Psyllid ID: psy17141

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MNITMVLYYATGFSTAKVRFPNYRKNCTRISLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETNVLEVQIRLYFA
Secondary Structure (PSIPRED)
cEEEEEcccccccHHHHHHccccccHHHHHHHHHcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccHHHHHEHHHHHHHHccHHHHHHcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccEHEEEEEcc
Coil and Loop (DISEMBL)
MNITMVLYYATgfstakvrfpnyrknctrislyeydkdhipeKILKKITnyvnlpdfdpeeiGMVSVAAKSLSKWVMAIEKYAQLFKDIQrqypsiidcttidwildcpeqSLMEVAERFLETVDILETNVLEVQIRLYFA
Flexible Loop (DISEMBL)
MNITMVLYYatgfstakvrfpnyrKNCTRISlyeydkdhipeKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVdiletnvlevqirlyfa
Low Complexity Region (SEG)
MNITMVLYYATGFSTAKVRFPNYRKNCTRISLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETNVLEVQIRLYFA
Disordered region (IsUnstruct)
**ITMVLYYATGFSTAKVRFPNYRKNCTRISLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETNVLEVQIRLYF*
Disordered Region (DISOPRED)
MNITMVLYYATGFSTAKVRFPNYRKNCTRISLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETNVLEVQIRLYFA
Disordered Region (DISEMBL)
MNITMVLYYATGFSTAKVRFPNYRKNCTRISLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETNVLEVQIRLYFA
Disordered Region (DISPRO)
*NITMVLYYATGFSTAKVRFPNYRKNCTRISLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETNVLEVQIRLYFA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNITMVLYYATGFSTAKVRFPNYRKNCTRISLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETNVLEVQIRLYFA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
P0C6F1	4456	Dynein heavy chain 2, axo	yes	N/A	0.673	0.021	0.408	6e-12
Q9P225	4427	Dynein heavy chain 2, axo	yes	N/A	0.673	0.021	0.408	1e-11
Q9MBF8	4513	Dynein-1-beta heavy chain	N/A	N/A	0.503	0.015	0.397	1e-08
Q0VDD8	3507	Dynein heavy chain 14, ax	no	N/A	0.631	0.025	0.365	3e-08
Q9C0G6	4158	Dynein heavy chain 6, axo	no	N/A	0.418	0.014	0.440	9e-08
Q8WXX0	4024	Dynein heavy chain 7, axo	no	N/A	0.687	0.024	0.351	2e-07
Q63170	4057	Dynein heavy chain 7, axo	no	N/A	0.687	0.023	0.342	7e-07
P23098	4466	Dynein beta chain, ciliar	N/A	N/A	0.425	0.013	0.433	8e-07
Q9P2D7	4330	Dynein heavy chain 1, axo	no	N/A	0.624	0.020	0.326	1e-06
Q63164	4516	Dynein heavy chain 1, axo	no	N/A	0.574	0.017	0.315	3e-06

>sp|P0C6F1|DYH2_MOUSE Dynein heavy chain 2, axonemal OS=Mus musculus GN=Dnah2 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 3/98 (3%)

Query: 31   SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
            SL  +DKD+I +K+LKKI  Y   PDF P+ IG VS+AAKSL  WV A+E Y +L++ ++
Sbjct: 3184 SLINFDKDNISDKVLKKIGAYCAQPDFQPDIIGRVSLAAKSLCMWVRAMELYGRLYRVVE 3243

Query: 91   RQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILE 128
               P  I        L   + +L E  E+  E  + LE
Sbjct: 3244 ---PKRIRMNAAMAQLQEKQAALAEAQEKLREVAEKLE 3278

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.
Mus musculus (taxid: 10090)

>sp|Q9P225|DYH2_HUMAN Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=2 SV=3

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 3/98 (3%)

Query: 31   SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
            SL  +DKD+I +K+LKKI  Y   PDF P+ IG VS+AAKSL  WV A+E Y +L++ ++
Sbjct: 3155 SLINFDKDNISDKVLKKIGAYCAQPDFQPDIIGRVSLAAKSLCMWVRAMELYGRLYRVVE 3214

Query: 91   RQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILE 128
               P  I        L   + +L E  E+  E  + LE
Sbjct: 3215 ---PKRIRMNAALAQLREKQAALAEAQEKLREVAEKLE 3249

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Homo sapiens (taxid: 9606)

>sp|Q9MBF8|DYH1B_CHLRE Dynein-1-beta heavy chain, flagellar inner arm I1 complex OS=Chlamydomonas reinhardtii GN=DHC10 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 7/78 (8%)

Query: 19   RFPNYRKNCTRIS-------LYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKS 71
            R PN+ +   R+S       L E+DKD + + +LKKI  +   PDF  E+I  VS AA  
Sbjct: 3221 RPPNWDEAKKRLSDANFMQSLKEFDKDKLDDSLLKKIGKFTANPDFTYEKINTVSAAASG 3280

Query: 72   LSKWVMAIEKYAQLFKDI 89
            + KWV A+E Y  + KD+
Sbjct: 3281 MCKWVHAMETYGYVAKDV 3298

Force generating protein of eukaryotic cilia and flagella. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Required for assembly of the I1 inner arm complex and its targeting to the appropriate axoneme location. Also required for phototaxis.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q0VDD8|DYH14_HUMAN Dynein heavy chain 14, axonemal OS=Homo sapiens GN=DNAH14 PE=2 SV=3

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 32   LYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQR 91
            L   DKD IP+K+  K+   V LPDF+P +I +VSVA  SL +WV+A+  Y ++ K +  
Sbjct: 2408 LINLDKDSIPDKVFVKLKKIVTLPDFNPHKISLVSVACCSLCQWVIALNNYHEVQKVVG- 2466

Query: 92   QYPSIIDCTTIDWILDCPEQSLMEVAERFLETV 124
              P  I       +L    Q L E  +R L+ +
Sbjct: 2467 --PKQIQVAEAQNVLKIARQRLAE-KQRGLQLI 2496

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Homo sapiens (taxid: 9606)

>sp|Q9C0G6|DYH6_HUMAN Dynein heavy chain 6, axonemal OS=Homo sapiens GN=DNAH6 PE=1 SV=3

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 41/59 (69%)

