Psyllid ID: psy17173
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1108 | 2.2.26 [Sep-21-2011] | |||||||
| P26675 | 1596 | Protein son of sevenless | yes | N/A | 0.917 | 0.637 | 0.497 | 0.0 | |
| Q62245 | 1319 | Son of sevenless homolog | yes | N/A | 0.953 | 0.800 | 0.447 | 0.0 | |
| Q07889 | 1333 | Son of sevenless homolog | yes | N/A | 0.949 | 0.789 | 0.447 | 0.0 | |
| Q07890 | 1332 | Son of sevenless homolog | no | N/A | 0.951 | 0.791 | 0.447 | 0.0 | |
| Q02384 | 1333 | Son of sevenless homolog | no | N/A | 0.953 | 0.792 | 0.444 | 0.0 | |
| Q8IS14 | 812 | Ras guanine nucleotide ex | yes | N/A | 0.365 | 0.498 | 0.318 | 6e-52 | |
| Q54TK8 | 1502 | Ras guanine nucleotide ex | no | N/A | 0.351 | 0.258 | 0.328 | 4e-51 | |
| Q54PQ4 | 605 | Ras guanine nucleotide ex | no | N/A | 0.359 | 0.657 | 0.311 | 4e-48 | |
| Q8IS15 | 824 | Ras guanine nucleotide ex | no | N/A | 0.347 | 0.467 | 0.305 | 5e-48 | |
| Q55GH9 | 1172 | Ras guanine nucleotide ex | no | N/A | 0.347 | 0.328 | 0.296 | 8e-46 |
| >sp|P26675|SOS_DROME Protein son of sevenless OS=Drosophila melanogaster GN=Sos PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1038 bits (2683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/1052 (49%), Positives = 730/1052 (69%), Gaps = 35/1052 (3%)
Query: 15 DNCDFHEAYNENRWKGTLVSSLHSILKQVHNSLDINTDALYYTEKLILKLLNLLCSKPLP 74
D DF + N RW+G SL +L+QVH + DAL Y EKL L+LL +LC+KPLP
Sbjct: 56 DGYDFTKCENAARWRGLFTPSLKKVLEQVHPRVTAKEDALLYVEKLCLRLLAMLCAKPLP 115
Query: 75 LTTSDMEGKIKKYFPNPISEWTFNEAKQALEKGKKKSSLVISIDRVQNILQKEFYFRKVE 134
+ D+E K+ K FP PI +W NEAK+ + K+KS V+ ++V +LQK+ K++
Sbjct: 116 HSVQDVEEKVNKSFPAPIDQWALNEAKEVINSKKRKS--VLPTEKVHTLLQKDVLQYKID 173
Query: 135 TNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALLELFFQED--- 191
+++ + AVL+Y++AD+LK+ G+YV I +I+ +DI+V M AD+ L+++ Q +
Sbjct: 174 SSVSAFLVAVLEYISADILKMAGDYVIKIAHCEITKEDIEVVMNADRVLMDMLNQSEAHI 233
Query: 192 -DDPVYLEPQVQSNNVVLHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKE 250
P+ L Q S YE+ V + + +EK + R+L +I+++F EEL KI + + +E
Sbjct: 234 LPSPLSLPAQRASAT----YEETVKELIHDEKQYQRDLHMIIRVFREELVKI--VSDPRE 287
Query: 251 VHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDH--CIGSCFEEFAEDAEFDVYEKLLHNI 308
+ +F I +IY +TV LLG++ED+ EMS + C+GSCFEE AE EFDVY+K +++
Sbjct: 288 LEPIFSNIMDIYEVTVTLLGSLEDVIEMSQEQSAPCVGSCFEELAEAEEFDVYKKYAYDV 347
Query: 309 VNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHS 368
+Q S + L+ +++P ++L AG+GF++ VKYYLP LL+ P+ H +YF+YIK
Sbjct: 348 TSQASRDALNNLLSKPGA-SSLTTAGHGFRDAVKYYLPKLLLVPICHAFVYFDYIKHLKD 406
Query: 369 LTDSSKDKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKN 428
L+ S D E EQ QGLL PL L K+ + K V RV+ ++E+ EL+
Sbjct: 407 LSSSQDDIESFEQVQGLLHPLHCDLEKV-MASLSKERQVPVSGRVRRQLAIERTRELQMK 465
Query: 429 VDGVDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVPIN 488
V+ + +D+ EF RED+L K +ERKV+ FDG+++LCK+N K +
Sbjct: 466 VEHWEDKDVGQNCNEFIREDSLSKLGSGKRIWSERKVFLFDGLMVLCKANTKKQTP---S 522
Query: 489 VVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSD 548
++ Y+++ KE YF+R+V+IND ++DD+KN+FE+APR QP I++ K+ + K W +D
Sbjct: 523 AGATAYDYRLKEKYFMRRVDINDRPDSDDLKNSFELAPRMQPPIVLTAKNAQHKHDWMAD 582
Query: 549 LIMVNTKSMLERTLDSIILDEEKKHPLRMPSPEYYSFAEPDSCENIILEEKQNTNMPLIK 608
L+MV TKSML+R LDSI+ D E+KHPLRMPSPE Y FA PDS +NI+LEE+++ +P+IK
Sbjct: 583 LLMVITKSMLDRHLDSILQDIERKHPLRMPSPEIYKFAVPDSGDNIVLEERESAGVPMIK 642
Query: 609 GATLHKLIERLTYHIYADPAFIGTFLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNA 668
GATL KLIERLTYHIYADP F+ TFLTTYR F +P +LL LL++RFN+PDP+ V+++
Sbjct: 643 GATLCKLIERLTYHIYADPTFVRTFLTTYRYFCSPQQLLQLLVERFNIPDPSLVYQDTGT 702
Query: 669 DI------------EESILREDIIRYKKELCQPVQFRVLNVFRQWVQHHFYDFQRDQNLL 716
++ RED RY+KE QPVQFRVLNV R WV HHFYDF++D LL
Sbjct: 703 AGAGGMGGVGGDKEHKNSHREDWKRYRKEYVQPVQFRVLNVLRHWVDHHFYDFEKDPMLL 762
Query: 717 EKLKSFLLNEISGKSLRKWADIVLNLIQRK--ELDLEKEITFAFNNSPPPIEVHVPINSI 774
EKL +FL ++GKS+RKW D VL ++QRK + K+I +A+ + PPPIE H+ + +
Sbjct: 763 EKLLNFL-EHVNGKSMRKWVDSVLKIVQRKNEQEKSNKKIVYAYGHDPPPIEHHLSVPN- 820
Query: 775 DEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNF 834
DE +L HP+E+ARQLTLLEF+ +++VKPSELVGS WTKK+K SPNL+KIMKHTTN
Sbjct: 821 DEITLLTLHPLELARQLTLLEFEMYKNVKPSELVGSPWTKKDKEVKSPNLLKIMKHTTNV 880
Query: 835 TRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQ 894
TRW+EK I EAEN++ERLAIM R IE+M+V+ +LNNFNG+L++ +AMG+A+VYRLR+TFQ
Sbjct: 881 TRWIEKSITEAENYEERLAIMQRAIEVMMVMLELNNFNGILSIVAAMGTASVYRLRWTFQ 940
Query: 895 ALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDS 954
LP R +K LE+ REL+ DH KKYQE+LR+INPPC+PFFG YLTNILH+EEGNPD L ++
Sbjct: 941 GLPERYRKFLEECRELSDDHLKKYQERLRSINPPCVPFFGRYLTNILHLEEGNPDLLANT 1000
Query: 955 KLINFTKRRKVAEIISEIQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCNILFEQS 1014
+LINF+KRRKVAEII EIQQYQN+PYCL+ R+FFE L PF G+ D +M + L+ +S
Sbjct: 1001 ELINFSKRRKVAEIIGEIQQYQNQPYCLNEESTIRQFFEQLDPFNGLSDKQMSDYLYNES 1060
Query: 1015 LLIEPRHATHVPKFPRKWPNISLKSPLVKIKK 1046
L IEPR VPKFPRKWP+I LKSP +K ++
Sbjct: 1061 LRIEPRGCKTVPKFPRKWPHIPLKSPGIKPRR 1092
|
Promotes the exchange of Ras-bound GDP by GTP. Functions in signaling pathways initiated by the sevenless and epidermal growth factor receptor tyrosine kinases; implies a role for the ras pathway in neuronal development. Drosophila melanogaster (taxid: 7227) |
| >sp|Q62245|SOS1_MOUSE Son of sevenless homolog 1 OS=Mus musculus GN=Sos1 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q07889|SOS1_HUMAN Son of sevenless homolog 1 OS=Homo sapiens GN=SOS1 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q07890|SOS2_HUMAN Son of sevenless homolog 2 OS=Homo sapiens GN=SOS2 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q02384|SOS2_MOUSE Son of sevenless homolog 2 OS=Mus musculus GN=Sos2 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q8IS14|GEFJ_DICDI Ras guanine nucleotide exchange factor J OS=Dictyostelium discoideum GN=gefJ PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q54TK8|GEFP_DICDI Ras guanine nucleotide exchange factor P OS=Dictyostelium discoideum GN=gefP PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q54PQ4|GEFA_DICDI Ras guanine nucleotide exchange factor A OS=Dictyostelium discoideum GN=gefA PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q8IS15|GEFI_DICDI Ras guanine nucleotide exchange factor I OS=Dictyostelium discoideum GN=gefI PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q55GH9|GEFW_DICDI Ras guanine nucleotide exchange factor W OS=Dictyostelium discoideum GN=gefW PE=2 SV=1 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1108 | ||||||
| 332024491 | 1316 | Protein son of sevenless [Acromyrmex ech | 0.973 | 0.819 | 0.534 | 0.0 | |
| 242014971 | 1507 | ras GTP exchange factor, son of sevenles | 0.979 | 0.719 | 0.536 | 0.0 | |
| 350403473 | 1328 | PREDICTED: protein son of sevenless-like | 0.973 | 0.812 | 0.535 | 0.0 | |
| 340722962 | 1344 | PREDICTED: protein son of sevenless-like | 0.971 | 0.800 | 0.536 | 0.0 | |
| 350403467 | 1344 | PREDICTED: protein son of sevenless-like | 0.971 | 0.800 | 0.536 | 0.0 | |
| 307209796 | 1305 | Protein son of sevenless [Harpegnathos s | 0.933 | 0.792 | 0.541 | 0.0 | |
| 380022770 | 1343 | PREDICTED: protein son of sevenless-like | 0.933 | 0.769 | 0.550 | 0.0 | |
| 307176733 | 1286 | Protein son of sevenless [Camponotus flo | 0.938 | 0.808 | 0.525 | 0.0 | |
| 322789169 | 1170 | hypothetical protein SINV_03461 [Solenop | 0.926 | 0.877 | 0.541 | 0.0 | |
| 383865561 | 1337 | PREDICTED: protein son of sevenless-like | 0.965 | 0.800 | 0.536 | 0.0 |
| >gi|332024491|gb|EGI64689.1| Protein son of sevenless [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 1191 bits (3080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 599/1120 (53%), Positives = 795/1120 (70%), Gaps = 41/1120 (3%)
Query: 3 MFSSQLTLADFNDNCDFHEAYNENRWKGTLVSSLHSILKQVHNSLDINTDALYYTEKLIL 62
MFSS + DF + N +WKG V+SL +L+QVH SL+ DAL Y E LIL
Sbjct: 1 MFSSPASAVGEPSGYDFQKEENAAKWKGVFVNSLRKVLEQVHPSLEARQDALDYVESLIL 60
Query: 63 KLLNLLCSKPLPLTTSDMEGKIKKYFPNPISEWTFNEAKQALEKGKKKSSLVISIDRVQN 122
++L +LC P P T D+E ++++ FP PI W +A+ ALEKGKKKS LV+ +D++
Sbjct: 61 RMLGMLCGHPPPQTPQDVEERVRRTFPTPIDRWALRDARDALEKGKKKSPLVLPVDKIHQ 120
Query: 123 ILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKA 182
+LQKE K+++ + L+ VL+Y++AD+LKL GNYVKNIR V+IS +DI VAMYAD
Sbjct: 121 LLQKEVLQHKIDSQVSLFVVGVLEYISADILKLAGNYVKNIRHVEISCEDIRVAMYADMV 180
Query: 183 LLELFFQEDDDPVYLEPQVQSNNVVLH--YEQVVNDFVAEEKLFIRELKLILKIFYEELN 240
L+++F+Q+D Y E Q S V+ YE+ V D + +E+ +IR+L +I+K+F EE+
Sbjct: 181 LMDMFYQDD----YTEGQQSSLGTVVSQTYEESVRDLIHDERHYIRDLHMIIKVFREEIA 236
Query: 241 KITPLKEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSDDHC--IGSCFEEFAEDAEF 298
K++ ++ E+ +LF I +IY +T+ LLG++EDI E++ + +GSCFEE AE AEF
Sbjct: 237 KLS--QDKSELETLFSNIMDIYEVTMTLLGSLEDIMEITEEKQTPTVGSCFEELAEAAEF 294
Query: 299 DVYEKLLHNIVNQKSIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNL 358
DVY + +I + S EVL+ +++P L+ AG+GFKE VKYYLP LL+ P++HC L
Sbjct: 295 DVYIRYAKDINSSASREVLTNLLSRPEASTALRAAGHGFKEAVKYYLPKLLLQPIWHCFL 354
Query: 359 YFEYIKIFHSLTDSSKDKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQS 418
YF+YIK+ H T +++D E LEQ QGLL PLQ+ L + K+ +R +R + +
Sbjct: 355 YFDYIKVLHKRTPNTEDSETLEQVQGLLRPLQMELMQSVASLPKKDKGLRMQSRARRQAA 414
Query: 419 LEKIHELKKNVDGVDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCK-- 476
LEK EL+K VDG D RD+ EF REDTL K RLTERK FDG+L+LCK
Sbjct: 415 LEKTSELQKTVDGWDQRDIGQCCNEFIREDTLKKVASNGRRLTERKALLFDGLLVLCKPT 474
Query: 477 SNKKISVTVPINVVS------SQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQP 530
+K++SVTV +V+ Q E + KE F+RKV+I D E+T+++KNAFEIAPRD P
Sbjct: 475 GSKRVSVTVAAGIVAVGGHSTHQGELRLKERLFIRKVDIIDREDTEELKNAFEIAPRDHP 534
Query: 531 SIIIVTKSPEDKKSWFSDLIMVNTKSMLERTLDSIILDEEKKHPLRMPSPEYYSFAEPDS 590
++I+V KS EDK +W +DL+M+NTKSMLERTLDSI+LDEE+KHPLR+P Y FAE DS
Sbjct: 535 NVILVAKSVEDKNNWMADLVMLNTKSMLERTLDSILLDEERKHPLRLPPSHLYKFAEQDS 594
Query: 591 CENIILEEKQNTNMPLIKGATLHKLIERLTYHIYADPAFIGTFLTTYR-----SFTTPTE 645
ENI+LE ++N +PLIKGATL KL+ERLTYHIYADPAF+ TFLTTYR SF +P E
Sbjct: 595 PENIVLEARENGGVPLIKGATLIKLVERLTYHIYADPAFVRTFLTTYRQVEIASFCSPQE 654
Query: 646 LLDLLIDRFNVPDPNKVFENNNADIEESILREDIIRYKKELCQPVQFRVLNVFRQWVQHH 705
LL LLI+RF++PDP+ V+ +RED RY+KE CQPVQFRVLNV R WV HH
Sbjct: 655 LLALLIERFDIPDPSLVYGEEEKPSVCKTVREDWKRYRKEFCQPVQFRVLNVLRHWVDHH 714
Query: 706 FYDFQRDQNLLEKLKSFLLNEISGKSLRKWADIVLNLIQRK-ELDLEKEITFAFNNSPPP 764
FYDF+RD+NLLE+L+ FL + +SGKS+RKW D V+ ++QRK E ++ ITF+F SPP
Sbjct: 715 FYDFERDRNLLERLQLFL-DTVSGKSMRKWVDSVIKIVQRKCEPSEQRPITFSFERSPPS 773
Query: 765 IEVHVPINSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNL 824
IE H+ + DE+ IL HP+E+ARQLTLLEF+ +++VKPSELVGSVWTKK+K + SPNL
Sbjct: 774 IEWHLKVPE-DEYGILTLHPIELARQLTLLEFELYKTVKPSELVGSVWTKKDKEKTSPNL 832
Query: 825 IKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSA 884
+K++KHTTNFTRWLEK IVEAENFDER+AI++R IE+M+VLQ LNNFNGVLA+ SAMGSA
Sbjct: 833 LKMIKHTTNFTRWLEKTIVEAENFDERVAIVSRAIEIMMVLQDLNNFNGVLAIVSAMGSA 892
Query: 885 AVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIE 944
+V+RL+FTFQ L RL+K LE+ARELN DHF+KYQEKLR+INPPC+PFFGMYLTNILHIE
Sbjct: 893 SVFRLKFTFQQLNARLEKALEEARELNNDHFRKYQEKLRSINPPCVPFFGMYLTNILHIE 952
