Psyllid ID: psy17102

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
Protein Sequence
EARRKKKEEEEEEEEEKQEEEGEEKKDGPTTPKLSLWFSHLPNCRFLTTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEENEARELGLIYTSGAPLPPGSANPSSPGGQDNNNGALNLQGNRVGGEQNHSYPDSPSGNRSPDEKKIKINVDEDSEDSLDDNMNAEHRTRTSTNNNNTTMPKSSRTPSPNQLVDPTGEVTKSPAPVPSPRIQEESSDESETVLPENLSLPKNTPMSADSTSPMSAEHAYLYTHPYSPYQNGRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQLEEPRSAFSPLVSAFQRNFASQQANRRFLTAPYSGTGYLPTIMRPQSEYPTLPLQPPGGVPDLYSGNTAYRIESALSE
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHcccccccccccccHccHHccccccccccccccccccccccccccccccccccccHcccccccEccccccccEcccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccHHHHcccccccccccccccccccccccHHccccccccccccccccHHHHcccccccEEHHHcccc
Coil and Loop (DISEMBL)
earrkkkeEEEEEEEEKQEeegeekkdgpttpklslwfshlpncrflttvhryqrtpkcarcrnhgvvsalkghkrycrwrdcVCAKCTLIAERQRVMAAQVALRRQQAQEENEARELGliytsgaplppgsanpsspggqdnnngalnlqgnrvggeqnhsypdspsgnrspdekkikinvdedsedslddnmnaehrtrtstnnnnttmpkssrtpspnqlvdptgevtkspapvpspriqeessdesetvlpenlslpkntpmsadstspmsaehaylythpyspyqngrspvdvlrrvfpnrrrgeVETVLQRCKGDVLQAIEMMVYSEqleeprsafspLVSAFQRNFASQQANRrfltapysgtgylptimrpqseyptlplqppggvpdlysgntAYRIESALSE
Flexible Loop (DISEMBL)
earrkkkeeeeeeeeekqeeegeekkdgpttpkLSLWFSHLPNCRFLTTVHRYQrtpkcarcrnhgvvsalkghkrycrWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEENEARELGLIYTSGAPLPPGSANPSSPGGQDNNNGALNLQGNRVGGEQNHsypdspsgnrspdekKIKInvdedsedslddnmnaehrtrtstnnnnttmpkssrtpspnqlvdptgevtkspapvpspriqeessdesetvlpenlslpkntpmsADSTSPMSAEHAYLYTHPyspyqngrspVDVLRRVFPnrrrgevetvlqrcKGDVLQAIEMMVYSEQLEEPRSAFSPLVSAFQRNFASQQANRRFLTAPYSGTGYLPTIMRPQSEYPTLPLQPPGGVPDLYSGNTAYRIESALSE
Low Complexity Region (SEG)
EARRkkkeeeeeeeeekqeeegeekkDGPTTPKLSLWFSHLPNCRFLTTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAErqrvmaaqvalrrqqaqeenearelGLIYTsgaplppgsanpsspggQDNNNGALNLQGNRVGGEQNHSYPDSPSGNRSPDEKKIKINVDEDSEDSLDDNMNAEHrtrtstnnnnttMPKSSRTPSPNQLVDPTGEVTKSPAPVPSPRIQEESSDESETVLPENLSLPKNTPMSADSTSPMSAEHAYLYTHPYSPYQNGRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQLEEPRSAFSPLVSAFQRNFASQQANRRFLTAPYSGTGYLPTIMRPQSEYPTLPLQPPGGVPDLYSGNTAYRIESALSE
Disordered region (IsUnstruct)
*********************************LSLWFSHLPNCRFLTTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVAL******************************************************************************************************************************************************************************AYLYTHPYSPYQNGRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQ**********LVSAFQRNFA***ANRRFLTAPYSGTGYLPTIM***********************************
Disordered Region (DISOPRED)
**********************************************************CARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAA*****************************************************************SPSGNRSPDEKKIKINVD*****************************************************************************************************************************GEVETVLQRCKGDVLQ****************************************************MRPQ*********************TAY********
Disordered Region (DISEMBL)
******************************TPKLSLWFSHLPNCRFLTTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVM***************EARELGLIYTSGAPLPP*********GQDNNNGALNLQGNRVGGE****************EKKIKINVDEDSEDSLDDNMNAEHRTRT*********************VDPTGE*************************PENLSLPK************SAEHAYLYTHPYSPYQNGRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQLEEPRSAFSPLVSAFQRNFASQQANRRFLTAPYSGTGYLPTIMRPQSEYPTLPLQPPGGVPDLYSGNTAYRIESALSE
Disordered Region (DISPRO)
****************************************************YQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEENEARELGLIYTSGA*********************************************************************************************************************************************************************GRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQ*****SAFSPLVSAFQRNFASQQANRRFLTAPYSGTGYLPTIMRPQSEYPTLPLQPPGGVPDLYSGNT*Y*I**ALS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxxxxxxxGPTTPKLSLWFSHLPNCRFLTTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEENEARELGLIYTSGAPLPPGSANPSSPGGQDNNNGALNLQGNRVGGEQNHSYPDSPSGNRSPDEKKIKINVDEDSEDSLDDNMNAEHRTRTSTNNNNTTMPKSSRTPSPNQLVDPTGEVTKSPAPVPSPRIQEESSDESETVLPENLSLPKNTPMSADSTSPMSAEHAYLYTHPYSPYQNGRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQLEEPRSAFSPLVSAFQRNFASQQANRRFLTAPYSGTGYLPTIMRPQSEYPTLPLQPPGGVPDLYSGNTAYRIESALSE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	412	2.2.26 [Sep-21-2011]
Q5UU75	440	Doublesex- and mab-3-rela	yes	N/A	0.696	0.652	0.362	1e-42
Q5VZB9	504	Doublesex- and mab-3-rela	yes	N/A	0.628	0.513	0.399	9e-42
Q8CFG4	490	Doublesex- and mab-3-rela	yes	N/A	0.638	0.536	0.393	2e-39
A4QNP7	437	Doublesex- and mab-3-rela	no	N/A	0.216	0.203	0.775	2e-36
Q2MJB4	437	Doublesex- and mab-3-rela	N/A	N/A	0.216	0.203	0.775	4e-36
A8TSS9	448	Doublesex- and mab-3-rela	N/A	N/A	0.201	0.185	0.819	4e-36
Q2I327	449	Doublesex- and mab-3-rela	N/A	N/A	0.201	0.184	0.819	6e-36
Q76L87	416	Doublesex- and mab-3-rela	N/A	N/A	0.201	0.199	0.819	8e-36
Q4AE28	416	Doublesex- and mab-3-rela	N/A	N/A	0.211	0.209	0.781	2e-35
A6QQ94	535	Doublesex- and mab-3-rela	yes	N/A	0.201	0.155	0.819	2e-35

>sp|Q5UU75|DMTA2_DANRE Doublesex- and mab-3-related transcription factor A2 OS=Danio rerio GN=dmrta2 PE=2 SV=1

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 145/400 (36%), Positives = 192/400 (48%), Gaps = 113/400 (28%)

Query: 52  RYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQE 111
           +Y RTPKCARCRNHGVVSALKGHKRYCRW+DC+CAKCTLIAERQRVMAAQVALRRQQAQE
Sbjct: 52  KYPRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAERQRVMAAQVALRRQQAQE 111

Query: 112 ENEARELGLIYTSGAPLPPGSANPSSPGGQD----------NNNGALNLQGNRVGGEQNH 161
           ENEAREL L+Y +   L   +AN   P  Q+          +N+G  N+Q   +      
Sbjct: 112 ENEARELQLLYGTAEGLALAAANGIIPPRQNYEVFGPVSNESNSGESNIQKFEL------ 165

Query: 162 SYPDSP-SGNRSPDEKKIKINVDEDSEDSLDDNMNAEHRTRTSTNNNNTTMPKSSRTPSP 220
            +P +P  G  +P +   K +V  D+E S+    + + R  + + N +     SS    P
Sbjct: 166 -FPKTPLPGTVTPHQAAGK-SVSTDTE-SVPGMSSPDMRHGSGSENGDRESIVSSPIAKP 222

Query: 221 NQLVDPTGEVT-KSPAPVPSPRIQEESSDESETVLPENLSLPKNTPMSADSTSPMSAEHA 279
             L D  GE T  S +P+ S    +   DE E            +P SA S   M+A   
Sbjct: 223 --LKD--GEETPGSISPIGSDSGSDTDKDEQEP-----------SPSSAASRQ-MNA--- 263

Query: 280 YLYTHPYSPYQNGRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMV-YSEQLEEP 338
                           +D+L RVFPN +R  +E VLQ C  +V+QAIE ++  S Q + P
Sbjct: 264 ----------------IDILTRVFPNHKRSVLELVLQGCGKNVVQAIEQILNNSGQAKGP 307

Query: 339 ---------------------------------RSAFSPL-------------------- 345
                                            RSAFSPL                    
Sbjct: 308 EETWTAERMLQSVQPTMSSTPRPMLPGTMTLSNRSAFSPLQPNAPHFGSDPSTYPLSTHL 367

Query: 346 -VSAFQRNFASQQANRRFLTAPYSGTGYLPTI-MRPQSEY 383
            ++  +  +++      F+ APYS TG +PT+  RP  +Y
Sbjct: 368 GLNPLRLAYSAHSRGLAFM-APYSTTGLMPTLGFRPPMDY 406

