Psyllid ID: psy17183

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVAL
Secondary Structure (PSIPRED)
cccEEEcccHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHcccccccccccccccccccEEccccccHHHHcccccccccEEEEEEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEccHHHEEEHHHHHHcccEEEEEEEcccccEEEEEccccccccccccccccccccEEEccccHHHHHcccEEccccEEcEEEEEEccccEEEEEEEEcccEcccHHHHHHHHHHHHHHHHHccEEccccccccccEcccc
Coil and Loop (DISEMBL)
MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTktltatssnrsaidpskivpllsdstHAISKTYGCylssaghslRAYYIIDkrgylrsmnvsdiqvGRNLKEILRQVEAFQlvdstdtqcpvnwttgqpsvkval
Flexible Loop (DISEMBL)
MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTltatssnrsaidpSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQlvdstdtqcpvnwttgqpsvkval
Low Complexity Region (SEG)
MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVAL
Disordered region (IsUnstruct)
****IACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTAT*********SKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWT**********
Disordered Region (DISOPRED)
MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV****
Disordered Region (DISEMBL)
MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVAL
Disordered Region (DISPRO)
*DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVAL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
Q13162	271	Peroxiredoxin-4 OS=Homo s	yes	N/A	0.779	0.416	0.440	6e-24
O08807	274	Peroxiredoxin-4 OS=Mus mu	yes	N/A	0.779	0.412	0.432	2e-23
Q9Z0V5	273	Peroxiredoxin-4 OS=Rattus	yes	N/A	0.779	0.413	0.432	2e-23
Q9BGI2	274	Peroxiredoxin-4 OS=Bos ta	yes	N/A	0.779	0.412	0.423	1e-22
Q9Z0V6	257	Thioredoxin-dependent per	no	N/A	0.786	0.443	0.436	3e-22
P20108	257	Thioredoxin-dependent per	no	N/A	0.786	0.443	0.436	3e-22
P35705	257	Thioredoxin-dependent per	no	N/A	0.786	0.443	0.420	1e-21
Q5REY3	256	Thioredoxin-dependent per	no	N/A	0.786	0.445	0.411	2e-21
P30048	256	Thioredoxin-dependent per	no	N/A	0.786	0.445	0.411	2e-21
Q9JKY1	199	Peroxiredoxin-1 OS=Cricet	no	N/A	0.786	0.572	0.403	3e-21

>sp|Q13162|PRDX4_HUMAN Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1

 Score =  109 bits (272), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 5/118 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A SVDS   HLAW  T       +  + P +I PLLSD TH ISK YG YL  +GH+
Sbjct: 144 EVVACSVDSQFTHLAWINT----PRRQGGLGPIRI-PLLSDLTHQISKDYGVYLEDSGHT 198

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++
Sbjct: 199 LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETI 256

Probably involved in redox regulation of the cell. Regulates the activation of NF-kappa-B in the cytosol by a modulation of I-kappa-B-alpha phosphorylation.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 1EC: 5

>sp|O08807|PRDX4_MOUSE Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 70/118 (59%), Gaps = 5/118 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A SVDS   HLAW  T       +  + P +I PLLSD  H ISK YG YL  +GH+
Sbjct: 147 EVVACSVDSQFTHLAWINT----PRRQGGLGPIRI-PLLSDLNHQISKDYGVYLEDSGHT 201

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++
Sbjct: 202 LRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETI 259

Probably involved in redox regulation of the cell. Regulates the activation of NF-kappa-B in the cytosol by a modulation of I-kappa-B-alpha phosphorylation.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9Z0V5|PRDX4_RAT Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2 SV=1

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 70/118 (59%), Gaps = 5/118 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A SVDS   HLAW  T       +  + P +I PLLSD  H ISK YG YL  +GH+
Sbjct: 146 EVVACSVDSQFTHLAWINT----PRRQGGLGPIRI-PLLSDLNHQISKDYGVYLEDSGHT 200

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++
Sbjct: 201 LRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETI 258

Probably involved in redox regulation of the cell. Regulates the activation of NF-kappa-B in the cytosol by a modulation of I-kappa-B-alpha phosphorylation.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9BGI2|PRDX4_BOVIN Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 68/118 (57%), Gaps = 5/118 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A SVDS   HLAW  T       R     S  +PLL+D  H ISK YG YL  +GH+
Sbjct: 147 EVVACSVDSQFTHLAWINT-----PRRQGGLGSINIPLLADLNHQISKDYGVYLEDSGHT 201

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++
Sbjct: 202 LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETI 259

Probably involved in redox regulation of the cell. Regulates the activation of NF-kappa-B in the cytosol by a modulation of I-kappa-B-alpha phosphorylation.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9Z0V6|PRDX3_RAT Thioredoxin-dependent peroxide reductase, mitochondrial OS=Rattus norvegicus GN=Prdx3 PE=1 SV=2

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 74/119 (62%), Gaps = 5/119 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++AVSVDSH +HLAW  T          +    I  LLSD T  IS+ YG  L SAG +
Sbjct: 129 EVVAVSVDSHFSHLAWINT----PRKNGGLGHMNIT-LLSDLTKQISRDYGVLLESAGIA 183

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           LR  +IID  G ++ ++V+D+ VGR+++E LR V+AFQ V++    CP NWT   P++K
Sbjct: 184 LRGLFIIDPNGVIKHLSVNDLPVGRSVEEPLRLVKAFQFVETHGEVCPANWTPESPTIK 242

Involved in redox regulation of the cell. Protects radical-sensitive enzymes from oxidative damage by a radical-generating system. Acts synergistically with MAP3K13 to regulate the activation of NF-kappa-B in the cytosol.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P20108|PRDX3_MOUSE Thioredoxin-dependent peroxide reductase, mitochondrial OS=Mus musculus GN=Prdx3 PE=1 SV=1

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 74/119 (62%), Gaps = 5/119 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++AVSVDSH +HLAW  T          +    I  LLSD T  IS+ YG  L SAG +
Sbjct: 129 EVVAVSVDSHFSHLAWINT----PRKNGGLGHMNIT-LLSDITKQISRDYGVLLESAGIA 183

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           LR  +IID  G ++ ++V+D+ VGR+++E LR V+AFQ V++    CP NWT   P++K
Sbjct: 184 LRGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPESPTIK 242

Involved in redox regulation of the cell. Protects radical-sensitive enzymes from oxidative damage by a radical-generating system.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P35705|PRDX3_BOVIN Thioredoxin-dependent peroxide reductase, mitochondrial OS=Bos taurus GN=PRDX3 PE=1 SV=2

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 5/119 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++AVSVDSH +HLAW  T          +    I  LLSD T  IS+ YG  L   G +
Sbjct: 129 EVVAVSVDSHFSHLAWINT----PRKNGGLGHMNIA-LLSDLTKQISRDYGVLLEGPGLA 183

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           LR  +IID  G ++ ++V+D+ VGR+++E LR V+AFQ V++    CP NWT   P++K
Sbjct: 184 LRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVEAHGEVCPANWTPESPTIK 242

Involved in redox regulation of the cell. Protects radical-sensitive enzymes from oxidative damage by a radical-generating system.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q5REY3|PRDX3_PONAB Thioredoxin-dependent peroxide reductase, mitochondrial OS=Pongo abelii GN=PRDX3 PE=2 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 74/119 (62%), Gaps = 5/119 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++AVSVDSH +HLAW  T       ++       + LLSD T  IS+ YG  L  +G +
Sbjct: 128 EVVAVSVDSHFSHLAWINT-----PRKNGGLGHMNIALLSDLTKQISRDYGVLLEGSGLA 182

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           LR  +IID  G ++ ++V+D+ VGR+++E LR V+AFQ V++    CP NWT   P++K
Sbjct: 183 LRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQYVETHGEVCPANWTPDSPTIK 241

Involved in redox regulation of the cell. Protects radical-sensitive enzymes from oxidative damage by a radical-generating system.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P30048|PRDX3_HUMAN Thioredoxin-dependent peroxide reductase, mitochondrial OS=Homo sapiens GN=PRDX3 PE=1 SV=3

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 74/119 (62%), Gaps = 5/119 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++AVSVDSH +HLAW  T       ++       + LLSD T  IS+ YG  L  +G +
Sbjct: 128 EVVAVSVDSHFSHLAWINT-----PRKNGGLGHMNIALLSDLTKQISRDYGVLLEGSGLA 182

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           LR  +IID  G ++ ++V+D+ VGR+++E LR V+AFQ V++    CP NWT   P++K
Sbjct: 183 LRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQYVETHGEVCPANWTPDSPTIK 241

Involved in redox regulation of the cell. Protects radical-sensitive enzymes from oxidative damage by a radical-generating system. Acts synergistically with MAP3K13 to regulate the activation of NF-kappa-B in the cytosol.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9JKY1|PRDX1_CRIGR Peroxiredoxin-1 OS=Cricetulus griseus GN=PRDX1 PE=1 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 66/119 (55%), Gaps = 5/119 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           Q+I  SVDSH  HLAW  T       +  + P  I PL+SD    I++ YG   +  G S
Sbjct: 72  QVIGASVDSHFCHLAWINT----PKKQGGLGPMNI-PLVSDPKRTIAQDYGVLKADEGIS 126

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
            R  +IID +G LR + ++D+ VGR++ EILR V+AFQ  D     CP  W  G  ++K
Sbjct: 127 FRGLFIIDDKGILRQITINDLPVGRSVDEILRLVQAFQFTDKHGEVCPAGWKPGSDTIK 185

Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system but not from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2) (By similarity). Reduces an intramolecular disulfide bond in GDPD5 that gates the ability to GDPD5 to drive postmitotic motor neuron differentiation.

Cricetulus griseus (taxid: 10029)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
239791403	190	ACYPI004583 [Acyrthosiphon pisum]	0.779	0.594	0.542	2e-30
253735677	426	thioredoxin peroxidase 2-like [Acyrthosi	0.779	0.265	0.550	2e-30
193697661	245	PREDICTED: peroxiredoxin-4-like [Acyrtho	0.765	0.453	0.475	5e-24
451899172	245	peroxiredoxin-4 [Amphioctopus fangsiao]	0.772	0.457	0.470	8e-24
195375271	244	GJ12891 [Drosophila virilis] gi|19415358	0.751	0.446	0.482	2e-23
195429068	248	GK16580 [Drosophila willistoni] gi|19415	0.751	0.439	0.482	3e-23
195135294	243	GI16636 [Drosophila mojavensis] gi|19391	0.779	0.465	0.457	5e-23
359324139	257	PREDICTED: peroxiredoxin-4-like isoform	0.786	0.443	0.453	5e-23
195012352	243	GH15986 [Drosophila grimshawi] gi|193897	0.779	0.465	0.457	6e-23
389611229	247	thioredoxin peroxidase 2 [Papilio polyte	0.772	0.453	0.453	6e-23

>gi|239791403|dbj|BAH72173.1| ACYPI004583 [Acyrthosiphon pisum]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/118 (54%), Positives = 86/118 (72%), Gaps = 5/118 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A SVDS+L+H AW++TL    S+     P   +PLLSD TH ISK+YGCYLS  GHS
Sbjct: 77  EVVACSVDSYLSHQAWSRTL---RSDGGIAIPK--MPLLSDPTHVISKSYGCYLSELGHS 131

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           LRA+YIID RG LR + ++D+ VGRN+ EILR +EAFQ  D T+T CP +W  G+P++
Sbjct: 132 LRAHYIIDMRGILRHVTINDLPVGRNISEILRLLEAFQYTDETETLCPADWKPGEPTI 189

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|253735677|ref|NP_001156696.1| thioredoxin peroxidase 2-like [Acyrthosiphon pisum]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/118 (55%), Positives = 86/118 (72%), Gaps = 5/118 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A SVDS+L+H AW++TL   S    AI     +PLLSD TH ISK+YGCYLS  GHS
Sbjct: 313 EVVACSVDSYLSHQAWSRTLR--SDGGIAI---PKMPLLSDPTHVISKSYGCYLSELGHS 367

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           LRA+YIID RG LR + ++D+ VGRN+ EILR +EAFQ  D T+T CP +W  G+P++
Sbjct: 368 LRAHYIIDMRGILRHVTINDLPVGRNISEILRLLEAFQYTDETETLCPADWKPGEPTI 425

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193697661|ref|XP_001949571.1| PREDICTED: peroxiredoxin-4-like [Acyrthosiphon pisum]

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSS--NRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG 81
            ++A SVDSH  HLAW  T        N S       +PLLSD TH ISK YG YLS  G
Sbjct: 116 NVVAASVDSHFTHLAWVNTPRKDGGLGNLS-------IPLLSDMTHKISKDYGVYLSDVG 168

Query: 82  HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           HSLR  +IID RG LR + ++D+ VGR++ E LR V+AFQ  D     CP NW  G+ ++
Sbjct: 169 HSLRGLFIIDNRGILRQITMNDLPVGRSVDETLRLVQAFQYTDMHGEVCPANWKPGEQTI 228

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|451899172|gb|AGF80254.1| peroxiredoxin-4 [Amphioctopus fangsiao]

 Score =  115 bits (287), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 73/117 (62%), Gaps = 5/117 (4%)

Query: 25  IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSL 84
           ++A SVDSH  HLAW  T      N+  + P  I PLLSD TH ISK+YG +L + GHSL
Sbjct: 115 VVACSVDSHFTHLAWINT----PRNKGGLGPLNI-PLLSDLTHEISKSYGVFLQNLGHSL 169

Query: 85  RAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           R  +IID +G LR + ++D+ VGR++ E LR V+AFQ  DS    CP  W  G  ++
Sbjct: 170 RGLFIIDSKGTLRQITMNDLPVGRSVDETLRLVQAFQYTDSHGEVCPAGWKPGGDTI 226

Source: Amphioctopus fangsiao

Species: Amphioctopus fangsiao

Genus: Amphioctopus

Family: Octopodidae

Order: Octopoda

Class: Cephalopoda

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|195375271|ref|XP_002046425.1| GJ12891 [Drosophila virilis] gi|194153583|gb|EDW68767.1| GJ12891 [Drosophila virilis]

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 70/114 (61%), Gaps = 5/114 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           ++IA SVDSH  HLAW  T          +   KI PLLSD TH ISK YG YL  +GH+
Sbjct: 117 EVIAASVDSHFTHLAWINT----PRKEGGLGSVKI-PLLSDLTHKISKDYGVYLEESGHA 171

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTG 137
           LR  +IID+RG LR + ++D+ VGR++ E LR V+AFQ  D+    CP  W  G
Sbjct: 172 LRGLFIIDQRGVLRQITMNDLPVGRSVDETLRLVQAFQYTDTHGEVCPAGWKPG 225

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195429068|ref|XP_002062586.1| GK16580 [Drosophila willistoni] gi|194158671|gb|EDW73572.1| GK16580 [Drosophila willistoni]

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 70/114 (61%), Gaps = 5/114 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           ++IA SVDSH  HLAW  T          +   KI PLLSD TH ISK YG YL S+GH+
Sbjct: 121 EVIAASVDSHFTHLAWINT----PRKEGGLGSVKI-PLLSDLTHKISKDYGVYLESSGHA 175

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTG 137
           LR  +IID+ G LR + ++D+ VGR++ E LR V+AFQ  D+    CP  W  G
Sbjct: 176 LRGLFIIDQTGLLRQITMNDLPVGRSVDETLRLVQAFQYTDTHGEVCPAGWKPG 229

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195135294|ref|XP_002012069.1| GI16636 [Drosophila mojavensis] gi|193918333|gb|EDW17200.1| GI16636 [Drosophila mojavensis]

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 71/118 (60%), Gaps = 5/118 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           ++IA SVDSH  HLAW  T          +   KI PLLSD TH ISK YG YL   GH+
Sbjct: 116 EVIAASVDSHFTHLAWINT----PRKEGGLGNVKI-PLLSDLTHKISKDYGVYLEEVGHT 170

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           LR  +IID+RG LR + ++D+ VGR++ E +R V+AFQ  D+    CP  W  G  ++
Sbjct: 171 LRGLFIIDQRGVLRQITMNDLPVGRSVDETIRLVQAFQYTDTHGEVCPAGWKPGSDTI 228

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|359324139|ref|XP_003640292.1| PREDICTED: peroxiredoxin-4-like isoform 3 [Canis lupus familiaris]

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 72/119 (60%), Gaps = 5/119 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A SVDS   HLAW  T       +  + P KI PLLSD TH ISK YG YL  +GH+
Sbjct: 130 EVVACSVDSQFTHLAWINT----PRRQGGLGPIKI-PLLSDLTHQISKDYGVYLEDSGHT 184

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++K
Sbjct: 185 LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDRHGEVCPAGWKPGSETIK 243

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195012352|ref|XP_001983600.1| GH15986 [Drosophila grimshawi] gi|193897082|gb|EDV95948.1| GH15986 [Drosophila grimshawi]

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 73/118 (61%), Gaps = 5/118 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           ++IA SVDSH  HLAW  T          +   KI PLLSD TH ISK YG YL ++GH+
Sbjct: 116 EVIAASVDSHFTHLAWINT----PRKEGGLGNVKI-PLLSDLTHKISKDYGVYLEASGHA 170

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           LR  +IID+RG LR + ++D+ VGR++ E +R V+AFQ  D+    CP  W  G  ++
Sbjct: 171 LRGLFIIDQRGVLRQITMNDLPVGRSVDETIRLVQAFQYTDTHGEVCPAGWKPGADTI 228

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389611229|dbj|BAM19226.1| thioredoxin peroxidase 2 [Papilio polytes]

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 73/119 (61%), Gaps = 7/119 (5%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKI-VPLLSDSTHAISKTYGCYLSSAGH 82
           +++A SVDSH  HLAW  T       R      KI +PLLSD TH+I+K YG YL   GH
Sbjct: 118 EVVACSVDSHFTHLAWINT------PRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDVGH 171

Query: 83  SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           +LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D+    CP  W  GQ ++
Sbjct: 172 TLRGLFIIDDKGILRQITMNDLPVGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQDTI 230

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
FB|FBgn0040308	242	Jafrac2 "thioredoxin peroxidas	0.779	0.466	0.457	2.3e-23
UNIPROTKB|H7C3T4	161	PRDX4 "Peroxiredoxin-4" [Homo	0.786	0.708	0.445	2.3e-23
UNIPROTKB|E2RNL3	272	PRDX4 "Uncharacterized protein	0.779	0.415	0.449	4.8e-23
UNIPROTKB|Q13162	271	PRDX4 "Peroxiredoxin-4" [Homo	0.779	0.416	0.440	7.8e-23
ZFIN|ZDB-GENE-030131-1096	260	prdx4 "peroxiredoxin 4" [Danio	0.779	0.434	0.440	1.3e-22
UNIPROTKB|F1SQ01	272	PRDX4 "Uncharacterized protein	0.779	0.415	0.432	2.6e-22
MGI|MGI:1859815	274	Prdx4 "peroxiredoxin 4" [Mus m	0.779	0.412	0.432	2.6e-22
RGD|620043	273	Prdx4 "peroxiredoxin 4" [Rattu	0.779	0.413	0.432	2.6e-22
UNIPROTKB|F1NNS8	288	PRDX4 "Uncharacterized protein	0.779	0.392	0.440	4.3e-22
MGI|MGI:88034	257	Prdx3 "peroxiredoxin 3" [Mus m	0.786	0.443	0.436	1.5e-21

FB|FBgn0040308 Jafrac2 "thioredoxin peroxidase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 54/118 (45%), Positives = 72/118 (61%)

Query:    24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
             ++I VSVDSH  HLAW  T          +   KI PLLSD TH ISK YG YL S+GH+
Sbjct:   115 EVIGVSVDSHFTHLAWINT----PRKEGGLGDVKI-PLLSDLTHKISKDYGVYLESSGHA 169

Query:    84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
             LR  +IID+ G LR + ++D+ VGR++ E +R V+AFQ  D+    CP  W  G  ++
Sbjct:   170 LRGLFIIDQTGVLRQITMNDLPVGRSVDETIRLVQAFQYTDTHGEVCPAGWRPGADTI 227

GO:0008379 "thioredoxin peroxidase activity" evidence=ISS;IDA;NAS

GO:0016209 "antioxidant activity" evidence=ISS;NAS

GO:0004601 "peroxidase activity" evidence=NAS

GO:0005576 "extracellular region" evidence=IDA;NAS

GO:0042744 "hydrogen peroxide catabolic process" evidence=IDA

GO:0006917 "induction of apoptosis" evidence=IGI;IMP;IPI

GO:0006915 "apoptotic process" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

UNIPROTKB|H7C3T4 PRDX4 "Peroxiredoxin-4" [Homo sapiens (taxid:9606)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 53/119 (44%), Positives = 72/119 (60%)

Query:    24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
             +++A SVDS   HLAW  T       +  + P +I PLLSD TH ISK YG YL  +GH+
Sbjct:    22 EVVACSVDSQFTHLAWINT----PRRQGGLGPIRI-PLLSDLTHQISKDYGVYLEDSGHT 76

Query:    84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
             LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++K
Sbjct:    77 LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETIK 135

GO:0016209 "antioxidant activity" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

UNIPROTKB|E2RNL3 PRDX4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 53/118 (44%), Positives = 71/118 (60%)

Query:    24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
             +++A SVDS   HLAW  T       +  + P KI PLLSD TH ISK YG YL  +GH+
Sbjct:   145 EVVACSVDSQFTHLAWINT----PRRQGGLGPIKI-PLLSDLTHQISKDYGVYLEDSGHT 199

Query:    84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
             LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++
Sbjct:   200 LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDRHGEVCPAGWKPGSETI 257

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

UNIPROTKB|Q13162 PRDX4 "Peroxiredoxin-4" [Homo sapiens (taxid:9606)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 52/118 (44%), Positives = 71/118 (60%)

Query:    24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
             +++A SVDS   HLAW  T       +  + P +I PLLSD TH ISK YG YL  +GH+
Sbjct:   144 EVVACSVDSQFTHLAWINT----PRRQGGLGPIRI-PLLSDLTHQISKDYGVYLEDSGHT 198

Query:    84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
             LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++
Sbjct:   199 LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETI 256

GO:0005615 "extracellular space" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0007252 "I-kappaB phosphorylation" evidence=TAS

GO:0008379 "thioredoxin peroxidase activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-030131-1096 prdx4 "peroxiredoxin 4" [Danio rerio (taxid:7955)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 52/118 (44%), Positives = 70/118 (59%)

Query:    24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
             +++A SVDS   HLAW  T       +  + P KI PLLSD TH ISK YG +L   GH+
Sbjct:   133 EVVACSVDSQFTHLAWINT----PRKQGGLGPMKI-PLLSDLTHQISKDYGVFLEDQGHT 187

Query:    84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
             LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++
Sbjct:   188 LRGLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSDTI 245

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|F1SQ01 PRDX4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 51/118 (43%), Positives = 70/118 (59%)

Query:    24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
             +++A SVDS   HLAW  T       +  + P +I PLLSD  H ISK YG YL  +GH+
Sbjct:   145 EVVACSVDSQFTHLAWINT----PRRQGGLGPIRI-PLLSDLNHQISKDYGVYLEDSGHT 199

Query:    84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
             LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++
Sbjct:   200 LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETI 257

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

MGI|MGI:1859815 Prdx4 "peroxiredoxin 4" [Mus musculus (taxid:10090)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 51/118 (43%), Positives = 70/118 (59%)

Query:    24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
             +++A SVDS   HLAW  T       +  + P +I PLLSD  H ISK YG YL  +GH+
Sbjct:   147 EVVACSVDSQFTHLAWINT----PRRQGGLGPIRI-PLLSDLNHQISKDYGVYLEDSGHT 201

Query:    84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
             LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++
Sbjct:   202 LRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETI 259

GO:0003674 "molecular_function" evidence=ND

GO:0004601 "peroxidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=IDA

RGD|620043 Prdx4 "peroxiredoxin 4" [Rattus norvegicus (taxid:10116)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 51/118 (43%), Positives = 70/118 (59%)

Query:    24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
             +++A SVDS   HLAW  T       +  + P +I PLLSD  H ISK YG YL  +GH+
Sbjct:   146 EVVACSVDSQFTHLAWINT----PRRQGGLGPIRI-PLLSDLNHQISKDYGVYLEDSGHT 200

Query:    84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
             LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++
Sbjct:   201 LRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETI 258

GO:0004601 "peroxidase activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0016209 "antioxidant activity" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA;ISO

UNIPROTKB|F1NNS8 PRDX4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 52/118 (44%), Positives = 69/118 (58%)

Query:    24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
             +++A SVDS   HLAW  T       +  + P KI PLLSD TH ISK YG YL   GH+
Sbjct:   161 EVVACSVDSKFTHLAWINT----PRKQGGLGPMKI-PLLSDLTHQISKDYGVYLEDQGHA 215

Query:    84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
             LR  +IID +  LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++
Sbjct:   216 LRGLFIIDDKRILRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETI 273

GO:0016209 "antioxidant activity" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

MGI|MGI:88034 Prdx3 "peroxiredoxin 3" [Mus musculus (taxid:10090)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 52/119 (43%), Positives = 74/119 (62%)

Query:    24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
             +++AVSVDSH +HLAW  T          +    I  LLSD T  IS+ YG  L SAG +
Sbjct:   129 EVVAVSVDSHFSHLAWINT----PRKNGGLGHMNIT-LLSDITKQISRDYGVLLESAGIA 183

Query:    84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
             LR  +IID  G ++ ++V+D+ VGR+++E LR V+AFQ V++    CP NWT   P++K
Sbjct:   184 LRGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPESPTIK 242

GO:0001893 "maternal placenta development" evidence=IMP

GO:0004601 "peroxidase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005769 "early endosome" evidence=ISO

GO:0006979 "response to oxidative stress" evidence=ISO;IMP

GO:0007005 "mitochondrion organization" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0019900 "kinase binding" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030099 "myeloid cell differentiation" evidence=IMP

GO:0032496 "response to lipopolysaccharide" evidence=IMP

GO:0033673 "negative regulation of kinase activity" evidence=ISO

GO:0034614 "cellular response to reactive oxygen species" evidence=ISO

GO:0042542 "response to hydrogen peroxide" evidence=ISO

GO:0042744 "hydrogen peroxide catabolic process" evidence=ISO

GO:0042802 "identical protein binding" evidence=IPI

GO:0043027 "cysteine-type endopeptidase inhibitor activity involved in apoptotic process" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=ISO

GO:0051881 "regulation of mitochondrial membrane potential" evidence=ISO

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	145
cd03015	173	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family,	7e-38
COG0450	194	COG0450, AhpC, Peroxiredoxin [Posttranslational mo	4e-31
PTZ00253	199	PTZ00253, PTZ00253, tryparedoxin peroxidase; Provi	7e-29
TIGR03137	187	TIGR03137, AhpC, peroxiredoxin	1e-20
PTZ00137	261	PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provision	1e-19
PRK15000	200	PRK15000, PRK15000, peroxidase; Provisional	2e-18
cd02971	140	cd02971, PRX_family, Peroxiredoxin (PRX) family; c	2e-15
cd03016	203	cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-c	3e-15
PRK13191	215	PRK13191, PRK13191, putative peroxiredoxin; Provis	2e-14
pfam00578	124	pfam00578, AhpC-TSA, AhpC/TSA family	4e-13
PRK13190	202	PRK13190, PRK13190, putative peroxiredoxin; Provis	8e-13
PRK13189	222	PRK13189, PRK13189, peroxiredoxin; Provisional	3e-12
PRK10382	187	PRK10382, PRK10382, alkyl hydroperoxide reductase	3e-12
cd03018	149	cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family	6e-11
PRK13599	215	PRK13599, PRK13599, putative peroxiredoxin; Provis	4e-10
COG1225	157	COG1225, Bcp, Peroxiredoxin [Posttranslational mod	7e-05
cd03017	140	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bact	4e-04
pfam10417	40	pfam10417, 1-cysPrx_C, C-terminal domain of 1-Cys	0.004

>gnl|CDD|239313 cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

 Score =  126 bits (319), Expect = 7e-38
 Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 5/114 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++ VS DSH +HLAW  T          +      PLL+D    IS+ YG      G +
Sbjct: 65  EVLGVSTDSHFSHLAWRNT----PRKEGGLGKINF-PLLADPKKKISRDYGVLDEEEGVA 119

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTG 137
           LR  +IID  G +R + V+D+ VGR++ E LR ++A Q V+     CP NW  G
Sbjct: 120 LRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQFVEEHGEVCPANWKPG 173

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure. Length = 173

>gnl|CDD|223527 COG0450, AhpC, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

 Score =  109 bits (275), Expect = 4e-31
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 7/123 (5%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKI-VPLLSDSTHAISKTYGCYLSSAGH 82
           ++I VS DS  +H AW  T+      R A    KI  P+++D    I++ YG      G 
Sbjct: 69  EVIGVSTDSVFSHKAWKATI------REAGGIGKIKFPMIADPKGEIARAYGVLHPEEGL 122

Query: 83  SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           +LR  +IID  G +R + V+ + +GRN+ EILR ++A Q V      CP NW  G  ++K
Sbjct: 123 ALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQFVAKHGEVCPANWKPGDKTIK 182

Query: 143 VAL 145
            + 
Sbjct: 183 PSP 185

Length = 194

>gnl|CDD|140280 PTZ00253, PTZ00253, tryparedoxin peroxidase; Provisional

 Score =  104 bits (260), Expect = 7e-29
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 5/120 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A S+DS  AHL WT         +  +    I P+L+D T +I+++YG      G +
Sbjct: 72  EVLACSMDSEYAHLQWT----LQERKKGGLGTMAI-PMLADKTKSIARSYGVLEEEQGVA 126

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKV 143
            R  +IID +G LR + V+D+ VGRN++E+LR +EAFQ V+     CP NW  G P++K 
Sbjct: 127 YRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQFVEKHGEVCPANWKKGDPTMKP 186

Length = 199

>gnl|CDD|211789 TIGR03137, AhpC, peroxiredoxin

 Score = 82.4 bits (204), Expect = 1e-20
 Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 11/124 (8%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKI-VPLLSDSTHAISKTYGCYLSSAGH 82
           ++ +VS D+H  H AW  T         AI   KI  P+L D T  +++ +G  +  AG 
Sbjct: 67  EVYSVSTDTHFVHKAWHDT-------SEAI--GKITYPMLGDPTGVLTRNFGVLIEEAGL 117

Query: 83  SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQ-CPVNWTTGQPSV 141
           + R  ++ID  G ++++ + D  +GR+  E+LR+++A Q V +   + CP  W  G  ++
Sbjct: 118 ADRGTFVIDPEGVIQAVEIHDNGIGRDASELLRKIKAAQYVAAHPGEVCPAKWKEGAETL 177

Query: 142 KVAL 145
           K +L
Sbjct: 178 KPSL 181

This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 187

>gnl|CDD|173427 PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provisional

 Score = 81.9 bits (202), Expect = 1e-19
 Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 6/119 (5%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++ VSVDS  +H AW +        +  + P K  PL SD +  +SK++G  L   G S
Sbjct: 134 KVLGVSVDSPFSHKAWKEL----DVRQGGVSPLKF-PLFSDISREVSKSFG-LLRDEGFS 187

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
            RA  ++DK G ++ + V D+ +GR++ E LR  +A Q  + T   CPVNW  G  ++K
Sbjct: 188 HRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQFAEKTGNVCPVNWKQGDQAMK 246

Length = 261

>gnl|CDD|184962 PRK15000, PRK15000, peroxidase; Provisional

 Score = 77.0 bits (189), Expect = 2e-18
 Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 5/115 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++ VS DS   H AW  T      ++  I P K   +++D    I K YG      G +
Sbjct: 70  EVVGVSFDSEFVHNAWRNT----PVDKGGIGPVKYA-MVADVKREIQKAYGIEHPDEGVA 124

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQ 138
           LR  ++ID  G +R   V+D+ +GRN+ E+LR V+A Q  +     CP  W  G+
Sbjct: 125 LRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQFHEEHGDVCPAQWEKGK 179

Length = 200

>gnl|CDD|239269 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

 Score = 68.0 bits (167), Expect = 2e-15
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 14/94 (14%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYL---SSA 80
           +++ VSVDS  +H AW +     +            PLLSD     +K YG  +   +  
Sbjct: 58  EVLGVSVDSPFSHKAWAEKEGGLN-----------FPLLSDPDGEFAKAYGVLIEKSAGG 106

Query: 81  GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEIL 114
           G + RA +IID  G +R + V  +  GRN +E+L
Sbjct: 107 GLAARATFIIDPDGKIRYVEVEPLPTGRNAEELL 140

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a cysteine sulfenic acid intermediate. The second step of the reaction, the resolution of the intermediate, distinguishes the different types of PRXs. The presence or absence of a second cysteine (the resolving cysteine) classifies PRXs as either belonging to the 2-cys or 1-cys type. The resolving cysteine of 2-cys PRXs is either on the same chain (atypical) or on the second chain (typical) of a functional homodimer. Structural and motif analysis of this growing family supports the need for a new classification system. The peroxidase activity of PRXs is regulated in vivo by irreversible cysteine over-oxidation into a sulfinic acid, phosphorylation and limited proteolysis. Length = 140

>gnl|CDD|239314 cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

 Score = 68.7 bits (169), Expect = 3e-15
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 8/118 (6%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           ++I +SVDS  +H+ W + +   +            P+++D    ++K  G     AG +
Sbjct: 61  KLIGLSVDSVESHIKWIEDIEEYTGVEIPF------PIIADPDREVAKLLGMIDPDAGST 114

Query: 84  L--RAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQP 139
           L  RA +IID    +R +       GRN  EILR V+A QL D      P NW  G  
Sbjct: 115 LTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQLTDKHKVATPANWKPGDD 172

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins. Length = 203

>gnl|CDD|183885 PRK13191, PRK13191, putative peroxiredoxin; Provisional

 Score = 66.8 bits (163), Expect = 2e-14
 Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 7/112 (6%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYG-CYLSSAGH 82
           ++I +SVDS+++H+ W   +     N     P    P+++D    ++K  G  +  S+  
Sbjct: 69  ELIGLSVDSNISHIEW---VMWIEKNLKVEVP---FPIIADPMGNVAKRLGMIHAESSTA 122

Query: 83  SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNW 134
           ++RA +I+D +G +R +    +++GRN+ EILR + A QLVD      P NW
Sbjct: 123 TVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQLVDKAGVVTPANW 174

Length = 215

>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family

 Score = 61.5 bits (150), Expect = 4e-13
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 12/77 (15%)

Query: 23  FQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGH 82
            +++ VSVDS  +H  + + L                PLLSD    ++K YG      G 
Sbjct: 60  VEVLGVSVDSPESHKKFAEKLGLP------------FPLLSDPDGEVAKAYGVLNEEEGL 107

Query: 83  SLRAYYIIDKRGYLRSM 99
           +LR  ++ID  G +R +
Sbjct: 108 ALRTTFVIDPDGKIRYI 124

This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124

>gnl|CDD|106159 PRK13190, PRK13190, putative peroxiredoxin; Provisional

 Score = 62.6 bits (152), Expect = 8e-13
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 6/118 (5%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++ +SVDS  +H+AW + +      R  I      P+++D    +++ Y     ++G +
Sbjct: 63  ELVGLSVDSIYSHIAWLRDI----EERFGIKIP--FPVIADIDKELAREYNLIDENSGAT 116

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           +R  +IID    +R M     + GRN+ EI+R  +A Q+        P NW  GQ  +
Sbjct: 117 VRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQVNWKRKVATPANWQPGQEGI 174

Length = 202

>gnl|CDD|237297 PRK13189, PRK13189, peroxiredoxin; Provisional

 Score = 61.2 bits (149), Expect = 3e-12
 Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 7/115 (6%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG-H 82
           ++I +S+D   +H+ W + +      +  +      P+++D    I+K  G      G +
Sbjct: 71  ELIGLSIDQVFSHIKWVEWI------KEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTN 124

Query: 83  SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTG 137
           ++RA +IID +G +R++     +VGRN+ EILR V+A Q  D      P NW   
Sbjct: 125 TVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQTSDEKGVATPANWPPN 179

Length = 222

>gnl|CDD|182423 PRK10382, PRK10382, alkyl hydroperoxide reductase subunit C; Provisional

 Score = 60.4 bits (146), Expect = 3e-12
 Identities = 30/123 (24%), Positives = 64/123 (52%), Gaps = 9/123 (7%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
            + +VS D+H  H AW  +    +  + A        ++ D T A+++ +       G +
Sbjct: 67  DVYSVSTDTHFTHKAWHSSSETIAKIKYA--------MIGDPTGALTRNFDNMREDEGLA 118

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQ-CPVNWTTGQPSVK 142
            RA +++D +G ++++ V+   +GR+  ++LR+++A Q V S   + CP  W  G+ ++ 
Sbjct: 119 DRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATLA 178

Query: 143 VAL 145
            +L
Sbjct: 179 PSL 181

Length = 187

>gnl|CDD|239316 cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

 Score = 56.1 bits (136), Expect = 6e-11
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 14/100 (14%)

Query: 22  PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS-TH-AISKTYGCYLSS 79
             +++ +SVDS  +  AW +    T             PLLSD   H  ++K YG +   
Sbjct: 62  GAEVLGISVDSPFSLRAWAEENGLT------------FPLLSDFWPHGEVAKAYGVFDED 109

Query: 80  AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119
            G + RA ++ID+ G +R   VSD    R+L +    ++A
Sbjct: 110 LGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALDA 149

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. Length = 149

>gnl|CDD|106544 PRK13599, PRK13599, putative peroxiredoxin; Provisional

 Score = 55.1 bits (132), Expect = 4e-10
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 7/112 (6%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG-H 82
           ++I +SVD   +H+ W + +     N +   P    P+++D    +S   G      G +
Sbjct: 64  ELIGLSVDQVFSHIKWVEWI---KDNTNIAIP---FPVIADDLGKVSNQLGMIHPGKGTN 117

Query: 83  SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNW 134
           ++RA +I+D +G +R +     +VGRN+ EILR ++A Q  D      P  W
Sbjct: 118 TVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQTADQYGVALPEKW 169

Length = 215

>gnl|CDD|224146 COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 18/80 (22%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGH- 82
            ++ +S DS  +H  + +    T             PLLSD    +++ YG +     + 
Sbjct: 66  VVLGISPDSPKSHKKFAEKHGLT------------FPLLSDEDGEVAEAYGVWGEKKMYG 113

Query: 83  -----SLRAYYIIDKRGYLR 97
                  R+ ++ID  G +R
Sbjct: 114 KEYMGIERSTFVIDPDGKIR 133

Length = 157

>gnl|CDD|239315 cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 15/74 (20%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
            +I VS DS  +H  + +                  PLLSD    ++K YG +       
Sbjct: 59  VVIGVSPDSVESHAKFAEKYGLP------------FPLLSDPDGKLAKAYGVWGEKKKKY 106

Query: 84  L---RAYYIIDKRG 94
           +   R+ ++ID  G
Sbjct: 107 MGIERSTFLIDPDG 120

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth. Length = 140

>gnl|CDD|220741 pfam10417, 1-cysPrx_C, C-terminal domain of 1-Cys peroxiredoxin

 Score = 33.3 bits (77), Expect = 0.004
 Identities = 7/21 (33%), Positives = 7/21 (33%)

Query: 119 AFQLVDSTDTQCPVNWTTGQP 139
           A Q  D      P NW  G  
Sbjct: 1   ALQFTDKHGVVTPANWKPGDK 21

This is the C-terminal domain of 1-Cys peroxiredoxin (1-cysPrx), a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine, upstream of this domain; and glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulfide to the sulfhydryl and consequent activation of the enzyme. The domain is associated with family AhpC-TSA, pfam00578, which carries the catalytic cysteine. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	100.0
PRK15000	200	peroxidase; Provisional	100.0
KOG0852|consensus	196		100.0
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	100.0
PRK13191	215	putative peroxiredoxin; Provisional	100.0
PRK13190	202	putative peroxiredoxin; Provisional	100.0
PTZ00137	261	2-Cys peroxiredoxin; Provisional	100.0
PRK13189	222	peroxiredoxin; Provisional	100.0
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	100.0
PRK13599	215	putative peroxiredoxin; Provisional	99.98
PTZ00253	199	tryparedoxin peroxidase; Provisional	99.97
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.97
KOG0854|consensus	224		99.96
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.95
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	99.93
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	99.79
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.79
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.76
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.73
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.71
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.69
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.69
KOG0855|consensus	211		99.68
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.67
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.67
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.66
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.63
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.57
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.48
PLN02412	167	probable glutathione peroxidase	99.48
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.45
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.44
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.44
PTZ00256	183	glutathione peroxidase; Provisional	99.43
PTZ00056	199	glutathione peroxidase; Provisional	99.37
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.36
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.35
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	99.31
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.3
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.26
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.23
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.22
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.19
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.13
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.13
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	99.08
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.07
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.01
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	98.93
PRK13728	181	conjugal transfer protein TrbB; Provisional	98.92
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	98.89
COG0678	165	AHP1 Peroxiredoxin [Posttranslational modification	98.87
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	98.84
KOG0541|consensus	171		98.74
PRK10606	183	btuE putative glutathione peroxidase; Provisional	98.73
PF13911	115	AhpC-TSA_2: AhpC/TSA antioxidant enzyme	98.72
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	98.67
PF10417	40	1-cysPrx_C: C-terminal domain of 1-Cys peroxiredox	98.63
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	97.79
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	97.61
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	97.53
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	97.45
PF09695	160	YtfJ_HI0045: Bacterial protein of unknown function	97.33
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	97.31
PF05988	211	DUF899: Bacterial protein of unknown function (DUF	97.25
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	97.1
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	97.07
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	96.97
PF13728	215	TraF: F plasmid transfer operon protein	96.76
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	96.43
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	95.97
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	95.82
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	95.66
COG3054	184	Predicted transcriptional regulator [General funct	95.53
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	95.33
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	95.32
PRK09381	109	trxA thioredoxin; Provisional	95.31
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	95.16
PF05176	252	ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th	94.91
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	94.83
KOG4498|consensus	197		94.75
KOG2501|consensus	157		94.44
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	94.11
KOG1651|consensus	171		93.73
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	93.73
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	93.46
COG4312	247	Uncharacterized protein conserved in bacteria [Fun	93.3
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	93.06
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	92.79
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	92.58
KOG2792|consensus	280		91.74
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	91.62
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	91.44
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	91.38
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	91.35
PRK10996	139	thioredoxin 2; Provisional	90.27
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	90.21
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	90.09
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	89.76
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	89.69
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	89.22
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	89.2
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	88.68
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	88.41
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	88.34
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	87.29
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	86.96
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	86.54
KOG0910|consensus	150		84.47
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	83.8
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	83.79
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	83.71
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	81.62
TIGR03765	105	ICE_PFL_4695 integrating conjugative element prote	81.4
KOG0907|consensus	106		81.07
PHA02278	103	thioredoxin-like protein	81.05
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	80.48

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-40  Score=252.15  Aligned_cols=138  Identities=30%  Similarity=0.528  Sum_probs=132.5

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|++|+-+|+++|  ++|+++|++|||||+|+.++|.+|.+.+++..  |+.++   +|||++|.++++++.||+..++.
T Consensus        48 VCpTEi~af~~~y--~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~--gi~~i---~~PmiaD~~~~vs~~ygvl~~~~  120 (194)
T COG0450          48 VCPTEIIAFAKRY--EEFQKRGVEVIGVSTDSVFSHKAWKATIREAG--GIGKI---KFPMIADPKGEIARAYGVLHPEE  120 (194)
T ss_pred             cCcchHHHHHhhh--HHHHHcCCEEEEEecCcHHHHHHHHhcHHhcC--Cccce---ecceEEcCchhHHHHcCCcccCC
Confidence            4999999999999  79999999999999999999999999988776  88778   99999999999999999999888


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccCC
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVAL  145 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~~  145 (145)
                      |.+.|++|||||+|+|++..+++.++||+.+|+++.|++||++++|+++||+||++|+++|+|++
T Consensus       121 g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq~~~~hg~vcPanW~~G~~~i~p~~  185 (194)
T COG0450         121 GLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQFVAKHGEVCPANWKPGDKTIKPSP  185 (194)
T ss_pred             CcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHHHHHHhCCCccCCCCCCCccccCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999874

>PRK15000 peroxidase; Provisional

Probab=100.00  E-value=1.5e-34  Score=222.37  Aligned_cols=137  Identities=27%  Similarity=0.469  Sum_probs=125.3

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      -|+.|++.|++++  ++|+++|++|||||.|+++++++|.+...+..  |+..+   +||+++|+++++++.||+..+..
T Consensus        49 vC~~El~~l~~~~--~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~--g~~~i---~fpllsD~~~~ia~~ygv~~~~~  121 (200)
T PRK15000         49 VCPSELIAFDKRY--EEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKG--GIGPV---KYAMVADVKREIQKAYGIEHPDE  121 (200)
T ss_pred             CCHHHHHHHHHHH--HHHHHCCCEEEEEECCCHHHHHHHHhhHHHhC--Ccccc---CceEEECCCcHHHHHcCCccCCC
Confidence            3999999999999  69999999999999999999999987543433  44347   89999999999999999987667


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                      |.+.|++||||++|+|++.++++.+.+|+++|++++|+++|++++|+++||+||++|+++|+|.
T Consensus       122 g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~~~~~~~~~~p~~w~~g~~~~~~~  185 (200)
T PRK15000        122 GVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQFHEEHGDVCPAQWEKGKEGMNAS  185 (200)
T ss_pred             CcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhHHhcCCCcCCCCCCCCceeccC
Confidence            8889999999999999999999999999999999999999999999999999999999999985

>KOG0852|consensus

Probab=100.00  E-value=1.1e-34  Score=216.38  Aligned_cols=137  Identities=32%  Similarity=0.547  Sum_probs=131.5

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|-.|.-+|.+.+  ++|++.|.+|||+|+|++++|.+|+..-++.+  |++.+   .+|||+|.++++++.||+..++.
T Consensus        48 VcPteIiafSd~~--~eF~~~n~eVig~S~DS~fshlAW~ntprk~g--Glg~~---~iPllsD~~~~IsrdyGvL~~~~  120 (196)
T KOG0852|consen   48 VCPTEIIAFSDRA--PEFRKLNTEVLGISTDSVFSHLAWINTPRKQG--GLGPL---NIPLLSDLNHEISRDYGVLKEDE  120 (196)
T ss_pred             ECchhhhhhhhhH--HHHHhcCCeEEEEeccchhhhhhHhcCchhhC--CcCcc---ccceeeccchhhHHhcCceecCC
Confidence            3889999999999  69999999999999999999999999888887  88778   89999999999999999999999


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                      |.+.|+.||||++|.+|...+++.++||+++|+++.|+++|++++|+++||++|++|+++|+|.
T Consensus       121 G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAfQ~td~~geVcPagW~pgs~tikp~  184 (196)
T KOG0852|consen  121 GIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAFQFTDEHGEVCPAGWKPGSDTIKPD  184 (196)
T ss_pred             CcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHHhhhhccCccccCCCCCCCcccCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999985

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=100.00  E-value=1.4e-33  Score=215.25  Aligned_cols=134  Identities=25%  Similarity=0.456  Sum_probs=121.8

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|+.|++.|++++  ++|+++|++|||||.|+++.+++|++..+..     .++   +||+|+|++++++++||+..+..
T Consensus        46 ~C~~el~~l~~~~--~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~-----~~l---~fpllsD~~~~ia~~ygv~~~~~  115 (187)
T PRK10382         46 VCPTELGDVADHY--EELQKLGVDVYSVSTDTHFTHKAWHSSSETI-----AKI---KYAMIGDPTGALTRNFDNMREDE  115 (187)
T ss_pred             cCHHHHHHHHHHH--HHHHhCCCEEEEEeCCCHHHHHHHHHhhccc-----cCC---ceeEEEcCchHHHHHcCCCcccC
Confidence            4999999999999  6999999999999999999999999863221     128   99999999999999999986555


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccC-CcccCCCCCCCCCccccC
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDST-DTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~-~~~~p~~w~~~~~~~~~~  144 (145)
                      |.+.|++||||++|+|++.++.+...+++.+|+++.|+++|++++| ++.||+||++|+++|.|.
T Consensus       116 g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~~~~~~g~~~p~~w~~~~~~~~~~  180 (187)
T PRK10382        116 GLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATLAPS  180 (187)
T ss_pred             CceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhhHhhcCCeEeCCCCCcCCcceecC
Confidence            7778999999999999999999888899999999999999999999 699999999999999875

>PRK13191 putative peroxiredoxin; Provisional

Probab=100.00  E-value=2e-33  Score=218.39  Aligned_cols=136  Identities=27%  Similarity=0.471  Sum_probs=122.5

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|+.|++.|++++  ++|+++|++|||||+|+.++|++|.+.+++..  +. .+   +||+++|++++++++||+.....
T Consensus        48 vC~tEl~~l~~~~--~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~--~~-~i---~fPllsD~~~~ia~~ygv~~~~~  119 (215)
T PRK13191         48 VCTTEFYSFAKKY--EEFKKLNTELIGLSVDSNISHIEWVMWIEKNL--KV-EV---PFPIIADPMGNVAKRLGMIHAES  119 (215)
T ss_pred             cCHHHHHHHHHHH--HHHHHCCCEEEEEECCCHHHHHHHHhhHHHhc--CC-CC---ceEEEECCchHHHHHcCCccccc
Confidence            4999999999999  79999999999999999999999988765422  22 27   89999999999999999976432


Q ss_pred             -CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCC----CCCccccC
Q psy17183         81 -GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTT----GQPSVKVA  144 (145)
Q Consensus        81 -g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~----~~~~~~~~  144 (145)
                       +.+.|++||||++|+|++.++++.+.+|+++|+|+.|++||.+++|+++||+||++    |+++|+|+
T Consensus       120 ~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq~~~~~~~~~P~~w~~~~~~g~~~~~~~  188 (215)
T PRK13191        120 STATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQLVDKAGVVTPANWPNNELIGDKVINPA  188 (215)
T ss_pred             CCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhhhhcCCCcCCCCCCCCCCCCceecCC
Confidence             55789999999999999999999999999999999999999999999999999997    99999975

>PRK13190 putative peroxiredoxin; Provisional

Probab=100.00  E-value=5.5e-33  Score=213.77  Aligned_cols=136  Identities=24%  Similarity=0.375  Sum_probs=123.2

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|+.|++.|++++  ++|+++|++|||||.|+.+++++|++.+.+..  |+ .+   +||+++|++++++++||+.....
T Consensus        42 ~C~~El~~l~~~~--~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~--g~-~~---~fPll~D~~~~ia~~ygv~~~~~  113 (202)
T PRK13190         42 VCTTEFIAFSRRY--EDFKKLGVELVGLSVDSIYSHIAWLRDIEERF--GI-KI---PFPVIADIDKELAREYNLIDENS  113 (202)
T ss_pred             CCHHHHHHHHHHH--HHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhc--CC-Cc---eEEEEECCChHHHHHcCCccccC
Confidence            4999999999999  69999999999999999999999987654332  32 27   89999999999999999976556


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                      |.+.|++||||++|+|++...++...+|+.+|+++.|+++|.+++|+++||+||++|+++|+|+
T Consensus       114 g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~~~~~~~~~p~~w~~g~~~~~~~  177 (202)
T PRK13190        114 GATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQVNWKRKVATPANWQPGQEGIVPA  177 (202)
T ss_pred             CcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHHhcCCCcCCCCCcCCceecCC
Confidence            7678999999999999999999988899999999999999999999999999999999999964

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=100.00  E-value=5.9e-33  Score=221.09  Aligned_cols=136  Identities=29%  Similarity=0.476  Sum_probs=121.9

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|+.|++.|++++  ++|+++|++|+|||.|+++++++|++...+.+  |...+   +||+++|++++++++||+... .
T Consensus       113 vCt~El~~l~~~~--~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~--g~~~l---~fPlLsD~~~~iakayGv~~~-~  184 (261)
T PTZ00137        113 VCPSELLGFSERL--KEFEERGVKVLGVSVDSPFSHKAWKELDVRQG--GVSPL---KFPLFSDISREVSKSFGLLRD-E  184 (261)
T ss_pred             CCHHHHHHHHHHH--HHHHHCCCEEEEEECCCHHHHHHHHhhhhhhc--cccCc---ceEEEEcCChHHHHHcCCCCc-C
Confidence            3999999999999  69999999999999999999999987422221  22238   899999999999999999753 4


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                      |.+.|++||||++|+|++.++++.+.+|+++|++++|++||++++|+++||+||++|+++|+|.
T Consensus       185 g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq~~~~~g~~cPanW~~g~~~~~~~  248 (261)
T PTZ00137        185 GFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQFAEKTGNVCPVNWKQGDQAMKPD  248 (261)
T ss_pred             CceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhchhhhcCCCcCCCCCcCCceecCC
Confidence            7789999999999999999999989999999999999999999999999999999999999974

>PRK13189 peroxiredoxin; Provisional

Probab=100.00  E-value=2.4e-32  Score=213.23  Aligned_cols=136  Identities=25%  Similarity=0.402  Sum_probs=122.3

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|+.|++.|++++  ++|+++|++|||||+|+.+++++|.+.+.+..  |. .+   +||+++|.+++++++||+.....
T Consensus        50 vC~tEl~~l~~~~--~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~--g~-~i---~fPllsD~~~~ia~~ygv~~~~~  121 (222)
T PRK13189         50 VCTTEFVAFQKRY--DEFRELNTELIGLSIDQVFSHIKWVEWIKEKL--GV-EI---EFPIIADDRGEIAKKLGMISPGK  121 (222)
T ss_pred             CCHHHHHHHHHHH--HHHHHcCCEEEEEECCCHHHHHHHHHhHHHhc--Cc-Cc---ceeEEEcCccHHHHHhCCCcccc
Confidence            4999999999999  69999999999999999999999998765432  22 27   89999999999999999975432


Q ss_pred             -CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCC----CccccC
Q psy17183         81 -GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQ----PSVKVA  144 (145)
Q Consensus        81 -g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~----~~~~~~  144 (145)
                       +.+.|++||||++|+|++.++++.+.+|+.+|+++.|+++|..++|+++||+||++|+    ++|+|+
T Consensus       122 ~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq~~~~~~~~~p~~w~~g~~~~~~~~~~~  190 (222)
T PRK13189        122 GTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQTSDEKGVATPANWPPNDLIKDKVIVPP  190 (222)
T ss_pred             CCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhHhhcCcCcCCCCCCCCCCCCceeeCC
Confidence             3478999999999999999999998999999999999999999999999999999999    999975

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=100.00  E-value=3.3e-32  Score=209.42  Aligned_cols=136  Identities=26%  Similarity=0.406  Sum_probs=122.4

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC-
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS-   79 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~-   79 (145)
                      .|+.|++.|++++  ++|+++|++|||||.|+.+++++|.+.+++..  + ..+   +||+++|++++++++||+.... 
T Consensus        40 ~C~~el~~l~~~~--~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~--~-~~~---~fpil~D~~~~ia~~yg~~~~~~  111 (203)
T cd03016          40 VCTTELGAFAKLA--PEFKKRNVKLIGLSVDSVESHIKWIEDIEEYT--G-VEI---PFPIIADPDREVAKLLGMIDPDA  111 (203)
T ss_pred             cCHHHHHHHHHHH--HHHHHcCCEEEEEECCCHHHHHHHHhhHHHhc--C-CCC---ceeEEECchHHHHHHcCCccccC
Confidence            4999999999999  69999999999999999999999998776542  1 128   9999999999999999998643 


Q ss_pred             -CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         80 -AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        80 -~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                       .+.+.|++||||++|+|++.++++.+.+|+.+|++++|+++|..++++.+||+||.+|+++|+|+
T Consensus       112 ~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq~~~~~~~~~p~~w~~g~~~~~~~  177 (203)
T cd03016         112 GSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQLTDKHKVATPANWKPGDDVIVPP  177 (203)
T ss_pred             CCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhHhhcCcCcCCCCCCCCceecCC
Confidence             23467999999999999999999988899999999999999999999999999999999999964

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK13599 putative peroxiredoxin; Provisional

Probab=99.98  E-value=8e-32  Score=209.43  Aligned_cols=136  Identities=23%  Similarity=0.394  Sum_probs=121.5

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      -||.|++.|++++  ++|+++|++|||||.|+.+++++|.+.+++..  +. ++   +||+++|.+++++++||+..+..
T Consensus        43 vCt~El~~l~~~~--~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~--~~-~i---~fPil~D~~~~va~~yg~~~~~~  114 (215)
T PRK13599         43 VCTTEFVEFARKA--NDFKELNTELIGLSVDQVFSHIKWVEWIKDNT--NI-AI---PFPVIADDLGKVSNQLGMIHPGK  114 (215)
T ss_pred             cCHHHHHHHHHHH--HHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhc--CC-CC---ceeEEECCCchHHHHcCCCccCC
Confidence            3999999999999  79999999999999999999999988765431  11 28   89999999999999999976543


Q ss_pred             CC-cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCC----CCCccccC
Q psy17183         81 GH-SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTT----GQPSVKVA  144 (145)
Q Consensus        81 g~-~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~----~~~~~~~~  144 (145)
                      |. +.|++||||++|+|+++++++...+|+.+|++++|++||.+++++.+||+||.+    |+++|+|+
T Consensus       115 ~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~~~~~~~~~p~~w~~~~~~g~~~~~~~  183 (215)
T PRK13599        115 GTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQTADQYGVALPEKWPNNYLIKDHVIVPP  183 (215)
T ss_pred             CCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhhhhhcCCCcCCCCCCCCCCCCcEEEcC
Confidence            32 689999999999999999988888999999999999999999999999999999    99999964

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=99.97  E-value=5e-31  Score=202.08  Aligned_cols=137  Identities=34%  Similarity=0.609  Sum_probs=122.4

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      -|+.|++.|++++  ++|+++|++|||||.|+.+++.+|....+..+  |...+   +||+++|+++++++.||+.....
T Consensus        51 ~C~~e~~~l~~~~--~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~--~~~~~---~fpll~D~~~~ia~~ygv~~~~~  123 (199)
T PTZ00253         51 VCPTEIIQFSDSV--KRFNELNCEVLACSMDSEYAHLQWTLQERKKG--GLGTM---AIPMLADKTKSIARSYGVLEEEQ  123 (199)
T ss_pred             cCHHHHHHHHHHH--HHHHHcCCEEEEEeCCCHHHHHHHHhChHhhC--Ccccc---ccceEECcHhHHHHHcCCcccCC
Confidence            3999999999999  69999999999999999999999965432222  22237   89999999999999999987656


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                      |.+.|++||||++|+|++.++++.+.+|+.+|+++.|+++|..++++++||+||++|+++|+|.
T Consensus       124 g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~~~~~~~~~cp~~w~~g~~~~~~~  187 (199)
T PTZ00253        124 GVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQFVEKHGEVCPANWKKGDPTMKPD  187 (199)
T ss_pred             CceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhhhHHhcCCEeCCCCCcCCccccCC
Confidence            7778999999999999999999888999999999999999999999999999999999999974

>TIGR03137 AhpC peroxiredoxin

Probab=99.97  E-value=2.1e-29  Score=191.51  Aligned_cols=135  Identities=27%  Similarity=0.512  Sum_probs=121.1

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|+.|++.|++++  ++|++.|++||+||.|+++.+++|++..+...     .+   +||+++|+++++++.||+.....
T Consensus        46 ~C~~el~~l~~~~--~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~-----~l---~fpllsD~~~~~a~~~gv~~~~~  115 (187)
T TIGR03137        46 VCPTELEDLADKY--AELKKLGVEVYSVSTDTHFVHKAWHDTSEAIG-----KI---TYPMLGDPTGVLTRNFGVLIEEA  115 (187)
T ss_pred             cCHHHHHHHHHHH--HHHHhcCCcEEEEeCCCHHHHHHHHhhhhhcc-----Cc---ceeEEECCccHHHHHhCCcccCC
Confidence            4999999999999  69999999999999999999999988632221     28   89999999999999999986555


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccC-CcccCCCCCCCCCccccCC
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDST-DTQCPVNWTTGQPSVKVAL  145 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~-~~~~p~~w~~~~~~~~~~~  145 (145)
                      |...|++||||++|+|++.+++..+.+++.+++++.|+++|++++| ++.||+||.+|.+++.|.+
T Consensus       116 g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (187)
T TIGR03137       116 GLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAAQYVAAHPGEVCPAKWKEGAETLKPSL  181 (187)
T ss_pred             CceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHHhcCCeeeCCCCCcCCccccCCh
Confidence            6678999999999999999998877788999999999999999999 7999999999999998764

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>KOG0854|consensus

Probab=99.96  E-value=3.8e-28  Score=181.95  Aligned_cols=139  Identities=24%  Similarity=0.387  Sum_probs=124.2

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC-
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS-   79 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~-   79 (145)
                      .||.|+..++++.  .+|..+|+..||+|+|+.++|+.|.+.|..++..--..+   +||++.|++.++|-.|||.+++ 
T Consensus        47 VCTTElgr~Akl~--pEF~KRnvKlialS~d~vesH~~Wi~DIks~~~~~~~~~---~yPIIaD~~rela~~l~MlD~~e  121 (224)
T KOG0854|consen   47 VCTTELGRFAKLA--PEFDKRNVKLIALSVDDVESHKDWIKDIKSYAKVKNHSV---PYPIIADPNRELAFLLNMLDPEE  121 (224)
T ss_pred             chhHHHHHHHhhC--hhhhhcCceEEEeehhhHHHHHHHHHHHHHHHhccCCCC---CCCeecCCchhhhhhhcccCHhH
Confidence            4999999999998  799999999999999999999999999855431110117   8999999999999999998754 


Q ss_pred             -----CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         80 -----AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        80 -----~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                           -|.+.|+.||||++.+|+.++.++.++||+++|+|++|.+||.++++..++|+||++|+++++++
T Consensus       122 ~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ttGRN~dEiLRvidsLqlt~~k~VaTP~nWkpg~~vmilP  191 (224)
T KOG0854|consen  122 KKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTTGRNFDEILRVIDSLQLTDKKGVATPVNWKPGDKVMILP  191 (224)
T ss_pred             cCCCCCCceEEEEEEECCCceEEEEEEcccccCcCHHHHHHHHHHHhhhcccccccccccCCCCceEEcC
Confidence                 25689999999999999999999999999999999999999999999999999999999999853

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.95  E-value=1.7e-27  Score=178.30  Aligned_cols=130  Identities=33%  Similarity=0.561  Sum_probs=114.2

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|+.|++.|++++  ++|.+.|++|++||.|+.+.+.+|.+...+..  +...+   +||+++|..++++++||+.....
T Consensus        44 ~C~~~l~~l~~~~--~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~--~~~~~---~f~~l~D~~~~~~~~~gv~~~~~  116 (173)
T cd03015          44 VCPTEIIAFSDRY--EEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEG--GLGKI---NFPLLADPKKKISRDYGVLDEEE  116 (173)
T ss_pred             cCHHHHHHHHHHH--HHHHHCCCEEEEEecCCHHHHHHHHHhhhhhC--CccCc---ceeEEECCchhHHHHhCCccccC
Confidence            4999999999999  69999999999999999888888987643210  11127   89999999999999999986655


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCC
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTG  137 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~  137 (145)
                      |.+.|++||||++|+|++.+++..+.+++.+++++.|+.++...+|+++||+||++|
T Consensus       117 ~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~  173 (173)
T cd03015         117 GVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQFVEEHGEVCPANWKPG  173 (173)
T ss_pred             CceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhhhhcCCCcCCCCCCC
Confidence            667899999999999999999887778899999999999999999999999999987

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.7e-25  Score=166.04  Aligned_cols=105  Identities=24%  Similarity=0.352  Sum_probs=94.5

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC-
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA-   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~-   80 (145)
                      ||.|+|+|++++  ++|+..|++|||||+|+++++++|+++   ++      +   +||||||.+++|+++||+..... 
T Consensus        46 CT~Ea~~Frd~~--~ef~~~~a~V~GIS~Ds~~~~~~F~~k---~~------L---~f~LLSD~~~~v~~~ygv~~~k~~  111 (157)
T COG1225          46 CTTEACDFRDLL--EEFEKLGAVVLGISPDSPKSHKKFAEK---HG------L---TFPLLSDEDGEVAEAYGVWGEKKM  111 (157)
T ss_pred             chHHHHHHHHHH--HHHHhCCCEEEEEeCCCHHHHHHHHHH---hC------C---CceeeECCcHHHHHHhCccccccc
Confidence            999999999999  699999999999999999999999997   87      9   99999999999999999987532 


Q ss_pred             -----CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         81 -----GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        81 -----g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                           ..+.|+|||||++|+|++.| .......|.+++++.|+++.
T Consensus       112 ~gk~~~~~~R~TfvId~dG~I~~~~-~~v~~~~h~~~vl~~l~~l~  156 (157)
T COG1225         112 YGKEYMGIERSTFVIDPDGKIRYVW-RKVKVKGHADEVLAALKKLA  156 (157)
T ss_pred             CccccccccceEEEECCCCeEEEEe-cCCCCcccHHHHHHHHHHhc
Confidence                 13799999999999999999 34455668999999998875

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=99.79  E-value=1.3e-18  Score=128.87  Aligned_cols=95  Identities=22%  Similarity=0.277  Sum_probs=81.3

Q ss_pred             ChhHH-HHHHHHHhhhhhhhcCCc-EEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCcc
Q psy17183          1 MDTKI-ACDVLKLVRKEILIVSPF-QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLS   78 (145)
Q Consensus         1 ~~t~e-~~~~~~~~~~~~f~~~gv-~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~   78 (145)
                      .||.| ++.|++.+  ++|+++|+ .|+|||.|+++++++|+++   ++   +. .   +||+|||++++++++||+...
T Consensus        44 ~Ct~e~~~~~~~~~--~~f~~~g~~~V~~iS~D~~~~~~~~~~~---~~---~~-~---~f~lLsD~~~~~~~~ygv~~~  111 (155)
T cd03013          44 TCSAQHLPGYVENA--DELKAKGVDEVICVSVNDPFVMKAWGKA---LG---AK-D---KIRFLADGNGEFTKALGLTLD  111 (155)
T ss_pred             CCchhHHHHHHHhH--HHHHHCCCCEEEEEECCCHHHHHHHHHh---hC---CC-C---cEEEEECCCHHHHHHcCCCcc
Confidence            49999 99999999  79999999 6999999999999999997   43   10 3   699999999999999999765


Q ss_pred             CC--CC---cceEEEEECCCCcEEEEEeecCCCCC
Q psy17183         79 SA--GH---SLRAYYIIDKRGYLRSMNVSDIQVGR  108 (145)
Q Consensus        79 ~~--g~---~~p~tfIID~dG~I~~~~~~~~~~~~  108 (145)
                      ..  |+   +.|++|||| +|+|+++++...+.+.
T Consensus       112 ~~~~~~~~~~~R~~fiId-~g~I~~~~~~~~~~~~  145 (155)
T cd03013         112 LSAAGGGIRSKRYALIVD-DGKVKYLFVEEDPGDV  145 (155)
T ss_pred             ccccCCcceeeeEEEEEC-CCEEEEEEEecCCCCc
Confidence            42  33   689999999 7999999998876443

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.79  E-value=2.7e-18  Score=128.27  Aligned_cols=102  Identities=18%  Similarity=0.191  Sum_probs=86.9

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCC-ccEEec-CchHHHHHhCCCccC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKI-VPLLSD-STHAISKTYGCYLSS   79 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-fpllsD-~~~~va~~yg~~~~~   79 (145)
                      |+.|+|.|++++  ++|.  |++|+|||.|+++++++|+++   ++      +   + ||+++| ..+++++.||+....
T Consensus        60 C~~e~~~l~~~~--~~~~--~~~vv~vs~D~~~~~~~f~~~---~~------~---~~~~~lsD~~~~~~~~~~gv~~~~  123 (167)
T PRK00522         60 CATSVRKFNQEA--AELD--NTVVLCISADLPFAQKRFCGA---EG------L---ENVITLSDFRDHSFGKAYGVAIAE  123 (167)
T ss_pred             cHHHHHHHHHHH--HHcC--CcEEEEEeCCCHHHHHHHHHh---CC------C---CCceEeecCCccHHHHHhCCeecc
Confidence            999999999999  5773  899999999999999999986   65      6   5 799999 466999999997532


Q ss_pred             ---CCCcceEEEEECCCCcEEEEEeecC-CCCCCHHHHHHHHHh
Q psy17183         80 ---AGHSLRAYYIIDKRGYLRSMNVSDI-QVGRNLKEILRQVEA  119 (145)
Q Consensus        80 ---~g~~~p~tfIID~dG~I~~~~~~~~-~~~~~~~ell~~i~~  119 (145)
                         .|...|++||||++|+|++.++++. ....+.++++++|++
T Consensus       124 ~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~~  167 (167)
T PRK00522        124 GPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALKA  167 (167)
T ss_pred             cccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhhC
Confidence               5778899999999999999998653 445689999988763

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.76  E-value=1.7e-17  Score=120.04  Aligned_cols=105  Identities=30%  Similarity=0.449  Sum_probs=91.5

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCc--hHHHHHhCCCcc
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDST--HAISKTYGCYLS   78 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~--~~va~~yg~~~~   78 (145)
                      .|+.+++.|++++  ++|++.|+++|+||.|+++.+++|+++   ++      +   +||+++|.+  +++++.||+...
T Consensus        43 ~C~~~~~~l~~~~--~~~~~~~v~vi~vs~d~~~~~~~~~~~---~~------~---~~~~~~D~~~~~~~~~~~g~~~~  108 (149)
T cd03018          43 VCTKELCALRDSL--ELFEAAGAEVLGISVDSPFSLRAWAEE---NG------L---TFPLLSDFWPHGEVAKAYGVFDE  108 (149)
T ss_pred             cHHHHHHHHHHHH--HHHHhCCCEEEEecCCCHHHHHHHHHh---cC------C---CceEecCCCchhHHHHHhCCccc
Confidence            3999999999999  699999999999999999999999886   66      8   999999988  999999999854


Q ss_pred             CCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         79 SAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        79 ~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      ..|...|++||||++|+|++.+.++....++..++.+.|++
T Consensus       109 ~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~  149 (149)
T cd03018         109 DLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALDA  149 (149)
T ss_pred             cCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhhC
Confidence            33556789999999999999999987666777888877753

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.73  E-value=6.4e-17  Score=116.76  Aligned_cols=100  Identities=22%  Similarity=0.291  Sum_probs=84.0

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCc-hHHHHHhCCCccC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDST-HAISKTYGCYLSS   79 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~-~~va~~yg~~~~~   79 (145)
                      .|+.|++.|++++  ++|+  |+.||+||.|+.+++++|.++   ++     ..   +||+++|.. ++++++||+..+.
T Consensus        41 ~C~~e~~~l~~~~--~~~~--~~~vi~Is~d~~~~~~~~~~~---~~-----~~---~~~~l~D~~~~~~~~~~gv~~~~  105 (143)
T cd03014          41 VCATQTKRFNKEA--AKLD--NTVVLTISADLPFAQKRWCGA---EG-----VD---NVTTLSDFRDHSFGKAYGVLIKD  105 (143)
T ss_pred             cCHHHHHHHHHHH--HhcC--CCEEEEEECCCHHHHHHHHHh---cC-----CC---CceEeecCcccHHHHHhCCeecc
Confidence            3999999999999  5674  899999999999999999886   43     13   699999996 9999999998766


Q ss_pred             CCCcceEEEEECCCCcEEEEEeecCC-CCCCHHHHHH
Q psy17183         80 AGHSLRAYYIIDKRGYLRSMNVSDIQ-VGRNLKEILR  115 (145)
Q Consensus        80 ~g~~~p~tfIID~dG~I~~~~~~~~~-~~~~~~ell~  115 (145)
                      .|.+.|++||||++|+|++.+++... ..++++++++
T Consensus       106 ~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~~  142 (143)
T cd03014         106 LGLLARAVFVIDENGKVIYVELVPEITDEPDYEAALA  142 (143)
T ss_pred             CCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHhh
Confidence            67778999999999999999997643 3456777664

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.71  E-value=1.4e-16  Score=113.98  Aligned_cols=99  Identities=27%  Similarity=0.277  Sum_probs=85.7

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC-
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS-   79 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~-   79 (145)
                      .|+.+++.|++++  ++|++.|++||+||.|+++..++|+++   ++      +   +||+++|.++++++.||+.... 
T Consensus        38 ~C~~~~~~l~~~~--~~~~~~~~~vv~is~d~~~~~~~~~~~---~~------~---~~~~l~D~~~~~~~~~gv~~~~~  103 (140)
T cd03017          38 GCTKEACDFRDLY--EEFKALGAVVIGVSPDSVESHAKFAEK---YG------L---PFPLLSDPDGKLAKAYGVWGEKK  103 (140)
T ss_pred             chHHHHHHHHHHH--HHHHHCCCEEEEEcCCCHHHHHHHHHH---hC------C---CceEEECCccHHHHHhCCccccc
Confidence            4999999999999  689999999999999999999999886   66      8   9999999999999999987531 


Q ss_pred             --CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHH
Q psy17183         80 --AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEIL  114 (145)
Q Consensus        80 --~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell  114 (145)
                        .+...|++||||++|+|++.+.|.. .+++++|++
T Consensus       104 ~~~~~~~p~~~lid~~G~v~~~~~g~~-~~~~~~~~~  139 (140)
T cd03017         104 KKYMGIERSTFLIDPDGKIVKVWRKVK-PKGHAEEVL  139 (140)
T ss_pred             cccCCcceeEEEECCCCEEEEEEecCC-ccchHHHHh
Confidence              2234599999999999999998876 567777765

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.69  E-value=3.8e-16  Score=114.26  Aligned_cols=103  Identities=17%  Similarity=0.221  Sum_probs=86.3

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|+.+++.|++++  ++|++.|+++|+||.|+.+.+++|+++   ++      +   +||+++|.++.++++||+.....
T Consensus        45 ~C~~~~~~l~~~~--~~~~~~~v~vi~Is~d~~~~~~~~~~~---~~------~---~~~~l~D~~~~~~~~~gv~~~~~  110 (154)
T PRK09437         45 GCTVQACGLRDNM--DELKKAGVVVLGISTDKPEKLSRFAEK---EL------L---NFTLLSDEDHQVAEQFGVWGEKK  110 (154)
T ss_pred             chHHHHHHHHHHH--HHHHHCCCEEEEEcCCCHHHHHHHHHH---hC------C---CCeEEECCCchHHHHhCCCcccc
Confidence            3999999999999  689999999999999999999999886   66      8   99999999999999999864211


Q ss_pred             --C----CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHH
Q psy17183         81 --G----HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE  118 (145)
Q Consensus        81 --g----~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~  118 (145)
                        |    ...|++||||++|+|++.+.+..+ .++.++++++++
T Consensus       111 ~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~-~~~~~~~~~~~~  153 (154)
T PRK09437        111 FMGKTYDGIHRISFLIDADGKIEHVFDKFKT-SNHHDVVLDYLK  153 (154)
T ss_pred             cccccccCcceEEEEECCCCEEEEEEcCCCc-chhHHHHHHHHh
Confidence              1    124889999999999999987643 456777877764

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.69  E-value=2.9e-16  Score=112.97  Aligned_cols=88  Identities=19%  Similarity=0.196  Sum_probs=77.3

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC-
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS-   79 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~-   79 (145)
                      .|+.|++.|++++  ++|+..|++||+||.|+.+.+.+|.+.   ++      +   +||+++|++++++++||+.... 
T Consensus        38 ~C~~~~~~l~~~~--~~~~~~~v~vv~V~~~~~~~~~~~~~~---~~------~---~~p~~~D~~~~~~~~~g~~~~~~  103 (149)
T cd02970          38 FCREYLRALSKLL--PELDALGVELVAVGPESPEKLEAFDKG---KF------L---PFPVYADPDRKLYRALGLVRSLP  103 (149)
T ss_pred             hHHHHHHHHHHHH--HHHHhcCeEEEEEeCCCHHHHHHHHHh---cC------C---CCeEEECCchhHHHHcCceecCc
Confidence            4999999999999  699999999999999999888888875   66      8   9999999999999999996322 


Q ss_pred             ----------------------CCCcceEEEEECCCCcEEEEEee
Q psy17183         80 ----------------------AGHSLRAYYIIDKRGYLRSMNVS  102 (145)
Q Consensus        80 ----------------------~g~~~p~tfIID~dG~I~~~~~~  102 (145)
                                            .+...|++||||++|+|++.+++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~  148 (149)
T cd02970         104 WSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD  148 (149)
T ss_pred             HHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence                                  12468999999999999999875

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>KOG0855|consensus

Probab=99.68  E-value=1.7e-16  Score=118.41  Aligned_cols=104  Identities=25%  Similarity=0.273  Sum_probs=90.8

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCc-cCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYL-SSA   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~-~~~   80 (145)
                      ||+|.|.|+++|  ++|+..|++|+|+|.|+..++++|+.+   .+      +   ||.||||+.+++.+.+|+.. +..
T Consensus       106 CTkQaCgFRDnY--~k~kka~aeV~GlS~D~s~sqKaF~sK---qn------l---PYhLLSDpk~e~ik~lGa~k~p~g  171 (211)
T KOG0855|consen  106 CTKQACGFRDNY--EKFKKAGAEVIGLSGDDSASQKAFASK---QN------L---PYHLLSDPKNEVIKDLGAPKDPFG  171 (211)
T ss_pred             cccccccccccH--HHHhhcCceEEeeccCchHHHHHhhhh---cc------C---CeeeecCcchhHHHHhCCCCCCCC
Confidence            999999999999  799999999999999999999999987   66      9   99999999999999999986 345


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      |.+.|++||+|+.|..............++++.++.|.+
T Consensus       172 g~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~k~~~~  210 (211)
T KOG0855|consen  172 GLPGRSHYIFDKGGVKQLIKNNQISPEVSVDEALKFLKA  210 (211)
T ss_pred             CcccceEEEEecCCeEEEEEecccCccccHHHHHHHHhc
Confidence            678999999999887776665556666678888887754

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.67  E-value=1.4e-15  Score=113.21  Aligned_cols=113  Identities=17%  Similarity=0.237  Sum_probs=91.0

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCC--------HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHh
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDS--------HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTY   73 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~--------~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~y   73 (145)
                      |..+++.|.+++  ++|++.++++|+||.|+        ++..++|+++   ++      +   +||+++|.++.+++.|
T Consensus        40 c~~~~~~l~~l~--~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~---~~------~---~~~~l~D~~~~~~~~~  105 (171)
T cd02969          40 VKAIEDRLNRLA--KEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKE---HG------Y---PFPYLLDETQEVAKAY  105 (171)
T ss_pred             HHHHHHHHHHHH--HHHhhCCeEEEEEecCccccccccCHHHHHHHHHH---CC------C---CceEEECCchHHHHHc
Confidence            788999999999  68988999999999865        5666777775   66      8   8999999999999999


Q ss_pred             CCCccCCCCcceEEEEECCCCcEEEEEeecCCC-----CCCHHHHHHHHHhccccccCC------cccCCCC
Q psy17183         74 GCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQV-----GRNLKEILRQVEAFQLVDSTD------TQCPVNW  134 (145)
Q Consensus        74 g~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~-----~~~~~ell~~i~~l~~~~~~~------~~~p~~w  134 (145)
                      |+..      .|++||||++|+|++........     ..+..++.++|+++.....-+      .+|+++|
T Consensus       106 ~v~~------~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~  171 (171)
T cd02969         106 GAAC------TPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVPQTPSIGCSIKW  171 (171)
T ss_pred             CCCc------CCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCccccCCCCcccCC
Confidence            9973      69999999999999886433221     124678888888887654442      6799998

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.67  E-value=1.1e-15  Score=109.19  Aligned_cols=96  Identities=33%  Similarity=0.537  Sum_probs=82.4

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhc-CCCCCCCCCCCCccEEecCchHHHHHhCCCccC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTAT-SSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS   79 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~   79 (145)
                      .|..+++.|++++  ++|+..|+++|+||.|+++.+++|+++   + .      .   +||+++|+++.++++||+....
T Consensus        37 ~C~~~~~~l~~~~--~~~~~~~~~~i~is~d~~~~~~~~~~~---~~~------~---~~~~l~D~~~~~~~~~g~~~~~  102 (140)
T cd02971          37 VCTTELCAFRDLA--EEFAKGGAEVLGVSVDSPFSHKAWAEK---EGG------L---NFPLLSDPDGEFAKAYGVLIEK  102 (140)
T ss_pred             cCHHHHHHHHHHH--HHHHHCCCEEEEEeCCCHHHHHHHHhc---ccC------C---CceEEECCChHHHHHcCCcccc
Confidence            4999999999999  689888999999999999999999886   6 4      7   8999999999999999988532


Q ss_pred             C---CCcceEEEEECCCCcEEEEEeecCCCCCCH
Q psy17183         80 A---GHSLRAYYIIDKRGYLRSMNVSDIQVGRNL  110 (145)
Q Consensus        80 ~---g~~~p~tfIID~dG~I~~~~~~~~~~~~~~  110 (145)
                      .   +...|++||||++|+|++.+.+..+.....
T Consensus       103 ~~~~~~~~p~~~lid~~g~i~~~~~~~~~~~~~~  136 (140)
T cd02971         103 SAGGGLAARATFIIDPDGKIRYVEVEPLPTGRNA  136 (140)
T ss_pred             ccccCceeEEEEEECCCCcEEEEEecCCCCCcCh
Confidence            1   345789999999999999999987633333