Query: 945 EGNPDFLPDSKLINFTKRRKVAEIISEIQQYQNEPYCLSVVPIYREFFENLSPFE-GIDD 1003
EGN D+LP ++LINF+KRRKVAEI EIQQYQN+PYCLSV R+F ENL PF+ + D
Sbjct: 953 EGNSDYLPGTELINFSKRRKVAEITGEIQQYQNQPYCLSVELKIRQFLENLCPFDPNMKD 1012
Query: 1004 NEMCNILFEQSLLIEPRHATHVPKFPRKWPNISLKSPLVKIKKTRVLSEL----PGFHFE 1059
++ N L+ +SL IEPR P+FPRKWP ++LKSP +K + R+ + L
Sbjct: 1013 ADISNYLYNKSLEIEPRGCRQPPRFPRKWPELNLKSPGIKARTGRLPAPLHVVTSNIRLH 1072
Query: 1060 ESAQSEVDE--PATP-----ITPSNHMGSNSDFSIFAPII 1092
+S+ + P TP +T H+G D S+FAP++
Sbjct: 1073 DSSADTLSHELPETPPHGPQLTTVPHIG---DHSVFAPVM 1109
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242014971|ref|XP_002428152.1| ras GTP exchange factor, son of sevenless, putative [Pediculus humanus corporis] gi|212512695|gb|EEB15414.1| ras GTP exchange factor, son of sevenless, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
| >gi|350403473|ref|XP_003486812.1| PREDICTED: protein son of sevenless-like isoform 2 [Bombus impatiens] | Back alignment and taxonomy information |
|---|
| >gi|340722962|ref|XP_003399868.1| PREDICTED: protein son of sevenless-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
| >gi|350403467|ref|XP_003486811.1| PREDICTED: protein son of sevenless-like isoform 1 [Bombus impatiens] | Back alignment and taxonomy information |
|---|
| >gi|307209796|gb|EFN86601.1| Protein son of sevenless [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
| >gi|380022770|ref|XP_003695210.1| PREDICTED: protein son of sevenless-like [Apis florea] | Back alignment and taxonomy information |
|---|
| >gi|307176733|gb|EFN66146.1| Protein son of sevenless [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
| >gi|322789169|gb|EFZ14555.1| hypothetical protein SINV_03461 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
| >gi|383865561|ref|XP_003708241.1| PREDICTED: protein son of sevenless-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1108 | ||||||
| FB|FBgn0001965 | 1596 | Sos "Son of sevenless" [Drosop | 0.954 | 0.662 | 0.466 | 3.6e-264 | |
| MGI|MGI:98354 | 1319 | Sos1 "son of sevenless homolog | 0.917 | 0.771 | 0.438 | 1e-248 | |
| UNIPROTKB|G5E9C8 | 1318 | SOS1 "Son of sevenless homolog | 0.917 | 0.771 | 0.438 | 1.7e-246 | |
| UNIPROTKB|Q07889 | 1333 | SOS1 "Son of sevenless homolog | 0.917 | 0.762 | 0.438 | 1.7e-246 | |
| UNIPROTKB|F1N7C3 | 1333 | SOS1 "Uncharacterized protein" | 0.908 | 0.755 | 0.437 | 2.2e-244 | |
| UNIPROTKB|F1Q118 | 1310 | SOS1 "Uncharacterized protein" | 0.896 | 0.758 | 0.440 | 2.9e-242 | |
| UNIPROTKB|D4A0Q9 | 1319 | Sos1 "Protein Sos1" [Rattus no | 0.917 | 0.771 | 0.427 | 3.3e-241 | |
| UNIPROTKB|D4A3T0 | 1317 | Sos1 "Protein Sos1" [Rattus no | 0.916 | 0.770 | 0.427 | 6.8e-241 | |
| UNIPROTKB|F1NMA4 | 1319 | F1NMA4 "Uncharacterized protei | 0.914 | 0.768 | 0.429 | 1e-237 | |
| UNIPROTKB|F1SHY0 | 1164 | SOS2 "Uncharacterized protein" | 0.912 | 0.868 | 0.441 | 1.4e-229 |
| FB|FBgn0001965 Sos "Son of sevenless" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2524 (893.6 bits), Expect = 3.6e-264, Sum P(2) = 3.6e-264
Identities = 510/1094 (46%), Positives = 715/1094 (65%)
Query: 15 DNCDFHEAYNENRWKGTLVSSLHSILKQVHNSLDINTDALYYTEXXXXXXXXXXXXXXXX 74
D DF + N RW+G SL +L+QVH + DAL Y E
Sbjct: 56 DGYDFTKCENAARWRGLFTPSLKKVLEQVHPRVTAKEDALLYVEKLCLRLLAMLCAKPLP 115
Query: 75 XTTSDMEGKIKKYFPNPISEWTFNEAKQALEKGKKKSSLVISIDRVQNILQKEFYFRKVE 134
+ D+E K+ K FP PI +W NEAK+ + K+KS V+ ++V +LQK+ K++
Sbjct: 116 HSVQDVEEKVNKSFPAPIDQWALNEAKEVINSKKRKS--VLPTEKVHTLLQKDVLQYKID 173
Query: 135 TNMXXXXXXXXXXXXXXXXKLVGNYVKNIRKVDISIQDIDVAMYADKALLELFFQEDDDP 194
+++ K+ G+YV I +I+ +DI+V M AD+ L+++ Q +
Sbjct: 174 SSVSAFLVAVLEYISADILKMAGDYVIKIAHCEITKEDIEVVMNADRVLMDMLNQSEAHI 233
Query: 195 VYLEPQVQSNNVVLHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSL 254
+ + + YE+ V + + +EK + R+L +I+++F EEL KI + + +E+ +
Sbjct: 234 LPSPLSLPAQRASATYEETVKELIHDEKQYQRDLHMIIRVFREELVKI--VSDPRELEPI 291
Query: 255 FEIIEEIYNLTVCLLGAVEDISEMSSDDH--CIGSCXXXXXXXXXXXVYEKLLHNIVNQK 312
F I +IY +TV LLG++ED+ EMS + C+GSC VY+K +++ +Q
Sbjct: 292 FSNIMDIYEVTVTLLGSLEDVIEMSQEQSAPCVGSCFEELAEAEEFDVYKKYAYDVTSQA 351
Query: 313 SIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSLTDS 372
S + L+ +++P ++L AG+GF++ VKYYLP LL+ P+ H +YF+YIK L+ S
Sbjct: 352 SRDALNNLLSKPGA-SSLTTAGHGFRDAVKYYLPKLLLVPICHAFVYFDYIKHLKDLSSS 410
Query: 373 SKDKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQSLEKIHELKKNVDGV 432
D E EQ QGLL PL L K+ + K V RV+ ++E+ EL+ V+
Sbjct: 411 QDDIESFEQVQGLLHPLHCDLEKV-MASLSKERQVPVSGRVRRQLAIERTRELQMKVEHW 469
Query: 433 DVRDLRPYLEEFYREDTLMKYDGKSNRL-TERKVYFFDGVLILCKSNKKISVTVPINVVS 491
+ +D+ EF RED+L K G R+ +ERKV+ FDG+++LCK+N K P + +
Sbjct: 470 EDKDVGQNCNEFIREDSLSKL-GSGKRIWSERKVFLFDGLMVLCKANTKKQT--P-SAGA 525
Query: 492 SQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIM 551
+ Y+++ KE YF+R+V+IND ++DD+KN+FE+APR QP I++ K+ + K W +DL+M
Sbjct: 526 TAYDYRLKEKYFMRRVDINDRPDSDDLKNSFELAPRMQPPIVLTAKNAQHKHDWMADLLM 585
Query: 552 VNTKSMLERTLDSIILDEEKKHPLRMPSPEYYSFAEPDSCENIILEEKQNTNMPLIKGAT 611
V TKSML+R LDSI+ D E+KHPLRMPSPE Y FA PDS +NI+LEE+++ +P+IKGAT
Sbjct: 586 VITKSMLDRHLDSILQDIERKHPLRMPSPEIYKFAVPDSGDNIVLEERESAGVPMIKGAT 645
Query: 612 LHKLIERLTYHIYADPAFIGTFLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNA--- 668
L KLIERLTYHIYADP F+ TFLTTYR F +P +LL LL++RFN+PDP+ V+++
Sbjct: 646 LCKLIERLTYHIYADPTFVRTFLTTYRYFCSPQQLLQLLVERFNIPDPSLVYQDTGTAGA 705
Query: 669 --------DIE-ESILREDIIRYKKELCQPVQFRVLNVFRQWVQHHFYDFQRDQNLLEKL 719
D E ++ RED RY+KE QPVQFRVLNV R WV HHFYDF++D LLEKL
Sbjct: 706 GGMGGVGGDKEHKNSHREDWKRYRKEYVQPVQFRVLNVLRHWVDHHFYDFEKDPMLLEKL 765
Query: 720 KSFLLNEISGKSLRKWADIVLNLIQRK--ELDLEKEITFAFNNSPPPIEVHVPINSIDEF 777
+FL ++GKS+RKW D VL ++QRK + K+I +A+ + PPPIE H+ + + DE
Sbjct: 766 LNFL-EHVNGKSMRKWVDSVLKIVQRKNEQEKSNKKIVYAYGHDPPPIEHHLSVPN-DEI 823
Query: 778 NILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRW 837
+L HP+E+ARQLTLLEF+ +++VKPSELVGS WTKK+K SPNL+KIMKHTTN TRW
Sbjct: 824 TLLTLHPLELARQLTLLEFEMYKNVKPSELVGSPWTKKDKEVKSPNLLKIMKHTTNVTRW 883
Query: 838 LEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALP 897
+EK I EAEN++ERLAIM R IE+M+V+ +LNNFNG+L++ +AMG+A+VYRLR+TFQ LP
Sbjct: 884 IEKSITEAENYEERLAIMQRAIEVMMVMLELNNFNGILSIVAAMGTASVYRLRWTFQGLP 943
Query: 898 TRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDSKLI 957
R +K LE+ REL+ DH KKYQE+LR+INPPC+PFFG YLTNILH+EEGNPD L +++LI
Sbjct: 944 ERYRKFLEECRELSDDHLKKYQERLRSINPPCVPFFGRYLTNILHLEEGNPDLLANTELI 1003
Query: 958 NFTKRRKVAEIISEIQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCNILFEQSLLI 1017
NF+KRRKVAEII EIQQYQN+PYCL+ R+FFE L PF G+ D +M + L+ +SL I
Sbjct: 1004 NFSKRRKVAEIIGEIQQYQNQPYCLNEESTIRQFFEQLDPFNGLSDKQMSDYLYNESLRI 1063
Query: 1018 EPRHATHVPKFPRKWPNISLKSPLVKIKK---TRVLSELPGFHFEESAQSEVDEPATPIT 1074
EPR VPKFPRKWP+I LKSP +K ++ T S+L +A + AT I
Sbjct: 1064 EPRGCKTVPKFPRKWPHIPLKSPGIKPRRQNQTNSSSKLSNSTSSVAAAAAASSTATSIA 1123
Query: 1075 ----PSNHMGSNSD 1084
PS H S D
Sbjct: 1124 TASAPSLHASSIMD 1137
|
|
| MGI|MGI:98354 Sos1 "son of sevenless homolog 1 (Drosophila)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G5E9C8 SOS1 "Son of sevenless homolog 1 (Drosophila), isoform CRA_d" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q07889 SOS1 "Son of sevenless homolog 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1N7C3 SOS1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1Q118 SOS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|D4A0Q9 Sos1 "Protein Sos1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|D4A3T0 Sos1 "Protein Sos1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NMA4 F1NMA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SHY0 SOS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q62245 | SOS1_MOUSE | No assigned EC number | 0.4471 | 0.9530 | 0.8006 | yes | N/A |
| Q07889 | SOS1_HUMAN | No assigned EC number | 0.4478 | 0.9494 | 0.7891 | yes | N/A |
| P26675 | SOS_DROME | No assigned EC number | 0.4971 | 0.9178 | 0.6372 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1108 | |||
| smart00147 | 242 | smart00147, RasGEF, Guanine nucleotide exchange fa | 6e-62 | |
| cd00155 | 237 | cd00155, RasGEF, Guanine nucleotide exchange facto | 4e-61 | |
| pfam00617 | 185 | pfam00617, RasGEF, RasGEF domain | 9e-58 | |
| cd01261 | 109 | cd01261, PH_SOS, Son of Sevenless (SOS) Pleckstrin | 9e-33 | |
| cd06224 | 122 | cd06224, REM, Guanine nucleotide exchange factor f | 1e-27 | |
| smart00229 | 127 | smart00229, RasGEFN, Guanine nucleotide exchange f | 2e-25 | |
| pfam00618 | 94 | pfam00618, RasGEF_N, RasGEF N-terminal motif | 4e-21 | |
| smart00325 | 180 | smart00325, RhoGEF, Guanine nucleotide exchange fa | 6e-17 | |
| cd00160 | 181 | cd00160, RhoGEF, Guanine nucleotide exchange facto | 2e-16 | |
| pfam00621 | 179 | pfam00621, RhoGEF, RhoGEF domain | 6e-10 | |
| smart00233 | 102 | smart00233, PH, Pleckstrin homology domain | 1e-08 | |
| pfam00169 | 101 | pfam00169, PH, PH domain | 2e-07 | |
| cd00074 | 115 | cd00074, H2A, Histone 2A; H2A is a subunit of the | 1e-06 | |
| PTZ00017 | 134 | PTZ00017, PTZ00017, histone H2A; Provisional | 3e-06 | |
| PLN00153 | 129 | PLN00153, PLN00153, histone H2A; Provisional | 1e-05 | |
| PLN00157 | 132 | PLN00157, PLN00157, histone H2A; Provisional | 1e-05 | |
| smart00414 | 106 | smart00414, H2A, Histone 2A | 1e-05 | |
| COG5262 | 132 | COG5262, HTA1, Histone H2A [Chromatin structure an | 2e-05 | |
| PLN00156 | 139 | PLN00156, PLN00156, histone H2AX; Provisional | 4e-05 | |
| PTZ00252 | 134 | PTZ00252, PTZ00252, histone H2A; Provisional | 1e-04 | |
| cd01220 | 123 | cd01220, PH1_FARP1-like, FERM, RhoGEF and pleckstr | 0.002 |
| >gnl|CDD|214539 smart00147, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases | Back alignment and domain information |
|---|
Score = 210 bits (538), Expect = 6e-62
Identities = 95/247 (38%), Positives = 156/247 (63%), Gaps = 11/247 (4%)
Query: 779 ILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSP-NLIKIMKHTTNFTRW 837
+L+ P E+A QLTLL+F+ FR + PSEL+GSVW K++K SP NL ++ + W
Sbjct: 1 LLLLDPKELAEQLTLLDFELFRKIDPSELLGSVWGKRSKKSPSPLNLEAFIRRFNEVSNW 60
Query: 838 LEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALP 897
+ I++ +R ++++ I++ ++LNNFN ++A+ SA+ S+ + RL+ T++ LP
Sbjct: 61 VATEILKQTTPKDRAELLSKFIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEKLP 120
Query: 898 TRLQKVLEDAREL--NGDHFKKYQEKLRNIN-PPCIPFFGMYLTNILHIEEGNPDFLPDS 954
++ +K+ E+ EL ++K Y+E L + N PPCIPF G+ L ++ I+EGNPDFL +
Sbjct: 121 SKYKKLFEELEELLSPERNYKNYREALSSCNLPPCIPFLGVLLKDLTFIDEGNPDFLEN- 179
Query: 955 KLINFTKRRKVAEIISEIQQYQNEPYCLSVVPIY-REFFENLSPFEGIDDNEMCNILFEQ 1013
L+NF KRR++AEI+ EI+Q Q++PY L + + L + +D+ E L++
Sbjct: 180 GLVNFEKRRQIAEILREIRQLQSQPYNLRPNRSDIQSLLQQL--LDHLDEEE---ELYQL 234
Query: 1014 SLLIEPR 1020
SL IEPR
Sbjct: 235 SLKIEPR 241
|
Length = 242 |
| >gnl|CDD|238087 cd00155, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases | Back alignment and domain information |
|---|
| >gnl|CDD|216025 pfam00617, RasGEF, RasGEF domain | Back alignment and domain information |
|---|
| >gnl|CDD|241292 cd01261, PH_SOS, Son of Sevenless (SOS) Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >gnl|CDD|100121 cd06224, REM, Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif) | Back alignment and domain information |
