
Q ss_pred hhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhc
Q psy17080 229 GFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSH 268 (565)
Q Consensus 229 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~ 268 (565)
.+..+.|-.++++|...++...++-++|.++++.++..+.
T Consensus 356 tF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 356 TFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998887654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.33 Score=51.10 Aligned_cols=111 Identities=11% Similarity=0.020 Sum_probs=57.6
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHH-HHHHHH-HHHHHH----Hhcchh-HHHHHHHHHHhhhhhhh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMG-SLVFQL-VLGVLV----AISPWF-ELYLVVRFFLGFFCVSI 225 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~-~~~l~~-~~~~~~----~~~~~~-~~l~~~r~l~G~~~~~~ 225 (565)
+....+++.+++++|..+|+.++|++.++.-|+...+- ...+.+ ++..+. ++...+ ..++..-++.|+..|+.
T Consensus 48 s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 127 (521)
T PRK03612 48 SVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGME 127 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567899999999999999999988744333322111 111111 111111 111111 12334456677888888
Q ss_pred HhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHH
Q psy17080 226 VFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIA 264 (565)
Q Consensus 226 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~ 264 (565)
.|....+..+... ++-+...+-......+|.++|+++.
T Consensus 128 ~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~ 165 (521)
T PRK03612 128 IPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAF 165 (521)
T ss_pred HHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHH
Confidence 8887766655432 1122333444444444554444443
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.46 Score=48.57 Aligned_cols=106 Identities=23% Similarity=0.305 Sum_probs=78.9
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhccccc---ccchhhHHHHHHHHHHHHHHHHhc------------------chhHHHHH
Q psy17080 155 SLESLAEMVFLLGVAFGGFFSGLVSDK---FGRKKALMGSLVFQLVLGVLVAIS------------------PWFELYLV 213 (565)
Q Consensus 155 ~~~~l~~s~~~lg~~ig~~~~G~l~Dr---~Grr~~l~~~~~l~~~~~~~~~~~------------------~~~~~l~~ 213 (565)
...++..-...+|..+++.+.+.+++| +||++.+.++.++..++.++.-.+ +++...++
T Consensus 279 ~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~i 358 (461)
T KOG3098|consen 279 YLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALI 358 (461)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHH
Confidence 344444445556666677777777754 899999999999888888776553 24557777
Q ss_pred HHHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHH
Q psy17080 214 VRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAIS 261 (565)
Q Consensus 214 ~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~ 261 (565)
.-++.|++.+......+.++.... +++|..+.++.-.-..++..++.
T Consensus 359 i~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~ 405 (461)
T KOG3098|consen 359 IGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAF 405 (461)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999 67777777777766666665543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.21 Score=37.19 Aligned_cols=59 Identities=24% Similarity=0.228 Sum_probs=39.1
Q ss_pred HHHHHHhhhhhhhccCcCCCcHHHHH---HHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Q psy17080 367 WFSVYLVYYGLVLNLSNIGGDVYLNT---IISGIVEFPAIVISIFILLKMGRRRPLCLTTLG 425 (565)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~ 425 (565)
+......+-..+.+..+.+.+..... .+.-+..+++.++.|.++||.++++.......+
T Consensus 13 f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 13 FAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 33344444345556666676655444 444567788999999999999998877665543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=2.6 Score=44.46 Aligned_cols=48 Identities=4% Similarity=-0.083 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 447 AMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
.++.++..|..+|...-+..+.... .-+...|-......+|+++|.++
T Consensus 117 ~~~~~~l~G~~~Pl~~~~~~~~~~~-~~g~~~g~ly~~ntlGa~~G~l~ 164 (521)
T PRK03612 117 VLLIGLLIGMEIPLLMRILQRIRDQ-HLGHNVATVLAADYLGALVGGLA 164 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-chhhhhhhhHhHHhHHHHHHHHH
Confidence 3445667777777766555443221 12334454455555555555444
|
|
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.17 Score=47.90 Aligned_cols=131 Identities=9% Similarity=0.012 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhhcccc
Q psy17080 158 SLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELV 237 (565)
Q Consensus 158 ~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~ 237 (565)
|.+.-+-.+-..+--+.+..+.||+---.=+.+..++.+.+.++.+++++.++-+++-.+..++.|.....-..+-+.+
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y- 143 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRY- 143 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccC-
Confidence 3334444455555556666677875332223455667788888999999999988888888888665544433333222
Q ss_pred ccchhHHHHHHhhhhhHHHHHHHHHHHHHhc-----chhHHHHHHH-HHHHHHHHHhhhccc
Q psy17080 238 GGKWLTIMGVMYLFPVPVGYIAISGIAYYSH-----NWRLLQWVIT-IPTIFFLTLWWIMPE 293 (565)
Q Consensus 238 ~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~-----~Wr~~~~~~~-~~~~~~~~~~~~~pe 293 (565)
+ ....+.++.|.+.+.++|+.--..+. +-|...++.. +|++.+...++.+++
T Consensus 144 ~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~ 201 (409)
T KOG3880|consen 144 P----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKS 201 (409)
T ss_pred C----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCC
Confidence 1 22223344444444444433222223 3455566544 444444444444443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.0073 Score=63.64 Aligned_cols=137 Identities=13% Similarity=0.073 Sum_probs=2.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhc--C----------------------C---------
Q psy17080 392 TIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF--A----------------------P--------- 438 (565)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~--~----------------------~--------- 438 (565)
....-++.++..++..++..|..|-+.+.++.++++++++++.+- . .
T Consensus 44 ~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 123 (539)
T PF03137_consen 44 SSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQAS 123 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccccccccccccccccc
Confidence 334445556666667777788778888888999999888876621 0 0
Q ss_pred ----------ch------HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH------H
Q psy17080 439 ----------GS------FITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL------W 496 (565)
Q Consensus 439 ----------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i------~ 496 (565)
.. ..+++..++.|++....+++..+|+-|..+++.-+...|+...+..+|.++|=.+ .
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~ 203 (539)
T PF03137_consen 124 SDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRI 203 (539)
T ss_dssp ----------------------------SSS-------------------------------------------------
T ss_pred CccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhc
Confidence 00 1233344566777788889999999999999999999999888877776655333 1
Q ss_pred --HHHH----------------hhhhhHHHHHHHHHHHHHHHHhhcccCC
Q psy17080 497 --HMQS----------------INIHFPMGLLGVVGVLGGLSVLLLPDTT 528 (565)
Q Consensus 497 --~~~~----------------~~~~~~~~~~~~~~~i~~~~~~~l~et~ 528 (565)
.... ..|+..|++.+++.++.++..+..|+..
T Consensus 204 yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~l 253 (539)
T PF03137_consen 204 YVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKL 253 (539)
T ss_dssp --------------------------------------------------
T ss_pred eeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence 0100 1366778888888888887777776643
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.58 Score=47.21 Aligned_cols=107 Identities=11% Similarity=0.064 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHH--hhcCCch------HHHHHHHHHHHHHHHHHHHHHHHhcccccchh---hhhhHHHHHHHHH
Q psy17080 417 RPLCLTTLGAGLACLMT--LGFAPGS------FITISLAMVGKFAISSSNVIIPIYTAELFPTK---MRNLGVGASSVPA 485 (565)
Q Consensus 417 ~~l~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~ 485 (565)
+.+.++.++..++.+++ ....+.. ....+.+.+..+|.|..-+....+..|.++++ .|...+.......