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.66  E-value=8.2e-16  Score=107.60  Aligned_cols=85  Identities=20%  Similarity=0.220  Sum_probs=76.5

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|+.+++.|++++  ++|+.+|+++++||.|+.+.+++|.+.   ++      +   +||+++|.++++++.||+.....
T Consensus        40 ~c~~~l~~l~~~~--~~~~~~~~~vi~is~d~~~~~~~~~~~---~~------~---~~~~~~D~~~~~~~~~~~~~~~~  105 (124)
T PF00578_consen   40 FCQAELPELNELY--KKYKDKGVQVIGISTDDPEEIKQFLEE---YG------L---PFPVLSDPDGELAKAFGIEDEKD  105 (124)
T ss_dssp             HHHHHHHHHHHHH--HHHHTTTEEEEEEESSSHHHHHHHHHH---HT------C---SSEEEEETTSHHHHHTTCEETTT
T ss_pred             ccccchhHHHHHh--hhhccceEEeeecccccccchhhhhhh---hc------c---ccccccCcchHHHHHcCCccccC
Confidence            3999999999999  699999999999999999999999997   65      8   99999999999999999985433


Q ss_pred             CCcceEEEEECCCCcEEEE
Q psy17183         81 GHSLRAYYIIDKRGYLRSM   99 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~   99 (145)
                      ....|++||||++|+|+|.
T Consensus       106 ~~~~p~~~lid~~g~I~~~  124 (124)
T PF00578_consen  106 TLALPAVFLIDPDGKIRYA  124 (124)
T ss_dssp             SEESEEEEEEETTSBEEEE
T ss_pred             CceEeEEEEECCCCEEEeC
Confidence            3468999999999999985

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.63  E-value=3.1e-15  Score=106.24  Aligned_cols=83  Identities=17%  Similarity=0.139  Sum_probs=74.3

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeC------CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSV------DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYG   74 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~------D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg   74 (145)
                      .|..++|.|++++  ++|+..|+.||+|+.      ++++..++|+++   ++      +   +||+++|+++++++.||
T Consensus        37 ~C~~~~p~l~~l~--~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~---~~------~---~~p~~~D~~~~~~~~~~  102 (126)
T cd03012          37 NCLHTLPYLTDLE--QKYKDDGLVVIGVHSPEFAFERDLANVKSAVLR---YG------I---TYPVANDNDYATWRAYG  102 (126)
T ss_pred             cHHHHHHHHHHHH--HHcCcCCeEEEEeccCccccccCHHHHHHHHHH---cC------C---CCCEEECCchHHHHHhC
Confidence            4899999999999  699999999999986      457788888886   76      8   99999999999999999


Q ss_pred             CCccCCCCcceEEEEECCCCcEEEEEeec
Q psy17183         75 CYLSSAGHSLRAYYIIDKRGYLRSMNVSD  103 (145)
Q Consensus        75 ~~~~~~g~~~p~tfIID~dG~I~~~~~~~  103 (145)
                      +.      ..|++||||++|+|++++.|+
T Consensus       103 v~------~~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012         103 NQ------YWPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             CC------cCCeEEEECCCCcEEEEEecC
Confidence            86      369999999999999999875

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.57  E-value=2.1e-14  Score=103.73  Aligned_cols=91  Identities=22%  Similarity=0.214  Sum_probs=77.8

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC-
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS-   79 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~-   79 (145)
                      .|..|+|.+.+++  +.|+..|+.+++|+.++.....+|.++   ++      +   +||++.|.+++++++||+.... 
T Consensus        43 ~C~~~~p~l~~l~--~~~~~~~v~~v~v~~~~~~~~~~~~~~---~~------~---~~~~~~D~~~~~~~~~~~~~~~~  108 (146)
T PF08534_consen   43 PCRKELPYLNELQ--EKYKDKGVDVVGVSSDDDPPVREFLKK---YG------I---NFPVLSDPDGALAKALGVTIMED  108 (146)
T ss_dssp             HHHHHHHHHHHHH--HHHHTTTCEEEEEEESSSHHHHHHHHH---TT------T---TSEEEEETTSHHHHHTTCEEECC
T ss_pred             cchhhhhhHHhhh--hhhccCceEEEEecccCCHHHHHHHHh---hC------C---CceEEechHHHHHHHhCCccccc
Confidence            3999999999998  588999999999998766668888886   65      7   9999999999999999986321 


Q ss_pred             --CCCcceEEEEECCCCcEEEEEeecCC
Q psy17183         80 --AGHSLRAYYIIDKRGYLRSMNVSDIQ  105 (145)
Q Consensus        80 --~g~~~p~tfIID~dG~I~~~~~~~~~  105 (145)
                        .|...|++||||++|+|++.+.+..+
T Consensus       109 ~~~~~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen  109 PGNGFGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             TTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred             cccCCeecEEEEEECCCEEEEEEeCCCC
Confidence              23468999999999999999999865

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.48  E-value=1.3e-13  Score=101.17  Aligned_cols=91  Identities=12%  Similarity=0.081  Sum_probs=68.8

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeC--------CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC--chH-HH
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSV--------DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS--THA-IS   70 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~--------D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~--~~~-va   70 (145)
                      |+.|+|.|++++  ++|+.+|++|||||.        ++++.+++|+++  +++      +   +||+++|.  ++. .+
T Consensus        36 C~~e~p~l~~l~--~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~--~~~------~---~fp~~~d~d~~~~~~~  102 (152)
T cd00340          36 FTPQYEGLEALY--EKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCET--NYG------V---TFPMFAKIDVNGENAH  102 (152)
T ss_pred             chHHHHHHHHHH--HHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHH--hcC------C---CceeeeeEeccCCCCC
Confidence            899999999999  689999999999986        346788999874  145      8   89999874  444 56


Q ss_pred             HHhCCCccCC-C------CcceEEEEECCCCcEEEEEeecCC
Q psy17183         71 KTYGCYLSSA-G------HSLRAYYIIDKRGYLRSMNVSDIQ  105 (145)
Q Consensus        71 ~~yg~~~~~~-g------~~~p~tfIID~dG~I~~~~~~~~~  105 (145)
                      +.|+...... +      ...|++||||++|+|++.+.|..+
T Consensus       103 ~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~  144 (152)
T cd00340         103 PLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTD  144 (152)
T ss_pred             hHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCC
Confidence            6676421100 0      013489999999999999998753

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PLN02412 probable glutathione peroxidase

Probab=99.48  E-value=3.5e-13  Score=100.69  Aligned_cols=101  Identities=11%  Similarity=0.094  Sum_probs=74.8

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHH-HHHHHHHhhcCCCCCCCCCCCCccEEec--Cch-HH
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAH-LAWTKTLTATSSNRSAIDPSKIVPLLSD--STH-AI   69 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~fpllsD--~~~-~v   69 (145)
                      |..|+|.|++++  ++|+.+|+.|||||.|        +.+.. +.|+++   ++      +   +||+++|  .++ ..
T Consensus        44 c~~e~~~l~~l~--~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~---~~------~---~fpvl~~~d~~g~~~  109 (167)
T PLN02412         44 TDSNYKELNVLY--EKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTR---FK------A---EFPIFDKVDVNGKNT  109 (167)
T ss_pred             hHHHHHHHHHHH--HHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHc---cC------C---CCceEeEEeeCCCCC
Confidence            777999999999  6999999999999964        44443 444554   66      8   9999984  554 77


Q ss_pred             HHHhCCCccCC------CC-cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         70 SKTYGCYLSSA------GH-SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        70 a~~yg~~~~~~------g~-~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +..|+......      +. ..|++||||++|+|++.+.|..+    .+++.+.|+++
T Consensus       110 ~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~----~~~l~~~i~~~  163 (167)
T PLN02412        110 APLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTS----PLKIEKDIQNL  163 (167)
T ss_pred             CHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCC----HHHHHHHHHHH
Confidence            88787432110      11 26999999999999999988753    56677777665

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.45  E-value=1.2e-12  Score=99.17  Aligned_cols=91  Identities=14%  Similarity=0.267  Sum_probs=73.5

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeC-CCHHHHHHHHHHHhhcCCCCCCCCCCCCcc-EEecCchHHHHHhCCCccC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSV-DSHLAHLAWTKTLTATSSNRSAIDPSKIVP-LLSDSTHAISKTYGCYLSS   79 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~fp-llsD~~~~va~~yg~~~~~   79 (145)
                      |..|+|.+.++.      ++|++||+||. |+.+.+++|.++   ++      +   +|| +++|.++.+++.||+.   
T Consensus        83 C~~e~p~l~~l~------~~~~~vi~v~~~~~~~~~~~~~~~---~~------~---~~~~~~~D~~~~~~~~~gv~---  141 (185)
T PRK15412         83 CRAEHQYLNQLS------AQGIRVVGMNYKDDRQKAISWLKE---LG------N---PYALSLFDGDGMLGLDLGVY---  141 (185)
T ss_pred             HHHHHHHHHHHH------HcCCEEEEEECCCCHHHHHHHHHH---cC------C---CCceEEEcCCccHHHhcCCC---
Confidence            899999987765      34899999997 467778899886   66      7   899 4889999999999987   


Q ss_pred             CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         80 AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        80 ~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                         ..|++||||++|+|++.+.|+.+    .+++.+.|+.+
T Consensus       142 ---~~P~t~vid~~G~i~~~~~G~~~----~~~l~~~i~~~  175 (185)
T PRK15412        142 ---GAPETFLIDGNGIIRYRHAGDLN----PRVWESEIKPL  175 (185)
T ss_pred             ---cCCeEEEECCCceEEEEEecCCC----HHHHHHHHHHH
Confidence               37999999999999999999864    34444444443

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.44  E-value=4.8e-13  Score=98.06  Aligned_cols=101  Identities=15%  Similarity=0.115  Sum_probs=74.7

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeC--------CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC-----chH
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSV--------DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS-----THA   68 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~--------D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~-----~~~   68 (145)
                      |..|+|.+++++  ++|+.+|+.|+|||.        |+++.+++|+++  +++      +   +||+++|.     ...
T Consensus        37 c~~~~~~l~~l~--~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~--~~~------~---~fp~~~d~~~~~~~~~  103 (153)
T TIGR02540        37 TDQNYRALQELH--RELGPSHFNVLAFPCNQFGESEPDSSKEIESFARR--NYG------V---TFPMFSKIKILGSEAE  103 (153)
T ss_pred             hhhhHHHHHHHH--HHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHH--hcC------C---CCCccceEecCCCCCC
Confidence            889999999999  699999999999984        678889999874  155      8   99999872     333


Q ss_pred             HHHHhCCCccCCCC--cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         69 ISKTYGCYLSSAGH--SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        69 va~~yg~~~~~~g~--~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .+..|.+... .+.  -.+++||||++|+|++.+.+..    +.+++.+.|++|
T Consensus       104 ~~~~~~~~~~-~~~p~~~~~tflID~~G~v~~~~~g~~----~~~~l~~~i~~l  152 (153)
T TIGR02540       104 PAFRFLVDSS-KKEPRWNFWKYLVNPEGQVVKFWRPEE----PVEEIRPEITAL  152 (153)
T ss_pred             cHHHHHHhcC-CCCCCCccEEEEEcCCCcEEEEECCCC----CHHHHHHHHHHh
Confidence            3444543211 111  1345999999999999998874    357777777664

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.44  E-value=2.4e-12  Score=95.16  Aligned_cols=97  Identities=21%  Similarity=0.241  Sum_probs=82.3

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCC-CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVD-SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS   79 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~   79 (145)
                      .|+.+++.|.+++  ++|...++++++|+.| +.+..++|.++   ++      +   +||++.|.++++++.||+.   
T Consensus        75 ~C~~~~~~l~~~~--~~~~~~~~~vi~i~~d~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~v~---  137 (173)
T PRK03147         75 PCEKEMPYMNELY--PKYKEKGVEIIAVNVDETELAVKNFVNR---YG------L---TFPVAIDKGRQVIDAYGVG---  137 (173)
T ss_pred             HHHHHHHHHHHHH--HHhhcCCeEEEEEEcCCCHHHHHHHHHH---hC------C---CceEEECCcchHHHHcCCC---
Confidence            4899999999999  6899889999999987 45667888875   76      8   9999999999999999987   


Q ss_pred             CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         80 AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        80 ~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                         ..|++||||++|+|++.+.|..+    .+++.+.+++++
T Consensus       138 ---~~P~~~lid~~g~i~~~~~g~~~----~~~l~~~l~~~~  172 (173)
T PRK03147        138 ---PLPTTFLIDKDGKVVKVITGEMT----EEQLEEYLEKIK  172 (173)
T ss_pred             ---CcCeEEEECCCCcEEEEEeCCCC----HHHHHHHHHHhc
Confidence               37999999999999998877643    567777777665

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.43  E-value=7.1e-13  Score=100.30  Aligned_cols=103  Identities=12%  Similarity=0.171  Sum_probs=71.2

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEec--CchHH-
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSD--STHAI-   69 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD--~~~~v-   69 (145)
                      .|..|+|.|++++  ++|+.+|+.|||||.|        +.+...+|..+  +++      +   +||+++|  .++.. 
T Consensus        55 ~C~~e~p~l~~l~--~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~--~~~------~---~fpv~~d~d~~g~~~  121 (183)
T PTZ00256         55 LTSDHYTQLVELY--KQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQK--KFN------V---DFPLFQKIEVNGENT  121 (183)
T ss_pred             chHHHHHHHHHHH--HHHhhCCcEEEEEecccccccCCCCHHHHHHHHHH--hcC------C---CCCCceEEecCCCCC
Confidence            4999999999999  6999999999999964        34566777542  255      8   9999976  55544 


Q ss_pred             HHHhCCCccC-----------CCC-cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         70 SKTYGCYLSS-----------AGH-SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        70 a~~yg~~~~~-----------~g~-~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      ++.|+.....           .++ ..+++||||++|+|++.+.+...    .+++.+.|+++
T Consensus       122 ~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~----~~~l~~~I~~l  180 (183)
T PTZ00256        122 HEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVN----PNEMIQDIEKL  180 (183)
T ss_pred             CHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCC----HHHHHHHHHHH
Confidence            3444211100           011 13468999999999999988653    44555555544

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.37  E-value=5e-12  Score=97.19  Aligned_cols=102  Identities=9%  Similarity=0.047  Sum_probs=73.0

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeC--------CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC------ch
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSV--------DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS------TH   67 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~--------D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~------~~   67 (145)
                      |..|+|.|++++  ++|+.+|++|||||.        |+++.+++|+++   ++      +   +||+++|.      .+
T Consensus        54 C~~e~p~L~~l~--~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~---~~------~---~fpvl~d~~v~g~~~~  119 (199)
T PTZ00056         54 TKKHVDQMNRLH--SVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDK---NK------I---KYNFFEPIEVNGENTH  119 (199)
T ss_pred             hHHHHHHHHHHH--HHHhcCceEEEEecchhccCCCCCCHHHHHHHHHH---cC------C---CceeeeeeeccCCccC
Confidence            899999999999  689999999999986        577889999886   76      8   99999872      23


Q ss_pred             HHH--------HHhCCCccCCCC-cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         68 AIS--------KTYGCYLSSAGH-SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        68 ~va--------~~yg~~~~~~g~-~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .+.        ..|+......+. ..|++||||++|+|++.+.+...    .+++.+.|+.+.
T Consensus       120 ~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~----~~~l~~~I~~ll  178 (199)
T PTZ00056        120 ELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTE----PLELEKKIAELL  178 (199)
T ss_pred             HHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCC----HHHHHHHHHHHH
Confidence            333        234332110111 13589999999999998877542    455555555543

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.36  E-value=6.1e-12  Score=99.26  Aligned_cols=103  Identities=17%  Similarity=0.199  Sum_probs=75.5

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeC--------CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEe--cCch-HHH
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSV--------DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLS--DSTH-AIS   70 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~--------D~~~~~~~~~~~~~~~~~~~~~~~~~~~fplls--D~~~-~va   70 (145)
                      |..|++.|++++  ++|+.+|++||||+.        ++.+.+++|+.+  +++      +   +||++.  |.+| .++
T Consensus       114 c~~e~p~L~~L~--~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~--~~g------~---~fPvl~~~D~~G~~~~  180 (236)
T PLN02399        114 TSSNYSELSHLY--EKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACT--RFK------A---EFPIFDKVDVNGPSTA  180 (236)
T ss_pred             hHHHHHHHHHHH--HHHhcCCcEEEEEecccccccCCCCHHHHHHHHHH--hcC------C---CCccccccCCCcchhh
Confidence            889999999999  699999999999996        456678888732  265      8   999996  4555 555


Q ss_pred             HHhCCCccCC----C---CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         71 KTYGCYLSSA----G---HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        71 ~~yg~~~~~~----g---~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      ..|+......    |   ...|++||||++|+|++.+.|..    +.+++.+.|+++.
T Consensus       181 ~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~----~~~~le~~I~~lL  234 (236)
T PLN02399        181 PVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTT----SPFQIEKDIQKLL  234 (236)
T ss_pred             HHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCC----CHHHHHHHHHHHh
Confidence            6665321000    1   12589999999999999998764    3567777776653

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.35  E-value=1.5e-11  Score=92.07  Aligned_cols=90  Identities=12%  Similarity=0.140  Sum_probs=71.6

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC-CHHHHHHHHHHHhhcCCCCCCCCCCCCcc-EEecCchHHHHHhCCCccC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD-SHLAHLAWTKTLTATSSNRSAIDPSKIVP-LLSDSTHAISKTYGCYLSS   79 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~fp-llsD~~~~va~~yg~~~~~   79 (145)
                      |..++|.+.+++      +.|++||+||.+ +.+.+++|.++   ++      +   +|| ++.|+.+++++.|++.   
T Consensus        78 C~~~~p~l~~l~------~~~~~vi~V~~~~~~~~~~~~~~~---~~------~---~f~~v~~D~~~~~~~~~~v~---  136 (173)
T TIGR00385        78 CRAEHPYLNELA------KDGLPIVGVDYKDQSQNALKFLKE---LG------N---PYQAILIDPNGKLGLDLGVY---  136 (173)
T ss_pred             HHHHHHHHHHHH------HcCCEEEEEECCCChHHHHHHHHH---cC------C---CCceEEECCCCchHHhcCCe---
Confidence            888888887765      347999999975 55667788876   66      7   898 6789999999999987   


Q ss_pred             CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         80 AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        80 ~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                         ..|++|+||++|+|++.+.|..+    .+++.+.|++
T Consensus       137 ---~~P~~~~id~~G~i~~~~~G~~~----~~~l~~~l~~  169 (173)
T TIGR00385       137 ---GAPETFLVDGNGVILYRHAGPLN----NEVWTEGFLP  169 (173)
T ss_pred             ---eCCeEEEEcCCceEEEEEeccCC----HHHHHHHHHH
Confidence               36999999999999999998753    4555555543

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=99.31  E-value=1.5e-11  Score=88.02  Aligned_cols=87  Identities=20%  Similarity=0.220  Sum_probs=70.5

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCC---cEEEEEeCC----CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCc---hHHH
Q psy17183          1 MDTKIACDVLKLVRKEILIVSP---FQIIAVSVD----SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDST---HAIS   70 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~g---v~vi~VS~D----~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~---~~va   70 (145)
                      .|..+++.|++++  ++|.+++   +++++||.|    +++.+++|+++   ++      .   +||+++|..   +.++
T Consensus        37 ~C~~~l~~l~~~~--~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~---~~------~---~~~~l~~~~~~~~~~~  102 (142)
T cd02968          37 VCPTTLANLAQAL--KQLGADGGDDVQVVFISVDPERDTPEVLKAYAKA---FG------P---GWIGLTGTPEEIEALA  102 (142)
T ss_pred             cCHHHHHHHHHHH--HHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHH---hC------C---CcEEEECCHHHHHHHH
Confidence            4999999999999  6898875   999999975    46778888886   65      6   899999975   8999


Q ss_pred             HHhCCCccCC-------CC-cceEEEEECCCCcEEEEEe
Q psy17183         71 KTYGCYLSSA-------GH-SLRAYYIIDKRGYLRSMNV  101 (145)
Q Consensus        71 ~~yg~~~~~~-------g~-~~p~tfIID~dG~I~~~~~  101 (145)
                      +.||+.....       ++ ..|++||||++|+|++.+.
T Consensus       103 ~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~  141 (142)
T cd02968         103 KAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYG  141 (142)
T ss_pred             HHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeec
Confidence            9999874311       11 2578999999999998764

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.30  E-value=3.7e-11  Score=84.86  Aligned_cols=81  Identities=17%  Similarity=0.248  Sum_probs=68.7

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeC-CCHHHHHHHHHHHhhcCCCCCCCCCCCCcc-EEecCchHHHHHhCCCccC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSV-DSHLAHLAWTKTLTATSSNRSAIDPSKIVP-LLSDSTHAISKTYGCYLSS   79 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~fp-llsD~~~~va~~yg~~~~~   79 (145)
                      |..+++.+.++.  +++   +++||+|+. ++.+.+++|+++   ++      +   +|+ +++|.++++++.||+.   
T Consensus        40 C~~~~~~l~~l~--~~~---~~~vv~v~~~~~~~~~~~~~~~---~~------~---~~~~~~~D~~~~~~~~~~v~---   99 (127)
T cd03010          40 CREEHPVLMALA--RQG---RVPIYGINYKDNPENALAWLAR---HG------N---PYAAVGFDPDGRVGIDLGVY---   99 (127)
T ss_pred             HHHHHHHHHHHH--Hhc---CcEEEEEECCCCHHHHHHHHHh---cC------C---CCceEEECCcchHHHhcCCC---
Confidence            889999999876  343   599999996 678888999886   65      7   786 6799999999999998   


Q ss_pred             CCCcceEEEEECCCCcEEEEEeecCC
Q psy17183         80 AGHSLRAYYIIDKRGYLRSMNVSDIQ  105 (145)
Q Consensus        80 ~g~~~p~tfIID~dG~I~~~~~~~~~  105 (145)
                         ..|++||||++|+|++.+.|..+
T Consensus       100 ---~~P~~~~ld~~G~v~~~~~G~~~  122 (127)
T cd03010         100 ---GVPETFLIDGDGIIRYKHVGPLT  122 (127)
T ss_pred             ---CCCeEEEECCCceEEEEEeccCC
Confidence               37999999999999999998754

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.26  E-value=7.7e-11  Score=79.47  Aligned_cols=82  Identities=23%  Similarity=0.318  Sum_probs=71.7

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCC--HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCcc
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDS--HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLS   78 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~--~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~   78 (145)
                      .|...++.|.++.  ++|...++.+++|+.|+  ++..++|.+.   ++      .   +|+++.|...++++.||+.  
T Consensus        33 ~C~~~~~~l~~~~--~~~~~~~~~~~~v~~d~~~~~~~~~~~~~---~~------~---~~~~~~~~~~~~~~~~~~~--   96 (116)
T cd02966          33 PCRAEMPELEALA--KEYKDDGVEVVGVNVDDDDPAAVKAFLKK---YG------I---TFPVLLDPDGELAKAYGVR--   96 (116)
T ss_pred             hHHHHhHHHHHHH--HHhCCCCeEEEEEECCCCCHHHHHHHHHH---cC------C---CcceEEcCcchHHHhcCcC--
Confidence            3888999999988  57877899999999997  7888888886   65      7   9999999999999999987  


Q ss_pred             CCCCcceEEEEECCCCcEEEEEee
Q psy17183         79 SAGHSLRAYYIIDKRGYLRSMNVS  102 (145)
Q Consensus        79 ~~g~~~p~tfIID~dG~I~~~~~~  102 (145)
                          ..|++||+|++|+|++.+.|
T Consensus        97 ----~~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          97 ----GLPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             ----ccceEEEECCCCcEEEEecC
Confidence                37999999999999987653

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.23  E-value=6.7e-11  Score=87.16  Aligned_cols=79  Identities=11%  Similarity=0.148  Sum_probs=62.4

Q ss_pred             ChhHHHHHHHHHhhhhhhhc-------CCcEEEEEeCCC-HHHHHHHHHHHhhcCCCCCCCCCCCCc---cEEecCchHH
Q psy17183          1 MDTKIACDVLKLVRKEILIV-------SPFQIIAVSVDS-HLAHLAWTKTLTATSSNRSAIDPSKIV---PLLSDSTHAI   69 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~-------~gv~vi~VS~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~f---pllsD~~~~v   69 (145)
                      .|..|+|.|.++|  +++++       ++++||+||.|. .+..++|.++   .+      +   +|   |+..+..+.+
T Consensus        39 pCr~e~P~L~~ly--~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~---~~------~---~~~~~p~~~~~~~~l  104 (146)
T cd03008          39 QCQLFAPKLKDFF--VRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKD---MP------K---KWLFLPFEDEFRREL  104 (146)
T ss_pred             hHHHHHHHHHHHH--HHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHH---CC------C---CceeecccchHHHHH
Confidence            4999999999998  46654       379999999984 4557788776   54      4   45   4445556799


Q ss_pred             HHHhCCCccCCCCcceEEEEECCCCcEEEE
Q psy17183         70 SKTYGCYLSSAGHSLRAYYIIDKRGYLRSM   99 (145)
Q Consensus        70 a~~yg~~~~~~g~~~p~tfIID~dG~I~~~   99 (145)
                      ++.||+.      .+|++||||++|+|+..
T Consensus       105 ~~~y~v~------~iPt~vlId~~G~Vv~~  128 (146)
T cd03008         105 EAQFSVE------ELPTVVVLKPDGDVLAA  128 (146)
T ss_pred             HHHcCCC------CCCEEEEECCCCcEEee
Confidence            9999987      47999999999999866

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.22  E-value=9.1e-11  Score=89.25  Aligned_cols=92  Identities=12%  Similarity=0.114  Sum_probs=70.5

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|..++|.+++.++     ..++.+++||.|+++.+++|+++   ++      +   +|+.+. .++++++.||+.    
T Consensus        88 ~C~~~lp~l~~~~~-----~~~~~vv~Is~~~~~~~~~~~~~---~~------~---~~~~~~-~~~~i~~~y~v~----  145 (189)
T TIGR02661        88 VCDKLFPIIKSIAR-----AEETDVVMISDGTPAEHRRFLKD---HE------L---GGERYV-VSAEIGMAFQVG----  145 (189)
T ss_pred             hHHHHHHHHHHHHH-----hcCCcEEEEeCCCHHHHHHHHHh---cC------C---Ccceee-chhHHHHhccCC----
Confidence            38999999999872     24788999999999999999986   66      7   777654 578999999987    


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHH
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE  118 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~  118 (145)
                        ..|++||||++|+|++..  ..+..+++++++++++
T Consensus       146 --~~P~~~lID~~G~I~~~g--~~~~~~~le~ll~~l~  179 (189)
T TIGR02661       146 --KIPYGVLLDQDGKIRAKG--LTNTREHLESLLEADR  179 (189)
T ss_pred             --ccceEEEECCCCeEEEcc--CCCCHHHHHHHHHHHH
Confidence              379999999999999863  3233334555555543

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.19  E-value=1e-10  Score=89.18  Aligned_cols=97  Identities=12%  Similarity=0.204  Sum_probs=69.5

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEE------EEEeCCC-HHHHHHHHHH-HhhcCCCCCCCCCCCCcc---EEecCchHHH
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQI------IAVSVDS-HLAHLAWTKT-LTATSSNRSAIDPSKIVP---LLSDSTHAIS   70 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~v------i~VS~D~-~~~~~~~~~~-~~~~~~~~~~~~~~~~fp---llsD~~~~va   70 (145)
                      |..|+|.+.++      +++|+.+      ++||.|+ ......|.+. +++.+      .   .||   ++.|.++.++
T Consensus        74 c~~e~P~l~~l------~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~------~---~~P~~~vllD~~g~v~  138 (184)
T TIGR01626        74 KEXNASLIDAI------KAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGK------K---ENPWSQVVLDDKGAVK  138 (184)
T ss_pred             hhccchHHHHH------HHcCCCcccccceEEEECccchhhHHHHHHHHHHHhc------c---cCCcceEEECCcchHH
Confidence            78888888776      3456666      9999985 3344444332 12244      6   788   9999999999


Q ss_pred             HHhCCCccCCCCcceEE-EEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         71 KTYGCYLSSAGHSLRAY-YIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        71 ~~yg~~~~~~g~~~p~t-fIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .+||+.      ..|.+ ||||++|+|++.+.|..+. ...++++..|+++
T Consensus       139 ~~~gv~------~~P~T~fVIDk~GkVv~~~~G~l~~-ee~e~~~~li~~l  182 (184)
T TIGR01626       139 NAWQLN------SEDSAIIVLDKTGKVKFVKEGALSD-SDIQTVISLVNGL  182 (184)
T ss_pred             HhcCCC------CCCceEEEECCCCcEEEEEeCCCCH-HHHHHHHHHHHHH
Confidence            999987      36787 9999999999999998642 2345556666554

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.13  E-value=5.3e-10  Score=77.20  Aligned_cols=78  Identities=12%  Similarity=0.150  Sum_probs=63.2

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|..+++.+.+++  +++. .++.+++|+.++.+..++|+++   ++      ++  .||++.+  +++++.||+.    
T Consensus        35 ~C~~~~p~l~~~~--~~~~-~~~~vi~v~~~~~~~~~~~~~~---~~------~~--~~p~~~~--~~~~~~~~~~----   94 (114)
T cd02967          35 VCKKLLPVIRSIA--RAEA-DWLDVVLASDGEKAEHQRFLKK---HG------LE--AFPYVLS--AELGMAYQVS----   94 (114)
T ss_pred             chHhHhHHHHHHH--HHhc-CCcEEEEEeCCCHHHHHHHHHH---hC------CC--CCcEEec--HHHHhhcCCC----
Confidence            4999999999987  4553 4688999987788888899886   65      51  3898874  5689999986    


Q ss_pred             CCcceEEEEECCCCcEEEEE
Q psy17183         81 GHSLRAYYIIDKRGYLRSMN  100 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~  100 (145)
                        ..|++||||++|+|++..
T Consensus        95 --~~P~~~vid~~G~v~~~~  112 (114)
T cd02967          95 --KLPYAVLLDEAGVIAAKG  112 (114)
T ss_pred             --CcCeEEEECCCCeEEecc
Confidence              379999999999999864

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.13  E-value=7.6e-10  Score=77.41  Aligned_cols=85  Identities=15%  Similarity=0.155  Sum_probs=69.3

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCC--CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCcc
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVD--SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLS   78 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~   78 (145)
                      .|..+++.++++++  .     +.+++|+.|  +++.+++|+++   ++      +   +||+++|.++++++.|++.  
T Consensus        34 ~C~~~~~~l~~~~~--~-----~~~i~i~~~~~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~i~--   92 (123)
T cd03011          34 VCRFTSPTVNQLAA--D-----YPVVSVALRSGDDGAVARFMQK---KG------Y---GFPVINDPDGVISARWGVS--   92 (123)
T ss_pred             hhhhhChHHHHHHh--h-----CCEEEEEccCCCHHHHHHHHHH---cC------C---CccEEECCCcHHHHhCCCC--
Confidence            48888999998873  3     678888876  46788888886   76      8   9999999999999999987  


Q ss_pred             CCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHH
Q psy17183         79 SAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILR  115 (145)
Q Consensus        79 ~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~  115 (145)
                          ..|+.||||++| |++...|..+    .+++.+
T Consensus        93 ----~~P~~~vid~~g-i~~~~~g~~~----~~~~~~  120 (123)
T cd03011          93 ----VTPAIVIVDPGG-IVFVTTGVTS----EWGLRL  120 (123)
T ss_pred             ----cccEEEEEcCCC-eEEEEeccCC----HHHHHh
Confidence                379999999999 9998887643    455544

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=8.1e-10  Score=81.33  Aligned_cols=88  Identities=18%  Similarity=0.221  Sum_probs=74.0

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC-chHHHHHhCCCccC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS-THAISKTYGCYLSS   79 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~-~~~va~~yg~~~~~   79 (145)
                      .|..|...|.+...  ++.  ++.|+.||.|-|+++++|+..   ++      +.  +...+||. +.++.+.||+...+
T Consensus        59 VC~~qvr~Fn~~aa--~~~--~~~Vl~IS~DLPFAq~RfC~a---eG------i~--nv~~lSd~r~~~Fge~yGv~I~e  123 (158)
T COG2077          59 VCATQVRKFNEEAA--KLG--NTVVLCISMDLPFAQKRFCGA---EG------IE--NVITLSDFRDRAFGENYGVLINE  123 (158)
T ss_pred             hhhHHHHHHHHHHh--ccC--CcEEEEEeCCChhHHhhhhhh---cC------cc--cceEhhhhhhhhhhHhhCEEecc
Confidence            38899999998773  443  699999999999999999996   64      41  68899997 77799999998765


Q ss_pred             C---CCcceEEEEECCCCcEEEEEeec
Q psy17183         80 A---GHSLRAYYIIDKRGYLRSMNVSD  103 (145)
Q Consensus        80 ~---g~~~p~tfIID~dG~I~~~~~~~  103 (145)
                      .   |+..|++||+|.+|+|.|..+-+
T Consensus       124 gpL~gLlARaV~V~De~g~V~y~elv~  150 (158)
T COG2077         124 GPLAGLLARAVFVLDENGKVTYSELVP  150 (158)
T ss_pred             ccccCeeeeEEEEEcCCCcEEEEEccc
Confidence            3   88899999999999999997643

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.07  E-value=1.8e-09  Score=93.67  Aligned_cols=94  Identities=16%  Similarity=0.197  Sum_probs=75.5

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC------CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD------SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGC   75 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D------~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~   75 (145)
                      |..++|.|++++  ++++..+++||+|+.+      +....++|.+.   .+      ++  .||++.|.++++++.|++
T Consensus        71 Ck~emP~L~eL~--~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~---~~------y~--~~pV~~D~~~~lak~fgV  137 (521)
T PRK14018         71 CLSELGETEKWA--QDAKFSSANLITVASPGFLHEKKDGDFQKWYAG---LD------YP--KLPVLTDNGGTLAQSLNI  137 (521)
T ss_pred             HHHHHHHHHHHH--HHhccCCeEEEEEecccccccccHHHHHHHHHh---CC------Cc--ccceeccccHHHHHHcCC
Confidence            899999999998  5788789999999863      23445556554   32      32  579999999999999999


Q ss_pred             CccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHH
Q psy17183         76 YLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE  118 (145)
Q Consensus        76 ~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~  118 (145)
                      .      .+|++||||++|+|++...|..+    .+++.+.|+
T Consensus       138 ~------giPTt~IIDkdGkIV~~~~G~~~----~eeL~a~Ie  170 (521)
T PRK14018        138 S------VYPSWAIIGKDGDVQRIVKGSIS----EAQALALIR  170 (521)
T ss_pred             C------CcCeEEEEcCCCeEEEEEeCCCC----HHHHHHHHH
Confidence            7      47999999999999999999864    566766666

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.01  E-value=2.7e-09  Score=99.23  Aligned_cols=95  Identities=18%  Similarity=0.143  Sum_probs=75.4

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeC---CC---HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSV---DS---HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGC   75 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~---D~---~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~   75 (145)
                      |..|+|.|++++  ++|+.+++.||+|+.   |.   .+..++|..   +++      +   +||++.|.++++++.|++
T Consensus       435 C~~e~P~L~~l~--~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~---~~~------i---~~pvv~D~~~~~~~~~~V  500 (1057)
T PLN02919        435 CMHVLPDLEFLE--KKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVL---RYN------I---SHPVVNDGDMYLWRELGV  500 (1057)
T ss_pred             HHhHhHHHHHHH--HHcCCCCeEEEEEecccccccccHHHHHHHHH---HhC------C---CccEEECCchHHHHhcCC
Confidence            999999999999  689989999999974   32   334445554   476      8   999999999999999998


Q ss_pred             CccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         76 YLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        76 ~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .      ..|++||||++|+|++.+.|+..    .+++.+.|+++
T Consensus       501 ~------~iPt~ilid~~G~iv~~~~G~~~----~~~l~~~l~~~  535 (1057)
T PLN02919        501 S------SWPTFAVVSPNGKLIAQLSGEGH----RKDLDDLVEAA  535 (1057)
T ss_pred             C------ccceEEEECCCCeEEEEEecccC----HHHHHHHHHHH
Confidence            7      47999999999999999888643    34555544444

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=98.93  E-value=3.2e-09  Score=75.39  Aligned_cols=82  Identities=13%  Similarity=0.155  Sum_probs=60.3

Q ss_pred             hhHHHHHHHHHhhhhhhhcC--CcEEEEEeCCCHH-HHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCcc
Q psy17183          2 DTKIACDVLKLVRKEILIVS--PFQIIAVSVDSHL-AHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLS   78 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~--gv~vi~VS~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~   78 (145)
                      |+.++|.+++++  ++++.+  +++|++||.|... ..+++.+.   ..   ...+   +|+. +|....+++.||+.  
T Consensus        33 C~~~~p~l~~~~--~~~~~~~~~~~vv~is~d~~~~~~~~~~~~---~~---~~~~---~~~~-~~~~~~~~~~~~v~--   98 (131)
T cd03009          33 CRAFTPKLVEFY--EKLKESGKNFEIVFISWDRDEESFNDYFSK---MP---WLAV---PFSD-RERRSRLNRTFKIE--   98 (131)
T ss_pred             HHHHhHHHHHHH--HHHHhcCCCEEEEEEECCCCHHHHHHHHHc---CC---eeEc---ccCC-HHHHHHHHHHcCCC--
Confidence            999999999998  588764  7999999998543 33444443   32   1114   4544 56678999999997  


Q ss_pred             CCCCcceEEEEECCCCcEEEEEe
Q psy17183         79 SAGHSLRAYYIIDKRGYLRSMNV  101 (145)
Q Consensus        79 ~~g~~~p~tfIID~dG~I~~~~~  101 (145)
                          ..|++||||++|+|+....
T Consensus        99 ----~~P~~~lid~~G~i~~~~~  117 (131)
T cd03009          99 ----GIPTLIILDADGEVVTTDA  117 (131)
T ss_pred             ----CCCEEEEECCCCCEEcccH
Confidence                3799999999999986643

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=98.92  E-value=8.7e-09  Score=78.42  Aligned_cols=89  Identities=4%  Similarity=0.081  Sum_probs=67.4

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEec-CchHHHHHhCCCccC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSD-STHAISKTYGCYLSS   79 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD-~~~~va~~yg~~~~~   79 (145)
                      .|.+|+|.|++++  ++|   |+.|++||.|..            ..      .   .||++.| ..+.+.+.||+..  
T Consensus        83 ~C~~e~P~L~~l~--~~~---g~~Vi~Vs~D~~------------~~------~---~fPv~~dd~~~~~~~~~g~~~--  134 (181)
T PRK13728         83 YCHQFDPVLKQLA--QQY---GFSVFPYTLDGQ------------GD------T---AFPEALPAPPDVMQTFFPNIP--  134 (181)
T ss_pred             hHHHHHHHHHHHH--HHc---CCEEEEEEeCCC------------CC------C---CCceEecCchhHHHHHhCCCC--
Confidence            4999999999998  455   799999998742            11      5   8999996 6778888999521  


Q ss_pred             CCCcceEEEEECCCCcEEE-EEeecCCCCCCHHHHHHHHHhcccc
Q psy17183         80 AGHSLRAYYIIDKRGYLRS-MNVSDIQVGRNLKEILRQVEAFQLV  123 (145)
Q Consensus        80 ~g~~~p~tfIID~dG~I~~-~~~~~~~~~~~~~ell~~i~~l~~~  123 (145)
                        ...|++||||++|+|++ .+.|...    .+++.+.|+.+...
T Consensus       135 --~~iPttfLId~~G~i~~~~~~G~~~----~~~L~~~I~~ll~~  173 (181)
T PRK13728        135 --VATPTTFLVNVNTLEALPLLQGATD----AAGFMARMDTVLQM  173 (181)
T ss_pred             --CCCCeEEEEeCCCcEEEEEEECCCC----HHHHHHHHHHHHhh
Confidence              14799999999999975 7888753    56666666665543

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=98.89  E-value=1.2e-08  Score=68.39  Aligned_cols=75  Identities=16%  Similarity=0.164  Sum_probs=56.2

Q ss_pred             hhHHHHHHHHHhhhhhhh-cCCcEEEEEeCCC-HHHHHHHHHHHhhcCCCCCCCCCCCCccEE---ecCchHHHHHhCCC
Q psy17183          2 DTKIACDVLKLVRKEILI-VSPFQIIAVSVDS-HLAHLAWTKTLTATSSNRSAIDPSKIVPLL---SDSTHAISKTYGCY   76 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~-~~gv~vi~VS~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~fpll---sD~~~~va~~yg~~   76 (145)
                      |..+++.+.+++  +.|+ ..++++|+||.|. .+..+++.++   .+      .   +++.+   .+....+.+.|++.
T Consensus        16 c~~~~~~l~~l~--~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~---~~------~---~~~~~~~~~~~~~~l~~~~~i~   81 (95)
T PF13905_consen   16 CKKELPKLKELY--KKYKKKDDVEFVFVSLDEDEEEWKKFLKK---NN------F---PWYNVPFDDDNNSELLKKYGIN   81 (95)
T ss_dssp             HHHHHHHHHHHH--HHHTTTTTEEEEEEE-SSSHHHHHHHHHT---CT------T---SSEEEETTTHHHHHHHHHTT-T
T ss_pred             HHHHHHHHHHHH--HHhCCCCCEEEEEEEeCCCHHHHHHHHHh---cC------C---CceEEeeCcchHHHHHHHCCCC
Confidence            899999999999  5887 7889999999984 3444555443   53      3   44443   34478899999988


Q ss_pred             ccCCCCcceEEEEECCCCcE
Q psy17183         77 LSSAGHSLRAYYIIDKRGYL   96 (145)
Q Consensus        77 ~~~~g~~~p~tfIID~dG~I   96 (145)
                            ..|+++|||++|+|
T Consensus        82 ------~iP~~~lld~~G~I   95 (95)
T PF13905_consen   82 ------GIPTLVLLDPDGKI   95 (95)
T ss_dssp             ------SSSEEEEEETTSBE
T ss_pred             ------cCCEEEEECCCCCC
Confidence                  47999999999997

...

>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=1.1e-08  Score=75.30  Aligned_cols=90  Identities=18%  Similarity=0.295  Sum_probs=75.1

Q ss_pred             hhH-HHHHHHHHhhhhhhhcCCcE-EEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC
Q psy17183          2 DTK-IACDVLKLVRKEILIVSPFQ-IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS   79 (145)
Q Consensus         2 ~t~-e~~~~~~~~~~~~f~~~gv~-vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~   79 (145)
                      |+. .+|.|.+++  ++|+++|+. |+.||+++++...+|++.   .+  + . -   ...+++|.++++.+++|+....
T Consensus        53 CS~~hlPgY~~~~--d~f~~kGVD~I~cVSVND~FVm~AWak~---~g--~-~-~---~I~fi~Dg~geFTk~~Gm~~d~  120 (165)
T COG0678          53 CSSSHLPGYLELA--DEFKAKGVDEIYCVSVNDAFVMNAWAKS---QG--G-E-G---NIKFIPDGNGEFTKAMGMLVDK  120 (165)
T ss_pred             cccccCccHHHHH--HHHHHcCCceEEEEEeCcHHHHHHHHHh---cC--C-C-c---cEEEecCCCchhhhhcCceeec
Confidence            554 899999999  799999995 899999999999999997   43  1 1 1   5789999999999999997653


Q ss_pred             --CCC---cceEEEEECCCCcEEEEEeecC
Q psy17183         80 --AGH---SLRAYYIIDKRGYLRSMNVSDI  104 (145)
Q Consensus        80 --~g~---~~p~tfIID~dG~I~~~~~~~~  104 (145)
                        .|+   +.|...|| +||+|.+.++.+.
T Consensus       121 ~~~g~G~RS~RYsmvV-~nGvV~~~~iE~p  149 (165)
T COG0678         121 SDLGFGVRSWRYSMVV-ENGVVEKLFIEPP  149 (165)
T ss_pred             ccCCcceeeeeEEEEE-eCCeEEEEEecCC
Confidence              232   67889999 9999999998763

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=98.84  E-value=2.9e-08  Score=70.84  Aligned_cols=82  Identities=16%  Similarity=0.193  Sum_probs=60.6

Q ss_pred             ChhHHHHHHHHHhhhhhhhcC--CcEEEEEeCCC-HHHHHHHHHHHhhcCCCCCCCCCCCCccEEec--CchHHHHHhCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVS--PFQIIAVSVDS-HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSD--STHAISKTYGC   75 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~--gv~vi~VS~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD--~~~~va~~yg~   75 (145)
                      .|..+++.+++++  ++++..  +++|++||.|. ....++|.++   ++  .   ..  .++ ..|  ..+.+++.||+
T Consensus        31 ~C~~~~p~l~~l~--~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~---~~--~---~~--~~~-~~d~~~~~~~~~~~~v   97 (132)
T cd02964          31 PCRAFTPKLVEFY--EKLKEEGKNFEIVFVSRDRSEESFNEYFSE---MP--P---WL--AVP-FEDEELRELLEKQFKV   97 (132)
T ss_pred             hHHHHHHHHHHHH--HHHhhcCCCeEEEEEecCCCHHHHHHHHhc---CC--C---eE--eec-cCcHHHHHHHHHHcCC
Confidence            4999999999998  578764  89999999974 4567777775   42  0   20  122 234  24678889998


Q ss_pred             CccCCCCcceEEEEECCCCcEEEEEe
Q psy17183         76 YLSSAGHSLRAYYIIDKRGYLRSMNV  101 (145)
Q Consensus        76 ~~~~~g~~~p~tfIID~dG~I~~~~~  101 (145)
                      .      ..|++||||++|+|++...
T Consensus        98 ~------~iPt~~lid~~G~iv~~~~  117 (132)
T cd02964          98 E------GIPTLVVLKPDGDVVTTNA  117 (132)
T ss_pred             C------CCCEEEEECCCCCEEchhH
Confidence            7      3799999999999986654

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>KOG0541|consensus

Probab=98.74  E-value=2e-08  Score=74.38  Aligned_cols=94  Identities=24%  Similarity=0.338  Sum_probs=75.4

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcE-EEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQ-IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~-vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      |...+|.|.+..  ++|+.+|+. ||.||+|+++...+|.+.+.+.       -   ...+++|++|++.+++|+..+..
T Consensus        60 s~~HvPGyi~~a--~elksKGVd~iicvSVnDpFv~~aW~k~~g~~-------~---~V~f~aD~~g~ftk~lgleld~~  127 (171)
T KOG0541|consen   60 SSSHVPGYIEKA--DELKSKGVDEIICVSVNDPFVMKAWAKSLGAN-------D---HVKFVADPAGEFTKSLGLELDLS  127 (171)
T ss_pred             ccccCchHHHHH--HHHHhcCCcEEEEEecCcHHHHHHHHhhcCcc-------c---eEEEEecCCCceeeeccceeeec
Confidence            456789999988  799999996 8889999999999999984222       2   68899999999999999876531


Q ss_pred             ----C-CcceEEEEECCCCcEEEEEeecCCCCC
Q psy17183         81 ----G-HSLRAYYIIDKRGYLRSMNVSDIQVGR  108 (145)
Q Consensus        81 ----g-~~~p~tfIID~dG~I~~~~~~~~~~~~  108 (145)
                          | .+.|...++ .||+|.+..+.+.+.+-
T Consensus       128 d~~~g~RS~R~a~vv-engkV~~~nvE~~g~~~  159 (171)
T KOG0541|consen  128 DKLLGVRSRRYALVV-ENGKVTVVNVEEGGTDF  159 (171)
T ss_pred             cccCccccccEEEEE-eCCeEEEEEeccCCCce
Confidence                2 256777777 89999999998765433

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=98.73  E-value=1e-07  Score=72.58  Aligned_cols=104  Identities=8%  Similarity=0.073  Sum_probs=68.1

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeC--------CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEE--ecCchH---
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSV--------DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLL--SDSTHA---   68 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~--------D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpll--sD~~~~---   68 (145)
                      ||.|++.|++++  ++|+.+|++|+||+.        ++.+.+++|++.  +++      +   +||++  .|.+|+   
T Consensus        39 ~~~q~~~L~~L~--~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~--~~g------~---~Fpv~~k~dvnG~~~~  105 (183)
T PRK10606         39 LTPQYEQLENIQ--KAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRT--TWG------V---TFPMFSKIEVNGEGRH  105 (183)
T ss_pred             CcHHHHHHHHHH--HHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHH--ccC------C---CceeEEEEccCCCCCC
Confidence            467999999999  699999999999987        467888999863  265      8   99999  444433   


Q ss_pred             -HHHHhCCCccC------CCC------------------cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         69 -ISKTYGCYLSS------AGH------------------SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        69 -va~~yg~~~~~------~g~------------------~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                       +-+-+.-..+.      .+.                  =+=+-|+||++|+++..+-...  .+...++.+.|+++
T Consensus       106 pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r~~~~~--~p~~~~i~~~i~~~  180 (183)
T PRK10606        106 PLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRFSPDM--TPEDPIVMESIKLA  180 (183)
T ss_pred             HHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEEECCCC--CCCHHHHHHHHHHH
Confidence             32222110000      000                  0113799999999998875432  23344566666654

>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme

Probab=98.72  E-value=1.4e-07  Score=65.98  Aligned_cols=80  Identities=15%  Similarity=0.164  Sum_probs=65.5

Q ss_pred             HHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC---------
Q psy17183          9 VLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS---------   79 (145)
Q Consensus         9 ~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~---------   79 (145)
                      |++..  ++|++.|+.+|+|+..+++..++|++.   ..      +   +|||++|++.++-+++|+....         
T Consensus         2 L~~~~--~~l~~~gv~lv~I~~g~~~~~~~f~~~---~~------~---p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~   67 (115)
T PF13911_consen    2 LSRRK--PELEAAGVKLVVIGCGSPEGIEKFCEL---TG------F---PFPLYVDPERKLYKALGLKRGLKWSLLPPAL   67 (115)
T ss_pred             hhHhH--HHHHHcCCeEEEEEcCCHHHHHHHHhc---cC------C---CCcEEEeCcHHHHHHhCCccccccCCCchHH
Confidence            34444  688999999999999999789999975   54      8   9999999999999999986521         


Q ss_pred             ---------------------CC--CcceEEEEECCCCcEEEEEee
Q psy17183         80 ---------------------AG--HSLRAYYIIDKRGYLRSMNVS  102 (145)
Q Consensus        80 ---------------------~g--~~~p~tfIID~dG~I~~~~~~  102 (145)
                                           .|  ....++||+|++|+|+|.|..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~  113 (115)
T PF13911_consen   68 WSGLSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHRD  113 (115)
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEec
Confidence                                 01  246789999999999999874

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=98.67  E-value=1.4e-07  Score=69.89  Aligned_cols=84  Identities=10%  Similarity=0.078  Sum_probs=57.9

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHH-HHh---CCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAIS-KTY---GCY   76 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va-~~y---g~~   76 (145)
                      .|..|+|.+++++  +++   |+.|++||.|...           .       -   .||...|.+.... +.|   ++.
T Consensus        64 pCr~e~P~L~~l~--~~~---~~~Vi~Vs~d~~~-----------~-------~---~fp~~~~~~~~~~~~~~~~~~v~  117 (153)
T TIGR02738        64 YCHQFAPVLKRFS--QQF---GLPVYAFSLDGQG-----------L-------T---GFPDPLPATPEVMQTFFPNPRPV  117 (153)
T ss_pred             hHHHHHHHHHHHH--HHc---CCcEEEEEeCCCc-----------c-------c---ccccccCCchHHHHHHhccCCCC
Confidence            4999999999998  455   6899999988522           1       1   4666665544544 445   443


Q ss_pred             ccCCCCcceEEEEECCCCcE-EEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         77 LSSAGHSLRAYYIIDKRGYL-RSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        77 ~~~~g~~~p~tfIID~dG~I-~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                            ..|++||||++|++ +..+.|..+    .+++.+.|+.+
T Consensus       118 ------~iPTt~LID~~G~~i~~~~~G~~s----~~~l~~~I~~l  152 (153)
T TIGR02738       118 ------VTPATFLVNVNTRKAYPVLQGAVD----EAELANRMDEI  152 (153)
T ss_pred             ------CCCeEEEEeCCCCEEEEEeecccC----HHHHHHHHHHh
Confidence                  47999999999886 446777643    56666666543

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []

Probab=98.63  E-value=5.4e-09  Score=60.90  Aligned_cols=26  Identities=27%  Similarity=0.572  Sum_probs=23.1

Q ss_pred             hccccccCCcccCCCCCCCCCccccC
Q psy17183        119 AFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus       119 ~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                      +||++++|+.+||+||++|+++|+|+
T Consensus         1 ALQ~~d~~~v~tPanW~pGd~~ivpp   26 (40)
T PF10417_consen    1 ALQFTDKHGVATPANWKPGDDVIVPP   26 (40)
T ss_dssp             HHHHHHHHSSBBCTTTCTTSGEBE-T
T ss_pred             CceehhhhCcccCcCCCCCCCeEcCC
Confidence            57899999999999999999999854

The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....

>TIGR02740 TraF-like TraF-like protein

Probab=97.79  E-value=0.00022  Score=57.39  Aligned_cols=84  Identities=11%  Similarity=0.108  Sum_probs=61.1

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|..++|.|+++.  ++|   |+.|++||.|...           .       -   .||.+ +.+..+++.||+.    
T Consensus       180 ~C~~~~P~L~~la--~~y---g~~Vi~VsvD~~~-----------~-------~---~fp~~-~~d~~la~~~gV~----  228 (271)
T TIGR02740       180 YCHQQAPILQAFE--DRY---GIEVLPVSVDGGP-----------L-------P---GFPNA-RPDAGQAQQLKIR----  228 (271)
T ss_pred             cHHHHhHHHHHHH--HHc---CcEEEEEeCCCCc-----------c-------c---cCCcc-cCCHHHHHHcCCC----
Confidence            4899999999988  355   6999999998521           1       1   46665 4556689999997    


Q ss_pred             CCcceEEEEECCC-CcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         81 GHSLRAYYIIDKR-GYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        81 g~~~p~tfIID~d-G~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                        ..|++||+|++ |+|..+..|..+    .+++.+.|..+.
T Consensus       229 --~vPtl~Lv~~~~~~v~~v~~G~~s----~~eL~~~i~~~a  264 (271)
T TIGR02740       229 --TVPAVFLADPDPNQFTPIGFGVMS----ADELVDRILLAA  264 (271)
T ss_pred             --cCCeEEEEECCCCEEEEEEeCCCC----HHHHHHHHHHHh
Confidence              47999999995 666666666543    567777666554

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=97.61  E-value=0.00092  Score=48.58  Aligned_cols=46  Identities=9%  Similarity=0.161  Sum_probs=35.1

Q ss_pred             HHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcccc
Q psy17183         68 AISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLV  123 (145)
Q Consensus        68 ~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~  123 (145)
                      .+++.|++.      ..|+++|+|++|+++....|..+    .+++.+.|+++...
T Consensus        67 ~~~~~~~V~------~iPt~v~~~~~G~~v~~~~G~~~----~~~l~~~l~~l~~~  112 (142)
T cd02950          67 PEIDRYRVD------GIPHFVFLDREGNEEGQSIGLQP----KQVLAQNLDALVAG  112 (142)
T ss_pred             HHHHHcCCC------CCCEEEEECCCCCEEEEEeCCCC----HHHHHHHHHHHHcC
Confidence            567888887      37999999999999999988643    45666666665543

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.0011  Score=49.35  Aligned_cols=101  Identities=12%  Similarity=0.110  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEec--CchH----
Q psy17183          3 TKIACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSD--STHA----   68 (145)
Q Consensus         3 t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD--~~~~----   68 (145)
                      |.|...|+.+|  ++|+.+|+.|+|.-.+        +.+..++|+..  .++      +   +||+++=  -+|+    
T Consensus        40 TpQYegLe~Ly--~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~--~Yg------V---tFp~f~Ki~VnG~~a~P  106 (162)
T COG0386          40 TPQYEGLEALY--KKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQL--NYG------V---TFPMFSKIDVNGKNAHP  106 (162)
T ss_pred             cHhHHHHHHHH--HHHhhCCcEEEeccccccccCCCCCHHHHHHHHHh--ccC------c---eeeeeeEEeecCCCCCc
Confidence            67888999999  6999999999999543        56778889886  455      8   9999853  2222    


Q ss_pred             HHHHhCCCccC--CCC---cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         69 ISKTYGCYLSS--AGH---SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        69 va~~yg~~~~~--~g~---~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +-+.+--..+.  .|-   =+=+-|+||++|+|+.++....    ..+++...|+++
T Consensus       107 Ly~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t----~P~d~~~~Ie~l  159 (162)
T COG0386         107 LYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKT----KPEDIELAIEKL  159 (162)
T ss_pred             HHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCC----ChhhHHHHHHHH
Confidence            22222111100  011   1235799999999998875442    234555566554

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=97.45  E-value=0.00035  Score=52.50  Aligned_cols=86  Identities=19%  Similarity=0.239  Sum_probs=57.4

Q ss_pred             hhHHHHHHHHHhhhhhhhc--CCcEEEEEeCC----CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEe---cCchHHHHH
Q psy17183          2 DTKIACDVLKLVRKEILIV--SPFQIIAVSVD----SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLS---DSTHAISKT   72 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~--~gv~vi~VS~D----~~~~~~~~~~~~~~~~~~~~~~~~~~~fplls---D~~~~va~~   72 (145)
                      |...+..+.+..  +.+.+  ..++++.||.|    +++..++|++.   ++      .   .|..+.   +.-.++++.
T Consensus        68 Cp~~l~~l~~~~--~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~~---~~------~---~~~~ltg~~~~i~~l~~~  133 (174)
T PF02630_consen   68 CPTTLANLSQLQ--KQLGEEGKDVQFVFISVDPERDTPEVLKKYAKK---FG------P---DFIGLTGSREEIEELAKQ  133 (174)
T ss_dssp             HHHHHHHHHHHH--HHHHHTTTTEEEEEEESSTTTC-HHHHHHHHHC---HT------T---TCEEEEEEHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH--HHhhhccCceEEEEEEeCCCCCCHHHHHHHHHh---cC------C---CcceeEeCHHHHHHHHHH
Confidence            777777777766  45554  47899999976    57888999886   44      3   444333   345678888


Q ss_pred             hCCCccC------C--CC--cceEEEEECCCCcEEEEEe
Q psy17183         73 YGCYLSS------A--GH--SLRAYYIIDKRGYLRSMNV  101 (145)
Q Consensus        73 yg~~~~~------~--g~--~~p~tfIID~dG~I~~~~~  101 (145)
                      |++....      .  +.  -...+|||||+|+|+..+.
T Consensus       134 ~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~  172 (174)
T PF02630_consen  134 FGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN  172 (174)
T ss_dssp             CTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred             HHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence            9876421      1  11  1357899999999998764

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ

Probab=97.33  E-value=0.0036  Score=46.74  Aligned_cols=93  Identities=11%  Similarity=0.152  Sum_probs=60.0

Q ss_pred             HHHHHHhhhhhhhcCCcEEEEE-eCCC-HH----HHHHHHHHHhhcCCCCCCCCCCCCcc-EEecCchHHHHHhCCCccC
Q psy17183          7 CDVLKLVRKEILIVSPFQIIAV-SVDS-HL----AHLAWTKTLTATSSNRSAIDPSKIVP-LLSDSTHAISKTYGCYLSS   79 (145)
Q Consensus         7 ~~~~~~~~~~~f~~~gv~vi~V-S~D~-~~----~~~~~~~~~~~~~~~~~~~~~~~~fp-llsD~~~~va~~yg~~~~~   79 (145)
                      ..|.+......|....++..+| +.|+ ..    -.+..+++- +..      .   |+. ++.|.+|.+.++|++... 
T Consensus        56 ~~l~~aik~a~f~~d~yqtttIiN~dDAi~gt~~fVrss~e~~-kk~------~---p~s~~vlD~~G~~~~aW~L~~~-  124 (160)
T PF09695_consen   56 APLIEAIKAAKFPHDKYQTTTIINLDDAIWGTGGFVRSSAEDS-KKE------F---PWSQFVLDSNGVVRKAWQLQEE-  124 (160)
T ss_pred             HHHHHHHHHcCCCccceeEEEEEecccccccchHHHHHHHHHh-hhh------C---CCcEEEEcCCCceeccccCCCC-
Confidence            3445444323476677888877 5653 11    223333321 111      4   566 789999999999999853 


Q ss_pred             CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHH
Q psy17183         80 AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE  118 (145)
Q Consensus        80 ~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~  118 (145)
                          .-+.+|+|++|+|+|..-|..+    .+|+.+.|.
T Consensus       125 ----~SaiiVlDK~G~V~F~k~G~Ls----~~Ev~qVi~  155 (160)
T PF09695_consen  125 ----SSAIIVLDKQGKVQFVKEGALS----PAEVQQVIA  155 (160)
T ss_pred             ----CceEEEEcCCccEEEEECCCCC----HHHHHHHHH
Confidence                2468999999999999988865    355555443

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=97.31  E-value=0.001  Score=45.34  Aligned_cols=74  Identities=19%  Similarity=0.225  Sum_probs=48.4

Q ss_pred             cCCcEEEEEeCCCHHH-HHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEE
Q psy17183         20 VSPFQIIAVSVDSHLA-HLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRS   98 (145)
Q Consensus        20 ~~gv~vi~VS~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~   98 (145)
                      ..++.++.++.+.... ..+|...   .+           .+-+.....++++.||+.      ..|+.+++|++|++++
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------~~~~~~~~~~l~~~~~v~------gtPt~~~~d~~G~~v~   97 (112)
T PF13098_consen   38 KDDFQVIFVNIDDSRDESEAVLDF---DG-----------QKNVRLSNKELAQRYGVN------GTPTIVFLDKDGKIVY   97 (112)
T ss_dssp             HCECEEEECESHSHHHHHHHHHSH---TC-----------HSSCHHHHHHHHHHTT--------SSSEEEECTTTSCEEE
T ss_pred             hcCeEEEEEecCCccccccccccc---cc-----------chhhhHHHHHHHHHcCCC------ccCEEEEEcCCCCEEE
Confidence            3468899998876553 3344442   21           222233456899999988      3799999999999999


Q ss_pred             EEeecCCCCCCHHHHHHHH
Q psy17183         99 MNVSDIQVGRNLKEILRQV  117 (145)
Q Consensus        99 ~~~~~~~~~~~~~ell~~i  117 (145)
                      ...|..+    .+++++.|
T Consensus        98 ~~~G~~~----~~~l~~~L  112 (112)
T PF13098_consen   98 RIPGYLS----PEELLKML  112 (112)
T ss_dssp             EEESS------HHHHHHHH
T ss_pred             EecCCCC----HHHHHhhC
Confidence            8888754    57776654

...

>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like

Probab=97.25  E-value=0.0068  Score=47.22  Aligned_cols=119  Identities=13%  Similarity=0.116  Sum_probs=80.6

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      +||..+..+.-.+  .-+..+++.+++||-.+.+...+|++.   .+      +   .||.+|.....+...|++.....
T Consensus        87 gCs~~~D~~~g~l--~hL~~rd~tfa~vSraP~~~i~afk~r---mG------W---~~pw~Ss~gs~Fn~D~~~~~~~~  152 (211)
T PF05988_consen   87 GCSFWADHIDGAL--RHLHARDTTFAVVSRAPLEKIEAFKRR---MG------W---TFPWYSSYGSDFNYDFGVSFDEG  152 (211)
T ss_pred             chhhhHhhhhhhH--HHHHhCCceEEEEeCCCHHHHHHHHHh---cC------C---CceEEEcCCCcccccccceeccC
Confidence            6999999995555  368899999999999999999999997   76      9   99999999999999999855322


Q ss_pred             C-CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccC-CcccCCCCCCC
Q psy17183         81 G-HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDST-DTQCPVNWTTG  137 (145)
Q Consensus        81 g-~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~-~~~~p~~w~~~  137 (145)
                      + .+-=++|+-|. |+|...+...   +|-.+.+.-...=|..+..- .+.-|.+|-..
T Consensus       153 ~~~~g~svF~Rdg-~~VfhTyst~---~RG~e~l~~~~~lLDlTP~GR~E~~~~~W~r~  207 (211)
T PF05988_consen  153 GEMPGLSVFLRDG-GRVFHTYSTY---GRGGERLMPTWNLLDLTPLGRQEDPPMDWWRR  207 (211)
T ss_pred             CCceeEEEEEEcC-CEEEEEeecC---CCCchhhhhHHHHHhcCCCCCCCCCCCCcccc
Confidence            1 12225666665 8887665443   23334444333222222111 23377888654

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=97.10  E-value=0.0019  Score=45.20  Aligned_cols=47  Identities=17%  Similarity=0.152  Sum_probs=36.0

Q ss_pred             CchHHHHHhCCCccCCCCcceEEEEECCC-CcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         65 STHAISKTYGCYLSSAGHSLRAYYIIDKR-GYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        65 ~~~~va~~yg~~~~~~g~~~p~tfIID~d-G~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      ...+++++|++.      ..|+++++|++ |+++....|..+    .+++.+.|+.+.
T Consensus        72 ~~~~l~~~~~v~------~~Pt~~~~~~~gg~~~~~~~G~~~----~~~~~~~l~~~~  119 (125)
T cd02951          72 SEKELARKYRVR------FTPTVIFLDPEGGKEIARLPGYLP----PDEFLAYLEYVQ  119 (125)
T ss_pred             cHHHHHHHcCCc------cccEEEEEcCCCCceeEEecCCCC----HHHHHHHHHHHH
Confidence            457899999987      47999999999 899998888743    455556555543

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=97.07  E-value=0.011  Score=45.78  Aligned_cols=102  Identities=16%  Similarity=0.201  Sum_probs=67.1

Q ss_pred             hhHHHHHHHHHhhhhhhh---cCCcEEEEEeCCC----HHHHHHHHH-HHhhcCCCCCCCCCCCCccEEe---cCchHHH
Q psy17183          2 DTKIACDVLKLVRKEILI---VSPFQIIAVSVDS----HLAHLAWTK-TLTATSSNRSAIDPSKIVPLLS---DSTHAIS   70 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~---~~gv~vi~VS~D~----~~~~~~~~~-~~~~~~~~~~~~~~~~~fplls---D~~~~va   70 (145)
                      |-.++..+.++.  +++.   ..+++++-||.|+    ++..+++.. .   ..      -   .|--+.   +...+++
T Consensus        83 CP~~l~~l~~~~--~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~---~~------~---~~~~ltg~~~~~~~~~  148 (207)
T COG1999          83 CPTTLAELKALL--KKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELN---FD------P---RWIGLTGTPEQIEEVA  148 (207)
T ss_pred             ChHHHHHHHHHH--HHhccccCCCEEEEEEEECCCCCCHHHHHHHhccc---CC------C---CeeeeeCCHHHHHHHH
Confidence            777777787777  4555   5668899999874    556666655 2   11      1   233333   3467889


Q ss_pred             HHhCCCccC---C----CC--cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         71 KTYGCYLSS---A----GH--SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        71 ~~yg~~~~~---~----g~--~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      ++|++....   .    ..  -.-..|+||++|++.....+..+    .+++++.|+.+-
T Consensus       149 k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~----~~~i~~~l~~l~  204 (207)
T COG1999         149 KAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEP----PEEIAADLKKLL  204 (207)
T ss_pred             HHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCC----hHHHHHHHHHHh
Confidence            999998411   1    11  12458999999999877655432    688888887764

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=96.97  E-value=0.012  Score=40.04  Aligned_cols=40  Identities=10%  Similarity=0.023  Sum_probs=28.5

Q ss_pred             HHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         68 AISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        68 ~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      ++++.|++.      ..|+.+++ ++|+++..+.|..     ..++.+.+.+
T Consensus        62 ~l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~~-----~~~l~~~~~~  101 (103)
T cd02985          62 ELCRREKII------EVPHFLFY-KDGEKIHEEEGIG-----PDELIGDVLY  101 (103)
T ss_pred             HHHHHcCCC------cCCEEEEE-eCCeEEEEEeCCC-----HHHHHHHHHh
Confidence            567778887      36875555 9999998888764     3667666543

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>PF13728 TraF: F plasmid transfer operon protein

Probab=96.76  E-value=0.013  Score=45.60  Aligned_cols=79  Identities=16%  Similarity=0.199  Sum_probs=53.3

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      +|..+.|-++.+.  ++   .|+.|++||.|..             .      ++  .||-... +..+++.+|+.    
T Consensus       134 ~C~~~~pil~~~~--~~---yg~~v~~vs~DG~-------------~------~~--~fp~~~~-~~g~~~~l~v~----  182 (215)
T PF13728_consen  134 YCQQQAPILQQFA--DK---YGFSVIPVSLDGR-------------P------IP--SFPNPRP-DPGQAKRLGVK----  182 (215)
T ss_pred             hhHHHHHHHHHHH--HH---hCCEEEEEecCCC-------------C------Cc--CCCCCCC-CHHHHHHcCCC----
Confidence            4888888888876  23   3899999998851             1      11  3332221 66788899997    


Q ss_pred             CCcceEEEEECCCC-cEEEEEeecCCCCCCHHHHHHH
Q psy17183         81 GHSLRAYYIIDKRG-YLRSMNVSDIQVGRNLKEILRQ  116 (145)
Q Consensus        81 g~~~p~tfIID~dG-~I~~~~~~~~~~~~~~~ell~~  116 (145)
                        ..|++|++++++ ++.-+..|..    +.++|++-
T Consensus       183 --~~Pal~Lv~~~~~~~~pv~~G~~----s~~~L~~r  213 (215)
T PF13728_consen  183 --VTPALFLVNPNTKKWYPVSQGFM----SLDELEDR  213 (215)
T ss_pred             --cCCEEEEEECCCCeEEEEeeecC----CHHHHHHh
Confidence              479999999998 5544445554    36777654

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=96.43  E-value=0.037  Score=38.17  Aligned_cols=49  Identities=14%  Similarity=0.178  Sum_probs=36.8

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +=.|....++++||+.      ..|+++++ ++|+++....|..    +.+++.+.|++|
T Consensus        63 vd~d~~~~l~~~~~V~------~~Pt~~i~-~~g~~~~~~~G~~----~~~~l~~~i~~~  111 (111)
T cd02963          63 VNAGHERRLARKLGAH------SVPAIVGI-INGQVTFYHDSSF----TKQHVVDFVRKL  111 (111)
T ss_pred             EeccccHHHHHHcCCc------cCCEEEEE-ECCEEEEEecCCC----CHHHHHHHHhcC
Confidence            4456678899999997      47999999 5998877766653    357777777654

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=95.97  E-value=0.065  Score=42.99  Aligned_cols=82  Identities=18%  Similarity=0.258  Sum_probs=53.5

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|..+.|-++.+.     +..|+.|++||.|.             ..      ++  .||-.- .+...++.+|+..   
T Consensus       164 ~C~~~apil~~fa-----~~ygi~v~~VS~DG-------------~~------~p--~fp~~~-~d~gqa~~l~v~~---  213 (256)
T TIGR02739       164 ISQKMAPVIQAFA-----KEYGISVIPISVDG-------------TL------IP--GLPNSR-SDSGQAQHLGVKY---  213 (256)
T ss_pred             hhHHHHHHHHHHH-----HHhCCeEEEEecCC-------------CC------CC--CCCCcc-CChHHHHhcCCcc---
Confidence            4777777777776     24479999999885             11      22  344322 2455688899873   


Q ss_pred             CCcceEEEEECCC-CcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         81 GHSLRAYYIIDKR-GYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        81 g~~~p~tfIID~d-G~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                         .|++|+++++ +++.-+..|.+    +.+++.+.|..
T Consensus       214 ---~Pal~Lv~~~t~~~~pv~~G~i----S~deL~~Ri~~  246 (256)
T TIGR02739       214 ---FPALYLVNPKSQKMSPLAYGFI----SQDELKERILN  246 (256)
T ss_pred             ---CceEEEEECCCCcEEEEeeccC----CHHHHHHHHHH
Confidence               7999999999 55544445554    36777655543

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=95.82  E-value=0.098  Score=35.34  Aligned_cols=43  Identities=16%  Similarity=0.159  Sum_probs=32.1

Q ss_pred             chHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         66 THAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        66 ~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      ..+++++|++.      ..|+ |++-++|+++....|.     +..++++.|++|
T Consensus        60 ~~~~~~~~~v~------~~Pt-~~~~~~g~~~~~~~G~-----~~~~~~~~i~~~  102 (102)
T cd02948          60 TIDTLKRYRGK------CEPT-FLFYKNGELVAVIRGA-----NAPLLNKTITEL  102 (102)
T ss_pred             CHHHHHHcCCC------cCcE-EEEEECCEEEEEEecC-----ChHHHHHHHhhC
Confidence            66788999988      3685 4555899999888774     357788888764

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=95.66  E-value=0.15  Score=33.58  Aligned_cols=46  Identities=13%  Similarity=0.203  Sum_probs=34.4

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHH
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQV  117 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i  117 (145)
                      +=.|...++++.|++.      ..|++++++ +|+++..+.|..    +.+++...|
T Consensus        50 vd~~~~~~l~~~~~i~------~~Pt~~~~~-~g~~~~~~~g~~----~~~~l~~~l   95 (96)
T cd02956          50 VNCDAQPQIAQQFGVQ------ALPTVYLFA-AGQPVDGFQGAQ----PEEQLRQML   95 (96)
T ss_pred             EeccCCHHHHHHcCCC------CCCEEEEEe-CCEEeeeecCCC----CHHHHHHHh
Confidence            4466788899999987      479999996 999887776653    356666554

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>COG3054 Predicted transcriptional regulator [General function prediction only]

Probab=95.53  E-value=0.048  Score=40.72  Aligned_cols=52  Identities=13%  Similarity=0.289  Sum_probs=37.2

Q ss_pred             EEecCchHHHH-HhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         61 LLSDSTHAISK-TYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        61 llsD~~~~va~-~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      ++.|..| +++ +|++...     --+.+++|++|+|.|+.-|..+. .++.+++..|..
T Consensus       129 ~vlD~~g-vak~AWqL~e~-----~SaivVlDk~G~VkfvkeGaLt~-aevQ~Vi~ll~~  181 (184)
T COG3054         129 FVLDSNG-VAKNAWQLKEE-----SSAVVVLDKDGRVKFVKEGALTQ-AEVQQVIDLLQK  181 (184)
T ss_pred             eEEccch-hhhhhhccccc-----cceEEEEcCCCcEEEEecCCccH-HHHHHHHHHHHH
Confidence            8899999 555 9998753     35789999999999999887642 223444444433

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=95.33  E-value=0.14  Score=40.60  Aligned_cols=55  Identities=24%  Similarity=0.414  Sum_probs=42.9

Q ss_pred             CccEEecC-chHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         58 IVPLLSDS-THAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        58 ~fpllsD~-~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .+|++.|. +....++||..-      .| .||| ++|+|+|.- |+.|.+=+.+|+.+.|++.+
T Consensus       182 ~~pi~vD~mdN~~~~~YgA~P------eR-lyIi-~~gkv~Y~G-g~GP~~y~~~e~r~~L~~~~  237 (237)
T PF00837_consen  182 QCPIVVDTMDNNFNKAYGALP------ER-LYII-QDGKVVYKG-GPGPFGYSPEELREWLEKYK  237 (237)
T ss_pred             CCCEEEEccCCHHHHHhCCCc------ce-EEEE-ECCEEEEeC-CCCCCcCCHHHHHHHHHhcC
Confidence            89999996 999999999883      23 5666 599999874 34456668899999988753

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=95.32  E-value=0.18  Score=40.36  Aligned_cols=83  Identities=17%  Similarity=0.295  Sum_probs=54.4

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      +|..+.|-++.+.     +..|+.|++||.|..             .      +|  .||--- ++...+..+|+..   
T Consensus       157 ~C~~~aPil~~fa-----~~yg~~v~~VS~DG~-------------~------~p--~fp~~~-~d~gqa~~l~v~~---  206 (248)
T PRK13703        157 IDGQLAQVINDFR-----DTYGLSVIPVSVDGV-------------I------NP--LLPDSR-TDQGQAQRLGVKY---  206 (248)
T ss_pred             hhHHHHHHHHHHH-----HHhCCeEEEEecCCC-------------C------CC--CCCCCc-cChhHHHhcCCcc---
Confidence            4778888887776     245899999998852             1      11  344321 2334457888873   


Q ss_pred             CCcceEEEEECCCC-cEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         81 GHSLRAYYIIDKRG-YLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        81 g~~~p~tfIID~dG-~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                         .|++|+++++. ++.-+..|.++    .+++.+.|...
T Consensus       207 ---~PAl~Lv~~~t~~~~pv~~G~iS----~deL~~Ri~~v  240 (248)
T PRK13703        207 ---FPALMLVDPKSGSVRPLSYGFIT----QDDLAKRFLNV  240 (248)
T ss_pred             ---cceEEEEECCCCcEEEEeeccCC----HHHHHHHHHHH
Confidence               69999999995 66555556543    67777665443

>PRK09381 trxA thioredoxin; Provisional

Probab=95.31  E-value=0.25  Score=33.31  Aligned_cols=48  Identities=17%  Similarity=0.297  Sum_probs=35.7

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      +-.|....+++.|++.      ..|+++++ ++|+++....|..+    .+++...|+.
T Consensus        59 vd~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~i~~  106 (109)
T PRK09381         59 LNIDQNPGTAPKYGIR------GIPTLLLF-KNGEVAATKVGALS----KGQLKEFLDA  106 (109)
T ss_pred             EECCCChhHHHhCCCC------cCCEEEEE-eCCeEEEEecCCCC----HHHHHHHHHH
Confidence            4466678888999987      47998888 79999988877643    5666666554

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=95.16  E-value=0.19  Score=33.18  Aligned_cols=35  Identities=6%  Similarity=0.063  Sum_probs=26.9

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecC
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDI  104 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~  104 (145)
                      .|....+++.|++.      ..|+.+++ ++|+++..+.|..
T Consensus        59 ~~~~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G~~   93 (102)
T cd03005          59 CTQHRELCSEFQVR------GYPTLLLF-KDGEKVDKYKGTR   93 (102)
T ss_pred             CCCChhhHhhcCCC------cCCEEEEE-eCCCeeeEeeCCC
Confidence            44566788889887      47999999 7898887777764

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex

Probab=94.91  E-value=0.33  Score=38.80  Aligned_cols=44  Identities=16%  Similarity=0.201  Sum_probs=33.9

Q ss_pred             CccEEecC--chHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCC
Q psy17183         58 IVPLLSDS--THAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQ  105 (145)
Q Consensus        58 ~fpllsD~--~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~  105 (145)
                      .|-++.+.  .-.+-+.+|+....    .-.+||||++|+|||.-.|...
T Consensus       193 ~Yf~~~~~~~~~~iRe~Lgi~N~~----~GYvyLVD~~grIRWagsG~At  238 (252)
T PF05176_consen  193 RYFIVYRGQLSDDIREALGINNSY----VGYVYLVDPNGRIRWAGSGPAT  238 (252)
T ss_pred             eEEEEeCCcccHHHHHHhCCCCCC----cCeEEEECCCCeEEeCccCCCC
Confidence            56555544  67889999998753    3478999999999998877643

A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=94.83  E-value=0.47  Score=31.43  Aligned_cols=44  Identities=16%  Similarity=0.249  Sum_probs=30.8

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHH
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE  118 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~  118 (145)
                      .|....+++.|++.      ..|+++++ ++|++ ..+.|.    ++.+++.+.|+
T Consensus        57 ~~~~~~~~~~~~i~------~~Pt~~~~-~~g~~-~~~~G~----~~~~~l~~~i~  100 (101)
T cd02994          57 VTQEPGLSGRFFVT------ALPTIYHA-KDGVF-RRYQGP----RDKEDLISFIE  100 (101)
T ss_pred             ccCCHhHHHHcCCc------ccCEEEEe-CCCCE-EEecCC----CCHHHHHHHHh
Confidence            45566788889887      47999887 88986 445554    45677766654

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>KOG4498|consensus

Probab=94.75  E-value=0.14  Score=39.31  Aligned_cols=104  Identities=15%  Similarity=0.102  Sum_probs=70.2

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCcc--
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLS--   78 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~--   78 (145)
                      .|..++.+|.+..  +-+++.|+.+|+|-..+......|...   ..      .   .=.+..|++..+-..++....  
T Consensus        65 lCR~~aadLa~l~--~~ld~~Gv~Li~vg~g~~~~~~~f~~q---~~------f---~gevylD~~~~~Y~~le~k~~~~  130 (197)
T KOG4498|consen   65 LCREEAADLASLK--DLLDELGVVLIAVGPGSHVQFEDFWDQ---TY------F---SGEVYLDPHRGFYKPLEFKRAEM  130 (197)
T ss_pred             EeHHHHHHHHHHH--HHHHHhCCEEEEEeccceeecchhhcc---cC------c---ceeEEEcCccceechhhhhcccc
Confidence            3899999999984  688999999999976555445555442   21      2   335777776665544443221  