|---|
| >gnl|CDD|214571 smart00229, RasGEFN, Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif | Back alignment and domain information |
|---|
| >gnl|CDD|216026 pfam00618, RasGEF_N, RasGEF N-terminal motif | Back alignment and domain information |
|---|
| >gnl|CDD|214619 smart00325, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases | Back alignment and domain information |
|---|
| >gnl|CDD|238091 cd00160, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain | Back alignment and domain information |
|---|
| >gnl|CDD|216028 pfam00621, RhoGEF, RhoGEF domain | Back alignment and domain information |
|---|
| >gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|215766 pfam00169, PH, PH domain | Back alignment and domain information |
|---|
| >gnl|CDD|238029 cd00074, H2A, Histone 2A; H2A is a subunit of the nucleosome | Back alignment and domain information |
|---|
| >gnl|CDD|185399 PTZ00017, PTZ00017, histone H2A; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|165721 PLN00153, PLN00153, histone H2A; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|177758 PLN00157, PLN00157, histone H2A; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|197711 smart00414, H2A, Histone 2A | Back alignment and domain information |
|---|
| >gnl|CDD|227587 COG5262, HTA1, Histone H2A [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >gnl|CDD|215080 PLN00156, PLN00156, histone H2AX; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240330 PTZ00252, PTZ00252, histone H2A; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|241255 cd01220, PH1_FARP1-like, FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins Pleckstrin Homology (PH) domain, repeat 1 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1108 | |||
| KOG3629|consensus | 728 | 100.0 | ||
| smart00147 | 242 | RasGEF Guanine nucleotide exchange factor for Ras- | 100.0 | |
| cd00155 | 237 | RasGEF Guanine nucleotide exchange factor for Ras- | 100.0 | |
| KOG4424|consensus | 623 | 100.0 | ||
| KOG2996|consensus | 865 | 100.0 | ||
| KOG3542|consensus | 1283 | 100.0 | ||
| KOG2378|consensus | 573 | 100.0 | ||
| PF00617 | 188 | RasGEF: RasGEF domain; InterPro: IPR001895 Ras pro | 100.0 | |
| KOG3518|consensus | 521 | 100.0 | ||
| KOG2070|consensus | 661 | 100.0 | ||
| KOG3523|consensus | 695 | 100.0 | ||
| KOG3541|consensus | 477 | 99.98 | ||
| KOG3520|consensus | 1167 | 99.97 | ||
| KOG4305|consensus | 1029 | 99.96 | ||
| KOG3521|consensus | 846 | 99.96 | ||
| smart00325 | 180 | RhoGEF Guanine nucleotide exchange factor for Rho/ | 99.96 | |
| cd00160 | 181 | RhoGEF Guanine nucleotide exchange factor for Rho/ | 99.96 | |
| KOG3417|consensus | 840 | 99.96 | ||
| PLN00154 | 136 | histone H2A; Provisional | 99.95 | |
| PTZ00252 | 134 | histone H2A; Provisional | 99.94 | |
| PLN00153 | 129 | histone H2A; Provisional | 99.94 | |
| PLN00157 | 132 | histone H2A; Provisional | 99.94 | |
| PTZ00017 | 134 | histone H2A; Provisional | 99.94 | |
| PLN00156 | 139 | histone H2AX; Provisional | 99.94 | |
| KOG1756|consensus | 131 | 99.94 | ||
| smart00414 | 106 | H2A Histone 2A. | 99.94 | |
| KOG4240|consensus | 1025 | 99.93 | ||
| PF00621 | 180 | RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho | 99.93 | |
| COG5262 | 132 | HTA1 Histone H2A [Chromatin structure and dynamics | 99.93 | |
| KOG3519|consensus | 756 | 99.92 | ||
| KOG1757|consensus | 131 | 99.92 | ||
| cd00074 | 115 | H2A Histone 2A; H2A is a subunit of the nucleosome | 99.92 | |
| KOG0689|consensus | 448 | 99.92 | ||
| KOG3522|consensus | 925 | 99.91 | ||
| cd01261 | 112 | PH_SOS Son of Sevenless (SOS) Pleckstrin homology | 99.86 | |
| KOG3531|consensus | 1036 | 99.86 | ||
| COG5422 | 1175 | ROM1 RhoGEF, Guanine nucleotide exchange factor fo | 99.83 | |
| KOG3524|consensus | 850 | 99.79 | ||
| PF00618 | 104 | RasGEF_N: RasGEF N-terminal motif; InterPro: IPR00 | 99.75 | |
| smart00229 | 127 | RasGEFN Guanine nucleotide exchange factor for Ras | 99.75 | |
| cd01224 | 109 | PH_Collybistin Collybistin pleckstrin homology (PH | 99.73 | |
| cd01218 | 104 | PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain | 99.68 | |
| cd01220 | 99 | PH_CDEP Chondrocyte-derived ezrin-like domain cont | 99.68 | |
| cd06224 | 122 | REM Guanine nucleotide exchange factor for Ras-lik | 99.67 | |
| cd01219 | 101 | PH_FGD FGD (faciogenital dysplasia protein) plecks | 99.63 | |
| PLN00155 | 58 | histone H2A; Provisional | 99.62 | |
| cd01222 | 97 | PH_clg Clg (common-site lymphoma/leukemia guanine | 99.57 | |
| cd01223 | 116 | PH_Vav Vav pleckstrin homology (PH) domain. Vav pl | 99.53 | |
| KOG3417|consensus | 840 | 99.49 | ||
| cd01228 | 96 | PH_BCR-related BCR (breakpoint cluster region)-rel | 99.48 | |
| cd01232 | 114 | PH_TRIO Trio pleckstrin homology (PH) domain. Trio | 99.46 | |
| cd01226 | 100 | PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin | 99.3 | |
| cd01227 | 133 | PH_Dbs Dbs (DBL's big sister) pleckstrin homology | 99.29 | |
| cd01225 | 111 | PH_Cool_Pix Cool (cloned out of library)/Pix (PAK- | 99.21 | |
| cd01221 | 125 | PH_ephexin Ephexin Pleckstrin homology (PH) domain | 99.18 | |
| PF00125 | 75 | Histone: Core histone H2A/H2B/H3/H4 histone h2a si | 98.93 | |
| PF00169 | 104 | PH: PH domain; InterPro: IPR001849 The pleckstrin | 98.72 | |
| smart00233 | 102 | PH Pleckstrin homology domain. Domain commonly fou | 98.47 | |
| PF15405 | 135 | PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A. | 98.44 | |
| PF15411 | 116 | PH_10: Pleckstrin homology domain | 98.42 | |
| KOG4269|consensus | 1112 | 98.22 | ||
| cd00821 | 96 | PH Pleckstrin homology (PH) domain. Pleckstrin hom | 98.21 | |
| cd01246 | 91 | PH_oxysterol_bp Oxysterol binding protein (OSBP) P | 98.12 | |
| cd01233 | 100 | Unc104 Unc-104 pleckstrin homology (PH) domain. Un | 98.11 | |
| cd01260 | 96 | PH_CNK Connector enhancer of KSR (Kinase suppresso | 97.98 | |
| cd01247 | 91 | PH_GPBP Goodpasture antigen binding protein (GPBP) | 97.92 | |
| cd00900 | 99 | PH-like Pleckstrin homology-like domain. Pleckstri | 97.86 | |
| cd01252 | 125 | PH_cytohesin Cytohesin Pleckstrin homology (PH) do | 97.84 | |
| cd01238 | 106 | PH_Tec Tec pleckstrin homology (PH) domain. Tec pl | 97.78 | |
| smart00427 | 89 | H2B Histone H2B. | 97.73 | |
| cd01250 | 94 | PH_centaurin Centaurin Pleckstrin homology (PH) do | 97.64 | |
| cd01229 | 129 | PH_etc2 Epithelial cell transforming 2 (ECT2) plec | 97.49 | |
| PTZ00463 | 117 | histone H2B; Provisional | 97.44 | |
| PLN00158 | 116 | histone H2B; Provisional | 97.44 | |
| cd01241 | 102 | PH_Akt Akt pleckstrin homology (PH) domain. Akt pl | 97.42 | |
| cd01235 | 101 | PH_SETbf Set binding factor Pleckstrin Homology (P | 97.38 | |
| cd01264 | 101 | PH_melted Melted pleckstrin homology (PH) domain. | 97.38 | |
| cd01266 | 108 | PH_Gab Gab (Grb2-associated binder) pleckstrin hom | 97.37 | |
| cd01251 | 103 | PH_centaurin_alpha Centaurin alpha Pleckstrin homo | 97.34 | |
| KOG0931|consensus | 627 | 97.26 | ||
| cd01257 | 101 | PH_IRS Insulin receptor substrate (IRS) pleckstrin | 97.21 | |
| COG5247 | 113 | BUR6 Class 2 transcription repressor NC2, alpha su | 97.15 | |
| KOG1729|consensus | 288 | 97.1 | ||
| cd01265 | 95 | PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain | 97.08 | |
| cd01244 | 98 | PH_RasGAP_CG9209 RAS_GTPase activating protein (GA | 96.98 | |
| cd01245 | 98 | PH_RasGAP_CG5898 RAS GTPase-activating protein (GA | 96.98 | |
| cd01253 | 104 | PH_beta_spectrin Beta-spectrin pleckstrin homology | 96.92 | |
| cd01230 | 117 | PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 | 96.82 | |
| cd01236 | 104 | PH_outspread Outspread Pleckstrin homology (PH) do | 96.8 | |
| KOG0930|consensus | 395 | 96.79 | ||
| cd01255 | 160 | PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM | 96.71 | |
| PF15413 | 112 | PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE | 96.23 | |
| KOG1659|consensus | 224 | 95.51 | ||
| PF00808 | 65 | CBFD_NFYB_HMF: Histone-like transcription factor ( | 95.46 | |
| KOG1744|consensus | 127 | 95.38 | ||
| cd01256 | 110 | PH_dynamin Dynamin pleckstrin homology (PH) domain | 95.36 | |
| KOG0690|consensus | 516 | 95.3 | ||
| PF15410 | 119 | PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN | 95.17 | |
| smart00803 | 65 | TAF TATA box binding protein associated factor. TA | 95.16 | |
| cd01263 | 122 | PH_anillin Anillin Pleckstrin homology (PH) domain | 95.01 | |
| cd01237 | 106 | Unc112 Unc-112 pleckstrin homology (PH) domain. Un | 94.35 | |
| PF15409 | 89 | PH_8: Pleckstrin homology domain | 94.2 | |
| cd01254 | 121 | PH_PLD Phospholipase D (PLD) pleckstrin homology ( | 93.83 | |
| COG2036 | 91 | HHT1 Histones H3 and H4 [Chromatin structure and d | 93.35 | |
| KOG3524|consensus | 850 | 93.13 | ||
| PLN00035 | 103 | histone H4; Provisional | 92.99 | |
| cd00076 | 85 | H4 Histone H4, one of the four histones, along wit | 92.94 | |
| PTZ00267 | 478 | NIMA-related protein kinase; Provisional | 92.78 | |
| KOG0521|consensus | 785 | 91.53 | ||
| cd01243 | 122 | PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin | 90.74 | |
| cd01242 | 112 | PH_ROK Rok (Rho- associated kinase) pleckstrin hom | 90.28 | |
| cd01249 | 104 | PH_oligophrenin Oligophrenin Pleckstrin homology ( | 89.03 | |
| smart00417 | 74 | H4 Histone H4. | 88.66 | |
| PTZ00015 | 102 | histone H4; Provisional | 86.98 | |
| cd07981 | 72 | TAF12 TATA Binding Protein (TBP) Associated Factor | 85.86 | |
| cd07979 | 117 | TAF9 TATA Binding Protein (TBP) Associated Factor | 85.45 | |
| KOG2059|consensus | 800 | 85.1 | ||
| KOG3522|consensus | 925 | 84.77 | ||
| PF12814 | 123 | Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin | 81.02 | |
| PF14593 | 104 | PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A. | 80.86 |
| >KOG3629|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-56 Score=490.17 Aligned_cols=389 Identities=24% Similarity=0.350 Sum_probs=313.0
Q ss_pred cCCCcccccccCHHHHHHHHccC-CCCChhHHHHHHHhccccCCHHHHHHHHHHhcCCCCCCcccccCccchhhhhhHHH
Q psy17173 600 QNTNMPLIKGATLHKLIERLTYH-IYADPAFIGTFLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIEESILRED 678 (1108)
Q Consensus 600 ~~~~~~~IkagTL~kLIe~Lt~~-~~~D~~f~~~FLlTyrsFttp~~LL~~Li~Ry~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1108)
+.++.+.||||||++||++|+.. ...|..|+.+||.|||+||++..||++|.+||...+..+ ++. +
T Consensus 60 e~~k~r~ikAGTlE~LVe~Ll~~~~~~D~~~~svFlaTyR~Ftst~~vL~llldRye~e~s~~---------~se--s-- 126 (728)
T KOG3629|consen 60 ESVKERLIKAGTLERLVECLLGSDDMMDSRHFSVFLATYRSFTSTAIVLDLLLDRYELENSVN---------GSE--S-- 126 (728)
T ss_pred cchhhhhhhcchHHHHHHHHhcCCCCcchhHHHHHHHHhhcccccHHHHHHHHHHHHhhhcCC---------chH--H--
Confidence 56788999999999999998754 578999999999999999999999999999998433211 111 1
Q ss_pred HHHHhhhccchhhhHHHHHHHHHHhhcccccccCHHHHHHHHHHHhhhccCch--hHHHHHHHHHHHHHhhhhhhhhhhc
Q psy17173 679 IIRYKKELCQPVQFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEISGKS--LRKWADIVLNLIQRKELDLEKEITF 756 (1108)
Q Consensus 679 ~~~~~~~~~~~vq~rVl~vl~~Wi~~~~~DF~~d~~ll~~L~~Fl~~~v~~~~--~~k~~~~l~~~l~r~~~~~~~~~~~ 756 (1108)
+ ..+|..|- +|+.|++.|+.||...+.+..++..+|+....++. .+..+.-.+...+|. ..