May be involved in sexual development.
Danio rerio (taxid: 7955)

>sp|Q5VZB9|DMRTA_HUMAN Doublesex- and mab-3-related transcription factor A1 OS=Homo sapiens GN=DMRTA1 PE=2 SV=1

 Score =  171 bits (433), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 117/293 (39%), Positives = 155/293 (52%), Gaps = 34/293 (11%)

Query: 53  YQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEE 112
           Y RTPKCARCRNHGVVSALKGHKR+CRWRDC CAKCTLIAERQRVMAAQVALRRQQAQEE
Sbjct: 91  YPRTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAERQRVMAAQVALRRQQAQEE 150

Query: 113 NEARELGLIYTSGAPLPPGSA---------NPSSPGGQDNNNGALNLQGNRVGGEQNHSY 163
           +EAR L  +  SG   PPG           NP S GG             +  G    ++
Sbjct: 151 SEARGLQRLLCSGLSWPPGGRASGGGGRAENPQSTGGPAAGAALGLGALRQASGSATPAF 210

Query: 164 ----PDSPSGNRSPDEKKIKINVDEDSEDSLDDNMNAEHRTRT-STNNNNTTMPKSSRTP 218
                D P   +   E K      E  ++  ++ ++  H+    S++ +N  + K S   
Sbjct: 211 EVFQQDYPEEKQEQKESKC-----ESCQNGQEELISKSHQLYLGSSSRSNGVIGKQS--- 262

Query: 219 SPNQLVDPTGEVTKSPAPVPSPRIQEESSDESETVLPENLSLPK-NTPMSADSTSPMSAE 277
               +     E +  P  + SP   E+S  E     P +LS     +   ++    ++A 
Sbjct: 263 ----IGSSISEYSNKPDSILSPHPGEQSGGEES---PRSLSSSDLESGNESEWVKDLTAT 315

Query: 278 HAYLYTHPYSPYQNGRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMV 330
            A L T    P    R P+D+L ++FPN RR  +E +L+ CKGDV+QAIE ++
Sbjct: 316 KASLPTVSSRP----RDPLDILTKIFPNYRRSRLEGILRFCKGDVVQAIEQVL 364

May be involved in sexual development.

Homo sapiens (taxid: 9606)

>sp|Q8CFG4|DMRTA_MOUSE Doublesex- and mab-3-related transcription factor A1 OS=Mus musculus GN=Dmrta1 PE=2 SV=1

 Score =  163 bits (413), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/287 (39%), Positives = 149/287 (51%), Gaps = 24/287 (8%)

Query: 53  YQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEE 112
           Y RTPKCARCRNHGVVSALKGHKR+CRWRDC CAKCTLIAERQRVMAAQVALRRQQAQEE
Sbjct: 80  YPRTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAERQRVMAAQVALRRQQAQEE 139

Query: 113 NEARELG-LIY----TSGAPLPPGSANPSSPGGQDNNN----GALNLQGNRVGGEQNHSY 163
           +EAR L  L+Y     SGA    GS    SP  Q  NN      L    +R  G ++   
Sbjct: 140 SEARGLHRLLYQGSSGSGAQASGGSGRTESP--QVLNNPMAVAVLGAGASRHPGSRSVPT 197

Query: 164 PDSPSGNRSPDEKKIKINVDEDSEDSLDDNMNAEHRTRTSTNNNNTTMPKSSRTPSPNQL 223
            +    + +  +++ K    E  +   ++ ++  H     ++  N T+ K     S  + 
Sbjct: 198 FEVFQQDYADRKQEPKQRNCESCQSRQEEPVSNTHHHSLGSSKGNVTVEKQGFMSSIPEH 257

Query: 224 VDPTGEVTKSPAPVPSPRIQEESSDESETVLPENLSLPKNTPMSADSTSPMSAEHAYLYT 283
            D +  +       P P  Q    D   +    +L     +  + D      A  A L T
Sbjct: 258 PDKSTIILS-----PCPTDQSGGEDSPRSFSSSDLESGNESEWARDYI----ATRASLST 308

Query: 284 HPYSPYQNGRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMV 330
               P    R P+ +L R+FP  +   +E +LQ CKGDV+QAIE ++
Sbjct: 309 VTSRP----RDPLGILTRIFPGYKHSRLEGILQFCKGDVVQAIEQIL 351

May be involved in sexual development.

Mus musculus (taxid: 10090)

>sp|A4QNP7|DMTA2_XENTR Doublesex- and mab-3-related transcription factor A2 OS=Xenopus tropicalis GN=dmrta2 PE=2 SV=1

 Score =  153 bits (387), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/89 (77%), Positives = 75/89 (84%)

Query: 46  FLTTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALR 105
            L    +Y RTPKCARCRNHGVVSALKGHKRYCRW+DC+CAKCTLIAERQRVMAAQVALR
Sbjct: 36  LLRAAEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAERQRVMAAQVALR 95

Query: 106 RQQAQEENEARELGLIYTSGAPLPPGSAN 134
           RQQAQEENEAREL L+Y +   L   +AN
Sbjct: 96  RQQAQEENEARELQLLYGTAEGLALAAAN 124

May be involved in sexual development.

Xenopus tropicalis (taxid: 8364)

>sp|Q2MJB4|DMTA2_XENLA Doublesex- and mab-3-related transcription factor A2 OS=Xenopus laevis GN=dmrta2 PE=2 SV=1

 Score =  152 bits (385), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 69/89 (77%), Positives = 75/89 (84%)

Query: 46  FLTTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALR 105
            L    +Y RTPKCARCRNHGVVSALKGHKRYCRW+DC+CAKCTLIAERQRVMAAQVALR
Sbjct: 36  LLRAAEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAERQRVMAAQVALR 95

Query: 106 RQQAQEENEARELGLIYTSGAPLPPGSAN 134
           RQQAQEENEAREL L+Y +   L   +AN
Sbjct: 96  RQQAQEENEARELQLLYGTAEGLALAAAN 124

May be involved in sexual development.

Xenopus laevis (taxid: 8355)

>sp|A8TSS9|DMTA2_MONAL Doublesex- and mab-3-related transcription factor A2 OS=Monopterus albus GN=dmrta2 PE=2 SV=1

 Score =  152 bits (385), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 68/83 (81%), Positives = 74/83 (89%)

Query: 52  RYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQE 111
           +Y RTPKCARCRNHGVVSALKGHKRYCRW+DC+CAKCTLIAERQRVMAAQVALRRQQAQE
Sbjct: 50  KYPRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAERQRVMAAQVALRRQQAQE 109

Query: 112 ENEARELGLIYTSGAPLPPGSAN 134
           ENEAREL L+Y +   L   +AN
Sbjct: 110 ENEARELQLLYGTAEGLALAAAN 132

May be involved in sexual development.

Monopterus albus (taxid: 43700)

>sp|Q2I327|DMTA2_XIPMA Doublesex- and mab-3-related transcription factor A2 OS=Xiphophorus maculatus GN=dmrta2 PE=2 SV=1

 Score =  152 bits (383), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 68/83 (81%), Positives = 74/83 (89%)

Query: 52  RYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQE 111
           +Y RTPKCARCRNHGVVSALKGHKRYCRW+DC+CAKCTLIAERQRVMAAQVALRRQQAQE
Sbjct: 50  KYPRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAERQRVMAAQVALRRQQAQE 109

Query: 112 ENEARELGLIYTSGAPLPPGSAN 134
           ENEAREL L+Y +   L   +AN
Sbjct: 110 ENEARELQLLYGTAEGLALAAAN 132

May be involved in sexual development.

Xiphophorus maculatus (taxid: 8083)

>sp|Q76L87|DMTA2_ORYLA Doublesex- and mab-3-related transcription factor A2 OS=Oryzias latipes GN=dmrta2 PE=3 SV=1

 Score =  151 bits (382), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 68/83 (81%), Positives = 74/83 (89%)

Query: 52  RYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQE 111
           +Y RTPKCARCRNHGVVSALKGHKRYCRW+DC+CAKCTLIAERQRVMAAQVALRRQQAQE
Sbjct: 18  KYPRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAERQRVMAAQVALRRQQAQE 77

Query: 112 ENEARELGLIYTSGAPLPPGSAN 134
           ENEAREL L+Y +   L   +AN
Sbjct: 78  ENEARELQLLYGTAEGLALAAAN 100

May be involved in sexual development.

Oryzias latipes (taxid: 8090)

>sp|Q4AE28|DMTA2_TAKRU Doublesex- and mab-3-related transcription factor A2 OS=Takifugu rubripes GN=dmrta2 PE=2 SV=1

 Score =  150 bits (379), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/87 (78%), Positives = 74/87 (85%)

Query: 52  RYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQE 111
           +Y RTPKCARCRNHGVVSALKGHKRYCRW+DC+CAKCTLIAERQRVMAAQVALRRQQAQE
Sbjct: 18  KYPRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAERQRVMAAQVALRRQQAQE 77

Query: 112 ENEARELGLIYTSGAPLPPGSANPSSP 138
           ENE REL L+Y +   L   +AN   P
Sbjct: 78  ENEVRELQLLYGTAEGLALAAANGIIP 104

May be involved in sexual development.