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 34556666666666652 2122222 45566666778888888899999999999876 3666777778888
Q ss_pred HHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q psy17080 486 GVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLL 523 (565)
Q Consensus 486 ~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 523 (565)
++|..+++.+ ..-++.++...|.+.++..+++.+..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 9999998877 3345678888898888888877665544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.4 Score=51.54 Aligned_cols=133 Identities=13% Similarity=0.062 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhc-------------------CC-------------------
Q psy17080 397 IVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF-------------------AP------------------- 438 (565)
Q Consensus 397 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~-------------------~~------------------- 438 (565)
++..+......+...|..|-+.+.++.++++++.++.++- .+
T Consensus 143 ig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 222 (735)
T KOG3626|consen 143 IGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPS 222 (735)
T ss_pred cchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCC
Confidence 3444555556677778888888888888888888877621 00
Q ss_pred --------c-h---H-HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH------HH
Q psy17080 439 --------G-S---F-ITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWH------MQ 499 (565)
Q Consensus 439 --------~-~---~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~------~~ 499 (565)
. . + .+++..++.|+|....++...+|+-|...++.-...+|+...+..+|.++|=++.. .+
T Consensus 223 ~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD 302 (735)
T KOG3626|consen 223 PENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVD 302 (735)
T ss_pred CCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeec
Confidence 0 0 1 12223344566666667888899999999998899999999888888777655511 11
Q ss_pred H---------------hhhhhHHHHHHHHHHHHHHHHhhcccCCC
Q psy17080 500 S---------------INIHFPMGLLGVVGVLGGLSVLLLPDTTG 529 (565)
Q Consensus 500 ~---------------~~~~~~~~~~~~~~~i~~~~~~~l~et~~ 529 (565)
- ..|+..|++.+.+.++.++..+++|++..
T Consensus 303 ~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 303 FGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred cccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence 1 23677899999999999999999988765
|
|
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.98 Score=42.97 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=80.4
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhcccccccchh------hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhh
Q psy17080 155 SLESLAEMVFLLGVAFGGFFSGLVSDKFGRKK------ALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFS 228 (565)
Q Consensus 155 ~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~------~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 228 (565)
.|.-|.+..|.+|..+..--. |+=|-+ ++..-.+++.+......+.++++..++.-+.-|+-.|..++-
T Consensus 288 sqYRwyqvlYQlGVFiSRSS~-----~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVN 362 (409)
T KOG3880|consen 288 SQYRWYQVLYQLGVFISRSSI-----NLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVN 362 (409)
T ss_pred hcchhhheeeeeeEEEEeccc-----eEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHH
Confidence 345566777766655443222 222222 112223344445556667899999999999999998999998
Q ss_pred hhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhcch
Q psy17080 229 GFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSHNW 270 (565)
Q Consensus 229 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~~W 270 (565)
.+--+.+-.++++|-.+++....+-++|..+++.++..+.+|
T Consensus 363 Tf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh~~ 404 (409)
T KOG3880|consen 363 TFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLHNW 404 (409)
T ss_pred HHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccchhh
Confidence 888888888999999999999999999999999888776655
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.45 Score=47.82 Aligned_cols=98 Identities=15% Similarity=0.034 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHhh----cCChHHHHHHHH-HHHHHHHHHhhcCCc--------h---------HHHHHHHHHHHHHH
Q psy17080 397 IVEFPAIVISIFILLK----MGRRRPLCLTTL-GAGLACLMTLGFAPG--------S---------FITISLAMVGKFAI 454 (565)
Q Consensus 397 ~~~~~~~~~~~~l~dr----~grr~~l~~~~~-~~~~~~~~~~~~~~~--------~---------~~~~~~~~~~~~~~ 454 (565)
+..++..++.|..+|| +|||+..+.... ...++++++. +..+ . ...++...+.-+..
T Consensus 78 i~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig-~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~ 156 (498)
T KOG0637|consen 78 LSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIG-YAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVAN 156 (498)
T ss_pred cccceecccccccccccccccccccchHHHhhHHHHHHHhhhh-hHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhh
Confidence 3445566777888885 788877665544 4444554443 3211 1 11222223334444
Q ss_pred HHHHHHHHHhcccccchhhhhh-HHHHHHHHHHHHHHHHHHH
Q psy17080 455 SSSNVIIPIYTAELFPTKMRNL-GVGASSVPAGVALILIPYL 495 (565)
Q Consensus 455 ~~~~~~~~~~~~e~~p~~~r~~-~~g~~~~~~~lg~~i~p~i 495 (565)
.......-++..++...+.+.+ +.+....+..+|+.++-.+
T Consensus 157 n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~ 198 (498)
T KOG0637|consen 157 NTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYAL 198 (498)
T ss_pred hhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeec
Confidence 4555666788888887777666 8888888888888776444
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=90.71 E-value=24 Score=36.92 Aligned_cols=97 Identities=8% Similarity=-0.030 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhc-C-------Cch----------------------HHHHHHHH
Q psy17080 399 EFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF-A-------PGS----------------------FITISLAM 448 (565)
Q Consensus 399 ~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~-~-------~~~----------------------~~~~~~~~ 448 (565)
.++..++-.++.++++|+++.-+..........+++.+ . ++. |...++.+
T Consensus 72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv 151 (491)
T PF03219_consen 72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYV 151 (491)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 34455667788999999887665544443333333211 1 111 11222222
Q ss_pred HHHHHHHHHHH-HHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 449 VGKFAISSSNV-IIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 449 ~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
..-..-....+ ..+.+++|.++.++..+..++....+++|.++++.+
T Consensus 152 ~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~ 199 (491)
T PF03219_consen 152 MAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQL 199 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333233334 468999999999999999999999999999988777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3097|consensus | Back alignment and domain information |
|---|
Probab=89.17 E-value=23 Score=34.46 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=66.5
Q ss_pred HHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhhcccccc--chh-
Q psy17080 166 LGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGG--KWL- 242 (565)
Q Consensus 166 lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~--~~r- 242 (565)
+..+..+++.+.+..++|-|+++.++....... +..-+-+.+..++-.-.+.|++.+..+..--+|+++.-.. +.|
T Consensus 69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~ 147 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRG 147 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhh
Confidence 344455555568889999999998887766543 2233447788999999999999999998888888777542 223
Q ss_pred ------------HHHHHHhhhhhHHHHHHHHHH
Q psy17080 243 ------------TIMGVMYLFPVPVGYIAISGI 263 (565)
Q Consensus 243 ------------~~~~~~~~~~~~lG~~~~~~l 263 (565)
+....+++....+|.++...+
T Consensus 148 ~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 148 EQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred hhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 334455555556665554433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=88.32 E-value=5.7 Score=40.65 Aligned_cols=118 Identities=13% Similarity=-0.089 Sum_probs=85.0
Q ss_pred cccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHh---c---c----hhHHHHHHHH
Q psy17080 147 WDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAI---S---P----WFELYLVVRF 216 (565)
Q Consensus 147 ~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~---~---~----~~~~l~~~r~ 216 (565)
-|+ +...+|..-+.-.+..+.|.+...++.+|+|..+.-+++.........++.. . + +...++.+-.
T Consensus 288 ~G~---s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~ 364 (432)
T PF06963_consen 288 QGY---SPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIA 364 (432)
T ss_pred CCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHH
Confidence 366 7788899999999999999999999999999988877776655443333322 2 2 2233444444
Q ss_pred HHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh
Q psy17080 217 FLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS 267 (565)
Q Consensus 217 l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~ 267 (565)
+.=+|.=+.-....-++-|..|+++||...+.-....++-.++...++...
T Consensus 365 ~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 365 LSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444454455666778889999999999999998888777777766655544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=87.50 E-value=5.3 Score=40.00 Aligned_cols=114 Identities=13% Similarity=0.042 Sum_probs=81.6
Q ss_pred cchhhHHHHHH-HHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHH-------HhcchhHHHHHHHHHHhhhhhh
Q psy17080 153 NSSLESLAEMV-FLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLV-------AISPWFELYLVVRFFLGFFCVS 224 (565)
Q Consensus 153 ~~~~~~l~~s~-~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~-------~~~~~~~~l~~~r~l~G~~~~~ 224 (565)
+.+..-+...+ |.+.-.+|.+...++-++=.|+..+...+=+..+-.+.. .+-.+-+++++.-.+.|+..|-
T Consensus 280 ~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGY 359 (406)
T KOG1479|consen 280 GDWYALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGY 359 (406)
T ss_pred chhhHHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccch
Confidence 45666777777 899999997777776655433332222222222222221 2245677888999999999999
Q ss_pred hHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHH
Q psy17080 225 IVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYY 266 (565)
Q Consensus 225 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~ 266 (565)
.....+.+..+-.+++++..+..+.......|...|..+++.