T Consensus 127 -~-------~~v~naI~-il~~WL~~~pEDF~~~~~~~~~ls~lL~~g~~~~~~e~ra~a~l~r~~~~ri-~~------- 189 (728)
T KOG3629|consen 127 -A-------LLVQNAIR-ILMCWLETYPEDFYDSDKDFAMLSSLLDFGGRNKLTELRAKARLQREVFKRI-GG------- 189 (728)
T ss_pred -H-------HHHHHHHH-HHHHHHHhChHhhcCccHHHHHHHHHHHhcCCCCcccchhHHHHHHHHHHhc-cc-------
Confidence 1 12444444 99999999999999877788777777774333321 111111112222221 11
Q ss_pred ccCCCCCCccccccCCCCccccccccCHHHHHHHHhHHHHHHhcCCChhhhhcccccCCCCC-CCCchHHHHHHHHhhHh
Q psy17173 757 AFNNSPPPIEVHVPINSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKA-EYSPNLIKIMKHTTNFT 835 (1108)
Q Consensus 757 ~~~~~pp~i~~~~~~p~~~~~~ll~~~p~eiA~QLTl~e~~lf~~I~~~Ell~~~w~k~~~~-~~~pni~~~i~~fn~ls 835 (1108)
.-..-|..+.... .++...+++..+....||+|||++|.++|+++-|+.|++++|+++|+. +.+|.+.+.|..||.++
T Consensus 190 ~~~~LP~~~~~~~-d~~~~~~dv~~f~~d~iAEQLT~~DA~LFk~l~phqClGcvWs~Rd~~ghl~ptvrATi~QFN~vs 268 (728)
T KOG3629|consen 190 MQAALPSLGQYVA-DMGNKMFDVGKFNCDQIAEQLTFWDAALFKELLPHQCLGCVWSKRDTAGHLVPTVRATIEQFNSVS 268 (728)
T ss_pred cccCCCccccccC-CCCccchhhhhhhHHHHHHHHHHHHHHHHHHhhhHhcccceeccCCCcccccchHHHHHHHHHHHH
Confidence 0011121222111 122367888999999999999999999999999999999999998864 67999999999999999
Q ss_pred hHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHhhcccccccchhhhhcCChHHHHHHHHHHhh--hh
Q psy17173 836 RWLEKIIVEA-ENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL--NG 912 (1108)
Q Consensus 836 ~wv~~~IL~~-~~~~~Ra~~i~kfI~vA~~~~~l~NFns~~aI~sgL~s~~I~RLk~Tw~~l~~~~~k~l~~l~~l--~~ 912 (1108)
.-|.++||.. -.+++||++|+|||+||.+|+-+.||.++.||+++|++.+|+|||.+|..++.+....|++|.++ .+
T Consensus 269 ~~Vvssilg~~lrp~qRAkiieKWI~iA~E~rllknfssl~avvsalqs~pihrlk~aw~~v~rdsls~f~els~ifse~ 348 (728)
T KOG3629|consen 269 QRVVSSILGPDLRPEQRAKIIEKWIDIARECRLLKNFSSLKAVVSALQSEPIHRLKSAWNSVPRDSISQFRELSSIFSED 348 (728)
T ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHhhhccceeeeccccccHHHHHHhhhccCchhHHHHHHHHHhhcccc
Confidence 9999999974 48899999999999999999999999999999999999999999999999999999999999988 35
Q ss_pred hhHHHHHHHHhcC-----------------------CCCcccchhhhHhHHHHHHhcCCCCCCCCCcccHHHHHHHHHHH
Q psy17173 913 DHFKKYQEKLRNI-----------------------NPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEII 969 (1108)
Q Consensus 913 ~n~~~yR~~l~~~-----------------------~~p~IPflGv~L~DL~~i~egnp~~~~~~~lINf~K~r~i~~ii 969 (1108)
+|+.+-|+.|-+. ....|||||.||+||++++++.+|+.++ |+|||+|+|+.++++
T Consensus 349 ~n~~~sReLL~qeGtsksspLe~s~k~a~~r~qr~~~qGtVPyLGtFLtDLvMlDtA~~d~~e~-glINFeKRRkEFeVl 427 (728)
T KOG3629|consen 349 GNQGNSRELLIQEGTSKSSPLEASPKRAHARWQRQDKQGTVPYLGTFLTDLVMLDTAMNDYPEE-GLINFEKRRKEFEVL 427 (728)
T ss_pred cCCcchhHHHHHhcccccCCCCcchhhhhhhhhhccCCcccchHHHHHHHHHHHhhcccCCccc-ccchHhhhhHHHHHH
Confidence 7787888776431 1346999999999999999999999974 899999999999999
Q ss_pred HHHHHHhc--CCCCCCCchHHHHHHHhcCCCCCCCchhhHHHHHHHhhhccCCCCCCCCC
Q psy17173 970 SEIQQYQN--EPYCLSVVPIYREFFENLSPFEGIDDNEMCNILFEQSLLIEPRHATHVPK 1027 (1108)
Q Consensus 970 ~~i~~~Q~--~~Y~~~~~~~i~~~l~~l~~~~~~~e~e~~d~ly~~Sl~iEPr~~~~~~~ 1027 (1108)
.+|+.+|+ ..|++.++..+++||.-+.+ ++| |..|.+|+++||.....+|.
T Consensus 428 a~lrllQsaar~Ynl~pd~~f~aWf~~l~~---ltE----~es~~~s~eiE~p~~~stp~ 480 (728)
T KOG3629|consen 428 AKLRLLQSAARHYNLHPDEEFGAWFQVLEQ---LTE----DESIIQSCEIEKPPMHSTPD 480 (728)
T ss_pred HHHHHHHHHhhccCCCchHHHHHHHHhccC---CcH----HHHHHHhhcccCCCCCCCCC
Confidence 99999999 68999999999999986543 455 45899999999988776653
|
|
| >smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases | Back alignment and domain information |
|---|
| >cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases | Back alignment and domain information |
|---|
| >KOG4424|consensus | Back alignment and domain information |
|---|
| >KOG2996|consensus | Back alignment and domain information |
|---|
| >KOG3542|consensus | Back alignment and domain information |
|---|
| >KOG2378|consensus | Back alignment and domain information |
|---|
| >PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP [] | Back alignment and domain information |
|---|
| >KOG3518|consensus | Back alignment and domain information |
|---|
| >KOG2070|consensus | Back alignment and domain information |
|---|
| >KOG3523|consensus | Back alignment and domain information |
|---|
| >KOG3541|consensus | Back alignment and domain information |
|---|
| >KOG3520|consensus | Back alignment and domain information |
|---|
| >KOG4305|consensus | Back alignment and domain information |
|---|
| >KOG3521|consensus | Back alignment and domain information |
|---|
| >smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases | Back alignment and domain information |
|---|
| >cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain | Back alignment and domain information |
|---|
| >KOG3417|consensus | Back alignment and domain information |
|---|
| >PLN00154 histone H2A; Provisional | Back alignment and domain information |
|---|
| >PTZ00252 histone H2A; Provisional | Back alignment and domain information |
|---|
| >PLN00153 histone H2A; Provisional | Back alignment and domain information |
|---|
| >PLN00157 histone H2A; Provisional | Back alignment and domain information |
|---|
| >PTZ00017 histone H2A; Provisional | Back alignment and domain information |
|---|
| >PLN00156 histone H2AX; Provisional | Back alignment and domain information |
|---|
| >KOG1756|consensus | Back alignment and domain information |
|---|
| >smart00414 H2A Histone 2A | Back alignment and domain information |
|---|
| >KOG4240|consensus | Back alignment and domain information |
|---|
| >PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes | Back alignment and domain information |
|---|
| >COG5262 HTA1 Histone H2A [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG3519|consensus | Back alignment and domain information |
|---|
| >KOG1757|consensus | Back alignment and domain information |
|---|
| >cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome | Back alignment and domain information |
|---|
| >KOG0689|consensus | Back alignment and domain information |
|---|
| >KOG3522|consensus | Back alignment and domain information |
|---|
| >cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >KOG3531|consensus | Back alignment and domain information |
|---|
| >COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3524|consensus | Back alignment and domain information |
|---|
| >PF00618 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR000651 The crystal structure of the guanine nucleotide exchange factor (GEF) region of human Sos1 complexes with Ras has been solved [] | Back alignment and domain information |
|---|
| >smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif | Back alignment and domain information |
|---|
| >cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain | Back alignment and domain information |
|---|
| >cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif) | Back alignment and domain information |
|---|
| >cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >PLN00155 histone H2A; Provisional | Back alignment and domain information |
|---|
| >cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01223 PH_Vav Vav pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >KOG3417|consensus | Back alignment and domain information |
|---|
| >cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01232 PH_TRIO Trio pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain | Back alignment and domain information |
|---|
| >cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ] | Back alignment and domain information |
|---|
| >PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ] | Back alignment and domain information |
|---|
| >smart00233 PH Pleckstrin homology domain | Back alignment and domain information |
|---|
| >PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A | Back alignment and domain information |
|---|
| >PF15411 PH_10: Pleckstrin homology domain | Back alignment and domain information |
|---|
| >KOG4269|consensus | Back alignment and domain information |
|---|
| >cd00821 PH Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd00900 PH-like Pleckstrin homology-like domain | Back alignment and domain information |
|---|
| >cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01238 PH_Tec Tec pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >smart00427 H2B Histone H2B | Back alignment and domain information |
|---|
| >cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01229 PH_etc2 Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >PTZ00463 histone H2B; Provisional | Back alignment and domain information |
|---|
| >PLN00158 histone H2B; Provisional | Back alignment and domain information |
|---|
| >cd01241 PH_Akt Akt pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain | Back alignment and domain information |
|---|
| >cd01264 PH_melted Melted pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >KOG0931|consensus | Back alignment and domain information |
|---|
| >cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription] | Back alignment and domain information |
|---|
| >KOG1729|consensus | Back alignment and domain information |
|---|
| >cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain | Back alignment and domain information |
|---|
| >cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >KOG0930|consensus | Back alignment and domain information |
|---|
| >cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C | Back alignment and domain information |
|---|
| >KOG1659|consensus | Back alignment and domain information |
|---|
| >PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin | Back alignment and domain information |
|---|
| >KOG1744|consensus | Back alignment and domain information |
|---|
| >cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >KOG0690|consensus | Back alignment and domain information |
|---|
| >PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A | Back alignment and domain information |
|---|
| >smart00803 TAF TATA box binding protein associated factor | Back alignment and domain information |
|---|
| >cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >PF15409 PH_8: Pleckstrin homology domain | Back alignment and domain information |
|---|
| >cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG3524|consensus | Back alignment and domain information |
|---|
| >PLN00035 histone H4; Provisional | Back alignment and domain information |
|---|
| >cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution | Back alignment and domain information |
|---|
| >PTZ00267 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
| >KOG0521|consensus | Back alignment and domain information |
|---|
| >cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >smart00417 H4 Histone H4 | Back alignment and domain information |
|---|
| >PTZ00015 histone H4; Provisional | Back alignment and domain information |
|---|
| >cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
| >cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
| >KOG2059|consensus | Back alignment and domain information |
|---|
| >KOG3522|consensus | Back alignment and domain information |
|---|
| >PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis | Back alignment and domain information |
|---|
| >PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1108 | ||||
| 3ksy_A | 1049 | Crystal Structure Of The Histone Domain, Dh-Ph Unit | 0.0 | ||
| 1xd4_A | 852 | Crystal Structure Of The Dh-Ph-Cat Module Of Son Of | 0.0 | ||
| 1xdv_A | 847 | Experimentally Phased Structure Of Human The Son Of | 0.0 | ||
| 2ii0_A | 490 | Crystal Structure Of Catalytic Domain Of Son Of Sev | 1e-145 | ||
| 1nvu_S | 481 | Structural Evidence For Feedback Activation By Rasg | 1e-145 | ||
| 1xd2_C | 484 | Crystal Structure Of A Ternary Ras:sos:ras*gdp Comp | 1e-145 | ||
| 1bkd_S | 477 | Complex Of Human H-Ras With Human Sos-1 Length = 47 | 1e-144 | ||
| 1dbh_A | 354 | Dbl And Pleckstrin Homology Domains From Hsos1 Leng | 3e-49 | ||
| 2ije_S | 240 | Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Le | 1e-35 | ||
| 1q9c_A | 191 | Crystal Structure Of The Histone Domain Of Son Of S | 1e-21 | ||
| 1awe_A | 130 | Human Sos1 Pleckstrin Homology (Ph) Domain, Nmr, 20 | 5e-21 | ||
| 3qxl_A | 271 | Crystal Structure Of The Cdc25 Domain From Ral-Spec | 1e-20 | ||
| 1pms_A | 136 | Pleckstrin Homology Domain Of Son Of Sevenless 1 (S | 5e-20 | ||
| 2byv_E | 999 | Structure Of The Camp Responsive Exchange Factor Ep | 8e-14 | ||
| 4f7z_A | 999 | Conformational Dynamics Of Exchange Protein Directl | 9e-14 | ||
| 3cf6_E | 694 | Structure Of Epac2 In Complex With Cyclic-Amp And R | 1e-13 |
| >pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And Catalytic Unit Of The Ras Activator Son Of Sevenless (Sos) Length = 1049 | Back alignment and structure |
|
| >pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of Sevenless (Sos) Length = 852 | Back alignment and structure |
| >pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of Sevenless Protein At 4.1 Ang. Length = 847 | Back alignment and structure |
| >pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless (Rem-Cdc25) In The Absence Of Ras Length = 490 | Back alignment and structure |
| >pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-Specific Nucleotide Exchange Factor Sos Length = 481 | Back alignment and structure |
| >pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex Length = 484 | Back alignment and structure |
| >pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1 Length = 477 | Back alignment and structure |
| >pdb|1DBH|A Chain A, Dbl And Pleckstrin Homology Domains From Hsos1 Length = 354 | Back alignment and structure |
| >pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Length = 240 | Back alignment and structure |
| >pdb|1Q9C|A Chain A, Crystal Structure Of The Histone Domain Of Son Of Sevenless Length = 191 | Back alignment and structure |
| >pdb|1AWE|A Chain A, Human Sos1 Pleckstrin Homology (Ph) Domain, Nmr, 20 Structures Length = 130 | Back alignment and structure |
| >pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific Guanine- Nucleotide Exchange Factor Ralgps1a Length = 271 | Back alignment and structure |