Query: 32   LYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
            L EYDK++I  +IL K+  Y+N PDF PE++  VS A KS+  WV A++ Y+++ K ++
Sbjct: 2841 LLEYDKENIKPQILAKLQKYINNPDFVPEKVEKVSKACKSMCMWVRAMDLYSRVVKVVE 2899

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Homo sapiens (taxid: 9606)

>sp|Q8WXX0|DYH7_HUMAN Dynein heavy chain 7, axonemal OS=Homo sapiens GN=DNAH7 PE=1 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 11/108 (10%)

Query: 31   SLYEYDKDHIPEKILKKI-TNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDI 89
            SL+EYDKD+IP   +  I  NY+  PDF PE+I   S AA+ L KWV+A++ Y ++ K +
Sbjct: 2751 SLHEYDKDNIPPAYMNIIRKNYIPNPDFVPEKIRNASTAAEGLCKWVIAMDSYDKVAKIV 2810

Query: 90   QRQYPSIIDCTTIDWILDCP-------EQSLMEVAERFLETVDILETN 130
                P  I     +  L          + +L EV ++     D LE N
Sbjct: 2811 A---PKKIKLAAAEGELKIAMDGLRKKQAALKEVQDKLARLQDTLELN 2855

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Homo sapiens (taxid: 9606)

>sp|Q63170|DYH7_RAT Dynein heavy chain 7, axonemal OS=Rattus norvegicus GN=Dnah7 PE=2 SV=2

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 11/108 (10%)

Query: 31   SLYEYDKDHIPEKILKKI-TNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDI 89
            SL+EYDKD+IP   +  I  +Y+  PDF PE+I   S AA+ L KWV+A++ Y ++ K +
Sbjct: 2784 SLHEYDKDNIPPAYMNIIRKSYIPNPDFVPEKIRNASTAAEGLCKWVIAMDSYDKVAKIV 2843

Query: 90   QRQYPSIIDCTTIDWILDCP-------EQSLMEVAERFLETVDILETN 130
                P  I     +  L          + +L EV ++  +  D LE N
Sbjct: 2844 A---PKKIKLAAAEGELRIAMEGLRKKQAALREVQDKLAKLQDTLELN 2888

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Rattus norvegicus (taxid: 10116)

>sp|P23098|DYHC_TRIGR Dynein beta chain, ciliary OS=Tripneustes gratilla PE=1 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query: 31   SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
            SL  YDK++I E  LK I  Y+N P+F+PE I   S+AA  L  WV+ I K+  ++ D++
Sbjct: 3204 SLINYDKENIHENCLKSIKEYLNDPEFEPEYIKGKSLAAGGLCSWVVNIVKFYNVYCDVE 3263

Force generating protein of eukaryotic cilia and flagella. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Tripneustes gratilla (taxid: 7673)

>sp|Q9P2D7|DYH1_HUMAN Dynein heavy chain 1, axonemal OS=Homo sapiens GN=DNAH1 PE=2 SV=4

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 4/92 (4%)

Query: 31   SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
            SL+++DKD+I + ++K I  Y++  +F P  I  VS A  S+ +WV A+ KY  + K ++
Sbjct: 2995 SLFKFDKDNIGDVVIKAIQPYIDNEEFQPATIAKVSKACTSICQWVRAMHKYHFVAKAVE 3054

Query: 91   RQYPSII----DCTTIDWILDCPEQSLMEVAE 118
             +  +++    D      ILD  +Q L EV +
Sbjct: 3055 PKRQALLEAQDDLGVTQRILDEAKQRLREVED 3086

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Homo sapiens (taxid: 9606)

>sp|Q63164|DYH1_RAT Dynein heavy chain 1, axonemal OS=Rattus norvegicus GN=Dnah1 PE=2 SV=2

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 11/92 (11%)

Query: 31   SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
            SL+++DKD+I E ++K I  Y++  +F P  I  VS A  S+ +WV A+ KY  + K ++
Sbjct: 3228 SLFKFDKDNIGEAVIKAIQPYIDNEEFQPAAIAKVSKACTSICQWVRAMHKYHFVAKAVE 3287

Query: 91   RQYPSIIDCTTIDWILDCPEQSLMEVAERFLE 122
             +  ++ +            Q  +EV +R LE
Sbjct: 3288 PKRQALREA-----------QDDLEVTQRILE 3308

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
242016412	4502	dynein heavy chain, cytosolic, putative	0.404	0.012	0.614	2e-12
307196243	4429	Dynein heavy chain 2, axonemal [Harpegna	0.390	0.012	0.508	4e-11
189240971	2145	PREDICTED: similar to dynein axonemal he	0.418	0.027	0.525	6e-11
270013417	2479	hypothetical protein TcasGA2_TC012013 [T	0.418	0.023	0.525	6e-11
189240969	4203	PREDICTED: similar to 1-beta dynein [Tri	0.418	0.014	0.525	8e-11
345494247	4464	PREDICTED: dynein heavy chain 2, axonema	0.404	0.012	0.508	1e-10
296476642	4424	TPA: dynein, axonemal, heavy chain 2 [Bo	0.673	0.021	0.418	1e-10
440906840	4472	Dynein heavy chain 2, axonemal, partial	0.673	0.021	0.418	1e-10
300795653	4424	dynein heavy chain 2, axonemal [Bos taur	0.673	0.021	0.418	1e-10
357613558	2006	putative dynein axonemal heavy chain-lik	0.418	0.029	0.559	1e-10

>gi|242016412|ref|XP_002428815.1| dynein heavy chain, cytosolic, putative [Pediculus humanus corporis] gi|212513512|gb|EEB16077.1| dynein heavy chain, cytosolic, putative [Pediculus humanus corporis]

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 46/57 (80%)

Query: 31   SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFK 87
            SL EYDK++I EKI+KKI  Y  L DFDPE++G VS+AAKSL  WV+AIEKY ++++
Sbjct: 3231 SLREYDKNNISEKIMKKIATYTELEDFDPEKVGQVSLAAKSLCMWVIAIEKYGKVWR 3287

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196243|gb|EFN77889.1| Dynein heavy chain 2, axonemal [Harpegnathos saltator]

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 46/57 (80%)

Query: 31   SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFK 87
            +L ++DKDHI +++L+ I  Y + P+FDP ++G+VSVAAKSL  WV+A+EKY +L++
Sbjct: 3125 TLRDFDKDHISDRVLRTIAKYTSDPEFDPAKVGLVSVAAKSLCMWVIAMEKYGKLYR 3181