Q ss_pred             ----------------------C--CCCcceEEEEECCCCcEEEEEeecCCCC-CCHHHHHHHHH
Q psy17183         79 ----------------------S--AGHSLRAYYIIDKRGYLRSMNVSDIQVG-RNLKEILRQVE  118 (145)
Q Consensus        79 ----------------------~--~g~~~p~tfIID~dG~I~~~~~~~~~~~-~~~~ell~~i~  118 (145)
                                            .  .+.....++++-+.|+|.+.+......+ .+.+++++++.
T Consensus       131 g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~~gD~~~i~~Vl~v~~  195 (197)
T KOG4498|consen  131 GFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVDKETGDHVPIDSVLQVVG  195 (197)
T ss_pred             cccccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCCeEEEEEecCCCCCCcCHHHHHHHhh
Confidence                                  0  1235788999988889999998654322 26888888764

>KOG2501|consensus

Probab=94.44  E-value=0.21  Score=37.27  Aligned_cols=82  Identities=17%  Similarity=0.175  Sum_probs=54.2

Q ss_pred             hhHHHHHHHHHhhhhhhhcC--CcEEEEEeCCC-HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCcc
Q psy17183          2 DTKIACDVLKLVRKEILIVS--PFQIIAVSVDS-HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLS   78 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~--gv~vi~VS~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~   78 (145)
                      |..=.|.+.+.|  ++.++.  .++||-||.|. .++..++...   +.  |  ++.  -.|+-.|...+..+.|++.  
T Consensus        48 CR~FTP~Lk~fY--e~l~~~~~~fEVvfVS~D~~~~~~~~y~~~---~~--~--~W~--~iPf~d~~~~~l~~ky~v~--  114 (157)
T KOG2501|consen   48 CRDFTPILKDFY--EELKDNAAPFEVVFVSSDRDEESLDEYMLE---HH--G--DWL--AIPFGDDLIQKLSEKYEVK--  114 (157)
T ss_pred             hhhCCchHHHHH--HHHHhcCCceEEEEEecCCCHHHHHHHHHh---cC--C--CeE--EecCCCHHHHHHHHhcccC--
Confidence            333345666777  455543  48899999985 4455666554   43  1  110  2344455678889999988  


Q ss_pred             CCCCcceEEEEECCCCcEEEEE
Q psy17183         79 SAGHSLRAYYIIDKRGYLRSMN  100 (145)
Q Consensus        79 ~~g~~~p~tfIID~dG~I~~~~  100 (145)
                          .+|+-.++.++|+++...
T Consensus       115 ----~iP~l~i~~~dG~~v~~d  132 (157)
T KOG2501|consen  115 ----GIPALVILKPDGTVVTED  132 (157)
T ss_pred             ----cCceeEEecCCCCEehHh
Confidence                479999999999887554

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=94.11  E-value=0.072  Score=35.82  Aligned_cols=42  Identities=14%  Similarity=0.155  Sum_probs=32.7

Q ss_pred             chHHHHHhCCCccCCCCcceEEEEECC-CCcEEEEEeecCCCCCCHHHHHHHH
Q psy17183         66 THAISKTYGCYLSSAGHSLRAYYIIDK-RGYLRSMNVSDIQVGRNLKEILRQV  117 (145)
Q Consensus        66 ~~~va~~yg~~~~~~g~~~p~tfIID~-dG~I~~~~~~~~~~~~~~~ell~~i  117 (145)
                      ..+++++|++.      ..|+++++++ +|++.....|..    +.+++.+.|
T Consensus        61 ~~~~~~~~~i~------~~Pti~~~~~~~g~~~~~~~G~~----~~~~l~~~l  103 (104)
T cd02953          61 ITALLKRFGVF------GPPTYLFYGPGGEPEPLRLPGFL----TADEFLEAL  103 (104)
T ss_pred             HHHHHHHcCCC------CCCEEEEECCCCCCCCccccccc----CHHHHHHHh
Confidence            35788889887      4799999999 999988877764    356666655

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>KOG1651|consensus

Probab=93.73  E-value=0.58  Score=35.31  Aligned_cols=84  Identities=17%  Similarity=0.169  Sum_probs=50.7

Q ss_pred             HHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEe--cCchH----HH
Q psy17183          5 IACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLS--DSTHA----IS   70 (145)
Q Consensus         5 e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~~~~~~~~~~~~~~~~~~~~~~~fplls--D~~~~----va   70 (145)
                      +-..|..++  ++|+.+|++|+|.-++        +-+....|+..  +.+      .   .|||..  |-+|.    +-
T Consensus        52 ~Y~~l~~L~--~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~--r~~------~---~f~if~KidVNG~~~~Ply  118 (171)
T KOG1651|consen   52 QYTELNELY--EKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKV--RYG------A---EFPIFQKIDVNGDNADPLY  118 (171)
T ss_pred             cchhHHHHH--HHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHh--ccC------C---CCccEeEEecCCCCCchHH
Confidence            556788888  6999999999999654        23345566653  344      5   788774  33333    22


Q ss_pred             HHhCCCcc-CCCCc---ceEEEEECCCCcEEEEEe
Q psy17183         71 KTYGCYLS-SAGHS---LRAYYIIDKRGYLRSMNV  101 (145)
Q Consensus        71 ~~yg~~~~-~~g~~---~p~tfIID~dG~I~~~~~  101 (145)
                      +-+.-... ..|..   +=+-|+||++|.|+.++-
T Consensus       119 kfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~  153 (171)
T KOG1651|consen  119 KFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS  153 (171)
T ss_pred             HHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence            21111100 00111   224699999999998874

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=93.73  E-value=0.18  Score=35.84  Aligned_cols=48  Identities=10%  Similarity=0.114  Sum_probs=37.6

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +=.|.+.++|+.||+.      ..|+.+++ ++|+++. +.|.    ++.+++.+.|+++
T Consensus        71 VD~d~~~~La~~~~I~------~iPTl~lf-k~G~~v~-~~G~----~~~~~l~~~l~~~  118 (120)
T cd03065          71 VDSKKDAKVAKKLGLD------EEDSIYVF-KDDEVIE-YDGE----FAADTLVEFLLDL  118 (120)
T ss_pred             EeCCCCHHHHHHcCCc------cccEEEEE-ECCEEEE-eeCC----CCHHHHHHHHHHH
Confidence            4477889999999998      47999999 7999875 6665    3467888887765

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=93.46  E-value=0.25  Score=33.92  Aligned_cols=45  Identities=20%  Similarity=0.275  Sum_probs=34.8

Q ss_pred             chHHHHHhCCCccCCCCcceEEEEECC-CCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         66 THAISKTYGCYLSSAGHSLRAYYIIDK-RGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        66 ~~~va~~yg~~~~~~g~~~p~tfIID~-dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      ..++++.|++.      ..|+.++||+ +|++++...|..+    .++++..|+..
T Consensus        65 ~~~~~~~~~~~------~~P~~~~i~~~~g~~l~~~~G~~~----~~~f~~~L~~~  110 (114)
T cd02958          65 GQRFLQSYKVD------KYPHIAIIDPRTGEVLKVWSGNIT----PEDLLSQLIEF  110 (114)
T ss_pred             HHHHHHHhCcc------CCCeEEEEeCccCcEeEEEcCCCC----HHHHHHHHHHH
Confidence            34778888876      3799999999 8999998888754    56777766543

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.30  E-value=0.41  Score=37.80  Aligned_cols=62  Identities=15%  Similarity=0.072  Sum_probs=50.3

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCY   76 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~   76 (145)
                      +|+.-+..+--..  .-+...++.+++||--+.+...+++.+   .+      +   .||.+|...+.+-+.|.+.
T Consensus        93 gCS~laD~~dGa~--~HL~~~dv~lv~VsRAPl~~l~~~k~r---mG------W---~f~w~Ss~~s~Fn~Df~vs  154 (247)
T COG4312          93 GCSFLADHWDGAV--AHLEHHDVTLVAVSRAPLEELVAYKRR---MG------W---QFPWVSSTDSDFNRDFQVS  154 (247)
T ss_pred             chhhHHhhhhhhh--hhHhhcCceEEEEecCcHHHHHHHHHh---cC------C---cceeEeccCcccccccccc
Confidence            4666666664444  257788999999999999999999886   66      9   9999999999999999764

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=93.06  E-value=0.75  Score=31.05  Aligned_cols=40  Identities=13%  Similarity=0.194  Sum_probs=27.5

Q ss_pred             CchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHH
Q psy17183         65 STHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQ  116 (145)
Q Consensus        65 ~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~  116 (145)
                      ....++++|++.      ..|++++++ +| .+..+.|.    ++.+++.+.
T Consensus        60 ~~~~l~~~~~V~------~~PT~~lf~-~g-~~~~~~G~----~~~~~l~~f   99 (100)
T cd02999          60 IKPSLLSRYGVV------GFPTILLFN-ST-PRVRYNGT----RTLDSLAAF   99 (100)
T ss_pred             CCHHHHHhcCCe------ecCEEEEEc-CC-ceeEecCC----CCHHHHHhh
Confidence            356789999987      479999996 45 55566665    445666543

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=92.79  E-value=0.34  Score=35.14  Aligned_cols=86  Identities=13%  Similarity=0.140  Sum_probs=55.8

Q ss_pred             hhhcCCcEEEEEeCCC---HHH------HHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcceEE
Q psy17183         17 ILIVSPFQIIAVSVDS---HLA------HLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAY   87 (145)
Q Consensus        17 ~f~~~gv~vi~VS~D~---~~~------~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~p~t   87 (145)
                      +....|..|+-++.|+   +++      ..+.++.   +.  +. ++  +-+-+=.|.+.+++..||+.      ..|+.
T Consensus        30 ~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e---~~--~~-~v--~~akVDiD~~~~LA~~fgV~------siPTL   95 (132)
T PRK11509         30 WLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLRE---FP--DY-TW--QVAIADLEQSEAIGDRFGVF------RFPAT   95 (132)
T ss_pred             HHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHH---hc--CC-ce--EEEEEECCCCHHHHHHcCCc------cCCEE
Confidence            3456677888887774   222      2333333   32  10 02  02334467899999999998      47998


Q ss_pred             EEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         88 YIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        88 fIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      +++ ++|+++....|..+    -+++++.|+++-
T Consensus        96 l~F-kdGk~v~~i~G~~~----k~~l~~~I~~~L  124 (132)
T PRK11509         96 LVF-TGGNYRGVLNGIHP----WAELINLMRGLV  124 (132)
T ss_pred             EEE-ECCEEEEEEeCcCC----HHHHHHHHHHHh
Confidence            888 99999999888643    467777766543

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=92.58  E-value=0.97  Score=31.82  Aligned_cols=45  Identities=18%  Similarity=0.163  Sum_probs=34.3

Q ss_pred             HHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         68 AISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        68 ~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .+.+.|++..     ..-+.++|++||.|...+..+.    +.+++.+.|+++.
T Consensus        68 ~lr~~l~~~~-----~~f~~vLiGKDG~vK~r~~~p~----~~~~lf~~ID~MP  112 (118)
T PF13778_consen   68 ALRKRLRIPP-----GGFTVVLIGKDGGVKLRWPEPI----DPEELFDTIDAMP  112 (118)
T ss_pred             HHHHHhCCCC-----CceEEEEEeCCCcEEEecCCCC----CHHHHHHHHhCCc
Confidence            6777787763     1357899999999998765543    5899999998864

>KOG2792|consensus

Probab=91.74  E-value=0.34  Score=39.05  Aligned_cols=102  Identities=14%  Similarity=0.156  Sum_probs=61.0

Q ss_pred             ChhHHHHHHHHHhhhhhhhc-CCcE--EEEEeCC----CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHh
Q psy17183          1 MDTKIACDVLKLVRKEILIV-SPFQ--IIAVSVD----SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTY   73 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~-~gv~--vi~VS~D----~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~y   73 (145)
                      .|-.|+-.+.+..  +++.+ .|+.  -|.||+|    +++..+++.+.   .+ +.+  +   .+.=-.+.=.+++++|
T Consensus       154 ICPdELeKm~~~V--d~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~e---F~-pkl--l---GLTGT~eqvk~vak~y  222 (280)
T KOG2792|consen  154 ICPDELEKMSAVV--DEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSE---FH-PKL--L---GLTGTTEQVKQVAKKY  222 (280)
T ss_pred             cChHHHHHHHHHH--HHHhccCCCCccceEEEeCcccCCHHHHHHHHHh---cC-hhh--h---cccCCHHHHHHHHHHh
Confidence            4888999998888  56654 3332  4777776    57778887765   32 111  2   2222244567899999


Q ss_pred             CCCccC----CC---C--cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHH
Q psy17183         74 GCYLSS----AG---H--SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQV  117 (145)
Q Consensus        74 g~~~~~----~g---~--~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i  117 (145)
                      .|+.+.    .+   +  -.-..|+|||+|..+-.+ |-   .++.+++.+.|
T Consensus       223 RVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~-Gr---N~~~~~~~~~I  271 (280)
T KOG2792|consen  223 RVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYY-GR---NYDADELADSI  271 (280)
T ss_pred             EEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhh-cc---cCCHHHHHHHH
Confidence            998642    01   1  123579999999876432 22   23455655544

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=91.62  E-value=1.9  Score=31.78  Aligned_cols=40  Identities=8%  Similarity=0.027  Sum_probs=27.5

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeec
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSD  103 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~  103 (145)
                      .|...+++++|++.....=...|+.++. ++|+.+....|.
T Consensus        88 vd~~~~la~~~~V~~~~~v~~~PT~ilf-~~Gk~v~r~~G~  127 (152)
T cd02962          88 IGRFPNVAEKFRVSTSPLSKQLPTIILF-QGGKEVARRPYY  127 (152)
T ss_pred             CCCCHHHHHHcCceecCCcCCCCEEEEE-ECCEEEEEEecc
Confidence            5667788888887621000126988888 699999888873

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=91.44  E-value=1.8  Score=28.97  Aligned_cols=45  Identities=9%  Similarity=0.155  Sum_probs=30.2

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      .+....+++.|++.      ..|+.++++ +|. ...+.|.    ++.+++.+.+++
T Consensus        58 ~~~~~~~~~~~~I~------~~Pt~~l~~-~~~-~~~~~G~----~~~~~l~~~~~~  102 (104)
T cd03000          58 ATAYSSIASEFGVR------GYPTIKLLK-GDL-AYNYRGP----RTKDDIVEFANR  102 (104)
T ss_pred             CccCHhHHhhcCCc------cccEEEEEc-CCC-ceeecCC----CCHHHHHHHHHh
Confidence            34467888999987      479999994 443 3444453    346777776665

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=91.38  E-value=1.5  Score=29.25  Aligned_cols=42  Identities=14%  Similarity=0.181  Sum_probs=29.0

Q ss_pred             chHHHHHhCCCccCCCCcceEEEEECCCCc----EEEEEeecCCCCCCHHHHHHHH
Q psy17183         66 THAISKTYGCYLSSAGHSLRAYYIIDKRGY----LRSMNVSDIQVGRNLKEILRQV  117 (145)
Q Consensus        66 ~~~va~~yg~~~~~~g~~~p~tfIID~dG~----I~~~~~~~~~~~~~~~ell~~i  117 (145)
                      ..++++.|++.      ..|+.+++++.+.    +...+.|.    ++.+++.+.|
T Consensus        63 ~~~~~~~~~i~------~~Pt~~~~~~~~~~~~~~~~~~~G~----~~~~~l~~fi  108 (109)
T cd03002          63 NKPLCGKYGVQ------GFPTLKVFRPPKKASKHAVEDYNGE----RSAKAIVDFV  108 (109)
T ss_pred             cHHHHHHcCCC------cCCEEEEEeCCCcccccccccccCc----cCHHHHHHHh
Confidence            67889999987      3799999988873    33333333    4567776655

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=91.35  E-value=2  Score=34.09  Aligned_cols=100  Identities=13%  Similarity=0.105  Sum_probs=61.2

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCc---EEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEe-c-CchHHHHHhCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPF---QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLS-D-STHAISKTYGC   75 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv---~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fplls-D-~~~~va~~yg~   75 (145)
                      .|-.++..|..+.  .+|+..|+   .++.||--...+...+.+- +++       + +..|||.. | ..-.|-..++.
T Consensus        40 ~c~~qa~~le~Lr--~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l-~~r-------~-~~~ipVyqq~~~q~dvW~~L~G  108 (238)
T PF04592_consen   40 FCLLQASRLEDLR--EKLENEGLSNISFMVVNHQGEHSRLKYWEL-KRR-------V-SEHIPVYQQDENQPDVWELLNG  108 (238)
T ss_pred             HHHHHHHHHHHHH--HHHHHCCCCceEEEEEcCCCcchhHHHHHH-HHh-------C-CCCCceecCCccccCHHHHhCC
Confidence            3778888888887  57776654   6788876443333322221 112       3 00499985 3 46677777766


Q ss_pred             CccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         76 YLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        76 ~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      ..       =-.||+|+-|++.|...-+.+. -.+.-+.++|+.
T Consensus       109 ~k-------dD~~iyDRCGrL~~~i~~P~S~-l~~~~ve~Ai~~  144 (238)
T PF04592_consen  109 SK-------DDFLIYDRCGRLTYHIPLPYSF-LQFPYVEAAIKS  144 (238)
T ss_pred             Cc-------CcEEEEeccCcEEEEecCcHHH-hcCHHHHHHHHH
Confidence            53       3679999999999987654332 123455555544

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>PRK10996 thioredoxin 2; Provisional

Probab=90.27  E-value=0.93  Score=32.48  Aligned_cols=47  Identities=13%  Similarity=0.157  Sum_probs=35.3

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|...++++.|++.      ..|+.+++ ++|+++....|..    +.+++.+.|+++
T Consensus        92 ~~~~~~l~~~~~V~------~~Ptlii~-~~G~~v~~~~G~~----~~e~l~~~l~~~  138 (139)
T PRK10996         92 TEAERELSARFRIR------SIPTIMIF-KNGQVVDMLNGAV----PKAPFDSWLNEA  138 (139)
T ss_pred             CCCCHHHHHhcCCC------ccCEEEEE-ECCEEEEEEcCCC----CHHHHHHHHHHh
Confidence            56678999999997      37988777 6999988877764    356677776653

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=90.21  E-value=2.3  Score=28.76  Aligned_cols=45  Identities=16%  Similarity=0.157  Sum_probs=28.6

Q ss_pred             ecC-chHHHH-HhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHH
Q psy17183         63 SDS-THAISK-TYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQ  116 (145)
Q Consensus        63 sD~-~~~va~-~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~  116 (145)
                      +|. ...+++ .|++.      ..|+.++++++++..+.+.|.   .++.+.+...
T Consensus        62 ~d~~~~~~~~~~~~v~------~~Pti~~f~~~~~~~~~y~g~---~~~~~~l~~f  108 (109)
T cd02993          62 ADGEQREFAKEELQLK------SFPTILFFPKNSRQPIKYPSE---QRDVDSLLMF  108 (109)
T ss_pred             CCccchhhHHhhcCCC------cCCEEEEEcCCCCCceeccCC---CCCHHHHHhh
Confidence            444 355665 47876      379999998887766555443   2566666543

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=90.09  E-value=0.9  Score=29.60  Aligned_cols=46  Identities=13%  Similarity=0.204  Sum_probs=34.0

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      .|....+++.|++.      ..|+.+++++++. ...+.|.    .+.+++...|++
T Consensus        55 ~~~~~~~~~~~~i~------~~P~~~~~~~~~~-~~~~~g~----~~~~~l~~~i~~  100 (102)
T TIGR01126        55 ATAEKDLASRFGVS------GFPTIKFFPKGKK-PVDYEGG----RDLEAIVEFVNE  100 (102)
T ss_pred             ccchHHHHHhCCCC------cCCEEEEecCCCc-ceeecCC----CCHHHHHHHHHh
Confidence            56788899999987      3799999988887 4555554    346677776654

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>TIGR01068 thioredoxin thioredoxin

Probab=89.76  E-value=1.2  Score=28.79  Aligned_cols=48  Identities=19%  Similarity=0.271  Sum_probs=35.3

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      +-.|.+..+++.||+.      ..|+.+++ ++|++.....|..    +.+++.+.|++
T Consensus        52 vd~~~~~~~~~~~~v~------~~P~~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~   99 (101)
T TIGR01068        52 LNVDENPDIAAKYGIR------SIPTLLLF-KNGKEVDRSVGAL----PKAALKQLINK   99 (101)
T ss_pred             EECCCCHHHHHHcCCC------cCCEEEEE-eCCcEeeeecCCC----CHHHHHHHHHh
Confidence            3356788889999998      47999999 7888876666653    35677776654

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=89.69  E-value=1  Score=29.85  Aligned_cols=44  Identities=14%  Similarity=0.015  Sum_probs=32.2

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHH
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQV  117 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i  117 (145)
                      .|.+.+++..|++.      ..|+.+|+ ++|+++....|..+    .+++.+.|
T Consensus        53 ~d~~~~l~~~~~v~------~vPt~~i~-~~g~~v~~~~g~~~----~~~~~~~l   96 (97)
T cd02949          53 IDEDQEIAEAAGIM------GTPTVQFF-KDKELVKEISGVKM----KSEYREFI   96 (97)
T ss_pred             CCCCHHHHHHCCCe------eccEEEEE-ECCeEEEEEeCCcc----HHHHHHhh
Confidence            44577899999987      47999999 58999888777543    45555544

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=89.22  E-value=2.3  Score=27.76  Aligned_cols=43  Identities=16%  Similarity=0.325  Sum_probs=30.2

Q ss_pred             ecC-chHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHH
Q psy17183         63 SDS-THAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILR  115 (145)
Q Consensus        63 sD~-~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~  115 (145)
                      .+. ...+++.|++.      ..|+.+++++.|+....+.|.    ++.+++.+
T Consensus        60 ~~~~~~~~~~~~~i~------~~P~~~~~~~~~~~~~~~~g~----~~~~~l~~  103 (105)
T cd02998          60 ADEANKDLAKKYGVS------GFPTLKFFPKGSTEPVKYEGG----RDLEDLVK  103 (105)
T ss_pred             CCCcchhhHHhCCCC------CcCEEEEEeCCCCCccccCCc----cCHHHHHh
Confidence            345 67899999987      479999998887666555443    44566554

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=89.20  E-value=2.9  Score=27.65  Aligned_cols=43  Identities=14%  Similarity=0.288  Sum_probs=29.2

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHH
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEIL  114 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell  114 (145)
                      +=.|....+++.|++.      ..|+.+++ ++|+....+.|.    ++.+++.
T Consensus        56 vd~~~~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G~----~~~~~l~   98 (101)
T cd03003          56 VNCGDDRMLCRSQGVN------SYPSLYVF-PSGMNPEKYYGD----RSKESLV   98 (101)
T ss_pred             EeCCccHHHHHHcCCC------ccCEEEEE-cCCCCcccCCCC----CCHHHHH
Confidence            3356677888999887      37998888 789876554443    3445544

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=88.68  E-value=0.6  Score=41.39  Aligned_cols=46  Identities=15%  Similarity=0.193  Sum_probs=35.5

Q ss_pred             chHHHHHhCCCccCCCCcceEEEEECCCCcEE--EEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         66 THAISKTYGCYLSSAGHSLRAYYIIDKRGYLR--SMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        66 ~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~--~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      ..+++++|++.      ..|+++++|++|+++  ....|..    +.+++++.+++++
T Consensus       523 ~~~l~~~~~v~------g~Pt~~~~~~~G~~i~~~r~~G~~----~~~~f~~~L~~~~  570 (571)
T PRK00293        523 DVALLKHYNVL------GLPTILFFDAQGQEIPDARVTGFM----DAAAFAAHLRQLQ  570 (571)
T ss_pred             hHHHHHHcCCC------CCCEEEEECCCCCCcccccccCCC----CHHHHHHHHHHhc
Confidence            36889999987      379999999999985  4555553    4678888888765

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=88.41  E-value=0.61  Score=29.89  Aligned_cols=44  Identities=9%  Similarity=0.153  Sum_probs=31.0

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHH
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQ  116 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~  116 (145)
                      .|.+..+++.|++.      ..|+.++++++|+....+.+.    .+.+++++.
T Consensus        57 ~~~~~~~~~~~~i~------~~Pt~~~~~~~~~~~~~~~g~----~~~~~i~~~  100 (101)
T cd02961          57 CTANNDLCSEYGVR------GYPTIKLFPNGSKEPVKYEGP----RTLESLVEF  100 (101)
T ss_pred             ccchHHHHHhCCCC------CCCEEEEEcCCCcccccCCCC----cCHHHHHhh
Confidence            45578999999997      379999998887555444443    346666543

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=88.34  E-value=5.1  Score=25.89  Aligned_cols=46  Identities=22%  Similarity=0.328  Sum_probs=34.6

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      .|....+++.|++.      ..|+.+++ ++|+......|.    ++.++|.+.|+.
T Consensus        57 ~~~~~~l~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~  102 (103)
T PF00085_consen   57 CDENKELCKKYGVK------SVPTIIFF-KNGKEVKRYNGP----RNAESLIEFIEK  102 (103)
T ss_dssp             TTTSHHHHHHTTCS------SSSEEEEE-ETTEEEEEEESS----SSHHHHHHHHHH
T ss_pred             hhccchhhhccCCC------CCCEEEEE-ECCcEEEEEECC----CCHHHHHHHHHc
Confidence            44577899999998      37999988 778777766665    357888887763

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=87.29  E-value=1.5  Score=30.63  Aligned_cols=48  Identities=19%  Similarity=0.153  Sum_probs=34.8

Q ss_pred             hHHHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEe
Q psy17183          3 TKIACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLS   63 (145)
Q Consensus         3 t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~~~~~~~~~~~~~~~~~~~~~~~fplls   63 (145)
                      |.+...|++++  ++|+.+|++|+|.-.+        +.+..++|+..  +.+      .   .|||..
T Consensus        36 t~qy~~L~~L~--~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~~--~~~------~---~F~vf~   91 (108)
T PF00255_consen   36 TKQYKQLNELY--EKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCKE--KFG------V---TFPVFE   91 (108)
T ss_dssp             HHHHHHHHHHH--HHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHCH--CHT----------SSEEBS
T ss_pred             ccccHHHHHHH--HHHhcCCeEEEeeehHHhccccCCCHHHHHHHHHh--ccC------C---cccceE
Confidence            55888999999  6999999999999543        35556666664  133      6   898864

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=86.96  E-value=2  Score=30.16  Aligned_cols=39  Identities=10%  Similarity=0.135  Sum_probs=32.5

Q ss_pred             cEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCC
Q psy17183         60 PLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQ  105 (145)
Q Consensus        60 pllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~  105 (145)
                      -+-.|...+++..|++.      ++|+.+++ ++|+++....|..+
T Consensus        66 kVdid~~~~la~~f~V~------sIPTli~f-kdGk~v~~~~G~~~  104 (111)
T cd02965          66 VVGRADEQALAARFGVL------RTPALLFF-RDGRYVGVLAGIRD  104 (111)
T ss_pred             EEECCCCHHHHHHcCCC------cCCEEEEE-ECCEEEEEEeCccC
Confidence            46677888999999998      47988888 89999999888643

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=86.54  E-value=3.8  Score=29.10  Aligned_cols=37  Identities=5%  Similarity=-0.117  Sum_probs=26.9

Q ss_pred             ceEEEEECCCCcEEEEEeecCCC----CCCHHHHHHHHHhc
Q psy17183         84 LRAYYIIDKRGYLRSMNVSDIQV----GRNLKEILRQVEAF  120 (145)
Q Consensus        84 ~p~tfIID~dG~I~~~~~~~~~~----~~~~~ell~~i~~l  120 (145)
                      .|+++++|++|++++...+-.+.    +..+.++++.|+.+
T Consensus        81 ~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (124)
T cd02955          81 WPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIREL  121 (124)
T ss_pred             CCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHHH
Confidence            69999999999999988654221    23567777776543

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>KOG0910|consensus

Probab=84.47  E-value=2  Score=31.88  Aligned_cols=51  Identities=12%  Similarity=0.209  Sum_probs=38.5

Q ss_pred             ccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         59 VPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        59 fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      |.+=.|...+++..|++.      +.|+++++ ++|..+-..+|..+    .+.+...|+++
T Consensus        97 ~kvdtD~~~ela~~Y~I~------avPtvlvf-knGe~~d~~vG~~~----~~~l~~~i~k~  147 (150)
T KOG0910|consen   97 YKVDTDEHPELAEDYEIS------AVPTVLVF-KNGEKVDRFVGAVP----KEQLRSLIKKF  147 (150)
T ss_pred             EEEccccccchHhhccee------eeeEEEEE-ECCEEeeeecccCC----HHHHHHHHHHH
Confidence            345578889999999998      58999999 89999888887654    45555555544

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=83.80  E-value=2.1  Score=28.40  Aligned_cols=46  Identities=4%  Similarity=-0.061  Sum_probs=32.4

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHH
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILR  115 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~  115 (145)
                      +=.|...++++.|++.      ..|+.+++.+.|+....+.|...   +.+++.+
T Consensus        57 vd~~~~~~~~~~~~i~------~~Pt~~~~~~g~~~~~~~~G~~~---~~~~l~~  102 (104)
T cd03004          57 VDCQKYESLCQQANIR------AYPTIRLYPGNASKYHSYNGWHR---DADSILE  102 (104)
T ss_pred             EECCchHHHHHHcCCC------cccEEEEEcCCCCCceEccCCCC---CHHHHHh
Confidence            3356678899999987      47999999766587777766532   2455554

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=83.79  E-value=2.8  Score=27.16  Aligned_cols=43  Identities=14%  Similarity=0.258  Sum_probs=30.8

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHH
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQV  117 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i  117 (145)
                      .+...++++.|++.      ..|+.+++ ++|+++....|..     .+++.+.|
T Consensus        54 ~~~~~~~~~~~~i~------~~Pt~~~~-~~g~~~~~~~g~~-----~~~l~~~~   96 (97)
T cd02984          54 AEELPEISEKFEIT------AVPTFVFF-RNGTIVDRVSGAD-----PKELAKKV   96 (97)
T ss_pred             cccCHHHHHhcCCc------cccEEEEE-ECCEEEEEEeCCC-----HHHHHHhh
Confidence            34567889999987      37998888 5899988877752     35555544

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=83.71  E-value=2.3  Score=28.53  Aligned_cols=45  Identities=11%  Similarity=0.206  Sum_probs=32.2

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEE-EEEeecCCCCCCHHHHHHH
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLR-SMNVSDIQVGRNLKEILRQ  116 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~-~~~~~~~~~~~~~~ell~~  116 (145)
                      +=+|...+++++||+.      ..|+.++. ++|++. ..+.|.    ++.+++...
T Consensus        62 vd~d~~~~l~~~~~v~------~~Ptl~~~-~~g~~~~~~~~g~----~~~~~l~~f  107 (108)
T cd02996          62 VDCDKESDIADRYRIN------KYPTLKLF-RNGMMMKREYRGQ----RSVEALAEF  107 (108)
T ss_pred             EECCCCHHHHHhCCCC------cCCEEEEE-eCCcCcceecCCC----CCHHHHHhh
Confidence            4478889999999998      47999999 789853 333333    556766654

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=81.62  E-value=2.7  Score=29.64  Aligned_cols=54  Identities=13%  Similarity=0.119  Sum_probs=38.4

Q ss_pred             ccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCC------CCCHHHHHHHHHh
Q psy17183         59 VPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQV------GRNLKEILRQVEA  119 (145)
Q Consensus        59 fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~------~~~~~ell~~i~~  119 (145)
                      +-+=.|...++++.||+.      ..|+.+++ ++|+++....|..+.      -.+-+++++.++-
T Consensus        50 ~kVDvD~~~~la~~~~V~------~iPTf~~f-k~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~  109 (114)
T cd02954          50 YLVDIDEVPDFNKMYELY------DPPTVMFF-FRNKHMKIDLGTGNNNKINWVFEDKQEFIDIIET  109 (114)
T ss_pred             EEEECCCCHHHHHHcCCC------CCCEEEEE-ECCEEEEEEcCCCCCceEEEecCcHHHHHHHHHH
Confidence            445577899999999998      47998888 899999999875321      1234555555543

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family

Probab=81.40  E-value=15  Score=25.60  Aligned_cols=67  Identities=18%  Similarity=0.113  Sum_probs=50.6

Q ss_pred             HHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcc
Q psy17183          5 IACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSL   84 (145)
Q Consensus         5 e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~   84 (145)
                      -...++++.  +++++.+..=+.||+++.....+..+-   -        |  ..+++-....++++.+|+..      +
T Consensus        36 S~~WL~~~~--~~L~~l~AvGlVVnV~t~~~l~~Lr~l---a--------p--gl~l~P~sgddLa~rL~l~h------Y   94 (105)
T TIGR03765        36 SRQWLQQNA--AALKSLGAVGLVVNVETAAALQRLRAL---A--------P--GLPLLPVSGDDLAERLGLRH------Y   94 (105)
T ss_pred             HHHHHHHHH--HHHHHCCCeEEEEecCCHHHHHHHHHH---c--------C--CCcccCCCHHHHHHHhCCCc------c
Confidence            345677777  689999999999999998888776553   1        1  56777778889999998862      2


Q ss_pred             eEEEEECCCC
Q psy17183         85 RAYYIIDKRG   94 (145)
Q Consensus        85 p~tfIID~dG   94 (145)
                      |  ++|..+|
T Consensus        95 P--vLit~tg  102 (105)
T TIGR03765        95 P--VLITATG  102 (105)
T ss_pred             c--EEEecCc
Confidence            3  6777776

This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.

>KOG0907|consensus

Probab=81.07  E-value=15  Score=25.30  Aligned_cols=45  Identities=13%  Similarity=0.209  Sum_probs=34.0

Q ss_pred             ecCc--hHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         63 SDST--HAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        63 sD~~--~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      .|-+  .++++.|++.      .+|+..++ ++|..+-..+|..     .+++.+.+.+
T Consensus        58 vdvde~~~~~~~~~V~------~~PTf~f~-k~g~~~~~~vGa~-----~~~l~~~i~~  104 (106)
T KOG0907|consen   58 VDVDELEEVAKEFNVK------AMPTFVFY-KGGEEVDEVVGAN-----KAELEKKIAK  104 (106)
T ss_pred             EecccCHhHHHhcCce------EeeEEEEE-ECCEEEEEEecCC-----HHHHHHHHHh
Confidence            4444  8889999988      47998888 9999998888864     3566666654

>PHA02278 thioredoxin-like protein

Probab=81.05  E-value=5.1  Score=27.35  Aligned_cols=31  Identities=16%  Similarity=0.087  Sum_probs=25.9

Q ss_pred             hHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecC
Q psy17183         67 HAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDI  104 (145)
Q Consensus        67 ~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~  104 (145)
                      .++++.|++.      ..|+.+++ ++|+++....|..
T Consensus        62 ~~l~~~~~I~------~iPT~i~f-k~G~~v~~~~G~~   92 (103)
T PHA02278         62 EKAVKLFDIM------STPVLIGY-KDGQLVKKYEDQV   92 (103)
T ss_pred             HHHHHHCCCc------cccEEEEE-ECCEEEEEEeCCC
Confidence            5799999998      47988888 8899999888864

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=80.48  E-value=12  Score=26.28  Aligned_cols=30  Identities=13%  Similarity=0.134  Sum_probs=21.3

Q ss_pred             cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHH
Q psy17183         83 SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQ  116 (145)
Q Consensus        83 ~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~  116 (145)
                      ..|+.+++ ++|+++....|...   ..+++.+.
T Consensus        90 ~~PT~v~~-k~Gk~v~~~~G~~~---~~~~l~~~  119 (122)
T TIGR01295        90 GTPTFVHI-TDGKQVSVRCGSST---TAQELQDI  119 (122)
T ss_pred             CCCEEEEE-eCCeEEEEEeCCCC---CHHHHHHH
Confidence            36999988 99999998888632   24455443

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	145
3qpm_A	240	Crystal Structure Of Peroxiredoxin Prx4 From Pseudo		3e-25
2pn8_A	211	Crystal Structure Of Human Peroxiredoxin 4 (Thiored		4e-25
3tjf_A	254	Crystal Structure Of Human Peroxiredoxin Iv C51a Mu		6e-25
3tks_A	246	Crystal Structure Of Full-Length Human Peroxiredoxi		6e-25
3tkr_A	246	Crystal Structure Of Full-Length Human Peroxiredoxi		7e-25
3tjb_A	254	Crystal Structure Of Wild-Type Human Peroxiredoxin		7e-25
3tkp_A	246	Crystal Structure Of Full-Length Human Peroxiredoxi		7e-25
3tjj_A	254	Crystal Structure Of Human Peroxiredoxin Iv C245a M		7e-24
3tjk_A	254	Crystal Structure Of Human Peroxiredoxin Iv C245a M		7e-24
1qq2_A	199	Crystal Structure Of A Mammalian 2-Cys Peroxiredoxi		2e-22
2z9s_A	199	Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXI		3e-22
3zvj_A	219	Crystal Structure Of High Molecular Weight (Hmw) Fo		1e-21
1zye_A	220	Crystal Strucutre Analysis Of Bovine Mitochondrial		1e-21
3tue_A	219	The Structure Of Tryparedoxin Peroxidase I From Lei		1e-21
3ztl_A	222	Crystal Structure Of Decameric Form Of Peroxiredoxi		1e-21
3sbc_A	216	Crystal Structure Of Saccharomyces Cerevisiae Tsa1c		1e-21
3zvj_D	219	Crystal Structure Of High Molecular Weight (Hmw) Fo		2e-21
2rii_A	199	Crystal Structure Of Human Peroxiredoxin I In Compl		8e-21
1qmv_A	197	Thioredoxin Peroxidase B From Red Blood Cells Lengt		4e-20
3hy2_A	206	Crystal Structure Of Sulfiredoxin In Complex With P		9e-20
1uul_A	202	Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cr		3e-19
1e2y_A	188	Tryparedoxin Peroxidase From Crithidia Fasciculata		4e-19
2c0d_A	221	Structure Of The Mitochondrial 2-Cys Peroxiredoxin		2e-16
2h66_A	213	The Crystal Structure Of Plasmodium Vivax 2-Cys Per		3e-14
2h01_A	192	Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I		8e-14
1zof_A	198	Crystal Structure Of Alkyl Hydroperoxide-Reductase		4e-13
2e2m_A	250	Crystal Structure Of Archaeal Peroxiredoxin, Thiore		2e-11
2zct_A	249	Oxidation Of Archaeal Peroxiredoxin Involves A Hype		2e-11
3a5w_A	249	Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1		2e-11
2e2g_A	250	Crystal Structure Of Archaeal Peroxiredoxin, Thiore		2e-11
3a2w_A	249	Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Pero		2e-11
3a2v_A	249	Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Comp		2e-11
2cv4_A	250	Crystal Structure Of An Archaeal Peroxiredoxin From		2e-10
1x0r_A	249	Thioredoxin Peroxidase From Aeropyrum Pernix K1 Len		2e-10
2bmx_A	195	Mycobacterium Tuberculosis Ahpc Length = 195		7e-10
1yf1_A	186	Structural And Biochemical Analysis Of The Link Bet		1e-09
1n8j_A	186	Crystal Structure Of Ahpc With Active Site Cysteine		1e-09
1yep_A	186	Structural And Biochemical Analysis Of The Link Bet		1e-09
1yex_A	186	Structural And Biochemical Analysis Of The Link Bet		2e-09
1yf0_A	186	Structural And Biochemical Analysis Of The Link Bet		2e-09
1we0_A	187	Crystal Structure Of Peroxiredoxin (Ahpc) From Amph		7e-09
3emp_A	186	Crystal Structure Of The S-Acetanilide Modified For		2e-08
1prx_A	224	Horf6 A Novel Human Peroxidase Enzyme Length = 224		1e-05
2v2g_A	233	Crystal Structure Of The C45s Mutant Of The Peroxir		4e-05

>pdb|3QPM|A Chain A, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena Crocea Length = 240

Iteration: 1
 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 5/118 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A SVDS   HLAW      T   +  + P KI PLLSD TH ISK YG YL   GH+
Sbjct: 113 EVVACSVDSQFTHLAWI----ITPRKQGGLGPMKI-PLLSDLTHQISKDYGVYLEDQGHT 167
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           LR  +IID++G LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++
Sbjct: 168 LRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSDTI 225

>pdb|2PN8|A Chain A, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin Peroxidase) Length = 211

Iteration: 1
 Score =  110 bits (274), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 5/118 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A SVDS   HLAW  T       +  + P +I PLLSD TH ISK YG YL  +GH+
Sbjct: 84  EVVACSVDSQFTHLAWINT----PRRQGGLGPIRI-PLLSDLTHQISKDYGVYLEDSGHT 138
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++
Sbjct: 139 LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETI 196

>pdb|3TJF|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In Reduced Form Length = 254

Iteration: 1
 Score =  109 bits (272), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 5/118 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A SVDS   HLAW  T       +  + P +I PLLSD TH ISK YG YL  +GH+
Sbjct: 127 EVVACSVDSQFTHLAWINT----PRRQGGLGPIRI-PLLSDLTHQISKDYGVYLEDSGHT 181
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++
Sbjct: 182 LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETI 239

>pdb|3TKS|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In Three Different Redox States Length = 246

Iteration: 1
 Score =  109 bits (272), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 5/118 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A SVDS   HLAW  T       +  + P +I PLLSD TH ISK YG YL  +GH+
Sbjct: 119 EVVACSVDSQFTHLAWINT----PRRQGGLGPIRI-PLLSDLTHQISKDYGVYLEDSGHT 173
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++
Sbjct: 174 LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETI 231

>pdb|3TKR|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 With T118e Mutation Length = 246

Iteration: 1
 Score =  109 bits (272), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 5/118 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A SVDS   HLAW  T       +  + P +I PLLSD TH ISK YG YL  +GH+
Sbjct: 119 EVVACSVDSQFEHLAWINT----PRRQGGLGPIRI-PLLSDLTHQISKDYGVYLEDSGHT 173
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++
Sbjct: 174 LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETI 231

>pdb|3TJB|A Chain A, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv Length = 254

Iteration: 1
 Score =  109 bits (272), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 5/118 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A SVDS   HLAW  T       +  + P +I PLLSD TH ISK YG YL  +GH+
Sbjct: 127 EVVACSVDSQFTHLAWINT----PRRQGGLGPIRI-PLLSDLTHQISKDYGVYLEDSGHT 181
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++
Sbjct: 182 LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETI 239

>pdb|3TKP|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In The Reduced Form Length = 246

Iteration: 1
 Score =  109 bits (272), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 5/118 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A SVDS   HLAW  T       +  + P +I PLLSD TH ISK YG YL  +GH+
Sbjct: 119 EVVACSVDSQFTHLAWINT----PRRQGGLGPIRI-PLLSDLTHQISKDYGVYLEDSGHT 173
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++
Sbjct: 174 LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETI 231

>pdb|3TJJ|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant In Sulfenylated Form Length = 254

Iteration: 1
 Score =  105 bits (263), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 70/118 (59%), Gaps = 5/118 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A SVDS   HLAW  T       +  + P +I PLLSD TH ISK YG YL  +GH+
Sbjct: 127 EVVACSVDSQFTHLAWINT----PRRQGGLGPIRI-PLLSDLTHQISKDYGVYLEDSGHT 181
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D      P  W  G  ++
Sbjct: 182 LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVAPAGWKPGSETI 239

>pdb|3TJK|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant In Reduced Form Length = 254

Iteration: 1
 Score =  105 bits (263), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 70/118 (59%), Gaps = 5/118 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A SVDS   HLAW  T       +  + P +I PLLSD TH ISK YG YL  +GH+
Sbjct: 127 EVVACSVDSQFTHLAWINT----PRRQGGLGPIRI-PLLSDLTHQISKDYGVYLEDSGHT 181
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D      P  W  G  ++
Sbjct: 182 LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVAPAGWKPGSETI 239

>pdb|1QQ2|A Chain A, Crystal Structure Of A Mammalian 2-Cys Peroxiredoxin, Hbp23. Length = 199

Iteration: 1
 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 67/119 (56%), Gaps = 5/119 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           Q+I  SVDSH +HLAW  T       +  + P  I PL+SD    I++ YG   +  G S
Sbjct: 72  QVIGASVDSHFSHLAWINT----PKKQGGLGPMNI-PLVSDPKRTIAQDYGVLKADEGIS 126
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
            R  +IID +G LR + ++D+ VGR++ EILR V+AFQ  D     CP  W  G  ++K
Sbjct: 127 FRGLFIIDDKGILRQITINDLPVGRSVDEILRLVQAFQFTDKHGEVCPAGWKPGSDTIK 185

>pdb|2Z9S|A Chain A, Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXIN I, Cys52ser Mutant Length = 199

Iteration: 1
 Score =  100 bits (249), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           Q+I  SVDSH  HLAW  T       +  + P  I PL+SD    I++ YG   +  G S
Sbjct: 72  QVIGASVDSHFCHLAWINT----PKKQGGLGPMNI-PLVSDPKRTIAQDYGVLKADEGIS 126
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
            R  +IID +G LR + ++D+ VGR++ EILR V+AFQ  D     CP  W  G  ++K
Sbjct: 127 FRGLFIIDDKGILRQITINDLPVGRSVDEILRLVQAFQFTDKHGEVCPAGWKPGSDTIK 185

>pdb|3ZVJ|A Chain A, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 67/120 (55%), Gaps = 5/120 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           Q+IA S DS  +HLAW   L   S     +     +PLL+D    ISK YG +    G++
Sbjct: 102 QVIACSTDSQYSHLAWD-NLDRKSGGLGHMK----IPLLADRKQEISKAYGVFDEEDGNA 156
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKV 143
            R  +IID  G LR + ++D  VGR++ E LR ++AFQ V+     CPVNW  GQ  +KV
Sbjct: 157 FRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAFQFVEKHGEVCPVNWKRGQHGIKV 216

>pdb|1ZYE|A Chain A, Crystal Strucutre Analysis Of Bovine Mitochondrial Peroxiredoxin Iii Length = 220

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 71/119 (59%), Gaps = 5/119 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++AVSVDSH +HLAW  T          +    I  LLSD T  IS+ YG  L   G +
Sbjct: 92  EVVAVSVDSHFSHLAWINT----PRKNGGLGHMNIA-LLSDLTKQISRDYGVLLEGPGLA 146
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           LR  +IID  G ++ ++V+D+ VGR+++E LR V+AFQ V++     P NWT   P++K
Sbjct: 147 LRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVEAHGEVSPANWTPESPTIK 205

>pdb|3TUE|A Chain A, The Structure Of Tryparedoxin Peroxidase I From Leishmania Major Length = 219

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 69/119 (57%), Gaps = 5/119 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A S+DS  AHL WT         +     +  +P+L+D T  I+++YG    S G +
Sbjct: 92  EVLACSIDSEYAHLQWT-----LQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVA 146
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
            R  +IID  G LR + V+D+ VGR+++E+LR +EAFQ V+     CP NW  G P +K
Sbjct: 147 YRGLFIIDPHGMLRQITVNDMPVGRSVEEVLRLLEAFQFVEKHGEVCPANWKKGDPGMK 205

>pdb|3ZTL|A Chain A, Crystal Structure Of Decameric Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 222

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 67/120 (55%), Gaps = 5/120 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           Q+IA S DS  +HLAW   L   S     +     +PLL+D    ISK YG +    G++
Sbjct: 105 QVIACSTDSQYSHLAWD-NLDRKSGGLGHMK----IPLLADRKQEISKAYGVFDEEDGNA 159
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKV 143
            R  +IID  G LR + ++D  VGR++ E LR ++AFQ V+     CPVNW  GQ  +KV
Sbjct: 160 FRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAFQFVEKHGEVCPVNWKRGQHGIKV 219

>pdb|3SBC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s Mutant Protein Length = 216

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 5/119 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           Q++  S DS  + LAWT            + P  I PLL+D+ H++S+ YG  +   G +
Sbjct: 88  QVLFASTDSEYSLLAWTNI----PRKEGGLGPINI-PLLADTNHSLSRDYGVLIEEEGVA 142
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           LR  +IID +G +R + ++D+ VGRN+ E LR VEAFQ  D   T  P NWT G  ++K
Sbjct: 143 LRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAFQWTDKNGTVLPCNWTPGAATIK 201

>pdb|3ZVJ|D Chain D, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 67/120 (55%), Gaps = 5/120 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           Q+IA S DS  +HLAW   L   S     +     +PLL+D    ISK YG +    G++
Sbjct: 102 QVIACSTDSQYSHLAWD-NLDRKSGGLGHMK----IPLLADRKQEISKAYGVFDEEDGNA 156
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKV 143
            R  +IID  G LR + ++D  VGR++ E LR ++AFQ V+     CPVNW  GQ  +KV
Sbjct: 157 FRGLFIIDPNGILRQITLNDKPVGRSVDETLRLLDAFQFVEKHGEVCPVNWKRGQHGIKV 216

>pdb|2RII|A Chain A, Crystal Structure Of Human Peroxiredoxin I In Complex With Sulfiredoxin Length = 199

Iteration: 1
 Score = 95.9 bits (237), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           Q+I  SVDSH  HLAW  T       +  + P  I PL+SD    I++ YG   +  G S
Sbjct: 72  QVIGASVDSHFEHLAWVNT----PKKQGGLGPMNI-PLVSDPKRTIAQDYGVLKADEGIS 126
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
            R  +IID +G LR + V+D+ VGR++ E LR V+AFQ  D      P  W  G  ++K
Sbjct: 127 FRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVSPAGWKPGSDTIK 185

>pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood Cells Length = 197

Iteration: 1
 Score = 93.6 bits (231), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 5/119 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++ VSVDS   HLAW  T          + P  I PLL+D T  +S+ YG   +  G +
Sbjct: 70  EVLGVSVDSQFTHLAWINT----PRKEGGLGPLNI-PLLADVTRRLSEDYGVLKTDEGIA 124
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
            R  +IID +G LR + V+D+ VGR++ E LR V+AFQ  D     CP  W  G  ++K
Sbjct: 125 YRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTIK 183

>pdb|3HY2|A Chain A, Crystal Structure Of Sulfiredoxin In Complex With Peroxiredoxin I And Atp:mg2+ Length = 206

Iteration: 1
 Score = 92.0 bits (227), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           Q+I  SVDSH  HL W  T       +  + P  I PL+SD    I++ YG   +  G S
Sbjct: 72  QVIGASVDSHFEHLEWVNT----PKKQGGLGPMNI-PLVSDPKRTIAQDYGVLKADEGIS 126
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTG 137
            R  +IID +G LR + V+D+ VGR++ E LR V+AFQ  D      P  W  G
Sbjct: 127 FRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVSPAGWKPG 180

>pdb|1UUL|A Chain A, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In The Reduced State Length = 202

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 5/119 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A S+DS  +HLAWT    +    R  +    I P+L+D T  I K+YG      G +
Sbjct: 72  EVLACSMDSEYSHLAWT----SIERKRGGLGQMNI-PILADKTKCIMKSYGVLKEEDGVA 126
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
            R  +IID +  LR + V+D+ VGR++ E LR V+AFQ V+     CP NW  G  ++K
Sbjct: 127 YRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQFVEKHGEVCPANWKPGDKTMK 185

>pdb|1E2Y|A Chain A, Tryparedoxin Peroxidase From Crithidia Fasciculata Length = 188

Iteration: 1
 Score = 90.1 bits (222), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 5/119 (4%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           ++I+ S DS  +HL WT    +    +  + P  I P L+D T AI++ YG     +G +
Sbjct: 72  EVISCSCDSEYSHLQWT----SVDRKKGGLGPXAI-PXLADKTKAIARAYGVLDEDSGVA 126
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
            R  +IID  G LR + ++D  +GRN++E++R VEA Q V+     CP NW  G    K
Sbjct: 127 YRGVFIIDPNGKLRQIIINDXPIGRNVEEVIRLVEALQFVEEHGEVCPANWKKGDAKKK 185

>pdb|2C0D|A Chain A, Structure Of The Mitochondrial 2-Cys Peroxiredoxin From Plasmodium Falciparum Length = 221

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++ +SVDS  +HLAW K +         ++      L+SD    ISK Y   L     +
Sbjct: 92  ELLGISVDSVYSHLAW-KNMPIEKGGIGNVE----FTLVSDINKDISKNYNV-LYDNSFA 145
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           LR  +IIDK G +R   V+D+ +GRN++E+LR +++   VD++   CP+NW  GQ + K
Sbjct: 146 LRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSIIHVDTSGEVCPINWKKGQKAFK 204

>pdb|2H66|A Chain A, The Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin Length = 213

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++  SVDS   HLAW KT  A    +  I   K   LLSD T +ISK Y      +  S
Sbjct: 88  ELLGCSVDSKYTHLAWKKTPLA----KGGIGNIKHT-LLSDITKSISKDYNVLFDDS-VS 141
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           LRA+ +ID  G ++ + V+++ +GR++ EILR ++A Q  +     CP NW  G+ S+K
Sbjct: 142 LRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQHHEKYGDVCPANWQKGKVSMK 200

>pdb|2H01|A Chain A, Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I Length = 192

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++  SVDS   HLAW KT  +    +  I   K   L+SD + +I+++Y    + +  +
Sbjct: 67  ELLGCSVDSKFTHLAWKKTPLS----QGGIGNIKHT-LISDISKSIARSYDVLFNES-VA 120
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           LRA+ +IDK+G ++ + V+++ +GR++ EILR ++A Q  +     CP NW  G+ S+K
Sbjct: 121 LRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYGDVCPANWQKGKESMK 179

>pdb|1ZOF|A Chain A, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc) From Helicobacter Pylori Length = 198

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 23  FQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGH 82
           F +I VS+DS   H AW  T       +  I      P+++D T +IS+ Y      A  
Sbjct: 68  FNVIGVSIDSEQVHFAWKNT----PVEKGGIGQVSF-PMVADITKSISRDYDVLFEEA-I 121
Query: 83  SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           +LR  ++IDK   +R   ++D+ +GRN  E+LR V+A    +     CP  W  G   +K
Sbjct: 122 ALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGDKGMK 181

>pdb|2E2M|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form) Length = 250

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Query: 25  IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGC-YLSSAGHS 83
           +I +SVDS  +H+ W + +      R         P+++D    +++  G  +  SA H+
Sbjct: 71  LIGLSVDSVFSHIKWKEWIERHIGVRIPF------PIIADPQGTVARRLGLLHAESATHT 124
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQ 138
           +R  +I+D RG +R+M    +++GR + EILR V+A +L DS     P +W   +
Sbjct: 125 VRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNNE 179

>pdb|2ZCT|A Chain A, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent Sulfur Intermediate Length = 249

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Query: 25  IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGC-YLSSAGHS 83
           +I +SVDS  +H+ W + +      R         P+++D    +++  G  +  SA H+
Sbjct: 70  LIGLSVDSVFSHIKWKEWIERHIGVRIPF------PIIADPQGTVARRLGLLHAESATHT 123
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQ 138
           +R  +I+D RG +R+M    +++GR + EILR V+A +L DS     P +W   +
Sbjct: 124 VRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNNE 178

>pdb|3A5W|A Chain A, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1 (Reduced Form) Length = 249

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Query: 25  IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGC-YLSSAGHS 83
           +I +SVDS  +H+ W + +      R         P+++D    +++  G  +  SA H+
Sbjct: 70  LIGLSVDSVFSHIKWKEWIERHIGVRIPF------PIIADPQGTVARRLGLLHAESATHT 123
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQ 138
           +R  +I+D RG +R+M    +++GR + EILR V+A +L DS     P +W   +
Sbjct: 124 VRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNNE 178

>pdb|2E2G|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form) Length = 250

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Query: 25  IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGC-YLSSAGHS 83
           +I +SVDS  +H+ W + +      R         P+++D    +++  G  +  SA H+
Sbjct: 71  LIGLSVDSVFSHIKWKEWIERHIGVRIPF------PIIADPQGTVARRLGLLHAESATHT 124
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQ 138
           +R  +I+D RG +R+M    +++GR + EILR V+A +L DS     P +W   +
Sbjct: 125 VRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNNE 179

>pdb|3A2W|A Chain A, Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Peroxide-Bound Form) Length = 249

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Query: 25  IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGC-YLSSAGHS 83
           +I +SVDS  +H+ W + +      R         P+++D    +++  G  +  SA H+
Sbjct: 70  LIGLSVDSVFSHIKWKEWIERHIGVRIPF------PIIADPQGTVARRLGLLHAESATHT 123
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQ 138
           +R  +I+D RG +R+M    +++GR + EILR V+A +L DS     P +W   +
Sbjct: 124 VRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNNE 178

>pdb|3A2V|A Chain A, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed With Hydrogen Peroxide Length = 249

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Query: 25  IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGC-YLSSAGHS 83
           +I +SVDS  +H+ W + +      R         P+++D    +++  G  +  SA H+
Sbjct: 70  LIGLSVDSVFSHIKWKEWIERHIGVRIPF------PIIADPQGTVARRLGLLHAESATHT 123
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQ 138
           +R  +I+D RG +R+M    +++GR + EILR V+A +L DS     P +W   +
Sbjct: 124 VRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNNE 178

>pdb|2CV4|A Chain A, Crystal Structure Of An Archaeal Peroxiredoxin From The Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix K1 Length = 250

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 25  IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGC-YLSSAGHS 83
           +I +SVDS  +H+ W + +      R         P+++D    +++  G  +  SA H+
Sbjct: 71  LIGLSVDSVFSHIKWKEWIERHIGVRIPF------PIIADPQGTVARRLGLLHAESATHT 124
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQ 138
           +R  +I+D RG +R+      ++GR + EILR V+A +L DS     P +W   +
Sbjct: 125 VRGVFIVDARGVIRTXLYYPXELGRLVDEILRIVKALKLGDSLKRAVPADWPNNE 179

>pdb|1X0R|A Chain A, Thioredoxin Peroxidase From Aeropyrum Pernix K1 Length = 249

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 25  IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGC-YLSSAGHS 83
           +I +SVDS  +H+ W + +      R         P+++D    +++  G  +  SA H+
Sbjct: 70  LIGLSVDSVFSHIKWKEWIERHIGVRIPF------PIIADPQGTVARRLGLLHAESATHT 123
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQ 138
           +R  +I+D RG +R+      ++GR + EILR V+A +L DS     P +W   +
Sbjct: 124 VRGVFIVDARGVIRTXLYYPXELGRLVDEILRIVKALKLGDSLKRAVPADWPNNE 178

>pdb|2BMX|A Chain A, Mycobacterium Tuberculosis Ahpc Length = 195

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 17/123 (13%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPL--LSDSTHAISKTYGCYLSSAG 81
           QI+ VS+DS  AH  W          R+  +  K +P   LSD    +S+  G  L++ G
Sbjct: 81  QILGVSIDSEFAHFQW----------RAQHNDLKTLPFPXLSDIKRELSQAAGV-LNADG 129
Query: 82  HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
            + R  +I+D    ++ ++ +   VGRN+ E+LR ++A Q    +D  C  NW  G P++
Sbjct: 130 VADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ----SDELCASNWRKGDPTL 185
Query: 142 KVA 144
Sbjct: 186 DAG 188

>pdb|1YF1|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 9/122 (7%)
Query: 25  IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSL 84
           + +VS D+H  H AW  +    +  + A        ++ D T A+++ +       G + 
Sbjct: 67  VYSVSTDTHFVHKAWHSSSETIAKIKYA--------MIGDPTGALTRNFDNMREDEGLAD 118
Query: 85  RAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQ-CPVNWTTGQPSVKV 143
           RA +++D +G ++++ V+   +GR+  ++LR+++A Q V +   + CP  W  G+ ++  
Sbjct: 119 RATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAP 178
Query: 144 AL 145
           +L
Sbjct: 179 SL 180

>pdb|1N8J|A Chain A, Crystal Structure Of Ahpc With Active Site Cysteine Mutated To Serine (C46s) Length = 186

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 9/122 (7%)
Query: 25  IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSL 84
           + +VS D+H  H AW  +    +  + A        ++ D T A+++ +       G + 
Sbjct: 67  VYSVSTDTHFTHKAWHSSSETIAKIKYA--------MIGDPTGALTRNFDNMREDEGLAD 118
Query: 85  RAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQ-CPVNWTTGQPSVKV 143
           RA +++D +G ++++ V+   +GR+  ++LR+++A Q V +   + CP  W  G+ ++  
Sbjct: 119 RATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAP 178
Query: 144 AL 145
           +L
Sbjct: 179 SL 180

>pdb|1YEP|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Olgomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 9/122 (7%)
Query: 25  IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSL 84
           + +VS D+H  H AW  +    +  + A        ++ D T A+++ +       G + 
Sbjct: 67  VYSVSTDTHFTHKAWHSSSETIAKIKYA--------MIGDPTGALTRNFDNMREDEGLAD 118
Query: 85  RAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQ-CPVNWTTGQPSVKV 143
           RA +++D +G ++++ V+   +GR+  ++LR+++A Q V +   + CP  W  G+ ++  
Sbjct: 119 RATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAP 178
Query: 144 AL 145
           +L
Sbjct: 179 SL 180

>pdb|1YEX|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 9/122 (7%)
Query: 25  IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSL 84
           + +VS D+H  H AW  +    +  + A        ++ D T A+++ +       G + 
Sbjct: 67  VYSVSTDTHFDHKAWHSSSETIAKIKYA--------MIGDPTGALTRNFDNMREDEGLAD 118
Query: 85  RAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQ-CPVNWTTGQPSVKV 143
           RA +++D +G ++++ V+   +GR+  ++LR+++A Q V +   + CP  W  G+ ++  
Sbjct: 119 RATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAP 178
Query: 144 AL 145
           +L
Sbjct: 179 SL 180

>pdb|1YF0|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 9/122 (7%)
Query: 25  IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSL 84
           + +VS D+H  H AW  +    +  + A        ++ D T A+++ +       G + 
Sbjct: 67  VYSVSTDTHFIHKAWHSSSETIAKIKYA--------MIGDPTGALTRNFDNMREDEGLAD 118
Query: 85  RAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQ-CPVNWTTGQPSVKV 143
           RA +++D +G ++++ V+   +GR+  ++LR+++A Q V +   + CP  W  G+ ++  
Sbjct: 119 RATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAP 178
Query: 144 AL 145
           +L
Sbjct: 179 SL 180

>pdb|1WE0|A Chain A, Crystal Structure Of Peroxiredoxin (Ahpc) From Amphibacillus Xylanus Length = 187

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           ++ +VS D+H  H AW +   A  S            ++ D +  IS+ +       G +
Sbjct: 67  EVYSVSTDTHFVHKAWHENSPAVGSIEYI--------MIGDPSQTISRQFDVLNEETGLA 118
Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQ-CPVNWTTGQPSVK 142
            R  +IID  G ++++ ++   +GR+   ++ +V+A Q V     + CP  W  G  ++K
Sbjct: 119 DRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYVRENPGEVCPAKWEEGGETLK 178
Query: 143 VAL 145
            +L
Sbjct: 179 PSL 181

>pdb|3EMP|A Chain A, Crystal Structure Of The S-Acetanilide Modified Form Of C165s Ahpc Length = 186

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 9/122 (7%)
Query: 25  IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSL 84
           + +VS D+H  H AW  +    +  + A        ++ D T A+++ +       G + 
Sbjct: 67  VYSVSTDTHFTHKAWHSSSETIAKIKYA--------MIGDPTGALTRNFDNMREDEGLAD 118
Query: 85  RAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQC-PVNWTTGQPSVKV 143
           RA +++D +G ++++ V+   +GR+  ++LR+++A Q V +   +  P  W  G+ ++  
Sbjct: 119 RATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVSPAKWKEGEATLAP 178
Query: 144 AL 145
           +L
Sbjct: 179 SL 180

>pdb|1PRX|A Chain A, Horf6 A Novel Human Peroxidase Enzyme Length = 224

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVP--LLSDSTHAISKTYGCYLSSAG 81
           ++IA+S+DS   HLAW+K + A +S     +P++ +P  ++ D    ++   G    +  
Sbjct: 67  KLIALSIDSVEDHLAWSKDINAYNSE----EPTEKLPFPIIDDRNRELAILLGMLDPAEK 122
Query: 82  H------SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWT 135
                  + R  ++      L+   +     GRN  EILR V + QL        PV+W 
Sbjct: 123 DEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWK 182
Query: 136 TG 137
            G
Sbjct: 183 DG 184

>pdb|2V2G|A Chain A, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form Length = 233

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCY----LSS 79
           ++IA+S D+   H  W++ +   S  +  +      P+++D T  ++   G       +S
Sbjct: 65  KLIALSCDNVADHKEWSEDVKCLSGVKGDMP----YPIIADETRELAVKLGMVDPDERTS 120
Query: 80  AGHSL--RAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTG 137
            G  L  RA +II     L+   +     GRN  EILR +++ QL        P +W  G
Sbjct: 121 TGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSLQLTAQKKVATPADWQPG 180

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	145
1e2y_A	188	TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin	1e-42
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	2e-42
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	4e-42
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	4e-42
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	5e-42
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	5e-42
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	8e-42
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	2e-41
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	3e-41
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	3e-40
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	2e-39
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	7e-39
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	1e-38
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	2e-38
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	2e-38
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	3e-34
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	6e-30
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	2e-29
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	2e-29
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	1e-28
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	6e-22
2cx4_A	164	Bacterioferritin comigratory protein; oxidoreducta	6e-07
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	4e-06
2ywn_A	157	Peroxiredoxin-like protein; redox protein, structu	4e-06
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	1e-04
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	3e-04
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	3e-04
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	5e-04

>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase; 3.2A {Crithidia fasciculata} SCOP: c.47.1.10 Length = 188

 Score =  138 bits (350), Expect = 1e-42
 Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 5/119 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           ++I+ S DS  +HL WT         +  + P  I P+L+D T AI++ YG     +G +
Sbjct: 72  EVISCSCDSEYSHLQWTSV----DRKKGGLGPMAI-PMLADKTKAIARAYGVLDEDSGVA 126

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
            R  +IID  G LR + ++D+ +GRN++E++R VEA Q V+     CP NW  G    K
Sbjct: 127 YRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQFVEEHGEVCPANWKKGDAKKK 185

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 Length = 202

 Score =  138 bits (350), Expect = 2e-42
 Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 5/119 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A S+DS  +HLAWT         R  +    I P+L+D T  I K+YG      G +
Sbjct: 72  EVLACSMDSEYSHLAWTSI----ERKRGGLGQMNI-PILADKTKCIMKSYGVLKEEDGVA 126

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
            R  +IID +  LR + V+D+ VGR++ E LR V+AFQ V+     CP NW  G  ++K
Sbjct: 127 YRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQFVEKHGEVCPANWKPGDKTMK 185

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} Length = 216

 Score =  138 bits (349), Expect = 4e-42
 Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 5/119 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           Q++  S DS  + LAWT            + P  I PLL+D+ H++S+ YG  +   G +
Sbjct: 88  QVLFASTDSEYSLLAWTNI----PRKEGGLGPINI-PLLADTNHSLSRDYGVLIEEEGVA 142

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           LR  +IID +G +R + ++D+ VGRN+ E LR VEAFQ  D   T  P NWT G  ++K
Sbjct: 143 LRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAFQWTDKNGTVLPCNWTPGAATIK 201

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 Length = 220

 Score =  138 bits (349), Expect = 4e-42
 Identities = 49/119 (41%), Positives = 71/119 (59%), Gaps = 5/119 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++AVSVDSH +HLAW  T          +    I  LLSD T  IS+ YG  L   G +
Sbjct: 92  EVVAVSVDSHFSHLAWINT----PRKNGGLGHMNI-ALLSDLTKQISRDYGVLLEGPGLA 146

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           LR  +IID  G ++ ++V+D+ VGR+++E LR V+AFQ V++     P NWT   P++K
Sbjct: 147 LRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVEAHGEVSPANWTPESPTIK 205

>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A* Length = 197

 Score =  137 bits (347), Expect = 5e-42
 Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 5/119 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++ VSVDS   HLAW  T          + P  I PLL+D T  +S+ YG   +  G +
Sbjct: 70  EVLGVSVDSQFTHLAWINT----PRKEGGLGPLNI-PLLADVTRRLSEDYGVLKTDEGIA 124

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
            R  +IID +G LR + V+D+ VGR++ E LR V+AFQ  D     CP  W  G  ++K
Sbjct: 125 YRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTIK 183

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D Length = 222

 Score =  138 bits (349), Expect = 5e-42
 Identities = 48/119 (40%), Positives = 65/119 (54%), Gaps = 5/119 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           Q+IA S DS  +HLAW             +   KI PLL+D    ISK YG +    G++
Sbjct: 105 QVIACSTDSQYSHLAWDNL----DRKSGGLGHMKI-PLLADRKQEISKAYGVFDEEDGNA 159

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
            R  +IID  G LR + ++D  VGR++ E LR ++AFQ V+     CPVNW  GQ  +K
Sbjct: 160 FRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAFQFVEKHGEVCPVNWKRGQHGIK 218

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 211

 Score =  136 bits (346), Expect = 8e-42
 Identities = 52/119 (43%), Positives = 71/119 (59%), Gaps = 5/119 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A SVDS   HLAW  T       +  + P +I PLLSD TH ISK YG YL  +GH+
Sbjct: 84  EVVACSVDSQFTHLAWINT----PRRQGGLGPIRI-PLLSDLTHQISKDYGVYLEDSGHT 138

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++ 
Sbjct: 139 LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETII 197

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} Length = 240

 Score =  137 bits (346), Expect = 2e-41
 Identities = 53/119 (44%), Positives = 71/119 (59%), Gaps = 5/119 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A SVDS   HLAW  T       +  + P KI PLLSD TH ISK YG YL   GH+
Sbjct: 113 EVVACSVDSQFTHLAWIIT----PRKQGGLGPMKI-PLLSDLTHQISKDYGVYLEDQGHT 167

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           LR  +IID++G LR + ++D+ VGR++ E LR V+AFQ  D     CP  W  G  ++ 
Sbjct: 168 LRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSDTII 226

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C Length = 254

 Score =  136 bits (345), Expect = 3e-41
 Identities = 51/119 (42%), Positives = 70/119 (58%), Gaps = 5/119 (4%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++A SVDS   HLAW  T       +  + P +I PLLSD TH ISK YG YL  +GH+
Sbjct: 127 EVVACSVDSQFTHLAWINT----PRRQGGLGPIRI-PLLSDLTHQISKDYGVYLEDSGHT 181

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           LR  +IID +G LR + ++D+ VGR++ E LR V+AFQ  D      P  W  G  ++ 
Sbjct: 182 LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVAPAGWKPGSETII 240

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 Length = 198

 Score =  132 bits (335), Expect = 3e-40
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 6/119 (5%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
            +I VS+DS   H AW  T       +  I      P+++D T +IS+ Y         +
Sbjct: 69  NVIGVSIDSEQVHFAWKNT----PVEKGGIGQVSF-PMVADITKSISRDYDVLFE-EAIA 122

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           LR  ++IDK   +R   ++D+ +GRN  E+LR V+A    +     CP  W  G   +K
Sbjct: 123 LRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGDKGMK 181

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} Length = 221

 Score =  131 bits (332), Expect = 2e-39
 Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 6/119 (5%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++ +SVDS  +HLAW          +  I   +   L+SD    ISK Y   L     +
Sbjct: 92  ELLGISVDSVYSHLAWKNM----PIEKGGIGNVEF-TLVSDINKDISKNYNV-LYDNSFA 145

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           LR  +IIDK G +R   V+D+ +GRN++E+LR +++   VD++   CP+NW  GQ + K
Sbjct: 146 LRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSIIHVDTSGEVCPINWKKGQKAFK 204

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A Length = 186

 Score =  128 bits (325), Expect = 7e-39
 Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 9/120 (7%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
            + +VS D+H  H AW  +          I   K   ++ D T A+++ +       G +
Sbjct: 66  DVYSVSTDTHFTHKAWHSS-------SETIAKIKY-AMIGDPTGALTRNFDNMREDEGLA 117

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDS-TDTQCPVNWTTGQPSVK 142
            RA +++D +G ++++ V+   +GR+  ++LR+++A Q V +     CP  W  G+ ++ 
Sbjct: 118 DRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLA 177

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 Length = 192

 Score =  128 bits (324), Expect = 1e-38
 Identities = 41/119 (34%), Positives = 71/119 (59%), Gaps = 6/119 (5%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++  SVDS   HLAW KT      ++  I   K   L+SD + +I+++Y   L +   +
Sbjct: 67  ELLGCSVDSKFTHLAWKKT----PLSQGGIGNIKH-TLISDISKSIARSYDV-LFNESVA 120

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           LRA+ +IDK+G ++ + V+++ +GR++ EILR ++A Q  +     CP NW  G+ S+K
Sbjct: 121 LRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYGDVCPANWQKGKESMK 179

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A Length = 213

 Score =  128 bits (324), Expect = 2e-38
 Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++  SVDS   HLAW KT       +  I   K   LLSD T +ISK Y         S
Sbjct: 88  ELLGCSVDSKYTHLAWKKT----PLAKGGIGNIKH-TLLSDITKSISKDYNVLFDD-SVS 141

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
           LRA+ +ID  G ++ + V+++ +GR++ EILR ++A Q  +     CP NW  G+ S+K
Sbjct: 142 LRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQHHEKYGDVCPANWQKGKVSMK 200

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 Length = 187

 Score =  127 bits (322), Expect = 2e-38
 Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 9/120 (7%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           ++ +VS D+H  H AW +          A+   +   ++ D +  IS+ +       G +
Sbjct: 67  EVYSVSTDTHFVHKAWHEN-------SPAVGSIEY-IMIGDPSQTISRQFDVLNEETGLA 118

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDS-TDTQCPVNWTTGQPSVK 142
            R  +IID  G ++++ ++   +GR+   ++ +V+A Q V       CP  W  G  ++K
Sbjct: 119 DRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYVRENPGEVCPAKWEEGGETLK 178

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 195

 Score =  116 bits (294), Expect = 3e-34
 Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 13/119 (10%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           QI+ VS+DS  AH  W           + +      P+LSD    +S+  G  L++ G +
Sbjct: 81  QILGVSIDSEFAHFQWRAQ-------HNDLKTLPF-PMLSDIKRELSQAAGV-LNADGVA 131

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
            R  +I+D    ++ ++ +   VGRN+ E+LR ++A Q    +D  C  NW  G P++ 
Sbjct: 132 DRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ----SDELCASNWRKGDPTLD 186

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A Length = 233

 Score =  107 bits (269), Expect = 6e-30
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 10/126 (7%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           ++IA+S D+   H  W++ +   S  +  +      P+++D T  ++   G        S
Sbjct: 65  KLIALSCDNVADHKEWSEDVKCLSGVKGDMP----YPIIADETRELAVKLGMVDPDERTS 120

Query: 84  ------LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTG 137
                  RA +II     L+   +     GRN  EILR +++ QL        P +W  G
Sbjct: 121 TGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSLQLTAQKKVATPADWQPG 180

Query: 138 QPSVKV 143
              + V
Sbjct: 181 DRCMVV 186

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 Length = 224

 Score =  105 bits (265), Expect = 2e-29
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 8/126 (6%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           ++IA+S+DS   HLAW+K + A +S           P++ D    ++   G    +    
Sbjct: 67  KLIALSIDSVEDHLAWSKDINAYNSEEPTEKLP--FPIIDDRNRELAILLGMLDPAEKDE 124

Query: 84  ------LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTG 137
                  R  ++      L+   +     GRN  EILR V + QL        PV+W  G
Sbjct: 125 KGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDG 184

Query: 138 QPSVKV 143
              + +
Sbjct: 185 DSVMVL 190

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A Length = 220

 Score =  105 bits (264), Expect = 2e-29
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 11/126 (8%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           ++I  S +S  +H  W + +         ++  +I P++ D +  ++             
Sbjct: 67  KLIGFSCNSKESHDKWIEDIKYYGK----LNKWEI-PIVCDESRELANKLKIMDEQEKDI 121

Query: 84  ------LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTG 137
                  R  + I     +++  +     GRN  EILR +++ QL  +T    PVNW  G
Sbjct: 122 TGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQLTYTTPVATPVNWNEG 181

Query: 138 QPSVKV 143
                +
Sbjct: 182 DKCCVI 187

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A Length = 249

 Score =  104 bits (262), Expect = 1e-28
 Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 7/117 (5%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG-H 82
            +I +SVDS  +H+ W + +      R         P+++D    +++  G   + +  H
Sbjct: 69  DLIGLSVDSVFSHIKWKEWIERHIGVRIPF------PIIADPQGTVARRLGLLHAESATH 122

Query: 83  SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQP 139
           ++R  +I+D RG +R+M    +++GR + EILR V+A +L DS     P +W   + 
Sbjct: 123 TVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNNEI 179

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A Length = 160

 Score = 84.6 bits (210), Expect = 6e-22
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 14/100 (14%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSD--STHAISKTYGCYLSSAG 81
             +A+SV     H  W      T             PLLSD     A+S+ YG +   AG
Sbjct: 72  AALAISVGPPPTHKIWATQSGFT------------FPLLSDFWPHGAVSQAYGVFNEQAG 119

Query: 82  HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ 121
            + R  +++D+ G +R   +      R+ +     + A  
Sbjct: 120 IANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT 159

>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant enzyme, reactive oxygen species, thioredoxin fold, structural genomics; 2.30A {Aeropyrum pernix} SCOP: c.47.1.10 PDB: 2cx3_A Length = 164

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 21/105 (20%)

Query: 24  QIIAVSVDSHLAHLAWTKT--LTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG 81
           +++A+SVDS      +     L                 LLSD    + K Y  Y     
Sbjct: 69  EVLAISVDSPWCLKKFKDENRLA--------------FNLLSDYNREVIKLYNVYHEDLK 114

Query: 82  H----SLRAYYIIDKRGYLRSMNVS-DIQVGRNLKEILRQVEAFQ 121
                + RA +I+   G +    V+ +     +  E++R+     
Sbjct: 115 GLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA 159

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 Length = 163

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 13/98 (13%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS-THAISKTYGCYLSSAGH 82
            ++ VS+D   A   W       +             +LSD   H+  + Y   ++    
Sbjct: 76  VVLTVSMDLPFAQKRWCGAEGLDN-----------AIMLSDYFDHSFGRDYALLINEWHL 124

Query: 83  SLRAYYIIDKRGYLR-SMNVSDIQVGRNLKEILRQVEA 119
             RA +++D    +R    V +I    N +  +   +A
Sbjct: 125 LARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA 162

>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Sulfolobus tokodaii} PDB: 3hjp_A Length = 157

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 22/104 (21%)

Query: 24  QIIAVSVDSHLAHLAWTK--TLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG 81
            ++ +SVD   ++ A+ +   L                 +LSD    + K Y        
Sbjct: 66  VVLGISVDPPFSNKAFKEHNKLN--------------FTILSDYNREVVKKYNVAWEFPA 111

Query: 82  H-----SLRAYYIIDKRGYLRSMNVSD-IQVGRNLKEILRQVEA 119
                 + RA ++IDK G +R   VSD         EI + V++
Sbjct: 112 LPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKS 155

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} Length = 166

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 13/98 (13%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTH-AISKTYGCYLSSAGH 82
            ++ +S D   A   W       S+          V  LSD    +  + YG  +     
Sbjct: 79  IVLTISADLPFAQKRW-----CASAGL------DNVITLSDHRDLSFGENYGVVMEELRL 127

Query: 83  SLRAYYIIDKRGYLR-SMNVSDIQVGRNLKEILRQVEA 119
             RA +++D    +     VS+     +    L   + 
Sbjct: 128 LARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN 165

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 31/142 (21%)

Query: 3   TKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLL 62
           T +A DV      ++     F+I             W   L   + N     P  ++ +L
Sbjct: 164 TWVALDVCL--SYKVQCKMDFKIF------------W---LNLKNCNS----PETVLEML 202

Query: 63  SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKE---ILRQVEA 119
               + I   +    S    +++   I   +  LR      +   +  +    +L  V+ 
Sbjct: 203 QKLLYQIDPNW-TSRSDHSSNIK-LRIHSIQAELR-----RLLKSKPYENCLLVLLNVQN 255

Query: 120 FQLVDSTDTQCPVNWTTGQPSV 141
            +  ++ +  C +  TT    V
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQV 277

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 14/97 (14%)

Query: 22  PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG 81
            F I  VS D       W K +    S          V L  D    + ++Y        
Sbjct: 62  GFTIYGVSTDRREE--DWKKAIEEDKS------YWNQVLLQKDDVKDVLESYCIV----- 108

Query: 82  HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE 118
                  ++D  G + +  +    +   +++ +   +
Sbjct: 109 -GFPHIILVDPEGKIVAKELRGDDLYNTVEKFVNGAK 144

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} Length = 171

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 15/100 (15%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS---A 80
            +  VS+D   A   + ++    +           V + SD  +   + YG  +      
Sbjct: 81  DVTVVSMDLPFAQKRFCESFNIQN-----------VTVASDFRYRDMEKYGVLIGEGALK 129

Query: 81  GHSLRAYYIIDKRGYLR-SMNVSDIQVGRNLKEILRQVEA 119
           G   RA +IIDK G +     V +I    N  E++ +V+ 
Sbjct: 130 GILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKE 169

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 19/95 (20%)

Query: 23  FQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGH 82
              +++S D +    AW   +T         D  K + L   +       Y        +
Sbjct: 64  IHFVSLSCDKNKK--AWENMVTK--------DQLKGIQLHMGTDRTFMDAYLI------N 107

Query: 83  SLRAYYIIDKRGYLRSMNV---SDIQVGRNLKEIL 114
            +  + ++D+ G + S N+   SD +      E+L
Sbjct: 108 GIPRFILLDRDGKIISANMTRPSDPKTAEKFNELL 142