| >pdb|1PMS|A Chain A, Pleckstrin Homology Domain Of Son Of Sevenless 1 (Sos1) With Glycine-Serine Added To The N-Terminus, Nmr, 20 Structures Length = 136 | Back alignment and structure |
| >pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In Its Auto-Inhibited State Length = 999 | Back alignment and structure |
| >pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly Activated By Camp Length = 999 | Back alignment and structure |
| >pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap Length = 694 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Length = 1049 | Back alignment and structure |
|---|
Score = 817 bits (2111), Expect = 0.0
Identities = 470/1050 (44%), Positives = 677/1050 (64%), Gaps = 31/1050 (2%)
Query: 18 DFHEAYNENRWKGTLVSSLHSILKQVHNSLDINTDALYYTEKLILKLLNLLCSKPLPLTT 77
+F N +W+G LV +L + QVH +L+ N DAL Y E+LIL+LLN+LC P +
Sbjct: 9 EFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQ-AQPRSA 67
Query: 78 SDMEGKIKKYFPNPISEWTFNEAKQALEKGKKKSSLVISIDRVQNILQKEFYFRKVETNM 137
SD+E +++K FP+PI +W +A+ A+EK K+++ L + ++++ +L KE K++ +
Sbjct: 68 SDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQV 126
Query: 138 VLYYAAVLDYVAADLLKLVGNYVKNIRKVDISIQDIDVAMYADKALLELFFQEDDD--PV 195
+Y AVL+Y++AD+LKLVGNYV+NIR +I+ QDI VAM ADK L+++F Q+ +D +
Sbjct: 127 SVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMFHQDVEDINIL 186
Query: 196 YLEPQVQSNNVVLHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPLKEIKEVHSLF 255
L + S + Y +V F+AE + +IREL LI+K+F E + L +V ++F
Sbjct: 187 SLTDEEPSTSGEQTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIF 246
Query: 256 EIIEEIYNLTVCLLGAVEDISEMSSDD---HCIGSCFEEFAEDAEFDVYEKLLHNIVNQK 312
I +I+ L+V LLG +ED EM+ + +GSCFE+ AE+ FD YE +I+
Sbjct: 247 SRIVDIHELSVKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPG 306
Query: 313 SIEVLSMHVTQPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSLTDS 372
+ +++P LQ G GFKE V+Y LP LL++P+YHC YFE +K ++
Sbjct: 307 FHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSED 366
Query: 373 SKDKECLEQAQGLLAPLQISLSKISLEKNGKNACVRNYNRVKHLQ------SLEKIHELK 426
+DKECL+QA L +Q + KI + K + R Q +++K++E++
Sbjct: 367 QEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQ 426
Query: 427 KNVDGVDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCKSNKKISVTVP 486
KN+DG + +D+ EF E TL + K ER ++ FDG++I CKSN
Sbjct: 427 KNIDGWEGKDIGQCCNEFIMEGTLTRVGAK----HERHIFLFDGLMICCKSNHGQPRLPG 482
Query: 487 INVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWF 546
+S E++ KE +F+RKV+IND ++T++ K+AFEI +D+ S+I KS E+K +W
Sbjct: 483 ----ASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWM 538
Query: 547 SDLIMVNTKSMLERTLDSIILDEEKKHPLRMPSPEYYSFAEPDSCENIILEEKQNTNM-- 604
+ LI + +S LER LD +L EEK+ +R+PS + Y FAEPDS ENII EE
Sbjct: 539 AALISLQYRSTLERMLDVTMLQEEKEEQMRLPSADVYRFAEPDSEENIIFEENMQPKAGI 598
Query: 605 PLIKGATLHKLIERLTYHIYADPAFIGTFLTTYRSFTTPTELLDLLIDRFNV-PDPNKVF 663
P+IK T+ KLIERLTYH+YADP F+ TFLTTYRSF P ELL L+I+RF +
Sbjct: 599 PIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPTEA 658
Query: 664 ENNNADIEESILREDIIRYKKELCQPVQFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFL 723
+ + + L ++ R++KE QPVQ RVLNV R WV+HHFYDF+RD LL++++ F+
Sbjct: 659 DRIAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFI 718
Query: 724 LNEISGKSLRKWADIVLNLIQRKEL--DLEKEITFAFNNSPPPIEVHVPINS-IDEFNIL 780
+ GK+++KW + + +IQRK++ D F +SPP +E H+ I+ F++L
Sbjct: 719 -GTVRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLL 777
Query: 781 IAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEK 840
HP+EIARQLTLLE D +R+V+PSELVGSVWTK++K SPNL+K+++HTTN T W EK
Sbjct: 778 TLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEK 837
Query: 841 IIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRL 900
IVE EN +ER+A+++RIIE++ V Q+LNNFNGVL V SAM S+ VYRL TF+ +P+R
Sbjct: 838 CIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQ 897
Query: 901 QKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDS--KLIN 958
+K+LE+A EL+ DH+KKY KLR+INPPC+PFFG+YLTNIL EEGNP+ L +LIN
Sbjct: 898 KKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELIN 957
Query: 959 FTKRRKVAEIISEIQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCNILFEQSLLIE 1018
F+KRRKVAEI EIQQYQN+PYCL V + FFENL+P + E + LF +SL IE
Sbjct: 958 FSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIE 1017
Query: 1019 PRHATHVPKFPRKWPNISLKSPLVKIKKTR 1048
PR+ +P+FP+K+ LKSP V+ R
Sbjct: 1018 PRNPKPLPRFPKKYS-YPLKSPGVRPSNPR 1046
|
| >2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S Length = 490 | Back alignment and structure |
|---|
| >2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} Length = 240 | Back alignment and structure |
|---|
| >3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens} Length = 271 | Back alignment and structure |
|---|
| >2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999 | Back alignment and structure |
|---|
| >2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999 | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Length = 694 | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Length = 694 | Back alignment and structure |
|---|
| >1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Length = 354 | Back alignment and structure |
|---|
| >2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Length = 402 | Back alignment and structure |
|---|
| >2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466 | Back alignment and structure |
|---|
| >3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587 | Back alignment and structure |
|---|
| >2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406 | Back alignment and structure |
|---|
| >3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434 | Back alignment and structure |
|---|
| >3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens} Length = 333 | Back alignment and structure |
|---|
| >1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A Length = 353 | Back alignment and structure |
|---|
| >2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A Length = 311 | Back alignment and structure |
|---|
| >3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens} Length = 331 | Back alignment and structure |
|---|
| >1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 132 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 Length = 377 | Back alignment and structure |
|---|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
| >2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A Length = 346 | Back alignment and structure |
|---|
| >3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
| >1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A* Length = 368 | Back alignment and structure |
|---|
| >1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A Length = 385 | Back alignment and structure |
|---|
| >3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536 | Back alignment and structure |
|---|
| >3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Length = 377 | Back alignment and structure |
|---|
| >1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ... Length = 129 | Back alignment and structure |
|---|
| >2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1 Length = 192 | Back alignment and structure |
|---|
| >1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1 Length = 209 | Back alignment and structure |
|---|
| >3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283 | Back alignment and structure |
|---|
| >1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B* Length = 113 | Back alignment and structure |
|---|
| >1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1 Length = 119 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1108 | |||
| 3ksy_A | 1049 | SOS-1, SON of sevenless homolog 1; RAS, RAS activa | 100.0 | |
| 2ii0_A | 490 | SOS-1, SON of sevenless homolog 1; signaling prote | 100.0 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 100.0 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 100.0 | |
| 2ije_S | 240 | Guanine nucleotide-releasing protein; rasgrf1, CDC | 100.0 | |
| 1dbh_A | 354 | Protein (human SOS 1); guanine nucleotide exchange | 100.0 | |
| 3qxl_A | 271 | RAS-specific guanine nucleotide-releasing factor; | 100.0 | |
| 2dfk_A | 402 | Collybistin II; DH domain, PH domain, cell cycle; | 100.0 | |
| 2pz1_A | 466 | RHO guanine nucleotide exchange factor 4; helical | 100.0 | |
| 2z0q_A | 346 | XPLN, RHO guanine nucleotide exchange factor 3; DH | 100.0 | |
| 2vrw_B | 406 | P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP | 100.0 | |
| 1xcg_A | 368 | PDZ-rhogef, RHO guanine nucleotide exchange factor | 100.0 | |
| 3t06_A | 418 | PDZ-rhogef, RHO guanine nucleotide exchange factor | 100.0 | |
| 3mpx_A | 434 | FYVE, rhogef and PH domain-containing protein 5; s | 100.0 | |
| 1foe_A | 377 | T-lymphoma invasion and metastasis inducing protei | 100.0 | |
| 3p6a_A | 377 | RHO guanine nucleotide exchange factor 1; regulati | 100.0 | |
| 1txd_A | 385 | RHO guanine nucleotide exchange factor 12; helical | 100.0 | |
| 3odw_A | 536 | RHO guanine nucleotide exchange factor 1; regulati | 100.0 | |
| 3ky9_A | 587 | Proto-oncogene VAV; calponin homology domain, DBL | 100.0 | |
| 1kz7_A | 353 | Guanine nucleotide exchange factor DBS; guanine nu | 100.0 | |
| 2rgn_B | 354 | RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p | 100.0 | |
| 1nty_A | 311 | Triple functional domain protein; DBL, pleckstrin, | 100.0 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 100.0 | |
| 1by1_A | 209 | Protein (PIX); RHO-GTPase exchange factor, transpo | 100.0 | |
| 3jv3_A | 283 | Intersectin-1; SH3 domain, DH domain, guanine nucl | 99.98 | |
| 2jss_A | 192 | Chimera of histone H2B.1 and histone H2A.Z; histon | 99.97 | |
| 1id3_C | 131 | Histone H2A.1; nucleosome core particle, chromatin | 99.89 | |
| 1f66_C | 128 | Histone H2A.Z; nucleosome, chromatin, histone vari | 99.89 | |
| 2f8n_G | 120 | Core histone macro-H2A.1; nucleosome, NCP, macroh2 | 99.89 | |
| 2nqb_C | 123 | Histone H2A; nucleosome, NCP, chromatin, structura | 99.89 | |
| 2f8n_K | 149 | Histone H2A type 1; nucleosome, NCP, macroh2A, his | 99.88 | |
| 1tzy_A | 129 | Histone H2A-IV; histone-fold, tetramer-dimer-dimer | 99.88 | |
| 1v61_A | 132 | RAC/CDC42 guanine nucleotide exchange factor (GEF) | 99.71 | |
| 2lg1_A | 185 | A-kinase anchor protein 13; metal binding protein; | 99.67 | |
| 3t6a_A | 333 | Breast cancer anti-estrogen resistance protein 3; | 99.59 | |
| 3t6g_A | 331 | SH2 domain-containing protein 3C; CDC25-homology d | 99.58 | |
| 1jfi_A | 98 | Transcription regulator NC2 alpha chain; histone, | 99.52 | |
| 1zc3_B | 113 | Exocyst complex protein EXO84; exocytosis, small G | 99.52 | |
| 3qwm_A | 140 | Iqsec1, IQ motif and SEC7 domain-containing protei | 99.29 | |
| 1fho_A | 119 | UNC-89; pleckstrin homology domain, electrostatics | 99.1 | |
| 1n1j_B | 97 | NF-YC; histone-like PAIR, DNA binding protein; 1.6 | 99.08 | |
| 4g92_C | 119 | HAPE; transcription factor, nucleosome, minor groo | 99.04 | |
| 1f1e_A | 154 | Histone fold protein; archaeal histone protein, DN | 98.68 | |
| 2byk_A | 140 | Chrac-16; nucleosome sliding, histone fold, DNA-bi | 98.58 | |
| 2yfw_B | 103 | Histone H4, H4; cell cycle, kinetochore, centromer | 98.49 | |
| 1tzy_D | 103 | Histone H4-VI; histone-fold, tetramer-dimer-dimer, | 98.47 | |
| 2i5f_A | 109 | Pleckstrin; PH domain, protein-inositol phosphate | 98.43 | |
| 1u5d_A | 108 | SKAP55, SRC kinase-associated phosphoprotein of 55 | 98.32 | |
| 1pls_A | 113 | Pleckstrin homology domain; phosphorylation; NMR { | 98.3 | |
| 1v89_A | 118 | Hypothetical protein KIAA0053; pleckstrin homology | 98.24 | |
| 1x05_A | 129 | Pleckstrin; PH domain, structural genomics, NPPSFA | 98.22 | |
| 2d9y_A | 117 | Pleckstrin homology domain-containing protein fami | 98.21 | |
| 2dn6_A | 115 | KIAA0640 protein; PH domain, structural genomics, | 98.2 | |
| 1wgq_A | 109 | FYVE, rhogef and PH domain containing 6; ethanol d | 98.19 | |
| 2dkp_A | 128 | Pleckstrin homology domain-containing family A mem | 98.17 | |
| 4a6h_A | 120 | Phosphatidylinositol 4,5-bisphosphate-binding Pro | 98.14 | |
| 1upq_A | 123 | PEPP1; PH domain, phosphoinositide binding, signal | 98.13 | |
| 1fao_A | 126 | Dual adaptor of phosphotyrosine and 3- phosphoinos | 98.13 | |
| 1fgy_A | 127 | GRP1; PH domain, signaling protein; HET: 4IP; 1.50 | 98.12 | |
| 2yry_A | 122 | Pleckstrin homology domain-containing family A mem | 98.12 | |
| 1x1g_A | 129 | Pleckstrin 2; PH domain, structural genomics, rike | 98.09 | |
| 3rcp_A | 103 | Pleckstrin homology domain-containing family A ME; | 98.08 | |
| 1btk_A | 169 | Bruton'S tyrosine kinase; transferase, PH domain, | 98.05 | |
| 1u5f_A | 148 | SRC-associated adaptor protein; PH domain of SKAP- | 98.04 | |
| 2cod_A | 115 | Centaurin-delta 1; ARF GAP and RHO GAP with ankyri | 98.04 | |
| 2lul_A | 164 | Tyrosine-protein kinase TEC; structural genomics, | 98.01 | |
| 2rsg_A | 94 | Collagen type IV alpha-3-binding protein; pleckstr | 97.99 | |
| 2d9x_A | 120 | Oxysterol binding protein-related protein 11; PH d | 97.95 | |
| 1wg7_A | 150 | Dedicator of cytokinesis protein 9; pleckstrin hom | 97.94 | |
| 1eaz_A | 125 | Tandem PH domain containing protein-1; lipid-bindi | 97.93 | |
| 2d9v_A | 130 | Pleckstrin homology domain-containing protein fami | 97.93 | |
| 1v5u_A | 117 | SBF1, SET binding factor 1; MTMR5, the pleckstrin | 97.92 | |
| 1wi1_A | 126 | Calcium-dependent activator protein for secretion, | 97.91 | |
| 3aj4_A | 112 | Pleckstrin homology domain-containing family B ME; | 97.9 | |
| 2cof_A | 107 | Protein KIAA1914; PH domain, structural genomics, | 97.88 | |
| 1v88_A | 130 | Oxysterol binding protein-related protein 8; vesic | 97.87 | |
| 3cxb_B | 112 | Pleckstrin homology domain-containing family M mem | 97.86 | |
| 1x1f_A | 149 | Signal-transducing adaptor protein 1; docking prot | 97.86 | |
| 1dyn_A | 125 | Dynamin; signal transduction protein; 2.20A {Homo | 97.85 | |
| 2p0d_A | 129 | RHO GTPase-activating protein 9; protein-phosphoin | 97.85 | |
| 2w2x_D | 124 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 97.83 | |
| 1unq_A | 125 | RAC-alpha serine/threonine kinase; transferase, pl | 97.82 | |
| 2rlo_A | 128 | Centaurin-gamma 1; split PH domain, alternative sp | 97.8 | |
| 4gou_A | 518 | EHRGS-rhogef; RGS domain, DH domain, PH domain, RH | 97.8 | |