Takifugu rubripes (taxid: 31033)

>sp|A6QQ94|DMTA2_BOVIN Doublesex- and mab-3-related transcription factor A2 OS=Bos taurus GN=DMRTA2 PE=2 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/83 (81%), Positives = 74/83 (89%)

Query: 52  RYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQE 111
           +Y RTPKCARCRNHGVVSALKGHKRYCRW+DC+CAKCTLIAERQRVMAAQVALRRQQAQE
Sbjct: 62  KYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQAQE 121

Query: 112 ENEARELGLIYTSGAPLPPGSAN 134
           ENEAREL L+Y +   L   +AN
Sbjct: 122 ENEARELQLLYGTAEGLALAAAN 144

May be involved in sexual development.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
91087421	379	PREDICTED: similar to doublesex-Mab rela	0.796	0.865	0.464	6e-70
347963810	443	AGAP000431-PA [Anopheles gambiae str. PE	0.766	0.713	0.406	5e-56
328698070	396	PREDICTED: doublesex- and mab-3-related	0.589	0.613	0.451	3e-54
321473901	623	DMRT-99B-like protein [Daphnia pulex]	0.723	0.478	0.388	3e-45
432919032	412	PREDICTED: doublesex- and mab-3-related	0.728	0.728	0.364	4e-44
301068491	369	DMRT-like protein [Azumapecten farreri]	0.563	0.628	0.413	6e-43
264688590	425	dsx and mab-3 related transcription fact	0.597	0.578	0.422	7e-43
126334213	492	PREDICTED: doublesex- and mab-3-related	0.766	0.642	0.388	9e-43
15216289	415	OlaDMRT4 [Oryzias latipes]	0.737	0.732	0.352	2e-42
291229056	461	PREDICTED: doublesex- and mab-3-related	0.587	0.524	0.381	2e-42

>gi|91087421|ref|XP_975675.1| PREDICTED: similar to doublesex-Mab related 99B CG15504-PA [Tribolium castaneum] gi|270010630|gb|EFA07078.1| hypothetical protein TcasGA2_TC010058 [Tribolium castaneum]

 Score =  270 bits (691), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 172/370 (46%), Positives = 218/370 (58%), Gaps = 42/370 (11%)

Query: 41  LPNCRFLTTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAA 100
           +P   FL    RYQRTPKCARCRNHGVVSALKGHKRYCRWRDC CAKCTLIAERQRVMAA
Sbjct: 23  IPPAFFLRASERYQRTPKCARCRNHGVVSALKGHKRYCRWRDCNCAKCTLIAERQRVMAA 82

Query: 101 QVALRRQQAQEENEARELGLIYTSGAPL---PPGSANPSSPGGQDNNNGALNLQGNRVGG 157
           QVALRRQQAQEENEARELG+++ + A +    PG   P+ P  Q+++ G   L       
Sbjct: 83  QVALRRQQAQEENEARELGILFPTPAGVVADTPGVTAPAIP--QNSDVGISQLMQRNTFT 140

Query: 158 EQNHSYPDSPSGNRSPDEKKIKINVDEDSEDSLDDNMNAEHRTRTSTNNNNTTMPKSSRT 217
             + S P SP+       K+ +INV++ S +  D       ++R S+          + +
Sbjct: 141 ASDSSEPSSPTS------KRPRINVEDCSLEGSDSEPEDLKKSRQSSPVPAPAPSAPTPS 194

Query: 218 PSPNQLVDPTGEVTKSPAPVPSPRIQEESSDESETVLPENLSLPKNTPMSADSTSPMSAE 277
           P P    DP  +V            +E++  E+    PENLSL K    S+  T P   +
Sbjct: 195 PEPQTSPDPDLDV------------EEDTQSEA----PENLSLKKP---SSPETPPQPTQ 235

Query: 278 HAYLYTH----PYSP-YQNGRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVY- 331
           +   Y      P+ P Y   RSP+DVL RVFP +RR +VE +LQRCKGDV+QA+EMMV  
Sbjct: 236 NFIPYQQFAFPPFQPQYPAQRSPIDVLMRVFPGKRRSDVEALLQRCKGDVVQAMEMMVSG 295

Query: 332 SEQLEEPRSAFSPLVSAFQRNFASQQANRRFLTAPYSGTGYLPTIMRPQSEYPTLPLQPP 391
           S +   P SAFSPL      NF     +RRFL+APY+GTGYLPT++RP  +Y    L   
Sbjct: 296 SHEDATPPSAFSPL--GPPTNFHRFSPSRRFLSAPYAGTGYLPTVIRPPPDY----LSMV 349

Query: 392 GGVPDLYSGN 401
           G V D+YS +
Sbjct: 350 GSVHDIYSSD 359

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347963810|ref|XP_310668.5| AGAP000431-PA [Anopheles gambiae str. PEST] gi|333467024|gb|EAA06773.5| AGAP000431-PA [Anopheles gambiae str. PEST]

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 165/406 (40%), Positives = 216/406 (53%), Gaps = 90/406 (22%)

Query: 41  LPNCRFLTTV-HRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMA 99
           LP   FL     RYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMA
Sbjct: 22  LPPAFFLRAASERYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMA 81

Query: 100 AQVALRRQQAQEENEARELGLIYTS--------------------------GAPLPPGSA 133
           AQVALRRQQAQEENE R+LGL+Y +                          G P PP   
Sbjct: 82  AQVALRRQQAQEENEVRDLGLLYGTTGVHGVGQTPASDSVGSVQSVGQFHGGIPSPP--- 138

Query: 134 NPSSPGGQDNNNGALNLQGN--RVGGEQNHS-YPDSPSGNRSPDEKKIKINVDEDSEDSL 190
           N +  GG  ++  + +   +  R+  E  HS Y  + S   SP  K+ +I+ + D E + 
Sbjct: 139 NDAESGGTHHSYTSADADTDVQRLRSEHMHSAYSPNRSEPDSPGPKRQRISTETDHE-TE 197

Query: 191 DDNMNAEHRTRTSTNNNNTTMPKSSRTPSPNQLVDPTGEVTKSPAPVPSPRIQEESSDES 250
            ++  +  R ++S      ++P   ++PS              P   P   +  +S+ + 
Sbjct: 198 SESSPSSPRHKSSL----FSLPLDKQSPS-----------QTGPPSSPESDLDVDSTPD- 241

Query: 251 ETVLPENLSLPKN-----TPMSADSTSPMSAEHAYL-YTHP---YSPYQNG--------- 292
           +++ PENLSL K+     T  +A      +    +L Y  P    + YQ           
Sbjct: 242 DSIAPENLSLKKDPANVYTKPAATLVPVTNGGTGFLPYNQPPAAATQYQQALGVSASQAS 301

Query: 293 --RSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIE-MMVYSEQLEEP----------- 338
             RSPVDVL RVFPNRRR EVE +LQR +GDV+QA+E M+   + L  P           
Sbjct: 302 SQRSPVDVLLRVFPNRRRSEVELLLQRYRGDVVQAMEAMLCGDDALHSPISVPTPSPSFA 361

Query: 339 -RSAFSPLVSA-------FQRNFASQQANRRFLTAPYSGTGYLPTI 376
            +SAFSPL+ +        + +F  Q   +RFL+APY+GTGYLPTI
Sbjct: 362 VKSAFSPLMPSGTFSSPTVRYSFLQQAHTKRFLSAPYTGTGYLPTI 407

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328698070|ref|XP_001949339.2| PREDICTED: doublesex- and mab-3-related transcription factor A2-like [Acyrthosiphon pisum]

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 145/321 (45%), Positives = 174/321 (54%), Gaps = 78/321 (24%)

Query: 52  RYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQE 111
           RYQRTPKCARCRNHGVVSALKGHKRYCRWRDC CAKCTLIAERQRVMAAQVALRRQQAQE
Sbjct: 35  RYQRTPKCARCRNHGVVSALKGHKRYCRWRDCACAKCTLIAERQRVMAAQVALRRQQAQE 94

Query: 112 ENEARELGLIYTSGAPLPPGSANPSSPGGQDNNNGALNLQGNRVGGEQNHSYPDSPSGNR 171
           ENEARELGLIY                                       S   S +   
Sbjct: 95  ENEARELGLIYPPP------------------------------------SSSSSAAARS 118

Query: 172 SPDEKKIKINVDEDSEDSLDDNMNAEHRTRTSTNNNNTTMPKSSRTPSPNQLVDPTGEVT 231
           SPDEK+ +++ +E        ++NA+H     T + NT    SS +P+    V  T    
Sbjct: 119 SPDEKRARLSSEE--------SINAKHDQTIGTQDQNTRSRSSSVSPNAPTQVTSTQFAA 170

Query: 232 KSPAPVPSPRIQEESSDESETVLPENLSLPKNTPMSADSTSPMSAEHAYL-YTHP-YSPY 289
           K  +P    R + ES++ S    PENLSLPK      DS+SP   + + L   +P +S +
Sbjct: 171 KFNSPT---RSEVESNESSNEAAPENLSLPKRR----DSSSPTEPDRSRLPSNYPNFSSF 223

Query: 290 ----------------QNGRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSE 333
                             GRS VDVLRRVFP +RR ++E VLQRC GDVL AIE+M+ S 
Sbjct: 224 LETSAAAAAAAAAGVNSAGRSAVDVLRRVFPYKRRVDIENVLQRCNGDVLHAIELMMCSS 283