T Consensus 360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l 401 (406)
T KOG1479|consen 360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV 401 (406)
T ss_pred HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999888888888888888777654
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=87.47 E-value=6.9 Score=40.29 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=79.1
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhcccccccch--hhHHHHH--HHHHHHHHHHHh---------cchhHHHHHHHHHHhhh
Q psy17080 155 SLESLAEMVFLLGVAFGGFFSGLVSDKFGRK--KALMGSL--VFQLVLGVLVAI---------SPWFELYLVVRFFLGFF 221 (565)
Q Consensus 155 ~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr--~~l~~~~--~l~~~~~~~~~~---------~~~~~~l~~~r~l~G~~ 221 (565)
+..-+...+|.+|-.+|..+..+.. .-++| ++++.+. +++.-..++|.. -++-+..++..++.|+.
T Consensus 307 ~~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~glt 385 (437)
T TIGR00939 307 FYPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFS 385 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHh
Confidence 4667778888899999888665431 12223 3333221 222222233332 24666778889999999
Q ss_pred hhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHH
Q psy17080 222 CVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYY 266 (565)
Q Consensus 222 ~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~ 266 (565)
.|-....++.+..+..++++|..+..+...+..+|..+|..++..
T Consensus 386 nGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred hhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888877654
|
|
| >KOG2601|consensus | Back alignment and domain information |
|---|
Probab=83.11 E-value=23 Score=35.07 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17080 449 VGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL 495 (565)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i 495 (565)
...+|.=..-....-...|..|.+.|+.+.|+.|.....-.++.-++
T Consensus 395 aaR~GLW~fDlAVtqimQe~VpEseR~vv~gvqnsL~~~ldll~~il 441 (503)
T KOG2601|consen 395 AARLGLWMFDLAVTQIMQETVPESERCVVFGVQNSLNSALDLLKDIL 441 (503)
T ss_pred HHHhhHHhccHHHHHHHHHhcchhhhhhhHhHHHHHHHHHHHHHHhE
Confidence 33444444445566778999999999999999999888776665544
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=82.53 E-value=11 Score=35.33 Aligned_cols=103 Identities=25% Similarity=0.370 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHhhhhhhhhccccc-ccchhhHH----HHHHHHHHHHHHHHh-cc----hhHHHHHHHHHHhhhhhhhH
Q psy17080 157 ESLAEMVFLLGVAFGGFFSGLVSDK-FGRKKALM----GSLVFQLVLGVLVAI-SP----WFELYLVVRFFLGFFCVSIV 226 (565)
Q Consensus 157 ~~l~~s~~~lg~~ig~~~~G~l~Dr-~Grr~~l~----~~~~l~~~~~~~~~~-~~----~~~~l~~~r~l~G~~~~~~~ 226 (565)
.....-++..|..+|.+..|++... +-||+.+. .++++..++.++..+ .. ++..+++.-|+.|++.=+..
T Consensus 143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ 222 (267)
T PF07672_consen 143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ 222 (267)
T ss_pred hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 4556777888888999999999875 56666444 234444444444212 21 35667788888888764444
Q ss_pred hhhhhhhccccccchhHHHHHHhhhhhHHHHHHH
Q psy17080 227 FSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAI 260 (565)
Q Consensus 227 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~ 260 (565)
++...+--|. +...+.+..-.++..|++|.++-
T Consensus 223 ~ViL~lPhEy-K~~~pk~ig~~Fg~iWGfGY~~y 255 (267)
T PF07672_consen 223 GVILNLPHEY-KGYNPKKIGIQFGLIWGFGYIFY 255 (267)
T ss_pred HHHhcChhhh-cCCCcceehhHHHHHHHHHHHHH
Confidence 4443333333 33334445555666777777653
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=81.51 E-value=12 Score=35.21 Aligned_cols=120 Identities=17% Similarity=0.093 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHH-hcccc-----cchh
Q psy17080 399 EFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPI-YTAEL-----FPTK 472 (565)
Q Consensus 399 ~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~-----~p~~ 472 (565)
.++...+.|-++||.|||+.-+...+...++|+.= ..+.....++.-.++|+..+..++..-+ ++.|. +|.+
T Consensus 85 smLFGtivgSLaDkqGRKracvtycitYiLsCiTK--hSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~Feqq 162 (454)
T KOG4332|consen 85 SMLFGTIVGSLADKQGRKRACVTYCITYILSCITK--HSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQ 162 (454)
T ss_pred HHHHHHHHHHHHhhhccccceeeehHHHHHHHHhh--cCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHh
Confidence 34455667789999999987665555555555432 2344344455566677766666665443 33443 3443
Q ss_pred hhhhHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q psy17080 473 MRNLGVGASS-----VPAGVALILIPYLWHMQSINIHFPMGLLGVVGVLGGLS 520 (565)
Q Consensus 473 ~r~~~~g~~~-----~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~i~~~~ 520 (565)
.....++=.. ...-+.+..+.++...-..|+..||-..+.+..++..+
T Consensus 163 Wls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAv 215 (454)
T KOG4332|consen 163 WLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAV 215 (454)
T ss_pred hhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 3332222221 11223333344443334457777887666655554433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 565 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 2e-06 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 565 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 2e-09 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 7e-07 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 52/410 (12%), Positives = 114/410 (27%), Gaps = 93/410 (22%)
Query: 164 FLLGVAFGGFFSGLVSDKFGRKK----ALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219
+ F F G VSD+ + L+ + L +G + + + V+ F G
Sbjct: 71 ISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCG 130
Query: 220 FF-------CVSIVFSGFVLCMELVGGKWL------TIMGVM----YLFPVPVGYIAISG 262
+F C + W I+ V + + + G
Sbjct: 131 WFQGMGWPPCGRTM------------VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178
Query: 263 IAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKL 322
+A+++ W ++ I + M + +E D + +
Sbjct: 179 MAWFND-WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQ- 236
Query: 323 PLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYII---------WFSVYLV 373
+ K++ + + L+ I+ + W YL
Sbjct: 237 ----------------ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLK 280
Query: 374 -YYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFI------LLKMGRRRPLCLTTLGA 426
L + E+ I ++ + + R
Sbjct: 281 EVKH--FALDKSS-------WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331
Query: 427 GLA-CLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTK-------MRNLG- 477
+A + + A + + +V F I ++I ++ EL P K L
Sbjct: 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG 391
Query: 478 --VGASSVPAGVALILIPYLWHMQSINIHFPMGLLGVVGVLGGLSVLLLP 525
G+ + A V + + W M ++G + L ++++
Sbjct: 392 YLGGSVAASAIVGYTVDFFGWDG------GFMVMIGGSILAVILLIVVMI 435
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 7e-07
Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 14/141 (9%)
Query: 163 VFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFF- 221
+LL F G +SD+ GR+ ++ + ++ ++ + + + G
Sbjct: 43 AYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGT 102
Query: 222 CVSIVFSGFVLCMELVGGKWLT-----IMGVMYLFPV--PVGYIAISGIAYYSHNWRLLQ 274
V V + L +L L + + + P+ P+ I G+ NWR
Sbjct: 103 GVGGVMA-RTLPRDLYERTQLRHANSLLNMGILVSPLLAPL----IGGLLDTMWNWRACY 157
Query: 275 WVITIPTIF-FLTLWWIMPES 294
+ + ++ MPE+
Sbjct: 158 LFLLVLCAGVTFSMARWMPET 178
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 565 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.98 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.96 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.95 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.93 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.91 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.24 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.15 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.07 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.04 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.99 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.96 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.95 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-40 Score=343.84 Aligned_cols=384 Identities=21% Similarity=0.332 Sum_probs=279.0
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHH------------------hcchhHHHHHH
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVA------------------ISPWFELYLVV 214 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~------------------~~~~~~~l~~~ 214 (565)
+..+.|++.+++.+|.++|++++|+++||+|||++++++.+++.+++++++ +++|+++++++
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 456679999999999999999999999999999999999999999999998 47899999999
Q ss_pred HHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh-----------cchhHHHHHHHHHHHH
Q psy17080 215 RFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS-----------HNWRLLQWVITIPTIF 283 (565)
Q Consensus 215 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-----------~~Wr~~~~~~~~~~~~ 283 (565)
|+++|++.|+..+...+++.|+.|+++|++..++.+.+..+|.++++.++... ..||+.+.+..++.++
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL 212 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999988877653 2588888888888888
Q ss_pred HHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHH
Q psy17080 284 FLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQ 363 (565)
Q Consensus 284 ~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 363 (565)
.++..+++||||||+..+++.+++++.+++....+..+.. ..+.. +.....++.......++.+.........