| 2da0_A | 114 | 130-kDa phosphatidylinositol 4,5-biphosphate- depe | 97.73 | |
| 1btn_A | 106 | Beta-spectrin; signal transduction protein; HET: I | 97.71 | |
| 2dhk_A | 119 | TBC1 domain family member 2; PH domain, paris-1, s | 97.7 | |
| 1wjm_A | 123 | Beta-spectrin III; PH domain, signal transduction, | 97.66 | |
| 1u5e_A | 211 | SRC-associated adaptor protein; novel dimerization | 97.62 | |
| 2nqb_D | 123 | Histone H2B; nucleosome, NCP, chromatin, structura | 97.61 | |
| 1tzy_B | 126 | Histone H2B; histone-fold, tetramer-dimer-dimer, D | 97.6 | |
| 2dtc_A | 126 | RAL guanine nucleotide exchange factor ralgps1A; P | 97.56 | |
| 2r09_A | 347 | Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph | 97.51 | |
| 1ku5_A | 70 | HPHA, archaeal histon; histone fold, DNA binding p | 97.51 | |
| 2fjl_A | 150 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 97.5 | |
| 3a8p_A | 263 | T-lymphoma invasion and metastasis-inducing protei | 97.49 | |
| 2q13_A | 385 | DCC-interacting protein 13 alpha; APPL1, BAR domai | 97.45 | |
| 2j59_M | 168 | RHO-GTPase activating protein 10; ARF, ARF1, ARFBD | 97.45 | |
| 4h8s_A | 407 | DCC-interacting protein 13-beta; BAR domain, pleck | 97.42 | |
| 2coc_A | 112 | FYVE, rhogef and PH domain containing protein 3; s | 97.41 | |
| 3pp2_A | 124 | RHO GTPase-activating protein 27; PH domain, GTPas | 97.39 | |
| 1v5p_A | 126 | Pleckstrin homology domain-containing, family A; T | 97.35 | |
| 2y7b_A | 134 | Actin-binding protein anillin; cell cycle; 1.90A { | 97.31 | |
| 3tfm_A | 228 | Myosin X; split PH domain, motor protein; 2.53A {R | 97.29 | |
| 1dro_A | 122 | Beta-spectrin; cytoskeleton; NMR {Drosophila melan | 97.23 | |
| 3lju_X | 386 | ARF-GAP with dual PH domain-containing protein 1; | 97.14 | |
| 1b67_A | 68 | Protein (histone HMFA); DNA binding protein; 1.48A | 97.09 | |
| 1qqg_A | 264 | IRS-1, insulin receptor substrate 1; beta-sandwhic | 96.97 | |
| 3tca_A | 291 | Amyloid beta A4 precursor protein-binding family 1 | 96.87 | |
| 3hk0_A | 256 | Growth factor receptor-bound protein 10; GRB10, RA | 96.74 | |
| 4gmv_A | 281 | RAS-associated and pleckstrin homology domains-CO | 96.4 | |
| 3lju_X | 386 | ARF-GAP with dual PH domain-containing protein 1; | 96.31 | |
| 2rov_A | 117 | RHO-associated protein kinase 2; ATP-binding, coil | 96.06 | |
| 2d9w_A | 127 | Docking protein 2; PH domain, structural genomics, | 95.83 | |
| 2ys3_A | 137 | UNC-112-related protein 2; PH domain, kindlin-3, s | 95.32 | |
| 1f1e_A | 154 | Histone fold protein; archaeal histone protein, DN | 95.3 | |
| 3a8n_A | 279 | TIAM-1, T-lymphoma invasion and metastasis-inducin | 94.86 | |
| 4ejn_A | 446 | RAC-alpha serine/threonine-protein kinase; AKT1, a | 94.62 | |
| 2hue_C | 84 | Histone H4; mini beta sheet, elongated beta sandwh | 94.6 | |
| 4f7h_A | 173 | Fermitin family homolog 2; beta-barrel, membrane b | 94.15 | |
| 1taf_B | 70 | TFIID TBP associated factor 62; transcription init | 94.08 | |
| 3b0c_W | 76 | CENP-W, centromere protein W; histone fold, DNA bi | 93.99 | |
| 1id3_B | 102 | Histone H4; nucleosome core particle, chromatin, p | 93.94 | |
| 1n1j_A | 93 | NF-YB; histone-like PAIR, DNA binding protein; 1.6 | 93.82 | |
| 4bbk_A | 165 | Kindlin-1, fermitin family homolog 1; PH domain, c | 93.13 | |
| 1w1g_A | 151 | HPDK1, 3-phosphoinositide dependent protein kinase | 92.5 | |
| 1taf_A | 68 | TFIID TBP associated factor 42; transcription init | 92.28 | |
| 1mai_A | 131 | Phospholipase C delta-1; pleckstrin, inositol tris | 92.01 | |
| 2byk_B | 128 | Chrac-14; nucleosome sliding, histone fold, DNA-bi | 90.39 | |
| 3v9r_A | 90 | MHF1, uncharacterized protein YOL086W-A; histone f | 90.1 | |
| 3b0c_T | 111 | CENP-T, centromere protein T; histone fold, DNA bi | 89.5 | |
| 4dra_A | 113 | Centromere protein S; DNA binding complex, DNA dam | 87.96 | |
| 3b0b_B | 107 | CENP-S, centromere protein S; histone fold, DNA bi | 87.48 | |
| 1v5m_A | 136 | SH2 and PH domain-containing adapter protein APS; | 84.46 | |
| 1tzy_B | 126 | Histone H2B; histone-fold, tetramer-dimer-dimer, D | 82.57 | |
| 3vh5_A | 140 | CENP-S; histone fold, chromosome segregation, DNA | 81.51 | |
| 1jfi_B | 179 | DR1 protein, transcription regulator NC2 beta chai | 80.32 |
| >3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-194 Score=1863.05 Aligned_cols=1025 Identities=46% Similarity=0.802 Sum_probs=915.1
Q ss_pred ccccCCcccccccccccchhhhHHHHHHHHHHhcCCCCcCchHHHHHHHHHHHHHHHhccCCCCCChhhHHHHHHhhCCC
Q psy17173 11 ADFNDNCDFHEAYNENRWKGTLVSSLHSILKQVHNSLDINTDALYYTEKLILKLLNLLCSKPLPLTTSDMEGKIKKYFPN 90 (1108)
Q Consensus 11 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~f~~ 90 (1108)
++++.+|||+++||++||+|+|+++||||++||||+|+|++|||+|||+||++||++||+ ++|+||+|||++|+++||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 80 (1049)
T 3ksy_A 2 QAQQLPYEFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQ-AQPRSASDVEERVQKSFPH 80 (1049)
T ss_dssp ----CCCCSSCSSCCTTSSSSSHHHHHHHHHHHCTTSBCCHHHHHHHHHHHHHHHHHHHH-TCCCSHHHHHHHHHHHSCT
T ss_pred CCcccCCCccchhhHHHHHHHHHHHHHHHHHHhCCCCCccHhHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHhCCC
Confidence 456788999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCchhhHHHHHHHHHcCCCCCCcccchhHHHhhHhhccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Q psy17173 91 PISEWTFNEAKQALEKGKKKSSLVISIDRVQNILQKEFYFRKVETNMVLYYAAVLDYVAADLLKLVGNYVKNIRKVDISI 170 (1108)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~r~~l~fpv~~~~~~l~~~~~~~r~~~~~~vy~~avleyl~~~vlelagn~~~~~~~~~itp 170 (1108)
|||+||+++|++++.++|+||||+||||||||+| +|+|++|||++||||+|||||||||||||||||+++++++.+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p 159 (1049)
T 3ksy_A 81 PIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITK 159 (1049)
T ss_dssp THHHHHHHHHHHHHTTCCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCH
T ss_pred chHHHHHHHHHHhhhcccccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecC
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred cchhhHHhcChhhhhhhccCCCCCC-----cCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy17173 171 QDIDVAMYADKALLELFFQEDDDPV-----YLEPQVQSNNVVLHYEQVVNDFVAEEKLFIRELKLILKIFYEELNKITPL 245 (1108)
Q Consensus 171 ~~i~~a~~~D~eL~~l~~~d~~~~~-----~~~~~~~~~~~~~sy~evi~ELi~TEr~Yv~~L~~ii~~f~~pl~~~~~l 245 (1108)
+|+++|+++|++|+++|++++++.. .++|. ..++ ++|++||+||++||++||++|+.++++|+.||.....+
T Consensus 160 ~~~~~ai~~d~eL~~l~~~dee~~~~lp~~~~~~~-~~~~--~~~revI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~~ 236 (1049)
T 3ksy_A 160 QDIKVAMCADKVLMDMFHQDVEDINILSLTDEEPS-TSGE--QTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKL 236 (1049)
T ss_dssp HHHHHHHHHCSSHHHHCC------------------CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHCTTT
T ss_pred ccccccccCCHHHHHHHhhccccccCCCCccccCc-ccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccC
Confidence 9999999999999999988865431 12222 2244 89999999999999999999999999999999987666
Q ss_pred CCHHhHhhhccCHHHHHHHHHHHHHHHHHhhccCCC---CCcchhHHHhhhhcccchhHHHHHhhhccHHHHHHHHHHhc
Q psy17173 246 KEIKEVHSLFEIIEEIYNLTVCLLGAVEDISEMSSD---DHCIGSCFEEFAEDAEFDVYEKLLHNIVNQKSIEVLSMHVT 322 (1108)
Q Consensus 246 ~~~~~i~~IFsNIeeI~~~~~~fL~~Le~~~~~~~~---~~~IG~~F~~~a~~~~f~~Y~~Yc~N~~~~~a~~~l~~l~~ 322 (1108)
.++++++.|||||++|+++|+.||.+|+++++.++. .+.||+||+++++...|++|..||+||.++.+...+.++.+
T Consensus 237 l~~~~~~~IF~Ni~~I~~~h~~fL~~Le~~~~~~~~~~~~~~IgdiFl~~~~~~~F~~Y~~Yc~ny~~~~a~~~l~~l~~ 316 (1049)
T 3ksy_A 237 FSANDVENIFSRIVDIHELSVKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLS 316 (1049)
T ss_dssp SCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHCCSSSSSCCCHHHHHHHHHTTTTSHHHHHHHHHHCTTHHHHHHTTSS
T ss_pred CCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHHHhhhhHHHHHHHhhccHHHHHHHHHHhc
Confidence 677999999999999999999999999999997754 47899999999877789999999999766799999999999
Q ss_pred ChhhHHHHHHhcccccccccccccccccccccchHhHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhhh---hhh
Q psy17173 323 QPSILNTLQFAGYGFKECVKYYLPNLLMSPLYHCNLYFEYIKIFHSLTDSSKDKECLEQAQGLLAPLQISLSKI---SLE 399 (1108)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~L~slLi~PvQRI~rY~LLLkeLlK~Tp~~hD~~~L~~A~~~~~~v~~~ine~---~~~ 399 (1108)
++++..+++..|++++.+.+++|++||++|||||+||+|||++|+|+||+..||++|++|++.|++++..||+. ...
T Consensus 317 ~~~f~~fl~~~~~~~~~~~~l~L~s~LikPvQRI~rY~LLL~~LlK~Tp~~~D~~~L~~Al~~i~~v~~~VNe~~~~~~~ 396 (1049)
T 3ksy_A 317 KPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDKECLKQAITALLNVQSGMEKICSKSLA 396 (1049)
T ss_dssp STTHHHHHHHHCTTHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTHHHHHHHHHHTTSTTH
T ss_pred ChHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999988999999999999999999999999999999999999984449999999999999999999983 233
Q ss_pred hcCccccc-c--hhhhhhhHHHHHHHHHHHhhccCCCcccccccccceeeeeeeEEEeCCCCcceeEEEEeecCeEEEEe
Q psy17173 400 KNGKNACV-R--NYNRVKHLQSLEKIHELKKNVDGVDVRDLRPYLEEFYREDTLMKYDGKSNRLTERKVYFFDGVLILCK 476 (1108)
Q Consensus 400 k~~~~~~~-~--~~e~~rk~~~~~kl~eiq~~I~g~~~~~l~~~~r~li~eG~L~k~~~~~~~~~er~~FLF~d~Ll~~k 476 (1108)
|++.++.. + .++.+|+.++++++.++|..|+||+|.++..++|+||++|.+.+.+++ ++||+|||||+||+||
T Consensus 397 k~r~~e~~~~~~~n~~kr~~e~~~~l~~lq~~i~~~~~~~l~~~~r~Li~eG~l~~~~~k----~~r~~FLF~D~Ll~~K 472 (1049)
T 3ksy_A 397 KRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTRVGAK----HERHIFLFDGLMICCK 472 (1049)
T ss_dssp HHHHHHHC-------------CCSHHHHHHHTSSSCCSSCGGGTCSCCCCEEEEEETTCS----SCEEEEEETTEEEEEE
T ss_pred hhccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCccccccccceEEEeceEEEEccC----ceEEEEeeCCeEEEEE
Confidence 33221100 1 234567888889999999999999999999999999999999987644 4999999999999999
Q ss_pred cCCCCccccccccccCcceeEEEEEeeccCeEEeecCCCccccccEEeecCCCCeEEEEeCCHHHHHHHHHHHHHHHhhH
Q psy17173 477 SNKKISVTVPINVVSSQYEFKCKEMYFLRKVEINDYENTDDIKNAFEIAPRDQPSIIIVTKSPEDKKSWFSDLIMVNTKS 556 (1108)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~y~~k~~i~l~~~~I~d~~d~~~~~~aF~I~~~~~~~~~l~a~s~eeK~~Wm~~L~~l~~~s 556 (1108)
+++.++. ..+.++..|.+++.+++.++.|.+.+|+++.+|+|+|.+.++.+|+|+|+|+++|+.||++|.++++++
T Consensus 473 ~~~~~~~----~~g~~~~~y~~k~~i~L~~l~V~~~~d~~~~~~~F~I~~~~~~~~~L~A~S~eeK~~Wi~~I~~~q~k~ 548 (1049)
T 3ksy_A 473 SNHGQPR----LPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRS 548 (1049)
T ss_dssp CCTTCCC----CTTSCCCSCCCCCEECCSSCCCCCCCCSSSCCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred ecCccCC----CCCCCCCceEEEEEEEcCceEEEECCCCccccceEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 9865332 223345689999999999999999999999999999998877799999999999999999999999999
Q ss_pred HHHHhhhhhcccccccCcCcCCCCCCCCcCCCCCCCceEEecc--cCCCcccccccCHHHHHHHHccCCCCChhHHHHHH
Q psy17173 557 MLERTLDSIILDEEKKHPLRMPSPEYYSFAEPDSCENIILEEK--QNTNMPLIKGATLHKLIERLTYHIYADPAFIGTFL 634 (1108)
Q Consensus 557 ~l~~~lds~l~~eek~~pL~lp~p~~~~~~epds~~~I~fe~~--~~~~~~~IkagTL~kLIe~Lt~~~~~D~~f~~~FL 634 (1108)
++++++++.+.++++.+|+++|+|..|.|++||++++|+|++. +.+|++.|+||||++||++||++.+.|+.|+.+||
T Consensus 549 ~~~r~~~s~~~~~ek~~~l~~p~~~~~~f~~~d~~~~i~~~~~~~~~~~~~~IkagTL~~LVe~Lt~~~~~D~~f~~~FL 628 (1049)
T 3ksy_A 549 TLERMLDVTMLQEEKEEQMRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRTFL 628 (1049)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCCTTTCGGGSCCCTTTEEECSSSCSSCCSCCEEEECHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred HHHHHhhhhhhccccccccCCCCccccccccCCCCcceEEeccCCCCCCcceeeccCHHHHHHHHccccCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999985 55789999999999999999999999999999999
Q ss_pred HhccccCCHHHHHHHHHHhcCCCCCCcccccCc-cchhhhhhHHHHHHHhhhccchhhhHHHHHHHHHHhhcccccccCH
Q psy17173 635 TTYRSFTTPTELLDLLIDRFNVPDPNKVFENNN-ADIEESILREDIIRYKKELCQPVQFRVLNVFRQWVQHHFYDFQRDQ 713 (1108)
Q Consensus 635 lTyrsFttp~~LL~~Li~Ry~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vq~rVl~vl~~Wi~~~~~DF~~d~ 713 (1108)
+|||+||||.+||++|++||+.+.|.....+.. ...|+++..++|++|++.+.++||.||+++|+.|+++||+||..|+
T Consensus 629 lTyRsF~tp~elL~lLi~Ry~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ir~rV~~vLk~Wle~~~~DF~~d~ 708 (1049)
T 3ksy_A 629 TTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDA 708 (1049)
T ss_dssp HSCTTTSCHHHHHHHHHHHHCCCCCCCCHHHHHHTTSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCH
T ss_pred HHhhccCCHHHHHHHHHHHhccCCCccchhhhhhccccccchhHHHHHHHHhhccchhhhHHHHHHHHHHhCcccccCCH
Confidence 999999999999999999999987753221110 0122333457888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhhhhhh--hhhhcccCCCCCCccccccCCCC-ccccccccCHHHHHHH
Q psy17173 714 NLLEKLKSFLLNEISGKSLRKWADIVLNLIQRKELDLE--KEITFAFNNSPPPIEVHVPINSI-DEFNILIAHPVEIARQ 790 (1108)
Q Consensus 714 ~ll~~L~~Fl~~~v~~~~~~k~~~~l~~~l~r~~~~~~--~~~~~~~~~~pp~i~~~~~~p~~-~~~~ll~~~p~eiA~Q 790 (1108)
.++..|.+|+.. +.++.+++++.++.+.++++..... ......+..+||++.+....++. ..++|++++|.+||+|
T Consensus 709 ~Ll~~L~~Fl~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~pp~~~~~~~~~~~~~~~~ll~~~~~elA~Q 787 (1049)
T 3ksy_A 709 YLLQRMEEFIGT-VRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQ 787 (1049)
T ss_dssp HHHHHHHHHHHH-CCCTTHHHHHHHHHHHHHHHHHHHCC---CCCCCCSCCCCCCCCSSCTTCTTTCCTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHhhccccCccccccCCCCCCchhhcccCccccCCcccccCCHHHHHHH
Confidence 999999999994 7788889999999998887654322 12234566677777777655543 6789999999999999
Q ss_pred HhHHHHHHhcCCChhhhhcccccCCCCCCCCchHHHHHHHHhhHhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcCC
Q psy17173 791 LTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNN 870 (1108)
Q Consensus 791 LTl~e~~lf~~I~~~Ell~~~w~k~~~~~~~pni~~~i~~fn~ls~wv~~~IL~~~~~~~Ra~~i~kfI~vA~~~~~l~N 870 (1108)
||++|+++|++|.|.||++++|+++++...+||+.+++.+||.+++||+++||.+.++++||++|++||+||.+|+++||
T Consensus 788 LTlid~~lf~~I~p~E~l~~~w~~~~~~~~~pn~~~~i~~~n~~s~wV~~~Il~~~~~~~Ra~~i~~fI~iA~~c~~l~N 867 (1049)
T 3ksy_A 788 LTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNN 867 (1049)
T ss_dssp HHHHHHHHHHHCCGGGGSSSTTTSSCHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988777799999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcccccccchhhhhcCChHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcccchhhhHhHHHHHHhcCCCC
Q psy17173 871 FNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDF 950 (1108)
Q Consensus 871 Fns~~aI~sgL~s~~I~RLk~Tw~~l~~~~~k~l~~l~~l~~~n~~~yR~~l~~~~~p~IPflGv~L~DL~~i~egnp~~ 950 (1108)
|||+|||++||++++|+|||+||+.|+++.++.|+++..++++||++||..++++++|||||+|+||+||+|+++|||++