Query: 334 ---------QLEEPRSAFSPL 345
                     L +  SAFSP+
Sbjct: 284 DQLPTMGHPSLMDSHSAFSPM 304

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321473901|gb|EFX84867.1| DMRT-99B-like protein [Daphnia pulex]

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/345 (38%), Positives = 169/345 (48%), Gaps = 47/345 (13%)

Query: 46  FLTTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALR 105
            L    RYQRTPKCARCRNHGVVSALKGHKRYCRWRDC CAKCTLIAERQRVMAAQVALR
Sbjct: 89  LLRASERYQRTPKCARCRNHGVVSALKGHKRYCRWRDCACAKCTLIAERQRVMAAQVALR 148

Query: 106 RQQAQEENEARELGLIYT---SGAPLPPGSANPSSPGGQDNNNGALNLQGNRVGGEQN-- 160
           RQQAQEENEARELGL+YT   SG       A P  P GQD+   +++ +    GG ++  
Sbjct: 149 RQQAQEENEARELGLLYTVPSSGMNNMGQQAGPQGPAGQDSPTRSMSDRSGSGGGRKSAN 208

Query: 161 --HSYPDSPSGNRSPDEKKIKINV-----------------------DEDSEDSLDDNMN 195
              S  DS + N   +    ++N                        DE S       MN
Sbjct: 209 RAESGCDSSANNGYDNSVNKRLNYSGREAGQHPPGPLPPICPTGSERDESSHQHYHPYMN 268

Query: 196 AEHRTRTST-------NNNNTTMPKSSRTPSPNQLVDPTGEVTKSPAPVPSPRIQEESSD 248
            +     +T        N  + M  +S +P   QL+D   +          P      +D
Sbjct: 269 RKGDGLLNTAEPLSPPTNRASKMSNNSLSPKSPQLMDSDSDDAGDSDHNSHP------TD 322

Query: 249 ESETVLPENLSLPKNTPMSADSTSPMSAEHAYLYTHPYSPYQNGRSPVDVLRRVFPNRRR 308
           E E +LP +    +     AD     SA  A           + R P+D L R+FP  +R
Sbjct: 323 EPELLLPSD----RTKFELADVDDNGSALEAASGGGSEPEAASKRVPLDTLARLFPQTKR 378

Query: 309 GEVETVLQRCKGDVLQAIEMMVYSEQLEEPRSAFSPLVSAFQRNF 353
             +++ L RC GDVL+AIE +VY     +P       V+A + N 
Sbjct: 379 ATLKSTLDRCDGDVLRAIEQLVYHNNNPQPEGNNGSTVNANEANL 423

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432919032|ref|XP_004079711.1| PREDICTED: doublesex- and mab-3-related transcription factor A1-like [Oryzias latipes]

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 142/390 (36%), Positives = 197/390 (50%), Gaps = 90/390 (23%)

Query: 53  YQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEE 112
           Y RTPKCARCRNHGVVSALKGHKR+CRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEE
Sbjct: 46  YPRTPKCARCRNHGVVSALKGHKRFCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEE 105

Query: 113 NEARELGLIY-TSGAPLPPGSANPSSPGGQ--DNNNGALNLQGNRVGGEQNHSYPDSPSG 169
           +EAR+L L+Y  SG  +P GS   S  G +   +++   N+    V G QN         
Sbjct: 106 SEARDLRLLYPASGIGVPAGSPQGSPVGAEVPASSSNPANVSCFDVFGAQNPKE------ 159

Query: 170 NRSPDEKKIKINVDEDSEDSLDDNMNAEHRTRTSTNNNNTTMPKSSRTPSP--NQLVDPT 227
               D+K  K N +      +   + A H  R  +       P   R PSP  +    P+
Sbjct: 160 ----DDKVHKYNFN---NGYMGRPLFAPHGARVPS-------PSDGREPSPRRDSAASPS 205

Query: 228 GEVTKSPAPVPSPRIQEESSDESETVLPENLSLPKNTPMSADSTSPMSAEHAYLYTHPYS 287
            + +KSP+P      ++  S+ + +        P+    S+D  S   +E A  Y HP  
Sbjct: 206 AD-SKSPSPA-----RDRLSNHTPS--------PQRPASSSDPESGNESEKAKEY-HPE- 249

Query: 288 PYQNGRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQ------------- 334
                R P D++ R+FP+++R  +ET+++ CKGD++++IE+ + S+              
Sbjct: 250 -----RDPTDIMARIFPHQKRDTLETMVKTCKGDIVKSIELALSSKDSSGASPSPGALQG 304

Query: 335 -LEEP------RSAFSPL-------------------VSAFQRNFASQQANRRFLTAPYS 368
            L  P      +SAFSPL                   VS  +  ++S         +PY 
Sbjct: 305 ALRSPVGAPGIKSAFSPLHSPSIPAAEGLYGLSPRLGVSPLRLAYSSAGGGVAGFMSPYV 364

Query: 369 GTGYLPTI-MRPQSEYPTLPLQPPGGVPDL 397
            +G +P + +RP    P  P   PG + DL
Sbjct: 365 TSGLMPLLTLRP----PLDPHAFPGVIRDL 390

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301068491|gb|ADK55063.1| DMRT-like protein [Azumapecten farreri]

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 122/295 (41%), Positives = 153/295 (51%), Gaps = 63/295 (21%)

Query: 43  NCRFLTTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQV 102
           N  F+    RY RTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQV
Sbjct: 12  NGMFMRAADRYPRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQV 71

Query: 103 ALRRQQAQEENEARELGLIYTSGAPLPPGSANPSSPGGQDNNNGALNLQGNRVG-GEQNH 161
           ALRRQQAQEENEARELG++Y                 GQ   +G L +    V    +  
Sbjct: 72  ALRRQQAQEENEARELGMLY-----------------GQ---SGLLQINPETVNMFPEAK 111

Query: 162 SYPDSPSGNRSPDE----KKIKINVDEDSEDSLDDNMNAEHRTRTSTNNNNTTMPKSSRT 217
            Y D+     +PD+    KK K++ D   E  LD    A   +R ST             
Sbjct: 112 QYLDTSKVREAPDDYPASKKQKLD-DPREEFQLD---AARPDSRPST------------- 154

Query: 218 PSPNQLVDPTGEVTKSPAPVPSPRIQEESSDESETVLPENLSLPKNTPMSADSTSPMSAE 277
             P  +  P      + +P PSPR  +  S             P++    +DS SP    
Sbjct: 155 --PEGVERPRSPADSAGSPEPSPRSCDPPS-------------PRSPASKSDSKSPFDES 199

Query: 278 HAYLYTHPYSPYQNGRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYS 332
               Y        N R P+++L R+FP+ +R  ++ +LQ C GDV+Q IE ++ S
Sbjct: 200 ALAHYGG------NKRQPIEMLSRIFPHMKRSVLQLILQGCGGDVVQCIEQILNS 248

Source: Azumapecten farreri

Species: Azumapecten farreri

Genus: Azumapecten

Family: Pectinidae

Order: Pectinoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|264688590|gb|ACY74335.1| dsx and mab-3 related transcription factor 4 [Cynoglossus semilaevis]

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 120/284 (42%), Positives = 168/284 (59%), Gaps = 38/284 (13%)

Query: 53  YQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEE 112
           Y RTPKCARCRNHGVVSALKGHKR+CRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEE
Sbjct: 47  YPRTPKCARCRNHGVVSALKGHKRFCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEE 106

Query: 113 NEARELGLIYTSGAPLPPGSANP-SSPGGQDNNNGALNLQGNRVGGEQNHSYPDSPSGNR 171
           +EAREL L+Y SG+ +   +  P  SPGG       L    +        S+    + N+
Sbjct: 107 SEARELRLLY-SGSGIGGEAVVPHGSPGGS-----GLAAPASSTPSAVGASFDVYRAENQ 160

Query: 172 SPDEKKIKINVDEDSEDSLDDNMNAEHRTRTSTNNNNT-TMPKSSRTPSPNQLVDPTGEV 230
             D+K  K N+       +  ++ A H TR  + +  T   PK S  P    LVD     
Sbjct: 161 KDDDKINKFNL---YNGFMGRSLFAPHGTRLPSPSEKTECSPKDSNAP----LVDD---- 209

Query: 231 TKSPAPVPSPRIQEESSDESETVLPENLSLPKNTPMSADSTSPMSAEHAYLYTHPYSPYQ 290
           + SP+PV      + SSD +++        P+ +P S+D  S    E +       SP  
Sbjct: 210 SVSPSPV-----FDLSSDHTDS--------PQRSPSSSDPESGSETEKST-----DSPSL 251

Query: 291 NGRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQ 334
             R P D++ ++FP+++R  +E++++ CKGD++++IE+++ S++
Sbjct: 252 E-RDPTDIMAKIFPHQKRDTLESMVRTCKGDLVKSIELVLSSKE 294

Source: Cynoglossus semilaevis

Species: Cynoglossus semilaevis

Genus: Cynoglossus

Family: Cynoglossidae

Order: Pleuronectiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|126334213|ref|XP_001374014.1| PREDICTED: doublesex- and mab-3-related transcription factor A1-like [Monodelphis domestica]

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 194/368 (52%), Gaps = 52/368 (14%)

Query: 53  YQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEE 112
           Y RTPKCARCRNHGVVSALKGHKR+CRWRDC CAKCTLIAERQRVMAAQVALRRQQAQEE
Sbjct: 83  YPRTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAERQRVMAAQVALRRQQAQEE 142