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A Length = 167

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS-THAISKTYGCYLSSAGH 82
            +  +S D   A   W           + ID    V  LSD    +  + +G Y+     
Sbjct: 78  NVYTISADLPFAQARWCGA--------NGIDK---VETLSDHRDMSFGEAFGVYIKELRL 126

Query: 83  SLRAYYIIDKRGYLR 97
             R+ +++D+ G + 
Sbjct: 127 LARSVFVLDENGKVV 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	100.0
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	100.0
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.97
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.97
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.97
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.97
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.97
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.97
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.97
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.96
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.96
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.96
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.95
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.95
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.95
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.95
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.95
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.93
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.92
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.91
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.88
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.87
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.87
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	99.85
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	99.84
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.83
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	99.81
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.8
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.79
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.79
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.79
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.78
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.78
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.77
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.77
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.76
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.76
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.76
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.76
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.75
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.75
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.73
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.72
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.71
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.71
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.68
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.63
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.59
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.59
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.58
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.58
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.58
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.57
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.56
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.53
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.53
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.52
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.5
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.49
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.49
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.48
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.48
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.48
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.47
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.46
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.46
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.46
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.46
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.45
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.44
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.43
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.42
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.42
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.42
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.42
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.42
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.41
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.41
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.41
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.4
4h86_A	199	Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch	99.39
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.38
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.38
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.36
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.36
3me7_A	170	Putative uncharacterized protein; electron transfe	99.35
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.35
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.34
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.33
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.33
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.32
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	99.3
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.3
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	98.96
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.29
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.28
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.28
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.25
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.24
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.23
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.14
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.01
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.0
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	98.98
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	98.51
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	98.9
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	98.26
2l57_A	126	Uncharacterized protein; structural genomics, unkn	98.1
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	97.71
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	97.29
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	97.27
2kuc_A	130	Putative disulphide-isomerase; structural genomics	97.15
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	97.13
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	97.09
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	97.08
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	97.08
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	97.08
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	97.07
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	97.04
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	96.97
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	96.96
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	96.88
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	96.87
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	96.82
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	96.77
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	96.76
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	96.76
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	96.74
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	96.74
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	96.72
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	96.68
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	96.62
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	96.62
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	96.61
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	96.59
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	96.59
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	96.58
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	96.58
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	96.56
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	96.56
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	96.55
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	96.53
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	96.51
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	96.48
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	96.37
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	96.26
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	96.26
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	96.25
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	96.2
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	96.19
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	96.18
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	96.17
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	96.1
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	96.08
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	96.04
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	96.01
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	95.94
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	95.94
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	95.93
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	95.92
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	95.85
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	95.83
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	95.82
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	95.73
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	95.68
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	95.66
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	95.51
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	95.37
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	95.36
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	95.36
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	95.3
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	95.29
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	95.28
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	95.21
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	95.2
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	95.06
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	94.97
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	94.88
2qsi_A	137	Putative hydrogenase expression/formation protein;	94.32
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	94.18
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	94.18
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	94.05
3ira_A	173	Conserved protein; methanosarcina mazei,structural	93.99
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	93.66
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	93.28
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	93.26
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	92.2
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	93.02
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	92.56
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	91.8
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	90.8
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	91.4
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	91.32
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	91.17
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	90.81
1mek_A	120	Protein disulfide isomerase; electron transport, r	90.68
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	90.19
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	90.16
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	89.96
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	89.39
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	88.89
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	88.84
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	88.23
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	87.62
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	86.83
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	86.48
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	86.34
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	85.96
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	85.77
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	84.99
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	84.51
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	84.35
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	84.33
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	84.29
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	84.0
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	83.68
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	82.7
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	82.5
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	80.25

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-39  Score=251.09  Aligned_cols=137  Identities=33%  Similarity=0.557  Sum_probs=128.7

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG   81 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g   81 (145)
                      ||.|+|.|++.+  ++|+++|++|||||.|++++|++|+++.+..+  |+..+   +||+|+|++++++++||+..+..|
T Consensus        68 Ct~E~~~f~~~~--~~f~~~g~~vigiS~Ds~~sh~aw~~~~~~~~--~~~~l---~fpllsD~~~~vak~YGv~~~~~g  140 (216)
T 3sbc_A           68 SPTEIIAFSEAA--KKFEEQGAQVLFASTDSEYSLLAWTNIPRKEG--GLGPI---NIPLLADTNHSLSRDYGVLIEEEG  140 (216)
T ss_dssp             HHHHHHHHHHHH--HHHHHTTEEEEEEESSCHHHHHHHHTSCGGGT--CCCSC---SSCEEECTTSHHHHHHTCEETTTT
T ss_pred             CchhhhHHHHhH--HhhccCCceEEEeecCchhhHHHHHHHHHHhC--CccCc---ccceEeCCCCHHHHHcCCeeccCC
Confidence            999999999999  69999999999999999999999998755444  55558   999999999999999999988789


Q ss_pred             CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccCC
Q psy17183         82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVAL  145 (145)
Q Consensus        82 ~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~~  145 (145)
                      ++.|++||||++|+|++..+++.+++|+++|+|++|++||++++|+++||+||++|+++|+|++
T Consensus       141 ~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l~AlQ~~~~~~~~~Pa~W~~G~~~i~p~~  204 (216)
T 3sbc_A          141 VALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAFQWTDKNGTVLPCNWTPGAATIKPTV  204 (216)
T ss_dssp             EECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHHCCBBCTTCCTTSCCBCCST
T ss_pred             ceeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHHHHhhhHhhcCCCcCCCCCCCCceecCCH
Confidence            9999999999999999999999999999999999999999999999999999999999999974

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=100.00  E-value=1.1e-38  Score=247.36  Aligned_cols=137  Identities=34%  Similarity=0.594  Sum_probs=109.6

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .||.|+|.|++++  ++|+++|++|||||+|++++|++|+++..+..  ++..+   +||||+|++++|+++||+..+..
T Consensus        71 vCt~E~~~f~~~~--~eF~~~g~~vigiS~Ds~~sh~~w~~~~~~~~--~~~~l---~fpllsD~~~~va~~yGv~~~~~  143 (219)
T 3tue_A           71 VCPTEVIAFSDSV--SRFNELNCEVLACSIDSEYAHLQWTLQDRKKG--GLGTM---AIPILADKTKNIARSYGVLEESQ  143 (219)
T ss_dssp             SCCHHHHHHHTTH--HHHHTTTEEEEEEESSCHHHHHHHHHSCGGGT--CCCSC---SSCEEECTTSHHHHHTTCEETTT
T ss_pred             CCchhHhhHHHHH--hhhccCCcEEEEeeCCchhhHHHHhhhhHHhc--Ccccc---ccccccCcccHHHHHcCCcccCC
Confidence            4999999999999  79999999999999999999999998643333  34448   99999999999999999998878


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                      |++.|++||||++|+|+++++++.+++|+++|+|+.|++||++++|+++||+||++|+++|+|+
T Consensus       144 g~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EvLr~l~aLQ~~~~~~~~~Pa~W~~G~~~i~p~  207 (219)
T 3tue_A          144 GVAYRGLFIIDPHGMLRQITVNDMPVGRSVEEVLRLLEAFQFVEKHGEVCPANWKKGDPGMKPE  207 (219)
T ss_dssp             TEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHHHHC------------------
T ss_pred             CeeEEEEEEECCCCeEEEEEEecCCCCCCHHHHHHHHHHhhhHHhcCCCcCCCCCCCCccccCC
Confidence            9999999999999999999999999999999999999999999999999999999999999974

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.97  E-value=1.3e-31  Score=206.72  Aligned_cols=135  Identities=21%  Similarity=0.341  Sum_probs=119.6

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhc-CCCCCCCCCCCCccEEecCchHHHHHhCCCccC-
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTAT-SSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS-   79 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~-   79 (145)
                      |+.|++.|++++  ++|+++|++|||||.|+.+++++|.+.+++. .  + ..+   +||+++|.+++++++||+.... 
T Consensus        47 C~~el~~l~~l~--~~f~~~~v~vi~vS~D~~~~~~~~~~~i~~~~~--~-~~~---~fpil~D~~~~va~~ygv~~~~~  118 (220)
T 1xcc_A           47 CTTELAELGKMH--EDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGK--L-NKW---EIPIVCDESRELANKLKIMDEQE  118 (220)
T ss_dssp             HHHHHHHHHHTH--HHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHT--C-SCC---CCCEEECTTSHHHHHHTCEEEEE
T ss_pred             CHHHHHHHHHHH--HHHHHcCCEEEEEeCCCHHHHHHHHHHHHHHhc--C-CCC---cceeEECchhHHHHHhCCCCccc
Confidence            999999999999  6999999999999999999999999876543 1  0 128   9999999999999999996431 


Q ss_pred             ---CC--CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         80 ---AG--HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        80 ---~g--~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                         .|  .+.|++||||++|+|++.+.++.+.+++.+|+++.|++||.+++|+.+||+||++|+++|+|+
T Consensus       119 ~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i~~lq~~~~~~~~~p~~w~~g~~~~~~p  188 (220)
T 1xcc_A          119 KDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQLTYTTPVATPVNWNEGDKCCVIP  188 (220)
T ss_dssp             ECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHSSEEBCTTCCTTSCEEECT
T ss_pred             ccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHHhhhcCCcccCCCcCcCCceEeCC
Confidence               12  358999999999999999999888889999999999999999999999999999999999853

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.97  E-value=2.4e-31  Score=207.39  Aligned_cols=136  Identities=24%  Similarity=0.378  Sum_probs=119.6

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCC-CCCCCCccEEecCchHHHHHhCCCccC-
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSA-IDPSKIVPLLSDSTHAISKTYGCYLSS-   79 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~fpllsD~~~~va~~yg~~~~~-   79 (145)
                      |+.|++.|++++  ++|+++|++|||||.|+.+++++|++.+++..  +.. .+   +||+++|.+++++++||+.... 
T Consensus        45 C~~el~~l~~l~--~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~--~~~~~~---~fpil~D~~~~va~~ygv~~~~~  117 (233)
T 2v2g_A           45 STTELGRVIQLE--GDFKKRGVKLIALSCDNVADHKEWSEDVKCLS--GVKGDM---PYPIIADETRELAVKLGMVDPDE  117 (233)
T ss_dssp             HHHHHHHHHHTH--HHHHHTTEEEEEEESSCHHHHHHHHHHHHHHH--TCCSSC---SSCEEECTTCHHHHHTTCEEEEE
T ss_pred             cHHHHHHHHHHH--HHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhh--CcccCC---ceEEEECChHHHHHHhCCcCccc
Confidence            999999999999  69999999999999999999999999765321  110 18   9999999999999999997431 


Q ss_pred             ---CC--CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         80 ---AG--HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        80 ---~g--~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                         .|  .+.|++||||++|+|++.++++.+.+++.+|+++.|++||.+++|+.+||+||++|+++|+|+
T Consensus       118 ~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr~l~~Lq~~~~~~~~~p~~W~~g~~~~~~p  187 (233)
T 2v2g_A          118 RTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSLQLTAQKKVATPADWQPGDRCMVVP  187 (233)
T ss_dssp             ECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHSSEEBCTTCCTTSCEEECT
T ss_pred             ccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHHhhccCCccCCCCcCcCCceEeCC
Confidence               12  368999999999999999999888899999999999999999999999999999999999854

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.97  E-value=6.4e-31  Score=203.28  Aligned_cols=136  Identities=24%  Similarity=0.362  Sum_probs=120.8

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCC---CCCCCCCccEEecCchHHHHHhCCCcc
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRS---AIDPSKIVPLLSDSTHAISKTYGCYLS   78 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~fpllsD~~~~va~~yg~~~~   78 (145)
                      |+.|++.|++++  ++|+++|++|||||.|+.+++++|.+.+++..  ++   ..+   +||+++|.+++++++||+...
T Consensus        47 C~~el~~l~~l~--~~f~~~~v~vi~IS~D~~~~~~~~~~~i~~~~--~~~~~~~~---~fpil~D~~~~va~~ygv~~~  119 (224)
T 1prx_A           47 CTTELGRAAKLA--PEFAKRNVKLIALSIDSVEDHLAWSKDINAYN--SEEPTEKL---PFPIIDDRNRELAILLGMLDP  119 (224)
T ss_dssp             HHHHHHHHHHHH--HHHHTTTEEEEEEESSCHHHHHHHHHHHHHHT--TSCCCSCC---SSCEEECTTCHHHHHTTSSCS
T ss_pred             cHHHHHHHHHHH--HHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhh--CcccccCc---CcceeecCchHHHHHhCCCCc
Confidence            999999999999  69999999999999999999999999876542  21   128   999999999999999999753


Q ss_pred             C----C--CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         79 S----A--GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        79 ~----~--g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                      .    .  +.+.|++||||++|+|++.+.++...+++.+|+++.|++||.+++|+.+||+||++|+++|+|+
T Consensus       120 ~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~~i~~l~~~~~~~~~~p~~W~~g~~~~~~p  191 (224)
T 1prx_A          120 AEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLP  191 (224)
T ss_dssp             CTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHHHHHHHHCEEBCTTCCTTSCEEECT
T ss_pred             ccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHHhhccCCcCCCCCCCCCCceEeCC
Confidence            1    1  2468999999999999999999888889999999999999999999999999999999999853

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.97  E-value=2.5e-31  Score=209.47  Aligned_cols=137  Identities=36%  Similarity=0.597  Sum_probs=108.1

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|+.|++.|++++  ++|+++|++||+||.|+.+.+++|++..++..  |+..+   +||+++|.++++++.||+.....
T Consensus       106 ~C~~el~~l~~l~--~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~--g~~~~---~fp~l~D~~~~va~~ygv~~~~~  178 (254)
T 3tjj_A          106 VCPTEIIAFGDRL--EEFRSINTEVVACSVDSQFTHLAWINTPRRQG--GLGPI---RIPLLSDLTHQISKDYGVYLEDS  178 (254)
T ss_dssp             SCCHHHHHHHHTH--HHHHTTTEEEEEEESSCHHHHHHHHTSCGGGT--SCCSC---SSCEEECTTSHHHHHHTCEETTT
T ss_pred             chHHHHHHHHHHH--HHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhc--CCccc---ccceeeCcHHHHHHHcCCccccC
Confidence            4999999999999  69999999999999999999999998754443  33338   99999999999999999987666


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                      |...|++||||++|+|++.++++.+.+++.+++++.|+++|++++|+++||+||++|+++|+|+
T Consensus       179 g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~alq~~~~~~~~cp~~W~~g~~~~~~~  242 (254)
T 3tjj_A          179 GHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVAPAGWKPGSETIIPD  242 (254)
T ss_dssp             TEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHC-----------------
T ss_pred             CCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHhhccccccCccccCCCCCCCceeccC
Confidence            7778999999999999999999888899999999999999999999999999999999999975

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.97  E-value=1.7e-30  Score=202.78  Aligned_cols=136  Identities=38%  Similarity=0.621  Sum_probs=123.4

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG   81 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g   81 (145)
                      |+.|++.|++++  ++|+++|++||+||.|+.+.+++|++..++..  ++..+   +||+++|.+++++++||+.....|
T Consensus        93 C~~el~~l~~l~--~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~--~~~~~---~fp~l~D~~~~v~~~ygv~~~~~g  165 (240)
T 3qpm_A           93 CPTEIIAFSDRV--HEFRAINTEVVACSVDSQFTHLAWIITPRKQG--GLGPM---KIPLLSDLTHQISKDYGVYLEDQG  165 (240)
T ss_dssp             HHHHHHHHHHHH--HHHHTTTEEEEEEESSCHHHHHHHHHSCGGGT--CCCSC---SSCEEECTTSHHHHHTTCEETTTT
T ss_pred             hHHHHHHHHHHH--HHHHHCCCEEEEEECCCHHHHHHHHHHHHhhc--CCCCC---ceeEEeCchHHHHHHhCCccccCC
Confidence            999999999999  69999999999999999999999998744432  22238   999999999999999999876567


Q ss_pred             CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        82 ~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                      ...|++||||++|+|++.+.++.+.+++.+++++.|++++.+++|+++||+||++|+++|+|+
T Consensus       166 ~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~lq~~~~~~~~cp~~W~~g~~~~~~~  228 (240)
T 3qpm_A          166 HTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSDTIIPD  228 (240)
T ss_dssp             EECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHHSCBBCTTCCTTSCCBCSS
T ss_pred             CccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhhhhcCCccCCCCCCCCceecCC
Confidence            678999999999999999999888889999999999999999999999999999999999975

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.97  E-value=2.4e-30  Score=203.85  Aligned_cols=134  Identities=25%  Similarity=0.422  Sum_probs=122.3

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG   81 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g   81 (145)
                      |+.|++.|++++  ++|+++|++||+||+|+.+++.+|.+.+.+..  |. .+   +||+++|.++++++.||+..+..|
T Consensus        49 C~tEl~~l~~l~--~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~--~~-~i---~fPil~D~~~~ia~~ygv~~~~~g  120 (249)
T 3a2v_A           49 CTTEFVSFARRY--EDFQRLGVDLIGLSVDSVFSHIKWKEWIERHI--GV-RI---PFPIIADPQGTVARRLGLLHAESA  120 (249)
T ss_dssp             HHHHHHHHHHTH--HHHHHTTEEEEEEESSCHHHHHHHHHHHHHHT--CC-CC---CSCEEECTTSHHHHHHTCCCTTCS
T ss_pred             hHHHHHHHHHHH--HHHHhCCcEEEEEECCCHHHHHHHHHHHHHhc--CC-CC---ceeEEECCchHHHHHhCCccccCC
Confidence            999999999999  69999999999999999999999998765532  22 28   999999999999999999865555


Q ss_pred             C-cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCC-----CCCccccC
Q psy17183         82 H-SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTT-----GQPSVKVA  144 (145)
Q Consensus        82 ~-~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~-----~~~~~~~~  144 (145)
                      . +.|++||||++|+|++..+++.+.+|+.+|+++.|++||.+++|+++||+|| +     |+++|+|+
T Consensus       121 ~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~alq~~~~~~~~~Pa~W-~~~~~~g~~~~~~~  188 (249)
T 3a2v_A          121 THTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADW-PNNEIIGEGLIVPP  188 (249)
T ss_dssp             SSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHHTCBBCTTT-TSBTTTBTCEEECC
T ss_pred             CcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHHHhccccCccCCCCC-CCCCCCCCCeecCC
Confidence            4 7899999999999999999998889999999999999999999999999999 9     99999975

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.97  E-value=9.3e-30  Score=190.47  Aligned_cols=134  Identities=25%  Similarity=0.473  Sum_probs=119.4

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG   81 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g   81 (145)
                      |+.|++.|++++  ++|+++|++||+||.|+++.+++|+++   ++  ++.++   +||+++|.+++++++||+.....|
T Consensus        46 C~~e~~~l~~~~--~~~~~~~v~vv~Is~d~~~~~~~~~~~---~~--~~~~~---~fp~l~D~~~~~~~~ygv~~~~~g  115 (186)
T 1n8j_A           46 SPTELGDVADHY--EELQKLGVDVYSVSTDTHFTHKAWHSS---SE--TIAKI---KYAMIGDPTGALTRNFDNMREDEG  115 (186)
T ss_dssp             HHHHHHHHHHHH--HHHHHTTEEEEEEESSCHHHHHHHHHH---CT--TGGGC---CSEEEECTTSHHHHHTTCEETTTT
T ss_pred             cHHHHHHHHHHH--HHHHHCCCEEEEEECCCHHHHHHHHHH---cC--cccCC---ceeEEECCchHHHHHhCCccCCCC
Confidence            999999999999  699999999999999999999999887   61  11128   999999999999999999854445


Q ss_pred             CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccC-CcccCCCCCCCCCccccCC
Q psy17183         82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDST-DTQCPVNWTTGQPSVKVAL  145 (145)
Q Consensus        82 ~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~-~~~~p~~w~~~~~~~~~~~  145 (145)
                      ...|++||||++|+|++.+.++.+.+++.+++++.|++|+..++| +++||+||++|+++|+|.+
T Consensus       116 ~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~p~~~~p~~w~~~~~~~~~~~  180 (186)
T 1n8j_A          116 LADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAPSL  180 (186)
T ss_dssp             EECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHSTTCBBCTTCCTTSCCBCCSS
T ss_pred             ceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHHHHhhcCCCccCCCCCCCCccccCCh
Confidence            557999999999999999998876778899999999999999999 7999999999999999864

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.96  E-value=3.7e-29  Score=191.23  Aligned_cols=136  Identities=38%  Similarity=0.624  Sum_probs=120.0

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG   81 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g   81 (145)
                      |+.|++.|++++  ++|+++|++||+||.|+++.+++|++..++..  |+..+   +||+++|.+++++++||+.....|
T Consensus        64 C~~e~~~l~~l~--~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~--g~~~~---~fp~l~D~~~~~~~~ygv~~~~~g  136 (211)
T 2pn8_A           64 CPTEIIAFGDRL--EEFRSINTEVVACSVDSQFTHLAWINTPRRQG--GLGPI---RIPLLSDLTHQISKDYGVYLEDSG  136 (211)
T ss_dssp             HHHHHHHHHHTH--HHHHTTTEEEEEEESSCHHHHHHHHTSCGGGT--CCCSC---SSCEEECTTSHHHHHTTCEETTTT
T ss_pred             CHHHHHHHHHHH--HHHHHCCCEEEEEECCCHHHHHHHHHHhhhcc--CccCC---ceEEEECCchHHHHHcCCcccCCC
Confidence            999999999999  69999999999999999999999988632221  22227   899999999999999999754445


Q ss_pred             CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        82 ~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                      ...|++||||++|+|++.+.++.+.+++.+++++.|++|+..+.++++||+||++|+++|+|+
T Consensus       137 ~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l~~~~~~~~~~p~~w~~g~~~~~~~  199 (211)
T 2pn8_A          137 HTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETIIPD  199 (211)
T ss_dssp             EECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHHCCBBCTTCCTTSCCBCSS
T ss_pred             cccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhcccCCcccCCCCCCCCccccCC
Confidence            568999999999999999999877778999999999999999999999999999999999975

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.96  E-value=3.4e-28  Score=183.47  Aligned_cols=136  Identities=33%  Similarity=0.574  Sum_probs=120.9

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG   81 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g   81 (145)
                      |+.|++.|++++  ++|++.|++||+||.|+.+.+++|++..++..  |+..+   +||+++|.++++++.||+.....|
T Consensus        52 C~~~~~~l~~l~--~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~--~~~~~---~~p~l~D~~~~~~~~ygv~~~~~g  124 (202)
T 1uul_A           52 CPTEICQFSDRV--KEFSDIGCEVLACSMDSEYSHLAWTSIERKRG--GLGQM---NIPILADKTKCIMKSYGVLKEEDG  124 (202)
T ss_dssp             HHHHHHHHHHTH--HHHHTTTEEEEEEESSCHHHHHHHHHSCGGGT--CCCSC---SSCEEECTTCHHHHHHTCEETTTT
T ss_pred             CHHHHHHHHHHH--HHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhC--CCCCC---ceeEEECCchHHHHHcCCccCCCC
Confidence            999999999999  69999999999999999999999998632221  22238   999999999999999999865556


Q ss_pred             CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        82 ~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                      ...|++||||++|+|++.+.+..+.+++.+++++.|++|+..++++++||+||++|+++|+|+
T Consensus       125 ~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~~~~~~~~~~p~~w~~g~~~~~~~  187 (202)
T 1uul_A          125 VAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQFVEKHGEVCPANWKPGDKTMKPD  187 (202)
T ss_dssp             EECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHHSCBBCTTCCTTSCCBCSS
T ss_pred             ceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhhhhhhcCCccCCCcCCCCceeccC
Confidence            678999999999999999999887788999999999999999999999999999999999975

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.96  E-value=2.2e-28  Score=187.14  Aligned_cols=135  Identities=33%  Similarity=0.503  Sum_probs=119.8

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG   81 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g   81 (145)
                      |+.|++.|++++  ++|++.|++||+||.|+++.+++|++..++..  |+..+   +||+++|.+++++++||+.. ..|
T Consensus        68 C~~~~~~l~~l~--~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~--g~~~~---~fp~l~D~~~~~~~~ygv~~-~~g  139 (213)
T 2i81_A           68 CPSEIIALDKAL--DAFHERNVELLGCSVDSKYTHLAWKKTPLAKG--GIGNI---KHTLLSDITKSISKDYNVLF-DDS  139 (213)
T ss_dssp             HHHHHHHHHHTH--HHHHHTTEEEEEEESSCHHHHHHHHSSCGGGT--CCCSC---SSEEEECTTSHHHHHTTCEE-TTT
T ss_pred             CHHHHHHHHHHH--HHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhC--CccCC---CceEEECCchHHHHHhCCcc-ccC
Confidence            999999999999  68999999999999999999999988632221  22238   99999999999999999985 345


Q ss_pred             CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        82 ~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                      ...|++||||++|+|++.+.+..+.+++.+++++.|++|+..+.++++||+||++|+++|+|+
T Consensus       140 ~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l~~~~~~~~~cp~~w~~g~~~~~~~  202 (213)
T 2i81_A          140 VSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQHHEKYGDVCPANWQKGKVSMKPS  202 (213)
T ss_dssp             EECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHCCBCCTTCCTTSCCBCSS
T ss_pred             CcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHHhhhhcCCCcCCCCCcCCccccCC
Confidence            568999999999999999999877788999999999999999999999999999999999975

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.95  E-value=4.5e-28  Score=186.10  Aligned_cols=137  Identities=35%  Similarity=0.568  Sum_probs=103.7

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|+.|++.|++++  ++|+++|++||+||.|+.+.+++|++..++..  |+..+   +||+++|.++++++.||+.....
T Consensus        71 ~C~~~~~~l~~l~--~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~--g~~~~---~fp~l~D~~~~i~~~ygv~~~~~  143 (220)
T 1zye_A           71 VCPTEIIAFSDKA--SEFHDVNCEVVAVSVDSHFSHLAWINTPRKNG--GLGHM---NIALLSDLTKQISRDYGVLLEGP  143 (220)
T ss_dssp             SSHHHHHHHHHHH--HHHHHTTEEEEEEESSCHHHHHHHHTSCGGGT--CCCSC---SSEEEECTTSHHHHHTTCEETTT
T ss_pred             CCHHHHHHHHHHH--HHHHHCCCEEEEEECCCHHHHHHHHHHHHHhC--CCcCC---ceEEEECCcHHHHHHhCCeecCC
Confidence            4999999999999  69999999999999999999999988632222  22237   99999999999999999986555


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                      |...|++||||++|+|++.+.++.+.+++.+++++.|++|+..++++++||+||++|+++|+|+
T Consensus       144 g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~~~~~~~~~cp~~W~~g~~~~~~~  207 (220)
T 1zye_A          144 GLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVEAHGEVSPANWTPESPTIKPH  207 (220)
T ss_dssp             TEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHTTC-------------------
T ss_pred             CcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhhcccCCccCCCCCCCCceecCC
Confidence            6678999999999999999999887788999999999999999999999999999999999975

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.95  E-value=5.7e-28  Score=186.36  Aligned_cols=136  Identities=30%  Similarity=0.527  Sum_probs=106.8

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|+.|++.|++++  ++|+++|++||+||.|+++.+++|++...+..  |+..+   +||+++|.++++++.||+. ...
T Consensus        71 ~C~~e~p~l~~l~--~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~--g~~~~---~fp~l~D~~~~~~~~ygv~-~~~  142 (221)
T 2c0d_A           71 VCPTEIIEFNKHI--KDFENKNVELLGISVDSVYSHLAWKNMPIEKG--GIGNV---EFTLVSDINKDISKNYNVL-YDN  142 (221)
T ss_dssp             CCHHHHHHHHHTH--HHHHHTTEEEEEEESSCHHHHHHHHHSCGGGT--CCCSC---SSEEEECTTSHHHHHTTCE-ETT
T ss_pred             chHHHHHHHHHHH--HHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhc--CccCC---ceEEEECCchHHHHHcCCc-ccC
Confidence            4999999999999  68999999999999999999999998732211  22127   8999999999999999997 444


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                      |...|++||||++|+|++.+.++.+.+++.+++++.|++|+..+.++++||+||++|+++|.|.
T Consensus       143 g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L~~~~~~~~~cp~~W~~g~~~~~~~  206 (221)
T 2c0d_A          143 SFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSIIHVDTSGEVCPINWKKGQKAFKPT  206 (221)
T ss_dssp             TEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHCCSCC-------------
T ss_pred             CCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhhhcCCCcCCCCCCCCCccccCC
Confidence            5568999999999999999998876678899999999999999999999999999999999864

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.95  E-value=3.1e-27  Score=181.45  Aligned_cols=136  Identities=36%  Similarity=0.601  Sum_probs=121.2

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG   81 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g   81 (145)
                      |..|++.|++++  ++|+++|++||+||.|+.+...+|.+..++..  ++..+   +||+++|.++++++.||+.....|
T Consensus        85 C~~~~p~l~~l~--~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~--~~~~~---~~~~l~D~~~~~~~~ygv~~~~~g  157 (222)
T 3ztl_A           85 CPTEIIAFSDQV--EEFNSRNCQVIACSTDSQYSHLAWDNLDRKSG--GLGHM---KIPLLADRKQEISKAYGVFDEEDG  157 (222)
T ss_dssp             HHHHHHHHHHTH--HHHHTTTEEEEEEESSCHHHHHHHHHSCGGGT--SCCSC---SSCEEECSSSHHHHHTTCBCTTTS
T ss_pred             hHHHHHHHHHHH--HHHHHCCCEEEEEECCCHHHHHHHHHHhhhhc--ccccc---ceeEEeCCchHHHHHcCCeecCCC
Confidence            999999999999  69999999999999999999999998743331  11128   999999999999999999866567


Q ss_pred             CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        82 ~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                      ...|++||||++|+|++.+.+..+.++..+++++.|++++.++.++.+||+||++|+++|.|+
T Consensus       158 ~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~l~~~~~~~~~c~~~w~~~~~~~~~~  220 (222)
T 3ztl_A          158 NAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAFQFVEKHGEVCPVNWKRGQHGIKVN  220 (222)
T ss_dssp             SBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHHHHHHHHHSCBBCTTCCTTSCCBCC-
T ss_pred             CccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhcccccCccCCcCcCCCCccccCC
Confidence            678999999999999999999887777899999999999999999999999999999999975

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.95  E-value=8.8e-28  Score=179.50  Aligned_cols=136  Identities=29%  Similarity=0.511  Sum_probs=113.1

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|+.+++.|++++  ++|++.|++||+||.|+++.+++|.+...+..  ++..+   +||+++|.++++++.||+.. ..
T Consensus        46 ~C~~~~~~l~~~~--~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~--~~~~~---~~~~l~D~~~~~~~~~gv~~-~~  117 (192)
T 2h01_A           46 VCPSEIIALDKAL--DSFKERNVELLGCSVDSKFTHLAWKKTPLSQG--GIGNI---KHTLISDISKSIARSYDVLF-NE  117 (192)
T ss_dssp             SCCHHHHHHHHTH--HHHHHTTEEEEEEESSCHHHHHHHHTSCGGGT--CCCSC---SSEEEECTTSHHHHHTTCEE-TT
T ss_pred             CCHHHHHHHHHHH--HHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhC--CccCC---CcCeEECCcHHHHHHhCCcC-cC
Confidence            4999999999999  68998999999999999999999988632221  22237   89999999999999999975 34


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                      |...|++||||++|+|++.+.+..+.+++.+++++.|++++..+.++++||+||++|+++|+|+
T Consensus       118 g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~~~~~~~~cp~~w~~~~~~~~~~  181 (192)
T 2h01_A          118 SVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYGDVCPANWQKGKESMKPS  181 (192)
T ss_dssp             TEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHHHHHHHCCCCCSSCCCC-------
T ss_pred             CceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHHhhhhhcCCCccCCCCCCCccccCC
Confidence            6568999999999999999998777778899999999999999999999999999999999975

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.93  E-value=1.1e-25  Score=167.29  Aligned_cols=131  Identities=25%  Similarity=0.446  Sum_probs=104.6

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhc----CCCCCCCCCCCCccEEecCchHHHHHhCCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTAT----SSNRSAIDPSKIVPLLSDSTHAISKTYGCY   76 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~fpllsD~~~~va~~yg~~   76 (145)
                      .|..+++.|++++  ++|+.+|++|++||.|+++.+++|++.   +    +      +   +||+++|.++++++.||+.
T Consensus        46 ~C~~~~~~l~~~~--~~~~~~~v~vv~vs~d~~~~~~~~~~~---~~~~~~------~---~~~~~~d~~~~~~~~~~v~  111 (187)
T 1we0_A           46 VCPTELEDVQKEY--AELKKLGVEVYSVSTDTHFVHKAWHEN---SPAVGS------I---EYIMIGDPSQTISRQFDVL  111 (187)
T ss_dssp             SCTHHHHHHHHHH--HHHHHTTEEEEEEESSCHHHHHHHHHS---CHHHHT------C---CSEEEECTTCHHHHHTTCE
T ss_pred             chHHHHHHHHHHH--HHHHHcCCEEEEEECCCHHHHHHHHHH---hccccC------C---CceEEECCchHHHHHhCCC
Confidence            4999999999999  689988999999999999999999886   4    4      8   9999999999999999998


Q ss_pred             ccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccC-CcccCCCCCCCCCccccCC
Q psy17183         77 LSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDST-DTQCPVNWTTGQPSVKVAL  145 (145)
Q Consensus        77 ~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~-~~~~p~~w~~~~~~~~~~~  145 (145)
                      ....|...|++||||++|+|++.+.+..+.+++.+++++.|++++..+.| +.+||+||.+|+++|.+++
T Consensus       112 ~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~~~~~~~~~~p~~w~~~~~~~~~~~  181 (187)
T 1we0_A          112 NEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYVRENPGEVCPAKWEEGGETLKPSL  181 (187)
T ss_dssp             ETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHHHHHTSTTCCC---------------
T ss_pred             cCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhhhhCCCcccccccccCCceeecCH
Confidence            54445568999999999999999999876667889999999999999999 7999999999999998654

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.92  E-value=1.1e-24  Score=163.42  Aligned_cols=136  Identities=28%  Similarity=0.479  Sum_probs=106.1

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|..+++.|++++  ++|+..|++||+||.|+++.+++|++.+.+..  +...+   +||+++|.++++++.||+... .
T Consensus        48 ~C~~~~~~l~~l~--~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~--~~~~~---~~~~~~d~~~~~~~~~~v~~~-~  119 (198)
T 1zof_A           48 VCPTEIIAFDKRV--KDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKG--GIGQV---SFPMVADITKSISRDYDVLFE-E  119 (198)
T ss_dssp             SCCTHHHHHHHTH--HHHHHTTEEEEEEESSCHHHHHHHHTSCGGGT--CCCCC---SSCEEECTTSHHHHHTTCEET-T
T ss_pred             chHHHHHHHHHHH--HHHHHcCCEEEEEECCCHHHHHHHHHhhhhcc--cccCc---eeEEEECCchHHHHHhCCccc-C
Confidence            4999999999999  68999999999999999999999988643321  11238   899999999999999999742 3


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                      |...|++||||++|+|++.+.+..+.+++.+++++.|++++....|++.||+||++|+++|++.
T Consensus       120 g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~~~~~~~~~p~~w~~~~~~~~~~  183 (198)
T 1zof_A          120 AIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGDKGMKAT  183 (198)
T ss_dssp             TEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHHHHHSSCCCCC-------------
T ss_pred             CcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHHHhhccCCccCCcCcCCCccccCC
Confidence            4458999999999999999999876677899999999999999999999999999999999863

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.91  E-value=7.9e-24  Score=158.51  Aligned_cols=130  Identities=28%  Similarity=0.452  Sum_probs=96.6

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|..+++.|.+++  ++|..++++||+||.|+++.+++|++.   +.  ++..+   +||+++|.++++++.||+... .
T Consensus        60 ~C~~~~~~l~~l~--~~~~~~~v~vv~Vs~d~~~~~~~~~~~---~~--~~~~~---~~~~~~d~~~~~~~~~~v~~~-~  128 (195)
T 2bmx_A           60 VCPTEIAAFSKLN--DEFEDRDAQILGVSIDSEFAHFQWRAQ---HN--DLKTL---PFPMLSDIKRELSQAAGVLNA-D  128 (195)
T ss_dssp             CCHHHHHHHHHTH--HHHHTTTEEEEEEESSCHHHHHHHHHH---CT--TGGGC---CSCEEECTTSHHHHHHTCBCT-T
T ss_pred             CcHHHHHHHHHHH--HHHHHCCCEEEEEECCCHHHHHHHHHH---hc--cccCC---ceeEEeCCchHHHHHhCCccc-C
Confidence            4999999999999  689988999999999999999999886   51  11128   999999999999999999854 4


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccCC
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVAL  145 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~~  145 (145)
                      |...|++||||++|+|++.+.+..+.+++.+++++.|++++.    ++.||+||++|++++.|++
T Consensus       129 g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~----~~~~p~~w~~~~~~~~~~~  189 (195)
T 2bmx_A          129 GVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQS----DELCASNWRKGDPTLDAGE  189 (195)
T ss_dssp             SSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHC-----------------------
T ss_pred             CCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh----CCCcCcccccCCcccCCCh
Confidence            556899999999999999999987666789999999999985    7799999999999999764

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.88  E-value=1.9e-22  Score=146.99  Aligned_cols=107  Identities=23%  Similarity=0.285  Sum_probs=89.0

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|+.|+|.|++++  ++|+..|+++++||.|+++.+++|+++   ++      +   +||+++|++++++++||+.....
T Consensus        45 ~C~~e~~~l~~~~--~~~~~~~~~~v~vs~d~~~~~~~~~~~---~~------~---~~p~l~D~~~~v~~~ygv~~~~~  110 (157)
T 4g2e_A           45 VCTKEMCTFRDSM--AKFNQVNAVVLGISVDPPFSNKAFKEH---NK------L---NFTILSDYNREVVKKYNVAWEFP  110 (157)
T ss_dssp             C------CCSCGG--GGGGGCSSEEEEEESSCHHHHHHHHHH---TT------C---CSEEEECTTSHHHHHTTCEEECT
T ss_pred             ccccchhhccccc--ccccccCceEeeecccchhHHHHHHHH---cC------C---cEEEEEcCCcHHHHHcCCccccc
Confidence            4999999999999  699999999999999999999999986   76      8   99999999999999999965432


Q ss_pred             C-----CcceEEEEECCCCcEEEEEeecCCCCC-CHHHHHHHHHhcc
Q psy17183         81 G-----HSLRAYYIIDKRGYLRSMNVSDIQVGR-NLKEILRQVEAFQ  121 (145)
Q Consensus        81 g-----~~~p~tfIID~dG~I~~~~~~~~~~~~-~~~ell~~i~~l~  121 (145)
                      +     .+.|++||||++|+|++.++++.+.++ +.++++++|++|.
T Consensus       111 ~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~Ls  157 (157)
T 4g2e_A          111 ALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSLS  157 (157)
T ss_dssp             TSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHHTC
T ss_pred             cCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHhC
Confidence            2     368999999999999999998876554 7999999999873

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.87  E-value=4.7e-23  Score=151.61  Aligned_cols=106  Identities=23%  Similarity=0.292  Sum_probs=94.4

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC--
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS--   79 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~--   79 (145)
                      |+.|+|.|++++  ++|++.|+++++||.|+++.+++|+++   ++      +   +||+|+|++++++++||+..+.  
T Consensus        49 C~~e~~~l~~~~--~~~~~~~v~vv~is~d~~~~~~~~~~~---~~------~---~fp~l~D~~~~v~~~ygv~~~~~~  114 (164)
T 4gqc_A           49 CTKELCTFRDKM--AQLEKANAEVLAISVDSPWCLKKFKDE---NR------L---AFNLLSDYNREVIKLYNVYHEDLK  114 (164)
T ss_dssp             ECSSCEESCCCG--GGGGGSSSEEEEEESSCHHHHHHHHHH---TT------C---CSEEEECTTSHHHHHTTCEEEEET
T ss_pred             cccchhhhhhhH--HHhhccCceEEEecCCCHHHHHHHHHh---cC------c---ccceeecCchHHHHHcCCcccccc
Confidence            999999999999  699999999999999999999999986   76      8   9999999999999999997532  


Q ss_pred             --CCCcceEEEEECCCCcEEEEEeecCCCCC-CHHHHHHHHHhcc
Q psy17183         80 --AGHSLRAYYIIDKRGYLRSMNVSDIQVGR-NLKEILRQVEAFQ  121 (145)
Q Consensus        80 --~g~~~p~tfIID~dG~I~~~~~~~~~~~~-~~~ell~~i~~l~  121 (145)
                        .+.+.|++||||++|+|++.++++.+.++ +++|+++.|++|.
T Consensus       115 ~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~  159 (164)
T 4gqc_A          115 GLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA  159 (164)
T ss_dssp             TEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHHH
T ss_pred             cCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence              12468999999999999999998876655 8999999998874

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.87  E-value=8.5e-22  Score=146.81  Aligned_cols=104  Identities=20%  Similarity=0.268  Sum_probs=93.2

Q ss_pred             hh-HHHHHHHHHhhhhhhhcCCcEEEE-EeCCCHHHHHHHHHHHhhcCCCCCCCCCCCC--ccEEecCchHHHHHhCCCc
Q psy17183          2 DT-KIACDVLKLVRKEILIVSPFQIIA-VSVDSHLAHLAWTKTLTATSSNRSAIDPSKI--VPLLSDSTHAISKTYGCYL   77 (145)
Q Consensus         2 ~t-~e~~~~~~~~~~~~f~~~gv~vi~-VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--fpllsD~~~~va~~yg~~~   77 (145)
                      |+ .|+|.|++++  ++|+++|++||| ||.|+++.+++|+++   ++      +   +  ||+|+|++++++++||+..
T Consensus        59 C~~~e~p~l~~~~--~~~~~~gv~vv~~iS~D~~~~~~~f~~~---~~------~---~~~fp~l~D~~~~va~~yGv~~  124 (173)
T 3mng_A           59 CSKTHLPGFVEQA--EALKAKGVQVVACLSVNDAFVTGEWGRA---HK------A---EGKVRLLADPTGAFGKETDLLL  124 (173)
T ss_dssp             HHHTHHHHHHHTH--HHHHTTTCCEEEEEESSCHHHHHHHHHH---TT------C---TTTCEEEECTTCHHHHHHTCBC
T ss_pred             CCHHHHHHHHHHH--HHHHhCCCEEEEEEcCCCHHHHHHHHHH---hC------C---CCceEEEECCChHHHHHhCCCc
Confidence            99 5999999999  699999999997 999999999999997   65      6   6  9999999999999999986


Q ss_pred             cCC-----C--CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         78 SSA-----G--HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        78 ~~~-----g--~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +..     |  .+.|+||||| +|+|++.++++.+.+++..++.+.|++|
T Consensus       125 ~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v~~~~~g~~~~~~~~vl~~l  173 (173)
T 3mng_A          125 DDSLVSIFGNRRLKRFSMVVQ-DGIVKALNVEPDGTGLTCSLAPNIISQL  173 (173)
T ss_dssp             CSTTHHHHSSCCBCCEEEEEE-TTEEEEEEECTTSSCSSTTSHHHHHHHC
T ss_pred             ccccccccCCcceEEEEEEEE-CCEEEEEEEeCCCCCcchHHHHHHHHhC
Confidence            531     2  3679999999 9999999999998899988888888765

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=99.85  E-value=3.7e-21  Score=144.49  Aligned_cols=103  Identities=18%  Similarity=0.257  Sum_probs=85.6

Q ss_pred             hhH-HHHHHHHHhhhhhhhcCCc-EEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCC--ccEEecCchHHHHHhCCCc
Q psy17183          2 DTK-IACDVLKLVRKEILIVSPF-QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKI--VPLLSDSTHAISKTYGCYL   77 (145)
Q Consensus         2 ~t~-e~~~~~~~~~~~~f~~~gv-~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--fpllsD~~~~va~~yg~~~   77 (145)
                      ||. |+|.|++++  ++|+++|+ +|+|||+|+++++++|+++   .+      +   +  ||+|+|++++++++||+..
T Consensus        63 Ct~~El~~f~~~~--~ef~~~g~d~VigIS~D~~~~~~~f~~~---~~------l---~~~f~lLsD~~~~va~ayGv~~  128 (176)
T 4f82_A           63 CSAQHVPGYVEHA--EQLRAAGIDEIWCVSVNDAFVMGAWGRD---LH------T---AGKVRMMADGSAAFTHALGLTQ  128 (176)
T ss_dssp             HHHTHHHHHHHHH--HHHHHTTCCEEEEEESSCHHHHHHHHHH---TT------C---TTTSEEEECTTCHHHHHHTCEE
T ss_pred             CCHHHHHHHHHHH--HHHHhCCCCEEEEEeCCCHHHHHHHHHH---hC------C---CCCceEEEcCchHHHHHhCCCc
Confidence            999 999999999  69999999 9999999999999999997   65      7   7  9999999999999999986


Q ss_pred             cC--CCC---cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         78 SS--AGH---SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        78 ~~--~g~---~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +.  .|+   +.|++||| ++|+|++.++++ +.+++..++.+.|++|
T Consensus       129 ~~~~~G~g~~s~R~tfII-~dG~I~~~~~~~-~~~~~~~~a~~vL~~L  174 (176)
T 4f82_A          129 DLSARGMGIRSLRYAMVI-DGGVVKTLAVEA-PGKFEVSDAASVLATL  174 (176)
T ss_dssp             ECGGGTCCEEECCEEEEE-ETTEEEEEEECC-TTCCSSSSHHHHHHTC
T ss_pred             cccccCCCcccccEEEEE-cCCEEEEEEEcC-CCCcchhhHHHHHHHh
Confidence            53  343   57999999 999999999987 3333333444444444

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=99.84  E-value=1.4e-20  Score=141.81  Aligned_cols=106  Identities=11%  Similarity=0.111  Sum_probs=90.4

Q ss_pred             hh-HHHHHHHHHhhhhhh-hcCCcE-EEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCcc
Q psy17183          2 DT-KIACDVLKLVRKEIL-IVSPFQ-IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLS   78 (145)
Q Consensus         2 ~t-~e~~~~~~~~~~~~f-~~~gv~-vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~   78 (145)
                      || .|+|.|++.+  ++| +++|+. |+|||+|+++++++|+++   .+      +.  +||+|||++++++++||+..+
T Consensus        59 Ct~~e~~~f~~~~--~~f~~~~g~~~V~gvS~D~~~~~~~~~~~---~~------~~--~f~lLsD~~~~~a~~yGv~~~  125 (182)
T 1xiy_A           59 CSTKMIPGYEEEY--DYFIKENNFDDIYCITNNDIYVLKSWFKS---MD------IK--KIKYISDGNSSFTDSMNMLVD  125 (182)
T ss_dssp             HHHTHHHHHHHTH--HHHHTTSCCSEEEEEESSCHHHHHHHHHH---TT------CC--SSEEEECTTSHHHHHTTCEEE
T ss_pred             CCHHHHHHHHHHH--HHHHHhCCCcEEEEEeCCCHHHHHHHHHH---cC------CC--CceEEEeCchHHHHHhCCcee
Confidence            99 9999999999  699 999995 999999999999999997   54      51  599999999999999999754


Q ss_pred             C--CCC---cceEEEEECCCCcEEEEEeecCCC---------CCCHHHHHHHHHhcc
Q psy17183         79 S--AGH---SLRAYYIIDKRGYLRSMNVSDIQV---------GRNLKEILRQVEAFQ  121 (145)
Q Consensus        79 ~--~g~---~~p~tfIID~dG~I~~~~~~~~~~---------~~~~~ell~~i~~l~  121 (145)
                      .  .|+   +.|++|||| +|+|++.++.+.+.         ..+.+++|+.|++.+
T Consensus       126 ~~~~G~g~~~~R~tfvId-dG~V~~~~v~~~~~~~~~~~~~~~~~~~~vL~~L~~~~  181 (182)
T 1xiy_A          126 KSNFFMGMRPWRFVAIVE-NNILVKMFQEKDKQHNIQTDPYDISTVNNVKEFLKNNQ  181 (182)
T ss_dssp             CGGGTCCEEECCEEEEEE-TTEEEEEEECSSCCTTCSSCCCSTTSHHHHHHHHHCC-
T ss_pred             ccccCCCCceEEEEEEEc-CCEEEEEEEeCCcccccccCcccCCCHHHHHHHHHhcc
Confidence            3  242   689999999 99999999876443         368999999998644

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.83  E-value=6.8e-21  Score=154.43  Aligned_cols=112  Identities=19%  Similarity=0.313  Sum_probs=94.2

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG   81 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g   81 (145)
                      ||.|+|.|++.    .|  .|++|+|||.|+++++++|+++   ++      +   +||+|+|++++++++||+..  .|
T Consensus        40 C~~e~~~~~~~----~~--~~~~v~gis~D~~~~~~~f~~~---~~------l---~fp~l~D~~~~v~~~ygv~~--~~   99 (322)
T 4eo3_A           40 STREAVEFSRE----NF--EKAQVVGISRDSVEALKRFKEK---ND------L---KVTLLSDPEGILHEFFNVLE--NG   99 (322)
T ss_dssp             HHHHHHHHHHS----CC--TTEEEEEEESCCHHHHHHHHHH---HT------C---CSEEEECTTCHHHHHTTCEE--TT
T ss_pred             CHHHHHHHHHH----hh--CCCEEEEEeCCCHHHHHHHHHh---hC------C---ceEEEEcCchHHHHhcCCCC--CC
Confidence            99999999763    34  3899999999999999999997   76      9   99999999999999999974  25


Q ss_pred             CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCC
Q psy17183         82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWT  135 (145)
Q Consensus        82 ~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~  135 (145)
                      .+.|+|||||++|+|++++.+. .++.|.+|+|+.|++++. +++.....++|.
T Consensus       100 ~~~r~tfiId~~G~i~~~~~~v-~~~~h~~~~l~~~~~~~~-~~~~~~~~I~~R  151 (322)
T 4eo3_A          100 KTVRSTFLIDRWGFVRKEWRRV-KVEGHVQEVKEALDRLIE-EDLSLNKHIEWR  151 (322)
T ss_dssp             EECCEEEEECTTSBEEEEEESC-CSTTHHHHHHHHHHHHHH-HHTSCCHHHHHC
T ss_pred             cCccEEEEECCCCEEEEEEeCC-CccccHHHHHHHHhhhch-hhhHHHHHHHhh
Confidence            6789999999999999998765 567799999999999985 445544444443

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=99.81  E-value=6.3e-20  Score=137.08  Aligned_cols=105  Identities=19%  Similarity=0.258  Sum_probs=83.6

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcE-EEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQ-IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS   79 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~-vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~   79 (145)
                      .||.|+|.|++.+  ++|+++|++ |+|||+|+++++++|+++   .+   +. .   +||+|||++++++++||+..+.
T Consensus        57 ~Ct~e~~~f~~~~--~ef~~~gv~~VigIS~D~~~~~~~w~~~---~~---~~-~---~f~lLSD~~~~~a~ayGv~~~~  124 (171)
T 2xhf_A           57 GSNNHIPEYLSLY--DKFKEEGYHTIACIAVNDPFVMAAWGKT---VD---PE-H---KIRMLADMHGEFTRALGTELDS  124 (171)
T ss_dssp             TTTSSHHHHHHTH--HHHHHTTCCEEEEEESSCHHHHHHHHHH---HC---TT-C---CSEEEECTTSHHHHHHTCBCCC
T ss_pred             cCHHHHHHHHHHH--HHHHHCCCCEEEEEeCCCHHHHHHHHHh---cC---CC-C---CeEEEEeCCchHHHHhCCceec
Confidence            3999999999999  799999996 999999999999999997   43   11 3   7999999999999999998653


Q ss_pred             C----C-CcceEEEEECCCCcEEEEEeecCCCCC---CHHHHHHHHH
Q psy17183         80 A----G-HSLRAYYIIDKRGYLRSMNVSDIQVGR---NLKEILRQVE  118 (145)
Q Consensus        80 ~----g-~~~p~tfIID~dG~I~~~~~~~~~~~~---~~~ell~~i~  118 (145)
                      .    | .+.|++|||| +|+|++.++.+.+.+.   +.++++++++
T Consensus       125 ~~~g~g~~~~R~tfvId-dG~V~~~~v~~~~~~~~~s~a~~vL~~~~  170 (171)
T 2xhf_A          125 SKMLGNNRSRRYAMLID-DNKIRSVSTEPDITGLACLLSIQRQKENK  170 (171)
T ss_dssp             HHHHSSCCBCCEEEEEE-TTEEEEEEETTSCSHHHHHHHHHHC----
T ss_pred             cccCCCcceEEEEEEEe-CCEEEEEEEeCCCCcccCCCHHHHHHHhc
Confidence            1    2 3789999998 9999999998755322   3455555443

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.80  E-value=2e-19  Score=135.16  Aligned_cols=100  Identities=17%  Similarity=0.244  Sum_probs=84.7

Q ss_pred             hhH-HHHHHHHHhhhhhhhcCCcE-EEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCC--ccEEecCchHHHHHhCCCc
Q psy17183          2 DTK-IACDVLKLVRKEILIVSPFQ-IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKI--VPLLSDSTHAISKTYGCYL   77 (145)
Q Consensus         2 ~t~-e~~~~~~~~~~~~f~~~gv~-vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--fpllsD~~~~va~~yg~~~   77 (145)
                      |+. |+|.|++++  ++|+++|++ |+|||.|+++.+++|+++   ++      +   +  ||+++|++++++++||+..
T Consensus        72 C~~~e~p~l~~~~--~~~~~~gv~~vv~Is~d~~~~~~~f~~~---~~------~---~~~fp~l~D~~~~va~~yGv~~  137 (184)
T 3uma_A           72 CSLNHLPGYLENR--DAILARGVDDIAVVAVNDLHVMGAWATH---SG------G---MGKIHFLSDWNAAFTKAIGMEI  137 (184)
T ss_dssp             HHHTHHHHHHHTH--HHHHTTTCCEEEEEESSCHHHHHHHHHH---HT------C---TTTSEEEECTTCHHHHHTTCEE
T ss_pred             cCHHHHHHHHHHH--HHHHHcCCCEEEEEECCCHHHHHHHHHH---hC------C---CCceEEEEcCchHHHHHcCCce
Confidence            999 899999999  699999999 999999999999999997   66      7   7  9999999999999999975


Q ss_pred             cC--CCC---cceEEEEECCCCcEEEEEeecCCCC---CCHHHHHHH
Q psy17183         78 SS--AGH---SLRAYYIIDKRGYLRSMNVSDIQVG---RNLKEILRQ  116 (145)
Q Consensus        78 ~~--~g~---~~p~tfIID~dG~I~~~~~~~~~~~---~~~~ell~~  116 (145)
                      ..  .|+   +.|++|||| +|+|++.++++.+..   .+.+++|+.
T Consensus       138 ~~~~~g~g~~~~r~tfiId-dG~I~~~~~~~~~g~~~~~~~~~vL~~  183 (184)
T 3uma_A          138 DLSAGTLGIRSKRYSMLVE-DGVVKALNIEESPGQATASGAAAMLEL  183 (184)
T ss_dssp             EEGGGTCEEEECCEEEEEE-TTEEEEEEECSSTTCCSTTSHHHHHHH
T ss_pred             eccccCCcccceeEEEEEC-CCEEEEEEEeCCCCCCcCCCHHHHHhh
Confidence            32  232   579999996 999999999986544   345555553

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.79  E-value=1.1e-18  Score=125.93  Aligned_cols=105  Identities=19%  Similarity=0.263  Sum_probs=90.8

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC-
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA-   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~-   80 (145)
                      |+.|++.|++++  ++|+++|++||+||.|+++..++|+++   ++      +   +||+++|.++++++.||+..... 
T Consensus        51 C~~~~~~l~~~~--~~~~~~~~~vv~vs~d~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~v~~~~~~  116 (163)
T 3gkn_A           51 ATTEGLDFNALL--PEFDKAGAKILGVSRDSVKSHDNFCAK---QG------F---AFPLVSDGDEALCRAFDVIKEKNM  116 (163)
T ss_dssp             HHHHHHHHHHHH--HHHHHTTCEEEEEESSCHHHHHHHHHH---HC------C---SSCEEECTTCHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHH--HHHHHCCCEEEEEeCCCHHHHHHHHHH---hC------C---CceEEECCcHHHHHHhCCcccccc
Confidence            999999999999  699999999999999999999999986   76      8   99999999999999999975211 


Q ss_pred             -CC----cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         81 -GH----SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        81 -g~----~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                       |.    ..|++||||++|+|++.+ .......+.+++++.|++|+
T Consensus       117 ~~~~~~~~~p~~~lid~~G~i~~~~-~~~~~~~~~~~il~~l~~l~  161 (163)
T 3gkn_A          117 YGKQVLGIERSTFLLSPEGQVVQAW-RKVKVAGHADAVLAALKAHA  161 (163)
T ss_dssp             TTEEEEEECCEEEEECTTSCEEEEE-CSCCSTTHHHHHHHHHHHHC
T ss_pred             ccccccCcceEEEEECCCCeEEEEE-cCCCcccCHHHHHHHHHHHh
Confidence             11    279999999999999998 44445567899999999886

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.79  E-value=1e-18  Score=129.37  Aligned_cols=105  Identities=18%  Similarity=0.233  Sum_probs=90.8

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC-
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA-   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~-   80 (145)
                      |+.|++.|++++  ++|+++|++||+||.|+++..++|+++   ++      +   +||+++|.++++++.||+..... 
T Consensus        67 C~~el~~l~~l~--~~~~~~~~~vv~Vs~D~~~~~~~~~~~---~~------~---~f~~l~D~~~~~~~~~gv~~~~~~  132 (179)
T 3ixr_A           67 SSTEGLEFNLLL--PQFEQINATVLGVSRDSVKSHDSFCAK---QG------F---TFPLVSDSDAILCKAFDVIKEKTM  132 (179)
T ss_dssp             HHHHHHHHHHHH--HHHHTTTEEEEEEESCCHHHHHHHHHH---HT------C---CSCEEECTTCHHHHHTTCEEEECC
T ss_pred             hHHHHHHHHHHH--HHHHHCCCEEEEEcCCCHHHHHHHHHH---cC------C---ceEEEECCchHHHHHcCCcccccc
Confidence            999999999999  699999999999999999999999986   76      8   99999999999999999975321 


Q ss_pred             -CC----cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         81 -GH----SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        81 -g~----~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                       |.    ..|++||||++|+|++.+. .....++.+++++.|++|+
T Consensus       133 ~g~~~~~~~p~~~lID~~G~I~~~~~-~~~~~~~~~~il~~l~~l~  177 (179)
T 3ixr_A          133 YGRQVIGIERSTFLIGPTHRIVEAWR-QVKVPGHAEEVLNKLKAHA  177 (179)
T ss_dssp             C--CEEEECCEEEEECTTSBEEEEEC-SCCSTTHHHHHHHHHHHHH
T ss_pred             cCcccCCcceEEEEECCCCEEEEEEc-CCCCCCCHHHHHHHHHHHh
Confidence             11    3699999999999999984 3445667899999999876

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.79  E-value=9.2e-19  Score=126.88  Aligned_cols=111  Identities=21%  Similarity=0.238  Sum_probs=97.0

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG   81 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g   81 (145)
                      |..+++.|++++  ++|+.+|++||+||.|+++..++|+++   ++      +   +||+++|.++++++.||+...  +
T Consensus        45 C~~~~~~l~~~~--~~~~~~~v~vv~vs~d~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~v~~~--~  108 (161)
T 3drn_A           45 STREASAFRDNW--DLLKDYDVVVIGVSSDDINSHKRFKEK---YK------L---PFILVSDPDKKIRELYGAKGF--I  108 (161)
T ss_dssp             HHHHHHHHHHTH--HHHHTTCEEEEEEESCCHHHHHHHHHH---TT------C---CSEEEECTTSHHHHHTTCCCS--S
T ss_pred             hHHHHHHHHHHH--HHHHHcCCEEEEEeCCCHHHHHHHHHH---hC------C---CceEEECCcHHHHHHcCCCCc--C
Confidence            999999999999  699999999999999999999999987   76      8   999999999999999999721  2


Q ss_pred             CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCc
Q psy17183         82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDT  128 (145)
Q Consensus        82 ~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~  128 (145)
                      ...|++||||++|+|++.+.+......+.+++++.|++|+..+++..
T Consensus       109 ~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~l~~~~~~~~  155 (161)
T 3drn_A          109 LPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQIKEEEISLE  155 (161)
T ss_dssp             SCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHHHHHHHHC--
T ss_pred             cccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHHhhhhhcchh
Confidence            35799999999999999999865556678999999999998765543

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.78  E-value=1.8e-18  Score=131.95  Aligned_cols=118  Identities=17%  Similarity=0.220  Sum_probs=93.9

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeC--------CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHh
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSV--------DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTY   73 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~--------D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~y   73 (145)
                      |..+++.|++++  ++|+.+|++||+||.        |+++..++|+++   ++      +   +||+++|.++++++.|
T Consensus        74 C~~~~~~l~~l~--~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~---~~------~---~~~~l~D~~~~~~~~~  139 (218)
T 3u5r_E           74 VVLIREALAKFA--GDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKA---YG------Y---GFPYLKDASQSVAKAY  139 (218)
T ss_dssp             HHTTHHHHHHHH--HHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHH---HT------C---CSCEEECTTCHHHHHH
T ss_pred             HHHHHHHHHHHH--HHHHhCCcEEEEEECCcccccccCCHHHHHHHHHH---hC------C---CccEEECCccHHHHHc
Confidence            899999999999  699999999999999        788889999886   76      8   9999999999999999


Q ss_pred             CCCccCCCCcceEEEEECCCCcEEEEEeecCC-----CCCCHHHHHHHHHhcccccc------CCcccCCCCCCCCC
Q psy17183         74 GCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQ-----VGRNLKEILRQVEAFQLVDS------TDTQCPVNWTTGQP  139 (145)
Q Consensus        74 g~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~-----~~~~~~ell~~i~~l~~~~~------~~~~~p~~w~~~~~  139 (145)
                      |+.      ..|++||||++|+|++....+..     .....+++.++|+++.....      .+.+||++|.+|.+
T Consensus       140 ~v~------~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~GC~i~w~~~~~  210 (218)
T 3u5r_E          140 GAA------CTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKDVGTTQVPSIGCNIKWTAGNE  210 (218)
T ss_dssp             TCC------EESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCCCCSCCCCCEEEECCCCCC--
T ss_pred             CCC------CCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHcCCCCCcCCcCCCCeeEEeCCCCC
Confidence            998      37999999999999987543221     11235667777766643322      23679999999865

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.78  E-value=2.6e-18  Score=132.40  Aligned_cols=105  Identities=16%  Similarity=0.279  Sum_probs=92.4

Q ss_pred             hh-HHHHHHHHHhhhhhhhcCCc-EEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCC-ccEEecCchHHHHHhCCCcc
Q psy17183          2 DT-KIACDVLKLVRKEILIVSPF-QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKI-VPLLSDSTHAISKTYGCYLS   78 (145)
Q Consensus         2 ~t-~e~~~~~~~~~~~~f~~~gv-~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-fpllsD~~~~va~~yg~~~~   78 (145)
                      |+ .|+|.|++++  ++|+++|+ +|+|||.|+++.+++|+++   ++      +   + ||+++|.+++++++||+...
T Consensus        49 C~~~e~~~l~~~~--~~~~~~~~~~vv~is~d~~~~~~~~~~~---~~------~---~~~~~l~D~~~~~~~~~gv~~~  114 (241)
T 1nm3_A           49 CSSSHLPRYNELA--PVFKKYGVDDILVVSVNDTFVMNAWKED---EK------S---ENISFIPDGNGEFTEGMGMLVG  114 (241)
T ss_dssp             HHHTHHHHHHHHH--HHHHHTTCCEEEEEESSCHHHHHHHHHH---TT------C---TTSEEEECTTSHHHHHTTCEEE
T ss_pred             CCHHHHHHHHHHH--HHHHHCCCCEEEEEEcCCHHHHHHHHHh---cC------C---CceEEEECCCcHHHHHhCceee
Confidence            99 9999999999  69999999 9999999999999999987   65      6   6 99999999999999999753


Q ss_pred             C--CCC---cceEEEEECCCCcEEEEEeecCCCC-----CCHHHHHHHHHhcc
Q psy17183         79 S--AGH---SLRAYYIIDKRGYLRSMNVSDIQVG-----RNLKEILRQVEAFQ  121 (145)
Q Consensus        79 ~--~g~---~~p~tfIID~dG~I~~~~~~~~~~~-----~~~~ell~~i~~l~  121 (145)
                      .  .|.   +.|++||| ++|+|++.+++..+.+     ++.+++++.|++..
T Consensus       115 ~~~~g~~~~~~p~t~li-~~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~~~~  166 (241)
T 1nm3_A          115 KEDLGFGKRSWRYSMLV-KNGVVEKMFIEPNEPGDPFKVSDADTMLKYLAPQH  166 (241)
T ss_dssp             CTTTTCCEEECCEEEEE-ETTEEEEEEECCSCSSCCCSSSSHHHHHHHHCTTS
T ss_pred             cccccCcccceeEEEEE-ECCEEEEEEEeccCCCccceecCHHHHHHHhhhhc
Confidence            2  243   57999999 9999999999987665     58999999998764

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.77  E-value=2.9e-18  Score=133.08  Aligned_cols=104  Identities=15%  Similarity=0.151  Sum_probs=89.2

Q ss_pred             Chh-----HHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC-chHHHHHhC
Q psy17183          1 MDT-----KIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS-THAISKTYG   74 (145)
Q Consensus         1 ~~t-----~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~-~~~va~~yg   74 (145)
                      .|+     .|+|.|++.     |  .|++|||||.|+++++++|+++   ++      ++  +||+|+|. +++++++||
T Consensus        63 ~C~~~~~~~El~~~~~~-----~--~gv~VvgIS~Ds~~~~~~f~~~---~g------l~--~fplLsD~~~~~vak~yG  124 (224)
T 3keb_A           63 EHAGLLLLRETRRFLDS-----W--PHLKLIVITVDSPSSLARARHE---HG------LP--NIALLSTLRGRDFHKRYG  124 (224)
T ss_dssp             TTTSHHHHHHHHHHHTT-----C--TTSEEEEEESSCHHHHHHHHHH---HC------CT--TCEEEESTTCTTHHHHTT
T ss_pred             CCCCCccHHHHHHHHHH-----c--CCCEEEEEECCCHHHHHHHHHH---cC------CC--CceEEEcCCchHHHHHhC
Confidence            389     999988875     4  6899999999999999999997   65      62  49999999 799999999


Q ss_pred             CCccC---CCCcceEEEEECCCCcEEEEEeecCCC-CCCHHHHHHHHHhccc
Q psy17183         75 CYLSS---AGHSLRAYYIIDKRGYLRSMNVSDIQV-GRNLKEILRQVEAFQL  122 (145)
Q Consensus        75 ~~~~~---~g~~~p~tfIID~dG~I~~~~~~~~~~-~~~~~ell~~i~~l~~  122 (145)
                      +....   .|.+.|++||||++|+|++.++.+... .+++++++++|+.++.
T Consensus       125 v~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~evl~~L~~l~~  176 (224)
T 3keb_A          125 VLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAIEKLLQEGEQ  176 (224)
T ss_dssp             CBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHHHHHHHHHHHH
T ss_pred             CccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHHHHHHHHHhhh
Confidence            98643   466789999999999999999877644 4689999999998875

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.77  E-value=1.1e-17  Score=121.44  Aligned_cols=104  Identities=17%  Similarity=0.222  Sum_probs=88.7

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEec-CchHHHHHhCCCccCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSD-STHAISKTYGCYLSSA   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD-~~~~va~~yg~~~~~~   80 (145)
                      |+.|++.|++++  ++|  .|++||+||.|+++.+++|+++   ++      ++  +||+++| .+++++++||+.....
T Consensus        58 C~~~~~~l~~~~--~~~--~~v~vv~is~d~~~~~~~~~~~---~~------~~--~~~~l~D~~~~~~~~~~gv~~~~~  122 (163)
T 1psq_A           58 CSTQTRRFNEEL--AGL--DNTVVLTVSMDLPFAQKRWCGA---EG------LD--NAIMLSDYFDHSFGRDYALLINEW  122 (163)
T ss_dssp             HHHHHHHHHHHT--TTC--TTEEEEEEESSCHHHHHHHHHH---HT------CT--TSEEEECTTTCHHHHHHTCBCTTT
T ss_pred             cHHHHHHHHHHH--HHc--CCcEEEEEECCCHHHHHHHHHh---cC------CC--CcEEecCCchhHHHHHhCCccccC
Confidence            999999999999  578  7999999999999999999986   54      42  5999999 8999999999985434


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCC-CCCCHHHHHHHHHhc
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQ-VGRNLKEILRQVEAF  120 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~-~~~~~~ell~~i~~l  120 (145)
                      |...|++||||++|+|++.+.+... ...+.+++++.|++|
T Consensus       123 g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~l  163 (163)
T 1psq_A          123 HLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKAL  163 (163)
T ss_dssp             CSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHHC
T ss_pred             CceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHhC
Confidence            5557999999999999999998643 345789999999865

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.76  E-value=2e-18  Score=127.50  Aligned_cols=103  Identities=16%  Similarity=0.200  Sum_probs=84.1

Q ss_pred             ChhHH-HHHHHHHhhhhhhhcCCcE-EEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCcc
Q psy17183          1 MDTKI-ACDVLKLVRKEILIVSPFQ-IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLS   78 (145)
Q Consensus         1 ~~t~e-~~~~~~~~~~~~f~~~gv~-vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~   78 (145)
                      .|+.| +|.|++++  ++|+++|++ |+|||.|+++.+++|+++   ++   +. +   +||+++|.+++++++||+...
T Consensus        58 ~C~~eh~p~l~~~~--~~~~~~g~~~vv~Is~d~~~~~~~~~~~---~~---~~-~---~fp~l~D~~~~~~~~ygv~~~  125 (171)
T 2pwj_A           58 VCSSKHVPPYKHNI--DKFKAKGVDSVICVAINDPYTVNAWAEK---IQ---AK-D---AIEFYGDFDGSFHKSLELTTD  125 (171)
T ss_dssp             THHHHTHHHHHHTH--HHHHHTTCSEEEEEESSCHHHHHHHHHH---TT---CT-T---TSEEEECTTCHHHHHHTCEEE
T ss_pred             CCCHHHHHHHHHHH--HHHHHCCCCEEEEEeCCCHHHHHHHHHH---hC---CC-C---ceEEEECCccHHHHHhCCccc
Confidence            39999 99999999  699999999 999999999999999986   54   11 3   699999999999999999753


Q ss_pred             CC----CC-cceEEEEECCCCcEEEEEeecCCCCC---CHHHHHHH
Q psy17183         79 SA----GH-SLRAYYIIDKRGYLRSMNVSDIQVGR---NLKEILRQ  116 (145)
Q Consensus        79 ~~----g~-~~p~tfIID~dG~I~~~~~~~~~~~~---~~~ell~~  116 (145)
                      ..    |. ..|.+|||| +|+|++.+++..+.++   +.+++|++
T Consensus       126 ~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~~~~~~~~~~~~~il~~  170 (171)
T 2pwj_A          126 LSAGLLGIRSERWSAYVV-DGKVKALNVEESPSDVKVSGAETILGQ  170 (171)
T ss_dssp             CTTTTCCEEECCEEEEEE-TTEEEEEEECSSTTCCSSSSHHHHHHH
T ss_pred             cccccCCcccceeEEEEE-CCEEEEEEeecCCCCCcccCHHHHHhc
Confidence            21    32 368899999 9999999999877654   35555543

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.76  E-value=1.1e-17  Score=121.87  Aligned_cols=103  Identities=14%  Similarity=0.133  Sum_probs=88.6

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC-chHHHHHhCCCccCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS-THAISKTYGCYLSSA   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~-~~~va~~yg~~~~~~   80 (145)
                      |+.|++.|+++++  +   .|++||+||.|+++.+++|+++   ++      ++  +||+++|. +++++++||+.....
T Consensus        62 C~~~~~~l~~~~~--~---~~~~vv~is~d~~~~~~~~~~~---~~------~~--~~~~l~D~~~~~~~~~~gv~~~~~  125 (166)
T 3p7x_A           62 CDQQTRKFNSDAS--K---EEGIVLTISADLPFAQKRWCAS---AG------LD--NVITLSDHRDLSFGENYGVVMEEL  125 (166)
T ss_dssp             HHHHHHHHHHHSC--T---TTSEEEEEESSCHHHHHHHHHH---HT------CS--SCEEEECTTTCHHHHHHTCEETTT
T ss_pred             cHHHHHHHHHHhh--c---CCCEEEEEECCCHHHHHHHHHH---cC------CC--ceEEccCCchhHHHHHhCCccccC
Confidence            9999999999994  4   7999999999999999999986   65      42  59999999 999999999986555


Q ss_pred             CCcceEEEEECCCCcEEEEEeecC-CCCCCHHHHHHHHHhc
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDI-QVGRNLKEILRQVEAF  120 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~-~~~~~~~ell~~i~~l  120 (145)
                      |...|++||||++|+|++.+.+.. ....+.+++++.|+++
T Consensus       126 g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~l  166 (166)
T 3p7x_A          126 RLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKNI  166 (166)
T ss_dssp             TEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHTC
T ss_pred             CceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhcC
Confidence            666899999999999999988764 3355789999998864

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.76  E-value=1.7e-17  Score=119.21  Aligned_cols=106  Identities=21%  Similarity=0.284  Sum_probs=93.1

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC--chHHHHHhCCCccC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS--THAISKTYGCYLSS   79 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~--~~~va~~yg~~~~~   79 (145)
                      |..+++.|.+++  ++|+..|++|++||.|+++..++|+++   ++      +   +||+++|.  ++++++.||+....
T Consensus        52 C~~~~~~l~~~~--~~~~~~~~~vv~is~d~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~~~v~~~~  117 (160)
T 1xvw_A           52 CQGELDQLRDHL--PEFENDDSAALAISVGPPPTHKIWATQ---SG------F---TFPLLSDFWPHGAVSQAYGVFNEQ  117 (160)
T ss_dssp             HHHHHHHHHHTG--GGTSSSSEEEEEEESCCHHHHHHHHHH---HT------C---CSCEEECTTTTTHHHHHTTCEETT
T ss_pred             hHHHHHHHHHHH--HHHHHCCcEEEEEeCCCHHHHHHHHHh---cC------C---CceEEecCCcChHHHHHcCCcccc
Confidence            999999999999  689888999999999999999999886   76      8   99999996  99999999997543


Q ss_pred             CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         80 AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        80 ~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|++.|++||||++|+|++.+.+........+++++.|++++
T Consensus       118 ~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  159 (160)
T 1xvw_A          118 AGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT  159 (160)
T ss_dssp             TTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHTC
T ss_pred             CCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhc
Confidence            354455999999999999999988655668999999999876

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.76  E-value=8.4e-18  Score=124.46  Aligned_cols=117  Identities=15%  Similarity=0.221  Sum_probs=94.3

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeC--------CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHh
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSV--------DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTY   73 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~--------D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~y   73 (145)
                      |..+++.|.+++  ++|..+|+++++|+.        |+.+..++|++.   ++      +   +||+++|.++++++.|
T Consensus        61 C~~~~~~l~~l~--~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~  126 (196)
T 2ywi_A           61 VKHVQHELVRLA--NDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEE---LG------Y---PFPYLYDETQEVAKAY  126 (196)
T ss_dssp             HHHHHHHHHHHH--HHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHH---HT------C---CSCEEECSSCHHHHHH
T ss_pred             HHHHHHHHHHHH--HHHHhCCcEEEEEECCccccccccCHHHHHHHHHH---cC------C---CceEEECCchHHHHHh
Confidence            899999999999  689888999999998        678888899886   76      8   9999999999999999


Q ss_pred             CCCccCCCCcceEEEEECCCCcEEEEEeecC-----CCCCCHHHHHHHHHhccccc------cCCcccCCCCCCCC
Q psy17183         74 GCYLSSAGHSLRAYYIIDKRGYLRSMNVSDI-----QVGRNLKEILRQVEAFQLVD------STDTQCPVNWTTGQ  138 (145)
Q Consensus        74 g~~~~~~g~~~p~tfIID~dG~I~~~~~~~~-----~~~~~~~ell~~i~~l~~~~------~~~~~~p~~w~~~~  138 (145)
                      |+.      ..|++||||++|+|++.+.+..     ....+.+++.+.|+++....      ..+.+||++|.+|+
T Consensus       127 ~v~------~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~~~~~~~~~gC~~~~~~~~  196 (196)
T 2ywi_A          127 DAA------CTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRPVPEKQKPSIGCSIKWKPSA  196 (196)
T ss_dssp             TCC------EESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCCCCSCCCCCEEEECCCCCCC
T ss_pred             CCC------CCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCCCCCCCCCCCCceeeeeccCC
Confidence            987      3799999999999999865331     11125577777777664322      22477999999874

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.75  E-value=6.5e-18  Score=124.57  Aligned_cols=105  Identities=19%  Similarity=0.191  Sum_probs=86.1

Q ss_pred             hhH-HHHHHHHHhhhhhhhcCCc-EEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCC--ccEEecCchHHHHHhCCCc
Q psy17183          2 DTK-IACDVLKLVRKEILIVSPF-QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKI--VPLLSDSTHAISKTYGCYL   77 (145)
Q Consensus         2 ~t~-e~~~~~~~~~~~~f~~~gv-~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--fpllsD~~~~va~~yg~~~   77 (145)
                      |+. |+|.|++++  ++|+++|+ +||+||.|+++.+++|+++   ++      +   +  ||+++|.+++++++||+..
T Consensus        47 C~~~e~p~l~~~~--~~~~~~gv~~vv~Is~d~~~~~~~~~~~---~~------~---~~~fp~l~D~~~~~~~~~gv~~  112 (167)
T 2wfc_A           47 SSKTHLPGYVEQA--AAIHGKGVDIIACMAVNDSFVMDAWGKA---HG------A---DDKVQMLADPGGAFTKAVDMEL  112 (167)
T ss_dssp             HHHTHHHHHHHTH--HHHHHTTCCEEEEEESSCHHHHHHHHHH---TT------C---TTTSEEEECTTSHHHHHTTCEE
T ss_pred             CCHHHHHHHHHHH--HHHHHCCCCEEEEEeCCCHHHHHHHHHh---cC------C---CcceEEEECCCCcHHHHcCCcc
Confidence            999 999999999  69999999 9999999999999999997   66      7   7  9999999999999999874


Q ss_pred             cC---CC--CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         78 SS---AG--HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        78 ~~---~g--~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      ..   .|  .+.|++||| ++|+|++.++++.+.++++......++.|.
T Consensus       113 ~~~~~~g~~~~~p~t~lI-~~G~I~~~~~~~~~~~~~~~~~~~~~~~~~  160 (167)
T 2wfc_A          113 DLSAVLGNVRSKRYSLVI-EDGVVTKVNVEPDGKGLTCSLAPNILSQLG  160 (167)
T ss_dssp             CCHHHHSSCEECCEEEEE-ETTEEEEEEECTTSSSSSTTSHHHHHHHHC
T ss_pred             ccccccCcccceEEEEEE-eCCEEEEEEecCCCCcceeccHHHHHHHhc
Confidence            21   01  146999999 999999999988765555444444444443

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.75  E-value=5.7e-18  Score=123.42  Aligned_cols=101  Identities=20%  Similarity=0.270  Sum_probs=84.0

Q ss_pred             hh-HHHHHHHHHhhhhhhhcCCcE-EEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC
Q psy17183          2 DT-KIACDVLKLVRKEILIVSPFQ-IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS   79 (145)
Q Consensus         2 ~t-~e~~~~~~~~~~~~f~~~gv~-vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~   79 (145)
                      |+ .|+|.|++++  ++|+++|++ ||+||.|+++.+++|+++   ++      ++. +||+++|.+++++++||+....
T Consensus        51 C~~~e~~~l~~~~--~~~~~~~v~~vv~Is~d~~~~~~~~~~~---~~------~~~-~~~~l~D~~~~~~~~~gv~~~~  118 (162)
T 1tp9_A           51 CSLKHVPGFIEKA--GELKSKGVTEILCISVNDPFVMKAWAKS---YP------ENK-HVKFLADGSATYTHALGLELDL  118 (162)
T ss_dssp             HHHTHHHHHHHHH--HHHHHTTCCCEEEEESSCHHHHHHHHHT---CT------TCS-SEEEEECTTSHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHH--HHHHHCCCCEEEEEECCCHHHHHHHHHh---cC------CCC-CeEEEECCCchHHHHcCccccc
Confidence            89 8999999999  699999999 999999999999999986   54      310 4999999999999999997421


Q ss_pred             --CCC---cceEEEEECCCCcEEEEEeecCCCCC---CHHHHHHH
Q psy17183         80 --AGH---SLRAYYIIDKRGYLRSMNVSDIQVGR---NLKEILRQ  116 (145)
Q Consensus        80 --~g~---~~p~tfIID~dG~I~~~~~~~~~~~~---~~~ell~~  116 (145)
                        .|+   ..|++|||| +|+|++.++++ +.++   +.+++++.
T Consensus       119 ~~~g~~~~~~p~~~vid-~G~i~~~~~~~-~~~~~~~~~~~vl~~  161 (162)
T 1tp9_A          119 QEKGLGTRSRRFALLVD-DLKVKAANIEG-GGEFTVSSAEDILKD  161 (162)
T ss_dssp             TTTTSEEEECCEEEEEE-TTEEEEEEECS-SSCCSSCSHHHHHTT
T ss_pred             ccCCCCccceeEEEEEE-CCEEEEEEeeC-CCCCccCCHHHHHhh
Confidence              242   479999999 99999999988 6554   47777653