T Consensus 868 fnsl~aIisgL~s~~I~RLk~TW~~v~~~~~~~~~~l~~l~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~eg~p~~ 947 (1049)
T 3ksy_A 868 FNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEV 947 (1049)
T ss_dssp HHHHHHHHHHHHSHHHHTCTTTTTSSCHHHHHHHHHHHTTTHHHHHHHHHHHTTCCSSCCCCTHHHHHHHHHHHHHSCSE
T ss_pred HHHHHHHHHHcccchhHhHHHHHHHCCHHHHHHHHHHHhhchHHHHHHHHHHhhCCCCccceeHHHHHHHHHHHccCCcc
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCC--CCcccHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHhcCCCCCCCchhhHHHHHHHhhhccCCCCCCCCCC
Q psy17173 951 LPD--SKLINFTKRRKVAEIISEIQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCNILFEQSLLIEPRHATHVPKF 1028 (1108)
Q Consensus 951 ~~~--~~lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~e~~d~ly~~Sl~iEPr~~~~~~~~ 1028 (1108)
+++ +|+|||+|+++++++|.+|++||+.+|+|.+++.|++||.+++++..++|++++|++|++|+++|||+++.+|++
T Consensus 948 ~~~~~~~lINf~K~~~~~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~~~~d~ly~lSl~~EPr~~~~~~~~ 1027 (1049)
T 3ksy_A 948 LKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRF 1027 (1049)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHHTTTSSCCCCCCCHHHHHHHHSCCTTTTSCHHHHHHHHHHHHHHHSCCSSSCCCCC
T ss_pred ccCCCCCeEcHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHhcccccccCchhhHHHHHHHHHHhCCCCCCCCCCC
Confidence 863 479999999999999999999999999999999999999998888888998889999999999999999999999
Q ss_pred CCCCCCCccCCCCccccCCCcc
Q psy17173 1029 PRKWPNISLKSPLVKIKKTRVL 1050 (1108)
Q Consensus 1029 ~~k~~~~~~~~~~~~~~~~~~~ 1050 (1108)
|||+ ..++||||++|.++|..
T Consensus 1028 ~~~~-~~~~~~~~~~~~~~~~~ 1048 (1049)
T 3ksy_A 1028 PKKY-SYPLKSPGVRPSNPRPG 1048 (1049)
T ss_dssp CCCC-CSCCCCCCSCCCCC---
T ss_pred Cccc-cccCCCCCCCCcccCCC
Confidence 9997 89999999999988743
|
| >2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A | Back alignment and structure |
|---|
| >3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
| >2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 | Back alignment and structure |
|---|
| >2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D | Back alignment and structure |
|---|
| >2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A | Back alignment and structure |
|---|
| >2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A | Back alignment and structure |
|---|
| >1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A* | Back alignment and structure |
|---|
| >3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens} | Back alignment and structure |
|---|
| >3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 | Back alignment and structure |
|---|
| >3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A | Back alignment and structure |
|---|
| >1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A | Back alignment and structure |
|---|
| >3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A | Back alignment and structure |
|---|
| >3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A | Back alignment and structure |
|---|
| >1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A | Back alignment and structure |
|---|
| >2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A | Back alignment and structure |
|---|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
| >1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1 | Back alignment and structure |
|---|
| >3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A | Back alignment and structure |
|---|
| >2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1 | Back alignment and structure |
|---|
| >1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 | Back alignment and structure |
|---|
| >1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1 | Back alignment and structure |
|---|
| >2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C | Back alignment and structure |
|---|
| >2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C* | Back alignment and structure |
|---|
| >2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1 | Back alignment and structure |
|---|
| >1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ... | Back alignment and structure |
|---|
| >1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 | Back alignment and structure |
|---|
| >1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B* | Back alignment and structure |
|---|
| >3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens} | Back alignment and structure |
|---|
| >1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 | Back alignment and structure |
|---|
| >4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C* | Back alignment and structure |
|---|
| >1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2 | Back alignment and structure |
|---|
| >2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A | Back alignment and structure |
|---|
| >2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140} | Back alignment and structure |
|---|
| >1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ... | Back alignment and structure |
|---|
| >2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A | Back alignment and structure |
|---|
| >1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A | Back alignment and structure |
|---|
| >2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A | Back alignment and structure |
|---|
| >1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* | Back alignment and structure |
|---|
| >1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A | Back alignment and structure |
|---|
| >1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A* | Back alignment and structure |
|---|
| >2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A | Back alignment and structure |
|---|
| >1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A* | Back alignment and structure |
|---|
| >1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A | Back alignment and structure |
|---|
| >2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A | Back alignment and structure |
|---|
| >2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B | Back alignment and structure |
|---|
| >1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A | Back alignment and structure |
|---|
| >2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A* | Back alignment and structure |
|---|
| >2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A | Back alignment and structure |
|---|
| >1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A | Back alignment and structure |
|---|
| >2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica} | Back alignment and structure |
|---|
| >2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A | Back alignment and structure |
|---|
| >2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A | Back alignment and structure |
|---|
| >2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D* | Back alignment and structure |
|---|
| >1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ... | Back alignment and structure |
|---|
| >2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus} | Back alignment and structure |
|---|
| >2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A* | Back alignment and structure |
|---|
| >1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2 | Back alignment and structure |
|---|
| >2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A | Back alignment and structure |
|---|
| >2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A | Back alignment and structure |
|---|
| >2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A | Back alignment and structure |
|---|
| >4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens} | Back alignment and structure |
|---|
| >1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} | Back alignment and structure |
|---|
| >1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* | Back alignment and structure |
|---|
| >1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A | Back alignment and structure |
|---|
| >1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A* | Back alignment and structure |
|---|
| >3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus} | Back alignment and structure |
|---|
| >3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A | Back alignment and structure |
|---|
| >3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* | Back alignment and structure |
|---|
| >2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
| >2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2 | Back alignment and structure |
|---|
| >3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus} | Back alignment and structure |
|---|
| >4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* | Back alignment and structure |
|---|
| >2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B | Back alignment and structure |
|---|
| >4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A* | Back alignment and structure |
|---|
| >1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3 | Back alignment and structure |
|---|
| >3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W | Back alignment and structure |
|---|
| >1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 | Back alignment and structure |
|---|
| >1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 | Back alignment and structure |
|---|
| >4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus} | Back alignment and structure |
|---|
| >1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A | Back alignment and structure |
|---|
| >1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3 | Back alignment and structure |
|---|
| >1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B | Back alignment and structure |
|---|
| >3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T | Back alignment and structure |
|---|
| >4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A | Back alignment and structure |
|---|
| >3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} | Back alignment and structure |
|---|
| >1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ... | Back alignment and structure |
|---|
| >3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A | Back alignment and structure |
|---|
| >1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1108 | ||||
| d1nvus_ | 481 | a.117.1.1 (S:) Son of sevenless protein homolog 1 | 1e-132 | |
| d1q9ca_ | 172 | a.22.1.3 (A:) Histone domain of Son of sevenless p | 1e-40 | |
| d1dbha1 | 207 | a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {H | 7e-24 | |
| d1dbha2 | 133 | b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {H | 2e-19 | |
| d2dfka2 | 162 | b.55.1.1 (A:240-401) Rho guanine nucleotide exchan | 2e-12 | |
| d1f5xa_ | 208 | a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [Ta | 2e-12 | |
| d1by1a_ | 209 | a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxI | 3e-12 | |
| d1txda1 | 234 | a.87.1.1 (A:766-999) Rho guanine nucleotide exchan | 3e-12 | |
| d1xcga1 | 228 | a.87.1.1 (A:714-941) Rho guanine nucleotide exchan | 7e-12 | |
| d1tzya_ | 106 | a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus) | 3e-11 | |
| d1v61a_ | 132 | b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (M | 8e-11 | |
| d1ki1b1 | 210 | a.87.1.1 (B:1229-1438) GEF of intersectin {Human ( | 3e-10 | |
| d1u35c1 | 106 | a.22.1.1 (C:814-919) macro-H2A.1, histone domain { | 1e-09 | |
| d2dfka1 | 203 | a.87.1.1 (A:37-239) Rho guanine nucleotide exchang | 2e-09 | |
| d1ntya2 | 121 | b.55.1.1 (A:1415-1535) Triple functional domain pr | 3e-09 | |
| d1foea1 | 206 | a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma in | 3e-09 | |
| d1kz7a1 | 195 | a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse | 4e-09 | |
| d1kz7a2 | 147 | b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse | 2e-08 | |
| d1xcga2 | 140 | b.55.1.1 (A:942-1081) Rho guanine nucleotide excha | 4e-06 | |
| d1txda2 | 114 | b.55.1.1 (A:1020-1133) Rho guanine nucleotide exch | 4e-06 | |
| d1zc3b1 | 109 | b.55.1.1 (B:171-279) Exocyst complex protein EXO84 | 1e-05 | |
| d1ki1b2 | 142 | b.55.1.1 (B:1439-1580) GEF of intersectin {Human ( | 2e-05 |
| >d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 481 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Ras GEF superfamily: Ras GEF family: Ras GEF domain: Son of sevenless protein homolog 1 (sos-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 407 bits (1047), Expect = e-132
Identities = 257/482 (53%), Positives = 344/482 (71%), Gaps = 10/482 (2%)
Query: 575 LRMPSPEYYSFAEPDSCENIILEEK--QNTNMPLIKGATLHKLIERLTYHIYADPAFIGT 632
+R+PS + Y FAEPDS ENII EE +P+IK T+ KLIERLTYH+YADP F+ T
Sbjct: 2 MRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRT 61
Query: 633 FLTTYRSFTTPTELLDLLIDRFNVPDPNKVFENNNADIE-ESILREDIIRYKKELCQPVQ 691
FLTTYRSF P ELL L+I+RF +P+P + A + L ++ R++KE QPVQ
Sbjct: 62 FLTTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYIQPVQ 121
Query: 692 FRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEISGKSLRKWADIVLNLIQRKELDLE 751
RVLNV R WV+HHFYDF+RD LL++++ F+ + GK+++KW + + +IQRK++ +
Sbjct: 122 LRVLNVCRHWVEHHFYDFERDAYLLQRMEEFI-GTVRGKAMKKWVESITKIIQRKKIARD 180
Query: 752 --KEITFAFNNSPPPIEVHVPINS-IDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELV 808
F +SPP +E H+ I+ F++L HP+EIARQLTLLE D +R+V+PSELV
Sbjct: 181 NGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELV 240
Query: 809 GSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKL 868
GSVWTK++K SPNL+K+++HTTN T W EK IVE EN +ER+A+++RIIE++ V Q+L
Sbjct: 241 GSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQEL 300
Query: 869 NNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPP 928
NNFNGVL V SAM S+ VYRL TF+ +P+R +K+LE+A EL+ DH+KKY KLR+INPP
Sbjct: 301 NNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPP 360
Query: 929 CIPFFGMYLTNILHIEEGNPDFLPDS--KLINFTKRRKVAEIISEIQQYQNEPYCLSVVP 986
C+PFFG+YLTNIL EEGNP+ L +LINF+KRRKVAEI EIQQYQN+PYCL V
Sbjct: 361 CVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVES 420
Query: 987 IYREFFENLSPFEGIDDNEMCNILFEQSLLIEPRHATHVPKFPRKWPNISLKSPLVKIKK 1046
+ FFENL+P + E + LF +SL IEPR+ +P+FP+K+ + LKSP V+
Sbjct: 421 DIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKY-SYPLKSPGVRPSN 479