Query: 113 NEARELG-LIY---TSGAPLPPGSA----NPSSPGGQDNNNGALNLQGNRVGGEQNHSY- 163
           NEAR L  L+Y    SG+    G A    +P++ GG     G LNL    +G  +   + 
Sbjct: 143 NEARGLQRLLYPGQASGSRGAGGCAGSEISPAAGGGSGTAEG-LNLGTGALGSRRAVPFE 201

Query: 164 ---PDSPSGNRSPDEKKIKINVDEDSEDSLDDNMNAEHRTRTSTNNNNTTMPKSSRTPSP 220
              PD     R  D K  K+       + LD  +   H+    +  +  T       PS 
Sbjct: 202 IFHPDYQEEKR--DSKVQKVG---SYYNGLDGPITTSHQLSLRSPESIGTNGDDEEKPSG 256

Query: 221 NQLVDPTGEVTKSPAPVPSPRIQEESSDESETVLPENLSLPKNTPMSADSTSPMSAEHAY 280
           ++  D   E  +SP P       EE S+ +E+  P +LS   ++ M + + S  + + A 
Sbjct: 257 SENSDKE-ENIQSPHP-------EEQSEGTES--PRSLS---SSDMESGNESEWAKDFAA 303

Query: 281 LYTHPYSPYQNGRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMV----YSEQLE 336
             ++  +     R P+D+L +VFP+ +R  +E++LQ CKGDV+QAIE ++    + +   
Sbjct: 304 ARSNLPTISSRPRDPLDILTKVFPSYKRSRLESILQYCKGDVVQAIEQVLNGKEHKQDTV 363

Query: 337 EPRSAFSPLVSAFQR-NFASQQANRRFLTAPYSGTGYL--PTIMRPQSEYPTLPLQPPGG 393
           +  ++    ++AFQR NF          T    G G L   +   P     T    P GG
Sbjct: 364 DLANSVGTELTAFQRTNF----------TLAGLGIGTLGNKSAFSPLHTSST----PFGG 409

Query: 394 VPDLYSGN 401
            P+LYS N
Sbjct: 410 DPNLYSLN 417

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|15216289|dbj|BAB63259.1| OlaDMRT4 [Oryzias latipes]

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 137/389 (35%), Positives = 189/389 (48%), Gaps = 85/389 (21%)

Query: 53  YQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEE 112
           Y RTPKCARCRNHGVVSALKGHKR+CRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEE
Sbjct: 46  YPRTPKCARCRNHGVVSALKGHKRFCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEE 105

Query: 113 NEARELGLIY-TSGAPLPPGSANPSSPGGQDNNNGALNLQGNRVGGEQNHSYPDSPSGNR 171
           +EAR+L L+Y  SG  +P GS                  QG+ VG E        P+ + 
Sbjct: 106 SEARDLRLLYPASGIGVPAGSP-----------------QGSPVGAEV-------PASSS 141

Query: 172 SPDEKKIKINVDEDSEDSLDDNMNAEHRTRTSTNNNNTTMPKSSRTPSPNQLVDPTGEVT 231
           +P       +V        DD ++ ++             P  +R PSP+   +P+    
Sbjct: 142 NPSTVPC-FDVFGAQNPKEDDKVH-KYNFYNGYMGRPLFAPHGARLPSPSDGREPSPRRD 199

Query: 232 KSPAPVPSPRIQEESSDESETVLPENLSLPKNTPMSADSTSPMSAEHAYLYTHPYSPYQN 291
            +     SP    +S   +   L  +   P+    S+D  S   +E A  Y HP      
Sbjct: 200 SA----ASPSADSKSPSPARDRLSNHTPSPQRPASSSDPESGNESEKAKEY-HPE----- 249

Query: 292 GRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQ--------------LEE 337
            R P D++ R+FP+++R  +ET+++ CKGD++++IE+ + S+               L  
Sbjct: 250 -RDPTDIMARIFPHQKRDTLETMVKTCKGDIVKSIELALSSKDSSGASPSPGALQGALRS 308

Query: 338 P---------RSAFSPL-------------------VSAFQRNFASQQANRRFLTAPYSG 369
           P         +SAFSPL                   VS  +  ++S         +PY  
Sbjct: 309 PVGAPGAPGIKSAFSPLHSPSIPAAEGLYGLSPRLGVSPLRLAYSSAGGGVAGFMSPYVT 368

Query: 370 TGYLPTI-MRPQSEYPTLPLQPPGGVPDL 397
           +G +P + +RP    P  P   PG + DL
Sbjct: 369 SGLMPLLTLRP----PLDPHAFPGVIRDL 393

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291229056|ref|XP_002734495.1| PREDICTED: doublesex- and mab-3-related transcription factor A2-like [Saccoglossus kowalevskii]

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 158/307 (51%), Gaps = 65/307 (21%)

Query: 53  YQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEE 112
           Y RTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEE
Sbjct: 41  YPRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEE 100

Query: 113 NEARELGLIYTSGAPLPPGSANPSSPGGQDNNNGALNLQGNRVGGEQNHSYPDSPSGN-- 170
           NEARELG +Y                G  ++   A+N        +   SY  +P  +  
Sbjct: 101 NEARELGFLY----------------GNAESAIFAMNASSAAATSKTYGSYRATPPNDTD 144

Query: 171 -RSPDEKKIKINVDEDSEDSLDDNMNAEHRTRTSTNNNNTTMPKSSRTPSPNQLVDPTGE 229
             SP+ K+ K++++    +S             +T +++ T  +  R+ SP      +G 
Sbjct: 145 PMSPEMKRQKVDLNFPGVNS-------------ATTSSSITADR--RSASPASTASDSGV 189

Query: 230 VTKSPAPVPSPRIQEESSDESETVLPENLSLPKNTPMSADSTSPMSAEH----------- 278
           +  SP  +PS      ++  S  + P     PK  P S  S   + ++H           
Sbjct: 190 I--SPGIIPSSSADARTASASPDMTPVT---PKEEPHSPTSEDDVKSDHYSARDENSPRS 244

Query: 279 --------AYLYTHPYSPYQNG-------RSPVDVLRRVFPNRRRGEVETVLQRCKGDVL 323
                        H  S   N        RSP+++L  VFP+++R  ++ +LQ C GDV+
Sbjct: 245 SPSLPPPPPRSSKHHESSIFNSTDSSRAHRSPIEILASVFPSQKRSVLQLILQGCNGDVV 304

Query: 324 QAIEMMV 330
           QAIE ++
Sbjct: 305 QAIEQVL 311

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
FB|FBgn0039683	510	dmrt99B "doublesex-Mab related	0.303	0.245	0.455	4.2e-40
UNIPROTKB|I3L9S3	535	DMRTA2 "Uncharacterized protei	0.114	0.087	0.829	1.8e-30
UNIPROTKB|A6QQ94	535	DMRTA2 "Doublesex- and mab-3-r	0.114	0.087	0.829	2.3e-30
UNIPROTKB|Q96SC8	542	DMRTA2 "Doublesex- and mab-3-r	0.114	0.086	0.829	1.4e-29
RGD|1308173	372	Dmrta2 "DMRT-like family A2" [	0.114	0.126	0.829	7.2e-29
MGI|MGI:2653629	531	Dmrta2 "doublesex and mab-3 re	0.114	0.088	0.829	1.3e-28
RGD|1309796	488	Dmrta1 "DMRT-like family A1" [	0.099	0.084	0.926	5e-27
UNIPROTKB|Q5VZB9	504	DMRTA1 "Doublesex- and mab-3-r	0.099	0.081	0.926	9.7e-27
UNIPROTKB|F1P9K2	499	DMRTA1 "Uncharacterized protei	0.099	0.082	0.926	5e-26
UNIPROTKB|F1SNK8	497	DMRTA1 "Uncharacterized protei	0.099	0.082	0.926	6.2e-26

FB|FBgn0039683 dmrt99B "doublesex-Mab related 99B" [Drosophila melanogaster (taxid:7227)]

 Score = 259 (96.2 bits), Expect = 4.2e-40, Sum P(3) = 4.2e-40
 Identities = 61/134 (45%), Positives = 66/134 (49%)

Query:    41 LPNCRFLTTV-HRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAEXXXXXX 99
             LP   FL     RYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAE      
Sbjct:    22 LPPAFFLRAASERYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMA 81

Query:   100 XXXXXXXXXXXXXXXXXXXGLIYTXXXXXXXXXXXXXXXXXQDNNNGALNLQGNRVGGE- 158
                                GL+YT                   N++G+    G+  GG  
Sbjct:    82 AQVALRRQQAQEENEARELGLLYTSVPGQQNGSDSATPTPHSPNHSGS---GGSGSGGSG 138

Query:   159 QN---HS-YPDSPS 168
             QN   H   P  PS
Sbjct:   139 QNGVFHGGIPSPPS 152

GO:0005634 "nucleus" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007548 "sex differentiation" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|I3L9S3 DMRTA2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 233 (87.1 bits), Expect = 1.8e-30, Sum P(3) = 1.8e-30
 Identities = 39/47 (82%), Positives = 42/47 (89%)

Query:    47 LTTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAE 93
             L    +Y RTPKCARCRNHGVVSALKGHKRYCRW+DC+CAKCTLIAE
Sbjct:    57 LRAAEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAE 103