T Consensus 213 ~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (491)
T 4gc0_A 213 FLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQA------VQEIK-HSLDHGRKTGGRLLMFGVGVIVIGVMLS 285 (491)
T ss_dssp HHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHH------HHHHH-HHHHHHHHHTTHHHHSCCTHHHHHHHHH
T ss_pred hhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHH------HHHHH-HHHHhhhhhhhHHHHhcccHHHHHHHHH
Confidence 8888899999999999999999999999887654321100 00000 0000111111223334444443333333
Q ss_pred HHHHH--HHHHhhhhhhhccCcCCC---cHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhc--
Q psy17080 364 YIIWF--SVYLVYYGLVLNLSNIGG---DVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF-- 436 (565)
Q Consensus 364 ~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~-- 436 (565)
.+..+ .....+|...+ ....+. +......+.++..+++.++++++.||+|||+.++.+....+++++.+...
T Consensus 286 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~ 364 (491)
T 4gc0_A 286 IFQQFVGINVVLYYAPEV-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 364 (491)
T ss_dssp HHHHHTCHHHHHHHHHHH-HHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHhcchHH-HHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh
Confidence 33222 12223333222 222222 23445566778889999999999999999999998888877776655421
Q ss_pred C-CchHHHHHHHHHHHHHHHH-HHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH--------HHHhhhhhH
Q psy17080 437 A-PGSFITISLAMVGKFAISS-SNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWH--------MQSINIHFP 506 (565)
Q Consensus 437 ~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~--------~~~~~~~~~ 506 (565)
. ...+...+..++...+.+. ..++.+++.+|++|++.|+++.|+.+..++++++++|.+.. ....+....
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~ 444 (491)
T 4gc0_A 365 TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFS 444 (491)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHH
T ss_pred cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 1 1223323333332223222 23677899999999999999999999999999888876621 123345567
Q ss_pred HHHHHHHHHHHHHH-HhhcccCCCCCccHHHhhhcCCCCCC
Q psy17080 507 MGLLGVVGVLGGLS-VLLLPDTTGLADNLHQLENDVPIQTP 546 (565)
Q Consensus 507 ~~~~~~~~~i~~~~-~~~l~et~~~~~~~~~~~~~~~~~~~ 546 (565)
+++++++++++.++ ++++||||+ +++||+|+..+++++
T Consensus 445 ~~i~~~~~~~~~i~~~~~~PETkg--~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 445 YWIYGCMGVLAALFMWKFVPETKG--KTLEELEALWEPETK 483 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCTT--CCHHHHGGGTC----
T ss_pred HHHHHHHHHHHHHHHHheecCCCC--CCHHHHHHHhCCCCc
Confidence 88888888887765 478999999 899999988776543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-32 Score=280.19 Aligned_cols=355 Identities=12% Similarity=0.089 Sum_probs=267.0
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHHhhhhhhhHhh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAI----SPWFELYLVVRFFLGFFCVSIVFS 228 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~ 228 (565)
+..+.|++.+++.++..++++++|+++||+|||++++.+.++.+++.+++++ +++++.++++|++.|++.+...+.
T Consensus 60 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~ 139 (451)
T 1pw4_A 60 SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPP 139 (451)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccch
Confidence 6667899999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cc-hhHHHHHHHHHHHHHHH-HhhhcccchhHHHhcCC
Q psy17080 229 GFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HN-WRLLQWVITIPTIFFLT-LWWIMPESPRWLVSMGR 303 (565)
Q Consensus 229 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~-Wr~~~~~~~~~~~~~~~-~~~~~pesp~~l~~~~~ 303 (565)
..+++.|++|+++|+++.++...+..+|.++++.++..+ .+ ||+.|++.+++.++..+ .++++||+|++...+.+
T Consensus 140 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (451)
T 1pw4_A 140 CGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI 219 (451)
T ss_dssp HHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC
T ss_pred HHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh
Confidence 999999999999999999999999999999999888653 46 99999998887666544 45778998864321111
Q ss_pred HHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhhhhhhccCc
Q psy17080 304 NKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSN 383 (565)
Q Consensus 304 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (565)
.+. +...+. + ...++++....++...++++++|.++...+..++..+.........+.+..+
T Consensus 220 ~~~--------------~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (451)
T 1pw4_A 220 EEY--------------KNDYPD-D---YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKE 281 (451)
T ss_dssp TTT--------------CCC-----------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTT
T ss_pred hhh--------------cccccc-c---chhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000000 0 0000000111111124678889988887777666665544444444444443
Q ss_pred -CCCcH---HHHHHHHHHHHHHHHHHHHHHHhhc--CChHHHHHHHHHHH-HHHHHHhhcCC--chHHHHHHHHHHHHHH
Q psy17080 384 -IGGDV---YLNTIISGIVEFPAIVISIFILLKM--GRRRPLCLTTLGAG-LACLMTLGFAP--GSFITISLAMVGKFAI 454 (565)
Q Consensus 384 -~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~--grr~~l~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 454 (565)
.+.+. .......+++.+++.++.+++.||+ +||+.+..+..+.. ++++++. +.+ +.+...+..++.+++.
T Consensus 282 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 360 (451)
T 1pw4_A 282 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW-MNPAGNPTVDMICMIVIGFLI 360 (451)
T ss_dssp BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT-SCCTTCHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH-HhcccCHHHHHHHHHHHHHHH
Confidence 55544 3445566778889999999999999 99998888777766 5555554 443 3355555666677777
Q ss_pred HHHHHHHHHhcccccchhhhhhHHHHHHHHHHH-HHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhccc
Q psy17080 455 SSSNVIIPIYTAELFPTKMRNLGVGASSVPAGV-ALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLLPD 526 (565)
Q Consensus 455 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l-g~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~e 526 (565)
+...+....+..|.+|++.|+++.|+.+....+ |..++|.+ ...+..++...+++.+++.+++.++.+++++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 361 YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp THHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777788889999999999999999999999999 99999988 3455667888888888888888777665543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-30 Score=266.53 Aligned_cols=342 Identities=12% Similarity=0.001 Sum_probs=260.5
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHH---HhcchhHHHHHHHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLV---AISPWFELYLVVRF 216 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~---~~~~~~~~l~~~r~ 216 (565)
.|.+.+++++ +..+.|++.+++.+++.++++++|+++||+|||++++.+.++.+++.+++ +++++++.+++.|+
T Consensus 49 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (438)
T 3o7q_A 49 LPQFQQAFTL---TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF 125 (438)
T ss_dssp HHHHHHHSCC---CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 5678889999 88999999999999999999999999999999999999999999999999 88999999999999
Q ss_pred HHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhc-----c----------------------
Q psy17080 217 FLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSH-----N---------------------- 269 (565)
Q Consensus 217 l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~-----~---------------------- 269 (565)
+.|++.+...+...+++.|++|+++|+++.++.+.+..+|.++++.++..+. .