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240971|ref|XP_967448.2| PREDICTED: similar to dynein axonemal heavy chain-like protein [Tribolium castaneum]

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 47/59 (79%)

Query: 32  LYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
           L ++DK+HI ++ LKK+ NY   P+F PE++G VS AAKSL +WV+AIEKYA+++K ++
Sbjct: 877 LKDFDKNHISDRTLKKVANYTQNPEFIPEKVGTVSFAAKSLCQWVIAIEKYARVWKIVE 935

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013417|gb|EFA09865.1| hypothetical protein TcasGA2_TC012013 [Tribolium castaneum]

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 47/59 (79%)

Query: 32   LYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
            L ++DK+HI ++ LKK+ NY   P+F PE++G VS AAKSL +WV+AIEKYA+++K ++
Sbjct: 1298 LKDFDKNHISDRTLKKVANYTQNPEFIPEKVGTVSFAAKSLCQWVIAIEKYARVWKIVE 1356

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240969|ref|XP_967358.2| PREDICTED: similar to 1-beta dynein [Tribolium castaneum]

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 47/59 (79%)

Query: 32   LYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
            L ++DK+HI ++ LKK+ NY   P+F PE++G VS AAKSL +WV+AIEKYA+++K ++
Sbjct: 2935 LKDFDKNHISDRTLKKVANYTQNPEFIPEKVGTVSFAAKSLCQWVIAIEKYARVWKIVE 2993

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345494247|ref|XP_001604907.2| PREDICTED: dynein heavy chain 2, axonemal-like [Nasonia vitripennis]

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 47/57 (82%)

Query: 31   SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFK 87
            +L ++DKDHI +K L+ I+ Y + P+F+PE++G+VS AAKSLS WV+A+E+Y +L++
Sbjct: 3178 TLRDFDKDHISDKTLRTISKYTSNPEFEPEKVGIVSNAAKSLSMWVIAMEQYGKLYR 3234

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|296476642|tpg|DAA18757.1| TPA: dynein, axonemal, heavy chain 2 [Bos taurus]

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 3/98 (3%)

Query: 31   SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
            SL  +DKD+I +K+LKKI  Y   PDF P+ IG VS+AAKSL  WV A+E Y +L++ ++
Sbjct: 3152 SLIHFDKDNISDKVLKKIGAYCAQPDFQPDIIGRVSLAAKSLCMWVRAMELYGRLYRVVE 3211

Query: 91   RQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILE 128
               P  I   T    L   + +L E  E+  E  + LE
Sbjct: 3212 ---PKRIRMNTALAQLQEKQAALAEAQEKLREVAEKLE 3246

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|440906840|gb|ELR57060.1| Dynein heavy chain 2, axonemal, partial [Bos grunniens mutus]

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 3/98 (3%)

Query: 31   SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
            SL  +DKD+I +K+LKKI  Y   PDF P+ IG VS+AAKSL  WV A+E Y +L++ ++
Sbjct: 3197 SLIHFDKDNISDKVLKKIGAYCAQPDFQPDIIGRVSLAAKSLCMWVRAMELYGRLYRVVE 3256

Query: 91   RQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILE 128
               P  I   T    L   + +L E  E+  E  + LE
Sbjct: 3257 ---PKRIRMNTALAQLQEKQAALAEAQEKLREVAEKLE 3291

Source: Bos grunniens mutus

Species: Bos grunniens

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|300795653|ref|NP_001178178.1| dynein heavy chain 2, axonemal [Bos taurus]

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 3/98 (3%)

Query: 31   SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
            SL  +DKD+I +K+LKKI  Y   PDF P+ IG VS+AAKSL  WV A+E Y +L++ ++
Sbjct: 3152 SLIHFDKDNISDKVLKKIGAYCAQPDFQPDIIGRVSLAAKSLCMWVRAMELYGRLYRVVE 3211

Query: 91   RQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILE 128
               P  I   T    L   + +L E  E+  E  + LE
Sbjct: 3212 ---PKRIRMNTALAQLQEKQAALAEAQEKLREVAEKLE 3246

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|357613558|gb|EHJ68584.1| putative dynein axonemal heavy chain-like protein [Danaus plexippus]

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 44/59 (74%)

Query: 32  LYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
           L ++DKD+I +K LKKI  Y   PDFDPE +G VS+AAKSL  WV AIEKY +++K ++
Sbjct: 576 LRDFDKDNISDKTLKKIGTYTAKPDFDPEIVGTVSLAAKSLCLWVRAIEKYGKVYKIVK 634

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
UNIPROTKB|F1MK55	4424	DNAH2 "Uncharacterized protein	0.673	0.021	0.418	5.5e-11
UNIPROTKB|I3L520	1159	DNAH2 "Dynein heavy chain 2, a	0.673	0.081	0.408	6.8e-11
MGI|MGI:107731	4456	Dnahc2 "dynein, axonemal, heav	0.673	0.021	0.408	1.5e-10
UNIPROTKB|E2QTI3	4468	DNAH2 "Uncharacterized protein	0.673	0.021	0.408	1.9e-10
UNIPROTKB|Q9P225	4427	DNAH2 "Dynein heavy chain 2, a	0.673	0.021	0.408	3e-10
UNIPROTKB|F1NQR9	3835	F1NQR9 "Uncharacterized protei	0.397	0.014	0.456	3.2e-09
UNIPROTKB|F1N5R7	4024	DNAH7 "Uncharacterized protein	0.404	0.014	0.482	4.2e-09
FB|FBgn0001313	4167	kl-2 "male fertility factor kl	0.397	0.013	0.428	6e-09
FB|FBgn0013809	4081	Dhc16F "Dynein heavy chain at	0.744	0.025	0.311	7.2e-09
UNIPROTKB|F1LXT8	1773	Dnahc6 "Protein Dnahc6" [Rattu	0.418	0.033	0.440	9.2e-09

UNIPROTKB|F1MK55 DNAH2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 172 (65.6 bits), Expect = 5.5e-11, P = 5.5e-11
 Identities = 41/98 (41%), Positives = 57/98 (58%)