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0007548 "sex differentiation" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|A6QQ94 DMRTA2 "Doublesex- and mab-3-related transcription factor A2" [Bos taurus (taxid:9913)]

 Score = 233 (87.1 bits), Expect = 2.3e-30, Sum P(3) = 2.3e-30
 Identities = 39/47 (82%), Positives = 42/47 (89%)

Query:    47 LTTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAE 93
             L    +Y RTPKCARCRNHGVVSALKGHKRYCRW+DC+CAKCTLIAE
Sbjct:    57 LRAAEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAE 103

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0007548 "sex differentiation" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q96SC8 DMRTA2 "Doublesex- and mab-3-related transcription factor A2" [Homo sapiens (taxid:9606)]

 Score = 233 (87.1 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
 Identities = 39/47 (82%), Positives = 42/47 (89%)

Query:    47 LTTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAE 93
             L    +Y RTPKCARCRNHGVVSALKGHKRYCRW+DC+CAKCTLIAE
Sbjct:    58 LRAAEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAE 104

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007548 "sex differentiation" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1308173 Dmrta2 "DMRT-like family A2" [Rattus norvegicus (taxid:10116)]

 Score = 233 (87.1 bits), Expect = 7.2e-29, Sum P(2) = 7.2e-29
 Identities = 39/47 (82%), Positives = 42/47 (89%)

Query:    47 LTTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAE 93
             L    +Y RTPKCARCRNHGVVSALKGHKRYCRW+DC+CAKCTLIAE
Sbjct:    57 LRAAEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAE 103

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007548 "sex differentiation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0035914 "skeletal muscle cell differentiation" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=IEA

MGI|MGI:2653629 Dmrta2 "doublesex and mab-3 related transcription factor like family A2" [Mus musculus (taxid:10090)]

 Score = 233 (87.1 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
 Identities = 39/47 (82%), Positives = 42/47 (89%)

Query:    47 LTTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAE 93
             L    +Y RTPKCARCRNHGVVSALKGHKRYCRW+DC+CAKCTLIAE
Sbjct:    57 LRAAEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAE 103

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007548 "sex differentiation" evidence=IEA

GO:0035914 "skeletal muscle cell differentiation" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1309796 Dmrta1 "DMRT-like family A1" [Rattus norvegicus (taxid:10116)]

 Score = 226 (84.6 bits), Expect = 5.0e-27, Sum P(3) = 5.0e-27
 Identities = 38/41 (92%), Positives = 39/41 (95%)

Query:    53 YQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAE 93
             Y RTPKCARCRNHGVVSALKGHKR+CRWRDC CAKCTLIAE
Sbjct:    78 YPRTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAE 118

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007548 "sex differentiation" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|Q5VZB9 DMRTA1 "Doublesex- and mab-3-related transcription factor A1" [Homo sapiens (taxid:9606)]

 Score = 226 (84.6 bits), Expect = 9.7e-27, Sum P(2) = 9.7e-27
 Identities = 38/41 (92%), Positives = 39/41 (95%)

Query:    53 YQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAE 93
             Y RTPKCARCRNHGVVSALKGHKR+CRWRDC CAKCTLIAE
Sbjct:    91 YPRTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAE 131

GO:0007548 "sex differentiation" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1P9K2 DMRTA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 226 (84.6 bits), Expect = 5.0e-26, Sum P(2) = 5.0e-26
 Identities = 38/41 (92%), Positives = 39/41 (95%)

Query:    53 YQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAE 93
             Y RTPKCARCRNHGVVSALKGHKR+CRWRDC CAKCTLIAE
Sbjct:    90 YPRTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAE 130

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0007548 "sex differentiation" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SNK8 DMRTA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 226 (84.6 bits), Expect = 6.2e-26, Sum P(2) = 6.2e-26
 Identities = 38/41 (92%), Positives = 39/41 (95%)

Query:    53 YQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAE 93
             Y RTPKCARCRNHGVVSALKGHKR+CRWRDC CAKCTLIAE
Sbjct:    85 YPRTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAE 125

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0007548 "sex differentiation" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5UU75	DMTA2_DANRE	No assigned EC number	0.3625	0.6966	0.6522	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	412
pfam00751	46	pfam00751, DM, DM DNA binding domain	1e-27
smart00301	54	smart00301, DM, Doublesex DNA-binding motif	3e-25
pfam03474	39	pfam03474, DMA, DMRTA motif	3e-12

>gnl|CDD|144376 pfam00751, DM, DM DNA binding domain

 Score =  103 bits (258), Expect = 1e-27
 Identities = 36/46 (78%), Positives = 41/46 (89%)

Query: 56  TPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQ 101
           +PKCARCRNHGV+S LKGHKRYC +RDC C KC L+AERQR+MAAQ
Sbjct: 1   SPKCARCRNHGVLSPLKGHKRYCPYRDCTCEKCALVAERQRLMAAQ 46

The DM domain is named after dsx and mab-3. dsx contains a single amino-terminal DM domain, whereas mab-3 contains two amino-terminal domains. The DM domain has a pattern of conserved zinc chelating residues C2H2C4. The dsx DM domain has been shown to dimerise and bind palindromic DNA. Length = 46

>gnl|CDD|214606 smart00301, DM, Doublesex DNA-binding motif

 Score = 96.7 bits (241), Expect = 3e-25
 Identities = 29/54 (53%), Positives = 38/54 (70%)

Query: 55  RTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQ 108
           R P C +C NHGV   LKGHK  C +RDC C KCTL+ +R+ +MA Q+ L+R+Q
Sbjct: 1   RIPYCQKCENHGVKVPLKGHKPECPFRDCECEKCTLVEKRRALMALQIKLKREQ 54

Length = 54

>gnl|CDD|112299 pfam03474, DMA, DMRTA motif

 Score = 60.1 bits (146), Expect = 3e-12
 Identities = 25/37 (67%), Positives = 32/37 (86%)

Query: 293 RSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMM 329
           RSP+DVL ++FPNR+R  +E VL+RCKGDVLQAIE+ 
Sbjct: 2   RSPIDVLMKIFPNRKRSVLELVLKRCKGDVLQAIELA 38

This region is found to the C-terminus of the pfam00751. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown. Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	412
smart00301	54	DM Doublesex DNA-binding motif.	99.93
KOG3815|consensus	322		99.92
PF00751	47	DM: DM DNA binding domain; InterPro: IPR001275 Thi	99.87
PF03474	39	DMA: DMRTA motif; InterPro: IPR005173 This region	99.83
PF02845	42	CUE: CUE domain; InterPro: IPR003892 This domain m	97.14
smart00546	43	CUE Domain that may be involved in binding ubiquit	96.69
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	80.53

>smart00301 DM Doublesex DNA-binding motif

Probab=99.93  E-value=3.7e-27  Score=180.38  Aligned_cols=54  Identities=54%  Similarity=1.089  Sum_probs=52.8

Q ss_pred             CCCCCccccCCCCccccCCCCccCCCCCCCCCCchhHHHHHHhHHHHHHHhHhh
Q psy17102         55 RTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQ  108 (412)
Q Consensus        55 R~P~CaRCRNHGv~s~lKGHKr~Cpfr~C~C~kC~Li~ERqRVmAaQvALRRqQ  108 (412)
                      |.|+|+||+|||++++|||||++|+|++|.|++|.||+|||+|||+||||||+|
T Consensus         1 r~p~C~rCrnHg~~~~lKGHKr~C~~r~C~C~kC~Li~~Rq~vma~qvalrR~q   54 (54)
T smart00301        1 RIPYCQKCENHGVKVPLKGHKPECPFRDCECEKCTLVEKRRALMALQIKLKREQ   54 (54)
T ss_pred             CCCcChhHhcCCCeeccCCcCCCCCCCCCcCCCCcChHHHHHHHHHHHHHHhcC
Confidence            679999999999999999999999999999999999999999999999999987

>KOG3815|consensus

Probab=99.92  E-value=5.4e-26  Score=220.97  Aligned_cols=73  Identities=62%  Similarity=0.997  Sum_probs=67.9

Q ss_pred             hhhcCCCCCCCccccCCCCccccCCCCccCCCCCCCCCCchhHHHHHHhHHHHHHHhHhhHHHHHHHHHhccc
Q psy17102         49 TVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEENEARELGLI  121 (412)
Q Consensus        49 a~~~~~R~P~CaRCRNHGv~s~lKGHKr~Cpfr~C~C~kC~Li~ERqRVmAaQvALRRqQaqEe~e~relgl~  121 (412)
                      +.++..|.|+|+||||||++++|||||++|+|++|.|+||.||+||||||++||+|||+|++|+.+++++.+.
T Consensus        29 ~~~~~~r~p~CaRCrnHG~~~~LKGHk~~C~~~~C~C~kC~li~eRqrvmaaqvaLrRqqa~ee~~a~~~~~~  101 (322)
T KOG3815|consen   29 PPAPSARGPKCARCENHGVLSRLKGHKRSCPYRDCPCEKCGLVEERRRVMAAQVALRRQQDGEEAGAKERPPM  101 (322)
T ss_pred             ccccccccchhhhhhccCcceeccCCCCCCCCCCCCchHhcchHHHHHHHHHHHHHHHhhhhhhhhhcccCCC
Confidence            4678899999999999999999999999999999999999999999999999999999999999888744444