T Consensus 126 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (438)
T 3o7q_A 126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLV 205 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999998876542 2
Q ss_pred --hhHHHHHHHHHHHHHHHHhhh--cccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCccc
Q psy17080 270 --WRLLQWVITIPTIFFLTLWWI--MPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKV 345 (565)
Q Consensus 270 --Wr~~~~~~~~~~~~~~~~~~~--~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (565)
||+.|++.++..++..+..++ .||+++.. ++++++++.+.
T Consensus 206 ~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------------------------------------~~~~~~~~~~~ 249 (438)
T 3o7q_A 206 LSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN------------------------------------HSDAKQGSFSA 249 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC------------------------------------CCCSSTTSHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc------------------------------------cccccccchhh
Confidence 999998877666555544433 45553210 00011112233
Q ss_pred chhhccccHHHHHHHHHHHHHHHHHHHhhhhhhhc-cC-cCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHH
Q psy17080 346 QVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLN-LS-NIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLC 420 (565)
Q Consensus 346 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~ 420 (565)
++++++|+|.++...+..++............+.+ .+ .++.+. .....+..++.+++.++.+++.||+|||+.+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~ 329 (438)
T 3o7q_A 250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLA 329 (438)
T ss_dssp HHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 56778899988887777665555443332222322 32 224443 34455567788899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHH
Q psy17080 421 LTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHM 498 (565)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~ 498 (565)
.+.++.+++++++. +.++.+. ....++.+++.+..++..+.+..|.+|++ ++.+.++.. .+.+|+.++|.+ ...
T Consensus 330 ~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~ 405 (438)
T 3o7q_A 330 AYALIAMALCLISA-FAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVS 405 (438)
T ss_dssp HHHHHHHHHHHHHH-HCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHH
Confidence 98888887777666 5554443 33446667778888899999999999977 888888877 677999999998 345
Q ss_pred HHhh-hhhHHHHHHHHHHHHHHHHhhc
Q psy17080 499 QSIN-IHFPMGLLGVVGVLGGLSVLLL 524 (565)
Q Consensus 499 ~~~~-~~~~~~~~~~~~~i~~~~~~~l 524 (565)
+..+ +...+.+.+++.++..+..+..
T Consensus 406 ~~~g~~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 406 DAAGNIPTAELIPALCFAVIFIFARFR 432 (438)
T ss_dssp HHHTSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 6666 7777777665555444433333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=250.61 Aligned_cols=383 Identities=11% Similarity=0.027 Sum_probs=243.7
Q ss_pred eeccccccCcchhhHHHHHHHHHHHhhhhhhhhccccc-ccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhh
Q psy17080 144 ISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDK-FGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFC 222 (565)
Q Consensus 144 ~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr-~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 222 (565)
.+|+++ +..+.+++.+++.++..+++++.|+++|| +|||++++.+.++.+++.++++++++++.+++.|++.|++.
T Consensus 46 ~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 122 (491)
T 4aps_A 46 TGDLHI---TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGT 122 (491)
T ss_dssp HTSCCS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHH
T ss_pred hhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 445788 88899999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred hhhHhhhhhhhccccccch--hHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhc-ccch-
Q psy17080 223 VSIVFSGFVLCMELVGGKW--LTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIM-PESP- 295 (565)
Q Consensus 223 ~~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~-pesp- 295 (565)
+...+...+++.|++|+++ |+.+.++.+.+..+|.++++.++..+ .+||+.|++.++..++.++..++. |+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 123 GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 9999999999999999988 77788888899999999999888765 589999999877666555444332 2210
Q ss_pred ---hHHHhcCCHHHHHHHHHH--------------HHHHcCCCCchhHHHHHH-----HHhhhhccccCcccchhhcccc
Q psy17080 296 ---RWLVSMGRNKEAMKILGD--------------AAKFNSRKLPLNLEKLLK-----ESVLSTNQDVGKKVQVMDLWRT 353 (565)
Q Consensus 296 ---~~l~~~~~~~~a~~~l~~--------------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~ 353 (565)
+....+.+.++.++..++ ....++.+.++....... .........++......+..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV 282 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 000111233333333322 111222222111100000 0000000000001111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCc-CC---CcHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHH-----HHHH
Q psy17080 354 PLIRLISFVQYIIWFSVYLVYYGLVLNLSN-IG---GDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLC-----LTTL 424 (565)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~-----~~~~ 424 (565)
.......+...+.+..........+.+..+ .+ ..........++..+++.++.+++.||++||+... .+.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLM 362 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 222223333333333322222222221111 11 22334445566777788889999999999986544 5566
Q ss_pred HHHHHHHHHhhcC--------CchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH-
Q psy17080 425 GAGLACLMTLGFA--------PGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL- 495 (565)
Q Consensus 425 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i- 495 (565)
+.+++++++.... .+.+......++.+++.+...+..+.++.|.+|++.|+++.|+.++...+|.+++|.+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~ 442 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV 442 (491)
T ss_dssp HHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555544211 1234555566667777777778889999999999999999999999999999999998
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhh-cccCCC
Q psy17080 496 WHMQSINIHFPMGLLGVVGVLGGLSVLL-LPDTTG 529 (565)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-l~et~~ 529 (565)
....+.++...+.+++++.+++.++.++ .++.++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 443 TLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp GGGGGSSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456666788888777777665544 444443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-28 Score=245.29 Aligned_cols=325 Identities=10% Similarity=0.005 Sum_probs=238.6
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.+.+.+++++ +..+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.+++++++.+++.|++.|
T Consensus 23 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 99 (375)
T 2gfp_A 23 IADMARDLNV---REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG 99 (375)
T ss_dssp HHHHHTTSSS---TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4667788998 8889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHH-Hhhhcccch
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSH---NWRLLQWVITIPTIFFLT-LWWIMPESP 295 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~---~Wr~~~~~~~~~~~~~~~-~~~~~pesp 295 (565)
++.+...+...+++.|++|+++|+++.++.+.+..+|.++++.++..+. +||+.+++.++..++..+ ..+++||+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 100 MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 9999999999999999999999999999999999999999999988763 799999988887766655 456788875
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhh
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYY 375 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (565)
++. +++++.+.++++++|+|.++...+...+.+........
T Consensus 180 ~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (375)
T 2gfp_A 180 PVD---------------------------------------APRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEA 220 (375)
T ss_dssp TTT---------------------------------------CCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC---------------------------------------cccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 420 00111234567788888888777766655554444433
Q ss_pred hhhhccCc-CCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH-HHHHHHHHhh-cC--CchHHHHHHH
Q psy17080 376 GLVLNLSN-IGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLG-AGLACLMTLG-FA--PGSFITISLA 447 (565)
Q Consensus 376 ~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~-~~~~~~~~~~-~~--~~~~~~~~~~ 447 (565)
..+.+..+ .+.+. .......+++.+++.++.+++.||.+++ +..+... ...+...+.. .. .+.+...+..
T Consensus 221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (375)
T 2gfp_A 221 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPA 298 (375)
T ss_dssp HCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHH
Confidence 33433333 33332 2333344555666666677777776652 2222222 1111111110 10 1224444556
Q ss_pred HHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHH
Q psy17080 448 MVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGL 509 (565)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~ 509 (565)
++.+++.+...+....+..|..| +.|+++.|+.+....+|..++|.+ ...+..++...+.+
T Consensus 299 ~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 299 ALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 66778888888888999999999 789999999999999999999888 33344444444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-26 Score=232.74 Aligned_cols=353 Identities=14% Similarity=0.085 Sum_probs=221.9
Q ss_pred eeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHH---HHHhcchh-HHHHHHHHHH
Q psy17080 143 IISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGV---LVAISPWF-ELYLVVRFFL 218 (565)
Q Consensus 143 i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~---~~~~~~~~-~~l~~~r~l~ 218 (565)
+.+++++ +..+.|++.+.+.++..++++++|+++||+|||++++.+..+.+++.. ...+++.. ..++..+++.