Query: 1047 TR 1048
R
Sbjct: 480 PR 481
|
| >d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
| >d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
| >d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
| >d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 162 | Back information, alignment and structure |
|---|
| >d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} Length = 208 | Back information, alignment and structure |
|---|
| >d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]} Length = 209 | Back information, alignment and structure |
|---|
| >d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 234 | Back information, alignment and structure |
|---|
| >d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Length = 228 | Back information, alignment and structure |
|---|
| >d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Length = 106 | Back information, alignment and structure |
|---|
| >d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]} Length = 132 | Back information, alignment and structure |
|---|
| >d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Length = 210 | Back information, alignment and structure |
|---|
| >d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
| >d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 203 | Back information, alignment and structure |
|---|
| >d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Length = 121 | Back information, alignment and structure |
|---|
| >d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 206 | Back information, alignment and structure |
|---|
| >d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} Length = 195 | Back information, alignment and structure |
|---|
| >d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} Length = 147 | Back information, alignment and structure |
|---|
| >d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Length = 140 | Back information, alignment and structure |
|---|
| >d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
| >d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 109 | Back information, alignment and structure |
|---|
| >d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Length = 142 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1108 | |||
| d1nvus_ | 481 | Son of sevenless protein homolog 1 (sos-1) {Human | 100.0 | |
| d1q9ca_ | 172 | Histone domain of Son of sevenless protein {Human | 100.0 | |
| d1dbha1 | 207 | Son of sevenless-1 (sos-1) {Human (Homo sapiens) [ | 100.0 | |
| d1ki1b1 | 210 | GEF of intersectin {Human (Homo sapiens) [TaxId: 9 | 99.97 | |
| d2dfka1 | 203 | Rho guanine nucleotide exchange factor 9, Collybis | 99.97 | |
| d1xcga1 | 228 | Rho guanine nucleotide exchange factor 11, PDZ-Rho | 99.96 | |
| d1f5xa_ | 208 | RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} | 99.96 | |
| d1by1a_ | 209 | beta-pix {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1foea1 | 206 | GEF of TIAM1 (T-Lymphoma invasion and metastasis i | 99.96 | |
| d1txda1 | 234 | Rho guanine nucleotide exchange factor 12 {Human ( | 99.96 | |
| d1tzya_ | 106 | Histone H2A {Chicken (Gallus gallus), erythrocytes | 99.95 | |
| d1u35c1 | 106 | macro-H2A.1, histone domain {Human (Homo sapiens) | 99.95 | |
| d1kz7a1 | 195 | Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId | 99.95 | |
| d1ntya1 | 184 | Triple functional domain protein TRIO {Human (Homo | 99.94 | |
| d1f66c_ | 103 | Histone H2A {Human (Homo sapiens), variant H2A.Z [ | 99.93 | |
| d1dbha2 | 133 | Son of sevenless-1 (sos-1) {Human (Homo sapiens) [ | 99.86 | |
| d2dfka2 | 162 | Rho guanine nucleotide exchange factor 9, Collybis | 99.79 | |
| d1v61a_ | 132 | Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [ | 99.67 | |
| d1zc3b1 | 109 | Exocyst complex protein EXO84 {Rat (Rattus norvegi | 99.66 | |
| d1kz7a2 | 147 | Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId | 99.59 | |
| d1ntya2 | 121 | Triple functional domain protein TRIO {Human (Homo | 99.58 | |
| d1ki1b2 | 142 | GEF of intersectin {Human (Homo sapiens) [TaxId: 9 | 99.46 | |
| d1xcga2 | 140 | Rho guanine nucleotide exchange factor 11, PDZ-Rho | 99.38 | |
| d1txda2 | 114 | Rho guanine nucleotide exchange factor 12 {Human ( | 99.35 | |
| d1fhoa_ | 119 | UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: | 99.32 | |
| d1f1ea_ | 151 | Archaeal histone {Archaeon Methanopyrus kandleri [ | 98.94 | |
| d1jfia_ | 66 | Negative cofactor 2, NC2, alpha chain {Human (Homo | 98.73 | |
| d2i5fa1 | 104 | Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d1x1ga1 | 116 | Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d1wgqa_ | 109 | FYVE, RhoGEF and PH domain containing protein 6, F | 98.38 | |
| d1faoa_ | 100 | Dual adaptor of phosphotyrosine and 3-phosphoinosi | 98.33 | |
| d1plsa_ | 113 | Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} | 98.31 | |
| d2fjla1 | 101 | Phosphoinositide phospholipase C, PLC-gamma-1 {Rat | 98.3 | |
| d1u5da1 | 106 | Src kinase-associated phosphoprotein SKAP55 (SCAP1 | 98.25 | |
| d1u5fa1 | 111 | Src-associated adaptor protein Skap2 {Mouse (Mus m | 98.21 | |
| d1v89a_ | 118 | Rho-GTPase-activating protein 25 (KIAA0053) {Human | 98.19 | |
| d1eaza_ | 103 | Tapp1 {Human (Homo sapiens) [TaxId: 9606]} | 98.19 | |
| d1omwa2 | 119 | G-protein coupled receptor kinase 2 (beta-adrenerg | 98.13 | |
| d1upqa_ | 107 | Phosphoinositol 3-phosphate binding protein-1, PEP | 98.09 | |
| d1tzyb_ | 92 | Histone H2B {Chicken (Gallus gallus), erythrocytes | 98.05 | |
| d1btka_ | 169 | Bruton's tyrosine kinase {Human (Homo sapiens) [Ta | 98.02 | |
| d2coda1 | 102 | Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96 | 97.96 | |
| d1wg7a_ | 150 | Dedicator of cytokinesis protein 9, DOCK9 {Human ( | 97.88 | |
| d1u5ea1 | 209 | Src-associated adaptor protein Skap2 {Mouse (Mus m | 97.88 | |
| d1n1jb_ | 78 | Nuclear transcription factor Y subunit gamma (Nf-Y | 97.87 | |
| d1unqa_ | 118 | Rac-alpha serine/threonine kinase {Human (Homo sap | 97.85 | |
| d2cofa1 | 95 | KIAA1914 {Human (Homo sapiens) [TaxId: 9606]} | 97.83 | |
| d2dyna_ | 111 | Dynamin {Human (Homo sapiens) [TaxId: 9606]} | 97.79 | |
| d1btna_ | 106 | beta-spectrin {Mouse (Mus musculus), brain [TaxId: | 97.77 | |
| d2j59m1 | 133 | Rho GTPase-activating protein 21 {Human (Homo sapi | 97.73 | |
| d1x1fa1 | 136 | Signal-transducing adaptor protein 1, STAP-1 {Huma | 97.62 | |
| d1qqga1 | 103 | Insulin receptor substrate 1, IRS-1 {Human (Homo s | 97.58 | |
| d1wjma_ | 123 | beta-spectrin {Human (Homo sapiens), brain 2 isofo | 97.53 | |
| d1fgya_ | 127 | Grp1 {Mouse (Mus musculus) [TaxId: 10090]} | 97.53 | |
| d1v88a_ | 130 | Oxysterol binding protein-related protein 8 (ORP-8 | 97.47 | |
| d1w1ha_ | 147 | 3-phosphoinositide dependent protein kinase-1 {Hum | 97.47 | |
| d1wi1a_ | 126 | Calcium-dependent activator protein for secretion, | 97.36 | |
| d1v5ua_ | 117 | SET binding factor 1, Sbf1 {Mouse (Mus musculus) [ | 97.36 | |
| d2elba2 | 101 | DCC-interacting protein 13-alpha, APPL1 {Human (Ho | 97.34 | |
| d1foea2 | 162 | GEF of TIAM1 (T-Lymphoma invasion and metastasis i | 97.27 | |
| d2coca1 | 99 | FYVE, RhoGEF and PH domain containing protein 3, F | 97.23 | |
| d1droa_ | 122 | beta-spectrin {Fruit fly (Drosophila melanogaster) | 97.13 | |
| d1v5ma_ | 136 | SH2 and PH domain-containing adapter protein APS { | 97.06 | |
| d1v5pa_ | 126 | Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} | 96.87 | |
| d2coaa1 | 112 | Protein kinase c, d2 type {Human (Homo sapiens) [T | 96.8 | |
| d1htaa_ | 68 | Archaeal histone {Archaeon Methanothermus fervidus | 96.53 | |
| d1maia_ | 119 | Phospholipase C delta-1 {Rat (Rattus norvegicus) [ | 96.29 | |
| d1ku5a_ | 66 | Archaeal histone {Archaeon (Pyrococcus horikoshii) | 95.94 | |
| d1f1ea_ | 151 | Archaeal histone {Archaeon Methanopyrus kandleri [ | 95.73 | |
| d1n1ja_ | 87 | Nuclear transcription factor Y subunit beta (Nf-Yb | 94.66 | |
| d1jfib_ | 135 | Negative cofactor 2, NC2, beta chain {Human (Homo | 92.28 | |
| d2bykb1 | 89 | Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax | 83.56 | |
| d2huec1 | 82 | Histone H4 {African clawed frog (Xenopus laevis) [ | 81.9 |
| >d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Ras GEF superfamily: Ras GEF family: Ras GEF domain: Son of sevenless protein homolog 1 (sos-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.1e-83 Score=762.44 Aligned_cols=473 Identities=54% Similarity=0.957 Sum_probs=406.9
Q ss_pred cCcCCCCCCCCcCCCCCCCceEEecc--cCCCcccccccCHHHHHHHHccCCCCChhHHHHHHHhccccCCHHHHHHHHH
Q psy17173 574 PLRMPSPEYYSFAEPDSCENIILEEK--QNTNMPLIKGATLHKLIERLTYHIYADPAFIGTFLTTYRSFTTPTELLDLLI 651 (1108)
Q Consensus 574 pL~lp~p~~~~~~epds~~~I~fe~~--~~~~~~~IkagTL~kLIe~Lt~~~~~D~~f~~~FLlTyrsFttp~~LL~~Li 651 (1108)
++++|+++.|+|.+||++++|+|++. +.+|++.||||||++||++||++...|++|+++||+|||+||||.+||++|+
T Consensus 1 ~~~~p~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~ik~gTl~~LIe~Lt~~~~~D~~F~~~FLlTYRsF~Tp~eLL~~Li 80 (481)
T d1nvus_ 1 QMRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLII 80 (481)
T ss_dssp CCCCCCTTTCGGGSCCCTTTEEECC------CCCCEEEECHHHHHHHHTCSSCCCHHHHHHHHHHGGGTSCHHHHHHHHH
T ss_pred CCcCCCcccccccCCCCCCCeecccCCccCCCCceeeecCHHHHHHHhccCCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 47899999999999999999999885 4678999999999999999999888999999999999999999999999999
Q ss_pred HhcCCCCCCcccccCcc-chhhhhhHHHHHHHhhhccchhhhHHHHHHHHHHhhcccccccCHHHHHHHHHHHhhhccCc
Q psy17173 652 DRFNVPDPNKVFENNNA-DIEESILREDIIRYKKELCQPVQFRVLNVFRQWVQHHFYDFQRDQNLLEKLKSFLLNEISGK 730 (1108)
Q Consensus 652 ~Ry~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vq~rVl~vl~~Wi~~~~~DF~~d~~ll~~L~~Fl~~~v~~~ 730 (1108)
+||+.+.++........ .........+++.+.+++..+++.||+++|+.|++.||+||..|..++..+..|+. .+.+.
T Consensus 81 ~Rf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rVl~~l~~Wve~~~~df~~d~~ll~~l~~f~~-~~~~~ 159 (481)
T d1nvus_ 81 ERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIG-TVRGK 159 (481)
T ss_dssp HHHCCCCCCCCHHHHHHHHTTCCCCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTHHHHHCHHHHHHHHHHHH-HCCST
T ss_pred HHhcCCCCcchhhHHHHhhcccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHH-HHhhh
Confidence 99999887542211000 00001123456777888889999999999999999999999999999999999999 45666
Q ss_pred hhHHHHHHHHHHHHHhhhhhh--hhhhcccCCCCCCccccccCCCC-ccccccccCHHHHHHHHhHHHHHHhcCCChhhh
Q psy17173 731 SLRKWADIVLNLIQRKELDLE--KEITFAFNNSPPPIEVHVPINSI-DEFNILIAHPVEIARQLTLLEFDYFRSVKPSEL 807 (1108)
Q Consensus 731 ~~~k~~~~l~~~l~r~~~~~~--~~~~~~~~~~pp~i~~~~~~p~~-~~~~ll~~~p~eiA~QLTl~e~~lf~~I~~~El 807 (1108)
.+.+..+.+.+.++++..... ..........+|+.......+.. ..++|++++|.|||+|||++|+++|++|.|.||
T Consensus 160 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~eiA~QLTl~~~~~f~~I~~~E~ 239 (481)
T d1nvus_ 160 AMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSEL 239 (481)
T ss_dssp TTHHHHHHHHHHHHHHHHC------CCCCCSSCCCCCCCCSSCTTCTTTCCTTTSCHHHHHHHHHHHHHHHHHTCCGGGT
T ss_pred hhHHHHHHHHHHHHHHHhhhccCccccccccCCCCccccccCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 677777777777776544321 11112222334444444333332 567899999999999999999999999999999
Q ss_pred hcccccCCCCCCCCchHHHHHHHHhhHhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHhhcccccc
Q psy17173 808 VGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVY 887 (1108)
Q Consensus 808 l~~~w~k~~~~~~~pni~~~i~~fn~ls~wv~~~IL~~~~~~~Ra~~i~kfI~vA~~~~~l~NFns~~aI~sgL~s~~I~ 887 (1108)
++++|+++++...+|||.+++++||.+++||+.+||.++++++|+++|++||+||.+|+++|||||+|||++||++++|+
T Consensus 240 l~~~~~~~~~~~~~pni~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~fI~ia~~~~~l~Nf~s~~aI~~~L~~~~I~ 319 (481)
T d1nvus_ 240 VGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVY 319 (481)
T ss_dssp GGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHH
T ss_pred HHHHHcccCCCCCCCcHHHHHHHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCcch
Confidence 99999998887789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcCChHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcccchhhhHhHHHHHHhcCCCCCC--CCCcccHHHHHHH
Q psy17173 888 RLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLP--DSKLINFTKRRKV 965 (1108)
Q Consensus 888 RLk~Tw~~l~~~~~k~l~~l~~l~~~n~~~yR~~l~~~~~p~IPflGv~L~DL~~i~egnp~~~~--~~~lINf~K~r~i 965 (1108)
||++||+.|+.+.++.|++|..++++||++||..++++.+|||||||+||+||+++++|||++++ ++|+|||.|++++
T Consensus 320 RL~~tw~~l~~~~~~~~~~l~~l~~~n~~~yr~~l~~~~~p~IP~lg~~l~Dl~~~~~gn~~~~~~~~~~lINf~K~~~i 399 (481)
T d1nvus_ 320 RLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKV 399 (481)
T ss_dssp TCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCBCCSHHHHHHHHHHHHSSCSEEEETTEEEEEHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcchhHHHHHHHHhcCCCCeEeeeccHHHHHHHHHhcCCccccCCCCceEcHHHHHHH
Confidence 99999999999999999999999889999999999999999999999999999999999999985 3579999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCchHHHHHHHhcCCCCCCCchhhHHHHHHHhhhccCCCCCCCCCCCCCCCCCccCCCCcccc
Q psy17173 966 AEIISEIQQYQNEPYCLSVVPIYREFFENLSPFEGIDDNEMCNILFEQSLLIEPRHATHVPKFPRKWPNISLKSPLVKIK 1045 (1108)
Q Consensus 966 ~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~e~~d~ly~~Sl~iEPr~~~~~~~~~~k~~~~~~~~~~~~~~ 1045 (1108)
+++|.+|++||+.+|+|.+++.|++||.++.......+...+|.+|++|+++|||+++.+|+.+++. ..+++|||++|+
T Consensus 400 ~~~i~~i~~~Q~~~y~~~~~~~i~~~l~~~~~~~~~~~~~~~d~l~~lS~~~EPr~~~~~~~~~~~~-~~~~~~~~~~~~ 478 (481)
T d1nvus_ 400 AEITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKY-SYPLKSPGVRPS 478 (481)
T ss_dssp HHHHHHHHHHHSCCCCCCCCHHHHHHHHTCCTTTTCCHHHHHHHHHHHHHHHSCCTTSCCCCCCCCC-CSCCCCCCSSCC
T ss_pred HHHHHHHHHHhcCCCCCCcChHHHHHHHhhhhhhhhhhccchHHHHHHHHHhCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Confidence 9999999999999999999999999999887665555555678999999999999998888888874 699999999998
Q ss_pred CCC
Q psy17173 1046 KTR 1048 (1108)
Q Consensus 1046 ~~~ 1048 (1108)
..|
T Consensus 479 ~~~ 481 (481)
T d1nvus_ 479 NPR 481 (481)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
|
| >d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
| >d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]} | Back information, alignment and structure |
|---|
| >d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
| >d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
|---|