Query:    31 SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
             SL  +DKD+I +K+LKKI  Y   PDF P+ IG VS+AAKSL  WV A+E Y +L++ ++
Sbjct:  3152 SLIHFDKDNISDKVLKKIGAYCAQPDFQPDIIGRVSLAAKSLCMWVRAMELYGRLYRVVE 3211

Query:    91 RQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILE 128
                P  I   T    L   + +L E  E+  E  + LE
Sbjct:  3212 ---PKRIRMNTALAQLQEKQAALAEAQEKLREVAEKLE 3246

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

UNIPROTKB|I3L520 DNAH2 "Dynein heavy chain 2, axonemal" [Homo sapiens (taxid:9606)]

 Score = 165 (63.1 bits), Expect = 6.8e-11, P = 6.8e-11
 Identities = 40/98 (40%), Positives = 56/98 (57%)

Query:    31 SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
             SL  +DKD+I +K+LKKI  Y   PDF P+ IG VS+AAKSL  WV A+E Y +L++ ++
Sbjct:   104 SLINFDKDNISDKVLKKIGAYCAQPDFQPDIIGRVSLAAKSLCMWVRAMELYGRLYRVVE 163

Query:    91 RQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILE 128
                P  I        L   + +L E  E+  E  + LE
Sbjct:   164 ---PKRIRMNAALAQLREKQAALAEAQEKLREVAEKLE 198

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

MGI|MGI:107731 Dnahc2 "dynein, axonemal, heavy chain 2" [Mus musculus (taxid:10090)]

 Score = 168 (64.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 40/98 (40%), Positives = 56/98 (57%)

Query:    31 SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
             SL  +DKD+I +K+LKKI  Y   PDF P+ IG VS+AAKSL  WV A+E Y +L++ ++
Sbjct:  3184 SLINFDKDNISDKVLKKIGAYCAQPDFQPDIIGRVSLAAKSLCMWVRAMELYGRLYRVVE 3243

Query:    91 RQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILE 128
                P  I        L   + +L E  E+  E  + LE
Sbjct:  3244 ---PKRIRMNAAMAQLQEKQAALAEAQEKLREVAEKLE 3278

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|E2QTI3 DNAH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 167 (63.8 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 40/98 (40%), Positives = 56/98 (57%)

Query:    31 SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
             SL  +DKD+I +K+LKKI  Y   PDF P+ IG VS+AAKSL  WV A+E Y +L++ ++
Sbjct:  3196 SLIHFDKDNISDKVLKKIGAYCAQPDFQPDIIGRVSLAAKSLCMWVRAMELYGRLYRVVE 3255

Query:    91 RQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILE 128
                P  I        L   + +L E  E+  E  + LE
Sbjct:  3256 ---PKRIRMNAALAQLQEKQAALAEAQEKLREVAEKLE 3290

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

UNIPROTKB|Q9P225 DNAH2 "Dynein heavy chain 2, axonemal" [Homo sapiens (taxid:9606)]

 Score = 165 (63.1 bits), Expect = 3.0e-10, P = 3.0e-10
 Identities = 40/98 (40%), Positives = 56/98 (57%)

Query:    31 SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
             SL  +DKD+I +K+LKKI  Y   PDF P+ IG VS+AAKSL  WV A+E Y +L++ ++
Sbjct:  3155 SLINFDKDNISDKVLKKIGAYCAQPDFQPDIIGRVSLAAKSLCMWVRAMELYGRLYRVVE 3214

Query:    91 RQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILE 128
                P  I        L   + +L E  E+  E  + LE
Sbjct:  3215 ---PKRIRMNAALAQLREKQAALAEAQEKLREVAEKLE 3249

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=NAS

GO:0005858 "axonemal dynein complex" evidence=NAS

GO:0003777 "microtubule motor activity" evidence=NAS

UNIPROTKB|F1NQR9 F1NQR9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 138 (53.6 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
 Identities = 26/57 (45%), Positives = 39/57 (68%)

Query:    32 LYEYDKDHIPEKILKKI-TNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFK 87
             L EYDKD+IP  +++KI   Y+  P+FDP ++   S AA+ L KW+MA+E Y ++ K
Sbjct:  2560 LKEYDKDNIPAAVMQKIRAEYLTNPEFDPPKVAKASSAAEGLCKWIMAMEVYDRVAK 2616

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1N5R7 DNAH7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 135 (52.6 bits), Expect = 4.2e-09, Sum P(3) = 4.2e-09
 Identities = 28/58 (48%), Positives = 39/58 (67%)

Query:    31 SLYEYDKDHIPEKILKKIT-NYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFK 87
             SL+EYDKD+IP   +  I  NY+  PDF PE+I   S AA+ L KWV+A++ Y ++ K
Sbjct:  2751 SLHEYDKDNIPPAYMNIIRKNYIPNPDFVPEKIRNASTAAEGLCKWVIAMDSYDKVAK 2808

GO:0005929 "cilium" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

FB|FBgn0001313 kl-2 "male fertility factor kl2" [Drosophila melanogaster (taxid:7227)]

 Score = 149 (57.5 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
 Identities = 24/56 (42%), Positives = 41/56 (73%)

Query:    32 LYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFK 87
             L  +D+DHI +K LK+I  Y   P+ +P+++ +VS+A KSL +W+MAIE Y ++++
Sbjct:  2901 LKNFDRDHISDKTLKRIAIYTKNPELEPDKVAVVSLACKSLMQWIMAIENYGKVYR 2956

GO:0003774 "motor activity" evidence=ISS

GO:0005858 "axonemal dynein complex" evidence=ISS

GO:0005875 "microtubule associated complex" evidence=ISS

GO:0030286 "dynein complex" evidence=TAS

GO:0042623 "ATPase activity, coupled" evidence=ISS;TAS

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

FB|FBgn0013809 Dhc16F "Dynein heavy chain at 16F" [Drosophila melanogaster (taxid:7227)]

 Score = 150 (57.9 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
 Identities = 34/109 (31%), Positives = 61/109 (55%)

Query:    32 LYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFK---- 87
             L+EYDK+H+ E  LKK+  Y++  DF P +   VS  AKS+S WV++++K+++++K    
Sbjct:  2776 LFEYDKEHMKEDTLKKVKKYIDHKDFVPAKFEKVSKVAKSMSMWVISMDKFSKVYKVVEP 2835