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.73  E-value=3.2e-17  Score=120.97  Aligned_cols=114  Identities=17%  Similarity=0.316  Sum_probs=90.1

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeC--------CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHh
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSV--------DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTY   73 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~--------D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~y   73 (145)
                      |..+++.|++++  ++|..+ +++|+||.        |+.+..++|++.   ++      +   +||++.|.++++++.|
T Consensus        48 C~~~~~~l~~l~--~~~~~~-~~~v~v~~d~~~~~~~d~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~  112 (188)
T 2cvb_A           48 VKGSIGELVALA--ERYRGK-VAFVGINANDYEKYPEDAPEKMAAFAEE---HG------I---FFPYLLDETQEVAKAY  112 (188)
T ss_dssp             HHTTHHHHHHHH--HHTTTT-EEEEEEECCCTTTCGGGSHHHHHHHHHH---HT------C---CSCEEECSSSHHHHHT
T ss_pred             HHHHHHHHHHHH--HHhhcC-eEEEEEEcCccccccccCHHHHHHHHHH---hC------C---CceEEECCcchHHHHc
Confidence            889999999999  689877 99999998        677888888886   76      8   9999999999999999


Q ss_pred             CCCccCCCCcceEEEEECCCCcEEEEEeecCC------CCCCHHHHHHHHHhccccc------cCCcccCCCCCCCC
Q psy17183         74 GCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQ------VGRNLKEILRQVEAFQLVD------STDTQCPVNWTTGQ  138 (145)
Q Consensus        74 g~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~------~~~~~~ell~~i~~l~~~~------~~~~~~p~~w~~~~  138 (145)
                      |+.      ..|++||||++|+|++.  +...      ...+.+++.+.|+++....      ..+.+||++|.+|+
T Consensus       113 ~v~------~~P~~~lid~~G~i~~~--g~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~~~~~~~~~gc~~~~~~~~  181 (188)
T 2cvb_A          113 RAL------RTPEVFLFDERRLLRYH--GRVNDNPKDPSKVQSHDLEAAIEALLRGEEPPLKEAPAIGCTIKWRPGN  181 (188)
T ss_dssp             TCC------EESEEEEECTTCBEEEE--ECSSSCTTCGGGCCCCHHHHHHHHHHTTCCCCSSCCCCCSEECCCCTTC
T ss_pred             CCC------CCCeEEEECCCCcEEEE--EecCCccccccccCHHHHHHHHHHHHcCCCCCcccCCCCceEEEecCCC
Confidence            987      37999999999999988  3321      1113456666666554322      23478999999884

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.72  E-value=2.1e-17  Score=120.36  Aligned_cols=102  Identities=16%  Similarity=0.177  Sum_probs=84.1

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC-chHHHHHhCCCccC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS-THAISKTYGCYLSS   79 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~-~~~va~~yg~~~~~   79 (145)
                      .|+.|++.|++++  ++|  .|++||+||.|+++.+++|+++   ++      ++  +||+++|. +++++++||+....
T Consensus        58 ~C~~e~~~l~~~~--~~~--~~v~vv~Is~d~~~~~~~~~~~---~~------~~--~~~~l~D~~~~~~~~~~gv~~~~  122 (165)
T 1q98_A           58 VCATSVRKFNQQA--AKL--SNTIVLCISADLPFAQARFCGA---EG------IE--NAKTVSTFRNHALHSQLGVDIQT  122 (165)
T ss_dssp             CCCHHHHHHHHHH--HHS--TTEEEEEEESSCHHHHTTCTTT---TT------CT--TEEEEECTTCTHHHHHTTCEECS
T ss_pred             ccHHHHHHHHHHH--HHc--CCCEEEEEeCCCHHHHHHHHHH---cC------CC--ceEEeeccccchHHHHhCceecc
Confidence            4999999999999  578  7999999999999998888875   54      51  49999998 89999999997432


Q ss_pred             ---CCCcceEEEEECCCCcEEEEEeecC-CCCCCHHHHHHHH
Q psy17183         80 ---AGHSLRAYYIIDKRGYLRSMNVSDI-QVGRNLKEILRQV  117 (145)
Q Consensus        80 ---~g~~~p~tfIID~dG~I~~~~~~~~-~~~~~~~ell~~i  117 (145)
                         .|...|++||||++|+|++.+.+.. ...++.+++++.|
T Consensus       123 ~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~~l~~l  164 (165)
T 1q98_A          123 GPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAALAVL  164 (165)
T ss_dssp             STTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHTT
T ss_pred             cccCCccceeEEEEcCCCEEEEEEeCCCCCCCCCHHHHHHhh
Confidence               2445699999999999999998643 3456788888765

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.71  E-value=1.1e-16  Score=116.88  Aligned_cols=103  Identities=19%  Similarity=0.270  Sum_probs=87.2

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEec-CchHHHHHhCCCccC-
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSD-STHAISKTYGCYLSS-   79 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD-~~~~va~~yg~~~~~-   79 (145)
                      |+.|++.|++++  ++|  .+++||+||.|+++.+++|+++   ++      +.  +||+++| .++++ ++||+.... 
T Consensus        63 C~~~~~~l~~~~--~~~--~~v~vv~Is~d~~~~~~~~~~~---~~------~~--~~~~l~D~~~~~~-~~~gv~~~~~  126 (171)
T 2yzh_A           63 CETETKKFNEIM--AGM--EGVDVTVVSMDLPFAQKRFCES---FN------IQ--NVTVASDFRYRDM-EKYGVLIGEG  126 (171)
T ss_dssp             HHHHHHHHHHHT--TTC--TTEEEEEEESSCHHHHHHHHHH---TT------CC--SSEEEECTTTCGG-GGGTCBBCSS
T ss_pred             hHHHHHHHHHHH--HHc--CCceEEEEeCCCHHHHHHHHHH---cC------CC--CeEEeecCccCcH-HHhCCEeccc
Confidence            999999999999  578  7999999999999999999986   64      42  5999999 89999 999997532 


Q ss_pred             --CCCcceEEEEECCCCcEEEEEeecCC-CCCCHHHHHHHHHhc
Q psy17183         80 --AGHSLRAYYIIDKRGYLRSMNVSDIQ-VGRNLKEILRQVEAF  120 (145)
Q Consensus        80 --~g~~~p~tfIID~dG~I~~~~~~~~~-~~~~~~ell~~i~~l  120 (145)
                        .|...|++||||++|+|++.+.++.. ...+.+++++.|++|
T Consensus       127 ~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~l  170 (171)
T 2yzh_A          127 ALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKEL  170 (171)
T ss_dssp             TTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred             ccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhh
Confidence              25557999999999999999987543 345789999999876

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.71  E-value=4.4e-17  Score=123.16  Aligned_cols=103  Identities=17%  Similarity=0.177  Sum_probs=86.4

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC-chHHHHHhCCCccC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS-THAISKTYGCYLSS   79 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~-~~~va~~yg~~~~~   79 (145)
                      .|+.|++.|++++  ++|  .|++||+||.|+++..++|+++   ++      +.  +||+++|. +++++++||+....
T Consensus        93 ~C~~e~~~l~~l~--~~~--~~v~vv~Is~D~~~~~~~~~~~---~~------~~--~f~~l~D~~~~~~~~~ygv~~~~  157 (200)
T 3zrd_A           93 VCAASVRKFNQLA--GEL--ENTVVLCISSDLPFAQSRFCGA---EG------LS--NVITLSTLRGADFKQAYGVAITE  157 (200)
T ss_dssp             CCCHHHHHHHHHH--HTS--TTEEEEEEESSCHHHHTTCTTT---TT------CT--TEEEEETTSCTHHHHHTTCEECS
T ss_pred             hhHHHHHHHHHHH--HHh--CCCEEEEEECCCHHHHHHHHHH---cC------CC--CceEEecCchHHHHHHhCceeec
Confidence            4999999999999  588  7999999999999999998775   43      32  69999999 99999999997543


Q ss_pred             ---CCCcceEEEEECCCCcEEEEEeecC-CCCCCHHHHHHHHH
Q psy17183         80 ---AGHSLRAYYIIDKRGYLRSMNVSDI-QVGRNLKEILRQVE  118 (145)
Q Consensus        80 ---~g~~~p~tfIID~dG~I~~~~~~~~-~~~~~~~ell~~i~  118 (145)
                         .|...|++||||++|+|++.+++.. ...++.++++++|+
T Consensus       158 ~~~~g~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~~~l~~Lk  200 (200)
T 3zrd_A          158 GPLAGLTARAVVVLDGQDNVIYSELVNEITTEPNYDAALAALK  200 (200)
T ss_dssp             STTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHHHC
T ss_pred             ccCCCccccEEEEECCCCeEEEEEecCCcccCCCHHHHHHhhC
Confidence               3556799999999999999998763 44567888888763

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.68  E-value=1.8e-16  Score=114.32  Aligned_cols=103  Identities=22%  Similarity=0.239  Sum_probs=83.7

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC-C
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS-A   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~-~   80 (145)
                      |+.|+|.|++++  ++|+++| +||+||.|+++.+++|+++   ++      +   +||+++|.++++++.||+.... .
T Consensus        51 C~~~~~~l~~~~--~~~~~~~-~vv~is~d~~~~~~~~~~~---~~------~---~~~~l~D~~~~~~~~~gv~~~p~~  115 (159)
T 2a4v_A           51 STRQASGFRDNY--QELKEYA-AVFGLSADSVTSQKKFQSK---QN------L---PYHLLSDPKREFIGLLGAKKTPLS  115 (159)
T ss_dssp             HHHHHHHHHHHH--HHHTTTC-EEEEEESCCHHHHHHHHHH---HT------C---SSEEEECTTCHHHHHHTCBSSSSS
T ss_pred             HHHHHHHHHHHH--HHHHhCC-cEEEEeCCCHHHHHHHHHH---hC------C---CceEEECCccHHHHHhCCcccccC
Confidence            999999999999  6899999 9999999999999999986   76      8   9999999999999999997421 2


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCC---CCCHHHHHHHHHhcc
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQV---GRNLKEILRQVEAFQ  121 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~---~~~~~ell~~i~~l~  121 (145)
                      | ..|++||| ++|+|++.+.+..+.   .+..+++++.+++++
T Consensus       116 g-~~~~~~li-~~G~i~~~~~g~~~~~~~~~~~~~l~~~l~~l~  157 (159)
T 2a4v_A          116 G-SIRSHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVAEKFK  157 (159)
T ss_dssp             C-BCCEEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             C-ccceEEEE-cCCEEEEEEccCCccccHHHHHHHHHHHHHHhh
Confidence            3 36799999 999999999875321   223455555555553

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.63  E-value=6.6e-16  Score=111.84  Aligned_cols=105  Identities=15%  Similarity=0.220  Sum_probs=87.3

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEec-CchHHHHHhCCCccCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSD-STHAISKTYGCYLSSA   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD-~~~~va~~yg~~~~~~   80 (145)
                      |..+++.|++++  ++|  .++++|+||.|+++..++|++.   ++      +.  +||+++| .++++++.||+.....
T Consensus        60 C~~~~~~l~~l~--~~~--~~~~vv~is~d~~~~~~~~~~~---~~------~~--~~~~~~d~~~~~~~~~~~v~~~~~  124 (167)
T 2jsy_A           60 CDAQTRRFNEEA--AKL--GDVNVYTISADLPFAQARWCGA---NG------ID--KVETLSDHRDMSFGEAFGVYIKEL  124 (167)
T ss_dssp             HHHTHHHHHHHH--HHH--SSCEEEEEECSSGGGTSCCGGG---SS------CT--TEEEEEGGGTCHHHHHTTCBBTTT
T ss_pred             hHHHHHHHHHHH--HHc--CCCEEEEEECCCHHHHHHHHHh---cC------CC--CceEeeCCchhHHHHHhCCccccC
Confidence            899999999999  578  7899999999998888888775   54      32  6999999 8999999999985444


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCC-CCCCHHHHHHHHHhcc
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQ-VGRNLKEILRQVEAFQ  121 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~-~~~~~~ell~~i~~l~  121 (145)
                      |...|++||||++|+|++.+.+... ...+.+++++.|++|.
T Consensus       125 g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll  166 (167)
T 2jsy_A          125 RLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKALV  166 (167)
T ss_dssp             CSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred             CceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence            5557999999999999999987643 2346789999998764

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.59  E-value=7.4e-15  Score=107.89  Aligned_cols=103  Identities=18%  Similarity=0.167  Sum_probs=81.0

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC-
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS-   79 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~-   79 (145)
                      .|..+++.|+++++  +   .+++||+||.|+++..++|+++   ++      +.  +||+++|.++++++.||+.... 
T Consensus        59 ~C~~~~~~l~~l~~--~---~~v~vv~Is~D~~~~~~~~~~~---~~------~~--~~~~l~D~~~~~~~~~gv~~~~~  122 (175)
T 1xvq_A           59 VCATSVRTFDERAA--A---SGATVLCVSKDLPFAQKRFCGA---EG------TE--NVMPASAFRDSFGEDYGVTIADG  122 (175)
T ss_dssp             CCCHHHHHHHHHHH--H---TTCEEEEEESSCHHHHTTCC-----------------CEEEEECTTSSHHHHTTCBBCSS
T ss_pred             hHHHHHHHHHHHHh--h---cCCEEEEEECCCHHHHHHHHHH---cC------CC--CceEeeCCHHHHHHHhCCccccc
Confidence            49999999999994  4   7899999999999999888875   54      41  5999999999999999997531 


Q ss_pred             --CCCcceEEEEECCCCcEEEEEeec-CCCCCCHHHHHHHHHh
Q psy17183         80 --AGHSLRAYYIIDKRGYLRSMNVSD-IQVGRNLKEILRQVEA  119 (145)
Q Consensus        80 --~g~~~p~tfIID~dG~I~~~~~~~-~~~~~~~~ell~~i~~  119 (145)
                        .|...|++||||++|+|++.+.+. .....+++++++.+++
T Consensus       123 ~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l~~  165 (175)
T 1xvq_A          123 PMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGA  165 (175)
T ss_dssp             TTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHH
T ss_pred             ccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHHHh
Confidence              344569999999999999999853 3334578888887764

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.59  E-value=1.4e-14  Score=103.08  Aligned_cols=100  Identities=15%  Similarity=0.093  Sum_probs=84.5

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC---chHHHHHhC--CC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS---THAISKTYG--CY   76 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~---~~~va~~yg--~~   76 (145)
                      |..+++.|.+++  ++|+..++++++|+.|+.+..++|+++   ++      +   +||++.|.   ..++++.||  +.
T Consensus        39 C~~~~~~l~~l~--~~~~~~~v~vv~v~~d~~~~~~~~~~~---~~------~---~~~~~~~~~~~~~~~~~~~~~~v~  104 (151)
T 3raz_A           39 CRKEMPAMSKWY--KAQKKGSVDMVGIALDTSDNIGNFLKQ---TP------V---SYPIWRYTGANSRNFMKTYGNTVG  104 (151)
T ss_dssp             HHHHHHHHHHHH--HTSCTTTEEEEEEESSCHHHHHHHHHH---SC------C---SSCEEEECCSCHHHHHHTTTCCSC
T ss_pred             HHHHHHHHHHHH--HHhccCCeEEEEEECCChHHHHHHHHH---cC------C---CCceEecCccchHHHHHHhCCccC
Confidence            899999999999  689889999999999999999999886   76      8   99999887   566888898  44


Q ss_pred             ccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcccccc
Q psy17183         77 LSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDS  125 (145)
Q Consensus        77 ~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~  125 (145)
                            ..|++||||++|+|++.+.|..    +.+++.+.|+++....+
T Consensus       105 ------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~l~~~~~  143 (151)
T 3raz_A          105 ------VLPFTVVEAPKCGYRQTITGEV----NEKSLTDAVKLAHSKCR  143 (151)
T ss_dssp             ------CSSEEEEEETTTTEEEECCSCC----CHHHHHHHHHHHHTC--
T ss_pred             ------CCCEEEEECCCCcEEEEECCCC----CHHHHHHHHHHHHHHhh
Confidence                  4799999999999999887764    46788888888876543

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.58  E-value=2.4e-14  Score=102.04  Aligned_cols=96  Identities=13%  Similarity=0.114  Sum_probs=83.6

Q ss_pred             hhHH-HHHHHHHhhhhhhhcCCcEEEEEeC-------CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchH-----
Q psy17183          2 DTKI-ACDVLKLVRKEILIVSPFQIIAVSV-------DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHA-----   68 (145)
Q Consensus         2 ~t~e-~~~~~~~~~~~~f~~~gv~vi~VS~-------D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~-----   68 (145)
                      |..| ++.|++++  ++|..+|+.+++||.       |+.+..++|.++   ++      +   +||++.|..+.     
T Consensus        45 C~~e~~~~l~~l~--~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~  110 (160)
T 3lor_A           45 CVNHGVPQAQKIH--RMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDE---FG------I---KFPVAVDMPREGQRIP  110 (160)
T ss_dssp             HHHTHHHHHHHHH--HHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHH---TT------C---CSCEEEECCCTTCSSC
T ss_pred             hhhhhhHHHHHHH--HHhCcCCcEEEEEeccccccccCCHHHHHHHHHH---cC------C---CCcEEECCccccchhh
Confidence            8886 99999999  689989999999997       688889999886   76      8   99999999998     


Q ss_pred             -HHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         69 -ISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        69 -va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                       +++.||+.      ..|++||||++|+|++.+.|..    +.+++.+.|+++-
T Consensus       111 ~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~i~~ll  154 (160)
T 3lor_A          111 STMKKYRLE------GTPSIILADRKGRIRQVQFGQV----DDFVLGLLLGSLL  154 (160)
T ss_dssp             HHHHHTTCC------SSSEEEEECTTSBEEEEEESCC----CHHHHHHHHHHHH
T ss_pred             hHHHhcccC------ccceEEEECCCCcEEEEecCcC----CHHHHHHHHHHHH
Confidence             99999987      3799999999999999988874    3567777777664

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.58  E-value=3.2e-14  Score=100.78  Aligned_cols=104  Identities=18%  Similarity=0.320  Sum_probs=85.3

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCC--HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDS--HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS   79 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~--~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~   79 (145)
                      |..+++.|.+++  ++|...++.+++|+.|.  .+..++|.+.   ++      +   +||+++|.++.+++.||+.   
T Consensus        43 C~~~~~~l~~~~--~~~~~~~~~~v~v~~d~~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~v~---  105 (154)
T 3kcm_A           43 CREEIPSMMRLN--AAMAGKPFRMLCVSIDEGGKVAVEEFFRK---TG------F---TLPVLLDADKRVGKLYGTT---  105 (154)
T ss_dssp             HHHHHHHHHHHH--HHTTTSSEEEEEEECCTTHHHHHHHHHHH---HC------C---CCCEEECTTCHHHHHHTCC---
T ss_pred             HHHHHHHHHHHH--HHhccCCeEEEEEEcCCcchHHHHHHHHH---cC------C---CeeEEecCchHHHHHhCCC---
Confidence            899999999998  68988899999999986  6777888876   76      8   9999999999999999997   


Q ss_pred             CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCC
Q psy17183         80 AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTD  127 (145)
Q Consensus        80 ~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~  127 (145)
                         ..|++||||++|+|++.+.|...  .+.+++.+.|+++......+
T Consensus       106 ---~~P~~~lid~~G~i~~~~~g~~~--~~~~~l~~~l~~l~~~~~~~  148 (154)
T 3kcm_A          106 ---GVPETFVIDRHGVILKKVVGAME--WDHPEVIAFLNNELSKAREG  148 (154)
T ss_dssp             ---SBCEEEEECTTSBEEEEEESCCC--TTSHHHHHHHHTC-------
T ss_pred             ---CCCeEEEECCCCcEEEEEcCCCc--cccHHHHHHHHHHHHHhhhc
Confidence               37999999999999999988753  34578999999888665443

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.58  E-value=2.8e-14  Score=101.71  Aligned_cols=96  Identities=13%  Similarity=0.097  Sum_probs=83.4

Q ss_pred             hhHH-HHHHHHHhhhhhhhcCCcEEEEEeC-------CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCch-----H
Q psy17183          2 DTKI-ACDVLKLVRKEILIVSPFQIIAVSV-------DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTH-----A   68 (145)
Q Consensus         2 ~t~e-~~~~~~~~~~~~f~~~gv~vi~VS~-------D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~-----~   68 (145)
                      |..| ++.|++++  ++|...++.+|+||.       ++.+..++|+++   ++      +   +||++.|.++     +
T Consensus        43 C~~~~~~~l~~l~--~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~  108 (158)
T 3eyt_A           43 CVMHGIPLAQKVR--AAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHE---YR------I---KFPVGVDQPGDGAMPR  108 (158)
T ss_dssp             HHHTHHHHHHHHH--HHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHH---TT------C---CSCEEEECCCSSSSCH
T ss_pred             hhhhhhHHHHHHH--HHhCcCCEEEEEEEecccccccCCHHHHHHHHHH---cC------C---CceEEEcCccchhhHH
Confidence            8897 99999999  689888999999995       588889999886   76      8   9999999988     7


Q ss_pred             HHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         69 ISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        69 va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      +++.||+.      ..|++||||++|+|++.+.|..    +.+++.+.|+++-
T Consensus       109 ~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~i~~ll  151 (158)
T 3eyt_A          109 TMAAYQMR------GTPSLLLIDKAGDLRAHHFGDV----SELLLGAEIATLL  151 (158)
T ss_dssp             HHHHTTCC------SSSEEEEECTTSEEEEEEESCC----CHHHHHHHHHHHH
T ss_pred             HHHHcCCC------CCCEEEEECCCCCEEEEEeCCC----CHHHHHHHHHHHh
Confidence            99999987      3799999999999999988864    3677777777765

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.57  E-value=6.3e-14  Score=99.07  Aligned_cols=101  Identities=14%  Similarity=0.132  Sum_probs=86.1

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC-CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD-SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      |..+++.|.+++  ++|...|+++++|+.| +.+..++|.+.   ++      +   +||+++|.++++++.||+.    
T Consensus        43 C~~~~~~l~~l~--~~~~~~~~~~v~v~~d~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~v~----  104 (152)
T 3gl3_A           43 CRQSFPWMNQMQ--AKYKAKGFQVVAVNLDAKTGDAMKFLAQ---VP------A---EFTVAFDPKGQTPRLYGVK----  104 (152)
T ss_dssp             HHHHHHHHHHHH--HHHGGGTEEEEEEECCSSHHHHHHHHHH---SC------C---CSEEEECTTCHHHHHTTCC----
T ss_pred             HHHHHHHHHHHH--HHhhcCCeEEEEEECCCCHHHHHHHHHH---cC------C---CCceeECCcchhHHHcCCC----
Confidence            899999999999  6899999999999998 56667778775   76      8   9999999999999999997    


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccc
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVD  124 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~  124 (145)
                        ..|++||||++|+|++.+.|..+  .+.+++.+.|+++....
T Consensus       105 --~~P~~~lid~~G~i~~~~~g~~~--~~~~~l~~~i~~~~~~~  144 (152)
T 3gl3_A          105 --GMPTSFLIDRNGKVLLQHVGFRP--ADKEALEQQILAALGGN  144 (152)
T ss_dssp             --SSSEEEEECTTSBEEEEEESCCT--TTHHHHHHHHHHHTC--
T ss_pred             --CCCeEEEECCCCCEEEEEccCCC--cCHHHHHHHHHHHHccc
Confidence              37999999999999999988643  35788888888877543

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.56  E-value=1.2e-14  Score=109.16  Aligned_cols=119  Identities=13%  Similarity=0.186  Sum_probs=81.4

Q ss_pred             hhHHHHHHHHHhhhhhhhc---CCcEEEEEeCC----CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEec---CchHHHH
Q psy17183          2 DTKIACDVLKLVRKEILIV---SPFQIIAVSVD----SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSD---STHAISK   71 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~---~gv~vi~VS~D----~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD---~~~~va~   71 (145)
                      |..+++.|++++  ++|.+   .+++||+||.|    +++.+++|++.   ++      .   +|+++.+   ..+++++
T Consensus        57 C~~~~~~l~~l~--~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~---~~------~---~~~~l~~~~d~~~~~~~  122 (200)
T 2b7k_A           57 CPDELDKLGLWL--NTLSSKYGITLQPLFITCDPARDSPAVLKEYLSD---FH------P---SILGLTGTFDEVKNACK  122 (200)
T ss_dssp             HHHHHHHHHHHH--HHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTT---SC------T---TCEEEECCHHHHHHHHH
T ss_pred             hHHHHHHHHHHH--HHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHH---cC------C---CceEEeCCHHHHHHHHH
Confidence            999999999998  57874   48999999998    68888999875   65      6   8988874   4678999


Q ss_pred             HhCCCccC-----CC-----CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCC
Q psy17183         72 TYGCYLSS-----AG-----HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWT  135 (145)
Q Consensus        72 ~yg~~~~~-----~g-----~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~  135 (145)
                      .||+....     .|     ...|++||||++|+|++.+.+..+.....+++.+.|++++. ..+.+.|+.+|-
T Consensus       123 ~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l~~l~~-~~~~~~~~~~~~  195 (200)
T 2b7k_A          123 KYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSYVP-AEQRAKQKEAWY  195 (200)
T ss_dssp             HTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHCCC-C-----------
T ss_pred             HcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHhhh-hhhcchhHHHHH
Confidence            99987210     01     12468999999999999987765443445777778888775 456788999996

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.53  E-value=8.8e-14  Score=100.54  Aligned_cols=105  Identities=11%  Similarity=0.144  Sum_probs=84.2

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCC--cEEEEEeCC----CHHHHHHHHHHHhhcCCCCCCCCCCCCc---cEEecCchHHHH
Q psy17183          1 MDTKIACDVLKLVRKEILIVSP--FQIIAVSVD----SHLAHLAWTKTLTATSSNRSAIDPSKIV---PLLSDSTHAISK   71 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~g--v~vi~VS~D----~~~~~~~~~~~~~~~~~~~~~~~~~~~f---pllsD~~~~va~   71 (145)
                      .|..+++.|.+++  ++|.+.|  ++||+||.|    +++.+++|+++   ++      +   +|   |+++|.++++++
T Consensus        48 ~C~~~~~~l~~l~--~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~---~~------~---~~~~~~~l~d~~~~~~~  113 (174)
T 1xzo_A           48 ICPPMTAHMTDLQ--KKLKAENIDVRIISFSVDPENDKPKQLKKFAAN---YP------L---SFDNWDFLTGYSQSEIE  113 (174)
T ss_dssp             CCCSHHHHHHHHH--HHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTT---SC------C---CGGGEEEEBCSCHHHHH
T ss_pred             hhHHHHHHHHHHH--HHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHH---cC------C---CCcceEEEeCCCHHHHH
Confidence            3889999999998  6888876  999999986    67888888875   66      7   88   999999999998


Q ss_pred             HhCCC-----c---c--CCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         72 TYGCY-----L---S--SAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        72 ~yg~~-----~---~--~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|++.     .   .  ......|++||||++|+|++.+.+...  .+.+++++.|++|.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~--~~~~~l~~~l~~ll  171 (174)
T 1xzo_A          114 EFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVEN--TPYDDIISDVKSAS  171 (174)
T ss_dssp             HHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSS--CCHHHHHHHHHHHT
T ss_pred             HHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCC--CCHHHHHHHHHHHH
Confidence            88741     0   0  011357899999999999999988643  35788999888775

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=6.7e-14  Score=99.36  Aligned_cols=92  Identities=13%  Similarity=0.203  Sum_probs=77.4

Q ss_pred             hhHHHHHHHHHhhhhhh-hcCCcEEEEEeCCC-HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC---chHHHHHhCCC
Q psy17183          2 DTKIACDVLKLVRKEIL-IVSPFQIIAVSVDS-HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS---THAISKTYGCY   76 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f-~~~gv~vi~VS~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~---~~~va~~yg~~   76 (145)
                      |..+++.|.+++  ++| +..|+++++||.|+ .+..++|.+.   ++      +   +||+++|.   ++++++.||+.
T Consensus        50 C~~~~~~l~~l~--~~~~~~~~~~~v~v~~d~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~~~~v~  115 (150)
T 3fw2_A           50 QKQSNSELREIY--KKYKKNKYIGMLGISLDVDKQQWKDAIKR---DT------L---DWEQVCDFGGLNSEVAKQYSIY  115 (150)
T ss_dssp             HHHHHHHHHHHH--HHHTTCSSEEEEEEECCSCHHHHHHHHHH---TT------C---CSEEECCSCGGGCHHHHHTTCC
T ss_pred             HHHHHHHHHHHH--HHhccCCCeEEEEEEcCCCHHHHHHHHHH---hC------C---CceEEEcCcccchHHHHHcCCC
Confidence            999999999999  689 88899999999985 4677777775   76      8   99999999   77999999987


Q ss_pred             ccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         77 LSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        77 ~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                            ..|++||||++|+|++.+.       +.+++.+.|+++
T Consensus       116 ------~~P~~~lid~~G~i~~~~~-------~~~~l~~~l~~l  146 (150)
T 3fw2_A          116 ------KIPANILLSSDGKILAKNL-------RGEELKKKIENI  146 (150)
T ss_dssp             ------SSSEEEEECTTSBEEEESC-------CHHHHHHHHHHH
T ss_pred             ------ccCeEEEECCCCEEEEccC-------CHHHHHHHHHHH
Confidence                  3799999999999998874       245666666554

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.52  E-value=8.4e-14  Score=98.12  Aligned_cols=91  Identities=12%  Similarity=0.133  Sum_probs=75.3

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC-CHHHHHHHHHHHhhcCCCCCCCCCCCCc-cEEecCc---hHHHHHhCCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD-SHLAHLAWTKTLTATSSNRSAIDPSKIV-PLLSDST---HAISKTYGCY   76 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~f-pllsD~~---~~va~~yg~~   76 (145)
                      |..+++.|.+++  ++|+..|++||+||.| +.+..++|.++   ++      +   +| ++++|..   +++++.||+.
T Consensus        47 C~~~~~~l~~l~--~~~~~~~~~vv~vs~d~~~~~~~~~~~~---~~------~---~~~~~~~d~~~~~~~~~~~~~v~  112 (143)
T 4fo5_A           47 SRARNVQLANEV--NKFGPDKIAMCSISMDEKESIFTETVKI---DK------L---DLSTQFHEGLGKESELYKKYDLR  112 (143)
T ss_dssp             HHHHHHHHHHHH--TTSCTTTEEEEEEECCSCHHHHHHHHHH---HT------C---CGGGEEECTTGGGSHHHHHTTGG
T ss_pred             HHHHHHHHHHHH--HHhCcCCEEEEEEEccCCHHHHHHHHHH---hC------C---CCceeeecccccchHHHHHcCCC
Confidence            899999999999  6899889999999998 55567777765   76      8   89 8999984   6899999997


Q ss_pred             ccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         77 LSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        77 ~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                            ..|++||||++|+|++...+       .+++.+.|+.
T Consensus       113 ------~~P~~~lid~~G~i~~~~~~-------~~~l~~~l~~  142 (143)
T 4fo5_A          113 ------KGFKNFLINDEGVIIAANVT-------PEKLTEILKA  142 (143)
T ss_dssp             ------GCCCEEEECTTSBEEEESCC-------HHHHHHHHTC
T ss_pred             ------CCCcEEEECCCCEEEEccCC-------HHHHHHHHHh
Confidence                  47999999999999987543       3566666654

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.50  E-value=1.9e-13  Score=100.24  Aligned_cols=103  Identities=12%  Similarity=0.118  Sum_probs=84.2

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCH--HHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSH--LAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS   79 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~   79 (145)
                      |..+++.|++++  ++|...+++|++||.|..  +..++|.++   ++      ++  .||+++|.++.+++.|++... 
T Consensus        75 C~~~~~~l~~l~--~~~~~~~~~vv~v~~d~~~~~~~~~~~~~---~~------~~--~~~~~~d~~~~~~~~~~~~~~-  140 (186)
T 1jfu_A           75 CRKEMPALDELQ--GKLSGPNFEVVAINIDTRDPEKPKTFLKE---AN------LT--RLGYFNDQKAKVFQDLKAIGR-  140 (186)
T ss_dssp             HHHHHHHHHHHH--HHHCBTTEEEEEEECCCSCTTHHHHHHHH---TT------CC--TTCCEECTTCHHHHHHHTTTC-
T ss_pred             HHHHHHHHHHHH--HHhccCCcEEEEEECCCCCHHHHHHHHHH---cC------CC--CCceEECCcchHHHHhccccc-
Confidence            899999999999  588888999999999853  677888886   65      51  499999999999999998632 


Q ss_pred             CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         80 AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        80 ~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                       ....|++||||++|+|++.+.|...  .+.+++++.|+++.
T Consensus       141 -~~~~P~~~lid~~G~i~~~~~g~~~--~~~~~l~~~l~~ll  179 (186)
T 1jfu_A          141 -ALGMPTSVLVDPQGCEIATIAGPAE--WASEDALKLIRAAT  179 (186)
T ss_dssp             -CSSSSEEEEECTTSBEEEEEESCCC--TTSHHHHHHHHHHH
T ss_pred             -cCCCCEEEEECCCCCEEEEEecCCc--cCHHHHHHHHHHHh
Confidence             1247999999999999999887643  34578888887775

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.49  E-value=4.3e-13  Score=94.93  Aligned_cols=97  Identities=15%  Similarity=0.180  Sum_probs=83.8

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC-CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD-SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      |..+++.|.+++  ++|...++.+++|+.| +.+..++|.+.   ++      +   +||++.|.++.+++.||+.    
T Consensus        41 C~~~~~~l~~~~--~~~~~~~v~vv~v~~d~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~v~----  102 (151)
T 2f9s_A           41 CKKEFPYMANQY--KHFKSQGVEIVAVNVGESKIAVHNFMKS---YG------V---NFPVVLDTDRQVLDAYDVS----  102 (151)
T ss_dssp             HHHHHHHHHHHH--HHHGGGTEEEEEEEESCCHHHHHHHHHH---HT------C---CSCEEEETTSHHHHHTTCC----
T ss_pred             HHHHHHHHHHHH--HHhccCCeEEEEEECCCCHHHHHHHHHH---cC------C---CceEEECCchHHHHhcCCC----
Confidence            899999999998  6898889999999986 56778888876   76      8   9999999999999999987    


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccc
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQL  122 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~  122 (145)
                        ..|++||||++|+|++.+.|..    +.+++.+.|+++..
T Consensus       103 --~~P~~~lid~~G~i~~~~~G~~----~~~~l~~~l~~ll~  138 (151)
T 2f9s_A          103 --PLPTTFLINPEGKVVKVVTGTM----TESMIHDYMNLIKP  138 (151)
T ss_dssp             --SSCEEEEECTTSEEEEEEESCC----CHHHHHHHHHHHSC
T ss_pred             --CCCeEEEECCCCcEEEEEeCCC----CHHHHHHHHHHHHh
Confidence              3799999999999999888763    46788888887764

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.49  E-value=2.9e-13  Score=99.15  Aligned_cols=99  Identities=11%  Similarity=0.118  Sum_probs=83.1

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCc------EEEEEeCCC--HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHh
Q psy17183          2 DTKIACDVLKLVRKEILIVSPF------QIIAVSVDS--HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTY   73 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv------~vi~VS~D~--~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~y   73 (145)
                      |..+++.|++++  ++|..+|+      ++++|+.|.  .+..++|.+.   ++      +   +||+++|.++.+++.|
T Consensus        74 C~~~~~~l~~l~--~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~  139 (183)
T 3lwa_A           74 CRSESDDLQIIH--EELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTD---NG------L---DYPSIYDPPFMTAASL  139 (183)
T ss_dssp             HHHHHHHHHHHH--HHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHH---TT------C---CSCEEECTTCGGGGGT
T ss_pred             HHHHHHHHHHHH--HHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHH---cC------C---CccEEECCcchHHHHh
Confidence            899999999999  68999999      999999986  8888899886   76      8   9999999999999999


Q ss_pred             CCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         74 GCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        74 g~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      |.+.   -...|++||||++|+|++.+.+..    +.+++.+.|+++.
T Consensus       140 ~~~~---v~~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~ll  180 (183)
T 3lwa_A          140 GGVP---ASVIPTTIVLDKQHRPAAVFLREV----TSKDVLDVALPLV  180 (183)
T ss_dssp             TTCC---TTCCSEEEEECTTSCEEEEECSCC----CHHHHHHHHHHHH
T ss_pred             ccCC---CCCCCeEEEECCCCcEEEEEcCCC----CHHHHHHHHHHHH
Confidence            8531   114799999999999999988763    4678888777653

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.48  E-value=6.2e-13  Score=92.53  Aligned_cols=92  Identities=10%  Similarity=0.210  Sum_probs=79.6

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC----CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCc
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD----SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYL   77 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D----~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~   77 (145)
                      |..+++.|.+++  ++|...++.+++|+.|    +.+..++|.+.   ++      +   +||++.|.++.+++.|++. 
T Consensus        49 C~~~~~~l~~~~--~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~v~-  113 (145)
T 3erw_A           49 CKKELPQFQSFY--DAHPSDSVKLVTVNLVNSEQNQQVVEDFIKA---NK------L---TFPIVLDSKGELMKEYHII-  113 (145)
T ss_dssp             HHHHHHHHHHHH--HHCCCSSEEEEEEECGGGSSCHHHHHHHHHH---TT------C---CSCEEECSSSHHHHHTTCC-
T ss_pred             HHHHHHHHHHHH--HHcCCCCEEEEEEEccCCcCCHHHHHHHHHH---cC------C---ceeEEEcCchhHHHhcCcC-
Confidence            899999999999  5888789999999985    67788888876   76      8   9999999999999999987 


Q ss_pred             cCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHH
Q psy17183         78 SSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQV  117 (145)
Q Consensus        78 ~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i  117 (145)
                           ..|++||||++|+|++.+.|..    +.+++.+.|
T Consensus       114 -----~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l  144 (145)
T 3erw_A          114 -----TIPTSFLLNEKGEIEKTKIGPM----TAEQLKEWT  144 (145)
T ss_dssp             -----EESEEEEECTTCCEEEEEESCC----CHHHHHHHH
T ss_pred             -----ccCeEEEEcCCCcEEEEEcCCc----CHHHHHHhh
Confidence                 4799999999999999888764    356666655

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.48  E-value=3.8e-13  Score=94.15  Aligned_cols=93  Identities=11%  Similarity=0.106  Sum_probs=76.5

Q ss_pred             hhHHHHHHHH---HhhhhhhhcCCcEEEEEeCC-CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHH--HhCC
Q psy17183          2 DTKIACDVLK---LVRKEILIVSPFQIIAVSVD-SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISK--TYGC   75 (145)
Q Consensus         2 ~t~e~~~~~~---~~~~~~f~~~gv~vi~VS~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~--~yg~   75 (145)
                      |..+++.|.+   ++  ++|+..|+++++||.| +.+..++|.+.   ++      +   +||+++|.++.++.  .||+
T Consensus        42 C~~~~~~l~~~~~l~--~~~~~~~~~~v~v~~d~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~~~v  107 (142)
T 3ewl_A           42 CRKFEKLFAEIPAFV--EMVENGTLRVLAIYPDENREEWATKAVY---MP------Q---GWIVGWNKAGDIRTRQLYDI  107 (142)
T ss_dssp             HHHHHHHHHTCHHHH--HHHHHTSEEEEEEECSSCHHHHHHHHTT---SC------T---TCEEEECTTCHHHHTTCSCC
T ss_pred             HHHHHHHHHHhHHHH--HHhccCCeEEEEEEecCCHHHHHHHHHH---cC------C---CcceeeCCccchhhHHHcCC
Confidence            8899999988   77  5888899999999998 56677777764   76      8   99999999999987  8998


Q ss_pred             CccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         76 YLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        76 ~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .      ..|++||||++|+|++..       .+.+++.+.|++++
T Consensus       108 ~------~~P~~~lid~~G~i~~~~-------~~~~~l~~~l~~~~  140 (142)
T 3ewl_A          108 R------ATPTIYLLDGRKRVILKD-------TSMEQLIDYLATQA  140 (142)
T ss_dssp             C------SSSEEEEECTTCBEEECS-------CCHHHHHHHHHC--
T ss_pred             C------CCCeEEEECCCCCEEecC-------CCHHHHHHHHHHHc
Confidence            7      379999999999998721       34678888887654

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.48  E-value=3.3e-13  Score=96.46  Aligned_cols=102  Identities=15%  Similarity=0.183  Sum_probs=79.7

Q ss_pred             hhHHHHHHHHHhhhhhhhc----CCcEEEEEeCCC----HHHHHHHHHHHhhcCCCCCCCCCCCCccEEe---cCchHHH
Q psy17183          2 DTKIACDVLKLVRKEILIV----SPFQIIAVSVDS----HLAHLAWTKTLTATSSNRSAIDPSKIVPLLS---DSTHAIS   70 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~----~gv~vi~VS~D~----~~~~~~~~~~~~~~~~~~~~~~~~~~fplls---D~~~~va   70 (145)
                      |..+++.|++++  ++|+.    .+++|++||.|+    ++..++|++.   ++      +   +||++.   |..++++
T Consensus        39 C~~~~~~l~~l~--~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~---~~------~---~~~~l~~~~d~~~~~~  104 (164)
T 2ggt_A           39 CPEELEKMIQVV--DEIDSITTLPDLTPLFISIDPERDTKEAIANYVKE---FS------P---KLVGLTGTREEVDQVA  104 (164)
T ss_dssp             HHHHHHHHHHHH--HHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHT---TC------S---SCEEEECCHHHHHHHH
T ss_pred             hHHHHHHHHHHH--HHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHH---cC------C---CeEEEeCCHHHHHHHH
Confidence            999999999999  58876    599999999875    7788899886   66      7   899994   6678899


Q ss_pred             HHhCCCccC-----CC----CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         71 KTYGCYLSS-----AG----HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        71 ~~yg~~~~~-----~g----~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      +.||+...-     .+    ...|++||||++|+|++.+.+..    +.+++.+.|+++.
T Consensus       105 ~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~ll  160 (164)
T 2ggt_A          105 RAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNK----RKGEIAASIATHM  160 (164)
T ss_dssp             HTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTC----CHHHHHHHHHHHH
T ss_pred             HhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCC----CHHHHHHHHHHHH
Confidence            999987310     00    00128999999999999987653    4678888887764

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.47  E-value=7.7e-13  Score=93.50  Aligned_cols=98  Identities=14%  Similarity=0.212  Sum_probs=83.9

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEe--CCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCcc
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVS--VDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLS   78 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS--~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~   78 (145)
                      .|..+++.|++++  ++|...++.+++|+  .|+.+..++|.+.   ++      +   +||++.|.+.++++.||+.  
T Consensus        42 ~C~~~~~~l~~l~--~~~~~~~~~vv~v~~~~~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~i~--  105 (153)
T 2l5o_A           42 GCVSEMPKIIKTA--NDYKNKNFQVLAVAQPIDPIESVRQYVKD---YG------L---PFTVMYDADKAVGQAFGTQ--  105 (153)
T ss_dssp             THHHHHHHHHHHH--HHGGGTTEEEEEEECTTSCHHHHHHHHHH---TT------C---CSEEEECSSCHHHHHHTCC--
T ss_pred             cHHHHHHHHHHHH--HHhccCCeEEEEEecCCCCHHHHHHHHHH---cC------C---CceEEcCchHHHHHHcCCC--
Confidence            3899999999998  68998899999999  5688888898886   76      8   9999999999999999987  


Q ss_pred             CCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccc
Q psy17183         79 SAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQL  122 (145)
Q Consensus        79 ~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~  122 (145)
                          ..|++||||++|+|++.+.|.    .+.+++.+.|+++-.
T Consensus       106 ----~~P~~~lid~~G~i~~~~~g~----~~~~~l~~~l~~ll~  141 (153)
T 2l5o_A          106 ----VYPTSVLIGKKGEILKTYVGE----PDFGKLYQEIDTAWR  141 (153)
T ss_dssp             ----SSSEEEEECSSSCCCEEEESS----CCHHHHHHHHHHHHH
T ss_pred             ----ccCeEEEECCCCcEEEEEcCC----CCHHHHHHHHHHHHH
Confidence                379999999999999988775    346777777776643

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.46  E-value=9.7e-13  Score=94.74  Aligned_cols=104  Identities=16%  Similarity=0.196  Sum_probs=81.1

Q ss_pred             ChhHHHHHHHHHhhhhhhhc----CCcEEEEEeCC----CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC---chHH
Q psy17183          1 MDTKIACDVLKLVRKEILIV----SPFQIIAVSVD----SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS---THAI   69 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~----~gv~vi~VS~D----~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~---~~~v   69 (145)
                      .|..+++.|++++  ++|.+    .+++||+||.|    +++..++|++.   ++      +   +|++++|.   .+.+
T Consensus        41 ~C~~~~~~l~~l~--~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~---~~------~---~~~~l~~~~~~~~~~  106 (171)
T 2rli_A           41 ICPDELEKLVQVV--RQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQD---FH------P---RLLGLTGSTKQVAQA  106 (171)
T ss_dssp             SHHHHHHHHHHHH--HHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHT---TC------T---TCCEEECCHHHHHHH
T ss_pred             hhHHHHHHHHHHH--HHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHH---cC------C---CeEEEeCCHHHHHHH
Confidence            4999999999999  58864    68999999987    57888899886   66      7   89999975   3589


Q ss_pred             HHHhCCCccC-----CC----CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccc
Q psy17183         70 SKTYGCYLSS-----AG----HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQL  122 (145)
Q Consensus        70 a~~yg~~~~~-----~g----~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~  122 (145)
                      ++.||+...-     .+    ...|++||||++|+|++.+.+..    +.+++.+.|+++..
T Consensus       107 ~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~ll~  164 (171)
T 2rli_A          107 SHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSR----SAEQISDSVRRHMA  164 (171)
T ss_dssp             HHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSC----CHHHHHHHHHHHHH
T ss_pred             HHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCC----CHHHHHHHHHHHHH
Confidence            9999987310     00    02359999999999999987653    46778887777654

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.46  E-value=1.8e-13  Score=98.04  Aligned_cols=98  Identities=17%  Similarity=0.276  Sum_probs=83.2

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG   81 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g   81 (145)
                      |..+++.|.+++  ++|...++.+++|+.|.  ..++|.+.   ++      +   +||+++|.++++++.||+.     
T Consensus        56 C~~~~~~l~~~~--~~~~~~~~~~v~v~~d~--~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~v~-----  114 (158)
T 3hdc_A           56 CRDEMPSMDRLV--KSFPKGDLVVLAVNVEK--RFPEKYRR---AP------V---SFNFLSDATGQVQQRYGAN-----  114 (158)
T ss_dssp             HHHHHHHHHHHH--HHSSTTSEEEEEEECSS--SCCGGGGG---CC------C---SCEEEECTTSHHHHHTTCC-----
T ss_pred             HHHHHHHHHHHH--HHcccCCeEEEEEeCCH--HHHHHHHH---cC------C---CceEEECchHHHHHHhCCC-----
Confidence            899999999999  68988899999999987  45556554   65      8   9999999999999999997     


Q ss_pred             CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcccc
Q psy17183         82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLV  123 (145)
Q Consensus        82 ~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~  123 (145)
                       ..|++||||++|+|++.+.|..+  .+..++++.+++.+..
T Consensus       115 -~~P~~~lid~~G~i~~~~~G~~~--~~~~~~~~~~~~~~~~  153 (158)
T 3hdc_A          115 -RLPDTFIVDRKGIIRQRVTGGIE--WDAPKVVSYLKSLEGH  153 (158)
T ss_dssp             -SSSEEEEECTTSBEEEEEESCCC--TTSHHHHHHHHTTC--
T ss_pred             -CcceEEEEcCCCCEEEEEeCCCc--cchHHHHHHHHhhccc
Confidence             37999999999999999998765  3568899988887754

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.46  E-value=9.2e-13  Score=93.61  Aligned_cols=81  Identities=14%  Similarity=0.087  Sum_probs=70.6

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCC-CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC---chHHHHHhCCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVD-SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS---THAISKTYGCY   76 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~---~~~va~~yg~~   76 (145)
                      .|..+++.|.+++  ++|...|+++++|+.| +.+..++|.+.   ++      +   +||+++|.   ..++++.||+.
T Consensus        43 ~C~~~~~~l~~l~--~~~~~~~~~vv~v~~d~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~~~~v~  108 (152)
T 2lrn_A           43 WCRKETPYLLKTY--NAFKDKGFTIYGVSTDRREEDWKKAIEE---DK------S---YWNQVLLQKDDVKDVLESYCIV  108 (152)
T ss_dssp             THHHHHHHHHHHH--HHHTTTTEEEEEEECCSCHHHHHHHHHH---HT------C---CSEEEEECHHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHHHH--HHhccCCeEEEEEEccCCHHHHHHHHHH---hC------C---CCeEEecccchhHHHHHHhCCC
Confidence            3999999999998  6899889999999998 46666777665   66      8   99999999   79999999987


Q ss_pred             ccCCCCcceEEEEECCCCcEEEEEe
Q psy17183         77 LSSAGHSLRAYYIIDKRGYLRSMNV  101 (145)
Q Consensus        77 ~~~~g~~~p~tfIID~dG~I~~~~~  101 (145)
                            ..|++||||++|+|++.+.
T Consensus       109 ------~~P~~~lid~~G~i~~~~~  127 (152)
T 2lrn_A          109 ------GFPHIILVDPEGKIVAKEL  127 (152)
T ss_dssp             ------SSCEEEEECTTSEEEEECC
T ss_pred             ------cCCeEEEECCCCeEEEeeC
Confidence                  3799999999999998874

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.46  E-value=3.6e-13  Score=94.22  Aligned_cols=96  Identities=17%  Similarity=0.168  Sum_probs=80.5

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCC-CHHHHHHHHHHHhhcCCCCCCCCCCCC-ccEEecCchH--HHHHhCCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVD-SHLAHLAWTKTLTATSSNRSAIDPSKI-VPLLSDSTHA--ISKTYGCY   76 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~-fpllsD~~~~--va~~yg~~   76 (145)
                      .|..+++.|.+++  ++|...|+.+++|+.| +.+..++|.+.   ++      +   + ||+++|..+.  +++.||+.
T Consensus        45 ~C~~~~~~l~~l~--~~~~~~~~~~v~v~~d~~~~~~~~~~~~---~~------~---~~~~~~~d~~~~~~~~~~~~i~  110 (148)
T 3hcz_A           45 HCQQETPKLYDWW--LKNRAKGIQVYAANIERKDEEWLKFIRS---KK------I---GGWLNVRDSKNHTDFKITYDIY  110 (148)
T ss_dssp             TTCSHHHHHHHHH--HHHGGGTEEEEEEECCSSSHHHHHHHHH---HT------C---TTSEEEECTTCCCCHHHHHCCC
T ss_pred             cHHHHHHHHHHHH--HHhccCCEEEEEEEecCCHHHHHHHHHH---cC------C---CCceEEeccccchhHHHhcCcC
Confidence            3899999999998  6899889999999998 56777888776   65      7   6 9999999988  99999987


Q ss_pred             ccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         77 LSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        77 ~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                            ..|++||||++|+|++.+.+.    .+.+++++.+.++
T Consensus       111 ------~~P~~~lid~~G~i~~~~~g~----~~~~~~l~~l~~~  144 (148)
T 3hcz_A          111 ------ATPVLYVLDKNKVIIAKRIGY----ENLDDFLVQYEKS  144 (148)
T ss_dssp             ------SSCEEEEECTTCBEEEESCCG----GGHHHHHHHHHHH
T ss_pred             ------CCCEEEEECCCCcEEEecCCH----HHHHHHHHHHHHH
Confidence                  379999999999999987765    3466777666543

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.45  E-value=1.8e-12  Score=90.49  Aligned_cols=95  Identities=19%  Similarity=0.263  Sum_probs=80.5

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC------CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD------SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGC   75 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D------~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~   75 (145)
                      |..+++.|.+++  ++|... +.+++|+.|      +.+..++|.+.   ++      +   +||++.|.++++++.||+
T Consensus        44 C~~~~~~l~~l~--~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~v  108 (148)
T 2b5x_A           44 CKEAMPQVNEFR--DKYQDQ-LNVVAVHMPRSEDDLDPGKIKETAAE---HD------I---TQPIFVDSDHALTDAFEN  108 (148)
T ss_dssp             HHHHHHHHHHHH--HHHTTT-SEEEEEECCCSTTTSSHHHHHHHHHH---TT------C---CSCEEECSSCHHHHHTCC
T ss_pred             HHHHhHHHHHHH--HHhcCC-cEEEEEEcCCCccccCHHHHHHHHHH---cC------C---CcceEECCchhHHHHhCC
Confidence            899999999998  578766 999999987      57788888876   76      8   999999999999999998


Q ss_pred             CccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         76 YLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        76 ~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .      ..|++||||++|+|++.+.|..    +.+++.+.|+++-
T Consensus       109 ~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~~l  144 (148)
T 2b5x_A          109 E------YVPAYYVFDKTGQLRHFQAGGS----GMKMLEKRVNRVL  144 (148)
T ss_dssp             C------CSSEEEEECTTCBEEEEEESCS----TTHHHHHHHHHHH
T ss_pred             C------CCCEEEEECCCCcEEEEecCCC----CHHHHHHHHHHHH
Confidence            7      3799999999999999888763    3467777776654

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.44  E-value=1.8e-12  Score=89.40  Aligned_cols=95  Identities=12%  Similarity=0.050  Sum_probs=79.2

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCC-HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDS-HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      |..+++.|.+++  ++|.  ++.+++|+.|+ .+..++|.+.   ++      +   +||++.|.+.++++.||+.    
T Consensus        39 C~~~~~~l~~~~--~~~~--~~~~~~v~~~~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~i~----   98 (136)
T 1lu4_A           39 CNAEAPSLSQVA--AANP--AVTFVGIATRADVGAMQSFVSK---YN------L---NFTNLNDADGVIWARYNVP----   98 (136)
T ss_dssp             HHHHHHHHHHHH--HHCT--TSEEEEEECSSCHHHHHHHHHH---HT------C---CSEEEECTTSHHHHHTTCC----
T ss_pred             HHHHHHHHHHHH--HHCC--CcEEEEEEcCCCHHHHHHHHHH---cC------C---CceEEECCchhHHHhcCCC----
Confidence            899999999998  5776  89999999875 8888888886   76      8   9999999999999999987    


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                        ..|++||||++|+|+ .+.+. ....+.+++.+.|+++
T Consensus        99 --~~P~~~lid~~G~i~-~~~~~-~g~~~~~~l~~~l~~l  134 (136)
T 1lu4_A           99 --WQPAFVFYRADGTST-FVNNP-TAAMSQDELSGRVAAL  134 (136)
T ss_dssp             --SSSEEEEECTTSCEE-EECCS-SSCCCHHHHHHHHHHC
T ss_pred             --CCCEEEEECCCCcEE-EEEcC-CCccCHHHHHHHHHHH
Confidence              379999999999999 66611 1123578888888775

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.43  E-value=1.2e-12  Score=93.61  Aligned_cols=92  Identities=13%  Similarity=0.172  Sum_probs=73.2

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHH-HHHHHHHHhhcCCCCCCCCCCCCccEEecCchH---HHHHhCCCc
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLA-HLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHA---ISKTYGCYL   77 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~---va~~yg~~~   77 (145)
                      |..+++.|.+++  ++|+++|++|++||.|+... .++|..     +      +   +||+++|.++.   +++.||+. 
T Consensus        50 C~~~~~~l~~l~--~~~~~~~~~vv~i~~d~~~~~~~~~~~-----~------~---~~~~~~d~~~~~~~~~~~~~v~-  112 (152)
T 2lrt_A           50 SAAHNLALRELY--NKYASQGFEIYQISLDGDEHFWKTSAD-----N------L---PWVCVRDANGAYSSYISLYNVT-  112 (152)
T ss_dssp             HHHHHHHHHHHH--HHHGGGTEEEEEEECSCCHHHHHHHHT-----T------C---SSEEEECSSGGGCHHHHHHTCC-
T ss_pred             hHHHHHHHHHHH--HHhccCCeEEEEEEccCCHHHHHHHHh-----C------C---CceEEECCCCcchHHHHHcCcc-
Confidence            899999999999  68998899999999986543 233322     2      7   89999999987   99999987 


Q ss_pred             cCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         78 SSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        78 ~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                           ..|++||||++|+|++.+.|.    .+.++.+..+..
T Consensus       113 -----~~P~~~lid~~G~i~~~~~g~----~~~e~~~~~~~~  145 (152)
T 2lrt_A          113 -----NLPSVFLVNRNNELSARGENI----KDLDEAIKKLLE  145 (152)
T ss_dssp             -----SCSEEEEEETTTEEEEETTTC----SCHHHHHHHHHG
T ss_pred             -----cCceEEEECCCCeEEEecCCH----HHHHHHHHHHHh
Confidence                 379999999999999987765    345565554443

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.42  E-value=1e-12  Score=96.39  Aligned_cols=80  Identities=20%  Similarity=0.317  Sum_probs=69.7

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeC-CCHHHHHHHHHHHhhcCCCCCCCCCCCCcc-EEecCchHHHHHhCCCccC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSV-DSHLAHLAWTKTLTATSSNRSAIDPSKIVP-LLSDSTHAISKTYGCYLSS   79 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~fp-llsD~~~~va~~yg~~~~~   79 (145)
                      |..+++.|+++++  +    |+.|++||. |+.+..++|.+.   ++      +   +|+ +++|.++.+++.||+.   
T Consensus        73 C~~~~~~l~~l~~--~----~v~vv~vs~~d~~~~~~~~~~~---~~------~---~~~~~~~d~~~~~~~~~~v~---  131 (176)
T 3kh7_A           73 CRVEHPELTRLAE--Q----GVVIYGINYKDDNAAAIKWLNE---LH------N---PYLLSISDADGTLGLDLGVY---  131 (176)
T ss_dssp             HHHHHHHHHHHHH--T----TCEEEEEEESCCHHHHHHHHHH---TT------C---CCSEEEEETTCHHHHHHTCC---
T ss_pred             HHHHHHHHHHHHH--C----CCEEEEEeCCCCHHHHHHHHHH---cC------C---CCceEEECCcchHHHHcCCC---
Confidence            8999999999883  3    899999994 778888899886   76      7   888 5899999999999997   


Q ss_pred             CCCcceEEEEECCCCcEEEEEeecCC
Q psy17183         80 AGHSLRAYYIIDKRGYLRSMNVSDIQ  105 (145)
Q Consensus        80 ~g~~~p~tfIID~dG~I~~~~~~~~~  105 (145)
                         ..|++||||++|+|++.+.+..+
T Consensus       132 ---~~P~~~lid~~G~i~~~~~g~~~  154 (176)
T 3kh7_A          132 ---GAPETYLIDKQGIIRHKIVGVVD  154 (176)
T ss_dssp             ---SSCEEEEECTTCBEEEEEESCCC
T ss_pred             ---CCCeEEEECCCCeEEEEEcCCCC
Confidence               37999999999999999988753

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.42  E-value=2.1e-12  Score=92.20  Aligned_cols=97  Identities=14%  Similarity=0.145  Sum_probs=80.0

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC------CHHHHHHHHHHHhhcCCCCCCCCCCCC-ccEEecCchHHHHHhC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD------SHLAHLAWTKTLTATSSNRSAIDPSKI-VPLLSDSTHAISKTYG   74 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D------~~~~~~~~~~~~~~~~~~~~~~~~~~~-fpllsD~~~~va~~yg   74 (145)
                      |..+++.|.+++  ++|+..|++||+||.|      +.+..++|.+.   ++      +   + ||++.|.++++++.||
T Consensus        53 C~~~~~~l~~l~--~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~---~~------~---~~~~~~~d~~~~~~~~~~  118 (164)
T 2h30_A           53 CLSELGQAEKWA--QDAKFSSANLITVASPGFLHEKKDGEFQKWYAG---LN------Y---PKLPVVTDNGGTIAQNLN  118 (164)
T ss_dssp             HHHHHHHHHHHH--TCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTT---SC------C---TTSCEEECTTCHHHHHTT
T ss_pred             HHHHHHHHHHHH--HHcccCCcEEEEEEcCCCccccCHHHHHHHHHh---CC------C---CcceEEEcCchHHHHHcC
Confidence            899999999999  6898899999999974      34455565543   44      6   5 9999999999999999


Q ss_pred             CCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccc
Q psy17183         75 CYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQL  122 (145)
Q Consensus        75 ~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~  122 (145)
                      +.      ..|++||||++|+|++.+.|..    +.+++.+.|+++..
T Consensus       119 v~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~i~~~~~  156 (164)
T 2h30_A          119 IS------VYPSWALIGKDGDVQRIVKGSI----NEAQALALIRNPNA  156 (164)
T ss_dssp             CC------SSSEEEEECTTSCEEEEEESCC----CHHHHHHHHHCTTC
T ss_pred             CC------ccceEEEECCCCcEEEEEcCCC----CHHHHHHHHHHHHH
Confidence            87      3799999999999999888753    46788888877653

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.42  E-value=1.3e-12  Score=91.92  Aligned_cols=90  Identities=8%  Similarity=0.085  Sum_probs=72.5

Q ss_pred             hhHHHHHHHH---HhhhhhhhcCCcEEEEEeCCCH-HHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchH--HHHHhCC
Q psy17183          2 DTKIACDVLK---LVRKEILIVSPFQIIAVSVDSH-LAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHA--ISKTYGC   75 (145)
Q Consensus         2 ~t~e~~~~~~---~~~~~~f~~~gv~vi~VS~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~--va~~yg~   75 (145)
                      |..++|.|.+   ++  ++|+..+++||+||.|.. +..++|.+   +++      +   +||.+.|.++.  +++.|++
T Consensus        46 C~~~~~~l~~~~~l~--~~~~~~~~~vi~i~~d~~~~~~~~~~~---~~~------~---~~~~~~d~~~~~~~~~~~~v  111 (142)
T 3eur_A           46 CAEMIEGLKASPVIN--GFTAAKKLKVLSIYPDEELDEWKKHRN---DFA------K---EWTNGYDKELVIKNKNLYDL  111 (142)
T ss_dssp             HHHHHHHHHHCHHHH--HHHHTTSEEEEEEECSSCHHHHHHHGG---GSC------T---TSEEEECTTCHHHHTTCSCC
T ss_pred             HHHHHHHHhhhHHHH--HHhccCCeEEEEEEcCCCHHHHHHHHH---hcc------c---ccccccCccchhhhhhhcCC
Confidence            9999999999   88  689889999999999864 44444444   466      7   89999999876  7888988


Q ss_pred             CccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHH
Q psy17183         76 YLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE  118 (145)
Q Consensus        76 ~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~  118 (145)
                      .      ..|++||||++|+|++...+       .+++.+.|+
T Consensus       112 ~------~~P~~~lid~~G~i~~~~~~-------~~~l~~~l~  141 (142)
T 3eur_A          112 R------AIPTLYLLDKNKTVLLKDAT-------LQKVEQYLA  141 (142)
T ss_dssp             T------TCSEEEEECTTCBEEEEEEC-------HHHHHHHHH
T ss_pred             C------cCCeEEEECCCCcEEecCCC-------HHHHHHHHh
Confidence            7      37999999999999998764       356666554

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.42  E-value=1e-12  Score=93.11  Aligned_cols=96  Identities=14%  Similarity=0.179  Sum_probs=82.7

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeC---CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEec---CchHHHHHhCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSV---DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSD---STHAISKTYGC   75 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~---D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD---~~~~va~~yg~   75 (145)
                      |..+++.|.+++  ++|   ++++++|+.   |+.+..++|.+.   ++      +   +||+++|   ....+++.||+
T Consensus        45 C~~~~~~l~~l~--~~~---~v~~v~v~~d~~~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~~~~v  107 (154)
T 3ia1_A           45 CKAEFPGLHRVA--EET---GVPFYVISREPRDTREVVLEYMKT---YP------R---FIPLLASDRDRPHEVAARFKV  107 (154)
T ss_dssp             HHHHHHHHHHHH--HHH---CCCEEEEECCTTCCHHHHHHHHTT---CT------T---EEECBCCSSCCHHHHHTTSSB
T ss_pred             HHHHHHHHHHHH--HHc---CCeEEEEeCCCcccHHHHHHHHHH---cC------C---CcccccccccchHHHHHHhCC
Confidence            899999999999  577   899999999   778888888775   66      8   9999999   88999999998


Q ss_pred             CccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccc
Q psy17183         76 YLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVD  124 (145)
Q Consensus        76 ~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~  124 (145)
                      .      ..|++||||++|+|++.+.|..    +.+++.+.|+++....
T Consensus       108 ~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~~~~~~  146 (154)
T 3ia1_A          108 L------GQPWTFVVDREGKVVALFAGRA----GREALLDALLLAGADL  146 (154)
T ss_dssp             C------SSCEEEEECTTSEEEEEEESBC----CHHHHHHHHHHTTCCC
T ss_pred             C------cccEEEEECCCCCEEEEEcCCC----CHHHHHHHHHhccCcc
Confidence            7      4799999999999999988763    4788999998887543

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.42  E-value=2.2e-12  Score=105.71  Aligned_cols=108  Identities=15%  Similarity=0.079  Sum_probs=88.2

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC------CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD------SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGC   75 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D------~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~   75 (145)
                      |..+++.|.+++  ++|+..++.||+||.|      +++..++|+++   ++      +   +||++.|.+.++++.|++
T Consensus        97 C~~~~p~L~~l~--~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~---~~------l---~fpv~~D~~~~l~~~ygV  162 (352)
T 2hyx_A           97 CQRAIPHVVGWY--QAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAAN---LG------I---SYPIALDNNYATWTNYRN  162 (352)
T ss_dssp             HHHHHHHHHHHH--HHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHH---HT------C---CSCEEECTTSHHHHHTTC
T ss_pred             HHHHHHHHHHHH--HHhhcCCeEEEEEECCcccccCCHHHHHHHHHH---cC------C---CccEEeCCcHHHHHHcCC
Confidence            999999999999  6899889999999974      57788888876   76      8   999999999999999998


Q ss_pred             CccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCC
Q psy17183         76 YLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVN  133 (145)
Q Consensus        76 ~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~  133 (145)
                      .      ..|++||||++|+|++.+.|..    +.+++.+.|+++......+...|..
T Consensus       163 ~------~~Pt~~lID~~G~Iv~~~~G~~----~~~~l~~~I~~lL~e~~~~~~lpap  210 (352)
T 2hyx_A          163 R------YWPAEYLIDATGTVRHIKFGEG----DYNVTETLVRQLLNDAKPGVKLPQP  210 (352)
T ss_dssp             C------EESEEEEECTTSBEEEEEESBC----CHHHHHHHHHHHHHHHSTTCCCCSC
T ss_pred             C------ccCEEEEEeCCCeEEEEEcCCC----CHHHHHHHHHHHHhhccCCCCCCCC
Confidence            7      4799999999999999988764    3677777777765443333444444

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.41  E-value=4.4e-13  Score=96.47  Aligned_cols=102  Identities=18%  Similarity=0.202  Sum_probs=83.1

Q ss_pred             hhHHHHHHHHHhhhhhhhcC---CcEEEEEeCC----CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCc---hHHHH
Q psy17183          2 DTKIACDVLKLVRKEILIVS---PFQIIAVSVD----SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDST---HAISK   71 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~---gv~vi~VS~D----~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~---~~va~   71 (145)
                      |..+++.|++++  ++|..+   +++||+||.|    +++..++|+++   ++      +   +||+++|..   +++++
T Consensus        51 C~~~~~~l~~~~--~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~---~~------~---~~~~l~d~~~~~~~~~~  116 (172)
T 2k6v_A           51 CPTTLLALKRAY--EKLPPKAQERVQVIFVSVDPERDPPEVADRYAKA---FH------P---SFLGLSGSPEAVREAAQ  116 (172)
T ss_dssp             HHHHHHHHHHHH--TTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHH---HC------T---TEEEECCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHH--HHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHH---hC------C---CcEEEeCCHHHHHHHHH
Confidence            999999999999  688775   7999999975    57888999886   76      7   999999998   79999


Q ss_pred             HhCCCccCC--------C-CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         72 TYGCYLSSA--------G-HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        72 ~yg~~~~~~--------g-~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .||+.....        + ...|++|||| +|+|++.+.+..  ..+.+++++.|+++
T Consensus       117 ~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~~--~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          117 TFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPDK--AEATDRVVADLQAL  171 (172)
T ss_dssp             HHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHHH--HTCHHHHHHHHHHC
T ss_pred             hcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCCC--CCCHHHHHHHHHHh
Confidence            999853210        0 1469999999 999999988764  22578898888775

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.41  E-value=2.9e-12  Score=89.53  Aligned_cols=94  Identities=12%  Similarity=0.166  Sum_probs=78.2

Q ss_pred             ChhHHHHHHHHHhhhhhh-hcCCcEEEEEeCCC-HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC---chHHHHHhCC
Q psy17183          1 MDTKIACDVLKLVRKEIL-IVSPFQIIAVSVDS-HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS---THAISKTYGC   75 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f-~~~gv~vi~VS~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~---~~~va~~yg~   75 (145)
                      .|..+++.|.+++  ++| ...|+.+++|+.|. .+..++|.+.   ++      +   +||++.|.   ...+++.||+
T Consensus        47 ~C~~~~~~l~~l~--~~~~~~~~~~~v~v~~d~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~~~~v  112 (148)
T 3fkf_A           47 PQPEANAELKRLN--KEYKKNKNFAMLGISLDIDREAWETAIKK---DT------L---SWDQVCDFTGLSSETAKQYAI  112 (148)
T ss_dssp             CCHHHHHHHHHHH--HHTTTCTTEEEEEEECCSCHHHHHHHHHH---TT------C---CSEEECCSCGGGCHHHHHTTC
T ss_pred             HHHHHhHHHHHHH--HHhcCCCCeEEEEEECCCCHHHHHHHHHH---cC------C---CceEEEccCCcchHHHHhcCC
Confidence            3999999999999  689 88899999999984 5566777765   76      8   99999999   7899999998


Q ss_pred             CccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         76 YLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        76 ~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .      ..|++||||++|+|++.+.       +.+++.+.|+++-
T Consensus       113 ~------~~P~~~lid~~G~i~~~~~-------~~~~l~~~l~~ll  145 (148)
T 3fkf_A          113 L------TLPTNILLSPTGKILARDI-------QGEALTGKLKELL  145 (148)
T ss_dssp             C------SSSEEEEECTTSBEEEESC-------CHHHHHHHHHHHC
T ss_pred             C------CcCEEEEECCCCeEEEecC-------CHHHHHHHHHHHH
Confidence            8      3799999999999998765       3567777776653

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.41  E-value=4.2e-12  Score=90.57  Aligned_cols=101  Identities=14%  Similarity=0.232  Sum_probs=81.1

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCC-HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDS-HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      |..+++.|.+++  ++|...|+.+++|+.|+ .+..++|.+.   ++      +   +||++.|.. ++++.|+......
T Consensus        49 C~~~~~~l~~l~--~~~~~~~v~~v~v~~d~~~~~~~~~~~~---~~------~---~~~~~~~~~-~~~~~~~~~~~~~  113 (165)
T 3or5_A           49 CRSEIPDMVQVQ--KTWASRGFTFVGIAVNEQLPNVKNYMKT---QG------I---IYPVMMATP-ELIRAFNGYIDGG  113 (165)
T ss_dssp             HHHHHHHHHHHH--HHHTTTTEEEEEEECSCCHHHHHHHHHH---HT------C---CSCEEECCH-HHHHHHHTTSTTC
T ss_pred             HHHHHHHHHHHH--HHhccCCeEEEEEECCCCHHHHHHHHHH---cC------C---CCceEecCH-HHHHHHhhhhccC
Confidence            899999999999  68998999999999875 7778888876   76      8   999999976 8999996443211


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      -...|++||||++|+|++.+.|..    +.+++.+.|+++-
T Consensus       114 i~~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~~l  150 (165)
T 3or5_A          114 ITGIPTSFVIDASGNVSGVIVGPR----SKADFDRIVKMAL  150 (165)
T ss_dssp             SCSSSEEEEECTTSBEEEEECSCC----CHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCcEEEEEcCCC----CHHHHHHHHHHHH
Confidence            124799999999999999887764    3677777776664

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.40  E-value=9.4e-13  Score=97.62  Aligned_cols=97  Identities=10%  Similarity=0.136  Sum_probs=76.5

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHHHHHH-HHHhhcCCCCCCCCCCCCccEEe--cCchHH
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAHLAWT-KTLTATSSNRSAIDPSKIVPLLS--DSTHAI   69 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~~~~~-~~~~~~~~~~~~~~~~~~fplls--D~~~~v   69 (145)
                      .|..|++.|++++  ++|..+|++||+||.|        +++..++|+ ++   ++      +   +||+++  |.++.+
T Consensus        62 ~C~~~~~~l~~l~--~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~---~~------~---~~p~l~~~D~~~~~  127 (190)
T 2vup_A           62 YTKGGYETATTLY--NKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTK---FK------A---EFPIMAKINVNGEN  127 (190)
T ss_dssp             THHHHHHHHHHHH--HHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHH---HC------C---CSCBBCCCBSSSTT
T ss_pred             ccHHHHHHHHHHH--HHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHh---cC------C---CeEEEeecccCccc
Confidence            4999999999999  6899899999999987        688889998 65   66      8   999997  677665


Q ss_pred             HH-H--------hCCCccCCCCcce------EEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         70 SK-T--------YGCYLSSAGHSLR------AYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        70 a~-~--------yg~~~~~~g~~~p------~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      ++ .        ||+.      ..|      ++||||++|+|++.+.+..    +.+++.+.|+++-
T Consensus       128 ~~~~~~~l~~~~~~v~------~~P~i~~~~~~~lid~~G~i~~~~~g~~----~~~~l~~~i~~ll  184 (190)
T 2vup_A          128 AHPLYEYMKKTKPGIL------KTKAIKWNFTSFLIDRDGVPVERFSPGA----SVKDIEKKLIPLL  184 (190)
T ss_dssp             BCHHHHHHHHHSCCGG------GCCSCCSTTCEEEECTTSCEEEEECTTC----CHHHHHHHHHHHH
T ss_pred             ccHHHHHHHhhcCCcC------CCccccccceEEEECCCCcEEEEECCCC----CHHHHHHHHHHHH
Confidence            43 2        3543      245      9999999999999987753    3567777776654

>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A

Probab=99.39  E-value=2.2e-12  Score=98.20  Aligned_cols=93  Identities=22%  Similarity=0.252  Sum_probs=74.6

Q ss_pred             hhH-HHHHHHHHhhhhhh-hcCCc-EEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCcc
Q psy17183          2 DTK-IACDVLKLVRKEIL-IVSPF-QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLS   78 (145)
Q Consensus         2 ~t~-e~~~~~~~~~~~~f-~~~gv-~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~   78 (145)
                      |+. ++|.|.+.+  ++| +.+|+ +|++||+|+++++++|.+.   .+..  ...   .+++|+|.+++++++||+...
T Consensus        85 CS~~hlPgf~~~~--d~~~k~kGvd~I~ciSVND~FVm~AW~k~---~~~~--~~~---~i~~laD~~~eftkalGl~~~  154 (199)
T 4h86_A           85 CTVSHIPGYINYL--DELVKEKEVDQVIVVTVDNPFANQAWAKS---LGVK--DTT---HIKFASDPGCAFTKSIGFELA  154 (199)
T ss_dssp             HHHTTHHHHHHHH--HHHHHHSCCCEEEEEESSCHHHHHHHHHH---TTCC--CCS---SEEEEECGGGHHHHHTTCEEE
T ss_pred             CChhhChHHHHHH--HHHHHhcCCcEEEEEEcCCHHHHHHHHHH---hccc--ccc---cccccCCcchHHHHhcCceee
Confidence            877 589999999  554 78898 6999999999999999987   3200  014   699999999999999998654


Q ss_pred             CCC---CcceEEEEECCCCcEEEEEeecCC
Q psy17183         79 SAG---HSLRAYYIIDKRGYLRSMNVSDIQ  105 (145)
Q Consensus        79 ~~g---~~~p~tfIID~dG~I~~~~~~~~~  105 (145)
                      ..+   .+.|.++||| ||+|.+.++.+.+
T Consensus       155 ~~~gg~RS~Rya~IVd-DGvV~~~~vE~~p  183 (199)
T 4h86_A          155 VGDGVYWSGRWAMVVE-NGIVTYAAKETNP  183 (199)
T ss_dssp             EETTEEEECSEEEEEE-TTEEEEEEECSST
T ss_pred             cCCCcceeeEEEEEEE-CCEEEEEEEeCCC
Confidence            322   2678999998 9999999997643

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.38  E-value=1.2e-12  Score=96.27  Aligned_cols=101  Identities=12%  Similarity=0.038  Sum_probs=76.1

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEe--cCchHHH
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLS--DSTHAIS   70 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~~~~~~~~~~~~~~~~~~~~~~~fplls--D~~~~va   70 (145)
                      .|..+++.|++++  ++|..+|++||+||.|        +++..++|++.   ++      +   +||+++  |.++..+
T Consensus        61 ~C~~~~~~l~~l~--~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~---~~------~---~~p~~~~~d~~~~~~  126 (183)
T 2obi_A           61 KTEVNYTQLVDLH--ARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAG---YN------V---KFDMFSKICVNGDDA  126 (183)
T ss_dssp             THHHHHHHHHHHH--HHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHT---TT------C---CSEEBCCCCCSSTTS
T ss_pred             CcHHHHHHHHHHH--HHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHH---cC------C---CceEEeeeccCCcch
Confidence            4999999999999  6899899999999975        67888888875   76      8   999997  7777654


Q ss_pred             H-Hh----------CCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         71 K-TY----------GCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        71 ~-~y----------g~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      . .|          |+... .-...|++||||++|+|++.+.+..    +.+++.+.|+++
T Consensus       127 ~~~~~~l~~~~~~~g~~~~-~i~~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~i~~l  182 (183)
T 2obi_A          127 HPLWKWMKIQPKGKGILGN-AIKWNFTKFLIDKNGCVVKRYGPME----EPLVIEKDLPHY  182 (183)
T ss_dssp             CHHHHHHHTSTTTCCSSSS-SCCSTTCEEEECTTSCEEEEECTTS----CTHHHHTTSGGG
T ss_pred             hHHHHHhhccCCCCCcccc-cccccceEEEECCCCCEEEEeCCCC----CHHHHHHHHHHh
Confidence            3 34          32210 0012589999999999999987753    346777766654

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.38  E-value=8.3e-13  Score=97.53  Aligned_cols=100  Identities=12%  Similarity=0.024  Sum_probs=73.1

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEe--cCchHHH
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLS--DSTHAIS   70 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~~~~~~~~~~~~~~~~~~~~~~~fplls--D~~~~va   70 (145)
                      .|..|++.|++++  ++|+++|++||+||.|        +++..++|+++   ++      +   +||+++  |.++..+
T Consensus        63 ~C~~~~~~l~~l~--~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~---~~------~---~~p~~~~~d~~~~~~  128 (185)
T 2gs3_A           63 KTEVNYTQLVDLH--ARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAG---YN------V---KFDMFSKICVNGDDA  128 (185)
T ss_dssp             THHHHHHHHHHHH--HHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHH---TT------C---CSEEBCCCBSSSTTB
T ss_pred             chHHHHHHHHHHH--HHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHH---cC------C---CCeeeeeeccCChhh
Confidence            4999999999999  6899999999999975        46778888875   76      8   899997  6666654


Q ss_pred             H-Hh----------CCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         71 K-TY----------GCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        71 ~-~y----------g~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      . .|          |+... .-...|++||||++|+|++.+.+..+    .+++.+.|++
T Consensus       129 ~~~~~~l~~~~~~~g~~~~-~i~~~P~~~lid~~G~i~~~~~g~~~----~~~l~~~i~~  183 (185)
T 2gs3_A          129 HPLWKWMKIQPKGKGILGN-AIKWNFTKFLIDKNGCVVKRYGPMEE----PLVIEKDLPH  183 (185)
T ss_dssp             CHHHHHHTTSGGGCCSSSS-SCCSSCCEEEECTTSCEEEEECTTSC----GGGGGGGHHH
T ss_pred             hHHHHHHHhhcccccccCC-cccccceEEEECCCCCEEEeeCCCCC----HHHHHHHHHH
Confidence            3 34          32200 00025899999999999999877532    3455555544

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.36  E-value=1.5e-11  Score=84.03  Aligned_cols=95  Identities=20%  Similarity=0.254  Sum_probs=77.5