>PF00751 DM: DM DNA binding domain; InterPro: IPR001275 This domain was first discovered in the doublesex proteins of Drosophila melanogaster and is also seen in proteins from Caenorhabditis elegans []

Probab=99.87  E-value=7.5e-24  Score=158.08  Aligned_cols=47  Identities=79%  Similarity=1.471  Sum_probs=31.9

Q ss_pred             CCCCCccccCCCCccccCCCCccCCCCCCCCCCchhHHHHHHhHHHH
Q psy17102         55 RTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQ  101 (412)
Q Consensus        55 R~P~CaRCRNHGv~s~lKGHKr~Cpfr~C~C~kC~Li~ERqRVmAaQ  101 (412)
                      |.|+|+||+|||+++++||||++|+|++|.|++|.||+|||+|||+|
T Consensus         1 R~p~C~RCrnHG~~~~lKgHk~~C~~~~C~C~kC~li~eRq~vma~q   47 (47)
T PF00751_consen    1 RSPTCARCRNHGVIVPLKGHKRYCPFRDCQCDKCALIAERQRVMAAQ   47 (47)
T ss_dssp             --SS-HHHHTTT---TTTT-GGG-TTTT--SHHHHHHHHHH--S---
T ss_pred             CCCcCcchhcCCcccchhhhccccCcCCCcCCCCcCcHHHHHHHhcC
Confidence            67999999999999999999999999999999999999999999997

In D. melanogaster the doublesex gene controls somatic sexual differentiation by producing alternatively spliced mRNAs encoding related sex-specific polypeptides []. These proteins are believed to function as transcription factors on downstream sex-determination genes, especially on neuroblast differentiation and yolk protein genes transcription [, ]. The DM domain binds DNA as a dimer, allowing the recognition of pseudopalindromic sequences [, , ]. The NMR analysis of the DSX DM domain [] revealed a novel zinc module containing 'intertwined' CCHC and HCCC zinc-binding sites. The recognition of the DNA requires the carboxy-terminal basic tail which contacts the minor groove of the target sequence.; GO: 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0007548 sex differentiation, 0005634 nucleus; PDB: 1LPV_A.

>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []

Probab=99.83  E-value=3.9e-21  Score=139.04  Aligned_cols=39  Identities=56%  Similarity=1.042  Sum_probs=37.9

Q ss_pred             CCChhhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHH
Q psy17102        292 GRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMV  330 (412)
Q Consensus       292 ~Rsp~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L  330 (412)
                      +|+|+|||+||||++||++||+|||+|+||||||||++|
T Consensus         1 ~r~pidiL~rvFP~~kr~~Le~iL~~C~GDvv~AIE~~l   39 (39)
T PF03474_consen    1 QRSPIDILTRVFPHQKRSVLELILQRCNGDVVQAIEQFL   39 (39)
T ss_pred             CCCHHHHHHHHCCCCChHHHHHHHHHcCCcHHHHHHHhC
Confidence            589999999999999999999999999999999999986

DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=97.14  E-value=0.00065  Score=48.69  Aligned_cols=38  Identities=37%  Similarity=0.532  Sum_probs=34.5

Q ss_pred             hhhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHHhc
Q psy17102        295 PVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYS  332 (412)
Q Consensus       295 p~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L~s  332 (412)
                      -++.|.-+||+-.+.+|+.+|+.++|||-.||+.+|.+
T Consensus         4 ~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~   41 (42)
T PF02845_consen    4 MVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM   41 (42)
T ss_dssp             HHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            46889999999999999999999999999999999964

CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=96.69  E-value=0.0029  Score=45.35  Aligned_cols=38  Identities=24%  Similarity=0.426  Sum_probs=35.7

Q ss_pred             hhhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHHhc
Q psy17102        295 PVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYS  332 (412)
Q Consensus       295 p~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L~s  332 (412)
                      -++.|.-+||+-.+..++.+|+.|+|||-.||+.+|.+
T Consensus         5 ~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~   42 (43)
T smart00546        5 ALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG   42 (43)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            57889999999999999999999999999999999964

CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)

>cd00194 UBA Ubiquitin Associated domain

Probab=80.53  E-value=2.1  Score=29.41  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=21.0

Q ss_pred             hhHHHHHHHhhCchHHHHHHHHH
Q psy17102        308 RGEVETVLQRCKGDVLQAIEMMV  330 (412)
Q Consensus       308 Rs~LE~iLq~C~GDVVqAIE~~L  330 (412)
                      +......|+.|+|||-+||+.++
T Consensus        15 ~~~~~~AL~~~~~d~~~A~~~L~   37 (38)
T cd00194          15 REEARKALRATNNNVERAVEWLL   37 (38)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHh
Confidence            77888899999999999999886

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	412
1lpv_A	52	Drosophila Melanogaster Doublesex (dsx), Nmr, 18 St		2e-08

>pdb|1LPV|A Chain A, Drosophila Melanogaster Doublesex (dsx), Nmr, 18 Structures Length = 52

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 28/37 (75%)
Query: 57 PKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAE 93
          P CARCRNHG+   LKGHKRYC++R C C KC L A+
Sbjct: 8  PNCARCRNHGLKITLKGHKRYCKFRYCTCEKCRLTAD 44

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	412
1lpv_A	52	Doublesex protein; transcription, drosophila melan	1e-30

>1lpv_A Doublesex protein; transcription, drosophila melanogaster, DNA binding, gene regulation,; NMR {Synthetic} SCOP: g.62.1.1 Length = 52

 Score =  111 bits (278), Expect = 1e-30
 Identities = 31/48 (64%), Positives = 36/48 (75%)

Query: 54  QRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQ 101
           +  P CARCRNHG+   LKGHKRYC++R C C KC L A+RQRVMA Q
Sbjct: 5   RTPPNCARCRNHGLKITLKGHKRYCKFRYCTCEKCRLTADRQRVMALQ 52

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	412
1lpv_A	52	Doublesex protein; transcription, drosophila melan	99.89
2dhy_A	67	CUE domain-containing protein 1; structural genomi	97.07
1wgl_A	59	TOLL-interacting protein; CUE domain, structural g	96.78
1otr_A	49	Protein CUE2; protein-protein complex, cell cycle;	96.66
1p3q_Q	54	VPS9P, vacuolar protein sorting-associated protein	90.45
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	82.18
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	81.24
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	81.21

>1lpv_A Doublesex protein; transcription, drosophila melanogaster, DNA binding, gene regulation,; NMR {Synthetic} SCOP: g.62.1.1

Probab=99.89  E-value=6.9e-25  Score=165.81  Aligned_cols=47  Identities=66%  Similarity=1.298  Sum_probs=45.4

Q ss_pred             CCCCCccccCCCCccccCCCCccCCCCCCCCCCchhHHHHHHhHHHH
Q psy17102         55 RTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQ  101 (412)
Q Consensus        55 R~P~CaRCRNHGv~s~lKGHKr~Cpfr~C~C~kC~Li~ERqRVmAaQ  101 (412)
                      +.|+|+||+|||++++|||||++|+|++|.|+||.||+|||+|||||
T Consensus         6 ~~p~CaRCrNHG~~~~lKGHKr~C~~r~C~C~kC~li~eRqrvmaaQ   52 (52)
T 1lpv_A            6 TPPNCARCRNHGLKITLKGHKRYCKFRYCTCEKCRLTADRQRVMALQ   52 (52)
T ss_dssp             CCSSCHHHHTTTCCCTTTTCGGGCTTTTCCSHHHHHHHHHHCCSCCC
T ss_pred             CCCCCcccccCCCccccCCccCccCCCCCcCCCCcCcHHHhHHhccC
Confidence            45999999999999999999999999999999999999999999986

>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.07  E-value=0.00047  Score=54.18  Aligned_cols=42  Identities=24%  Similarity=0.351  Sum_probs=38.7

Q ss_pred             CCCChhhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHHhc
Q psy17102        291 NGRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYS  332 (412)
Q Consensus       291 ~~Rsp~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L~s  332 (412)
                      ....-++.|...||+-.+.+|+.+|+.|+|||-.||+.+|+-
T Consensus        17 ~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~m   58 (67)
T 2dhy_A           17 EFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQM   58 (67)
T ss_dssp             CSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            556678999999999999999999999999999999999973

>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=96.78  E-value=0.0011  Score=50.71  Aligned_cols=44  Identities=18%  Similarity=0.355  Sum_probs=39.4

Q ss_pred             CCCChhhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHHhcCC
Q psy17102        291 NGRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQ  334 (412)
Q Consensus       291 ~~Rsp~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L~s~e  334 (412)
                      -...-++.|.-.||+-.+.+|+.||+.|+|||=.||+.+|+-..
T Consensus         8 ~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~   51 (59)
T 1wgl_A            8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGE   51 (59)
T ss_dssp             SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSC
T ss_pred             CCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcC
Confidence            34467889999999999999999999999999999999997544

>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4

Probab=96.66  E-value=0.0016  Score=48.54  Aligned_cols=41  Identities=15%  Similarity=0.295  Sum_probs=37.3

Q ss_pred             hhhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHHhcCCC
Q psy17102        295 PVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQL  335 (412)
Q Consensus       295 p~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L~s~e~  335 (412)
                      =+..|.-.||+-...++..+|.-|+||+=.||..+|+..+.
T Consensus         7 ~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~~   47 (49)
T 1otr_A            7 KLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKENDD   47 (49)
T ss_dssp             HHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcccc
Confidence            36789999999999999999999999999999999986543