Query:    88 DIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETNVLEVQI 136
              I+R+  +  +   +  +L   ++ L  V  +     D LE    E Q+
Sbjct:  2836 KIKRKEAAEAELKEVMTVLRQKQKELAAVEAKIQGLRDSLEEKQREFQV 2884

GO:0005875 "microtubule associated complex" evidence=ISS

GO:0005858 "axonemal dynein complex" evidence=ISS

GO:0003774 "motor activity" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|F1LXT8 Dnahc6 "Protein Dnahc6" [Rattus norvegicus (taxid:10116)]

 Score = 147 (56.8 bits), Expect = 9.2e-09, P = 9.2e-09
 Identities = 26/59 (44%), Positives = 42/59 (71%)

Query:    32 LYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
             L EYDK++I  +IL K+  Y+N PDF PE++  VS A KS+  WV A++ Y+++ K+++
Sbjct:   464 LLEYDKENIKPQILSKLQRYINNPDFVPEKVEKVSKACKSMCMWVRAMDLYSRVVKEVE 522

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	141
pfam12777	344	pfam12777, MT, Microtubule-binding stalk of dynein	2e-10
pfam12780	268	pfam12780, AAA_8, P-loop containing dynein motor r	3e-07

>gnl|CDD|193253 pfam12777, MT, Microtubule-binding stalk of dynein motor

 Score = 57.0 bits (137), Expect = 2e-10
 Identities = 24/60 (40%), Positives = 37/60 (61%)

Query: 31  SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
           SL  +DK++I E  LK I  Y+  P+FDPE I   S AA  L  WV+ I ++ +++ D++
Sbjct: 158 SLINFDKENIHENCLKAIKPYLGDPEFDPEFIRSKSTAAAGLCSWVINIVRFYEVYCDVE 217

the 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This family is the region between D4 and D5 and is the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component. Length = 344

>gnl|CDD|193256 pfam12780, AAA_8, P-loop containing dynein motor region D4

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 15/41 (36%), Positives = 28/41 (68%)

Query: 91  RQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETNV 131
           R++P++++CT IDW  + P+ +L+ V+ RFLE  + +   V
Sbjct: 180 RKFPAVVNCTAIDWFHEWPQDALVSVSARFLEETEGIPWEV 220

The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This particular family is the D4 ATP-binding region of the motor. Length = 268

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	99.93
KOG3595|consensus	1395		99.46
PF12780	268	AAA_8: P-loop containing dynein motor region D4; I	98.49
COG5245	3164	DYN1 Dynein, heavy chain [Cytoskeleton]	98.47
KOG3595|consensus	1395		95.57

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=99.93  E-value=4e-27  Score=190.47  Aligned_cols=126  Identities=31%  Similarity=0.490  Sum_probs=107.8

Q ss_pred             cCChHHHHhcc---HhhhcccccccccccccCCCCHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHhhhhhhHHHH
Q psy17141         10 ATGFSTAKVRF---PNYRKNCTRISLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLF   86 (141)
Q Consensus        10 ~~~W~~ak~~l---~~f~~~~~~~~L~~fd~d~i~~~~l~~i~~~l~~p~F~~e~i~~~S~Aa~~l~~WV~a~~~y~~v~   86 (141)
                      +++|.+||++|   ++|++     +|.+||+|+|++.++.+|++|+.+|+|+|+.+.++|.||++||.||+||+.|++|+
T Consensus       139 ~~~W~~ak~~l~~~~~Fl~-----~L~~fd~~~i~~~~~~~l~~~~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v~  213 (344)
T PF12777_consen  139 DTSWESAKKLLSDSDNFLQ-----RLKNFDKDNIPEATIKKLKKYLKNPDFNPEKVRKASKAAGSLCKWVRAMVKYYEVN  213 (344)
T ss_dssp             --HHHHHHCHHCSSTTHHH-----HHHHS-GGG--HHHHHHHHCTTTSTTSSHHHHHHH-TTHHHHHHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHHHhHHHHHH-----HHHhhccccccHHHHHHHHHHhcCCCCCHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            57899999988   37999     99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcchhhHHHHH----HHhHHhhchHHHHHHHHHHHHHHhhh----------hHHHHHHHHHhhhc
Q psy17141         87 KDIQRQYPSIIDCT----TIDWILDCPEQSLMEVAERFLETVDI----------LETNVLEVQIRLYF  140 (141)
Q Consensus        87 ~~v~Pk~~~L~~~~----~~~~~l~~~~~~L~~V~~~l~~l~~~----------~~~~~~~~~~rl~~  140 (141)
                      +.|.|++.++.++.    .+...|...+..|.++.+++..++..          ++.++..|++||..
T Consensus       214 ~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r  281 (344)
T PF12777_consen  214 KEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER  281 (344)
T ss_dssp             CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            99999999999884    46677888888899998888888743          56667788888764

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>KOG3595|consensus

Probab=99.46  E-value=3.4e-13  Score=125.10  Aligned_cols=113  Identities=28%  Similarity=0.451  Sum_probs=98.9

Q ss_pred             ccCChHHHHhcc--H-hhhcccccccccccccCCCCHHHHHHHH-hhhCCCCCCHHHHHHHHHHHHhhchHHhhhhhhHH
Q psy17141          9 YATGFSTAKVRF--P-NYRKNCTRISLYEYDKDHIPEKILKKIT-NYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQ   84 (141)
Q Consensus         9 ~~~~W~~ak~~l--~-~f~~~~~~~~L~~fd~d~i~~~~l~~i~-~~l~~p~F~~e~i~~~S~Aa~~l~~WV~a~~~y~~   84 (141)
                      ..++|..+.++|  . .|+.     .+.+|+++++++.+.+.+. .|+.+|+|.|+.+.++|.||+++|.||.|+.+|+.
T Consensus       850 ~~~~w~~~~~~~~~~~~fl~-----~l~~~~~~~i~~~~~k~i~~~~~~~p~f~~~~v~~~s~a~~~l~~wv~a~~~~~k  924 (1395)
T KOG3595|consen  850 SSTDWKNISKLLLSDDFFLI-----ILREFDKDEIPEEIMKLIKKFYFQNPDFVPEKVNRASLACEGLCLWVIAIDKYSK  924 (1395)
T ss_pred             cCCChHHHHHHhhcccHHHH-----HhhcCccccChHHHHHHHHHhhcCCccCCHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence            467777777766  4 5888     9999999999999999996 69999999999999999999999999999999999