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEE------eCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAV------SVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGC   75 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~V------S~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~   75 (145)
                      |..+++.|.+++  ++ ...++.+++|      +.++.+..++|.+.   ++      +.  +||+++|.++++++.||+
T Consensus        37 C~~~~~~l~~~~--~~-~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~---~~------~~--~~~~~~d~~~~~~~~~~v  102 (138)
T 4evm_A           37 CLASLPDTDEIA--KE-AGDDYVVLTVVSPGHKGEQSEADFKNWYKG---LD------YK--NLPVLVDPSGKLLETYGV  102 (138)
T ss_dssp             HHHHHHHHHHHH--HT-CTTTEEEEEEECTTSTTCCCHHHHHHHHTT---CC------CT--TCCEEECTTCHHHHHTTC
T ss_pred             HHHHHHHHHHHH--HH-hCCCcEEEEEEcCCCCchhhHHHHHHHHhh---cC------CC--CeeEEECcchHHHHHcCc
Confidence            899999999998  35 4568999999      34567777777764   54      21  799999999999999998


Q ss_pred             CccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         76 YLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        76 ~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .      ..|++||||++|+|++.+.|..    +.+++.+.|+++
T Consensus       103 ~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~l  137 (138)
T 4evm_A          103 R------SYPTQAFIDKEGKLVKTHPGFM----EKDAILQTLKEL  137 (138)
T ss_dssp             C------SSSEEEEECTTCCEEEEEESCC----CHHHHHHHHHHC
T ss_pred             c------cCCeEEEECCCCcEEEeecCCC----cHHHHHHHHHhh
Confidence            7      3799999999999999988763    468888888776

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.36  E-value=2.2e-12  Score=92.63  Aligned_cols=100  Identities=14%  Similarity=0.236  Sum_probs=75.3

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHHHHHHHHHhhcCCCCCCCCCCCCccEE--ecCchHHH
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAHLAWTKTLTATSSNRSAIDPSKIVPLL--SDSTHAIS   70 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~~~~~~~~~~~~~~~~~~~~~~~fpll--sD~~~~va   70 (145)
                      -|..+++.|++++  ++|+.+|++||+||.|        +.+..++|++.  +++      +   +||++  .|.++.++
T Consensus        46 ~C~~~~~~l~~l~--~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~--~~~------~---~~~~~~~~d~~~~~~  112 (170)
T 2p5q_A           46 MTNSNYAEMNQLY--EKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCT--RFK------S---EFPIFDKIDVNGENA  112 (170)
T ss_dssp             THHHHHHHHHHHH--HHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHH--HTC------C---CSCBBCCCBSSSTTB
T ss_pred             ccHHHHHHHHHHH--HHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHH--hcC------C---CceeEeeeccCCCch
Confidence            3999999999999  6899889999999985        67788888872  266      8   89999  68877664


Q ss_pred             H-H--------hCCCccCCCCcce---EEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         71 K-T--------YGCYLSSAGHSLR---AYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        71 ~-~--------yg~~~~~~g~~~p---~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      . .        ||+.    +...|   ++||||++|+|++.+.+..+    .+++.+.|+++.
T Consensus       113 ~~~~~~l~~~~~~~~----~~~~p~~~~~~lid~~G~i~~~~~g~~~----~~~l~~~i~~ll  167 (170)
T 2p5q_A          113 SPLYRFLKLGKWGIF----GDDIQWNFAKFLVNKDGQVVDRYYPTTS----PLSLERDIKQLL  167 (170)
T ss_dssp             CHHHHHHHTHHHHTT----CSCCCSTTCEEEECTTSCEEEEECTTSC----GGGGHHHHHHHT
T ss_pred             HHHHHHHHhcCCCcc----CCcccccccEEEECCCCCEEEeeCCCCC----HHHHHHHHHHHh
Confidence            2 2        3552    11356   99999999999999887543    345666665543

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.35  E-value=9.2e-12  Score=91.05  Aligned_cols=106  Identities=9%  Similarity=0.017  Sum_probs=80.7

Q ss_pred             hhHHHHHHHHHhhhhhhhc--CCcEEEEEeCC---CHHHHHHHHHHHhhcCCCCCCCCCCCCcc---EE--ec--CchHH
Q psy17183          2 DTKIACDVLKLVRKEILIV--SPFQIIAVSVD---SHLAHLAWTKTLTATSSNRSAIDPSKIVP---LL--SD--STHAI   69 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~--~gv~vi~VS~D---~~~~~~~~~~~~~~~~~~~~~~~~~~~fp---ll--sD--~~~~v   69 (145)
                      |+.|++.|++++  ++|.+  .+++||+||.|   +++.+++|+++   ++      +   +||   ++  .|  ...++
T Consensus        44 C~~~~~~l~~~~--~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~---~~------~---~~~~w~~l~~~~~~~~~~~  109 (170)
T 3me7_A           44 CPLITKSLLKVI--PKLGTPGKDFWVITFTFDPKDTLEDIKRFQKE---YG------I---DGKGWKVVKAKTSEDLFKL  109 (170)
T ss_dssp             HHHHHHHHHTTH--HHHCCBTTTBEEEEEECCTTCCHHHHHHHHHH---TT------C---CSSSEEEEEESSHHHHHHH
T ss_pred             hHHHHHHHHHHH--HHhhhcCCceEEEEEECCCCCCHHHHHHHHHH---cC------C---CCCCeEEEeCCCHHHHHHH
Confidence            899999999999  58865  56999999986   68888999886   65      4   444   43  23  46789


Q ss_pred             HHHhCCCccC--CC-CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccc
Q psy17183         70 SKTYGCYLSS--AG-HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVD  124 (145)
Q Consensus        70 a~~yg~~~~~--~g-~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~  124 (145)
                      +++||+....  .+ ...|++||||++|+|++.+.+..   .+.++++++|+++....
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~---~~~~~i~~~l~~~~~~~  164 (170)
T 3me7_A          110 LDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVN---YNYLEFVNALRLARGEG  164 (170)
T ss_dssp             HHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSS---CCHHHHHHHHHHHTTCS
T ss_pred             HHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCC---CCHHHHHHHHHHhhccc
Confidence            9998875321  11 23689999999999999987653   45899999998887543

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.35  E-value=1.4e-11  Score=88.35  Aligned_cols=94  Identities=16%  Similarity=0.158  Sum_probs=78.2

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCC-------------------CHHHHHHHHHHHhhcCCCCCCCCCCCCccE
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVD-------------------SHLAHLAWTKTLTATSSNRSAIDPSKIVPL   61 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~fpl   61 (145)
                      .|..+++.|.+++  ++|.  ++.|++|+.|                   +.+..++|.+.   ++      ++  +||+
T Consensus        51 ~C~~~~~~l~~l~--~~~~--~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~--~~~~  115 (165)
T 3ha9_A           51 SCVYMADLLDRLT--EKYR--EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIAN---YG------DP--SWIM  115 (165)
T ss_dssp             THHHHHHHHHHHH--HHCT--TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHH---HS------CT--TSEE
T ss_pred             chhhhHHHHHHHH--HHcC--CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHH---cC------CC--CeeE
Confidence            4999999999998  5787  9999999987                   77788888876   54      43  7999


Q ss_pred             EecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         62 LSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        62 lsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      +.| ++++++.|++.      ..|++||||++|+|++  .+..+   +.+++.+.|+++.
T Consensus       116 ~~d-~~~~~~~~~v~------~~P~~~lid~~G~i~~--~g~~~---~~~~l~~~l~~l~  163 (165)
T 3ha9_A          116 VMD-DGSLVEKFNVR------SIDYIVIMDKSSNVLY--AGTTP---SLGELESVIKSVQ  163 (165)
T ss_dssp             EEC-CSHHHHHTTCC------SSSEEEEEETTCCEEE--EEESC---CHHHHHHHHHHC-
T ss_pred             EeC-hHHHHHHhCCC------CceEEEEEcCCCcEEE--eCCCC---CHHHHHHHHHHHh
Confidence            999 99999999987      3799999999999998  55531   4678888888764

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.34  E-value=4.7e-12  Score=90.79  Aligned_cols=101  Identities=11%  Similarity=0.106  Sum_probs=74.1

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHHHHH-HHHHhhcCCCCCCCCCCCCccEEe--cCchHH
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAHLAW-TKTLTATSSNRSAIDPSKIVPLLS--DSTHAI   69 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~~~~-~~~~~~~~~~~~~~~~~~~fplls--D~~~~v   69 (145)
                      .|..+++.|++++  ++|.++|++||+||.|        +.+..++| .+.   ++      +   +||+++  |.++.+
T Consensus        45 ~C~~~~~~l~~l~--~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~---~~------~---~~~~~~~~d~~~~~  110 (169)
T 2v1m_A           45 ATDKNYRQLQEMH--TRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEK---YG------V---QFDMFSKIKVNGSD  110 (169)
T ss_dssp             THHHHHHHHHHHH--HHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHH---HC------C---CSEEBCCCCCSSTT
T ss_pred             chHHHHHHHHHHH--HHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHh---cC------C---CCceEEEEeecCcc
Confidence            3999999999999  6899899999999985        46788888 465   66      8   999996  777776


Q ss_pred             HH-Hh--------CCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         70 SK-TY--------GCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        70 a~-~y--------g~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +. .|        |+.... -...|++||||++|+|++.+.+..+    .+++.+.|+++
T Consensus       111 ~~~~~~~l~~~~~~~~~~~-i~~~P~~~lid~~G~i~~~~~g~~~----~~~l~~~i~~l  165 (169)
T 2v1m_A          111 ADDLYKFLKSRQHGTLTNN-IKWNFSKFLVDRQGQPVKRYSPTTA----PYDIEGDIMEL  165 (169)
T ss_dssp             SCHHHHHHHHHSCCSSSCS-CCSTTCEEEECTTSCEEEEECTTSC----GGGGHHHHHHH
T ss_pred             ccHHHHHHHhhcCCccCCc-ccccceEEEECCCCCEEEEcCCCCC----HHHHHHHHHHH
Confidence            53 34        433100 0125899999999999999887643    34455555544

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.33  E-value=1.3e-11  Score=94.54  Aligned_cols=104  Identities=10%  Similarity=0.040  Sum_probs=72.0

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHHHHHHHHHh---hcCCCCCCCCCCCCccEEecC--chH
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAHLAWTKTLT---ATSSNRSAIDPSKIVPLLSDS--THA   68 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~fpllsD~--~~~   68 (145)
                      |. |+|.|++++  ++|+.+|++|||||.|        +.+.+++|++.++   +++      +   +||+++|.  ++.
T Consensus        71 c~-e~p~L~~l~--~~~~~~g~~Vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~------~---~fpll~d~d~~g~  138 (215)
T 2i3y_A           71 TA-QYPELNALQ--EELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFV------P---SFQLFEKGDVNGE  138 (215)
T ss_dssp             GG-GHHHHHHHH--HHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHTSSCTTCC------C---SSEEBCCCCSSST
T ss_pred             hH-hHHHHHHHH--HHhccCCeEEEEEEccccCcCCCCCHHHHHHHHHhccchhccC------c---cceeEeeeccCCc
Confidence            66 999999999  6999999999999954        5678889987110   265      8   99999864  344


Q ss_pred             HH-HHhCCCc---c----CCC--------------C-cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         69 IS-KTYGCYL---S----SAG--------------H-SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        69 va-~~yg~~~---~----~~g--------------~-~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .+ ..|+...   .    ..|              + -.|++||||++|+|++.+.+..    +.+++.+.|++|.
T Consensus       139 ~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~vv~~~~g~~----~~~~l~~~I~~ll  210 (215)
T 2i3y_A          139 KEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRA----TVSSVKTDILAYL  210 (215)
T ss_dssp             TCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTS----CHHHHHHHHHHHG
T ss_pred             ccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCCeEEEEeCCCC----CHHHHHHHHHHHH
Confidence            31 1222100   0    001              0 1379999999999999987653    3567777777765

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.33  E-value=2.9e-12  Score=94.30  Aligned_cols=97  Identities=15%  Similarity=0.177  Sum_probs=74.7

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEe--cCchHHH
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLS--DSTHAIS   70 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~~~~~~~~~~~~~~~~~~~~~~~fplls--D~~~~va   70 (145)
                      .|..|++.|++++  ++|+.+|++||+||.|        +.+..++|+++  .++      +   +||+++  |.++..+
T Consensus        63 ~C~~~~p~l~~l~--~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~--~~~------~---~~p~~~~~d~~g~~~  129 (181)
T 2p31_A           63 FTDQHYRALQQLQ--RDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARR--TYS------V---SFPMFSKIAVTGTGA  129 (181)
T ss_dssp             THHHHHHHHHHHH--HHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHH--HHC------C---CSCBBCCCCCSSTTS
T ss_pred             CcHHHHHHHHHHH--HHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHh--hcC------C---CceeEeecccCCccc
Confidence            4999999999999  6899999999999986        57778888763  145      8   899996  5555543


Q ss_pred             H---HhCCCccCCCCcce-------EEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         71 K---TYGCYLSSAGHSLR-------AYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        71 ~---~yg~~~~~~g~~~p-------~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .   .|++.      ..|       ++||||++|+|++.+.+..    +.+++.+.|+++
T Consensus       130 ~~~~~~~~~------~~P~~~~~~~~~~lid~~G~i~~~~~g~~----~~~~l~~~i~~l  179 (181)
T 2p31_A          130 HPAFKYLAQ------TSGKEPTWNFWKYLVAPDGKVVGAWDPTV----SVEEVRPQITAL  179 (181)
T ss_dssp             CHHHHHHHH------HHSCCCCSTTCEEEECTTSCEEEEECTTS----CHHHHHHHHHTT
T ss_pred             hhhhhhhhh------cCCCccccceeEEEEcCCCCEEEEeCCCC----CHHHHHHHHHHH
Confidence            3   33333      246       9999999999999987653    467888888776

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.32  E-value=4.5e-11  Score=81.92  Aligned_cols=94  Identities=16%  Similarity=0.147  Sum_probs=77.5

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCC-HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDS-HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      |..+++.|.+++  ++|.  ++.+++|+.|+ .+..++|.+.   ++      ++  +||++.|.+.++++.||+.    
T Consensus        40 C~~~~~~l~~~~--~~~~--~~~~~~v~~~~~~~~~~~~~~~---~~------~~--~~~~~~d~~~~~~~~~~i~----  100 (136)
T 1zzo_A           40 CQGEAPVVGQVA--ASHP--EVTFVGVAGLDQVPAMQEFVNK---YP------VK--TFTQLADTDGSVWANFGVT----  100 (136)
T ss_dssp             HHHHHHHHHHHH--HHCT--TSEEEEEECSSCHHHHHHHHHH---TT------CT--TSEEEECTTCHHHHHTTCC----
T ss_pred             HHHHHHHHHHHH--HHcC--CeEEEEEeCCCCHHHHHHHHHH---cC------CC--ceEEEEcCCcHHHHHcCCC----
Confidence            899999999998  5776  89999999864 7778888775   54      32  7999999999999999987    


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                        ..|++||||++|+|+ .+.|..    +.+++.+.|+++-
T Consensus       101 --~~P~~~~id~~g~i~-~~~g~~----~~~~l~~~l~~~l  134 (136)
T 1zzo_A          101 --QQPAYAFVDPHGNVD-VVRGRM----SQDELTRRVTALT  134 (136)
T ss_dssp             --SSSEEEEECTTCCEE-EEESCC----CHHHHHHHHHHHC
T ss_pred             --CCceEEEECCCCCEE-EEecCC----CHHHHHHHHHHHh
Confidence              379999999999999 777653    3678888777653

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=99.30  E-value=1.9e-11  Score=92.89  Aligned_cols=104  Identities=11%  Similarity=0.031  Sum_probs=71.1

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHHHHHHHHHh---hcCCCCCCCCCCCCccEEecC--chH
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAHLAWTKTLT---ATSSNRSAIDPSKIVPLLSDS--THA   68 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~fpllsD~--~~~   68 (145)
                      | .|+|.|++++  ++|+.+|++|||||.|        +.+.+++|++.++   +++      +   +||+++|.  ++.
T Consensus        53 c-~e~p~L~~l~--~~~~~~g~~vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~------~---~fp~l~d~d~~g~  120 (207)
T 2r37_A           53 T-GQYIELNALQ--EELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFV------P---NFQLFEKGDVNGE  120 (207)
T ss_dssp             T-THHHHHHHHH--HHHGGGTEEEEEEECCCBTTCCCSCHHHHHHHHHHTSSCTTCC------C---SSEEBCCCCSSST
T ss_pred             h-HHHHHHHHHH--HHhccCCEEEEEEECcccCcCCCCCHHHHHHHHHhcchhhccC------c---cceeeeEeccCCc
Confidence            6 7999999999  6999999999999954        5678889988110   266      8   99999864  344


Q ss_pred             HH-HHhCCCcc-------CCC--------------C-cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         69 IS-KTYGCYLS-------SAG--------------H-SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        69 va-~~yg~~~~-------~~g--------------~-~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .+ ..|+....       ..|              + -.|++||||++|+|++.+.+..    +.+++.+.|+++.
T Consensus       121 ~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~i~~~~~g~~----~~~~l~~~I~~ll  192 (207)
T 2r37_A          121 KEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRT----TVSNVKMDILSYM  192 (207)
T ss_dssp             TCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSCEEEEECTTS----CHHHHHHHHHHHH
T ss_pred             ccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCCcEEEEECCCC----CHHHHHHHHHHHH
Confidence            21 12221100       001              0 1379999999999999987653    2466666666654

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.30  E-value=1.6e-12  Score=96.29  Aligned_cols=99  Identities=12%  Similarity=0.175  Sum_probs=73.5

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEe--cCchHHHH
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLS--DSTHAISK   71 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~~~~~~~~~~~~~~~~~~~~~~~fplls--D~~~~va~   71 (145)
                      |..|+|.|++++  ++|+.+|++||+||.|        +.+..++|++.  +++      +   +||+++  |.++..+.
T Consensus        61 C~~~~p~l~~l~--~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~--~~~------~---~~p~~~~~d~~~~~~~  127 (187)
T 3dwv_A           61 TKGGYETATTLY--NKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCT--KFK------A---EFPIMAKINVNGENAH  127 (187)
T ss_dssp             CTTHHHHHHHHH--HHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCB--CCC------C---SSCBBCCBCCSCC-CC
T ss_pred             cHHHHHHHHHHH--HHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHh--ccC------C---CCceeeccccCCcchh
Confidence            999999999999  6999999999999986        45666776653  135      8   899997  66665442


Q ss_pred             -Hh--------CCCccCCCC-cce---EEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         72 -TY--------GCYLSSAGH-SLR---AYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        72 -~y--------g~~~~~~g~-~~p---~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                       .|        +.+    |. ..|   ++||||++|+|++.+.+..    +.+++.+.|+++-
T Consensus       128 ~~~~~l~~~~~~~~----~~~~iP~~~~~~liD~~G~i~~~~~g~~----~~~~l~~~i~~lL  182 (187)
T 3dwv_A          128 PLYEYMKKTKPGIL----ATKAIKWNFTSFLIDRDGVPVERFSPGA----SVKDIEEKLIPLL  182 (187)
T ss_dssp             HHHHHHHHHSCCSB----SSSSCCSTTCEEEECTTSCEEEEECTTC----CHHHHHHHHHHHC
T ss_pred             HHHHHHHhhcCCcc----CCCccccceeEEEECCCCCEEEEECCCC----CHHHHHHHHHHHH
Confidence             22        332    21 367   9999999999999987653    3567777777664

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=98.96  E-value=2.4e-13  Score=97.18  Aligned_cols=100  Identities=19%  Similarity=0.139  Sum_probs=77.3

Q ss_pred             ChhHHHHHHHH-Hhhhhhhh-cCCcEEEEEeCCCH-HHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCc
Q psy17183          1 MDTKIACDVLK-LVRKEILI-VSPFQIIAVSVDSH-LAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYL   77 (145)
Q Consensus         1 ~~t~e~~~~~~-~~~~~~f~-~~gv~vi~VS~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~   77 (145)
                      .|..+++.|.+ ++  ++|+ ..++.+++|+.|+. +..++|.+.   ++      +   +||+++|.++++++.||+..
T Consensus        47 ~C~~~~~~l~~~l~--~~~~~~~~~~vv~v~~d~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~~~~  112 (159)
T 2ls5_A           47 VCRKEMPFIEKDIW--LKHKDNADFALIGIDRDEPLEKVLAFAKS---TG------V---TYPLGLDPGADIFAKYALRD  112 (159)
Confidence            38999999998 87  5787 78999999998864 456777775   65      8   99999999999999999752


Q ss_pred             cCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcccc
Q psy17183         78 SSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLV  123 (145)
Q Consensus        78 ~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~  123 (145)
                      .    ..|++||||++|+|++.+.+..     ..++.+.|++++..
T Consensus       113 ~----~~P~~~lid~~G~i~~~~~g~~-----~~~l~~~l~~l~~~  149 (159)
T 2ls5_A          113 A----GITRNVLIDREGKIVKLTRLYN-----EEEFASLVQQINEM  149 (159)
Confidence            1    3699999999999999887632     23444444444443

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.29  E-value=2e-11  Score=86.05  Aligned_cols=99  Identities=11%  Similarity=0.087  Sum_probs=79.2

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCC-HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDS-HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      |..+++.|.+++  ++|...++.+++|+.|. .+..++|.+.   ++      ++  .++++.|.++++++.||+.    
T Consensus        45 C~~~~~~l~~l~--~~~~~~~~~~v~v~~d~~~~~~~~~~~~---~~------~~--~~~~~~d~~~~~~~~~~v~----  107 (152)
T 2lja_A           45 CRGELPALKELE--EKYAGKDIHFVSLSCDKNKKAWENMVTK---DQ------LK--GIQLHMGTDRTFMDAYLIN----  107 (152)
T ss_dssp             GGGTHHHHHHHH--HHSTTSSEEEEEEECCSCHHHHHHHHHH---HT------CC--SEEEECSSCTHHHHHTTCC----
T ss_pred             HHHHhHHHHHHH--HHhccCCeEEEEEEccCcHHHHHHHHHh---cC------CC--CceeecCcchhHHHHcCcC----
Confidence            999999999998  58888899999999875 4567777765   54      51  3578899999999999987    


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcccc
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLV  123 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~  123 (145)
                        ..|++||||++|+|++...+..    +.+++.+.|+.+...
T Consensus       108 --~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~~~~~  144 (152)
T 2lja_A          108 --GIPRFILLDRDGKIISANMTRP----SDPKTAEKFNELLGL  144 (152)
T ss_dssp             --SSCCEEEECTTSCEEESSCCCT----TCHHHHHHHHHHHTC
T ss_pred             --CCCEEEEECCCCeEEEccCCCC----CHHHHHHHHHHHhcc
Confidence              3799999999999998766542    346777777776643

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.28  E-value=1e-11  Score=94.08  Aligned_cols=104  Identities=11%  Similarity=0.010  Sum_probs=71.5

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHHHHHHHHHh---hcCCCCCCCCCCCCccEEecC--chH
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAHLAWTKTLT---ATSSNRSAIDPSKIVPLLSDS--THA   68 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~fpllsD~--~~~   68 (145)
                      |..|+|.|++++  ++|+.+|++||+||.|        +.+.+++|++.++   +++      +   +||+++|.  ++.
T Consensus        62 C~~e~p~l~~l~--~~~~~~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~------~---~fp~l~d~d~~g~  130 (208)
T 2f8a_A           62 TVRDYTQMNELQ--RRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFE------P---NFMLFEKCEVNGA  130 (208)
T ss_dssp             HHHHHHHHHHHH--HHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCC------C---SSEEBCCCCCSST
T ss_pred             HHHHHHHHHHHH--HHccCCCeEEEEEECCcccccCCCCHHHHHHHHHhcccccccc------c---ceEEEEEeecCCC
Confidence            889999999999  6899999999999986        5678888887210   255      8   89999753  344


Q ss_pred             HHH--------HhCCC---------------c-cC--CCC-cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         69 ISK--------TYGCY---------------L-SS--AGH-SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        69 va~--------~yg~~---------------~-~~--~g~-~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .+.        .++..               . ..  .++ ..|++||||++|+|++.+.+..+    .+++.+.|+++
T Consensus       131 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~~G~i~~~~~g~~~----~~~l~~~I~~l  205 (208)
T 2f8a_A          131 GAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQ----TIDIEPDIEAL  205 (208)
T ss_dssp             TCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSC----GGGGHHHHHHH
T ss_pred             CccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcCCCcEEEEeCCCCC----HHHHHHHHHHH
Confidence            321        22210               0 00  011 24999999999999999887643    34556666554

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.28  E-value=4.8e-12  Score=91.90  Aligned_cols=94  Identities=15%  Similarity=0.170  Sum_probs=61.3

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeC--------CCHHHHHHHH-HHHhhcCCCCCCCCCCCCccEEecC--chH-H
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSV--------DSHLAHLAWT-KTLTATSSNRSAIDPSKIVPLLSDS--THA-I   69 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~--------D~~~~~~~~~-~~~~~~~~~~~~~~~~~~fpllsD~--~~~-v   69 (145)
                      |. +++.|++++  ++|+.+|++||+||.        |+.+..++|+ +.   ++      +   +||+++|.  ++. +
T Consensus        47 C~-~~~~l~~l~--~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~---~~------~---~~p~~~d~d~~~~~~  111 (171)
T 3cmi_A           47 TP-QYKELEALY--KRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLN---YG------V---TFPIMKKIDVNGGNE  111 (171)
T ss_dssp             HH-HHHHHHHHH--HHHGGGTEEEEEEEECSCC---------------------C------C---CSCBBCCCBSSSTTB
T ss_pred             ch-hHHHHHHHH--HHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhc---cC------C---CceEEeeccCCCccc
Confidence            88 999999999  689999999999997        4566778887 64   65      8   99999874  343 2


Q ss_pred             HH--------HhCCCccCCCCcce------EEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         70 SK--------TYGCYLSSAGHSLR------AYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        70 a~--------~yg~~~~~~g~~~p------~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      ++        .||+.      ..|      ++||||++|+|++.+.|..+    .+++.+.|+++
T Consensus       112 ~~~~~~~~~~~~~v~------~~P~i~~~~~~~lid~~G~i~~~~~g~~~----~~~l~~~i~~l  166 (171)
T 3cmi_A          112 DPVYKFLKSQKSGML------GLRGIKWNFEKFLVDKKGKVYERYSSLTK----PSSLSETIEEL  166 (171)
T ss_dssp             CHHHHHHHHHSCCSS------SCCSCCSTTCEEEECSSSCEEEEECTTSC----GGGGHHHHHHH
T ss_pred             hHHHHHHHhccCCcC------CCCcccccceEEEECCCCCEEEEeCCCCC----HHHHHHHHHHH
Confidence            22        34543      256      99999999999999887543    34555555544

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.25  E-value=7.2e-11  Score=84.88  Aligned_cols=90  Identities=14%  Similarity=0.254  Sum_probs=72.4

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeC-CCHHHHHHHHHHHhhcCCCCCCCCCCCCcc-EEecCchHHHHHhCCCccC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSV-DSHLAHLAWTKTLTATSSNRSAIDPSKIVP-LLSDSTHAISKTYGCYLSS   79 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~fp-llsD~~~~va~~yg~~~~~   79 (145)
                      |..+++.|.++++  +    ++.+++|+. ++.+..++|.+.   ++      +   +|| ++.|.++++++.||+.   
T Consensus        66 C~~~~~~l~~l~~--~----~v~vv~v~~~~~~~~~~~~~~~---~~------~---~~~~~~~d~~~~~~~~~~v~---  124 (168)
T 2b1k_A           66 CRAEHQYLNQLSA--Q----GIRVVGMNYKDDRQKAISWLKE---LG------N---PYALSLFDGDGMLGLDLGVY---  124 (168)
T ss_dssp             HHHHHHHHHHHHH--T----TCCEEEEEESCCHHHHHHHHHH---HC------C---CCSEEEEETTCHHHHHHTCC---
T ss_pred             HHHHHHHHHHHHH--C----CCEEEEEECCCChHHHHHHHHH---cC------C---CCceeeECcchHHHHHcCcc---
Confidence            8899999988873  2    899999996 467778888876   66      8   899 6899999999999997   


Q ss_pred             CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         80 AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        80 ~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                         ..|++||||++|+|++.+.|..+    .+++.+.|+.
T Consensus       125 ---~~P~~~lid~~G~i~~~~~g~~~----~~~l~~~l~~  157 (168)
T 2b1k_A          125 ---GAPETFLIDGNGIIRYRHAGDLN----PRVWEEEIKP  157 (168)
T ss_dssp             ---SSSEEEEECTTSBEEEEEESCCC----HHHHHHTTHH
T ss_pred             ---ccCEEEEECCCCeEEEEEeCCCC----HHHHHHHHHH
Confidence               37999999999999999887643    4455444443

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.24  E-value=1.1e-11  Score=90.93  Aligned_cols=105  Identities=9%  Similarity=0.072  Sum_probs=72.9

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEec--CchHH-
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSD--STHAI-   69 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD--~~~~v-   69 (145)
                      .|..|+|.|++++  ++|+.+|++||+||.|        +++..++|+++  .++      +   +||+++|  ..+.. 
T Consensus        52 ~C~~~~p~l~~l~--~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~--~~~------~---~~~~~~~~d~~~~~~  118 (180)
T 3kij_A           52 LTDRNYLGLKELH--KEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARK--NYG------V---TFPIFHKIKILGSEG  118 (180)
T ss_dssp             THHHHHHHHHHHH--HHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHH--HHC------C---CSCBBCCCCCSSTTC
T ss_pred             CcHHHHHHHHHHH--HHhccCCeEEEEEECCccccCCCCCHHHHHHHHHH--hcC------C---CCceeeeeeccCccc
Confidence            4999999999999  6999999999999964        67888888774  155      8   8999874  33322 


Q ss_pred             --HHHhCCCccCCCCcceE----EEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         70 --SKTYGCYLSSAGHSLRA----YYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        70 --a~~yg~~~~~~g~~~p~----tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                        ...|....  .| ..|.    +||||++|+|++.+.+..+...-.+++.+.|+++.
T Consensus       119 ~~~~~~~~~~--~~-~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL~~~~  173 (180)
T 3kij_A          119 EPAFRFLVDS--SK-KEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQVI  173 (180)
T ss_dssp             CHHHHHHHHH--HT-CCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHHHHHHH
T ss_pred             cHHHHHHHhc--CC-CCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence              22221110  01 2466    99999999999999887554443455555555543

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.23  E-value=1.5e-10  Score=81.63  Aligned_cols=92  Identities=12%  Similarity=0.121  Sum_probs=74.4

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC-CHHHHHHHHHHHhhcCCCCCCCCCCCCcc-EEecCchHHHHHhCCCccC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD-SHLAHLAWTKTLTATSSNRSAIDPSKIVP-LLSDSTHAISKTYGCYLSS   79 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~fp-llsD~~~~va~~yg~~~~~   79 (145)
                      |..+++.|.+++.  +   .++.+++|+.| +.+..++|.+.   ++      +   +|| ++.|....+++.||+.   
T Consensus        57 C~~~~~~l~~l~~--~---~~v~~v~v~~~~~~~~~~~~~~~---~~------~---~~~~~~~d~~~~~~~~~~v~---  116 (156)
T 1kng_A           57 CHDEAPLLTELGK--D---KRFQLVGINYKDAADNARRFLGR---YG------N---PFGRVGVDANGRASIEWGVY---  116 (156)
T ss_dssp             HHHHHHHHHHHTT--C---TTSEEEEEEESCCHHHHHHHHHH---HC------C---CCSEEEEETTSHHHHHTTCC---
T ss_pred             HHHHHHHHHHHHh--c---CCeEEEEEECCCCHHHHHHHHHH---cC------C---CCceeeeCchhHHHHhcCcC---
Confidence            8889999998873  3   45999999974 67778888876   76      8   899 9999999999999987   


Q ss_pred             CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         80 AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        80 ~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                         ..|++||||++|+|++.+.|..+    .+++.+.|+++
T Consensus       117 ---~~P~~~~id~~G~i~~~~~g~~~----~~~l~~~l~~~  150 (156)
T 1kng_A          117 ---GVPETFVVGREGTIVYKLVGPIT----PDNLRSVLLPQ  150 (156)
T ss_dssp             ---SSCEEEEECTTSBEEEEEESCCC----HHHHHHTHHHH
T ss_pred             ---ccCeEEEEcCCCCEEEEEeCCCC----HHHHHHHHHHH
Confidence               37999999999999998887643    45555555443

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.14  E-value=6.5e-11  Score=83.40  Aligned_cols=98  Identities=10%  Similarity=0.187  Sum_probs=75.8

Q ss_pred             hhHHHHHHHHHhhhhhhh-cCCcEEEEEeCC-CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEe-cCchHHHHHhCCCcc
Q psy17183          2 DTKIACDVLKLVRKEILI-VSPFQIIAVSVD-SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLS-DSTHAISKTYGCYLS   78 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~-~~gv~vi~VS~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~fplls-D~~~~va~~yg~~~~   78 (145)
                      |..+++.|.+++  ++|. ..+++|++||.| +.+..++|.++   ++   .  .   .||++. |...++++.||+.  
T Consensus        43 C~~~~p~l~~l~--~~~~~~~~~~vv~v~~d~~~~~~~~~~~~---~~---~--~---~~~~~~~d~~~~~~~~~~v~--  107 (146)
T 1o8x_A           43 ARGFTPQLIEFY--DKFHESKNFEVVFCTWDEEEDGFAGYFAK---MP---W--L---AVPFAQSEAVQKLSKHFNVE--  107 (146)
T ss_dssp             HHHHHHHHHHHH--HHHTTTTTEEEEEEECCCSHHHHHHHHTT---CS---S--E---ECCGGGHHHHHHHHHHTTCC--
T ss_pred             HHHHHHHHHHHH--HHhhhcCCeEEEEEeCCCCHHHHHHHHHH---CC---c--e---eeccchhhHHHHHHHHhCCC--
Confidence            899999999998  5887 378999999998 46667777664   43   1  3   567665 7789999999987  


Q ss_pred             CCCCcceEEEEEC-CCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCC
Q psy17183         79 SAGHSLRAYYIID-KRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTT  136 (145)
Q Consensus        79 ~~g~~~p~tfIID-~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~  136 (145)
                          ..|++|||| ++|+|++.+.+.                  ....++++|..+|++
T Consensus       108 ----~~Pt~~lid~~~G~i~~~~~~~------------------~~~~~~~~~~~~w~~  144 (146)
T 1o8x_A          108 ----SIPTLIGVDADSGDVVTTRARA------------------TLVKDPEGEQFPWKD  144 (146)
T ss_dssp             ----SSSEEEEEETTTCCEEESCHHH------------------HHTTCTTCTTTTCCC
T ss_pred             ----CCCEEEEEECCCCeEEEecchh------------------HHhhCCccccCCCCC
Confidence                379999999 999998764321                  123457889999986

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.01  E-value=4.4e-10  Score=78.48  Aligned_cols=98  Identities=12%  Similarity=0.188  Sum_probs=72.9

Q ss_pred             hhHHHHHHHHHhhhhhhh-cCCcEEEEEeCCC-HHHHHHHHHHHhhcCCCCCCCCCCCCccEEe-cCchHHHHHhCCCcc
Q psy17183          2 DTKIACDVLKLVRKEILI-VSPFQIIAVSVDS-HLAHLAWTKTLTATSSNRSAIDPSKIVPLLS-DSTHAISKTYGCYLS   78 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~-~~gv~vi~VS~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~fplls-D~~~~va~~yg~~~~   78 (145)
                      |..+++.|.+++  ++|. ..+++|++||.|. .+..++|.++   ++   .  .   .||+.. |...++++.||+.  
T Consensus        43 C~~~~~~l~~l~--~~~~~~~~~~vv~i~~d~~~~~~~~~~~~---~~---~--~---~~~~~~~~~~~~~~~~~~v~--  107 (144)
T 1o73_A           43 CRGFTPVLAEFY--EKHHVAKNFEVVLISWDENESDFHDYYGK---MP---W--L---ALPFDQRSTVSELGKTFGVE--  107 (144)
T ss_dssp             HHHHHHHHHHHH--HHHTTTTTEEEEEEECCSSHHHHHHHHTT---CS---S--E---ECCTTCHHHHHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHH--HHhccCCCEEEEEEeCCCCHHHHHHHHHh---CC---c--e---EeeccchhHHHHHHHHcCCC--
Confidence            899999999998  5887 4789999999985 5556666654   43   1  3   566555 6688999999987  


Q ss_pred             CCCCcceEEEEEC-CCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCC
Q psy17183         79 SAGHSLRAYYIID-KRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTT  136 (145)
Q Consensus        79 ~~g~~~p~tfIID-~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~  136 (145)
                          ..|++|||| ++|+|++.+...        ++          ...+++|...|.+
T Consensus       108 ----~~Pt~~lid~~~G~i~~~~~~~--------~~----------~~~~~~~~~~W~~  144 (144)
T 1o73_A          108 ----SIPTLITINADTGAIIGTQART--------RV----------IEDPDGANFPWPN  144 (144)
T ss_dssp             ----SSSEEEEEETTTCCEEESCHHH--------HH----------HHCTTCTTTTCCC
T ss_pred             ----CCCEEEEEECCCCeEEecchhh--------HH----------hhCCCccCCCCCC
Confidence                379999999 899998664221        11          2346788888863

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.00  E-value=6e-10  Score=78.05  Aligned_cols=81  Identities=9%  Similarity=0.153  Sum_probs=65.7

Q ss_pred             hhHHHHHHHHHhhhhhhhc-CCcEEEEEeCC-CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEe-cCchHHHHHhCCCcc
Q psy17183          2 DTKIACDVLKLVRKEILIV-SPFQIIAVSVD-SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLS-DSTHAISKTYGCYLS   78 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~-~gv~vi~VS~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~fplls-D~~~~va~~yg~~~~   78 (145)
                      |..+++.|.+++  ++|.. .+++|++||.| +.+..++|.++   ++   .  .   .||++. |...++++.||+.  
T Consensus        43 C~~~~~~l~~l~--~~~~~~~~~~vv~v~~d~~~~~~~~~~~~---~~---~--~---~~~~~~~d~~~~~~~~~~v~--  107 (144)
T 1i5g_A           43 SRAFTPQLIDFY--KAHAEKKNFEVMLISWDESAEDFKDYYAK---MP---W--L---ALPFEDRKGMEFLTTGFDVK--  107 (144)
T ss_dssp             HHHHHHHHHHHH--HHHTTTTTEEEEEEECCSSHHHHHHHHTT---CS---S--E---ECCTTCHHHHHHHHHHTTCC--
T ss_pred             HHHHHHHHHHHH--HHhccCCCEEEEEEeCCCCHHHHHHHHHh---CC---c--c---ccccCchHHHHHHHHHcCCC--
Confidence            899999999998  58874 78999999998 56777777764   43   1  3   567666 7789999999987  


Q ss_pred             CCCCcceEEEEEC-CCCcEEEEEe
Q psy17183         79 SAGHSLRAYYIID-KRGYLRSMNV  101 (145)
Q Consensus        79 ~~g~~~p~tfIID-~dG~I~~~~~  101 (145)
                          ..|++|||| ++|+|++.+.
T Consensus       108 ----~~P~~~lid~~~G~i~~~~~  127 (144)
T 1i5g_A          108 ----SIPTLVGVEADSGNIITTQA  127 (144)
T ss_dssp             ----SSSEEEEEETTTCCEEESCH
T ss_pred             ----CCCEEEEEECCCCcEEeccc
Confidence                379999999 9999987653

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=98.98  E-value=1.6e-08  Score=73.91  Aligned_cols=108  Identities=16%  Similarity=0.256  Sum_probs=72.3

Q ss_pred             ChhHHHHHHHHHhhhhhhhcC--CcEEEEEeCC----CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchH-H----
Q psy17183          1 MDTKIACDVLKLVRKEILIVS--PFQIIAVSVD----SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHA-I----   69 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~--gv~vi~VS~D----~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~-v----   69 (145)
                      .|..+++.+.+++  +.+++.  ++++|+||.|    +++.+++|++.   ++   ....   .|.+|.+...+ +    
T Consensus        47 ~Cp~~~~~l~~l~--~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~~---~~---~~~~---~~~~ltg~~~~~~~~~~  115 (170)
T 4hde_A           47 VCPPMTANMAKLQ--KMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQK---FT---EDTS---NWNLLTGYSLEDITKFS  115 (170)
T ss_dssp             SHHHHHHHHHHHH--HHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTT---TC---SCCT---TEEEEBCSCHHHHHHHH
T ss_pred             cccHHHHHHHHHH--HhhhcccccceeEeeecCcccccHHHHHHHHHH---cC---CCCC---CceecCcccHHHHHHHH
Confidence            3888888888877  467544  5889999975    68889999886   54   1113   56677775433 2    


Q ss_pred             HHHhCCCccC--CCC--cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         70 SKTYGCYLSS--AGH--SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        70 a~~yg~~~~~--~g~--~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      ...|+.....  .|.  -.+++||||++|+|+..+.+...  .+.+++++.|++|.
T Consensus       116 ~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~--~~~~~l~~~ik~Ll  169 (170)
T 4hde_A          116 KDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISN--TPYEDIIRDMKRLA  169 (170)
T ss_dssp             HHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSS--CCHHHHHHHHHHHH
T ss_pred             HhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCC--CCHHHHHHHHHHHh
Confidence            2334443221  121  14789999999999988876432  35788888888764

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=98.51  E-value=6.4e-11  Score=82.44  Aligned_cols=85  Identities=25%  Similarity=0.300  Sum_probs=65.5

Q ss_pred             ChhHHHHHHHHHhhhhhhh--cCCcEEEEEeCC-CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCc
Q psy17183          1 MDTKIACDVLKLVRKEILI--VSPFQIIAVSVD-SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYL   77 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~--~~gv~vi~VS~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~   77 (145)
                      .|..+++.|.+++  ++|+  ..++.+++||.| +.+..++|.+.   ++      ++-..+|+..|..+++++.||+. 
T Consensus        40 ~C~~~~~~l~~~~--~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~~~~~~~~v~-  107 (143)
T 2lus_A           40 PCRGFTPILADMY--SELVDDSAPFEIIFVSSDRSEDDMFQYMME---SH------GDWLAIPYRSGPASNVTAKYGIT-  107 (143)
Confidence            3899999999998  5784  358999999998 45566777665   54      40003556678888999999987 


Q ss_pred             cCCCCcceEEEEECCCCcEEEEEee
Q psy17183         78 SSAGHSLRAYYIIDKRGYLRSMNVS  102 (145)
Q Consensus        78 ~~~g~~~p~tfIID~dG~I~~~~~~  102 (145)
                           ..|++||||++|+|++.+..
T Consensus       108 -----~~P~~~lid~~G~i~~~~~~  127 (143)
T 2lus_A          108 -----GIPALVIVKKDGTLISMNGR  127 (143)
Confidence                 37999999999999988644

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=98.90  E-value=2.5e-09  Score=77.55  Aligned_cols=81  Identities=16%  Similarity=0.151  Sum_probs=63.8

Q ss_pred             hhHHHHHHHHHhhhhhhhc-CCcEEEEEeCCC-HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCc-hHHHHHhCCCcc
Q psy17183          2 DTKIACDVLKLVRKEILIV-SPFQIIAVSVDS-HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDST-HAISKTYGCYLS   78 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~-~gv~vi~VS~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~-~~va~~yg~~~~   78 (145)
                      |..+++.|.+++  ++|+. .++.||+|+.|. .+..++|.++   ++   .  .   .||+..+.. +++++.||+.  
T Consensus        63 C~~~~p~l~~l~--~~~~~~~~v~vv~v~~d~~~~~~~~~~~~---~~---~--~---~~~~~~~~~~~~l~~~~~v~--  127 (165)
T 3s9f_A           63 CRGFTPQLVEFY--EKHHDSKNFEIILASWDEEEDDFNAYYAK---MP---W--L---SIPFANRNIVEALTKKYSVE--  127 (165)
T ss_dssp             HHHHHHHHHHHH--HHHTTTTTEEEEEEECCCSHHHHHHHHTT---CS---S--E---ECCTTCHHHHHHHHHHTTCC--
T ss_pred             HHHHHHHHHHHH--HHhccCCCeEEEEEecCCCHHHHHHHHHh---CC---C--c---ccccCchhHHHHHHHHcCCC--
Confidence            999999999999  68876 789999999875 4556666664   43   1  3   566655544 8999999987  


Q ss_pred             CCCCcceEEEEECCC-CcEEEEEe
Q psy17183         79 SAGHSLRAYYIIDKR-GYLRSMNV  101 (145)
Q Consensus        79 ~~g~~~p~tfIID~d-G~I~~~~~  101 (145)
                          ..|++||||++ |+|++...
T Consensus       128 ----~~Pt~~lid~~~G~iv~~~~  147 (165)
T 3s9f_A          128 ----SIPTLIGLNADTGDTVTTRA  147 (165)
T ss_dssp             ----SSSEEEEEETTTCCEEESCH
T ss_pred             ----CCCEEEEEeCCCCEEEeccc
Confidence                47999999998 99987654

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=98.26  E-value=1.1e-06  Score=62.68  Aligned_cols=86  Identities=8%  Similarity=0.032  Sum_probs=63.1

Q ss_pred             hhHHHHHH---HHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCcc
Q psy17183          2 DTKIACDV---LKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLS   78 (145)
Q Consensus         2 ~t~e~~~~---~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~   78 (145)
                      |..++|.|   .++.   ++...++.++.|+.+...            +      +   +|++ .|.+.++++.|++.  
T Consensus        63 C~~~~p~l~~~~~~~---~~~~~~~~~v~vd~~~~~------------~------~---~~~~-~~~~~~l~~~~~v~--  115 (154)
T 2ju5_A           63 CIKMQDQILQSSEFK---HFAGVHLHMVEVDFPQKN------------H------Q---PEEQ-RQKNQELKAQYKVT--  115 (154)
T ss_dssp             HHHHHHHTTTSHHHH---HHHHHHCEEEEEECCSSC------------C------C---CHHH-HHHHHHHHHHTTCC--
T ss_pred             HHHHHHHHhcCHHHH---HHhcCcEEEEEecCcccc------------C------C---Chhh-HhhHHHHHHHcCCC--
Confidence            88888888   4443   233346888888776421            2      5   6664 67888999999997  


Q ss_pred             CCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         79 SAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        79 ~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                          ..|++||+|++|++++.. |..  ..+.+++++.|+++.
T Consensus       116 ----~~Pt~~~~d~~G~~~~~~-G~~--~~~~~~l~~~l~~~l  151 (154)
T 2ju5_A          116 ----GFPELVFIDAEGKQLARM-GFE--PGGGAAYVSKVKSAL  151 (154)
T ss_dssp             ----SSSEEEEECTTCCEEEEE-CCC--TTCHHHHHHHHHHHH
T ss_pred             ----CCCEEEEEcCCCCEEEEe-cCC--CCCHHHHHHHHHHHH
Confidence                379999999999999988 764  235788888887654

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=98.10  E-value=2.8e-05  Score=52.83  Aligned_cols=51  Identities=10%  Similarity=0.154  Sum_probs=38.9

Q ss_pred             cCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccc
Q psy17183         64 DSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVD  124 (145)
Q Consensus        64 D~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~  124 (145)
                      |.+.++++.||+.      ..|+++++|++|++++.+.|..    +.+++.+.|+.+....
T Consensus        69 d~~~~~~~~~~v~------~~Pt~~~~~~~G~~~~~~~G~~----~~~~l~~~l~~~~~~~  119 (126)
T 2l57_A           69 EKNIDLAYKYDAN------IVPTTVFLDKEGNKFYVHQGLM----RKNNIETILNSLGVKE  119 (126)
T ss_dssp             SHHHHHHHHTTCC------SSSEEEEECTTCCEEEEEESCC----CHHHHHHHHHHHCCCC
T ss_pred             CchHHHHHHcCCc------ceeEEEEECCCCCEEEEecCCC----CHHHHHHHHHHHhccc
Confidence            3445677888877      3799999999999999887753    4678888888776443

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=97.71  E-value=5.7e-05  Score=52.23  Aligned_cols=51  Identities=12%  Similarity=0.082  Sum_probs=37.8

Q ss_pred             cCchHHHHHhCCCccCCCCcceEEEEECCCCcEE--EEEeecCCCCCCHHHHHHHHHhccccc
Q psy17183         64 DSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLR--SMNVSDIQVGRNLKEILRQVEAFQLVD  124 (145)
Q Consensus        64 D~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~--~~~~~~~~~~~~~~ell~~i~~l~~~~  124 (145)
                      |...++++.||+.      ..|+++++|++|+++  +.+.|..    +.+++.+.|+.++..-
T Consensus        78 ~~~~~l~~~~~v~------~~Pt~~~~d~~G~~v~~~~~~G~~----~~~~l~~~l~~~~~~~  130 (134)
T 2fwh_A           78 AQDVALLKHLNVL------GLPTILFFDGQGQEHPQARVTGFM----DAETFSAHLRDRQPHH  130 (134)
T ss_dssp             HHHHHHHHHTTCC------SSSEEEEECTTSCBCGGGCBCSCC----CHHHHHHHHHHC----
T ss_pred             chHHHHHHHcCCC------CCCEEEEECCCCCEeeeeeeeecc----CHHHHHHHHHhcCccc
Confidence            4467789999987      379999999999997  5666653    4788999998887543

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=97.29  E-value=0.0024  Score=42.23  Aligned_cols=47  Identities=17%  Similarity=0.254  Sum_probs=36.6

Q ss_pred             cCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         64 DSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        64 D~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      |.+.++++.||+.      ..|+++++ ++|+++..+.|..    +.+++.+.++.+.
T Consensus        58 ~~~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~~  104 (112)
T 2voc_A           58 DENQETAGKYGVM------SIPTLLVL-KDGEVVETSVGFK----PKEALQELVNKHL  104 (112)
T ss_dssp             TTCCSHHHHTTCC------SBSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHTTS
T ss_pred             CCCHHHHHHcCCC------cccEEEEE-eCCEEEEEEeCCC----CHHHHHHHHHHHH
Confidence            4455678889987      37999999 9999998888764    4678888887655

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=97.27  E-value=0.00064  Score=46.31  Aligned_cols=52  Identities=15%  Similarity=0.185  Sum_probs=39.5

Q ss_pred             cCchHHHHHhCC---CccCCCCcceEEEEECCCCcEEEEEeecC-CC--CCCHHHHHHHHHhcc
Q psy17183         64 DSTHAISKTYGC---YLSSAGHSLRAYYIIDKRGYLRSMNVSDI-QV--GRNLKEILRQVEAFQ  121 (145)
Q Consensus        64 D~~~~va~~yg~---~~~~~g~~~p~tfIID~dG~I~~~~~~~~-~~--~~~~~ell~~i~~l~  121 (145)
                      |...++++.||+   .      ..|+++++|++|++++...|.. ..  ....+++.+.|+.+.
T Consensus        75 ~~~~~l~~~~~v~~~~------~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A           75 DRNLELSQAYGDPIQD------GIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             TSSHHHHHHTTCGGGG------CSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             cchHHHHHHhCCccCC------ccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence            667889999998   5      4799999999999999987732 11  235677777777654

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=97.15  E-value=0.001  Score=44.90  Aligned_cols=48  Identities=19%  Similarity=0.209  Sum_probs=38.9

Q ss_pred             CchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccc
Q psy17183         65 STHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQL  122 (145)
Q Consensus        65 ~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~  122 (145)
                      ....+++.||+.      ..|+++++|++|++++...|..    +.+++.+.|+++..
T Consensus        74 ~~~~~~~~~~v~------~~Pt~~~~d~~G~~~~~~~G~~----~~~~l~~~l~~~~~  121 (130)
T 2kuc_A           74 EGVELRKKYGVH------AYPTLLFINSSGEVVYRLVGAE----DAPELLKKVKLGVE  121 (130)
T ss_dssp             THHHHHHHTTCC------SSCEEEEECTTSCEEEEEESCC----CHHHHHHHHHHHHS
T ss_pred             chHHHHHHcCCC------CCCEEEEECCCCcEEEEecCCC----CHHHHHHHHHHHHH
Confidence            467899999987      3799999999999998887763    46788888877653

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=97.13  E-value=0.0064  Score=39.08  Aligned_cols=47  Identities=15%  Similarity=0.242  Sum_probs=37.3

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|.+.++++.|++.      ..|+.+++ ++|+++..+.|..    +.+++.+.|+++
T Consensus        60 ~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~  106 (107)
T 2i4a_A           60 IDDNPETPNAYQVR------SIPTLMLV-RDGKVIDKKVGAL----PKSQLKAWVESA  106 (107)
T ss_dssp             TTTCCHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHT
T ss_pred             CCCCHHHHHhcCCC------ccCEEEEE-eCCEEEEEecCCC----CHHHHHHHHHhc
Confidence            46678899999987      37999999 9999998877753    467888877764

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=97.09  E-value=0.0048  Score=42.28  Aligned_cols=48  Identities=13%  Similarity=0.268  Sum_probs=36.4

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|.+.++++.|++.      ..|+++++|++|+++ .+.|.    .+.+++.+.|+++.
T Consensus        78 ~~~~~~l~~~~~v~------~~Pt~~~~~~~G~~~-~~~G~----~~~~~l~~~l~~~~  125 (136)
T 2l5l_A           78 TEKEQELAGAFGIR------SIPSILFIPMEGKPE-MAQGA----MPKASFKKAIDEFL  125 (136)
T ss_dssp             TTTCHHHHHHTTCC------SSCEEEEECSSSCCE-EEESC----CCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHcCCC------CCCEEEEECCCCcEE-EEeCC----CCHHHHHHHHHHHh
Confidence            45677889999987      379999999999987 45554    34677777776654

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=97.08  E-value=0.0053  Score=41.93  Aligned_cols=50  Identities=10%  Similarity=0.277  Sum_probs=37.3

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      +-.|.+.++++.||+.      ..|+++++|++|+++ .+.|.    .+.+++.+.|+.+-
T Consensus        89 v~~~~~~~~~~~~~v~------~~Pt~~~~~~~g~~~-~~~G~----~~~~~l~~~l~~~l  138 (141)
T 3hxs_A           89 VNVDKEPELARDFGIQ------SIPTIWFVPMKGEPQ-VNMGA----LSKEQLKGYIDKVL  138 (141)
T ss_dssp             EETTTCHHHHHHTTCC------SSSEEEEECSSSCCE-EEESC----CCHHHHHHHHHHTT
T ss_pred             EECCCCHHHHHHcCCC------CcCEEEEEeCCCCEE-EEeCC----CCHHHHHHHHHHHH
Confidence            3345567788889987      379999999999987 55554    34678888887653

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=97.08  E-value=0.0064  Score=39.63  Aligned_cols=48  Identities=15%  Similarity=0.170  Sum_probs=37.6

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|.+.++++.|++.      ..|+++++ ++|+++..+.|..    +.+++.+.|+++.
T Consensus        65 ~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~g~~----~~~~l~~~l~~~l  112 (115)
T 1thx_A           65 IDPNPTTVKKYKVE------GVPALRLV-KGEQILDSTEGVI----SKDKLLSFLDTHL  112 (115)
T ss_dssp             STTCHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHcCCC------ceeEEEEE-cCCEEEEEecCCC----CHHHHHHHHHHHh
Confidence            46677889999987      37999999 9999998877753    4677777776653

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=97.08  E-value=0.0055  Score=39.45  Aligned_cols=47  Identities=13%  Similarity=0.170  Sum_probs=36.8

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|.+.++++.||+.      ..|+++++ ++|+++..+.|..    +.+++.+.|+++
T Consensus        57 ~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~  103 (105)
T 1nsw_A           57 VDENPETTSQFGIM------SIPTLILF-KGGRPVKQLIGYQ----PKEQLEAQLADV  103 (105)
T ss_dssp             TTTCHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHTTTT
T ss_pred             CcCCHHHHHHcCCc------cccEEEEE-eCCeEEEEEecCC----CHHHHHHHHHHH
Confidence            46678889999987      37999999 9999998887763    357777777654

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=97.07  E-value=0.0063  Score=39.81  Aligned_cols=44  Identities=14%  Similarity=0.219  Sum_probs=33.8

Q ss_pred             CchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         65 STHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        65 ~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .+.++++.|++.      ..|+ |+++++|+++..+.|.     +.+++.+.|+++
T Consensus        66 ~~~~~~~~~~v~------~~Pt-~~~~~~G~~~~~~~G~-----~~~~l~~~l~~~  109 (111)
T 2pu9_C           66 ENKTLAKELGIR------VVPT-FKILKENSVVGEVTGA-----KYDKLLEAIQAA  109 (111)
T ss_dssp             TTHHHHHHHCCS------BSSE-EEEESSSSEEEEEESS-----CHHHHHHHHHHH
T ss_pred             chHHHHHHcCCC------eeeE-EEEEeCCcEEEEEcCC-----CHHHHHHHHHHh
Confidence            567889999987      3687 7788999999887765     256777777654

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=97.04  E-value=0.0012  Score=45.58  Aligned_cols=81  Identities=7%  Similarity=-0.043  Sum_probs=50.8

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG   81 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g   81 (145)
                      |..++|.|.++.  ++|.   +.++.|+.++.... ..                       .|...++++.||+.     
T Consensus        46 C~~~~p~l~~l~--~~~~---v~~~~vd~~~~~~~-~~-----------------------~d~~~~l~~~~~v~-----   91 (135)
T 3emx_A           46 CHRDWPQLIQAS--KEVD---VPIVMFIWGSLIGE-RE-----------------------LSAARLEMNKAGVE-----   91 (135)
T ss_dssp             HHHHHHHHHHHH--TTCC---SCEEEEEECTTCCH-HH-----------------------HHHHHHHHHHHTCC-----
T ss_pred             hhHhChhHHHHH--HHCC---CEEEEEECCCchhh-hh-----------------------hhhhHHHHHHcCCc-----
Confidence            677777777776  3443   67777766432111 00                       13446778899987     


Q ss_pred             CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccc
Q psy17183         82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQL  122 (145)
Q Consensus        82 ~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~  122 (145)
                       ..|+.+++ ++|+++..+.|..+    .+.+.+.++++..
T Consensus        92 -~~Pt~~~~-~~G~~v~~~~G~~~----~~~~~~~i~~~~~  126 (135)
T 3emx_A           92 -GTPTLVFY-KEGRIVDKLVGATP----WSLKVEKAREIYG  126 (135)
T ss_dssp             -SSSEEEEE-ETTEEEEEEESCCC----HHHHHHHHHHHC-
T ss_pred             -eeCeEEEE-cCCEEEEEEeCCCC----HHHHHHHHHHHhC
Confidence             37955555 59999999888743    4555566666653

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=96.97  E-value=0.0005  Score=49.07  Aligned_cols=51  Identities=12%  Similarity=0.188  Sum_probs=35.7

Q ss_pred             EEecCchHH-HHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         61 LLSDSTHAI-SKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        61 llsD~~~~v-a~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .+.|..+.+ ++.|++.      ..|+++|||++|++++...|..+   +.+++++.|++.
T Consensus       113 ~~~~~~~~~~~~~~~v~------~~Pt~~lid~~G~~~~~~~G~~~---~~~~l~~~l~~~  164 (172)
T 3f9u_A          113 TVGDKWSYLQRVKFGAN------AQPFYVLIDNEGNPLNKSYAYDE---DISKYINFLQTG  164 (172)
T ss_dssp             EHHHHHHHHHHHHHSCC------CSSEEEEECTTSCBSSCCBCSCC---CHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHcCCC------CcceEEEECCCCCEEeeccCCCC---CHHHHHHHHHHH
Confidence            344444444 5889988      37999999999999988777642   256666655543

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=96.96  E-value=0.013  Score=37.75  Aligned_cols=47  Identities=19%  Similarity=0.364  Sum_probs=36.1

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|.+.++++.||+.      ..|+++++ ++|+++..+.|..    +.+++.+.|+++
T Consensus        59 ~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~  105 (107)
T 1dby_A           59 TDESPNVASEYGIR------SIPTIMVF-KGGKKCETIIGAV----PKATIVQTVEKY  105 (107)
T ss_dssp             TTTCHHHHHHHTCC------SSCEEEEE-SSSSEEEEEESCC----CHHHHHHHHHHH
T ss_pred             CCCCHHHHHHCCCC------cCCEEEEE-eCCEEEEEEeCCC----CHHHHHHHHHHH
Confidence            46678899999987      36987776 8999998888764    356777777654

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=96.88  E-value=0.011  Score=38.17  Aligned_cols=47  Identities=15%  Similarity=0.279  Sum_probs=36.6

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|.+.++++.||+.      ..|+.+++ ++|+++..+.|..    +.+++.+.|+++
T Consensus        60 ~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~  106 (108)
T 2trx_A           60 IDQNPGTAPKYGIR------GIPTLLLF-KNGEVAATKVGAL----SKGQLKEFLDAN  106 (108)
T ss_dssp             TTTCTTHHHHTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred             CCCCHHHHHHcCCc------ccCEEEEE-eCCEEEEEEecCC----CHHHHHHHHHHh
Confidence            45677889999987      37999999 8999998877763    467777777654

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=96.87  E-value=0.011  Score=39.37  Aligned_cols=47  Identities=11%  Similarity=0.119  Sum_probs=36.7

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|.+.++++.|++.      ..|+.+++ ++|+++..+.|..    +.+++.+.|+++
T Consensus        71 ~d~~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~  117 (119)
T 1w4v_A           71 IDDHTDLAIEYEVS------AVPTVLAM-KNGDVVDKFVGIK----DEDQLEAFLKKL  117 (119)
T ss_dssp             TTTTHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred             CCCCHHHHHHcCCC------cccEEEEE-eCCcEEEEEcCCC----CHHHHHHHHHHH
Confidence            56678899999988      37999999 8999988777653    467777777654

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=96.82  E-value=0.018  Score=36.76  Aligned_cols=47  Identities=13%  Similarity=0.174  Sum_probs=36.1

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|.+.++++.|++.      ..|+.+++ ++|+++....|.    .+.+++.+.|+++
T Consensus        59 ~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~g~----~~~~~l~~~l~~~  105 (106)
T 3die_A           59 VDENPSTAAKYEVM------SIPTLIVF-KDGQPVDKVVGF----QPKENLAEVLDKH  105 (106)
T ss_dssp             TTTCHHHHHHTTCC------SBSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHTT
T ss_pred             CCcCHHHHHhCCCc------ccCEEEEE-eCCeEEEEEeCC----CCHHHHHHHHHHh
Confidence            45677888999987      37998888 599999887775    3467888887654

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=96.77  E-value=0.016  Score=36.67  Aligned_cols=49  Identities=24%  Similarity=0.304  Sum_probs=37.3

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +=.|.+.++++.|++.      ..|+.+++ ++|+++..+.|..    +.+++.+.|+++
T Consensus        53 v~~~~~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~~  101 (104)
T 2e0q_A           53 LNSDENPDIAARYGVM------SLPTVIFF-KDGEPVDEIIGAV----PREEIEIRIKNL  101 (104)
T ss_dssp             EETTTCHHHHHHTTCC------SSCEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred             EECCCCHHHHHhCCcc------ccCEEEEE-ECCeEhhhccCCC----CHHHHHHHHHHH
Confidence            3346778899999987      37999999 8999998877753    467777777654

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=96.76  E-value=0.0067  Score=41.38  Aligned_cols=47  Identities=15%  Similarity=0.279  Sum_probs=36.1

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|.+.++++.|++.      ..|+++++ ++|+++..+.|..    +.+++.+.|+++
T Consensus        80 ~~~~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~  126 (128)
T 2o8v_B           80 IDQNPGTAPKYGIR------GIPTLLLF-KNGEVAATKVGAL----SKGQLKEFLDAN  126 (128)
T ss_dssp             TTTCCTTSGGGTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred             CCCCHHHHHHcCCC------ccCEEEEE-eCCEEEEEEcCCC----CHHHHHHHHHHh
Confidence            45566788889987      37999999 9999998887763    467777777654

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=96.76  E-value=0.015  Score=37.90  Aligned_cols=47  Identities=21%  Similarity=0.334  Sum_probs=35.3

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|.+.++++.||+.      ..|+.+++ ++|+++..+.|..    +.+++.+.|+++
T Consensus        63 ~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~  109 (112)
T 1t00_A           63 IDENPGTAAKYGVM------SIPTLNVY-QGGEVAKTIVGAK----PKAAIVRDLEDF  109 (112)
T ss_dssp             TTTCHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHTHHH
T ss_pred             cCCCHHHHHhCCCC------cccEEEEE-eCCEEEEEEeCCC----CHHHHHHHHHHH
Confidence            46678899999987      36886666 8999998887763    357777777654

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=96.74  E-value=0.0062  Score=41.18  Aligned_cols=46  Identities=9%  Similarity=0.192  Sum_probs=35.0

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      .|...++++.|++.      ..|+++++ ++|+++..+.|.    .+.+++.+.|++
T Consensus        82 ~d~~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~  127 (128)
T 3ul3_B           82 LDKNESLARKFSVK------SLPTIILL-KNKTMLARKDHF----VSSNDLIALIKK  127 (128)
T ss_dssp             GGGCHHHHHHTTCC------SSSEEEEE-ETTEEEEEESSC----CCHHHHHHHHTT
T ss_pred             CCCCHHHHHHcCCC------CcCEEEEE-ECCEEEEEecCC----CCHHHHHHHHHh
Confidence            44556778889887      37999999 799998887765    346788887754

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=96.74  E-value=0.013  Score=39.01  Aligned_cols=45  Identities=13%  Similarity=0.204  Sum_probs=33.9

Q ss_pred             CchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         65 STHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        65 ~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .+.++++.||+.      ..|+ |+++++|+++..+.|..     .+++.+.|+++.
T Consensus        79 ~~~~~~~~~~v~------~~Pt-~~~~~~G~~~~~~~G~~-----~~~l~~~i~~~~  123 (124)
T 1faa_A           79 ENKTLAKELGIR------VVPT-FKILKENSVVGEVTGAK-----YDKLLEAIQAAR  123 (124)
T ss_dssp             TTHHHHHHHCCS------SSSE-EEEEETTEEEEEEESSC-----HHHHHHHHHHHT
T ss_pred             chHHHHHHcCCC------eeeE-EEEEeCCcEEEEEcCCC-----HHHHHHHHHHhh
Confidence            467889999987      3687 66679999998877652     577777777653

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=96.72  E-value=0.022  Score=36.40  Aligned_cols=48  Identities=15%  Similarity=0.160  Sum_probs=38.3

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|.+.++++.|++.      ..|+.+++ ++|+++..+.|..    +.+++.+.|+++.
T Consensus        58 ~~~~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~~l  105 (109)
T 2yzu_A           58 VDENPKTAMRYRVM------SIPTVILF-KDGQPVEVLVGAQ----PKRNYQAKIEKHL  105 (109)
T ss_dssp             TTTCHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHTTC
T ss_pred             CCCCHhHHHhCCCC------cCCEEEEE-eCCcEeeeEeCCC----CHHHHHHHHHHHh
Confidence            46678899999987      37999999 9999998877753    4678888887764

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=96.68  E-value=0.02  Score=38.03  Aligned_cols=48  Identities=10%  Similarity=0.168  Sum_probs=36.5

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +=.|...++++.||+.      ..|+.+++ ++|+++..+.|.     +.+++.+.|+++
T Consensus        68 vd~d~~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~  115 (116)
T 3qfa_C           68 VDVDDCQDVASECEVK------SMPTFQFF-KKGQKVGEFSGA-----NKEKLEATINEL  115 (116)
T ss_dssp             EETTTTHHHHHHTTCC------SSSEEEEE-SSSSEEEEEESC-----CHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHcCCc------cccEEEEE-eCCeEEEEEcCC-----CHHHHHHHHHHh
Confidence            3356788899999987      37998888 899998887765     367777777653

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=96.62  E-value=0.0094  Score=39.88  Aligned_cols=51  Identities=20%  Similarity=0.251  Sum_probs=38.1

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECC---CCcEEEEEeecCCCCCCHHHHHHHHHhccccc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDK---RGYLRSMNVSDIQVGRNLKEILRQVEAFQLVD  124 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~---dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~  124 (145)
                      .|...++++.|++.      ..|++++++.   +|+++....|..     .+++.+.++......
T Consensus        62 ~~~~~~~~~~~~i~------~~Pt~~~~~~~~~~G~~~~~~~G~~-----~~~l~~~~~~~~~~~  115 (118)
T 2f51_A           62 VDKNGNAADAYGVS------SIPALFFVKKEGNEIKTLDQFVGAD-----VSRIKADIEKFKHHH  115 (118)
T ss_dssp             TTTCHHHHHHTTCC------SSSEEEEEEEETTEEEEEEEEESCC-----HHHHHHHHHHHC---
T ss_pred             CCCCHHHHHhcCCC------CCCEEEEEeCCCCcceEEEeecCCC-----HHHHHHHHHHhhhcc
Confidence            56678899999987      3799999976   499998888764     467778887776543

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=96.62  E-value=0.02  Score=40.38  Aligned_cols=48  Identities=10%  Similarity=0.115  Sum_probs=36.9

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|.+.++++.|++.      ..|+.+++ ++|+++..+.|..    +.+++.+.|+++.
T Consensus       104 ~~~~~~l~~~~~i~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~l  151 (155)
T 2ppt_A          104 TQAHPAVAGRHRIQ------GIPAFILF-HKGRELARAAGAR----PASELVGFVRGKL  151 (155)
T ss_dssp             TTTSTHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHHH
T ss_pred             CCccHHHHHHcCCC------cCCEEEEE-eCCeEEEEecCCC----CHHHHHHHHHHHh
Confidence            45567889999987      47999998 8999998877753    4677777776643

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.61  E-value=0.015  Score=38.87  Aligned_cols=48  Identities=15%  Similarity=0.168  Sum_probs=35.0

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQL  122 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~  122 (145)
                      .|.+.++++.|++.      ..|+++++ ++|++ ..+.|.    .+.+++.+.|+++..
T Consensus        63 ~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~-~~~~G~----~~~~~l~~~l~~~~~  110 (126)
T 1x5e_A           63 VTEQPGLSGRFIIN------ALPTIYHC-KDGEF-RRYQGP----RTKKDFINFISDKEW  110 (126)
T ss_dssp             TTTCHHHHHHTTCC------SSSEEEEE-ETTEE-EECCSC----CCHHHHHHHHHTCGG
T ss_pred             CcCCHHHHHHcCCc------ccCEEEEE-eCCeE-EEeecC----CCHHHHHHHHHHHhh
Confidence            34566778889887      37999999 89986 344443    457889998887764

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=96.59  E-value=0.027  Score=36.04  Aligned_cols=49  Identities=18%  Similarity=0.297  Sum_probs=38.6

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +=.|...++++.|++.      ..|+++++ ++|+++..+.|..    +.+++.+.|+++
T Consensus        59 v~~~~~~~~~~~~~i~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~~  107 (109)
T 3tco_A           59 LNVDENQKIADKYSVL------NIPTTLIF-VNGQLVDSLVGAV----DEDTLESTVNKY  107 (109)
T ss_dssp             EETTTCHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred             EccccCHHHHHhcCcc------cCCEEEEE-cCCcEEEeeeccC----CHHHHHHHHHHH
Confidence            3356788899999987      37999999 9999998887763    467788877664

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=96.59  E-value=0.026  Score=36.54  Aligned_cols=46  Identities=15%  Similarity=0.211  Sum_probs=34.0

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|...++++.|++.      ..|+.+++ ++|+++..+.|.     +.+++.+.|+++
T Consensus        64 ~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~  109 (112)
T 1ep7_A           64 VDAVAAVAEAAGIT------AMPTFHVY-KDGVKADDLVGA-----SQDKLKALVAKH  109 (112)
T ss_dssp             TTTTHHHHHHHTCC------BSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHH
T ss_pred             CCchHHHHHHcCCC------cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHHH
Confidence            46678899999987      36885555 899999887764     356777777654

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=96.58  E-value=0.018  Score=39.19  Aligned_cols=49  Identities=12%  Similarity=0.230  Sum_probs=35.9

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      +=.|...++++.||+.      ..|+++++ ++|+++..+.|. .    .+++.+.|+++.
T Consensus        83 v~~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-~----~~~l~~~l~~~~  131 (139)
T 3d22_A           83 IDVDELSDFSASWEIK------ATPTFFFL-RDGQQVDKLVGA-N----KPELHKKITAIL  131 (139)
T ss_dssp             EETTTSHHHHHHTTCC------EESEEEEE-ETTEEEEEEESC-C----HHHHHHHHHHHH
T ss_pred             EeCcccHHHHHHcCCC------cccEEEEE-cCCeEEEEEeCC-C----HHHHHHHHHHHh
Confidence            3356788899999987      37987777 999999888775 2    456666665543

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=96.58  E-value=0.017  Score=37.39  Aligned_cols=49  Identities=16%  Similarity=0.264  Sum_probs=30.3

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +=.|.+.++++.|++.      ..|+++++ ++|+++....|..    +.+++.+.|+++
T Consensus        55 vd~~~~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~g~~----~~~~l~~~l~~~  103 (105)
T 4euy_A           55 ILLQDMQEIAGRYAVF------TGPTVLLF-YNGKEILRESRFI----SLENLERTIQLF  103 (105)
T ss_dssp             EEECCC---------C------CCCEEEEE-ETTEEEEEEESSC----CHHHHHHHHHTT
T ss_pred             EECCCCHHHHHhcCCC------CCCEEEEE-eCCeEEEEEeCCc----CHHHHHHHHHHh
Confidence            3356677888899987      47999999 5999998887763    478888888765

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=96.56  E-value=0.016  Score=37.81  Aligned_cols=46  Identities=20%  Similarity=0.241  Sum_probs=33.8

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|...++++.||+.      ..|+++++ ++|+++..+.|..     .+++.+.|+++
T Consensus        62 ~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~-----~~~l~~~l~~~  107 (112)
T 3d6i_A           62 ADENSEISELFEIS------AVPYFIII-HKGTILKELSGAD-----PKEYVSLLEDC  107 (112)
T ss_dssp             TTTCHHHHHHTTCC------SSSEEEEE-ETTEEEEEECSCC-----HHHHHHHHHHH
T ss_pred             cccCHHHHHHcCCC------cccEEEEE-ECCEEEEEecCCC-----HHHHHHHHHHH
Confidence            45677889999987      37998887 7999998877653     34566666554

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=96.56  E-value=0.02  Score=38.59  Aligned_cols=48  Identities=10%  Similarity=0.269  Sum_probs=35.4

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +=.|...++++.|++.      ..|+.+++ ++|+++..+.|.     +.+++.+.|+++
T Consensus        75 vd~d~~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~  122 (124)
T 1xfl_A           75 VDTDELKSVASDWAIQ------AMPTFMFL-KEGKILDKVVGA-----KKDELQSTIAKH  122 (124)
T ss_dssp             EETTTSHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHH
T ss_pred             EECccCHHHHHHcCCC------ccCEEEEE-ECCEEEEEEeCC-----CHHHHHHHHHHh
Confidence            3356678899999987      36886666 899999887763     356777777654

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=96.55  E-value=0.012  Score=39.36  Aligned_cols=46  Identities=13%  Similarity=0.231  Sum_probs=34.8

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|...++++.|++.      ..|+.+++ ++|+++....|.     +.+++.+.|+++
T Consensus        74 ~d~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~  119 (121)
T 2j23_A           74 VDEQSQIAQEVGIR------AMPTFVFF-KNGQKIDTVVGA-----DPSKLQAAITQH  119 (121)
T ss_dssp             TTTCHHHHHHHTCC------SSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred             CcCCHHHHHHcCCC------cccEEEEE-ECCeEEeeEcCC-----CHHHHHHHHHHh
Confidence            45677889999987      36988877 699998887765     357777777654

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=96.53  E-value=0.0026  Score=44.95  Aligned_cols=48  Identities=17%  Similarity=0.219  Sum_probs=34.5

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|...++++.||+.      ..|+++++ ++|+++..+.|..    +.+++.+.|+++.
T Consensus        77 ~d~~~~la~~~~V~------~iPT~~~f-k~G~~v~~~~G~~----~~~~l~~~i~~~l  124 (142)
T 2es7_A           77 LEQSEAIGDRFNVR------RFPATLVF-TDGKLRGALSGIH----PWAELLTLMRSIV  124 (142)
T ss_dssp             HHHHHHHHHTTTCC------SSSEEEEE-SCC----CEESCC----CHHHHHHHHHHHH
T ss_pred             CCCCHHHHHhcCCC------cCCeEEEE-eCCEEEEEEeCCC----CHHHHHHHHHHHh
Confidence            56678899999988      47999999 9999998887763    4577777776654

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=96.51  E-value=0.013  Score=40.24  Aligned_cols=66  Identities=12%  Similarity=0.067  Sum_probs=41.4

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccC--CcccCCCCCCCCC
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDST--DTQCPVNWTTGQP  139 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~--~~~~p~~w~~~~~  139 (145)
                      .|...++++.|++.      ..|+.+++ ++|+++..+.|..    +.+++.+.|+++......  ....|++|.-+.+
T Consensus        64 ~~~~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~  131 (140)
T 3hz4_A           64 IATNPWTAEKYGVQ------GTPTFKFF-CHGRPVWEQVGQI----YPSILKNAVRDMLQHGEECIRKSTPVGQDITGY  131 (140)
T ss_dssp             TTTCHHHHHHHTCC------EESEEEEE-ETTEEEEEEESSC----CHHHHHHHHHHHHHHHHHHHHTSBC--------
T ss_pred             CCcCHhHHHHCCCC------cCCEEEEE-eCCcEEEEEcCCC----CHHHHHHHHHHHhcccccCcccccccCccceee
Confidence            56788899999987      37977777 8999988887763    467777777666532211  3568888875544

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.48  E-value=0.024  Score=37.93  Aligned_cols=48  Identities=15%  Similarity=0.196  Sum_probs=36.5

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|.+.++++.|++.      ..|+++++++ |+++..+.|.    ++.+++.+.|+++.
T Consensus        69 ~~~~~~l~~~~~v~------~~Pt~~~~~~-g~~~~~~~G~----~~~~~l~~~l~~~~  116 (133)
T 1x5d_A           69 ATVNQVLASRYGIR------GFPTIKIFQK-GESPVDYDGG----RTRSDIVSRALDLF  116 (133)
T ss_dssp             TTTCCHHHHHHTCC------SSSEEEEEET-TEEEEEECSC----CSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHhCCCC------eeCeEEEEeC-CCceEEecCC----CCHHHHHHHHHHHh
Confidence            45677899999987      3799999987 8887777665    34677877776654

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=96.37  E-value=0.049  Score=34.61  Aligned_cols=49  Identities=16%  Similarity=0.297  Sum_probs=36.4

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +-.|.+.++++.|++.      ..|+.+++ ++|+++..+.|..    +.+++.+.|+++
T Consensus        56 v~~~~~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G~~----~~~~l~~~l~~~  104 (105)
T 1fb6_A           56 LNTDEAPGIATQYNIR------SIPTVLFF-KNGERKESIIGAV----PKSTLTDSIEKY  104 (105)
T ss_dssp             EETTTCHHHHHHTTCC------SSSEEEEE-ETTEEEEEEEECC----CHHHHHHHHHHH
T ss_pred             EcCcchHHHHHhCCCC------cccEEEEE-eCCeEEEEEecCC----CHHHHHHHHHhh
Confidence            3356678899999987      36986666 8999998888764    356777777653

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=96.26  E-value=0.037  Score=36.22  Aligned_cols=48  Identities=15%  Similarity=0.129  Sum_probs=37.0

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +-.|...++++.|++.      ..|+.++++ +|+++....|.     +.+++.+.|+++
T Consensus        61 vd~~~~~~l~~~~~v~------~~Pt~~~~~-~G~~~~~~~G~-----~~~~l~~~i~~~  108 (109)
T 3f3q_A           61 LDVDELGDVAQKNEVS------AMPTLLLFK-NGKEVAKVVGA-----NPAAIKQAIAAN  108 (109)
T ss_dssp             EETTTCHHHHHHTTCC------SSSEEEEEE-TTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHcCCC------ccCEEEEEE-CCEEEEEEeCC-----CHHHHHHHHHhh
Confidence            4466788999999988      379999997 99999888776     246777777654

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=96.26  E-value=0.041  Score=36.49  Aligned_cols=45  Identities=13%  Similarity=0.183  Sum_probs=34.1

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      .|.+.++++.|++.      ..|+.+++ ++|+++....|..     .+++.+.|++
T Consensus        69 ~~~~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~-----~~~l~~~l~~  113 (114)
T 2oe3_A           69 VDESPDIAKECEVT------AMPTFVLG-KDGQLIGKIIGAN-----PTALEKGIKD  113 (114)
T ss_dssp             TTTCHHHHHHTTCC------SBSEEEEE-ETTEEEEEEESSC-----HHHHHHHHHT
T ss_pred             CCCCHHHHHHCCCC------cccEEEEE-eCCeEEEEEeCCC-----HHHHHHHHHh
Confidence            56677899999987      36887665 9999998877752     5677777764

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=96.25  E-value=0.039  Score=37.96  Aligned_cols=48  Identities=10%  Similarity=0.142  Sum_probs=36.5

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|.+.++++.|++.      ..|+++++ ++|+++..+.|..    +.+++.+.|+++-
T Consensus        95 ~~~~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~l  142 (148)
T 3p2a_A           95 TEAEPALSTRFRIR------SIPTIMLY-RNGKMIDMLNGAV----PKAPFDNWLDEQL  142 (148)
T ss_dssp             TTTCHHHHHHTTCC------SSSEEEEE-ETTEEEEEESSCC----CHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHCCCC------ccCEEEEE-ECCeEEEEEeCCC----CHHHHHHHHHHHh
Confidence            55677889999987      37998888 7999998777653    4677777776654