T Consensus 34 l~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (417)
T 2cfq_A 34 LHDINHI---SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVG 110 (417)
T ss_dssp HHTTTCC---CTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGG
T ss_pred HHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788 778899999999999999999999999999999999998887655322 11222221 1234566676
Q ss_pred hhhhhhhHhhhhhhhcccccc--chhHHHHHHhhhhhHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHHhhhcccc
Q psy17080 219 GFFCVSIVFSGFVLCMELVGG--KWLTIMGVMYLFPVPVGYIAISGIAYYS--HNWRLLQWVITIPTIFFLTLWWIMPES 294 (565)
Q Consensus 219 G~~~~~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~lG~~~~~~l~~~~--~~Wr~~~~~~~~~~~~~~~~~~~~pes 294 (565)
|++.+...+.....+.++.++ ++|+...+....+..+|..+++.++..+ .+||+.|++.+++.++..+..++.||+
T Consensus 111 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 190 (417)
T 2cfq_A 111 GIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190 (417)
T ss_dssp GSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCcc
Confidence 766655555544555555543 3456556666666777777777766554 379999988776655555554444443
Q ss_pred hhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhh
Q psy17080 295 PRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVY 374 (565)
Q Consensus 295 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 374 (565)
|+. +.+.++ +. +++.++....++++++|+|.++...+..+..........
T Consensus 191 ~~~---~~~~~~------------~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (417)
T 2cfq_A 191 APS---SATVAN------------AV---------------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFD 240 (417)
T ss_dssp CSC---SSCSSS------------SS---------------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc---cccccc------------cc---------------ccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH
Confidence 210 000000 00 000001111234567888887765554333222211110
Q ss_pred hhhhhccC-cCC-----C-cHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHH
Q psy17080 375 YGLVLNLS-NIG-----G-DVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLA 447 (565)
Q Consensus 375 ~~~~~~~~-~~~-----~-~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (565)
...+.+.. .++ . .......+..+.++++.++.+++.||+|||+.+..+..+.++..+++. +.++.+...+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 319 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-FATSALEVVILK 319 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT-TCCSHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHH
Confidence 01111111 111 1 112334455567788899999999999999998888877777666655 445544444444
Q ss_pred HHHHHHHHHHHHHHHHhcccccchhhhhhHHHHH-HHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHH-hh
Q psy17080 448 MVGKFAISSSNVIIPIYTAELFPTKMRNLGVGAS-SVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSV-LL 523 (565)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~-~~ 523 (565)
++.+++.+...+..+.++.|.+|++.|+++.|+. +....+|++++|.+ ...+..++...|.+.+++.+++.++. +.
T Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 320 TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555666788999999999999999985 78888999999988 33455677778888888888777665 44
Q ss_pred cccCCC
Q psy17080 524 LPDTTG 529 (565)
Q Consensus 524 l~et~~ 529 (565)
.||+++
T Consensus 400 ~~~~~~ 405 (417)
T 2cfq_A 400 LSGPGP 405 (417)
T ss_dssp SCCSCT
T ss_pred hcCCCc
Confidence 566554
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=221.15 Aligned_cols=137 Identities=12% Similarity=0.120 Sum_probs=123.1
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccc-cchhhHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHhhhhhhhHhhhh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKF-GRKKALMGSLVFQLVLGVLVAISP-WFELYLVVRFFLGFFCVSIVFSGF 230 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~-Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~ 230 (565)
+..+.+++.+++.++..+++++.|+++||+ |||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...+...
T Consensus 52 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (524)
T 2xut_A 52 RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVS 131 (524)
T ss_dssp TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHH
Confidence 778899999999999999999999999999 999999999999999999999999 999999999999999999999999
Q ss_pred hhhccccccchhHHHHHH---hhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhh
Q psy17080 231 VLCMELVGGKWLTIMGVM---YLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWW 289 (565)
Q Consensus 231 ~~i~e~~~~~~r~~~~~~---~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~ 289 (565)
+++.|++|+++|+++.+. ...+..+|.++++.++..+ .+||+.|++.++..++..+..+
T Consensus 132 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 132 SFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876666 8888899999998877654 4899999988877666555443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-10 Score=118.79 Aligned_cols=142 Identities=15% Similarity=0.012 Sum_probs=118.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhc----CCchHHHHHHHHHHHHHHHHHHHHHH
Q psy17080 387 DVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF----APGSFITISLAMVGKFAISSSNVIIP 462 (565)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (565)
+.........++..++.++.|++.||+|||+++.++.++.+++.++.. + .++.+..++..++.+++.+...+...
T Consensus 63 ~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~ 141 (451)
T 1pw4_A 63 DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG-FVPWATSSIAVMFVLLFLCGWFQGMGWPPCG 141 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HCHHHHSSSSHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHH-hhhhccccHHHHHHHHHHHHHHhhhccchHH
Confidence 345666677788889999999999999999999999999998888887 5 55666777778888999998899999
Q ss_pred HhcccccchhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHhh-hhhHHHHHHHHHHHHHHH-HhhcccCCC
Q psy17080 463 IYTAELFPTKMRNLGVGASSVPAGVALILIPYLW--HMQSIN-IHFPMGLLGVVGVLGGLS-VLLLPDTTG 529 (565)
Q Consensus 463 ~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~--~~~~~~-~~~~~~~~~~~~~i~~~~-~~~l~et~~ 529 (565)
+++.|.+|++.|+.+.|+.+....+|.+++|.+. ..+..+ +...+++.+++.++..++ .+++||+..
T Consensus 142 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 142 RTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 9999999999999999999999999999999883 356667 888899888887766554 466777654
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-09 Score=111.23 Aligned_cols=136 Identities=8% Similarity=0.012 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH---hhcCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17080 388 VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMT---LGFAPGSFITISLAMVGKFAISSSNVIIPIY 464 (565)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (565)
..+......++..++.++.|++.||+|||+.+.++.++.+++.++. . +.++.+..++..++.+++.+...+...++
T Consensus 63 ~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~ 141 (438)
T 3o7q_A 63 AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-EIMNYTLFLVGLFIIAAGLGCLETAANPF 141 (438)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHHhhHHHhhhhHHHH
Confidence 3455556667778899999999999999999999999999888877 5 56677777788888999999999999999
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHH-HHhh-------------------------hhhHHHHHHHHHHH
Q psy17080 465 TAELFPTKMRNLGVGASSVPAGVALILIPYL--WHM-QSIN-------------------------IHFPMGLLGVVGVL 516 (565)
Q Consensus 465 ~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~-~~~~-------------------------~~~~~~~~~~~~~i 516 (565)
+.|.+|++.|+.+.|+.+....+|.+++|.+ ... ...+ +..++.+.+++.++
T Consensus 142 ~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 221 (438)
T 3o7q_A 142 VTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLL 221 (438)
T ss_dssp HHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 333 2222 56677777766666
Q ss_pred HHHHHhhc
Q psy17080 517 GGLSVLLL 524 (565)
Q Consensus 517 ~~~~~~~l 524 (565)
..++.++.
T Consensus 222 ~~~~~~~~ 229 (438)
T 3o7q_A 222 VALLIMLT 229 (438)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 55554443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.2e-09 Score=108.05 Aligned_cols=133 Identities=11% Similarity=0.100 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLK-MGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAE 467 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr-~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 467 (565)
........++..++.++.|+++|| +|||+++..+.++.+++.++.. +.++.+...+..++.+++.+...+...+++.|
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 135 (491)
T 4aps_A 57 ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA-LPFGASALFGSIILIIIGTGFLKPNVSTLVGT 135 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH-SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 344556667788899999999999 8999999999999999888887 66677777777888899999999999999999
Q ss_pred ccchhh--hhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHh
Q psy17080 468 LFPTKM--RNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVL 522 (565)
Q Consensus 468 ~~p~~~--r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~ 522 (565)
.+|++. |+.+.++.+....+|..++|.+ ...+..++...|.+.++..+++.++.+
T Consensus 136 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 136 LYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999988 7778888889999999999988 334557888888888777776665544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-09 Score=109.24 Aligned_cols=151 Identities=12% Similarity=-0.025 Sum_probs=118.1
Q ss_pred hhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q psy17080 378 VLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAI 454 (565)
Q Consensus 378 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (565)
+...++++.+. ........+...++.++.|++.||+|||+.+..+.++.+++.++.. +.++.+...+..++.+++.