Q ss_pred             HHHHHhcchhhHHHHH----HHhHHhhchHHHHHHHHHHHHHHhhh
Q psy17141         85 LFKDIQRQYPSIIDCT----TIDWILDCPEQSLMEVAERFLETVDI  126 (141)
Q Consensus        85 v~~~v~Pk~~~L~~~~----~~~~~l~~~~~~L~~V~~~l~~l~~~  126 (141)
                      ++..|.|++..+..++    .....+....+.+.++.++++.+.+.
T Consensus       925 v~~~v~p~~~~~~~~e~~~~~~~~~l~~~~~~l~~~e~~~~~~~~~  970 (1395)
T KOG3595|consen  925 VLKVVEPKRQELARLEAELKAAMKELEEKSAELQDLEEKLQRLKDE  970 (1395)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999885    34667778888888888888877643

>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=98.49  E-value=1.3e-08  Score=80.19  Aligned_cols=88  Identities=26%  Similarity=0.571  Sum_probs=70.3

Q ss_pred             CCCHHHHHHHHhhhCCCC----CCHHHHHHHH------------------------HHHHhhchHHhhhhhhHHHHHHHh
Q psy17141         39 HIPEKILKKITNYVNLPD----FDPEEIGMVS------------------------VAAKSLSKWVMAIEKYAQLFKDIQ   90 (141)
Q Consensus        39 ~i~~~~l~~i~~~l~~p~----F~~e~i~~~S------------------------~Aa~~l~~WV~a~~~y~~v~~~v~   90 (141)
                      -..+..++.|+.++++++    |++|+...+.                        ..+..++|.|++|++.+..++...
T Consensus       100 i~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~  179 (268)
T PF12780_consen  100 IVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRC  179 (268)
T ss_dssp             SSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHH
T ss_pred             cchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHHHHhheeEEEEECCCCchHHHHH
Confidence            345678888888888765    7776655432                        346677889999999999999999


Q ss_pred             cchhhHHHHHHHhHHhhchHHHHHHHHHHHHHHhhh
Q psy17141         91 RQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDI  126 (141)
Q Consensus        91 Pk~~~L~~~~~~~~~l~~~~~~L~~V~~~l~~l~~~  126 (141)
                      ..+|+|.++|+++|+.+||+++|..|+.++.+..+.
T Consensus       180 ~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~~~~  215 (268)
T PF12780_consen  180 RSFPALVNCCTIDWFDPWPEEALLSVANKFLSDIEL  215 (268)
T ss_dssp             HHHCCHHHHSEEEEEES--HHHHHHHHHHHCCHHHT
T ss_pred             HhCcchhcccEEEeCCcCCHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999988766543

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]

Probab=98.47  E-value=5.6e-07  Score=83.69  Aligned_cols=89  Identities=10%  Similarity=0.091  Sum_probs=78.4

Q ss_pred             ecc-ccCChHHHHhcc--HhhhcccccccccccccC-CCCHHHHHHHH-hhhCCCCCCHHHHHHHHHHHHhhchHHhhhh
Q psy17141          6 VLY-YATGFSTAKVRF--PNYRKNCTRISLYEYDKD-HIPEKILKKIT-NYVNLPDFDPEEIGMVSVAAKSLSKWVMAIE   80 (141)
Q Consensus         6 ~~~-~~~~W~~ak~~l--~~f~~~~~~~~L~~fd~d-~i~~~~l~~i~-~~l~~p~F~~e~i~~~S~Aa~~l~~WV~a~~   80 (141)
                      +|+ ....|...++.+  ++|+.     .+.+|+.+ +++++....++ .+.+||.|+.+.+.++|+||+++..|+.+..
T Consensus      2223 LLgf~a~~w~~~qQ~LrrDDfi~-----~i~~y~~e~e~~~~~Rr~~E~~~~Sdp~ft~~~lnRaskacGPl~~Wl~~~c 2297 (3164)
T COG5245        2223 LLGFEAKIWFGEQQSLRRDDFIR-----IIGKYPDEIEFDLEARRFREARECSDPSFTGSILNRASKACGPLKRWLVREC 2297 (3164)
T ss_pred             HhcchhHHhhhHHHHhhhhhHHH-----HhccCCceeecCHHHHHHHHHHhcCCCcchhHHhhhhhhccCcHHHHHHHHh
Confidence            443 468899999999  79999     99999754 47888888887 7999999999999999999999999999999


Q ss_pred             hhHHHHHHHhcchhhHHHH
Q psy17141         81 KYAQLFKDIQRQYPSIIDC   99 (141)
Q Consensus        81 ~y~~v~~~v~Pk~~~L~~~   99 (141)
                      .|..|...+.|.+.....-
T Consensus      2298 n~skvLE~~~plr~E~kRI 2316 (3164)
T COG5245        2298 NRSKVLEVKIPLREEEKRI 2316 (3164)
T ss_pred             hHHHhhhhcccchhHHHhh
Confidence            9999999999999876643

>KOG3595|consensus

Probab=95.57  E-value=0.028  Score=53.49  Aligned_cols=60  Identities=28%  Similarity=0.563  Sum_probs=55.1

Q ss_pred             HHHHhhchHHhhhhhhHHHHHHHhcchhhHHHHHHHhHHhhchHHHHHHHHHHHHHHhhh
Q psy17141         67 VAAKSLSKWVMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDI  126 (141)
Q Consensus        67 ~Aa~~l~~WV~a~~~y~~v~~~v~Pk~~~L~~~~~~~~~l~~~~~~L~~V~~~l~~l~~~  126 (141)
                      ..+....|.|+++++.++.++.+..++|++.+.|+++|+.+|+.++|..|.+.+...+..
T Consensus       592 ~~~~~~l~~vl~~~~~g~~~~~r~~~~pal~~~~~i~w~~~w~~~al~~v~~~~l~~~~~  651 (1395)
T KOG3595|consen  592 FRVRRNLHVVLSVSPVGDAFRLRARKFPALVNRCTIDWFDSWPTEALLSVAEEFLASQDI  651 (1395)
T ss_pred             HHHHHhcceeEEeCchhhHHHHHHHhChhhhccchhhhcccCCHHHHHHHHHHHHhhhcC
Confidence            457777889999999999999999999999999999999999999999999999887643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	141
2rr7_A	155	Microtubule Binding Domain Of Dynein-C Length = 155		6e-09