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=96.20  E-value=0.037  Score=36.20  Aligned_cols=46  Identities=13%  Similarity=0.213  Sum_probs=33.6

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|...++++.|++.      ..|+.+++ ++|+++..+.|.     +.+++.+.|+++
T Consensus        65 ~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~  110 (112)
T 1syr_A           65 VDEVSEVTEKENIT------SMPTFKVY-KNGSSVDTLLGA-----NDSALKQLIEKY  110 (112)
T ss_dssp             TTTTHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHTT
T ss_pred             CCCCHHHHHHcCCC------cccEEEEE-ECCcEEEEEeCC-----CHHHHHHHHHHh
Confidence            45567889999987      36875555 799998877664     367788877765

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=96.19  E-value=0.048  Score=35.96  Aligned_cols=48  Identities=17%  Similarity=0.300  Sum_probs=35.1

Q ss_pred             EecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         62 LSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        62 lsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      =.|.+.++++.||+.      ..|+.+++ ++|+++..+.|..     .+++.+.|+++.
T Consensus        72 d~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~-----~~~l~~~l~~~l  119 (122)
T 2vlu_A           72 DVDELKPIAEQFSVE------AMPTFLFM-KEGDVKDRVVGAI-----KEELTAKVGLHA  119 (122)
T ss_dssp             ETTTCHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESSC-----HHHHHHHHHHHH
T ss_pred             ECCCCHHHHHHcCCC------cccEEEEE-eCCEEEEEEeCcC-----HHHHHHHHHHHh
Confidence            346678899999987      36876555 8999998877653     566777776543

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=96.18  E-value=0.048  Score=38.00  Aligned_cols=49  Identities=10%  Similarity=0.154  Sum_probs=38.2

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcccc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLV  123 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~  123 (145)
                      .|...++++.||+.      ..|++++++ +|+++....|.     +.+++.+.|+++...
T Consensus        71 ~~~~~~l~~~~~v~------~~Pt~~~~~-~G~~~~~~~G~-----~~~~l~~~i~~~l~~  119 (153)
T 2wz9_A           71 AEGVPEVSEKYEIS------SVPTFLFFK-NSQKIDRLDGA-----HAPELTKKVQRHASS  119 (153)
T ss_dssp             TTTSHHHHHHTTCC------SSSEEEEEE-TTEEEEEEESS-----CHHHHHHHHHHHSCT
T ss_pred             CCCCHHHHHHcCCC------CCCEEEEEE-CCEEEEEEeCC-----CHHHHHHHHHHHhcc
Confidence            56678899999987      379999998 99998877764     356788888776543

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=96.17  E-value=0.053  Score=36.91  Aligned_cols=50  Identities=14%  Similarity=0.240  Sum_probs=37.7

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      +=.|...++++.|++.      ..|+.+++ ++|+++..+.|..    +.+++.+.|+++.
T Consensus        88 vd~~~~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~i~~~l  137 (140)
T 1v98_A           88 VNVDEHPGLAARYGVR------SVPTLVLF-RRGAPVATWVGAS----PRRVLEERLRPYL  137 (140)
T ss_dssp             EETTTCHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHCCCC------ccCEEEEE-eCCcEEEEEeCCC----CHHHHHHHHHHHH
Confidence            3356678899999987      37998888 8999998887763    3677777776543

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=96.10  E-value=0.024  Score=39.81  Aligned_cols=49  Identities=10%  Similarity=0.074  Sum_probs=35.0

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEE---------EEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLR---------SMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~---------~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|...++++.|++.      ..|+++ ++++|+++         ....|.   ..+.+++.+.|+.+-
T Consensus        63 ~d~~~~l~~~~~v~------~~Pt~~-~~~~G~~v~~~~g~~~~~~~~G~---~~~~~~l~~~l~~~~  120 (149)
T 3gix_A           63 VDQTAVYTQYFDIS------YIPSTV-FFFNGQHMKVDYGSPDHTKFVGS---FKTKQDFIDLIEVIY  120 (149)
T ss_dssp             TTTCCHHHHHTTCC------SSSEEE-EEETTEEEEEECSSSCCSCEESC---CSSHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHcCCC------ccCeEE-EEECCeEEEeecCCCCCCeEeee---cCCHHHHHHHHHHHH
Confidence            46677889999987      379988 66899999         444441   134677777777664

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=96.08  E-value=0.063  Score=34.51  Aligned_cols=49  Identities=8%  Similarity=0.165  Sum_probs=37.6

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +=.|...++++.|++.      ..|+++++ ++|+++..+.|..    +.+++.+.|+++
T Consensus        60 vd~~~~~~l~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~~  108 (111)
T 3gnj_A           60 VDVEEEKTLFQRFSLK------GVPQILYF-KDGEYKGKMAGDV----EDDEVEQMIADV  108 (111)
T ss_dssp             EETTTCHHHHHHTTCC------SSCEEEEE-ETTEEEEEEESSC----CHHHHHHHHHHH
T ss_pred             EECCcChhHHHhcCCC------cCCEEEEE-ECCEEEEEEeccC----CHHHHHHHHHHH
Confidence            3356788899999987      37999999 8999988877763    467777777654

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.04  E-value=0.034  Score=37.16  Aligned_cols=48  Identities=13%  Similarity=0.139  Sum_probs=35.4

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|.+.++++.|++.      ..|++++++++|++...+.|.    ++.+++++.|.+.
T Consensus        75 ~~~~~~l~~~~~v~------~~Pt~~~~~~~~~~~~~~~G~----~~~~~l~~~l~~~  122 (130)
T 2dml_A           75 ADKHQSLGGQYGVQ------GFPTIKIFGANKNKPEDYQGG----RTGEAIVDAALSA  122 (130)
T ss_dssp             TTTCHHHHHHHTCC------SSSEEEEESSCTTSCEECCSC----CSHHHHHHHHHHH
T ss_pred             CCCCHHHHHHcCCC------ccCEEEEEeCCCCeEEEeecC----CCHHHHHHHHHHH
Confidence            45678899999987      379999999999855555554    3467777766544

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=96.01  E-value=0.073  Score=34.11  Aligned_cols=46  Identities=17%  Similarity=0.258  Sum_probs=34.9

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      .|...++++.|++.      ..|+.+++ ++|+++..+.|.    .+.+++.+.|++
T Consensus        64 ~~~~~~l~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~  109 (111)
T 3uvt_A           64 CTAERNICSKYSVR------GYPTLLLF-RGGKKVSEHSGG----RDLDSLHRFVLS  109 (111)
T ss_dssp             TTTCHHHHHHTTCC------SSSEEEEE-ETTEEEEEECSC----CSHHHHHHHHHH
T ss_pred             ccccHhHHHhcCCC------cccEEEEE-eCCcEEEeccCC----cCHHHHHHHHHh
Confidence            45577889999987      37987777 899998877665    357888887764

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=95.94  E-value=0.077  Score=34.70  Aligned_cols=48  Identities=15%  Similarity=0.217  Sum_probs=36.8

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|.+.++++.|++.      ..|+.+++ ++|+++..+.|..    +.+++.+.|+++.
T Consensus        70 ~~~~~~~~~~~~i~------~~Pt~~~~-~~g~~~~~~~G~~----~~~~l~~~l~~~l  117 (121)
T 2i1u_A           70 VDTNPETARNFQVV------SIPTLILF-KDGQPVKRIVGAK----GKAALLRELSDVV  117 (121)
T ss_dssp             TTTCHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHTCSCC
T ss_pred             CCCCHHHHHhcCCC------cCCEEEEE-ECCEEEEEecCCC----CHHHHHHHHHHHH
Confidence            56678899999987      36998777 6999988877763    4677888777654

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=95.94  E-value=0.0015  Score=46.75  Aligned_cols=50  Identities=8%  Similarity=0.111  Sum_probs=35.1

Q ss_pred             HHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCC------CCCHHHHHHHHHhccc
Q psy17183         69 ISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQV------GRNLKEILRQVEAFQL  122 (145)
Q Consensus        69 va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~------~~~~~ell~~i~~l~~  122 (145)
                      ++..|++.    +...|+++++|++|+++....|....      ..+.+++++.|+.+..
T Consensus        93 ~~~~~~~~----~~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~  148 (164)
T 1sen_A           93 KDEDFSPD----GGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQE  148 (164)
T ss_dssp             SCGGGCTT----CSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHH
T ss_pred             HHHHhccc----CCcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHH
Confidence            56667663    22479999999999998877775321      2567888888776643

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=95.93  E-value=0.076  Score=34.82  Aligned_cols=46  Identities=15%  Similarity=0.284  Sum_probs=33.7

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|...++++.||+.      ..|+.+++ ++|+++..+.|.     +.+++.+.|+++
T Consensus        71 ~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~  116 (117)
T 2xc2_A           71 VDKLEETARKYNIS------AMPTFIAI-KNGEKVGDVVGA-----SIAKVEDMIKKF  116 (117)
T ss_dssp             TTTSHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred             CCccHHHHHHcCCC------ccceEEEE-eCCcEEEEEeCC-----CHHHHHHHHHHh
Confidence            45678899999987      36886655 899998877763     356777777653

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=95.92  E-value=0.041  Score=37.54  Aligned_cols=48  Identities=10%  Similarity=0.111  Sum_probs=35.9

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEE-CCCCc--EEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYII-DKRGY--LRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfII-D~dG~--I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|...++++.||+.      ..|+++++ |++|+  ++....|.     +.+++.+.|+++.
T Consensus        78 ~~~~~~l~~~~~v~------~~Pt~~~~~~~~g~g~~~~~~~G~-----~~~~l~~~l~~~l  128 (133)
T 3cxg_A           78 VDIHPKLNDQHNIK------ALPTFEFYFNLNNEWVLVHTVEGA-----NQNDIEKAFQKYC  128 (133)
T ss_dssp             TTTCHHHHHHTTCC------SSSEEEEEEEETTEEEEEEEEESC-----CHHHHHHHHHHHS
T ss_pred             ccchHHHHHhcCCC------CCCEEEEEEecCCCeEEEEEEcCC-----CHHHHHHHHHHHH
Confidence            45678899999987      37999998 45665  88777764     3578888887664

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=95.85  E-value=0.098  Score=33.19  Aligned_cols=48  Identities=10%  Similarity=0.158  Sum_probs=36.5

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +=.|...++++.|++.      ..|+.+++ ++|+++..+.|.     +.+++.+.|+++
T Consensus        57 vd~~~~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~l~~~  104 (105)
T 3m9j_A           57 VDVDDCQDVASESEVK------SMPTFQFF-KKGQKVGEFSGA-----NKEKLEATINEL  104 (105)
T ss_dssp             EETTTCHHHHHHTTCC------BSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred             EEhhhhHHHHHHcCCC------cCcEEEEE-ECCeEEEEEeCC-----CHHHHHHHHHHh
Confidence            3356788899999987      47999999 889998877765     356777776653

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=95.83  E-value=0.097  Score=33.96  Aligned_cols=49  Identities=16%  Similarity=0.266  Sum_probs=36.2

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      +=.|...++++.|++.      ..|+.+++ ++|+++....|.     +.+++.+.|+++.
T Consensus        65 v~~~~~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~l~~~~  113 (118)
T 2vm1_A           65 VDVDELKDVAEAYNVE------AMPTFLFI-KDGEKVDSVVGG-----RKDDIHTKIVALM  113 (118)
T ss_dssp             EETTTSHHHHHHTTCC------SBSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHHH
T ss_pred             EEcccCHHHHHHcCCC------cCcEEEEE-eCCeEEEEecCC-----CHHHHHHHHHHHh
Confidence            3356778899999987      36987777 899998877663     3567777776653

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=95.82  E-value=0.13  Score=32.64  Aligned_cols=48  Identities=19%  Similarity=0.216  Sum_probs=34.2

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +=.|...++++.|++.      ..|+.+++ ++|+++..+.|.     +.+++.+.|+++
T Consensus        58 v~~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~i~~~  105 (106)
T 1xwb_A           58 VDVDECEDIAMEYNIS------SMPTFVFL-KNGVKVEEFAGA-----NAKRLEDVIKAN  105 (106)
T ss_dssp             EETTTCHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHT
T ss_pred             EeccchHHHHHHcCCC------cccEEEEE-cCCcEEEEEcCC-----CHHHHHHHHHHh
Confidence            3356678899999987      36885555 899998877762     356677777653

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=95.73  E-value=0.13  Score=32.42  Aligned_cols=47  Identities=13%  Similarity=0.163  Sum_probs=34.1

Q ss_pred             EecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         62 LSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        62 lsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      =.|...++++.|++.      ..|+.+++ ++|+++....|.     +.+++.+.|+++
T Consensus        57 ~~~~~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G~-----~~~~l~~~l~~~  103 (104)
T 2vim_A           57 DVDQNEEAAAKYSVT------AMPTFVFI-KDGKEVDRFSGA-----NETKLRETITRH  103 (104)
T ss_dssp             ETTTCHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred             eccCCHHHHHHcCCc------cccEEEEE-eCCcEEEEEeCC-----CHHHHHHHHHhh
Confidence            345678899999987      36986666 699998887762     356777777653

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=95.68  E-value=0.095  Score=35.40  Aligned_cols=48  Identities=13%  Similarity=0.214  Sum_probs=35.0

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +=.|...++++.|++.      ..|+.+++ ++|+++..+.|.     +.+++.+.|+++
T Consensus        74 vd~d~~~~l~~~~~v~------~~Pt~~i~-~~G~~~~~~~G~-----~~~~l~~~l~~~  121 (125)
T 1r26_A           74 VDADNNSEIVSKCRVL------QLPTFIIA-RSGKMLGHVIGA-----NPGMLRQKLRDI  121 (125)
T ss_dssp             EETTTCHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHcCCC------cccEEEEE-eCCeEEEEEeCC-----CHHHHHHHHHHH
Confidence            3356678899999987      36986666 999998877762     356777777655

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=95.66  E-value=0.1  Score=33.55  Aligned_cols=46  Identities=2%  Similarity=-0.029  Sum_probs=33.7

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|...++++.|++.      ..|+.+++ ++|+++..+.|..     .+++.+.|+++
T Consensus        60 ~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~-----~~~l~~~l~~~  105 (107)
T 1gh2_A           60 VHQCQGTAATNNIS------ATPTFQFF-RNKVRIDQYQGAD-----AVGLEEKIKQH  105 (107)
T ss_dssp             TTTSHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESSC-----HHHHHHHHHHH
T ss_pred             CccCHHHHHhcCCC------cccEEEEE-ECCeEEEEEeCCC-----HHHHHHHHHHh
Confidence            56678899999987      37988777 8999988777642     34566666543

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=95.51  E-value=0.09  Score=33.84  Aligned_cols=48  Identities=15%  Similarity=0.244  Sum_probs=34.2

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +=.|...++++.||+.      ..|+.+++ ++|+++..+.|. .    .+++.+.|+++
T Consensus        63 v~~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~g~-~----~~~l~~~l~~~  110 (113)
T 1ti3_A           63 VDVDELKAVAEEWNVE------AMPTFIFL-KDGKLVDKTVGA-D----KDGLPTLVAKH  110 (113)
T ss_dssp             EETTTCHHHHHHHHCS------STTEEEEE-ETTEEEEEEECC-C----TTHHHHHHHHH
T ss_pred             EEccccHHHHHhCCCC------cccEEEEE-eCCEEEEEEecC-C----HHHHHHHHHHh
Confidence            3356778999999987      36988877 799999888773 2    24555555543

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=95.37  E-value=0.048  Score=36.86  Aligned_cols=47  Identities=17%  Similarity=0.241  Sum_probs=34.3

Q ss_pred             cCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccc
Q psy17183         64 DSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQL  122 (145)
Q Consensus        64 D~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~  122 (145)
                      |.+.++++.|++.      ..|+++|+ ++|+ +..+.|.    ++.+++.+.|+++..
T Consensus        78 ~~~~~~~~~~~v~------~~Pt~~~~-~~G~-~~~~~g~----~~~~~l~~~l~~~~~  124 (140)
T 2dj1_A           78 TSASMLASKFDVS------GYPTIKIL-KKGQ-AVDYDGS----RTQEEIVAKVREVSQ  124 (140)
T ss_dssp             TTCHHHHHHTTCC------SSSEEEEE-ETTE-EEECCSC----CCHHHHHHHHHHHHS
T ss_pred             cccHHHHHHCCCC------ccCeEEEE-ECCc-EEEcCCC----CCHHHHHHHHHHhcC
Confidence            4567889999987      37999999 8898 4444443    457888888877653

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=95.36  E-value=0.039  Score=36.14  Aligned_cols=48  Identities=15%  Similarity=0.219  Sum_probs=38.4

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|...++++.||+.      ..|+++++ ++|+++..+.|..    +.+++.+.|++..
T Consensus        58 ~~~~~~l~~~~~v~------~~Pt~~~~-~~G~~v~~~~G~~----~~~~l~~~~~~~~  105 (110)
T 2l6c_A           58 SEARPELMKELGFE------RVPTLVFI-RDGKVAKVFSGIM----NPRELQALYASIH  105 (110)
T ss_dssp             GGGCHHHHHHTTCC------SSCEEEEE-ESSSEEEEEESCC----CHHHHHHHHHTC-
T ss_pred             CcCCHHHHHHcCCc------ccCEEEEE-ECCEEEEEEcCCC----CHHHHHHHHHHHh
Confidence            46688899999987      37999999 9999998888763    4678888887765

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=95.36  E-value=0.038  Score=36.45  Aligned_cols=52  Identities=8%  Similarity=-0.053  Sum_probs=35.6

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|...++++.|++.      ..|+++++++.|.+ ....|....+++.+++.+.|+++.
T Consensus        61 ~~~~~~~~~~~~v~------~~Pt~~~~~~~~~~-~~~~g~~~~~~~~~~l~~~l~~~l  112 (122)
T 3aps_A           61 CQAYPQTCQKAGIK------AYPSVKLYQYERAK-KSIWEEQINSRDAKTIAALIYGKL  112 (122)
T ss_dssp             TTTCHHHHHHTTCC------SSSEEEEEEEEGGG-TEEEEEEECCSCHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHcCCC------ccceEEEEeCCCcc-ceeeccccCcCCHHHHHHHHHHHH
Confidence            45677889999987      37999999888874 444453212245677777776654

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=95.30  E-value=0.023  Score=38.41  Aligned_cols=47  Identities=15%  Similarity=0.279  Sum_probs=37.1

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|.+.++++.||+.      ..|+++++ ++|+++....|..    +.+++.+.|+++
T Consensus        75 ~d~~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~  121 (123)
T 1oaz_A           75 IDQNPGTAPKYGIR------GIPTLLLF-KNGEVAATKVGAL----SKGQLKEFLDAN  121 (123)
T ss_dssp             TTSCTTTGGGGTCC------BSSEEEEE-ESSSEEEEEESCC----CHHHHHHHHTTT
T ss_pred             CCCCHHHHHHcCCC------ccCEEEEE-ECCEEEEEEeCCC----CHHHHHHHHHHH
Confidence            45667788899987      37999999 9999998877763    467888887764

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=95.29  E-value=0.071  Score=39.07  Aligned_cols=48  Identities=13%  Similarity=0.210  Sum_probs=36.1

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|...++++.|++.      ..|+++++ ++|+++..+.|.    ++.+++.+.|+++.
T Consensus       154 ~~~~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~i~~~l  201 (210)
T 3apq_A          154 CGDDRMLCRMKGVN------SYPSLFIF-RSGMAAVKYNGD----RSKESLVAFAMQHV  201 (210)
T ss_dssp             TTTCHHHHHHTTCC------SSSEEEEE-CTTSCCEECCSC----CCHHHHHHHHHHHH
T ss_pred             CCccHHHHHHcCCC------cCCeEEEE-ECCCceeEecCC----CCHHHHHHHHHHhC
Confidence            45567788889887      37999999 999997776664    35678888877654

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=95.28  E-value=0.085  Score=36.57  Aligned_cols=65  Identities=11%  Similarity=0.122  Sum_probs=40.4

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecC-----CCCC-CHHHHHHHHHhccccccCC---cccCCC
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDI-----QVGR-NLKEILRQVEAFQLVDSTD---TQCPVN  133 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~-----~~~~-~~~ell~~i~~l~~~~~~~---~~~p~~  133 (145)
                      .|.+.++++.|++.      ..|+++++ ++|+++....+..     .... +.+++.+.|+++......+   ..||.+
T Consensus        63 ~d~~~~~~~~~~i~------~~Pt~~~~-~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~  135 (142)
T 1qgv_A           63 ITEVPDFNKMYELY------DPCTVMFF-FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKD  135 (142)
T ss_dssp             TTTCCTTTTSSCSC------SSCEEEEE-ETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHHTTTCSEEECCCC
T ss_pred             cccCHHHHHHcCCC------CCCEEEEE-ECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHHhcCCeEEeCCCC
Confidence            44556678888887      47999988 6898887655421     1112 3678888777765432222   447766


Q ss_pred             C
Q psy17183        134 W  134 (145)
Q Consensus       134 w  134 (145)
                      .
T Consensus       136 ~  136 (142)
T 1qgv_A          136 Y  136 (142)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=95.21  E-value=0.13  Score=38.13  Aligned_cols=49  Identities=14%  Similarity=0.249  Sum_probs=36.3

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQL  122 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~  122 (145)
                      .|....+++.|++.      ..|+.+++ ++|+++....|..    +.+++.+.|+.+..
T Consensus        70 ~d~~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~l~  118 (222)
T 3dxb_A           70 IDQNPGTAPKYGIR------GIPTLLLF-KNGEVAATKVGAL----SKGQLKEFLDANLA  118 (222)
T ss_dssp             TTTCTTTGGGGTCC------SBSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHcCCC------cCCEEEEE-ECCeEEEEecccc----ChHHHHHHHHhhcc
Confidence            34455677889887      37988888 5999998887763    46788888877654

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=95.20  E-value=0.13  Score=43.73  Aligned_cols=46  Identities=7%  Similarity=0.114  Sum_probs=33.6

Q ss_pred             chHHHHHhCCCccCCCCcceEEEEECC---CCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         66 THAISKTYGCYLSSAGHSLRAYYIIDK---RGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        66 ~~~va~~yg~~~~~~g~~~p~tfIID~---dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      ..++++.||+.      ..|+++++++   +|+++....+.    ++.+++.+.|..+-
T Consensus        78 ~~~l~~~~~V~------~~PTl~~f~~g~~~G~~~~~~~g~----~~~~~L~~~l~~~l  126 (519)
T 3t58_A           78 NSAVCREFNIA------GFPTVRFFQAFTKNGSGATLPGAG----ANVQTLRMRLIDAL  126 (519)
T ss_dssp             GHHHHHHTTCC------SBSEEEEECTTCCSCCCEEECCSS----CCHHHHHHHHHHHH
T ss_pred             cHHHHHHcCCc------ccCEEEEEcCcccCCCceeEecCC----CCHHHHHHHHHHHH
Confidence            45678889987      3799999998   78766554443    56788888776654

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=95.06  E-value=0.076  Score=34.94  Aligned_cols=41  Identities=20%  Similarity=0.227  Sum_probs=30.4

Q ss_pred             hHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHH
Q psy17183         67 HAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE  118 (145)
Q Consensus        67 ~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~  118 (145)
                      .++++.||+.      ..|+++++ ++|+++....|.    .+.+++.+.|+
T Consensus        77 ~~~~~~~~i~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~  117 (118)
T 1zma_A           77 QAFRSRYGIP------TVPGFVHI-TDGQINVRCDSS----MSAQEIKDFAG  117 (118)
T ss_dssp             HHHHHHHTCC------SSCEEEEE-ETTEEEEECCTT----CCHHHHHHHHT
T ss_pred             HHHHHHcCCC------CCCeEEEE-ECCEEEEEecCC----CCHHHHHHHhh
Confidence            4678899987      37999999 599988766654    34677777664

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=94.97  E-value=0.057  Score=35.74  Aligned_cols=47  Identities=17%  Similarity=0.217  Sum_probs=36.2

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      +=.|...++++.||+.      ..|+.+++ ++|+++..+.|.     +.+++.+.|++
T Consensus        57 vd~d~~~~l~~~~~V~------~~PT~~~~-~~G~~v~~~~G~-----~~~~l~~~i~k  103 (105)
T 3zzx_A           57 VDVDECEDIAQDNQIA------CMPTFLFM-KNGQKLDSLSGA-----NYDKLLELVEK  103 (105)
T ss_dssp             EETTTCHHHHHHTTCC------BSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHH
T ss_pred             EecccCHHHHHHcCCC------eecEEEEE-ECCEEEEEEeCc-----CHHHHHHHHHh
Confidence            3357788999999998      47976666 899999888763     46788887764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=94.88  E-value=0.11  Score=39.53  Aligned_cols=48  Identities=13%  Similarity=0.180  Sum_probs=35.3

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|.+.++++.||+.      ..|+++++ ++|+++..+.|..    +.+.+.+.|+...
T Consensus        66 ~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~g~~----~~~~l~~~l~~~l  113 (287)
T 3qou_A           66 CDAEQMIAAQFGLR------AIPTVYLF-QNGQPVDGFQGPQ----PEEAIRALLDXVL  113 (287)
T ss_dssp             TTTCHHHHHTTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHHS
T ss_pred             CccCHHHHHHcCCC------CCCeEEEE-ECCEEEEEeeCCC----CHHHHHHHHHHHc
Confidence            45567888889987      37999999 7999998887763    3556666665543

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=94.32  E-value=0.073  Score=37.70  Aligned_cols=50  Identities=8%  Similarity=0.118  Sum_probs=39.5

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      +=.|.+.+++..||+.      ++|+.+++ ++|+++...+|..+    -+++.+.|+++.
T Consensus        73 VdvDe~~~la~~ygV~------siPTlilF-kdG~~v~~~vG~~~----k~~l~~~l~~~l  122 (137)
T 2qsi_A           73 VAAEAERGLMARFGVA------VCPSLAVV-QPERTLGVIAKIQD----WSSYLAQIGAML  122 (137)
T ss_dssp             ECGGGHHHHHHHHTCC------SSSEEEEE-ECCEEEEEEESCCC----HHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHcCCc------cCCEEEEE-ECCEEEEEEeCCCC----HHHHHHHHHHHh
Confidence            3367788999999998      58999999 99999999998754    456666666544

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=94.18  E-value=0.28  Score=32.60  Aligned_cols=48  Identities=6%  Similarity=-0.107  Sum_probs=34.6

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEE-EEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLR-SMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~-~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|.+.++++.|++.      ..|+.+++++.+++. ..+.|    .++.+++.+.|+++
T Consensus        78 ~~~~~~l~~~~~v~------~~Pt~~~~~~g~~~~~~~~~G----~~~~~~l~~~i~~~  126 (127)
T 3h79_A           78 GEKYPDVIERMRVS------GFPTMRYYTRIDKQEPFEYSG----QRYLSLVDSFVFQN  126 (127)
T ss_dssp             TTTCHHHHHHTTCC------SSSEEEEECSSCSSSCEECCS----CCCHHHHHHHHHHH
T ss_pred             ccccHhHHHhcCCc------cCCEEEEEeCCCCCCceEecC----CccHHHHHHHHHhc
Confidence            45677889999988      379999998777653 22333    35788888888754

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=94.18  E-value=0.061  Score=38.26  Aligned_cols=50  Identities=14%  Similarity=0.250  Sum_probs=39.3

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      +=.|.+.+++..||+.      ++|+.+++ ++|+++...+|..+    -+++.+.|+++.
T Consensus        75 VdvDe~~~lA~~ygV~------sIPTlilF-k~G~~v~~~~G~~~----k~~l~~~i~~~l  124 (140)
T 2qgv_A           75 ADLEQSEAIGDRFGAF------RFPATLVF-TGGNYRGVLNGIHP----WAELINLMRGLV  124 (140)
T ss_dssp             CCHHHHHHHHHHHTCC------SSSEEEEE-ETTEEEEEEESCCC----HHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHcCCc------cCCEEEEE-ECCEEEEEEecCCC----HHHHHHHHHHHh
Confidence            3367789999999998      58999888 99999999988743    456666666543

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.05  E-value=0.23  Score=33.57  Aligned_cols=40  Identities=13%  Similarity=0.044  Sum_probs=24.3

Q ss_pred             CchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCC
Q psy17183         65 STHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQ  105 (145)
Q Consensus        65 ~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~  105 (145)
                      ...++++.|++.....-...|+++++ ++|+++..+.|..+
T Consensus        69 ~~~~~~~~~~v~~~~~~~~~Pt~~~~-~~G~~~~~~~G~~~  108 (137)
T 2dj0_A           69 RYTDVSTRYKVSTSPLTKQLPTLILF-QGGKEAMRRPQIDK  108 (137)
T ss_dssp             TCHHHHHHTTCCCCSSSSCSSEEEEE-SSSSEEEEESCBCS
T ss_pred             cCHHHHHHccCcccCCcCCCCEEEEE-ECCEEEEEecCcCc
Confidence            34445555555310000136999988 89999988887643

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=93.99  E-value=0.16  Score=36.99  Aligned_cols=53  Identities=9%  Similarity=0.016  Sum_probs=34.1

Q ss_pred             EEecCchHHHHHh--------CCCccCCCCcceEEEEECCCCcEEEEEeecCCC----CCCHHHHHHHHHh
Q psy17183         61 LLSDSTHAISKTY--------GCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQV----GRNLKEILRQVEA  119 (145)
Q Consensus        61 llsD~~~~va~~y--------g~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~----~~~~~ell~~i~~  119 (145)
                      +=.|...++++.|        |+.      ..|+++++|++|++++...+..+.    ...+.++|+.+..
T Consensus        80 VD~de~~~l~~~y~~~~q~~~gv~------g~Pt~v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~  144 (173)
T 3ira_A           80 VDREERPDIDNIYMTVCQIILGRG------GWPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKE  144 (173)
T ss_dssp             EETTTCHHHHHHHHHHHHHHHSCC------CSSEEEEECTTSCEEEEESSCCSSCBTTBCCHHHHHHHHHH
T ss_pred             eCCcccCcHHHHHHHHHHHHcCCC------CCcceeeECCCCCceeeeeeCCCCcCCCCCCHHHHHHHHHH
Confidence            3334456677777        665      379999999999999874332121    1246777766644

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=93.66  E-value=0.43  Score=34.72  Aligned_cols=47  Identities=13%  Similarity=0.010  Sum_probs=34.8

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|...++++.||+.      ..|+++++ ++|+++..+.|..    +.+++.+.|+++
T Consensus       178 ~~~~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~  224 (226)
T 1a8l_A          178 AIEYPEWADQYNVM------AVPKIVIQ-VNGEDRVEFEGAY----PEKMFLEKLLSA  224 (226)
T ss_dssp             GGGCHHHHHHTTCC------SSCEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred             cccCHHHHHhCCCc------ccCeEEEE-eCCceeEEEcCCC----CHHHHHHHHHHh
Confidence            45677889999987      36996666 7999988777763    456777777654

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=93.28  E-value=0.55  Score=31.85  Aligned_cols=45  Identities=16%  Similarity=0.278  Sum_probs=32.1

Q ss_pred             HHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCC---CCHHHHHHHHHhccc
Q psy17183         71 KTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVG---RNLKEILRQVEAFQL  122 (145)
Q Consensus        71 ~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~---~~~~ell~~i~~l~~  122 (145)
                      +.|++.      ..|+.++++ +|+++....|....+   ...+++.+.|++...
T Consensus        74 ~~~~i~------~~Pt~~~~~-~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~~  121 (135)
T 2dbc_A           74 EHYHDN------CLPTIFVYK-NGQIEGKFIGIIECGGINLKLEELEWKLSEVGA  121 (135)
T ss_dssp             SSCCSS------CCSEEEEES-SSSCSEEEESTTTTTCTTCCHHHHHHHHHHHTS
T ss_pred             ccCCCC------CCCEEEEEE-CCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcCC
Confidence            567766      479998885 999999988875332   256777777776543

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=93.26  E-value=0.32  Score=34.96  Aligned_cols=18  Identities=11%  Similarity=0.071  Sum_probs=15.9

Q ss_pred             cceEEEEECCCCcEEEEE
Q psy17183         83 SLRAYYIIDKRGYLRSMN  100 (145)
Q Consensus        83 ~~p~tfIID~dG~I~~~~  100 (145)
                      ..|+++++|++|+++..+
T Consensus       110 ~iPt~i~~~~~G~~~~~~  127 (167)
T 1z6n_A          110 AIPLVLVLDEEFNLLGRF  127 (167)
T ss_dssp             CSSEEEEECTTCCEEEEE
T ss_pred             CcCeEEEECCCCCEEEEE
Confidence            579999999999998766

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=92.20  E-value=0.017  Score=38.72  Aligned_cols=47  Identities=9%  Similarity=0.135  Sum_probs=33.3

Q ss_pred             CchHHHHHhCCCccCCCCcceEEEEECC-CCcE--EEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         65 STHAISKTYGCYLSSAGHSLRAYYIIDK-RGYL--RSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        65 ~~~~va~~yg~~~~~~g~~~p~tfIID~-dG~I--~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      ...++++.|++.      ..|+++|+|+ +|++  +....|..+    .+++.+.|+++.
T Consensus        66 ~~~~~~~~~~v~------~~Pt~~~~d~~~G~~~~~~~~~G~~~----~~~l~~~l~~~~  115 (130)
T 2lst_A           66 EGQELARRYRVP------GTPTFVFLVPKAGAWEEVGRLFGSRP----RAEFLKELRQVC  115 (130)
Confidence            456788889887      3799999996 5998  777776543    345666655543

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=93.02  E-value=0.44  Score=34.80  Aligned_cols=47  Identities=15%  Similarity=0.240  Sum_probs=33.1

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|.+.++++.||+.      ..|++++++ +|+++ .+.|    .++.+++.+.++...
T Consensus        75 ~~~~~~l~~~~~v~------~~Pt~~~~~-~g~~~-~~~g----~~~~~~l~~~i~~~~  121 (241)
T 3idv_A           75 ATSASVLASRFDVS------GYPTIKILK-KGQAV-DYEG----SRTQEEIVAKVREVS  121 (241)
T ss_dssp             TTTCHHHHHHTTCC------SSSEEEEEE-TTEEE-ECCS----CSCHHHHHHHHHHHH
T ss_pred             ccCCHHHHHhcCCC------cCCEEEEEc-CCCcc-cccC----cccHHHHHHHHhhcc
Confidence            45677899999988      379999995 67655 2333    356788888777654

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=92.56  E-value=0.24  Score=32.96  Aligned_cols=76  Identities=11%  Similarity=0.014  Sum_probs=47.9

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG   81 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g   81 (145)
                      |....|.|.+++  +++.. ++.++.|+.++..   .|.                       |....+++.|++.     
T Consensus        46 C~~~~p~l~~~~--~~~~~-~~~~~~vd~~~~~---~~~-----------------------d~~~~~~~~~~i~-----   91 (123)
T 1wou_A           46 CVQAEPVVREGL--KHISE-GCVFIYCQVGEKP---YWK-----------------------DPNNDFRKNLKVT-----   91 (123)
T ss_dssp             HHHHHHHHHHHG--GGCCT-TEEEEEEECCCHH---HHH-----------------------CTTCHHHHHHCCC-----
T ss_pred             HHHhhHHHHHHH--HHcCC-CcEEEEEECCCch---hhh-----------------------chhHHHHHHCCCC-----
Confidence            777778887776  35543 6778888776421   121                       3456688889987     


Q ss_pred             CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHH
Q psy17183         82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE  118 (145)
Q Consensus        82 ~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~  118 (145)
                       ..|+++++++.+++    .+..  +.+.+++.+.|+
T Consensus        92 -~~Pt~~~~~~~~~~----~g~~--~~~~~~l~~~i~  121 (123)
T 1wou_A           92 -AVPTLLKYGTPQKL----VESE--CLQANLVEMLFS  121 (123)
T ss_dssp             -SSSEEEETTSSCEE----EGGG--GGCHHHHHHHHH
T ss_pred             -eeCEEEEEcCCceE----eccc--cCCHHHHHHHHh
Confidence             47999999874433    2332  234566666654

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=91.80  E-value=0.27  Score=29.80  Aligned_cols=67  Identities=9%  Similarity=0.120  Sum_probs=40.3

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG   81 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g   81 (145)
                      |....+.|.++.  +++. .++.++.|+.|.                                 +.++++.||+.     
T Consensus        17 C~~~~~~l~~~~--~~~~-~~~~~~~vd~~~---------------------------------~~~~~~~~~v~-----   55 (85)
T 1fo5_A           17 CPAAKRVVEEVA--NEMP-DAVEVEYINVME---------------------------------NPQKAMEYGIM-----   55 (85)
T ss_dssp             CCTHHHHHHHHH--HHCS-SSEEEEEEESSS---------------------------------SCCTTTSTTTC-----
T ss_pred             hHHHHHHHHHHH--HHcC-CceEEEEEECCC---------------------------------CHHHHHHCCCc-----
Confidence            666667776665  3443 356666666642                                 22335567776     


Q ss_pred             CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        82 ~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                       ..|++++   +|++  .+.|.    .+.+++.+.|++
T Consensus        56 -~~Pt~~~---~G~~--~~~G~----~~~~~l~~~l~~   83 (85)
T 1fo5_A           56 -AVPTIVI---NGDV--EFIGA----PTKEALVEAIKK   83 (85)
T ss_dssp             -CSSEEEE---TTEE--ECCSS----SSSHHHHHHHHH
T ss_pred             -ccCEEEE---CCEE--eeecC----CCHHHHHHHHHH
Confidence             3698887   8987  44443    235677777654

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=90.80  E-value=0.035  Score=35.14  Aligned_cols=47  Identities=15%  Similarity=0.233  Sum_probs=33.6

Q ss_pred             EecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         62 LSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        62 lsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      =.|.+.++++.||+.      ..|+.+++ ++|+++..+.|..+    .+++.+.|++
T Consensus        58 ~~~~~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~~~----~~~l~~~l~~  104 (106)
T 2yj7_A           58 NVDENPNTAAQYGIR------SIPTLLLF-KNGQVVDRLVGAQP----KEALKERIDK  104 (106)
Confidence            356677888899887      37999999 89999887776532    3455555543

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=91.40  E-value=1.1  Score=34.81  Aligned_cols=50  Identities=10%  Similarity=0.052  Sum_probs=31.2

Q ss_pred             CchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEee-------------cCCCCCCHHHHHHHHHhcc
Q psy17183         65 STHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVS-------------DIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        65 ~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~-------------~~~~~~~~~ell~~i~~l~  121 (145)
                      ...++++.||+.      ..|+.++++. |+++....|             .....++.+.+.+.+....
T Consensus        79 ~~~~l~~~~~I~------~~Pt~~~~~~-g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~  141 (298)
T 3ed3_A           79 KNKALCAKYDVN------GFPTLMVFRP-PKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRI  141 (298)
T ss_dssp             TTHHHHHHTTCC------BSSEEEEEEC-CCC-------------CCCEEEECCSCCSHHHHHHHHHTTC
T ss_pred             cCHHHHHhCCCC------ccceEEEEEC-CceeecccccccccccccccceeecCCcCHHHHHHHHHHhc
Confidence            457889999987      3799999965 553222211             1123467889988886654

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=91.32  E-value=0.45  Score=30.90  Aligned_cols=35  Identities=3%  Similarity=0.049  Sum_probs=24.7

Q ss_pred             cceEEEEECCCCcE-EEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         83 SLRAYYIIDKRGYL-RSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        83 ~~p~tfIID~dG~I-~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      ..|+++++++.|++ ...+.|.    ++.+++.+.|+++.
T Consensus        81 ~~Pt~~~~~~~~~~~~~~~~G~----~~~~~l~~~i~~~~  116 (121)
T 2djj_A           81 GFPTIKLYPAGAKGQPVTYSGS----RTVEDLIKFIAENG  116 (121)
T ss_dssp             SSSEEEEECSSCTTSCCCCCCC----SCHHHHHHHHHHTS
T ss_pred             cCCeEEEEeCcCCCCceEecCC----CCHHHHHHHHHhcc
Confidence            47999999988884 3344443    45788888887653

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=91.17  E-value=0.92  Score=33.68  Aligned_cols=50  Identities=4%  Similarity=0.066  Sum_probs=30.7

Q ss_pred             cCchHHHHHhCCCccCCCCcceEEEEECCCCcEE-EEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         64 DSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLR-SMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        64 D~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~-~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      |.+.++++.|++.      ..|+.+++++.+++- ...+  ...|++.+++.+.|..+-
T Consensus        76 ~~~~~l~~~~~v~------~~Pt~~~~~~g~~~~~g~~~--~~~g~~~~~l~~~i~~~l  126 (244)
T 3q6o_A           76 ETNSAVCRDFNIP------GFPTVRFFXAFTXNGSGAVF--PVAGADVQTLRERLIDAL  126 (244)
T ss_dssp             TTTHHHHHHTTCC------SSSEEEEECTTCCSSSCEEC--CCTTCCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHcCCC------ccCEEEEEeCCCcCCCCeeE--ecCCCCHHHHHHHHHHHH
Confidence            3456778889987      379999998733321 0111  122356788887776654

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=90.81  E-value=0.061  Score=38.34  Aligned_cols=55  Identities=11%  Similarity=-0.008  Sum_probs=35.3

Q ss_pred             cEEec-CchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCC------CCCHHHHHHHHHhc
Q psy17183         60 PLLSD-STHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQV------GRNLKEILRQVEAF  120 (145)
Q Consensus        60 pllsD-~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~------~~~~~ell~~i~~l  120 (145)
                      .+-.| .....+..|++.      ..|+++++|++|+++...+|....      ..+++++++.+++.
T Consensus        82 ~V~vD~e~~~~~~~~~v~------~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~a  143 (151)
T 3ph9_A           82 MLNLMHETTDKNLSPDGQ------YVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKA  143 (151)
T ss_dssp             EEEESSCCSCGGGCTTCC------CSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHH
T ss_pred             EEEecCCchhhHhhcCCC------CCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHH
Confidence            34444 234456667664      479999999999999888876111      12456666655543

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=90.68  E-value=0.15  Score=32.85  Aligned_cols=48  Identities=10%  Similarity=0.219  Sum_probs=35.1

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEE--EEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLR--SMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~--~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|...++++.|++.      ..|+.+++ ++|+++  ..+.|.    ++.+++.+.|+++.
T Consensus        67 ~~~~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~~~g~----~~~~~l~~~l~~~~  116 (120)
T 1mek_A           67 ATEESDLAQQYGVR------GYPTIKFF-RNGDTASPKEYTAG----READDIVNWLKKRT  116 (120)
T ss_dssp             TTTCCSSHHHHTCC------SSSEEEEE-ESSCSSSCEECCCC----SSHHHHHHHHHTTS
T ss_pred             CCCCHHHHHHCCCC------cccEEEEE-eCCCcCCcccccCc----cCHHHHHHHHHhcc
Confidence            34567889999987      37999999 788765  554443    45788888887654

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=90.19  E-value=1.1  Score=35.12  Aligned_cols=47  Identities=9%  Similarity=0.069  Sum_probs=34.4

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      +|...++++.||+.      ..|+.+++ ++|++ ..+.|.    ++.+++.+.++...
T Consensus        75 ~~~~~~l~~~~~v~------~~Pt~~~~-~~g~~-~~~~G~----~~~~~l~~~i~~~~  121 (350)
T 1sji_A           75 AKKEAKLAKKLGFD------EEGSLYVL-KGDRT-IEFDGE----FAADVLVEFLLDLI  121 (350)
T ss_dssp             TTTTHHHHHHHTCC------STTEEEEE-ETTEE-EEECSC----CCHHHHHHHHHTTS
T ss_pred             CCCCHHHHHhcCCC------ccceEEEE-ECCcE-EEecCC----CCHHHHHHHHHHhc
Confidence            56678889999987      37999999 78884 344443    56788888876543

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=90.16  E-value=0.62  Score=33.09  Aligned_cols=56  Identities=16%  Similarity=0.086  Sum_probs=37.9

Q ss_pred             chHHHHHhCCCccCCCCcceEEEEECCC-CcEEEEEeecCCCCCCHHHHHHHHHhcccccc--CCcccCC
Q psy17183         66 THAISKTYGCYLSSAGHSLRAYYIIDKR-GYLRSMNVSDIQVGRNLKEILRQVEAFQLVDS--TDTQCPV  132 (145)
Q Consensus        66 ~~~va~~yg~~~~~~g~~~p~tfIID~d-G~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~--~~~~~p~  132 (145)
                      ...+++.|++.      ..|++++||++ |+.+... +    +.+.+++++.|+.+.....  .++.||.
T Consensus        90 ~~~l~~~y~v~------~~P~~~fld~~~G~~l~~~-~----g~~~~~fl~~L~~~l~~~~~~~~~~~~~  148 (153)
T 2dlx_A           90 GQRYIQFYKLG------DFPYVSILDPRTGQKLVEW-H----QLDVSSFLDQVTGFLGEHGQLDGLSSSS  148 (153)
T ss_dssp             HHHHHHHHTCC------SSSEEEEECTTTCCCCEEE-S----SCCHHHHHHHHHHHHHHTCSCSSCCCCC
T ss_pred             HHHHHHHcCCC------CCCEEEEEeCCCCcEeeec-C----CCCHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence            34678899987      36999999999 8666553 2    2467888888877653222  2355663

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=89.96  E-value=0.37  Score=29.17  Aligned_cols=39  Identities=18%  Similarity=0.238  Sum_probs=25.7

Q ss_pred             hHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         67 HAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        67 ~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .++++.||+.      ..|++++   +|++  ...|..    +.+++.+.|+++
T Consensus        45 ~~~~~~~~v~------~~Pt~~~---~G~~--~~~G~~----~~~~l~~~l~~~   83 (85)
T 1nho_A           45 REKAIEYGLM------AVPAIAI---NGVV--RFVGAP----SREELFEAINDE   83 (85)
T ss_dssp             GGGGGGTCSS------CSSEEEE---TTTE--EEECSS----CCHHHHHHHHHH
T ss_pred             HHHHHhCCce------eeCEEEE---CCEE--EEccCC----CHHHHHHHHHHH
Confidence            3456778877      3698888   8988  455542    346777776653

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=89.39  E-value=0.39  Score=31.83  Aligned_cols=44  Identities=9%  Similarity=0.197  Sum_probs=27.1

Q ss_pred             HHHhCCCccCCCCcceEEEEECCCCcEEEE-EeecCCCCCCHHHHHHHHHhccc
Q psy17183         70 SKTYGCYLSSAGHSLRAYYIIDKRGYLRSM-NVSDIQVGRNLKEILRQVEAFQL  122 (145)
Q Consensus        70 a~~yg~~~~~~g~~~p~tfIID~dG~I~~~-~~~~~~~~~~~~ell~~i~~l~~  122 (145)
                      ++.|++.      ..|+++++++.|++... +.+.   .++.+++.+.|+++..
T Consensus        74 ~~~~~v~------~~Pt~~~~~~g~~~~~~~~~gg---~~~~~~l~~~l~~~~~  118 (133)
T 2dj3_A           74 NDQYKVE------GFPTIYFAPSGDKKNPIKFEGG---NRDLEHLSKFIDEHAT  118 (133)
T ss_dssp             CSSCCCS------SSSEEEEECTTCTTSCEECCSS---CCSTTHHHHHHHHHSS
T ss_pred             HhhcCCC------cCCEEEEEeCCCcccceEecCC---CcCHHHHHHHHHHhcc
Confidence            4457776      37999999888765432 2211   1345677777766543

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=88.89  E-value=2.4  Score=31.34  Aligned_cols=54  Identities=9%  Similarity=0.178  Sum_probs=39.6

Q ss_pred             CccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         58 IVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        58 ~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .++.+.|.+.++++.||+.      ..|+.++++++|++........    ..+.+-..|+.|.
T Consensus       186 ~v~~~~~~~~~l~~~f~v~------~~Pslvl~~~~g~~~~~~~~~~----~r~~~~~~l~~~~  239 (244)
T 3q6o_A          186 AVRRVLNTEANVVRKFGVT------DFPSCYLLFRNGSVSRVPVLME----SRSFYTAYLQRLS  239 (244)
T ss_dssp             EEEEEETTCHHHHHHHTCC------CSSEEEEEETTSCEEECCCSSS----SHHHHHHHHHTC-
T ss_pred             EEEEEeCchHHHHHHcCCC------CCCeEEEEeCCCCeEeeccccc----cHHHHHHHHHhCC
Confidence            6778888889999999998      3699999999999987764331    2344445555554

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=88.84  E-value=1.7  Score=31.52  Aligned_cols=47  Identities=11%  Similarity=0.104  Sum_probs=34.0

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|...++++.||+.      ..|+.++++ +|+++. +.|    .++.+++++.|++..
T Consensus       190 ~~~~~~l~~~~~v~------~~Pt~~~~~-~g~~~~-~~g----~~~~~~l~~~l~~~~  236 (241)
T 3idv_A          190 ATAETDLAKRFDVS------GYPTLKIFR-KGRPYD-YNG----PREKYGIVDYMIEQS  236 (241)
T ss_dssp             TTTCHHHHHHTTCC------SSSEEEEEE-TTEEEE-CCS----CCSHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHcCCc------ccCEEEEEE-CCeEEE-ecC----CCCHHHHHHHHHhhh
Confidence            46678899999998      379888885 677653 333    356888888887653

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=88.23  E-value=3.8  Score=30.62  Aligned_cols=43  Identities=26%  Similarity=0.321  Sum_probs=31.1

Q ss_pred             cCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         64 DSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        64 D~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      |...++++.||+.      +.|++||   +|+++  +.|.    ++.+++++.|+...
T Consensus       183 ~~~~~~~~~~~V~------~vPt~~i---~G~~~--~~G~----~~~~~l~~~l~~~~  225 (243)
T 2hls_A          183 YENPDIADKYGVM------SVPSIAI---NGYLV--FVGV----PYEEDFLDYVKSAA  225 (243)
T ss_dssp             TTCHHHHHHTTCC------SSSEEEE---TTEEE--EESC----CCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHcCCe------eeCeEEE---CCEEE--EeCC----CCHHHHHHHHHHHh
Confidence            3466788999987      4799888   78875  4454    45778888777654

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=87.62  E-value=2  Score=35.34  Aligned_cols=48  Identities=8%  Similarity=0.023  Sum_probs=33.1

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcE--EEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYL--RSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I--~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      +|...++++.||+.      ..|+.+++ ++|++  ...+.|.    ++.+++.+.|....
T Consensus        72 ~~~~~~l~~~~~v~------~~Pt~~~~-~~g~~~~~~~~~G~----~~~~~l~~~l~~~~  121 (504)
T 2b5e_A           72 CTENQDLCMEHNIP------GFPSLKIF-KNSDVNNSIDYEGP----RTAEAIVQFMIKQS  121 (504)
T ss_dssp             TTTCHHHHHHTTCC------SSSEEEEE-ETTCTTCEEECCSC----CSHHHHHHHHHHHT
T ss_pred             CCCCHHHHHhcCCC------cCCEEEEE-eCCccccceeecCC----CCHHHHHHHHHHhc
Confidence            44567788899987      36999998 45765  4444443    56788888776544

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=86.83  E-value=3.2  Score=33.01  Aligned_cols=48  Identities=13%  Similarity=0.245  Sum_probs=34.0

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEE-EeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSM-NVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~-~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      +|...++++.||+.      ..|+.+++ ++|+++.. +.|.    ++.+++.+.|....
T Consensus        68 ~~~~~~l~~~~~v~------~~Pt~~~f-~~G~~~~~~~~G~----~~~~~l~~~i~~~~  116 (382)
T 2r2j_A           68 CDQHSDIAQRYRIS------KYPTLKLF-RNGMMMKREYRGQ----RSVKALADYIRQQK  116 (382)
T ss_dssp             TTTCHHHHHHTTCC------EESEEEEE-ETTEEEEEECCSC----CSHHHHHHHHHHHH
T ss_pred             CCccHHHHHhcCCC------cCCEEEEE-eCCcEeeeeecCc----chHHHHHHHHHHhc
Confidence            45567889999987      37988877 78988753 3343    56788888776543

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=86.48  E-value=0.99  Score=39.35  Aligned_cols=52  Identities=8%  Similarity=-0.023  Sum_probs=37.9

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|....+++.||+.      ..|+++++ ++|+++....|.....++.+++.+.|+++.
T Consensus       715 ~~~~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G~~~g~~~~~~l~~~l~~~l  766 (780)
T 3apo_A          715 CQAYPQTCQKAGIK------AYPSVKLY-QYERAKKSIWEEQINSRDAKTIAALIYGKL  766 (780)
T ss_dssp             TTTCHHHHHHTTCC------SSSEEEEE-EEETTTTEEEEEEECCCCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHhcCCC------cCCEEEEE-cCCCccccccCcccCCcCHHHHHHHHHHHH
Confidence            45577889999987      37999999 889887766664211246788888887665

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=86.34  E-value=0.56  Score=32.04  Aligned_cols=43  Identities=0%  Similarity=-0.164  Sum_probs=32.2

Q ss_pred             hHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         67 HAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        67 ~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      ..++..|++.      ..|+.++++ +|+.+....|..+    .+++++.|+.+
T Consensus        66 ~~la~~~~V~------g~PT~i~f~-~G~ev~Ri~G~~~----~~~f~~~L~~~  108 (116)
T 3dml_A           66 PGLELARPVT------FTPTFVLMA-GDVESGRLEGYPG----EDFFWPMLARL  108 (116)
T ss_dssp             TTCBCSSCCC------SSSEEEEEE-TTEEEEEEECCCC----HHHHHHHHHHH
T ss_pred             hhHHHHCCCC------CCCEEEEEE-CCEEEeeecCCCC----HHHHHHHHHHH
Confidence            3567777766      479999998 9999999988754    46666666554

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=85.96  E-value=3.7  Score=35.73  Aligned_cols=45  Identities=9%  Similarity=0.202  Sum_probs=30.6

Q ss_pred             CchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         65 STHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        65 ~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      ....+++.||+.      ..|+++++ ++|++ +.+.|.    ++.+++.+.++.+.
T Consensus       497 ~~~~~~~~~~v~------~~Pt~~~~-~~g~~-~~~~g~----~~~~~l~~fi~~~~  541 (780)
T 3apo_A          497 IHEGLCNMYNIQ------AYPTTVVF-NQSSI-HEYEGH----HSAEQILEFIEDLR  541 (780)
T ss_dssp             TCHHHHHHTTCC------SSSEEEEE-ETTEE-EEECSC----SCHHHHHHHHHHHH
T ss_pred             CCHHHHHHcCCC------cCCeEEEE-cCCce-eeecCc----ccHHHHHHHHHhhc
Confidence            345577788887      37999999 56876 554443    45677777776654

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=85.77  E-value=1.6  Score=35.56  Aligned_cols=44  Identities=11%  Similarity=0.184  Sum_probs=30.4

Q ss_pred             HHHHhCCCccCCCCcceEEEEECCCCcE-EEEEeecCCCCCCHHHHHHHHHhccc
Q psy17183         69 ISKTYGCYLSSAGHSLRAYYIIDKRGYL-RSMNVSDIQVGRNLKEILRQVEAFQL  122 (145)
Q Consensus        69 va~~yg~~~~~~g~~~p~tfIID~dG~I-~~~~~~~~~~~~~~~ell~~i~~l~~  122 (145)
                      +++.|++.      ..|+.+++++.|++ ...+.|.    ++.+++++.|++...
T Consensus       417 ~~~~~~v~------~~Pt~~~~~~~~~~~~~~~~G~----~~~~~l~~~l~~~~~  461 (481)
T 3f8u_A          417 VPSPYEVR------GFPTIYFSPANKKLNPKKYEGG----RELSDFISYLQREAT  461 (481)
T ss_dssp             CCTTCCCC------SSSEEEEECTTCTTSCEECCSC----CSHHHHHHHHHHHCS
T ss_pred             hHhhCCCc------ccCEEEEEeCCCeEeeeEeCCC----CCHHHHHHHHHHhcC
Confidence            44557766      36999999888874 3333443    568889988877654

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=84.99  E-value=0.96  Score=34.02  Aligned_cols=49  Identities=14%  Similarity=0.078  Sum_probs=33.2

Q ss_pred             cCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcccc
Q psy17183         64 DSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLV  123 (145)
Q Consensus        64 D~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~  123 (145)
                      |.+.++++.||+.      ..|+.|+.|.+|++ ....|..    +.+++.+.|++...+
T Consensus       186 ~~~~~l~~~~gv~------gtPt~vi~~~~G~~-~~~~G~~----~~~~L~~~l~~~~~~  234 (241)
T 1v58_A          186 SDNEKLMDDLGAN------VTPAIYYMSKENTL-QQAVGLP----DQKTLNIIMGNKLQH  234 (241)
T ss_dssp             HHHHHHHHHHTCC------SSCEEEEEETTTEE-EEEESSC----CHHHHHHHTTC----
T ss_pred             HHHHHHHHHcCCC------CCCEEEEECCCCCE-EEecCCC----CHHHHHHHHHHHHHh
Confidence            4466778899987      36999999989976 3445543    467888888776644

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=84.51  E-value=1.8  Score=31.76  Aligned_cols=47  Identities=17%  Similarity=0.091  Sum_probs=29.9

Q ss_pred             cEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         60 PLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        60 pllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      +...|.+.++++.||+.      ..|++|+.|  |+.   ..|..    +.+++.+.|++..
T Consensus       164 ~~~v~~~~~l~~~~gV~------gtPt~v~~d--G~~---~~G~~----~~~~l~~~l~~~~  210 (216)
T 1eej_A          164 DVDIADHYALGVQLGVS------GTPAVVLSN--GTL---VPGYQ----PPKEMKEFLDEHQ  210 (216)
T ss_dssp             SCCHHHHHHHHHHHTCC------SSSEEECTT--SCE---EESCC----CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCC------ccCEEEEcC--CeE---ecCCC----CHHHHHHHHHHhh
Confidence            34456678899999988      369886544  542   34442    3567777666543

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=84.35  E-value=4.5  Score=23.68  Aligned_cols=38  Identities=18%  Similarity=0.199  Sum_probs=24.8

Q ss_pred             chHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHH
Q psy17183         66 THAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQV  117 (145)
Q Consensus        66 ~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i  117 (145)
                      +.++++.||+.      ..|++++   +|+++..  |..   .+.+++.+.|
T Consensus        39 ~~~~~~~~~v~------~~Pt~~~---~G~~~~~--G~~---~~~~~l~~~l   76 (77)
T 1ilo_A           39 EMDQILEAGLT------ALPGLAV---DGELKIM--GRV---ASKEEIKKIL   76 (77)
T ss_dssp             SHHHHHHHTCS------SSSCEEE---TTEEEEC--SSC---CCHHHHHHHC
T ss_pred             CHHHHHHCCCC------cCCEEEE---CCEEEEc--CCC---CCHHHHHHHh
Confidence            45667778887      3688877   8988755  432   1466666654

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=84.33  E-value=1.8  Score=30.76  Aligned_cols=41  Identities=10%  Similarity=0.243  Sum_probs=23.3

Q ss_pred             CchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         65 STHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        65 ~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .+.+.++.+|+.    |  .|+ ||||  |+.+  ..|.    .+.+++.+.|+.+
T Consensus       138 ~~~~~a~~~gv~----g--tPt-~vin--g~~~--~~g~----~~~~~l~~~i~~~  178 (195)
T 2znm_A          138 KMQKLTEQYRID----S--TPT-VIVG--GKYR--VIFN----NGFDGGVHTIKEL  178 (195)
T ss_dssp             HHHHHHHHTTCC----S--SSE-EEET--TTEE--ECCC----SHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCC----C--CCe-EEEC--CEEE--EcCC----CCHHHHHHHHHHH
Confidence            355667777776    3  688 7775  5532  1222    2356666665554

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=84.29  E-value=3.6  Score=33.51  Aligned_cols=50  Identities=12%  Similarity=0.156  Sum_probs=36.7

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      +=+|...++++.||+.      ..|+.+++ ++|++...+.|.    ++.+++.+.+....
T Consensus        59 vd~~~~~~l~~~~~v~------~~Ptl~~~-~~g~~~~~~~G~----~~~~~l~~~~~~~~  108 (481)
T 3f8u_A           59 VDCTANTNTCNKYGVS------GYPTLKIF-RDGEEAGAYDGP----RTADGIVSHLKKQA  108 (481)
T ss_dssp             EETTTCHHHHHHTTCC------EESEEEEE-ETTEEEEECCSC----SSHHHHHHHHHHHT
T ss_pred             EECCCCHHHHHhcCCC------CCCEEEEE-eCCceeeeecCc----cCHHHHHHHHHhhc
Confidence            4466788999999998      37987777 889776665554    56788888776554

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=84.00  E-value=3.3  Score=28.75  Aligned_cols=41  Identities=10%  Similarity=0.173  Sum_probs=24.7

Q ss_pred             cCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         64 DSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        64 D~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +.+.+.++.+|+.    |  .|+.||   +|+   ...|.    .+.+++.+.|++.
T Consensus       131 ~~~~~~a~~~gv~----g--tPt~~i---~g~---~~~G~----~~~~~l~~~i~~~  171 (175)
T 3gyk_A          131 AQSMALAQKLGFN----G--TPSFVV---EDA---LVPGF----VEQSQLQDAVDRA  171 (175)
T ss_dssp             HHHHHHHHHHTCC----S--SSEEEE---TTE---EECSC----CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCc----c--CCEEEE---CCE---EeeCC----CCHHHHHHHHHHH
Confidence            4456677888877    3  686655   454   23343    2467777777654

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=83.68  E-value=2  Score=32.75  Aligned_cols=49  Identities=14%  Similarity=0.128  Sum_probs=34.4

Q ss_pred             HHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCC-C--CCHHHHHHHHHhccccc
Q psy17183         69 ISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQV-G--RNLKEILRQVEAFQLVD  124 (145)
Q Consensus        69 va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~-~--~~~~ell~~i~~l~~~~  124 (145)
                      ++..|++.      ..|+++|+ ++|+++..++|.... +  ...+++...|.......
T Consensus       177 l~~~~~I~------~~PTll~~-~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g~l~  228 (245)
T 1a0r_P          177 AGDRFSSD------VLPTLLVY-KGGELLSNFISVTEQLAEEFFTGDVESFLNEYGLLP  228 (245)
T ss_dssp             CTTSSCTT------TCSEEEEE-ETTEEEEEETTGGGGSCTTCCHHHHHHHHHTTTCSC
T ss_pred             HHHHCCCC------CCCEEEEE-ECCEEEEEEeCCcccccccccHHHHHHHHHHcCCCC
Confidence            45567766      37998888 599999998887532 2  35677888887765543

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=82.70  E-value=0.26  Score=32.48  Aligned_cols=47  Identities=13%  Similarity=0.245  Sum_probs=31.6

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|...++++.|++.      ..|+.+++ ++|+++....|.     +.+++.+.|+++.
T Consensus        75 ~~~~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~l~~~~  121 (130)
T 1wmj_A           75 VDELKEVAEKYNVE------AMPTFLFI-KDGAEADKVVGA-----RKDDLQNTIVKHV  121 (130)
T ss_dssp             TTTSGGGHHHHTCC------SSCCCCBC-TTTTCCBCCCTT-----CTTTHHHHHHHHT
T ss_pred             ccchHHHHHHcCCC------ccceEEEE-eCCeEEEEEeCC-----CHHHHHHHHHHHH
Confidence            46678899999987      36876555 899987666552     2345555555444

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=82.50  E-value=5.1  Score=33.81  Aligned_cols=57  Identities=9%  Similarity=0.121  Sum_probs=41.7

Q ss_pred             CccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccc
Q psy17183         58 IVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVD  124 (145)
Q Consensus        58 ~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~  124 (145)
                      .++.+.|.+.++++.||+..      .|+.++++++|++....+...    ..+.+-..|++|..+.
T Consensus       186 ~v~~v~~~~~~l~~kfgV~~------~Pslvl~~~nGk~~~~~v~~~----~r~~~~~~l~~l~~~~  242 (519)
T 3t58_A          186 AVRRVLNTESDLVNKFGVTD------FPSCYLLLRNGSVSRVPVLVE----SRSFYTSYLRGLPGLT  242 (519)
T ss_dssp             EEEEEETTCHHHHHHHTCCC------SSEEEEEETTSCEEECCCSSC----SHHHHHHHHTTSTTCC
T ss_pred             eEEEecCchHHHHHHcCCCC------CCeEEEEeCCCceeecccccc----cHHHHHHHHHHccCCC
Confidence            68888899999999999983      699999999999876543321    2244446666665543

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=80.25  E-value=1  Score=32.62  Aligned_cols=66  Identities=14%  Similarity=0.117  Sum_probs=41.7

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEE---------EeecCCCCCCHHHHHHHHHhccccccCC---c
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSM---------NVSDIQVGRNLKEILRQVEAFQLVDSTD---T  128 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~---------~~~~~~~~~~~~ell~~i~~l~~~~~~~---~  128 (145)
                      +=.|...+++..|++.      +.|+.+++ ++|+.+.+         .+|..   .+-+++.+.|+++-.....+   -
T Consensus        79 VDVDe~~e~a~~y~V~------siPT~~fF-k~G~~v~vd~Gtgd~~k~vGa~---~~k~~l~~~ie~~~r~a~~g~~~v  148 (160)
T 2av4_A           79 VDITEVPDFNTMYELY------DPVSVMFF-YRNKHMMIDLGTGNNNKINWPM---NNKQEFIDIVETIFRGARKGRGLV  148 (160)
T ss_dssp             EETTTCCTTTTTTTCC------SSEEEEEE-ETTEEEEEECSSSCCSCBCSCC---CCHHHHHHHHHHHHHHHHTTCSEE
T ss_pred             EECCCCHHHHHHcCCC------CCCEEEEE-ECCEEEEEecCCCCcCeEEeec---CCHHHHHHHHHHHHHHhhcCCeEE
Confidence            3357788899999998      47998777 78888743         23321   13567777776654433233   4


Q ss_pred             ccCCCCCC
Q psy17183        129 QCPVNWTT  136 (145)
Q Consensus       129 ~~p~~w~~  136 (145)
                      .||.++..
T Consensus       149 ~~p~~~~~  156 (160)
T 2av4_A          149 ISPKDYST  156 (160)
T ss_dssp             ECSSCC--
T ss_pred             ECCCccch
Confidence            48888653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	145
d1qmva_	197	c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredox	1e-21
d1uula_	194	c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi	1e-20
d2h01a1	170	c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thio	8e-18
d1zyea1	158	c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22)	2e-17
d1e2ya_	167	c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi	1e-15
d1n8ja_	186	c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC	3e-15
d1xcca_	219	c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoe	1e-14
d1we0a1	166	c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase	3e-14
d2zcta1	237	c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum perni	4e-14
d1prxa_	220	c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sa	4e-14
d1zofa1	170	c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {He	5e-13
d2bmxa1	169	c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase	2e-09
d1psqa_	163	c.47.1.10 (A:) Probable thiol peroxidase PsaD {Str	3e-07
d2a4va1	156	c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's y	9e-07
d1xvwa1	153	c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c	4e-05

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} Length = 197

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (206), Expect = 1e-21
 Identities = 46/121 (38%), Positives = 65/121 (53%), Gaps = 5/121 (4%)

Query: 22  PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG 81
             +++ VSVDS   HLAW  T          + P  I PLL+D T  +S+ YG   +  G
Sbjct: 68  GCEVLGVSVDSQFTHLAWINT----PRKEGGLGPLNI-PLLADVTRRLSEDYGVLKTDEG 122

Query: 82  HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
            + R  +IID +G LR + V+D+ VGR++ E LR V+AFQ  D     CP  W  G  ++
Sbjct: 123 IAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTI 182

Query: 142 K 142
           K
Sbjct: 183 K 183

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} Length = 194

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 81.4 bits (200), Expect = 1e-20
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 7/142 (4%)

Query: 1   MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVP 60
           +     C        +       +++A S+DS  +HLAW      +   +        +P
Sbjct: 48  VCPTEICQFSDR--VKEFSDIGCEVLACSMDSEYSHLAW-----TSIERKRGGLGQMNIP 100

Query: 61  LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF 120
           +L+D T  I K+YG      G + R  +IID +  LR + V+D+ VGR++ E LR V+AF
Sbjct: 101 ILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF 160

Query: 121 QLVDSTDTQCPVNWTTGQPSVK 142
           Q V+     CP NW  G  ++K
Sbjct: 161 QFVEKHGEVCPANWKPGDKTMK 182

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

 Score = 73.4 bits (179), Expect = 8e-18
 Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 6/114 (5%)

Query: 24  QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
           +++  SVDS   HLAW KT      ++  I   K   L+SD + +I+++Y     +   +
Sbjct: 63  ELLGCSVDSKFTHLAWKKT----PLSQGGIGNIKH-TLISDISKSIARSYDVL-FNESVA 116

Query: 84  LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTG 137
           LRA+ +IDK+G ++ + V+++ +GR++ EILR ++A Q  +     CP NW  G
Sbjct: 117 LRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYGDVCPANWQKG 170

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.8 bits (175), Expect = 2e-17
 Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 5/103 (4%)

Query: 23  FQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGH 82
            +++AVSVDSH +HLAW  T       ++       + LLSD T  IS+ YG  L   G 
Sbjct: 61  CEVVAVSVDSHFSHLAWINT-----PRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGL 115

Query: 83  SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDS 125
           +LR  +IID  G ++ ++V+D+ VGR+++E LR V+AFQ V++
Sbjct: 116 ALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVEA 158

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

 Score = 67.2 bits (163), Expect = 1e-15
 Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 5/103 (4%)

Query: 22  PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG 81
             ++I+ S DS  +HL W      +   +        +P+L+D T AI++ YG     +G
Sbjct: 67  NTEVISCSCDSEYSHLQW-----TSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSG 121

Query: 82  HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVD 124
            + R  +IID  G LR + ++D+ +GRN++E++R VEA Q V+
Sbjct: 122 VAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQFVE 164

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

 Score = 66.8 bits (162), Expect = 3e-15
 Identities = 28/125 (22%), Positives = 62/125 (49%), Gaps = 9/125 (7%)

Query: 22  PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG 81
              + +VS D+H  H AW  +    +  +          ++ D T A+++ +       G
Sbjct: 64  GVDVYSVSTDTHFTHKAWHSSSETIAKIK--------YAMIGDPTGALTRNFDNMREDEG 115

Query: 82  HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDS-TDTQCPVNWTTGQPS 140
            + RA +++D +G ++++ V+   +GR+  ++LR+++A Q V +     CP  W  G+ +
Sbjct: 116 LADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEAT 175

Query: 141 VKVAL 145
           +  +L
Sbjct: 176 LAPSL 180

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 219

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score = 65.6 bits (159), Expect = 1e-14
 Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 13/147 (8%)

Query: 1   MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVP 60
           + T    ++ K+   E  +    ++I  S +S  +H  W +                 +P
Sbjct: 45  VCTTELAELGKM--HEDFLKLNCKLIGFSCNSKESHDKWIED-----IKYYGKLNKWEIP 97

Query: 61  LLSDSTHAISKTYGC------YLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEIL 114
           ++ D +  ++            ++    + R  + I     +++  +     GRN  EIL
Sbjct: 98  IVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEIL 157

Query: 115 RQVEAFQLVDSTDTQCPVNWTTGQPSV 141
           R +++ QL  +T    PVNW  G    
Sbjct: 158 RVLKSLQLTYTTPVATPVNWNEGDKCC 184

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

 Score = 63.8 bits (154), Expect = 3e-14
 Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 8/105 (7%)

Query: 22  PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG 81
             ++ +VS D+H  H AW +   A  S            ++ D +  IS+ +       G
Sbjct: 65  GVEVYSVSTDTHFVHKAWHENSPAVGSIE--------YIMIGDPSQTISRQFDVLNEETG 116

Query: 82  HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDST 126
            + R  +IID  G ++++ ++   +GR+   ++ +V+A Q V   
Sbjct: 117 LADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYVREN 161

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} Length = 237

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

 Score = 64.8 bits (157), Expect = 4e-14
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 7/117 (5%)

Query: 23  FQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGH 82
             +I +SVDS  +H+ W +           I      P+++D    +++  G   + +  
Sbjct: 64  VDLIGLSVDSVFSHIKWKEW------IERHIGVRIPFPIIADPQGTVARRLGLLHAESAT 117

Query: 83  -SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQ 138
            ++R  +I+D RG +R+M    +++GR + EILR V+A +L DS     P +W   +
Sbjct: 118 HTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNNE 174

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 220

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (156), Expect = 4e-14
 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 8/128 (6%)

Query: 22  PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG 81
             ++IA+S+DS   HLAW+K + A +S           P++ D    ++   G    +  
Sbjct: 61  NVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLP--FPIIDDRNRELAILLGMLDPAEK 118

Query: 82  ------HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWT 135
                  + R  ++      L+   +     GRN  EILR V + QL        PV+W 
Sbjct: 119 DEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWK 178

Query: 136 TGQPSVKV 143
            G   + +
Sbjct: 179 DGDSVMVL 186

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

 Score = 60.6 bits (146), Expect = 5e-13
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 60  PLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119
           P+++D T +IS+ Y   L     +LR  ++IDK   +R   ++D+ +GRN  E+LR V+A
Sbjct: 100 PMVADITKSISRDYDV-LFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDA 158

Query: 120 FQLVDSTDTQCP 131
               +     CP
Sbjct: 159 LLHFEEHGEVCP 170

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} Length = 169

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 51.2 bits (121), Expect = 2e-09
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 59  VPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE 118
            P+LSD    +S+  G   ++ G + R  +I+D    ++ ++ +   VGRN+ E+LR ++
Sbjct: 107 FPMLSDIKRELSQAAGVL-NADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLD 165

Query: 119 AFQ 121
           A Q
Sbjct: 166 ALQ 168

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 45.3 bits (106), Expect = 3e-07
 Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 11/114 (9%)

Query: 7   CDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDST 66
               +   +E+  +    ++ VS+D   A   W            A      + L     
Sbjct: 59  STQTRRFNEELAGLDNTVVLTVSMDLPFAQKRWCG----------AEGLDNAIMLSDYFD 108

Query: 67  HAISKTYGCYLSSAGHSLRAYYIIDKRGYLR-SMNVSDIQVGRNLKEILRQVEA 119
           H+  + Y   ++      RA +++D    +R    V +I    N +  +   +A
Sbjct: 109 HSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA 162

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (102), Expect = 9e-07
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 63  SDSTHAISKTYGCYLSSAGHSLRAYYII-DKRGYLRSMNVS-DIQVGRNLKEILRQVEAF 120
           SD         G   +    S+R+++I  D +   + + +S ++ V    KE+L   E F
Sbjct: 95  SDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKRVKISPEVSVNDAKKEVLEVAEKF 154

Query: 121 Q 121
           +
Sbjct: 155 K 155

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 153

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.3 bits (90), Expect = 4e-05
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 60  PLLSDST--HAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQV 117
           PLLSD     A+S+ YG +   AG + R  +++D+ G +R   +      R+ +     +
Sbjct: 89  PLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDAL 148

Query: 118 EA 119
            A
Sbjct: 149 AA 150

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	100.0
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	100.0
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	100.0
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	100.0
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	100.0
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	100.0
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.97
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	99.96
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	99.95
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	99.94
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.92
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	99.91
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.86
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.81
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.78
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	99.72
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.71
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	99.69
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	99.66
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	99.66
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.65
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	99.63
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	99.58
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.57
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.55
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	99.52
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	99.51
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.47
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.45
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.44
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.32
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.29
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.99
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	98.93
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	98.91
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	98.63
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.11
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	98.05
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.79
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	95.86
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	95.45
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	95.39
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	95.3
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	95.09
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	94.93
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	94.73
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	94.64
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	94.54
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	94.43
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	94.34
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	92.95
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	92.61
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	92.23
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	92.17
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	91.84
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	91.68
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	91.14
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	90.85
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	90.74
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	90.32
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	90.21
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	90.01
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	88.69
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	87.59
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	85.48

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=100.00  E-value=5.4e-38  Score=241.71  Aligned_cols=136  Identities=20%  Similarity=0.324  Sum_probs=124.6

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC-
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA-   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~-   80 (145)
                      ||.|++.|++++  ++|+++|++|+|||+|++++|++|++++++.+  |..++   +||||+|.+++++++||+..+.. 
T Consensus        46 CttEl~~f~~~~--~eF~~~~~~vigiS~Ds~~sh~~w~~~~~~~~--~~~~l---~fpllsD~~~~va~~ygv~~~~~~  118 (219)
T d1xcca_          46 CTTELAELGKMH--EDFLKLNCKLIGFSCNSKESHDKWIEDIKYYG--KLNKW---EIPIVCDESRELANKLKIMDEQEK  118 (219)
T ss_dssp             HHHHHHHHHHTH--HHHHTTTEEEEEEESSCHHHHHHHHHHHHHHH--TCSCC---CCCEEECTTSHHHHHHTCEEEEEE
T ss_pred             cchhHHHHHHhh--hhhcccceEEEeecCccHhHHhHHhhhhHhhc--ccCCC---CcccccccccHHHHHhCCcccccc
Confidence            999999999999  79999999999999999999999999876654  44458   99999999999999999986532 


Q ss_pred             -----CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         81 -----GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        81 -----g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                           +.+.|++||||++|+|++.++++..++|+++|+|+.|++||++++|+.+||+||++|+++++|+
T Consensus       119 ~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~l~aLQ~~~~~~~~~PanW~~G~~~~~~p  187 (219)
T d1xcca_         119 DITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQLTYTTPVATPVNWNEGDKCCVIP  187 (219)
T ss_dssp             CTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHSSEEBCTTCCTTSCEEECT
T ss_pred             cCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHHHHHHHHHHHHhCCCCcCCCCCCCCceeeCC
Confidence                 2478999999999999999999999999999999999999999999999999999999998853

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=2.9e-37  Score=233.53  Aligned_cols=136  Identities=33%  Similarity=0.574  Sum_probs=126.9

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG   81 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g   81 (145)
                      |+.|++.|++++  ++|+.+|++|+|||.|+.+++++|.+..++..  ++..+   +||+|+|.+++++++||++....|
T Consensus        49 C~~E~~~f~~~~--~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~--~~~~l---~fpllsD~~~~v~~~ygv~~~~~~  121 (194)
T d1uula_          49 CPTEICQFSDRV--KEFSDIGCEVLACSMDSEYSHLAWTSIERKRG--GLGQM---NIPILADKTKCIMKSYGVLKEEDG  121 (194)
T ss_dssp             HHHHHHHHHHTH--HHHHTTTEEEEEEESSCHHHHHHHHHSCGGGT--CCCSC---SSCEEECTTCHHHHHHTCEETTTT
T ss_pred             chhhhhHHHhhh--hhhccCceEEEEEecCchhhhhhhhhhhhhhc--cccCC---CcceeeCCcchHHHHcCCeeccCC
Confidence            999999999999  69999999999999999999999998755444  44448   999999999999999999887778


Q ss_pred             CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        82 ~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                      ++.|+|||||++|+|+++++++.+.+|+.+|+|+.|++||+++++++.||+||++|+++|+|.
T Consensus       122 ~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~alQ~~~~~~~~cp~~W~~g~~~~~p~  184 (194)
T d1uula_         122 VAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQFVEKHGEVCPANWKPGDKTMKPD  184 (194)
T ss_dssp             EECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHHSCBBCTTCCTTSCCBCSS
T ss_pred             ceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHhhhHhhcCCCcCCCCCCCCccccCC
Confidence            899999999999999999999999999999999999999999999999999999999999975

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=6.1e-37  Score=230.55  Aligned_cols=134  Identities=25%  Similarity=0.473  Sum_probs=124.5

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG   81 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g   81 (145)
                      ||.|+|.|++.+  ++|+++|++|+|||+|+++++++|+++   ..  ++.++   +||+|+|++++++++||+..+..|
T Consensus        46 C~~e~~~f~~~~--~~f~~~~~~v~gIS~Ds~~sh~~f~~~---~~--~~~~~---~fpllsD~~~~v~~~yGv~~~~~g  115 (186)
T d1n8ja_          46 SPTELGDVADHY--EELQKLGVDVYSVSTDTHFTHKAWHSS---SE--TIAKI---KYAMIGDPTGALTRNFDNMREDEG  115 (186)
T ss_dssp             HHHHHHHHHHHH--HHHHHTTEEEEEEESSCHHHHHHHHHH---CT--TGGGC---CSEEEECTTSHHHHHTTCEETTTT
T ss_pred             cHHHHHHHHHhh--hhcccccEEEEeccccCHHHHHHHhcc---cc--ccccc---cccccccHHHHHHHHhCCCcccCC
Confidence            999999999999  699999999999999999999999987   32  22248   999999999999999999987778


Q ss_pred             CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccC-CcccCCCCCCCCCccccCC
Q psy17183         82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDST-DTQCPVNWTTGQPSVKVAL  145 (145)
Q Consensus        82 ~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~-~~~~p~~w~~~~~~~~~~~  145 (145)
                      .+.|++||||++|+|+++++++...+|+++|+|+.|++||++++| +++||+||++|+++|+|.+
T Consensus       116 ~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lkaLQ~~~~~~g~~~p~~W~~g~~~~~~~~  180 (186)
T d1n8ja_         116 LADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAPSL  180 (186)
T ss_dssp             EECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHSTTCBBCTTCCTTSCCBCCSS
T ss_pred             cceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHHHHHHHhcCCeEeCCCCCCCCceeccCc
Confidence            889999999999999999999999999999999999999999999 6999999999999999864