>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A

Probab=90.45  E-value=0.075  Score=40.48  Aligned_cols=40  Identities=13%  Similarity=0.321  Sum_probs=31.4

Q ss_pred             CCChhhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHHh
Q psy17102        292 GRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVY  331 (412)
Q Consensus       292 ~Rsp~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L~  331 (412)
                      ++.-++-|.-.||+=.+.+++.||+.++|++-+||+.+|.
T Consensus        12 ~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq   51 (54)
T 1p3q_Q           12 RKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS   51 (54)
T ss_dssp             HHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred             HHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            4556788999999999999999999999999999999985

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=82.18  E-value=1.5  Score=37.28  Aligned_cols=38  Identities=26%  Similarity=0.487  Sum_probs=30.0

Q ss_pred             hhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHHhcCC
Q psy17102        296 VDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQ  334 (412)
Q Consensus       296 ~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L~s~e  334 (412)
                      |+.|+.+ -.-.+.....+|..|+|||-+||+.+|.+..
T Consensus        43 Vk~L~Em-tG~seeeAr~AL~~~ngDl~~AI~~Lleg~~   80 (104)
T 1wj7_A           43 VKQLIDI-TGKNQDECVIALHDCNGDVNRAINVLLEGNP   80 (104)
T ss_dssp             HHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHTCSS
T ss_pred             HHHHHHh-hCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            4455555 3556778888999999999999999997764

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=81.24  E-value=1.3  Score=32.53  Aligned_cols=26  Identities=31%  Similarity=0.277  Sum_probs=22.6

Q ss_pred             chhHHHHHHHhhCchHHHHHHHHHhc
Q psy17102        307 RRGEVETVLQRCKGDVLQAIEMMVYS  332 (412)
Q Consensus       307 kRs~LE~iLq~C~GDVVqAIE~~L~s  332 (412)
                      .|......|+.|+|||-+|||.++++
T Consensus        25 ~~~~~~~AL~~t~gnve~Ave~L~~~   50 (53)
T 2knz_A           25 NREANLQALIATGGDINAAIERLLGS   50 (53)
T ss_dssp             CHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence            45677788999999999999999975

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=81.21  E-value=1.2  Score=32.14  Aligned_cols=26  Identities=19%  Similarity=0.268  Sum_probs=21.7

Q ss_pred             chhHHHHHHHhhCchHHHHHHHHHhc
Q psy17102        307 RRGEVETVLQRCKGDVLQAIEMMVYS  332 (412)
Q Consensus       307 kRs~LE~iLq~C~GDVVqAIE~~L~s  332 (412)
                      .|......|+.++|||-+|||.++++
T Consensus        21 d~~~~~~AL~~~~gnv~~Ave~L~~~   46 (46)
T 2bwb_A           21 DFDRNVAALRRSGGSVQGALDSLLNG   46 (46)
T ss_dssp             CHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred             cHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence            35556678999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	412
d1lpva_	52	g.62.1.1 (A:) DM domain of Doublesex (dsx) {Fruit	4e-29

>d1lpva_ g.62.1.1 (A:) DM domain of Doublesex (dsx) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 52

class: Small proteins
fold: Cysteine-rich DNA binding domain, (DM domain)
superfamily: Cysteine-rich DNA binding domain, (DM domain)
family: Cysteine-rich DNA binding domain, (DM domain)
domain: DM domain of Doublesex (dsx)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  105 bits (264), Expect = 4e-29
 Identities = 31/48 (64%), Positives = 36/48 (75%)

Query: 54  QRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQ 101
           +  P CARCRNHG+   LKGHKRYC++R C C KC L A+RQRVMA Q
Sbjct: 5   RTPPNCARCRNHGLKITLKGHKRYCKFRYCTCEKCRLTADRQRVMALQ 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	412
d1lpva_	52	DM domain of Doublesex (dsx) {Fruit fly (Drosophil	99.89
d1wgla_	59	Toll-interacting protein {Human (Homo sapiens) [Ta	96.3
d1mn3a_	54	Vacuolar protein sorting-associated protein vps9 {	94.88
d2bwba1	44	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	88.61
d2dnaa1	50	Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus	85.46
d2daha1	41	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	84.62

>d1lpva_ g.62.1.1 (A:) DM domain of Doublesex (dsx) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: Cysteine-rich DNA binding domain, (DM domain)
superfamily: Cysteine-rich DNA binding domain, (DM domain)
family: Cysteine-rich DNA binding domain, (DM domain)
domain: DM domain of Doublesex (dsx)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=2.1e-25  Score=166.81  Aligned_cols=48  Identities=69%  Similarity=1.320  Sum_probs=45.9

Q ss_pred             CCC-CCCccccCCCCccccCCCCccCCCCCCCCCCchhHHHHHHhHHHH
Q psy17102         54 QRT-PKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQ  101 (412)
Q Consensus        54 ~R~-P~CaRCRNHGv~s~lKGHKr~Cpfr~C~C~kC~Li~ERqRVmAaQ  101 (412)
                      +|. |+|+||||||++++|||||++|+|++|.|+||.||+|||+|||||
T Consensus         4 p~~~p~CaRCrNHG~~~~lKgHKr~C~~~~C~C~kC~Li~eRqrvmaaQ   52 (52)
T d1lpva_           4 PRTPPNCARCRNHGLKITLKGHKRYCKFRYCTCEKCRLTADRQRVMALQ   52 (52)
T ss_dssp             CCCCSSCHHHHTTTCCCTTTTCGGGCTTTTCCSHHHHHHHHHHCCSCCC
T ss_pred             CCCCCCCcccccCCceeecCCcccccCCCCCcCCCCceEhHHhhhccCC
Confidence            455 999999999999999999999999999999999999999999987

>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Toll-interacting protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0018  Score=48.24  Aligned_cols=42  Identities=19%  Similarity=0.358  Sum_probs=38.3

Q ss_pred             ChhhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHHhcCCC
Q psy17102        294 SPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQL  335 (412)
Q Consensus       294 sp~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L~s~e~  335 (412)
                      .-+..|.-.||+--+.+|+.||+.|+|+|-.||+.+|.-.+.
T Consensus        11 e~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL~Msd~   52 (59)
T d1wgla_          11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE   52 (59)
T ss_dssp             HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Confidence            458899999999999999999999999999999999985543

>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Vacuolar protein sorting-associated protein vps9
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.88  E-value=0.01  Score=43.39  Aligned_cols=39  Identities=15%  Similarity=0.353  Sum_probs=36.1

Q ss_pred             CChhhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHHh
Q psy17102        293 RSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVY  331 (412)
Q Consensus       293 Rsp~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L~  331 (412)
                      ...++.|.-.||+=-+.+|+.||..|+|+|=.||+.+|.
T Consensus        13 ~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~aidaLL~   51 (54)
T d1mn3a_          13 KDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCVDALLS   51 (54)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            345788999999999999999999999999999999995

>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.61  E-value=0.12  Score=36.25  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=19.0

Q ss_pred             HHHHHHhhCchHHHHHHHHHhc
Q psy17102        311 VETVLQRCKGDVLQAIEMMVYS  332 (412)
Q Consensus       311 LE~iLq~C~GDVVqAIE~~L~s  332 (412)
                      --..|+.|+|||-.|||.+|+|
T Consensus        23 Ni~AL~~t~GdV~~Aie~Ll~g   44 (44)
T d2bwba1          23 NVAALRRSGGSVQGALDSLLNG   44 (44)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHCC
T ss_pred             HHHHHHHcCCCHHHHHHHHhCc
Confidence            3457899999999999999975

>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-like protein Ubqlnl
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.46  E-value=0.26  Score=35.32  Aligned_cols=22  Identities=27%  Similarity=0.188  Sum_probs=19.3

Q ss_pred             HHHHHhhCchHHHHHHHHHhcC
Q psy17102        312 ETVLQRCKGDVLQAIEMMVYSE  333 (412)
Q Consensus       312 E~iLq~C~GDVVqAIE~~L~s~  333 (412)
                      -..|+.|+|||-.|||.+|++.
T Consensus        27 i~AL~~t~GdV~~Aie~Ll~~~   48 (50)
T d2dnaa1          27 LQALIATDGDTNAAIYKLKSSQ   48 (50)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHCC
T ss_pred             HHHHHHcCCCHHHHHHHHHhcC
Confidence            3578999999999999999864

>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.62  E-value=0.23  Score=34.09  Aligned_cols=28  Identities=36%  Similarity=0.360  Sum_probs=21.3

Q ss_pred             cCCCchhHHHHHHHhhCchHHHHHHHHHhc
Q psy17102        303 FPNRRRGEVETVLQRCKGDVLQAIEMMVYS  332 (412)
Q Consensus       303 FP~~kRs~LE~iLq~C~GDVVqAIE~~L~s  332 (412)
                      |.++.++  -.+|+.++|||-.|||.+|.+
T Consensus        14 F~d~~~N--i~AL~~t~Gdv~~Aie~Ll~~   41 (41)
T d2daha1          14 FLNREAN--LQALIATGGDVDAAVEKLRQS   41 (41)
T ss_dssp             CCCHHHH--HHHHHHHTSCHHHHHHHHHHH
T ss_pred             CCCHHHH--HHHHHHcCCCHHHHHHHHHhC
Confidence            4444443  467899999999999999863