>pdb|2RR7|A Chain A, Microtubule Binding Domain Of Dynein-C Length = 155

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 31  SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
           SL ++DKDHIP +++ KI  +   P+F P+ I   SVA   L  WV+A+EKY ++ K+++
Sbjct: 87  SLRKFDKDHIPPEVIVKIRPFAQDPEFQPKVIEKQSVACAGLCSWVIALEKYDKVIKEVE 146

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	141
2rr7_A	155	Dynein heavy chain 9; microtubule-binding, stalk h	5e-21
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	2e-10
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD, antiparallel coil, motor protein, DSH; NMR {Chlamydomonas reinhardtii} Length = 155

 Score = 81.9 bits (203), Expect = 5e-21
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query: 31  SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDI 89
           SL ++DKDHIP +++ KI  +   P+F P+ I   SVA   L  WV+A+EKY ++ K++
Sbjct: 87  SLRKFDKDHIPPEVIVKIRPFAQDPEFQPKVIEKQSVACAGLCSWVIALEKYDKVIKEV 145

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 56.4 bits (136), Expect = 2e-10
 Identities = 8/45 (17%), Positives = 19/45 (42%)

Query: 86   FKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETN 130
            F +     P++ +   +DW  +   ++L +V   F   +D+    
Sbjct: 1791 FHNRSATSPALFNRCVLDWFGEWSPEALFQVGSEFTRNLDLENPQ 1835

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695

 Score = 53.3 bits (128), Expect = 3e-09
 Identities = 7/52 (13%), Positives = 24/52 (46%)

Query: 86   FKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETNVLEVQIR 137
                    P++ +   I+W+ D   +++ +VA   ++ + +  T+ +  ++ 
Sbjct: 1754 KSSAMISSPALFNRCIINWMGDWDTKTMSQVANNMVDVIPMEFTDFIVPEVN 1805

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 21/114 (18%), Positives = 52/114 (45%), Gaps = 13/114 (11%)

Query: 28  TRISLYEYDKDHIPEKILKKITNYVNLPDFD-PEEIG-----MVSVAAKSLSKWVMAIEK 81
           T ISL  +     P+++   +  Y++    D P E+       +S+ A+S+   +   + 
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 82  YAQLFKDIQRQYPSIIDCTTIDWILDCPE-QSLMEVAERFLETVDILETNVLEV 134
           +  +  D   +  +II+ ++++ +L+  E + + +    F  +  I  T +L +
Sbjct: 347 WKHVNCD---KLTTIIE-SSLN-VLEPAEYRKMFDRLSVFPPSAHI-PTILLSL 394

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	141
2rr7_A	155	Dynein heavy chain 9; microtubule-binding, stalk h	99.89
3err_A	536	Fusion protein of microtubule binding domain from	99.81
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.32
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.12
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	86.79

>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD, antiparallel coil, motor protein, DSH; NMR {Chlamydomonas reinhardtii}

Probab=99.89  E-value=1.4e-25  Score=162.32  Aligned_cols=83  Identities=31%  Similarity=0.616  Sum_probs=79.6

Q ss_pred             CChHHHHhcc--HhhhcccccccccccccCCCCHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHhhhhhhHHHHHH
Q psy17141         11 TGFSTAKVRF--PNYRKNCTRISLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKD   88 (141)
Q Consensus        11 ~~W~~ak~~l--~~f~~~~~~~~L~~fd~d~i~~~~l~~i~~~l~~p~F~~e~i~~~S~Aa~~l~~WV~a~~~y~~v~~~   88 (141)
                      ++|.++|++|  ++|++     +|.+||+|+|++.++++|++|+.+|+|+++.+.++|.||++||.||+||+.|+.|+++
T Consensus        70 ~~W~~~k~~l~~~~Fl~-----~L~~fdkd~I~~~~~~~l~~yl~~p~f~~e~v~~~S~Aa~~Lc~WV~A~~~y~~v~k~  144 (155)
T 2rr7_A           70 DYWEASKKMLMEFDFLD-----SLRKFDKDHIPPEVIVKIRPFAQDPEFQPKVIEKQSVACAGLCSWVIALEKYDKVIKE  144 (155)
T ss_dssp             CHHHHHHHHHSCSSHHH-----HHHHSCGGGCCHHHHTTSTTTSSCTTSSHHHHHHHCTTTHHHHHHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHhchHHHHH-----HHHhcCcccChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999998  79999     9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcchhhHHH
Q psy17141         89 IQRQYPSIID   98 (141)
Q Consensus        89 v~Pk~~~L~~   98 (141)
                      |.|++.+|.+
T Consensus       145 V~Pkr~~l~~  154 (155)
T 2rr7_A          145 VEPKRQKLRE  154 (155)
T ss_dssp             SSCCCSSSSC
T ss_pred             HhhHHHHHhh
Confidence            9999988764

>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A

Probab=99.81  E-value=1.7e-20  Score=158.06  Aligned_cols=91  Identities=21%  Similarity=0.421  Sum_probs=83.8

Q ss_pred             eeccc-cCChHHHHhcc--HhhhcccccccccccccCCCCHHHHHHHH-hhhCCCCCCHHHHHHHHHHHHhhchHHhhhh
Q psy17141          5 MVLYY-ATGFSTAKVRF--PNYRKNCTRISLYEYDKDHIPEKILKKIT-NYVNLPDFDPEEIGMVSVAAKSLSKWVMAIE   80 (141)
Q Consensus         5 ~~~~~-~~~W~~ak~~l--~~f~~~~~~~~L~~fd~d~i~~~~l~~i~-~~l~~p~F~~e~i~~~S~Aa~~l~~WV~a~~   80 (141)
                      ++++. +++|.++|++|  ++|++     +|.+||+|+|++.++++|+ +|+.+|+|+|+.+.++|.||++||.||+||+
T Consensus        99 iLl~~~~~~W~~ak~~L~~~~Fl~-----~L~~fdkd~I~~~~~~~l~~~y~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~  173 (536)
T 3err_A           99 LLLGESTTDWKQIRSIIMRENFIP-----TIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQL  173 (536)
T ss_dssp             HHTTCSCCCHHHHTTGGGCTTHHH-----HHHHCCGGGCCHHHHHHHHHHTTTSTTCSHHHHHHHCTTHHHHHHHHHHHH
T ss_pred             HHhCCCCCCHHHHhhccCcHHHHH-----HHHhcCcccCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            33444 58999999988  79999     9999999999999999997 7999999999999999999999999999999