T Consensus 24 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~g~~~ 102 (375)
T 2gfp_A 24 ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV-TTSSLTVLIAASAMQGMGT 102 (375)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHH
Confidence 33445555443 3445556677788899999999999999999999999888888777 5555566677777888888
Q ss_pred HHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHH-HHhhcccCCC
Q psy17080 455 SSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWH--MQSINIHFPMGLLGVVGVLGGL-SVLLLPDTTG 529 (565)
Q Consensus 455 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~--~~~~~~~~~~~~~~~~~~i~~~-~~~~l~et~~ 529 (565)
+...+....++.|.+|++.|+++.++.+....+|..++|.+.. .+..++...+.+.+++.++..+ ..+.+||++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 103 GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 8888999999999999999999999999999999999999832 3445778888888777776665 3456677654
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=9e-10 Score=111.88 Aligned_cols=142 Identities=13% Similarity=0.066 Sum_probs=115.0
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhh
Q psy17080 154 SSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLC 233 (565)
Q Consensus 154 ~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 233 (565)
....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457777888888889999999999999999999999888888888888888888888888888888777777778899
Q ss_pred ccccccchhHHHHHH-hhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHH-hhhcccch
Q psy17080 234 MELVGGKWLTIMGVM-YLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTL-WWIMPESP 295 (565)
Q Consensus 234 ~e~~~~~~r~~~~~~-~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~-~~~~pesp 295 (565)
.|.+|++.|+...++ ++.+..+|..++|.++..+ .+++..|.+.++..++..+. +++.||.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999998888 4778888988888877654 36777888877776666554 44456653
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-08 Score=104.69 Aligned_cols=137 Identities=13% Similarity=0.111 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhh-----------------cCCchHHHHHHHHHHHHHHH
Q psy17080 393 IISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLG-----------------FAPGSFITISLAMVGKFAIS 455 (565)
Q Consensus 393 ~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~ 455 (565)
....++.++|.++.|+++||+|||+.+.++.++..++.++.+. +.++.+.+++.-++.|++.+
T Consensus 62 s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G 141 (491)
T 4gc0_A 62 ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVG 141 (491)
T ss_dssp HTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3445677889999999999999999999999988888777652 12344667777888999999
Q ss_pred HHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH----------HhhhhhHHHHHHHHHHHHHHHHhhcc
Q psy17080 456 SSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWHMQ----------SINIHFPMGLLGVVGVLGGLSVLLLP 525 (565)
Q Consensus 456 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~----------~~~~~~~~~~~~~~~~i~~~~~~~l~ 525 (565)
...+...++++|..|++.|+...++.+....+|.++++.+.... ..++...+.+..+..++..+..+++|
T Consensus 142 ~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 221 (491)
T 4gc0_A 142 LASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVP 221 (491)
T ss_dssp HHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCC
Confidence 99999999999999999999999999998888888887763221 12344445555555555556667888
Q ss_pred cCCC
Q psy17080 526 DTTG 529 (565)
Q Consensus 526 et~~ 529 (565)
|+.+
T Consensus 222 eSp~ 225 (491)
T 4gc0_A 222 ESPR 225 (491)
T ss_dssp CCHH
T ss_pred CChH
Confidence 8754
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-08 Score=105.78 Aligned_cols=136 Identities=8% Similarity=0.006 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHhhcCC-chHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17080 388 VYLNTIISGIVEFPAIVISIFILLKM-GRRRPLCLTTLGAGLACLMTLGFAP-GSFITISLAMVGKFAISSSNVIIPIYT 465 (565)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~dr~-grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (565)
.........++.+++.++.|+++||+ |||+.+.++.++.+++.++.. +.+ +.+...+..++.+++.+...+...+++
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 134 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLA-IFEHSVQGFYTGLFLIALGSGGIKPLVSSFM 134 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHH-HTSSCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHhccccchhHHHHH
Confidence 45556667778888999999999999 999999999988888888777 555 666667777788888888889999999
Q ss_pred ccccchhhhhhHHHH---HHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhc
Q psy17080 466 AELFPTKMRNLGVGA---SSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLL 524 (565)
Q Consensus 466 ~e~~p~~~r~~~~g~---~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 524 (565)
.|.+|++.|+.+.+. .+....+|.+++|.+ ...+..++...|.+.+++.+++.++.++.
T Consensus 135 ~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 135 GDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999776665 888889999999988 44455678888888887777666555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 565 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 8e-13 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 6e-08 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 68.2 bits (165), Expect = 8e-13
Identities = 44/386 (11%), Positives = 110/386 (28%), Gaps = 36/386 (9%)
Query: 158 SLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPW----FELYLV 213
A + F F G VSD+ + L L+ + + + PW + V
Sbjct: 62 GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 121
Query: 214 VRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGI----AYYSHN 269
+ F G+F + K + ++ VG + + ++
Sbjct: 122 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND 181
Query: 270 WRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKL 329
W ++ I + M + +E D + +
Sbjct: 182 WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQ-------- 233
Query: 330 LKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIGG--- 386
+ K++ + + L+ I+ ++ Y + L +
Sbjct: 234 ---------ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL 284
Query: 387 -DVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF----APGSF 441
+ P ++ ++ K+ R L + T+ + A
Sbjct: 285 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPT 344
Query: 442 ITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL---WHM 498
+ + +V F I ++I ++ EL P K G + + + + + +
Sbjct: 345 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 404
Query: 499 QSINIHFPMGLLGVVGVLGGLSVLLL 524
++ +L + ++++
Sbjct: 405 DFFGWDGGFMVMIGGSILAVILLIVV 430
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 52.9 bits (125), Expect = 6e-08
Identities = 44/379 (11%), Positives = 94/379 (24%), Gaps = 37/379 (9%)
Query: 158 SLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFF 217
+ L GL+SDK G +K L+ + LV+ I + L
Sbjct: 46 GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV 105
Query: 218 LGFFCVSIVFSGFVLCMELV---------GGKWLTIMGVMYLFPVPVGYIAISGIAYYSH 268
+ F V + M+ +I GI + +
Sbjct: 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTIN 165
Query: 269 NWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEK 328
N + I + L++ ++P + P
Sbjct: 166 NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQP----- 220
Query: 329 LLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIGGDV 388
+ + + +S + +
Sbjct: 221 -------------------KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVF 261
Query: 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAM 448
T + ++ + + I+ ++G + L L + + + + I +
Sbjct: 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTL 321
Query: 449 VGKFAISSSNVIIPIYTAELFPTKMRNLGVG-ASSVPAGVALILIPYL--WHMQSINIHF 505
F + V Y F + +A+I + L +SI
Sbjct: 322 HM-FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQG 380
Query: 506 PMGLLGVVGVLGGLSVLLL 524
+LG+V + L +
Sbjct: 381 AYLVLGLVALGFTLISVFT 399
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 565 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.93 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.16 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.12 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.4e-31 Score=270.84 Aligned_cols=357 Identities=11% Similarity=0.065 Sum_probs=249.5
Q ss_pred ccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHHhhh
Q psy17080 146 EWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAIS----PWFELYLVVRFFLGFF 221 (565)
Q Consensus 146 ~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~----~~~~~l~~~r~l~G~~ 221 (565)
|+++ +..+.|++.+++.++++++++++|+++||+|||+++..+.++.+++.++++++ ++++.+++.|++.|++
T Consensus 53 ~~g~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 129 (447)
T d1pw4a_ 53 EQGF---SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWF 129 (447)
T ss_dssp SSTT---CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHH
T ss_pred HhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHh
Confidence 3566 77788999999999999999999999999999999999999999999998876 4788999999999999
Q ss_pred hhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHHHHH-hhhcccchh
Q psy17080 222 CVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYY----SHNWRLLQWVITIPTIFFLTL-WWIMPESPR 296 (565)
Q Consensus 222 ~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~~~Wr~~~~~~~~~~~~~~~~-~~~~pesp~ 296 (565)
.+...+...+++.|++|+++|+++.++.+.+..+|.++++.++.. ..+||+.+++.+++.++..+. +++++|+|+
T Consensus 130 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (447)
T d1pw4a_ 130 QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 209 (447)
T ss_dssp HHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred hhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchh
Confidence 999999999999999999999999999999999998888776554 358999999887776655544 556666665
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhh-
Q psy17080 297 WLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYY- 375 (565)
Q Consensus 297 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 375 (565)
........+. ..+..+ +.....+++...++...+..++++.++......++.+........