Q ss_pred             hhHHHHHHHhcchhhHHHHH
Q psy17141         81 KYAQLFKDIQRQYPSIIDCT  100 (141)
Q Consensus        81 ~y~~v~~~v~Pk~~~L~~~~  100 (141)
                      .|+.+.++|.|++.++.+++
T Consensus       174 ~Y~~l~~eV~pLk~eLk~lE  193 (536)
T 3err_A          174 NYADMLKRVEPLRNELQKLE  193 (536)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHhhhhhHHHHHHHH
Confidence            99999999999999888653

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.32  E-value=2.3e-07  Score=89.75  Aligned_cols=88  Identities=15%  Similarity=0.251  Sum_probs=74.3

Q ss_pred             ccCCCCHHHHHHHHhhhCCCC----CCHHHHHHHH-------------------------HHHHhhchHHhhhhhhHHHH
Q psy17141         36 DKDHIPEKILKKITNYVNLPD----FDPEEIGMVS-------------------------VAAKSLSKWVMAIEKYAQLF   86 (141)
Q Consensus        36 d~d~i~~~~l~~i~~~l~~p~----F~~e~i~~~S-------------------------~Aa~~l~~WV~a~~~y~~v~   86 (141)
                      |..-..++.++.|+.+|++++    |..|+...+.                         ..+..++|.|++|+|.|+.+
T Consensus      1675 D~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~~i~~~~r~~~~~~g~~~~t~~~l~~~Fi~rvr~NLHvVL~mSP~g~~f 1754 (2695)
T 4akg_A         1675 ESNILETAFLERMNTLLANADIPDLFQGEEYDKLLNNLRNKTRSLGLLLDTEQELYDWFVGEIAKNLHVVFTICDPTNNK 1754 (2695)
T ss_dssp             TTTCCSHHHHHHHHHHHHSSSCTTTSCTHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHCEEEEEESCTTSHH
T ss_pred             ccccccHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHhHHHHHhcCCCCCCHHHHHHHHHHHHHHcCEEEEEECCCChHH
Confidence            334467899999999998866    8877755442                         23566788999999999999


Q ss_pred             HHHhcchhhHHHHHHHhHHhhchHHHHHHHHHHHHHH
Q psy17141         87 KDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLET  123 (141)
Q Consensus        87 ~~v~Pk~~~L~~~~~~~~~l~~~~~~L~~V~~~l~~l  123 (141)
                      +.+..++|+|.++|+++|+.+||+++|..|+.++.+.
T Consensus      1755 r~R~r~fPaLvn~ctIdWf~~Wp~eAL~~Va~~fl~~ 1791 (2695)
T 4akg_A         1755 SSAMISSPALFNRCIINWMGDWDTKTMSQVANNMVDV 1791 (2695)
T ss_dssp             HHHHHHSHHHHHHSEEEECCSCCHHHHHHHHHHHSCS
T ss_pred             HHHHHhChHhhcceeEeecCCCCHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999988754

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.12  E-value=1.8e-07  Score=91.34  Aligned_cols=86  Identities=14%  Similarity=0.338  Sum_probs=65.7

Q ss_pred             CCCCHHHHHHHHhhhCCCC----CCHHHHHHH-------------------------HHHHHhhchHHhhhhhhHHHHHH
Q psy17141         38 DHIPEKILKKITNYVNLPD----FDPEEIGMV-------------------------SVAAKSLSKWVMAIEKYAQLFKD   88 (141)
Q Consensus        38 d~i~~~~l~~i~~~l~~p~----F~~e~i~~~-------------------------S~Aa~~l~~WV~a~~~y~~v~~~   88 (141)
                      .-..+.+++.|+.+|++++    |..|+...+                         ...+..++|.|++|+|.|+.||.
T Consensus      1714 qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~~i~~~~r~~a~~~g~~~dt~~~l~~~Fi~rvr~NLHvVL~mSPvg~~fR~ 1793 (3245)
T 3vkg_A         1714 NVLESSFLERMNTLLAGGEVPGLFEGEEFTALMHACKETAQRNGLILDSEEELYKYFTSQVRRNLHVVFTMNPASPDFHN 1793 (3245)
T ss_dssp             GCSSTHHHHHHHHHHHHSCCTTSSCTTTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHTTTCCEEEEECTTSTTTTC
T ss_pred             ccccHHHHHHHHHHhccCCccccCCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCEEEEEECCCCHHHHH
Confidence            3356677888888777654    665554433                         23456678899999999999999


Q ss_pred             HhcchhhHHHHHHHhHHhhchHHHHHHHHHHHHHH
Q psy17141         89 IQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLET  123 (141)
Q Consensus        89 v~Pk~~~L~~~~~~~~~l~~~~~~L~~V~~~l~~l  123 (141)
                      +..++|+|.++|+++|+.+||+++|..|+.++...
T Consensus      1794 R~r~fPaLvncctIDWf~~Wp~eAL~~Va~~fl~~ 1828 (3245)
T 3vkg_A         1794 RSATSPALFNRCVLDWFGEWSPEALFQVGSEFTRN 1828 (3245)
T ss_dssp             ----CTHHHHHSEEEEEESCCHHHHHHHHHHHTTT
T ss_pred             HHHHChHHhhCceeeecCCCCHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999988653

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=86.79  E-value=0.74  Score=46.16  Aligned_cols=51  Identities=6%  Similarity=-0.007  Sum_probs=39.7

Q ss_pred             hcchhhHHHHH----HHhHHhhchHHHHHHHHHHHHHHhhh----------hHHHHHHHHHhhhc
Q psy17141         90 QRQYPSIIDCT----TIDWILDCPEQSLMEVAERFLETVDI----------LETNVLEVQIRLYF  140 (141)
Q Consensus        90 ~Pk~~~L~~~~----~~~~~l~~~~~~L~~V~~~l~~l~~~----------~~~~~~~~~~rl~~  140 (141)
                      +||+.+|.+++    .++..|...++.|.+|++++..+++.          ++.+++.|++||.-
T Consensus      2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~r 2074 (3245)
T 3vkg_A         2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDR 2074 (3245)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999998885    35677888899999999998888753          56677888888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00