T Consensus 210 ~~~~~~~~~~----------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (447)
T d1pw4a_ 210 SCGLPPIEEY----------------KNDYPD--DYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDW 271 (447)
T ss_dssp TTCCCSCTTT----------------CCC---------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhh----------------hhhccc--chhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhh
Confidence 3211111000 000000 000111112222334466778888887777666655554443333
Q ss_pred hhhhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH---HHHHHHHhhc-CCchHHHHHHHH
Q psy17080 376 GLVLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGA---GLACLMTLGF-APGSFITISLAM 448 (565)
Q Consensus 376 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~ 448 (565)
...+..+..+.+. .....+..+..+++.++.+++.||++|+.......... .++.++.... ..+.+...+..+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (447)
T d1pw4a_ 272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI 351 (447)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHH
T ss_pred hhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3333333444443 34455667778899999999999999875443333222 2222222211 122355555566
Q ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHH-HHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q psy17080 449 VGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVA-LILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLL 523 (565)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg-~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 523 (565)
+.+++.+...+....+..|.+|++.|+++.|+.+++++++ .+++|.+ ...+..++...+.+.+++.+++.++...
T Consensus 352 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 352 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777888899999999999999999999888875 5667877 3456677888888887777777665543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.4e-24 Score=217.92 Aligned_cols=352 Identities=15% Similarity=0.094 Sum_probs=232.3
Q ss_pred eeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHH----HHHHHHH
Q psy17080 143 IISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELY----LVVRFFL 218 (565)
Q Consensus 143 i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l----~~~r~l~ 218 (565)
+.+++|+ +..++|++.+++.++..++++++|+++||+|||++++.+..+..++.++..+..+.... ++.+.+.
T Consensus 34 l~~~~g~---s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (417)
T d1pv7a_ 34 LHDINHI---SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVG 110 (417)
T ss_dssp HHHHHCC---CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHT
T ss_pred HHHccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 4567888 88999999999999999999999999999999999999999999998888887665543 4455555
Q ss_pred hhhhhhhHhhhhhhhccccccc--hhHHHHHHhhhhhHHHHHHHHHHHHHhc--chhHHHHHHH-HHHHHHHHHhhhccc
Q psy17080 219 GFFCVSIVFSGFVLCMELVGGK--WLTIMGVMYLFPVPVGYIAISGIAYYSH--NWRLLQWVIT-IPTIFFLTLWWIMPE 293 (565)
Q Consensus 219 G~~~~~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~lG~~~~~~l~~~~~--~Wr~~~~~~~-~~~~~~~~~~~~~pe 293 (565)
+.+.+...........+..+++ ++....+........+..+++.++.... +|+..+.... ...+...+..+..+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (417)
T d1pv7a_ 111 GIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190 (417)
T ss_dssp TTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred hhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHHhcc
Confidence 5555555544444444443332 3334455556666667777776665542 4555555544 444455555666777
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHh
Q psy17080 294 SPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLV 373 (565)
Q Consensus 294 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 373 (565)
+|+....+ ++ +++..++.......+.++.+..+................
T Consensus 191 ~~~~~~~~---~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (417)
T d1pv7a_ 191 APSSATVA---NA----------------------------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVF 239 (417)
T ss_dssp SCSSSCSS---HH----------------------------HHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhh---hh----------------------------hhhhcccccccccccccccccccchhhhhHHHHHHHHhh
Confidence 65421000 00 001111111222233344444444333333333222222
Q ss_pred hhhhhhc----cCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHH
Q psy17080 374 YYGLVLN----LSNIGGD---VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISL 446 (565)
Q Consensus 374 ~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (565)
....... ....+.+ .........++..++..+.+++.||.++|+.+..+.++.+++.+.+. +.++.+...+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 318 (417)
T d1pv7a_ 240 DQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-FATSALEVVIL 318 (417)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-TCCCHHHHHHH
T ss_pred hccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccc-cccccchhhHH
Confidence 2111111 1111111 12334455567778888999999999999999999999988888877 67777777778
Q ss_pred HHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHH-HHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHH-h
Q psy17080 447 AMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGAS-SVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSV-L 522 (565)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~-~ 522 (565)
.++.+++.+...+...++..|.+|++.|+++.|+. ++...+|.+++|.+ ...+..++...+++.+++.++..++. +
T Consensus 319 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 319 KTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999986 45567899999988 45677888888999888888777665 4
Q ss_pred hcccCCC
Q psy17080 523 LLPDTTG 529 (565)
Q Consensus 523 ~l~et~~ 529 (565)
.+++++.
T Consensus 399 ~l~~~~~ 405 (417)
T d1pv7a_ 399 TLSGPGP 405 (417)
T ss_dssp HSCCSSC
T ss_pred hhcCCCc
Confidence 4554443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=2.3e-10 Score=114.48 Aligned_cols=142 Identities=15% Similarity=-0.003 Sum_probs=110.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcC----CchHHHHHHHHHHHHHHHHHHHHHH
Q psy17080 387 DVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFA----PGSFITISLAMVGKFAISSSNVIIP 462 (565)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (565)
+..+......++..++.++.|+++||+|||+++.++.++.+++.++.. +. .+.+...+..++.+++.+...+...
T Consensus 60 ~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 138 (447)
T d1pw4a_ 60 DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG-FVPWATSSIAVMFVLLFLCGWFQGMGWPPCG 138 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HCHHHHSSSSHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhcc-ccchhhhhHHHHHHHHHHHHHhhhhhhhHHH
Confidence 456667777788889999999999999999999999998888877766 33 2335666677778888888889999
Q ss_pred HhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH--HHH-hhhhhHHHHHHHHHHHHHHHH-hhcccCCC
Q psy17080 463 IYTAELFPTKMRNLGVGASSVPAGVALILIPYLWH--MQS-INIHFPMGLLGVVGVLGGLSV-LLLPDTTG 529 (565)
Q Consensus 463 ~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~--~~~-~~~~~~~~~~~~~~~i~~~~~-~~l~et~~ 529 (565)
.++.|.+|++.|+.++|+.+....+|.+++|.+.. ... .++...+++.+++.++..++. +++++++.
T Consensus 139 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (447)
T d1pw4a_ 139 RTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 209 (447)
T ss_dssp HHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchh
Confidence 99999999999999999999999999999987722 232 356677777777766655544 55555443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=1.6e-10 Score=113.87 Aligned_cols=140 Identities=13% Similarity=0.058 Sum_probs=121.3
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVL 232 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 232 (565)
+....+...+...++..++.++.+++.||+|||+.+..+.++.+++.++..+.++.+.+++..++.|++.+...+...++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 336 (417)
T d1pv7a_ 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccchhHHHHHHh-hhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHh-hhcc
Q psy17080 233 CMELVGGKWLTIMGVMY-LFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLW-WIMP 292 (565)
Q Consensus 233 i~e~~~~~~r~~~~~~~-~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~-~~~p 292 (565)
+.|.+|+++|++..++. +....+|..+++.+++.+ .||+..+++.++..++..++. +.++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999998874 567788998888877654 378999988887766665554 4444
|