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-37  Score=232.07  Aligned_cols=136  Identities=33%  Similarity=0.550  Sum_probs=127.4

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG   81 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g   81 (145)
                      ||.|++.|++++  ++|+++|++|+|||.|+++++++|+++.++..  ++.++   +||+|+|++++++++||+.....|
T Consensus        50 C~~e~~~~~~~~--~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~--~~~~~---~fpll~D~~~~va~~ygv~~~~~g  122 (197)
T d1qmva_          50 CPTEIIAFSNRA--EDFRKLGCEVLGVSVDSQFTHLAWINTPRKEG--GLGPL---NIPLLADVTRRLSEDYGVLKTDEG  122 (197)
T ss_dssp             HHHHHHHHHHTH--HHHHTTTEEEEEEESSCHHHHHHHHTSCGGGT--CCCSC---SSCEEECTTCHHHHHTTCEETTTT
T ss_pred             chhhhHHHHHHH--HHhccCCcEEEEEecCCHHHHHhhhcchhhhc--CcCCC---ccceEeccchHHHHHhCCCcccCC
Confidence            999999999999  69999999999999999999999998765544  44458   999999999999999999987778


Q ss_pred             CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        82 ~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                      ++.|++||||++|+|++.+.++.+.+|+.+|+++.|++||.+++|+++||+||++|+++|+|+
T Consensus       123 ~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~alq~~~~~g~~cp~~W~pG~~~~~p~  185 (197)
T d1qmva_         123 IAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTIKPN  185 (197)
T ss_dssp             EECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHHCCBBCTTCCTTSCCBCSS
T ss_pred             eeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHhhccccccCcCcCCCCCCCCccccCC
Confidence            899999999999999999999999999999999999999999999999999999999999986

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-35  Score=227.54  Aligned_cols=138  Identities=24%  Similarity=0.361  Sum_probs=123.8

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcC-CCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATS-SNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      ||.|++.|++.+  ++|+++|++|+|||+|+.++|.+|.+.++.+. ..+..++   +||+++|.+++++++||+..+..
T Consensus        43 C~~El~~~~~~~--~~f~~~g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l---~fpllsD~~~~va~~ygv~~~~~  117 (220)
T d1prxa_          43 CTTELGRAAKLA--PEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKL---PFPIIDDRNRELAILLGMLDPAE  117 (220)
T ss_dssp             HHHHHHHHHHHH--HHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCC---SSCEEECTTCHHHHHTTSSCSCT
T ss_pred             chhhHHHHHHHH--HHhhcccceeeccccccccchhhhhhhhhhccccccccCc---ccccccCcccHHHHHhCCccccc
Confidence            999999999999  79999999999999999999999988764322 0122348   99999999999999999986542


Q ss_pred             ------CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183         81 ------GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA  144 (145)
Q Consensus        81 ------g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~  144 (145)
                            +.+.|++||||++|+|++.++++...+|+++|+|++|++||.+++|+.+||+||++|+++|+|+
T Consensus       118 ~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiLr~l~alq~~~~~~~~~PanW~pGd~~~~~p  187 (220)
T d1prxa_         118 KDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLP  187 (220)
T ss_dssp             TCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHHHHHHHHCEEBCTTCCTTSCEEECT
T ss_pred             cccccceeeeEEEEEEcCccceeEEEEecCCcccchHHHHHHHHHHhhhhcCCcCcCCCCCCCCceecCC
Confidence                  3578999999999999999999999999999999999999999999999999999999999964

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=1.6e-34  Score=224.57  Aligned_cols=135  Identities=25%  Similarity=0.438  Sum_probs=120.8

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG   81 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g   81 (145)
                      ||+|++.|++++  ++|+++|++|||||+|+.+++++|++.++...  + ..+   +||+++|++++++++||+.....+
T Consensus        45 CttEl~~~~~~~--~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~--~-~~l---~fpllsD~~~~vak~yGv~~~~~~  116 (237)
T d2zcta1          45 CTTEFVSFARRY--EDFQRLGVDLIGLSVDSVFSHIKWKEWIERHI--G-VRI---PFPIIADPQGTVARRLGLLHAESA  116 (237)
T ss_dssp             HHHHHHHHHHTH--HHHHHTTEEEEEEESSCHHHHHHHHHHHHHHH--C-CCC---CSCEEECGGGHHHHHTTCC----C
T ss_pred             CHHHHHHHHhhh--hhhccCCcceeeccCCcHHHHHHHhhhhhhhc--c-ccc---ccccccCcchHHHHHcCCcccccc
Confidence            999999999999  79999999999999999999999998765443  2 238   999999999999999999764433


Q ss_pred             -CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCC----CCCccccC
Q psy17183         82 -HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTT----GQPSVKVA  144 (145)
Q Consensus        82 -~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~----~~~~~~~~  144 (145)
                       .+.|++||||++|+|+++.+++.+.+|+++|+|++|++||.+++|+.+||+||++    |+++|+|+
T Consensus       117 ~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aLQ~~~~~~~~~Pa~W~~~~~~g~~~~~~~  184 (237)
T d2zcta1         117 THTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNNEIIGEGLIVPP  184 (237)
T ss_dssp             CTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHHHHHHHHTCBBCTTTTSBTTTBTCEECCC
T ss_pred             ccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHHhhhccCCcCCcCCCCCCCCCCCCEEeCC
Confidence             5789999999999999999999999999999999999999999999999999998    99999974

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.97  E-value=2.2e-32  Score=202.22  Aligned_cols=129  Identities=29%  Similarity=0.520  Sum_probs=115.6

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      -||.|+|.|++++  ++|++.|++|||||.|+++++++|+++.....  ....+   +||+|+|.+++++++||+..+ .
T Consensus        42 ~Ct~e~~~f~~~~--~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~--~~~~~---~f~llsD~~~~~~~~ygv~~~-~  113 (170)
T d2h01a1          42 VCPSEIIALDKAL--DSFKERNVELLGCSVDSKFTHLAWKKTPLSQG--GIGNI---KHTLISDISKSIARSYDVLFN-E  113 (170)
T ss_dssp             SCCHHHHHHHHTH--HHHHHTTEEEEEEESSCHHHHHHHHTSCGGGT--CCCSC---SSEEEECTTSHHHHHTTCEET-T
T ss_pred             ccchhhHHHhhhh--hhhhcCCeeEecccCCcHHHHHhHhhhhhhhc--ccccc---CCceeEcCccHHHHHhCCccc-c
Confidence            3999999999999  69999999999999999999999988643332  22236   899999999999999999753 4


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCC
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTG  137 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~  137 (145)
                      +.+.|++||||++|+|++.++++.+.+|+++|++++|++||..++|+.+||+||++|
T Consensus       114 ~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~lq~~~~~~~~~~~~w~~g  170 (170)
T d2h01a1         114 SVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYGDVCPANWQKG  170 (170)
T ss_dssp             TEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHHHHHHHCCCCCSSCCCC
T ss_pred             ccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCccCCCCCCC
Confidence            568899999999999999999888889999999999999999999999999999987

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=99.96  E-value=2.8e-29  Score=185.30  Aligned_cols=123  Identities=28%  Similarity=0.455  Sum_probs=111.0

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .||.|+|.|++.+  ++|+++|++|+|||.|+.+++++|++..+...  .+..+   +||+++|++++++++||+..+ .
T Consensus        48 ~C~~e~~~~~~~~--~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~--~~~~~---~~~~l~D~~~~v~~~ygv~~~-~  119 (170)
T d1zofa1          48 VCPTEIIAFDKRV--KDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKG--GIGQV---SFPMVADITKSISRDYDVLFE-E  119 (170)
T ss_dssp             SCCTHHHHHHHTH--HHHHHTTEEEEEEESSCHHHHHHHHTSCGGGT--CCCCC---SSCEEECTTSHHHHHTTCEET-T
T ss_pred             cCHHHHHHHHHhH--HhhccCCeeEecccccchhhHHHHHhhhhhcc--cccCc---ccccccccccHHHHHcCCCcc-c
Confidence            4999999999999  69999999999999999999999988643332  33347   999999999999999999764 4


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccC
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCP  131 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p  131 (145)
                      |++.|++||||++|+|++.++++.+.+++++|+|++|++||++++|+++||
T Consensus       120 ~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~aLq~~~~~~~~~p  170 (170)
T d1zofa1         120 AIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCP  170 (170)
T ss_dssp             TEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHHHHHSSCCCCC
T ss_pred             cceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHHhhhHHhcCCcCc
Confidence            678999999999999999999998888999999999999999999999998

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=99.95  E-value=3e-28  Score=179.25  Aligned_cols=119  Identities=24%  Similarity=0.374  Sum_probs=109.2

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHh-hcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLT-ATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS   79 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~   79 (145)
                      .|+.|+|.|++++  ++|+++|++|||||+|+++++++|+++.. +++      +   +||+++|++++++++||+....
T Consensus        46 ~C~~e~~~~~~~~--~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~~------~---~fpll~D~~~~v~~~ygv~~~~  114 (166)
T d1we0a1          46 VCPTELEDVQKEY--AELKKLGVEVYSVSTDTHFVHKAWHENSPAVGS------I---EYIMIGDPSQTISRQFDVLNEE  114 (166)
T ss_dssp             SCTHHHHHHHHHH--HHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHT------C---CSEEEECTTCHHHHHTTCEETT
T ss_pred             HHHHHHHHHHHHH--HhhcccceEEEecccccHHHHHHHhhhhhhhcc------c---ccccccCcccHHHHHhCCCccc
Confidence            4999999999999  79999999999999999999999987632 233      8   9999999999999999998777


Q ss_pred             CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccC-Cccc
Q psy17183         80 AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDST-DTQC  130 (145)
Q Consensus        80 ~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~-~~~~  130 (145)
                      .|++.|++||||++|+|++.++++.+.+|+++|+++.|++||++++| ++.|
T Consensus       115 ~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lkal~~~~~~~g~~c  166 (166)
T d1we0a1         115 TGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYVRENPGEVC  166 (166)
T ss_dssp             TTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHHHHHTSTTCCC
T ss_pred             cCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHHhcchhhhcCCCCC
Confidence            78889999999999999999999988899999999999999999999 5888

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=5.1e-27  Score=171.10  Aligned_cols=116  Identities=36%  Similarity=0.552  Sum_probs=104.5

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG   81 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g   81 (145)
                      ||.|+|.|++++  ++|.+.|++|+|||.|+++++++|++......  ...++   +||+|+|+.+++++.||+.....|
T Consensus        42 C~~e~~~~~~~~--~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~--~~~~~---~f~llsD~~~~~~~~ygv~~~~~g  114 (158)
T d1zyea1          42 CPTEIIAFSDKA--SEFHDVNCEVVAVSVDSHFSHLAWINTPRKNG--GLGHM---NIALLSDLTKQISRDYGVLLEGPG  114 (158)
T ss_dssp             SHHHHHHHHHHH--HHHHHTTEEEEEEESSCHHHHHHHHTSCGGGT--CCCSC---SSEEEECTTSHHHHHTTCEETTTT
T ss_pred             cccchhhHHHhH--HHhhcCCceEEeccCcCHHHHHHHHhhhHhhc--ccccc---ccccccccccHHHHHHHhccccCC
Confidence            999999999999  69999999999999999999999998743321  12238   999999999999999999877678


Q ss_pred             CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccc
Q psy17183         82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVD  124 (145)
Q Consensus        82 ~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~  124 (145)
                      ++.|+|||||++|+|++.++++.+.+++.+|+|+.|++||+++
T Consensus       115 ~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lkalq~~~  157 (158)
T d1zyea1         115 LALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVE  157 (158)
T ss_dssp             EECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHTT
T ss_pred             ccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhhh
Confidence            8899999999999999999999888999999999999999876

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.92  E-value=2.3e-25  Score=162.85  Aligned_cols=120  Identities=29%  Similarity=0.483  Sum_probs=107.5

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|+.|+|.|++.+  ++|+++|++|+|||.|+++++.+|....+...  ....+   +||+++|.++++++.||+.....
T Consensus        48 ~C~~e~~~l~~~~--~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~--~~~~~---~~~~l~d~~~~~~~~y~v~~~~~  120 (167)
T d1e2ya_          48 VCPTEIIQFSDDA--KRFAEINTEVISCSCDSEYSHLQWTSVDRKKG--GLGPM---AIPMLADKTKAIARAYGVLDEDS  120 (167)
T ss_dssp             SCCHHHHHHHHTH--HHHHTTTEEEEEEESSCHHHHHHHHHSCGGGT--CCCCC---SSCEEECTTCHHHHHHTCEETTT
T ss_pred             ccchhhHHHHHHH--HHhhcCceEEEeecCCcHHhHHHHHhhHHHhc--ccccc---cccccccchhHHHHHcCCCcccC
Confidence            3999999999999  69999999999999999999999988644332  22236   89999999999999999987777


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCC
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTD  127 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~  127 (145)
                      |.+.|++||||++|+|++.++++.+.+++.+|+|++|++||++++|+
T Consensus       121 g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~alq~~~~~g  167 (167)
T d1e2ya_         121 GVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQFVEEHG  167 (167)
T ss_dssp             TEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHCC
T ss_pred             CCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHHhHHHhcC
Confidence            88899999999999999999998888899999999999999999885

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.91  E-value=3.5e-24  Score=156.72  Aligned_cols=110  Identities=27%  Similarity=0.394  Sum_probs=98.5

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|+.|+|.|++++  ++|+++|++|++||.|+++++.+|.+.   +.  +...+   +||+|+|.+++++++||+... .
T Consensus        59 ~C~~~~~~~~~~~--~~~~~~g~~vv~is~d~~~~~~~~~~~---~~--~~~~~---~f~ll~D~~~~v~~~ygv~~~-~  127 (169)
T d2bmxa1          59 VCPTEIAAFSKLN--DEFEDRDAQILGVSIDSEFAHFQWRAQ---HN--DLKTL---PFPMLSDIKRELSQAAGVLNA-D  127 (169)
T ss_dssp             CCHHHHHHHHHTH--HHHHTTTEEEEEEESSCHHHHHHHHHH---CT--TGGGC---CSCEEECTTSHHHHHHTCBCT-T
T ss_pred             ccccccccccccc--ccccccCcceeeccccchhhhhhhccc---cc--ccccc---eEEEEeccHHHHHHHcCCCcc-C
Confidence            4999999999999  699999999999999999999999887   32  11237   999999999999999999743 4


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      +.+.|++||||++|+|++.++++.+.+++++|+++.|++||
T Consensus       128 ~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~alq  168 (169)
T d2bmxa1         128 GVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ  168 (169)
T ss_dssp             SSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CccceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHHhc
Confidence            66889999999999999999988888899999999999997

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.86  E-value=4.2e-21  Score=137.51  Aligned_cols=106  Identities=21%  Similarity=0.284  Sum_probs=96.5

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC--chHHHHHhCCCccC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS--THAISKTYGCYLSS   79 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~--~~~va~~yg~~~~~   79 (145)
                      |+.|++.|++++  ++|+..|++|++||.|+++.+++|++.   ++      +   +||+++|.  +++++++||+....
T Consensus        45 C~~e~~~l~~~~--~~~~~~~~~vi~vs~d~~~~~~~~~~~---~~------~---~~~~l~~~~~~~~~~~~ygv~~~~  110 (153)
T d1xvwa1          45 CQGELDQLRDHL--PEFENDDSAALAISVGPPPTHKIWATQ---SG------F---TFPLLSDFWPHGAVSQAYGVFNEQ  110 (153)
T ss_dssp             HHHHHHHHHHTG--GGTSSSSEEEEEEESCCHHHHHHHHHH---HT------C---CSCEEECTTTTTHHHHHTTCEETT
T ss_pred             hhhhhhhhhhhh--hhhcccccccccccchhhhHHHHHhhh---hc------c---ceeEEecccccchhHHHhhhhhhc
Confidence            999999999999  699999999999999999999999987   76      8   99999885  78999999998776


Q ss_pred             CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         80 AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        80 ~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|++.|++||||++|+|+|.++++....++..++.++|++|+
T Consensus       111 ~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~aL~  152 (153)
T d1xvwa1         111 AGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT  152 (153)
T ss_dssp             TTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHTC
T ss_pred             cCceeeeEEEECCCCEEEEEEEeCCCcccCHHHHHHHHHhhc
Confidence            788899999999999999999877667788899999998875

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.81  E-value=6e-20  Score=131.80  Aligned_cols=106  Identities=23%  Similarity=0.290  Sum_probs=93.9

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC-
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA-   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~-   80 (145)
                      |+.|++.|++++  ++|++.|+.|++||.|+++.+++|.+.   ++      +   +||+++|.+++++++||+..... 
T Consensus        46 C~~~~~~l~~~~--~~~~~~~~~vv~is~d~~~~~~~~~~~---~~------~---~~~~l~D~~~~~~~~~gv~~~~~~  111 (160)
T d2cx4a1          46 CTKELCTFRDKM--AQLEKANAEVLAISVDSPWCLKKFKDE---NR------L---AFNLLSDYNREVIKLYNVYHEDLK  111 (160)
T ss_dssp             HHHHHHHHHHTC--TTTSTTCCEEEEEESSCHHHHHHHHHH---HT------C---SSEEEECTTSHHHHHTTCEEEEET
T ss_pred             hhhhhhhhhccc--ccccccccccccccccchhhhhhhccc---ce------e---eEEEeecCCcchHHHcCccccccc
Confidence            999999999999  699999999999999999999999886   66      8   99999999999999999975321 


Q ss_pred             ---CCcceEEEEECCCCcEEEEEeecCCCCC-CHHHHHHHHHhcc
Q psy17183         81 ---GHSLRAYYIIDKRGYLRSMNVSDIQVGR-NLKEILRQVEAFQ  121 (145)
Q Consensus        81 ---g~~~p~tfIID~dG~I~~~~~~~~~~~~-~~~ell~~i~~l~  121 (145)
                         +.+.|++||||++|+|++.++++.+.++ +.+++++.++++.
T Consensus       112 ~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~  156 (160)
T d2cx4a1         112 GLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA  156 (160)
T ss_dssp             TEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHH
T ss_pred             cccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHc
Confidence               2367999999999999999998766544 7999999998875

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=4.6e-19  Score=127.99  Aligned_cols=105  Identities=21%  Similarity=0.180  Sum_probs=86.2

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      .|+.|++.|++.|  ++|++ ++.++|||.|+++.+++|+++   ++      +   +||+|+|++++++++||+.....
T Consensus        48 ~C~~~~~~~~~~~--~~~~~-~~~~~~is~d~~~~~~~f~~~---~~------l---~f~~L~D~~~~v~~~ygv~~~~~  112 (156)
T d2a4va1          48 GSTRQASGFRDNY--QELKE-YAAVFGLSADSVTSQKKFQSK---QN------L---PYHLLSDPKREFIGLLGAKKTPL  112 (156)
T ss_dssp             HHHHHHHHHHHHH--HHHTT-TCEEEEEESCCHHHHHHHHHH---HT------C---SSEEEECTTCHHHHHHTCBSSSS
T ss_pred             chhhhhHHHHHHH--HHHhh-ccceeeeccchhhhHHhhhcc---cC------c---cceeccchHHHHHHHcCCCcccc
Confidence            3999999999999  68975 566899999999999999997   76      9   99999999999999999975433


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCC---CCCHHHHHHHHHhcc
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQV---GRNLKEILRQVEAFQ  121 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~---~~~~~ell~~i~~l~  121 (145)
                      +...|++||+ .||+|++.+++..+.   ..+.++++++|++|+
T Consensus       113 ~~~~r~~~i~-~dg~i~~~~~~~~~~~~~~~~~~evl~~lk~l~  155 (156)
T d2a4va1         113 SGSIRSHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVAEKFK  155 (156)
T ss_dssp             SCBCCEEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCeeEEEEEE-ECCeEEEEEEEeCCCCCcchHHHHHHHHHHHhc
Confidence            3345666666 799999999875432   224678999998887

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.72  E-value=5.9e-17  Score=117.41  Aligned_cols=104  Identities=17%  Similarity=0.208  Sum_probs=85.9

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEec-CchHHHHHhCCCccCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSD-STHAISKTYGCYLSSA   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD-~~~~va~~yg~~~~~~   80 (145)
                      |+.|++.|++.+  .+|+  |+.+++||.|+++.+++|...   ++      ..  .+++++| .++.+++.||+.....
T Consensus        58 C~~~~~~l~~~~--~~~~--~~~vv~Is~d~~~~~~~~~~~---~~------~~--~~~~~~~~~~~~~~~~ygv~~~~~  122 (163)
T d1psqa_          58 CSTQTRRFNEEL--AGLD--NTVVLTVSMDLPFAQKRWCGA---EG------LD--NAIMLSDYFDHSFGRDYALLINEW  122 (163)
T ss_dssp             HHHHHHHHHHHT--TTCT--TEEEEEEESSCHHHHHHHHHH---HT------CT--TSEEEECTTTCHHHHHHTCBCTTT
T ss_pred             chhhHHHHHHHH--Hhhc--ccceEEEEeccHHHHHHHHHH---cC------Cc--ceeeeccccchhHHHhheeecccc
Confidence            999999999988  5775  899999999999999999886   54      30  3344444 5899999999987666


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCC-CCCCHHHHHHHHHhc
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQ-VGRNLKEILRQVEAF  120 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~-~~~~~~ell~~i~~l  120 (145)
                      +.+.|++||||++|+|+|.++.+.. ..+++++++++|++|
T Consensus       123 ~~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~il~alk~L  163 (163)
T d1psqa_         123 HLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKAL  163 (163)
T ss_dssp             CSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHHC
T ss_pred             cceeEEEEEECCCCEEEEEEEcCCCCCCCCHHHHHHHHhcC
Confidence            7778999999999999999887643 345899999999876

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=7.6e-17  Score=119.56  Aligned_cols=116  Identities=16%  Similarity=0.263  Sum_probs=86.6

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeC--------CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHh
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSV--------DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTY   73 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~--------D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~y   73 (145)
                      |..+++.|.+++  ++|+. ++.+++|+.        ++.+..++|.+.   ++      +   +||++.|.+++++++|
T Consensus        47 C~~~~p~l~~l~--~~y~~-~v~~v~i~snd~~~~~~~~~e~~~~~~~~---~~------~---~~p~l~D~~~~~~~~~  111 (187)
T d2cvba1          47 VKGSIGELVALA--ERYRG-KVAFVGINANDYEKYPEDAPEKMAAFAEE---HG------I---FFPYLLDETQEVAKAY  111 (187)
T ss_dssp             HHTTHHHHHHHH--HHTTT-TEEEEEEECCCTTTCGGGSHHHHHHHHHH---HT------C---CSCEEECSSSHHHHHT
T ss_pred             chhhhhhhhhhh--hhccc-cceeeeeeccccccccccchHHHHHHHHH---hC------C---cceeeechhhhhcccc
Confidence            889999999999  68875 589999863        245667777775   76      8   9999999999999999


Q ss_pred             CCCccCCCCcceEEEEECCCCcEEEEEeecCCC-------CCCHHHHHHHHHhccccccC---CcccCCCCCCCC
Q psy17183         74 GCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQV-------GRNLKEILRQVEAFQLVDST---DTQCPVNWTTGQ  138 (145)
Q Consensus        74 g~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~-------~~~~~ell~~i~~l~~~~~~---~~~~p~~w~~~~  138 (145)
                      |+.      ..|++||||++|+|+|+-.-+...       .+.+.+.++.+-+-+.....   +.+|.|+|++|.
T Consensus       112 ~v~------~~P~~~liD~~G~i~y~G~idd~~~~~~~~~~~~L~~Ai~~ll~g~~~~~~~t~~~GC~ik~~~~~  180 (187)
T d2cvba1         112 RAL------RTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEEPPLKEAPAIGCTIKWRPGN  180 (187)
T ss_dssp             TCC------EESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCCCCSSCCCCCSEECCCCTTC
T ss_pred             ccc------ceeeEEEEcCCCeEEEEeeecCCCCCCCCCCHHHHHHHHHHHHcCCCCCccccCCCCcceeECCCC
Confidence            998      479999999999999875432211       11234444444444443322   478999999994

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=99.69  E-value=3.8e-17  Score=118.73  Aligned_cols=102  Identities=15%  Similarity=0.153  Sum_probs=82.6

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC-chHHHHHhCCCccC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS-THAISKTYGCYLSS   79 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~-~~~va~~yg~~~~~   79 (145)
                      -|+.|+|.|++.+  ++|+  |+.|++||.|+++++++|.+.   ++      +.  .+++++|. +..+++.||+....
T Consensus        57 ~C~~e~~~~~~~~--~~~~--~~~vi~iS~d~~~~~~~~~~~---~~------~~--~~~~~~~~~~~~~~~~~g~~~~~  121 (164)
T d1q98a_          57 VCATSVRKFNQQA--AKLS--NTIVLCISADLPFAQARFCGA---EG------IE--NAKTVSTFRNHALHSQLGVDIQT  121 (164)
T ss_dssp             CCCHHHHHHHHHH--HHST--TEEEEEEESSCHHHHTTCTTT---TT------CT--TEEEEECTTCTHHHHHTTCEECS
T ss_pred             cccHHHHHHHHHH--HHhc--cceEEeecCCcHHHHHHHHHH---hC------Cc--cccccccccchhHHHhhceeccc
Confidence            3999999999999  6885  899999999999999999875   54      51  35566664 78999999997543


Q ss_pred             ---CCCcceEEEEECCCCcEEEEEeecCCC-CCCHHHHHHHH
Q psy17183         80 ---AGHSLRAYYIIDKRGYLRSMNVSDIQV-GRNLKEILRQV  117 (145)
Q Consensus        80 ---~g~~~p~tfIID~dG~I~~~~~~~~~~-~~~~~ell~~i  117 (145)
                         .|.+.|++||||++|+|+|.++.+... .+++++++++|
T Consensus       122 ~~~~g~~~Ra~fvID~~G~I~y~~~~~~~~~epd~~~~l~~L  163 (164)
T d1q98a_         122 GPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAALAVL  163 (164)
T ss_dssp             STTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHTT
T ss_pred             CccccCcccEEEEECCCCEEEEEEECCCCCCCCCHHHHHHhh
Confidence               366789999999999999999877544 34788888765

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1e-16  Score=116.34  Aligned_cols=99  Identities=13%  Similarity=0.124  Sum_probs=80.8

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEe--cCchHHHHHhCCCcc
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLS--DSTHAISKTYGCYLS   78 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fplls--D~~~~va~~yg~~~~   78 (145)
                      .|+.|+|.|++++  .++  .++++++||.|+++.+++|.+.   ++      +   +|++++  |++++++++||+...
T Consensus        59 ~C~~~~~~l~~~~--~~~--~~~~vv~Is~d~~~~~~~~~~~---~~------~---~~~~~~~~d~~~~~~~~ygv~~~  122 (164)
T d1qxha_          59 VCAASVRKFNQLA--TEI--DNTVVLCISADLPFAQSRFCGA---EG------L---NNVITLSTFRNAEFLQAYGVAIA  122 (164)
T ss_dssp             CCCHHHHHHHHHH--HTS--TTEEEEEEESSCHHHHTTCCSS---TT------C---TTEEEEECTTCHHHHHHTTCBBC
T ss_pred             cchHHHHHHHHHH--Hhh--ccceeeeEEcCCHHHHHHHHHH---hC------C---CcceeeccccchhhHHhcCeEee
Confidence            4999999999998  455  4899999999999999999775   55      7   788664  569999999998754


Q ss_pred             C---CCCcceEEEEECCCCcEEEEEeecCC-CCCCHHHHHH
Q psy17183         79 S---AGHSLRAYYIIDKRGYLRSMNVSDIQ-VGRNLKEILR  115 (145)
Q Consensus        79 ~---~g~~~p~tfIID~dG~I~~~~~~~~~-~~~~~~ell~  115 (145)
                      .   .|.+.|++||||++|+|+|.++.+.. ..++++++|+
T Consensus       123 ~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~pd~d~~l~  163 (164)
T d1qxha_         123 DGPLKGLAARAVVVIDENDNVIFSQLVDEITTEPDYEAALA  163 (164)
T ss_dssp             SSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHTC
T ss_pred             cCcccCcccCEEEEEcCCCEEEEEEEcCCCCCCCCHHHhhc
Confidence            3   46678999999999999999987754 3457777653

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=2.4e-16  Score=114.41  Aligned_cols=103  Identities=17%  Similarity=0.143  Sum_probs=80.8

Q ss_pred             ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccE-EecCchHHHHHhCCCccC
Q psy17183          1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPL-LSDSTHAISKTYGCYLSS   79 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpl-lsD~~~~va~~yg~~~~~   79 (145)
                      .|+.|++.|++.+     ++.|++|++||.|+++++++|.+.   ++      +   .|++ ..|..+.+++.||+....
T Consensus        58 ~C~~e~~~l~~~~-----~~~g~~vv~Is~d~~~~~~~~~~~---~~------~---~~~~~~~~~~~~~~~~~g~~~~~  120 (166)
T d1xvqa_          58 VCATSVRTFDERA-----AASGATVLCVSKDLPFAQKRFCGA---EG------T---ENVMPASAFRDSFGEDYGVTIAD  120 (166)
T ss_dssp             CCCHHHHHHHHHH-----HHTTCEEEEEESSCHHHHTTCC------------------CEEEEECTTSSHHHHTTCBBCS
T ss_pred             ccHHHHHHHhhhc-----ccccccccccccchHHHHHHHHHH---hC------C---cccccccchhHHHHHHhCeeecc
Confidence            4999999987655     567999999999999999999875   54      6   6765 457799999999997643


Q ss_pred             ---CCCcceEEEEECCCCcEEEEEeecC-CCCCCHHHHHHHHHhc
Q psy17183         80 ---AGHSLRAYYIIDKRGYLRSMNVSDI-QVGRNLKEILRQVEAF  120 (145)
Q Consensus        80 ---~g~~~p~tfIID~dG~I~~~~~~~~-~~~~~~~ell~~i~~l  120 (145)
                         .|.+.|++||||++|+|+|.++.+. ...+++++++++|+++
T Consensus       121 ~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~~~~d~il~aL~a~  165 (166)
T d1xvqa_         121 GPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGAT  165 (166)
T ss_dssp             STTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHHT
T ss_pred             CcccCceeeEEEEEeCCCEEEEEEEcCCCCCCCCHHHHHHHHHhc
Confidence               3567899999999999999988764 3355899999999875

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.65  E-value=1.2e-15  Score=106.65  Aligned_cols=96  Identities=16%  Similarity=0.197  Sum_probs=81.0

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeC-CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSV-DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      |..+++.+++++  ++|...++.+++||. ++...+++|+++   ++      +   +||++.|.++++++.||+.    
T Consensus        40 C~~~~~~l~~~~--~~~~~~~~~~v~i~~~~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~v~----  101 (137)
T d1st9a_          40 CKKEFPYMANQY--KHFKSQGVEIVAVNVGESKIAVHNFMKS---YG------V---NFPVVLDTDRQVLDAYDVS----  101 (137)
T ss_dssp             HHHHHHHHHHHH--HHHGGGTEEEEEEEESCCHHHHHHHHHH---TT------C---CSCEEEETTSHHHHHTTCC----
T ss_pred             eeeccccccccc--ccccccccccccccccchhhhHHHHHHH---cC------C---Cccccccccchhhhhhhcc----
Confidence            999999999999  689999999999997 468888999886   76      8   9999999999999999987    


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                        ..|++||||++|+|++.+.|..+    .+++.+.|+.|+
T Consensus       102 --~~P~~~liD~~G~i~~~~~G~~~----~~~~~~~l~~lk  136 (137)
T d1st9a_         102 --PLPTTFLINPEGKVVKVVTGTMT----ESMIHDYMNLIK  136 (137)
T ss_dssp             --SSCEEEEECTTSEEEEEEESCCC----HHHHHHHHHHHC
T ss_pred             --ccceEEEECCCCEEEEEEECCCC----HHHHHHHHHhhC
Confidence              36999999999999999998753    344444444443

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.4e-15  Score=109.84  Aligned_cols=106  Identities=20%  Similarity=0.248  Sum_probs=79.2

Q ss_pred             hhH-HHHHHHHHhhhhhhhcCCcE-EEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC
Q psy17183          2 DTK-IACDVLKLVRKEILIVSPFQ-IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS   79 (145)
Q Consensus         2 ~t~-e~~~~~~~~~~~~f~~~gv~-vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~   79 (145)
                      ||. ++|.+.+.+  ++|+++|+. |+++|.|++.++++|.+.   .+    ...   +||+++|++++++++||+..+.
T Consensus        47 Ct~~~~~~~~~~~--~~~~~~g~~~i~~~s~~~~~~~~~~~~~---~~----~~~---~~~llsD~~~~~a~~~g~~~~~  114 (161)
T d1hd2a_          47 CSKTHLPGFVEQA--EALKAKGVQVVACLSVNDAFVTGEWGRA---HK----AEG---KVRLLADPTGAFGKETDLLLDD  114 (161)
T ss_dssp             HHHTHHHHHHHTH--HHHHTTTCCEEEEEESSCHHHHHHHHHH---TT----CTT---TCEEEECTTCHHHHHHTCBCCS
T ss_pred             chhhhhhHHHhhh--HHHHHcCCeEEEEEecCchhhhhhhhhh---cc----ccc---ccccccCCcceeeeeeeeeecc
Confidence            865 667788888  689999974 678999999999999886   33    115   7999999999999999998654


Q ss_pred             CC------CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         80 AG------HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        80 ~g------~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      .+      ...|.+|||+++|+|++.++.+.+.+++..+..+.|++
T Consensus       115 ~~~g~~~~~~s~r~~~I~~~G~I~~~~ve~~~~~~~~s~a~~vL~~  160 (161)
T d1hd2a_         115 SLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQ  160 (161)
T ss_dssp             TTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSCSSTTSHHHHHHH
T ss_pred             ccCccccccEEeEEEEEECCCEEEEEEEeCCCCCCCcCcHHHHHhc
Confidence            32      22344455556999999999877667765444554444

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=99.58  E-value=4.6e-15  Score=107.24  Aligned_cols=103  Identities=18%  Similarity=0.218  Sum_probs=79.1

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCc-EEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPF-QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv-~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      ||.|++.+...+. +.++++|. +|++||+|+++++++|...   .+   . ..   +|++++|++++++++||+.....
T Consensus        51 Ct~e~~~~~~~~~-d~~~~~g~~~v~~isvd~~~~~~~~~~~---~~---~-~~---~~~~lsD~~~~~~~~~g~~~~~~  119 (162)
T d1tp9a1          51 CSLKHVPGFIEKA-GELKSKGVTEILCISVNDPFVMKAWAKS---YP---E-NK---HVKFLADGSATYTHALGLELDLQ  119 (162)
T ss_dssp             HHHTHHHHHHHHH-HHHHHTTCCCEEEEESSCHHHHHHHHHT---CT---T-CS---SEEEEECTTSHHHHHTTCEEEET
T ss_pred             hhhhcchHHHHhh-hHHHHcCCcceeeeeccchhhhhhhhhh---cc---c-cc---ccccccchhhHHHhhhhhccccc
Confidence            9988887776654 67777775 7999999999999999986   33   1 14   79999999999999999875432


Q ss_pred             --C---CcceEEEEECCCCcEEEEEeecCCC-C-CCHHHHHHH
Q psy17183         81 --G---HSLRAYYIIDKRGYLRSMNVSDIQV-G-RNLKEILRQ  116 (145)
Q Consensus        81 --g---~~~p~tfIID~dG~I~~~~~~~~~~-~-~~~~ell~~  116 (145)
                        |   .+.|++|||| ||+|++.++.+... . .+.+++|+.
T Consensus       120 ~~g~g~~~~R~tfiId-dg~I~~~~ve~~~~~~~s~ae~vLk~  161 (162)
T d1tp9a1         120 EKGLGTRSRRFALLVD-DLKVKAANIEGGGEFTVSSAEDILKD  161 (162)
T ss_dssp             TTTSEEEECCEEEEEE-TTEEEEEEECSSSCCSSCSHHHHHTT
T ss_pred             cccCCcEEEEEEEEEE-CCEEEEEEEECCCCCccCCHHHHHhc
Confidence              2   2679999999 89999998865422 2 246666654

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.57  E-value=2.2e-14  Score=100.92  Aligned_cols=94  Identities=19%  Similarity=0.265  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC------CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD------SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGC   75 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D------~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~   75 (145)
                      |..++|.+++++  ++|++ ++.+|+|+.+      .....++|.++   ++      +   +||++.|.++++++.|++
T Consensus        44 C~~~~p~l~~l~--~~~~~-~~~~i~v~~~~~~~~~~~~~~~~~~~~---~~------~---~~p~~~D~~~~~~~~~~v  108 (143)
T d2b5xa1          44 CKEAMPQVNEFR--DKYQD-QLNVVAVHMPRSEDDLDPGKIKETAAE---HD------I---TQPIFVDSDHALTDAFEN  108 (143)
T ss_dssp             HHHHHHHHHHHH--HHHTT-TSEEEEEECCCSTTTSSHHHHHHHHHH---TT------C---CSCEEECSSCHHHHHTCC
T ss_pred             hhhhhhhhhhhh--hhhhc-cccceeEEeeccccccchhhhhhHHHh---hc------c---CccccccCccchHHHcCC
Confidence            899999999999  57764 6899999864      34556777775   76      8   999999999999999998


Q ss_pred             CccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         76 YLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        76 ~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .      ..|++||||++|+|++.+.|+.+    .+++.+.|++|
T Consensus       109 ~------~~P~~~~id~~G~i~~~~~G~~~----~~~l~~~l~~l  143 (143)
T d2b5xa1         109 E------YVPAYYVFDKTGQLRHFQAGGSG----MKMLEKRVNRV  143 (143)
T ss_dssp             C------CSSEEEEECTTCBEEEEEESCST----THHHHHHHHHH
T ss_pred             C------cCCEEEEECCCCEEEEEEECCCC----HHHHHHHHHhC
Confidence            7      37999999999999999998643    46777777664

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=3.2e-14  Score=99.12  Aligned_cols=95  Identities=13%  Similarity=0.071  Sum_probs=79.6

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC-CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD-SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      |..|+|.|.+++  +++  .++.+++|+.+ +....++|+++   ++      +   +||++.|.++++++.||+.    
T Consensus        39 C~~~~p~l~~~~--~~~--~~v~~v~v~~~~~~~~~~~~~~~---~~------~---~~p~~~d~~~~~~~~~~v~----   98 (134)
T d1lu4a_          39 CNAEAPSLSQVA--AAN--PAVTFVGIATRADVGAMQSFVSK---YN------L---NFTNLNDADGVIWARYNVP----   98 (134)
T ss_dssp             HHHHHHHHHHHH--HHC--TTSEEEEEECSSCHHHHHHHHHH---HT------C---CSEEEECTTSHHHHHTTCC----
T ss_pred             ceecchhHHHHh--hhh--ccccccccccccchhhhhhhhhh---hc------c---ccceeeCchHHHHHHcCCC----
Confidence            999999999998  354  48999999975 67778888886   76      8   9999999999999999987    


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                        ..|++||||++|+|++++..  ....+.+++.+.|++|
T Consensus        99 --~~P~~~lid~~G~i~~v~~~--~g~~~~~~l~~~l~~L  134 (134)
T d1lu4a_          99 --WQPAFVFYRADGTSTFVNNP--TAAMSQDELSGRVAAL  134 (134)
T ss_dssp             --SSSEEEEECTTSCEEEECCS--SSCCCHHHHHHHHHHC
T ss_pred             --cCCEEEEEeCCCeEEEEecc--CCCCCHHHHHHHHHcC
Confidence              47999999999999876432  2234688999999876

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.52  E-value=8.2e-14  Score=100.74  Aligned_cols=104  Identities=14%  Similarity=0.277  Sum_probs=79.3

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCc-EEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPF-QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv-~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      ||.|+|.+.+.+. +.++..++ .++.++.+++..+.+|.+.   ..     ..   .|++++|+++.++++||+.....
T Consensus        47 Ct~e~~~~~~~~~-~~~~~~~~~~vv~~~s~d~~~~~a~~~~---~~-----~~---~~~llsD~~~~~~~~~g~~~~~~  114 (163)
T d1nm3a2          47 CSSSHLPRYNELA-PVFKKYGVDDILVVSVNDTFVMNAWKED---EK-----SE---NISFIPDGNGEFTEGMGMLVGKE  114 (163)
T ss_dssp             HHHTHHHHHHHHH-HHHHHTTCCEEEEEESSCHHHHHHHHHH---TT-----CT---TSEEEECTTSHHHHHTTCEEECT
T ss_pred             chhhhhhhhhhcc-hhhhhhcccceeeeecCCHHHHHHHhhh---hc-----cC---ceeeeccCChHHHHHhhhhcccc
Confidence            9999999887753 34444443 5677777778888887765   32     15   89999999999999999875432


Q ss_pred             --C---CcceEEEEECCCCcEEEEEeecCCCCC-----CHHHHHHHHH
Q psy17183         81 --G---HSLRAYYIIDKRGYLRSMNVSDIQVGR-----NLKEILRQVE  118 (145)
Q Consensus        81 --g---~~~p~tfIID~dG~I~~~~~~~~~~~~-----~~~ell~~i~  118 (145)
                        |   .+.|.+|||| +|+|++.++.+...++     +.+++|+.|.
T Consensus       115 ~~g~g~~s~R~~~Iid-dG~I~~~~v~~~~~g~~~~~s~ae~vL~~L~  161 (163)
T d1nm3a2         115 DLGFGKRSWRYSMLVK-NGVVEKMFIEPNEPGDPFKVSDADTMLKYLA  161 (163)
T ss_dssp             TTTCCEEECCEEEEEE-TTEEEEEEECCSCSSCCCSSSSHHHHHHHHC
T ss_pred             ccccccccceEEEEEe-CCEEEEEEEecCCCCCCccccCHHHHHHHHc
Confidence              2   4899999998 9999999998765544     4678887774

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.51  E-value=7.5e-14  Score=103.07  Aligned_cols=103  Identities=10%  Similarity=0.106  Sum_probs=82.6

Q ss_pred             hhHH-HHHHHHHhhhhhh-hcCCc-EEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCcc
Q psy17183          2 DTKI-ACDVLKLVRKEIL-IVSPF-QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLS   78 (145)
Q Consensus         2 ~t~e-~~~~~~~~~~~~f-~~~gv-~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~   78 (145)
                      ||.+ +|.|.+.|  ++| +++|+ +|++||+|+++++++|.+.   .+      .+  ...+|+|++++++++||+..+
T Consensus        58 Cs~~hlp~y~~~~--d~f~k~~gvd~I~~iSvnD~fv~~aW~~~---~~------~~--~I~~lsD~~g~f~k~lg~~~d  124 (179)
T d1xiya1          58 CSTKMIPGYEEEY--DYFIKENNFDDIYCITNNDIYVLKSWFKS---MD------IK--KIKYISDGNSSFTDSMNMLVD  124 (179)
T ss_dssp             HHHTHHHHHHHTH--HHHHTTSCCSEEEEEESSCHHHHHHHHHH---TT------CC--SSEEEECTTSHHHHHTTCEEE
T ss_pred             cchhhCcchhhhH--HHHHHhcCCceEEEEecCCHHHHHHHHhh---cC------cc--eEEEeeCCchHHHHhhhcccc
Confidence            8775 78999999  688 68888 6999999999999999886   54      41  458999999999999999764


Q ss_pred             C--CCC---cceEEEEECCCCcEEEEEeecCCC--------C-CCHHHHHHHHH
Q psy17183         79 S--AGH---SLRAYYIIDKRGYLRSMNVSDIQV--------G-RNLKEILRQVE  118 (145)
Q Consensus        79 ~--~g~---~~p~tfIID~dG~I~~~~~~~~~~--------~-~~~~ell~~i~  118 (145)
                      .  .|+   +.|.++||| ||+|.+.++.+.+.        . .+.+.+|+.|+
T Consensus       125 ~~~~g~G~Rs~R~a~iid-dg~I~~~~vE~~~~~~~~~dp~~vSsae~iL~~L~  177 (179)
T d1xiya1         125 KSNFFMGMRPWRFVAIVE-NNILVKMFQEKDKQHNIQTDPYDISTVNNVKEFLK  177 (179)
T ss_dssp             CGGGTCCEEECCEEEEEE-TTEEEEEEECSSCCTTCSSCCCSTTSHHHHHHHHH
T ss_pred             cccCCCeeEEeeEEEEEE-CCEEEEEEEeCCCCCCCCCCCcccCCHHHHHHHHh
Confidence            3  233   678999998 89999999865332        1 35777777775

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.47  E-value=2e-13  Score=95.46  Aligned_cols=97  Identities=13%  Similarity=0.148  Sum_probs=78.1

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCC------HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDS------HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGC   75 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~------~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~   75 (145)
                      |..|++.+.+++  ++++..++.+++|+.+.      .....+|...   .+     ..   .||++.|.++++++.||+
T Consensus        38 C~~~~~~l~~l~--~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~---~~-----~~---~~~~~~D~~~~~~~~~~v  104 (143)
T d2fy6a1          38 CLSELGQTEKWA--QDAKFSSANLITVASPGFLHEKKDGDFQKWYAG---LN-----YP---KLPVVTDNGGTIAQSLNI  104 (143)
T ss_dssp             HHTTHHHHHHHH--HCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTT---SC-----CT---TSCEEECTTCHHHHHTTC
T ss_pred             ccccCcchhhhh--hhhccCCcEEEEEeeeecccccchhhhhhhhhh---cC-----Cc---ccccccccchHHHHHcCC
Confidence            899999999999  68999999999998652      2223344332   32     15   799999999999999998


Q ss_pred             CccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         76 YLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        76 ~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .      ..|++||||++|+|++.+.|..+    .+++.+.|+.++
T Consensus       105 ~------~~P~~~liD~~G~i~~~~~G~~~----~~~~~~~l~~~~  140 (143)
T d2fy6a1         105 S------VYPSWALIGKDGDVQRIVKGSIN----EAQALALIRDPN  140 (143)
T ss_dssp             C------SSSEEEEECTTSCEEEEEESCCC----HHHHHHHHHCTT
T ss_pred             C------ccCEEEEECCCCEEEEEEECCCC----HHHHHHHHHHHh
Confidence            7      37999999999999999988754    678888887765

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.45  E-value=3.5e-13  Score=97.67  Aligned_cols=101  Identities=13%  Similarity=0.126  Sum_probs=83.1

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC--CHHHHHHHHHHHhhcCCCCCCCCCCCCc-cEEecCchHHHHHhCCCcc
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD--SHLAHLAWTKTLTATSSNRSAIDPSKIV-PLLSDSTHAISKTYGCYLS   78 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--~~~~~~~~~~~~~~~~~~~~~~~~~~~f-pllsD~~~~va~~yg~~~~   78 (145)
                      |..+++.+++++  +.|...++.|++||.|  +++..++|.++   ++      +   +| +++.|..+.+.+.|+....
T Consensus        71 C~~~~~~l~~~~--~~~~~~~~~vv~vs~d~~~~~~~~~~~~~---~~------~---~~~~~~~d~~~~~~~~~~~~~~  136 (176)
T d1jfua_          71 CRKEMPALDELQ--GKLSGPNFEVVAINIDTRDPEKPKTFLKE---AN------L---TRLGYFNDQKAKVFQDLKAIGR  136 (176)
T ss_dssp             HHHHHHHHHHHH--HHHCBTTEEEEEEECCCSCTTHHHHHHHH---TT------C---CTTCCEECTTCHHHHHHHTTTC
T ss_pred             hHHHHHhhhhcc--ccccccccccccccccccchhhhhhhHhh---hC------C---cceeeeecchhHHHHHHhhhcc
Confidence            889999999999  6899999999999976  57778888886   65      6   55 5899999999999887643


Q ss_pred             CCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         79 SAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        79 ~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      ..|  .|++||||++|+|++.+.|+...  +.+++++.|++|
T Consensus       137 v~~--~P~~~lID~~G~I~~~~~G~~~~--~~~e~~~~l~al  174 (176)
T d1jfua_         137 ALG--MPTSVLVDPQGCEIATIAGPAEW--ASEDALKLIRAA  174 (176)
T ss_dssp             CSS--SSEEEEECTTSBEEEEEESCCCT--TSHHHHHHHHHH
T ss_pred             CCC--CCeEEEEcCCCEEEEEEECCCCC--ChHHHHHHHHHh
Confidence            223  69999999999999999987542  448899988876

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.44  E-value=1.1e-12  Score=90.74  Aligned_cols=93  Identities=17%  Similarity=0.168  Sum_probs=75.4

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeC-CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSV-DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      |..|+|.|.+++  ++++  +..+++|+. |+....++|.+.   ++      ++  .||++.|.++++++.||+.    
T Consensus        40 C~~~~p~l~~l~--~~~~--~~~~v~v~~~d~~~~~~~~~~~---~~------~~--~~~~l~D~~~~~~~~~~v~----  100 (134)
T d1zzoa1          40 CQGEAPVVGQVA--ASHP--EVTFVGVAGLDQVPAMQEFVNK---YP------VK--TFTQLADTDGSVWANFGVT----  100 (134)
T ss_dssp             HHHHHHHHHHHH--HHCT--TSEEEEEECSSCHHHHHHHHHH---TT------CT--TSEEEECTTCHHHHHTTCC----
T ss_pred             ccccchhhHHHH--hhhc--ccccccccccccchhHHHHHHh---cC------Cc--ceeEEeeccchHHHhcCCC----
Confidence            999999999999  4665  577777775 577788888886   55      41  5999999999999999987    


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                        ..|++||||++|+|++. .|.    .+.+++.+.|++|
T Consensus       101 --~~P~~~iiD~~G~i~~~-~g~----~~~~~l~~~i~~L  133 (134)
T d1zzoa1         101 --QQPAYAFVDPHGNVDVV-RGR----MSQDELTRRVTAL  133 (134)
T ss_dssp             --SSSEEEEECTTCCEEEE-ESC----CCHHHHHHHHHHH
T ss_pred             --ccCeEEEECCCCeEEEE-ECC----CCHHHHHHHHHhh
Confidence              37999999999999874 344    2467888888876

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=3e-12  Score=88.87  Aligned_cols=81  Identities=15%  Similarity=0.268  Sum_probs=64.4

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC-CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD-SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA   80 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~   80 (145)
                      |..|+|.|.+++      ..++.+++++.+ +......+...   .+     ..   .++++.|.++.+++.||+.    
T Consensus        35 C~~e~p~l~~~~------~~~~~vi~i~~~~~~~~~~~~~~~---~~-----~~---~~~~~~d~~~~~~~~~~v~----   93 (136)
T d1z5ye1          35 SRAEHQYLNQLS------AQGIRVVGMNYKDDRQKAISWLKE---LG-----NP---YALSLFDGDGMLGLDLGVY----   93 (136)
T ss_dssp             HHHHHHHHHHHH------HTTCCEEEEEESCCHHHHHHHHHH---HC-----CC---CSEEEEESSCHHHHHHTCC----
T ss_pred             cCccccchhhhh------hhhhhhcccccccchhhhHHHHHH---cC-----Cc---cceeecccchhHHHhcccC----
Confidence            899999887765      357889999875 45556666554   43     03   4568899999999999987    


Q ss_pred             CCcceEEEEECCCCcEEEEEeecCC
Q psy17183         81 GHSLRAYYIIDKRGYLRSMNVSDIQ  105 (145)
Q Consensus        81 g~~~p~tfIID~dG~I~~~~~~~~~  105 (145)
                        ..|++||||++|+|++.+.|+.+
T Consensus        94 --~~P~~~liD~~G~i~~~~~G~~~  116 (136)
T d1z5ye1          94 --GAPETFLIDGNGIIRYRHAGDLN  116 (136)
T ss_dssp             --SBSEEEEECTTSCEEEEEESCCC
T ss_pred             --CcceEEEEcCCCEEEEEEEcCCC
Confidence              47999999999999999998753

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.29  E-value=1.8e-11  Score=85.59  Aligned_cols=90  Identities=12%  Similarity=0.118  Sum_probs=69.6

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC-CHHHHHHHHHHHhhcCCCCCCCCCCCCcc-EEecCchHHHHHhCCCccC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD-SHLAHLAWTKTLTATSSNRSAIDPSKIVP-LLSDSTHAISKTYGCYLSS   79 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~fp-llsD~~~~va~~yg~~~~~   79 (145)
                      |..+++.+.+++     +..++.+++|+.+ +....++|.+.   ++      .   .|+ ++.|+++++++.||+.   
T Consensus        46 C~~~~p~l~~l~-----~~~~~~~~~i~~~~~~~~~~~~~~~---~~------~---~~~~~~~d~~~~~~~~~~v~---  105 (144)
T d1knga_          46 CHDEAPLLTELG-----KDKRFQLVGINYKDAADNARRFLGR---YG------N---PFGRVGVDANGRASIEWGVY---  105 (144)
T ss_dssp             HHHHHHHHHHHT-----TCTTSEEEEEEESCCHHHHHHHHHH---HC------C---CCSEEEEETTSHHHHHTTCC---
T ss_pred             ccccCchhhhhh-----hccCceeEEEEeeechHHHHHHHHH---cC------C---ccccccccccchhhhhcCcc---
Confidence            889999988876     3447899999875 55566777765   54      4   555 8899999999999987   


Q ss_pred             CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHH
Q psy17183         80 AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE  118 (145)
Q Consensus        80 ~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~  118 (145)
                         ..|++||||++|+|++.+.|+.+    .+++.+.|+
T Consensus       106 ---~~P~~~liD~~G~i~~~~~G~~~----~~~l~~~i~  137 (144)
T d1knga_         106 ---GVPETFVVGREGTIVYKLVGPIT----PDNLRSVLL  137 (144)
T ss_dssp             ---SSCEEEEECTTSBEEEEEESCCC----HHHHHHTHH
T ss_pred             ---ccceEEEEcCCCeEEEEEeCCCC----HHHHHHHHH
Confidence               47999999999999999988753    344444443

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.99  E-value=2.2e-09  Score=77.00  Aligned_cols=109  Identities=13%  Similarity=0.164  Sum_probs=75.4

Q ss_pred             ChhHHHHHHHHHhhhhhhhcC--CcEEEEEeCC----CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHH----
Q psy17183          1 MDTKIACDVLKLVRKEILIVS--PFQIIAVSVD----SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAIS----   70 (145)
Q Consensus         1 ~~t~e~~~~~~~~~~~~f~~~--gv~vi~VS~D----~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va----   70 (145)
                      .|..+++.|++++  +.|.+.  .+++++||.|    +++.+++|++.   ++      +....+.+|++...+.+    
T Consensus        46 ~C~~~~~~l~~~~--~~~~~~~~~v~~v~isiDp~~Dtp~~l~~y~~~---~~------~~~~~w~~lt~~~~~~~~~~~  114 (172)
T d1xzoa1          46 ICPPMTAHMTDLQ--KKLKAENIDVRIISFSVDPENDKPKQLKKFAAN---YP------LSFDNWDFLTGYSQSEIEEFA  114 (172)
T ss_dssp             CCCSHHHHHHHHH--HHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTT---SC------CCGGGEEEEBCSCHHHHHHHH
T ss_pred             cccccchhhhhhh--hhhccccccccccccccccccchHHHHHHHHHH---hc------cccccceeeccchHHHHHHHH
Confidence            4889999999988  578654  4889999975    68888999875   54      40003458888765543    


Q ss_pred             -HHhCCCccC-CC---C-cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccc
Q psy17183         71 -KTYGCYLSS-AG---H-SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQL  122 (145)
Q Consensus        71 -~~yg~~~~~-~g---~-~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~  122 (145)
                       +.|++.... .|   + -.+.+||||++|+|+..+.+...  ...+++++.|+++..
T Consensus       115 ~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~--~~~~~l~~dik~~~~  170 (172)
T d1xzoa1         115 LKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVEN--TPYDDIISDVKSAST  170 (172)
T ss_dssp             HHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSS--CCHHHHHHHHHHHTC
T ss_pred             HhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcCCCC--CCHHHHHHHHHHHHh
Confidence             455554321 11   1 13689999999999987766432  357899999888764

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=98.93  E-value=1.8e-09  Score=75.37  Aligned_cols=77  Identities=16%  Similarity=0.191  Sum_probs=57.1

Q ss_pred             hhHHHHHHHHHhhhhhhh-cCCcEEEEEeCCC-HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC---chHHHHHhCCC
Q psy17183          2 DTKIACDVLKLVRKEILI-VSPFQIIAVSVDS-HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS---THAISKTYGCY   76 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~-~~gv~vi~VS~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~---~~~va~~yg~~   76 (145)
                      |..|+|.|+++|  ++|. ..++++++||.|. .+..++|.++   ..          .+.+..|.   .+++++.||+.
T Consensus        43 C~~~~p~l~~l~--~~~~~~~~~~vi~is~d~~~~~~~~~~~~---~~----------~~~~~~~~~~~~~~l~~~y~v~  107 (144)
T d1o73a_          43 CRGFTPVLAEFY--EKHHVAKNFEVVLISWDENESDFHDYYGK---MP----------WLALPFDQRSTVSELGKTFGVE  107 (144)
T ss_dssp             HHHHHHHHHHHH--HHHTTTTTEEEEEEECCSSHHHHHHHHTT---CS----------SEECCTTCHHHHHHHHHHHTCC
T ss_pred             chhhhHHHHHHH--HHHhhccCeEEEEEecchhHHHHHHHHHh---cc----------ccceeeeccchHHHHHHHcCCC
Confidence            999999999999  5774 6789999999984 4455555543   32          23333443   45689999987


Q ss_pred             ccCCCCcceEEEEECCC-CcEEEE
Q psy17183         77 LSSAGHSLRAYYIIDKR-GYLRSM   99 (145)
Q Consensus        77 ~~~~g~~~p~tfIID~d-G~I~~~   99 (145)
                            ..|++||||++ |+|+..
T Consensus       108 ------~~Pt~~lID~~~G~Ii~~  125 (144)
T d1o73a_         108 ------SIPTLITINADTGAIIGT  125 (144)
T ss_dssp             ------SSSEEEEEETTTCCEEES
T ss_pred             ------cCCEEEEEECCCCEEEee
Confidence                  47999999998 888754

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.91  E-value=1.2e-09  Score=76.70  Aligned_cols=76  Identities=8%  Similarity=0.136  Sum_probs=58.0

Q ss_pred             hhHHHHHHHHHhhhhhhhc-CCcEEEEEeCCC-HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCc--hHHHHHhCCCc
Q psy17183          2 DTKIACDVLKLVRKEILIV-SPFQIIAVSVDS-HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDST--HAISKTYGCYL   77 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~-~gv~vi~VS~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~--~~va~~yg~~~   77 (145)
                      |..++|.|.++|  ++++. .+++||+||.|. .+..++|.++   .+      +   .++.+.|..  ..+++.||+. 
T Consensus        43 C~~~~p~L~~l~--~~~~~~~~~~vi~vs~D~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~l~~~y~v~-  107 (144)
T d1i5ga_          43 SRAFTPQLIDFY--KAHAEKKNFEVMLISWDESAEDFKDYYAK---MP------W---LALPFEDRKGMEFLTTGFDVK-  107 (144)
T ss_dssp             HHHHHHHHHHHH--HHHTTTTTEEEEEEECCSSHHHHHHHHTT---CS------S---EECCTTCHHHHHHHHHHTTCC-
T ss_pred             HhhhhHhHHHHH--HHHHhccCcEEEEEeccccHHHHHHHHHh---CC------C---CceeeEChHHHHHHHHHCCCC-
Confidence            899999999999  57865 479999999984 4445555553   54      4   555566654  3589999997 


Q ss_pred             cCCCCcceEEEEECCC-CcEE
Q psy17183         78 SSAGHSLRAYYIIDKR-GYLR   97 (145)
Q Consensus        78 ~~~g~~~p~tfIID~d-G~I~   97 (145)
                           .+|++||||++ |+|+
T Consensus       108 -----~iPt~~lid~~~G~vi  123 (144)
T d1i5ga_         108 -----SIPTLVGVEADSGNII  123 (144)
T ss_dssp             -----SSSEEEEEETTTCCEE
T ss_pred             -----CcCEEEEEeCCCCEEE
Confidence                 37999999997 8986

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.63  E-value=2.9e-08  Score=68.49  Aligned_cols=77  Identities=13%  Similarity=0.213  Sum_probs=57.1

Q ss_pred             hhHHHHHHHHHhhhhhhhc-CCcEEEEEeCCC-HHHHHHHHHHHhhcCCCCCCCCCCCCccE-EecCchHHHHHhCCCcc
Q psy17183          2 DTKIACDVLKLVRKEILIV-SPFQIIAVSVDS-HLAHLAWTKTLTATSSNRSAIDPSKIVPL-LSDSTHAISKTYGCYLS   78 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~-~gv~vi~VS~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~fpl-lsD~~~~va~~yg~~~~   78 (145)
                      |..+++.+.+++  ++|.. .++.+++||.|. ......+...   ..  .   .   .+++ +.|..+++++.|++.  
T Consensus        41 C~~~~~~l~~l~--~~~~~~~~~~~v~is~d~~~~~~~~~~~~---~~--~---~---~~~~~~~d~~~~l~~~y~v~--  105 (144)
T d1o8xa_          41 ARGFTPQLIEFY--DKFHESKNFEVVFCTWDEEEDGFAGYFAK---MP--W---L---AVPFAQSEAVQKLSKHFNVE--  105 (144)
T ss_dssp             HHHHHHHHHHHH--HHHTTTTTEEEEEEECCCSHHHHHHHHTT---CS--S---E---ECCGGGHHHHHHHHHHTTCC--
T ss_pred             cccccchhHHhh--hhcccccccccccccccccHHHHHHHHhh---cc--c---c---ceeeecccchhhHHHHcCCC--
Confidence            899999999999  57854 579999999874 4444444442   22  1   2   3443 346678999999998  


Q ss_pred             CCCCcceEEEEECCC-CcEE
Q psy17183         79 SAGHSLRAYYIIDKR-GYLR   97 (145)
Q Consensus        79 ~~g~~~p~tfIID~d-G~I~   97 (145)
                          ..|++||||++ |+|+
T Consensus       106 ----~~Pt~~liD~~~G~Vi  121 (144)
T d1o8xa_         106 ----SIPTLIGVDADSGDVV  121 (144)
T ss_dssp             ----SSSEEEEEETTTCCEE
T ss_pred             ----cCCEEEEEeCCCCEEE
Confidence                37999999998 7886

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=3.8e-05  Score=52.26  Aligned_cols=101  Identities=15%  Similarity=0.186  Sum_probs=63.0

Q ss_pred             hhHHHHHHHHHhhhhhhhc----CCcEEEEEeCC----CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCc---hHHH
Q psy17183          2 DTKIACDVLKLVRKEILIV----SPFQIIAVSVD----SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDST---HAIS   70 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~----~gv~vi~VS~D----~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~---~~va   70 (145)
                      |..+++.+.+.+  +.+..    ..+.++.++.+    .+....++...   .+      .   +|..+.+..   ..++
T Consensus        36 C~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~---~~~~~~~~~~~~~~~~  101 (160)
T d1wp0a1          36 CPEELEKMIQVV--DEIDSITTLPDLTPLFISIDPERDTKEAIANYVKE---FS------P---KLVGLTGTREEVDQVA  101 (160)
T ss_dssp             HHHHHHHHHHHH--HHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHT---TC------T---TCEEEECCHHHHHHHH
T ss_pred             cccchHHHHHHH--HHhhcccccccccccccccCCCcccHHHHHHHHhh---cC------C---CcccccCchHHhhHHh
Confidence            666777777776  34433    34556666653    45566666554   43      5   677777653   4577


Q ss_pred             HHhCCCccCC-------CC--cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         71 KTYGCYLSSA-------GH--SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        71 ~~yg~~~~~~-------g~--~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +.|++.....       +.  -.+.+||||++|+|+..+-+.    .+.+++.+.|+++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~----~~~~~i~~~I~~~  156 (160)
T d1wp0a1         102 RAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQN----KRKGEIAASIATH  156 (160)
T ss_dssp             HHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETT----CCHHHHHHHHHHH
T ss_pred             hhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCC----CCHHHHHHHHHHH
Confidence            8888653211       00  136889999999999875322    3467777777654

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.9e-05  Score=56.17  Aligned_cols=107  Identities=10%  Similarity=0.049  Sum_probs=63.8

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEec------Cch
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSD------STH   67 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD------~~~   67 (145)
                      |..+.+.|+++|  ++|+.+|++|+|++.+        +.+..++|++..  ...++.. +   +||+...      ..+
T Consensus        39 t~~~y~~L~~L~--~ky~~~g~~Il~fP~nqF~~qE~~~~~ei~~f~~~~--~~~~~~~-~---~f~~~~ki~VnG~~a~  110 (184)
T d2f8aa1          39 TVRDYTQMNELQ--RRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYV--RPGGGFE-P---NFMLFEKCEVNGAGAH  110 (184)
T ss_dssp             HHHHHHHHHHHH--HHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHT--SSCTTCC-C---SSEEBCCCCCSSTTCC
T ss_pred             chhhhHHHHHhh--hhhcccceeEEEeeccccccccccchhhhhhhhhee--ccccccc-c---ccccceeeeecCCCCC
Confidence            566799999999  6999999999999865        345677777641  1111221 6   7888653      233


Q ss_pred             HHHHHh----CCCccC-CC-Ccce-----------------EEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         68 AISKTY----GCYLSS-AG-HSLR-----------------AYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        68 ~va~~y----g~~~~~-~g-~~~p-----------------~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .+-+-+    +..... .+ +..|                 +.||||++|+|+..+.+...    ..++.+.|++|
T Consensus       111 ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLIdr~G~vv~rf~~~~~----p~~i~~~Ie~l  182 (184)
T d2f8aa1         111 PLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQ----TIDIEPDIEAL  182 (184)
T ss_dssp             HHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSC----GGGGHHHHHHH
T ss_pred             HHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEECCCCCEEEEECCCCC----HHHHHHHHHHH
Confidence            333222    111100 00 0112                 67999999999977654322    23455555544

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.79  E-value=2.6e-05  Score=52.97  Aligned_cols=38  Identities=13%  Similarity=0.299  Sum_probs=30.5

Q ss_pred             ceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        84 ~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|++||||++|+|+..+.+..+.....++|++.|++|-
T Consensus       130 ~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e~ik~ll  167 (169)
T d2b7ka1         130 SIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSYV  167 (169)
T ss_dssp             CCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHCC
T ss_pred             cceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            58899999999999887665554455678889998875

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=95.86  E-value=0.031  Score=35.95  Aligned_cols=47  Identities=13%  Similarity=0.280  Sum_probs=36.7

Q ss_pred             ecC-chHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         63 SDS-THAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        63 sD~-~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      .|. +.++++.||+.      ..|+.+++ ++|+++..+.|.     +.+++++.|++.+
T Consensus        64 ~~~~~~~l~~~~~V~------~~Pt~~~~-k~G~~v~~~~G~-----~~~~l~e~i~~~~  111 (112)
T d1f9ma_          64 CNQENKTLAKELGIR------VVPTFKIL-KENSVVGEVTGA-----KYDKLLEAIQAAR  111 (112)
T ss_dssp             CSSTTHHHHHHHCCS------SSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHHH
T ss_pred             ccccchhhHhheeec------cCCEEEEE-ECCEEEEEEeCC-----CHHHHHHHHHHcc
Confidence            443 57899999998      47999999 899999988875     3477877777643

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.45  E-value=0.012  Score=37.24  Aligned_cols=45  Identities=13%  Similarity=0.071  Sum_probs=34.0

Q ss_pred             cCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         64 DSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        64 D~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      |...++++.||+.      ..|+ +++.++|+++..+.|..    +.+++++.|++
T Consensus        60 ~~~~~l~~~~~V~------~vPT-i~i~~~G~~~~~~~G~~----~~~~~~~~i~~  104 (107)
T d1a8la2          60 IEYPEWADQYNVM------AVPK-IVIQVNGEDRVEFEGAY----PEKMFLEKLLS  104 (107)
T ss_dssp             GGCHHHHHHTTCC------SSCE-EEEEETTEEEEEEESCC----CHHHHHHHHHH
T ss_pred             ccccccccccccc------cceE-EEEEeCCeEEEEEECCC----CHHHHHHHHHH
Confidence            3457899999998      4796 56679999999888764    36777776654

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=95.39  E-value=0.021  Score=36.10  Aligned_cols=48  Identities=19%  Similarity=0.335  Sum_probs=38.5

Q ss_pred             EecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         62 LSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        62 lsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      =.|...++++.|++.      ..|+.+++ ++|+.+..+.|..    +.+++.+.|++.
T Consensus        58 d~d~~~~l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~~----~~~~l~~~i~~~  105 (107)
T d1dbya_          58 NTDESPNVASEYGIR------SIPTIMVF-KGGKKCETIIGAV----PKATIVQTVEKY  105 (107)
T ss_dssp             ETTTCHHHHHHHTCC------SSCEEEEE-SSSSEEEEEESCC----CHHHHHHHHHHH
T ss_pred             ecccchhHHHHhccc------ceEEEEEE-ECCeEEEEEeCCC----CHHHHHHHHHHh
Confidence            367789999999998      47999999 5899999888764    467788877653

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.015  Score=38.11  Aligned_cols=61  Identities=11%  Similarity=0.033  Sum_probs=42.0

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG   81 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g   81 (145)
                      |....|.|.++.  +.+. .++.++.|+.|.                          +|...|.+..+++.|++.     
T Consensus        43 Ck~~~P~~~~l~--~~~~-~~~~~~~vdv~~--------------------------~~~~~d~~~~l~~~~~V~-----   88 (119)
T d1woua_          43 CVQAEPVVREGL--KHIS-EGCVFIYCQVGE--------------------------KPYWKDPNNDFRKNLKVT-----   88 (119)
T ss_dssp             HHHHHHHHHHHG--GGCC-TTEEEEEEECCC--------------------------HHHHHCTTCHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHH--HhcC-CceEEEEEECCC--------------------------CcccchhhhhHHHhCCeE-----
Confidence            777777777776  3554 347777777653                          222345667889999998     


Q ss_pred             CcceEEEEECCCCcEE
Q psy17183         82 HSLRAYYIIDKRGYLR   97 (145)
Q Consensus        82 ~~~p~tfIID~dG~I~   97 (145)
                       ..|+.++++..+++.
T Consensus        89 -~iPT~i~~~~g~~l~  103 (119)
T d1woua_          89 -AVPTLLKYGTPQKLV  103 (119)
T ss_dssp             -SSSEEEETTSSCEEE
T ss_pred             -EEEEEEEEECCeEEe
Confidence             479999997666553

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=95.09  E-value=0.029  Score=35.17  Aligned_cols=50  Identities=16%  Similarity=0.246  Sum_probs=39.1

Q ss_pred             ccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         59 VPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        59 fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      +-+-.|.+..++++|++.      ..|+.+++ ++|+.+..+.|..    +.+++.+.|++
T Consensus        53 ~~v~~d~~~~l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~~----~~~~l~~~i~~  102 (104)
T d1fb6a_          53 YKLNTDEAPGIATQYNIR------SIPTVLFF-KNGERKESIIGAV----PKSTLTDSIEK  102 (104)
T ss_dssp             EEEETTTCHHHHHHTTCC------SSSEEEEE-ETTEEEEEEEECC----CHHHHHHHHHH
T ss_pred             eEEecccchhhhhhccee------eeeEEEEE-EcCeEEEEEeCCC----CHHHHHHHHHH
Confidence            335577899999999998      47987777 7999999988863    46778777765

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=94.93  E-value=0.0052  Score=39.61  Aligned_cols=44  Identities=11%  Similarity=0.097  Sum_probs=33.0

Q ss_pred             chHHHHHhCCCccCCCCcceEEEEECCCCcEEEE--EeecCCCCCCHHHHHHHHHh
Q psy17183         66 THAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSM--NVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        66 ~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~--~~~~~~~~~~~~ell~~i~~  119 (145)
                      ..++++.||+.      ..|+++++|++|+++..  ..|.    ++.+++++.|+.
T Consensus        71 ~~~l~~~~~v~------~~Pt~~~~~~~G~~~~~~~~~G~----~~~~~~~~~l~~  116 (117)
T d2fwha1          71 DVALLKHLNVL------GLPTILFFDGQGQEHPQARVTGF----MDAETFSAHLRD  116 (117)
T ss_dssp             HHHHHHHTTCC------SSSEEEEECTTSCBCGGGCBCSC----CCHHHHHHHHHH
T ss_pred             HHHHHhhhehh------hceEEEEEeCCCcEEeccccccc----CCHHHHHHHHhc
Confidence            56788999987      37999999999987632  2333    467888887764

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=94.73  E-value=0.037  Score=34.91  Aligned_cols=46  Identities=13%  Similarity=0.143  Sum_probs=37.2

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      .|.+..++++|++.      ..|+.+++ ++|+++..+.|.    ++.+++.+.|++
T Consensus        60 ~d~~~~l~~~~~I~------~~Pt~~~~-~~g~~v~~~~G~----~~~~~l~~~i~~  105 (108)
T d1thxa_          60 IDPNPTTVKKYKVE------GVPALRLV-KGEQILDSTEGV----ISKDKLLSFLDT  105 (108)
T ss_dssp             STTCHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHH
T ss_pred             ccccHHHHHHhccc------CCCEEEEE-ECCEEEEEEeCC----CCHHHHHHHHHH
Confidence            57788999999998      47999999 489998888876    346788887765

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=94.64  E-value=0.032  Score=35.20  Aligned_cols=49  Identities=16%  Similarity=0.241  Sum_probs=37.8

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +-.|.+..+++.||+.      ..|+.+++ ++|+++..+.|.    ++.+++.+.|++.
T Consensus        58 vd~d~~~~l~~~~~v~------~~PT~~~~-~~G~~v~~~~G~----~~~~~l~~~i~~~  106 (108)
T d2trxa_          58 LNIDQNPGTAPKYGIR------GIPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDAN  106 (108)
T ss_dssp             EETTTCTTHHHHTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred             ccccchhhHHHHhCCC------cEEEEEEE-ECCEEEEEEeCC----CCHHHHHHHHHHh
Confidence            3457788999999998      47977666 799999888876    3467788877653

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.54  E-value=0.014  Score=38.41  Aligned_cols=47  Identities=17%  Similarity=0.234  Sum_probs=34.9

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|.+.++++.||+.      ..|+.+++ ++|+.+....|..    +.+++++.|+++
T Consensus        71 ~d~~~~l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~~----~~~~l~~~i~~l  117 (119)
T d2es7a1          71 LEQSEAIGDRFNVR------RFPATLVF-TDGKLRGALSGIH----PWAELLTLMRSI  117 (119)
T ss_dssp             HHHHHHHHHTTTCC------SSSEEEEE-SCC----CEESCC----CHHHHHHHHHHH
T ss_pred             CCCCHHHHHhcCcC------cceEEEEE-EcCeEEEEeeCCC----CHHHHHHHHHHH
Confidence            45678899999998      47998888 8999999988873    478888888765

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=94.43  E-value=0.039  Score=34.65  Aligned_cols=49  Identities=14%  Similarity=0.164  Sum_probs=38.3

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +=.|....+++.|++.      ..|+.+++ ++|+.+..+.|..    +.+++.+.|+++
T Consensus        55 vd~~~~~~~~~~~~V~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~i~~~  103 (105)
T d1nw2a_          55 LNVDENPETTSQFGIM------SIPTLILF-KGGEPVKQLIGYQ----PKEQLEAQLADV  103 (105)
T ss_dssp             EETTTCHHHHHHTTCC------BSSEEEEE-ETTEEEEEEESCC----CHHHHHHHTTTT
T ss_pred             EECCCCcccHHHCCcc------eeeEEEEE-ECCEEEEEEECCC----CHHHHHHHHHHH
Confidence            3456788999999998      47988888 7899998888864    467777777665

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=94.34  E-value=0.021  Score=38.28  Aligned_cols=49  Identities=14%  Similarity=0.282  Sum_probs=39.8

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQL  122 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~  122 (145)
                      .|.+.++++.|++.      ..|+++++ ++|+.+..+.|.    ++.+++.+.|+.+-.
T Consensus        77 ~d~~~~la~~~~V~------~~PT~~~~-~~G~~v~~~~G~----~~~~~l~~~i~~ll~  125 (132)
T d2hfda1          77 LEQSEAIGDRFGVF------RFPATLVF-TGGNYRGVLNGI----HPWAELINLMRGLVE  125 (132)
T ss_dssp             HHHHHHHHHHHTCC------SCCEEEEE-ETTEEEEEECCC----SCHHHHHHHHHHHHS
T ss_pred             ecCCHHHHHhhccC------cceeEEEE-EcCcEeeeecCC----CCHHHHHHHHHHHhC
Confidence            35688999999998      47988888 999999888887    457888888887653

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.95  E-value=2.9e-05  Score=54.52  Aligned_cols=26  Identities=4%  Similarity=-0.146  Sum_probs=18.6

Q ss_pred             hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC
Q psy17183          2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD   31 (145)
Q Consensus         2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D   31 (145)
                      |..++|.|.+++  +.+.  +..+..|+.|
T Consensus        69 C~~~~P~l~~l~--~~~~--~~~~~~i~~d   94 (166)
T d1z6na1          69 CQINLAALDFAQ--RLQP--NIELAIISKG   94 (166)
T ss_dssp             HHHHHHHHHHHH--HHCT--TEEEEEECHH
T ss_pred             HHHHHHHHHHHH--HHCC--CCcEEEEECc
Confidence            888999999987  4554  5566666654

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.61  E-value=0.13  Score=32.19  Aligned_cols=48  Identities=8%  Similarity=0.153  Sum_probs=37.7

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +=.|...++++.|++.      ..|+.+++ ++|+++..+.|.     +.+++.+.|+.+
T Consensus        57 vd~d~~~~~~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~-----~~~~l~~~i~~~  104 (105)
T d2ifqa1          57 VDVDDCQDVASECEVK------CMPTFQFF-KKGQKVGEFSGA-----NKEKLEATINEL  104 (105)
T ss_dssp             EETTTCHHHHHHTTCC------BSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHH
T ss_pred             cccccCHhHHHHcCce------EEEEEEEE-ECCEEEEEEeCC-----CHHHHHHHHHhh
Confidence            4466788999999998      47998888 899999888874     256777777654

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.23  E-value=0.14  Score=32.36  Aligned_cols=48  Identities=17%  Similarity=0.229  Sum_probs=36.1

Q ss_pred             ccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHH
Q psy17183         59 VPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE  118 (145)
Q Consensus        59 fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~  118 (145)
                      +-+-.|...++++.|++.      ..|+.+++ ++|+++..+.|.     +.+++.+.|+
T Consensus        61 ~~i~~d~~~~l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~-----~~~~l~~~I~  108 (111)
T d1xwaa_          61 LKVDVDECEDIAMEYNIS------SMPTFVFL-KNGVKVEEFAGA-----NAKRLEDVIK  108 (111)
T ss_dssp             EEEETTTCHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHH
T ss_pred             EEEEeecCcchhhcCCCc------cccEEEEE-ECCEEEEEEeCC-----CHHHHHHHHH
Confidence            445667788999999998      37987777 899999888874     2456666665

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.17  E-value=0.18  Score=32.09  Aligned_cols=47  Identities=11%  Similarity=0.275  Sum_probs=36.2

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      +-.|...++++.||+.      ..|+.+++ ++|+++..+.|.     +.+++.+.|++
T Consensus        65 vd~~~~~~l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~-----~~~~l~~~i~k  111 (114)
T d1xfla_          65 VDTDELKSVASDWAIQ------AMPTFMFL-KEGKILDKVVGA-----KKDELQSTIAK  111 (114)
T ss_dssp             EETTTSHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHH
T ss_pred             EEeeeceeecccccee------eeEEEEEE-ECCEEEEEEeCc-----CHHHHHHHHHH
Confidence            4466788999999998      47988888 899999888774     35677776653

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.84  E-value=0.2  Score=31.74  Aligned_cols=40  Identities=20%  Similarity=0.274  Sum_probs=29.7

Q ss_pred             hHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHH
Q psy17183         67 HAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQV  117 (145)
Q Consensus        67 ~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i  117 (145)
                      ..+++.||+.      ..|+.+++ ++|+++....|..    +.+++.+.|
T Consensus        74 ~~~~~~~~V~------~~PTli~~-~~gk~~~~~~G~~----~~~el~~fl  113 (115)
T d1zmaa1          74 QAFRSRYGIP------TVPGFVHI-TDGQINVRCDSSM----SAQEIKDFA  113 (115)
T ss_dssp             HHHHHHHTCC------SSCEEEEE-ETTEEEEECCTTC----CHHHHHHHH
T ss_pred             cccccccccc------cccEEEEE-ECCEEEEEEcCCC----CHHHHHHHH
Confidence            4678889987      47999888 6899987776653    467776655

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=91.68  E-value=0.14  Score=32.69  Aligned_cols=51  Identities=10%  Similarity=0.148  Sum_probs=36.5

Q ss_pred             Ccc-EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         58 IVP-LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        58 ~fp-llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|- +=.|...++++.||+.      ..|+.+++ ++|+++..+.|..     .+.+.+.|+++
T Consensus        59 ~~~~vd~d~~~~l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~~-----~~~l~~~l~~~  110 (113)
T d1r26a_          59 KFAKVDADNNSEIVSKCRVL------QLPTFIIA-RSGKMLGHVIGAN-----PGMLRQKLRDI  110 (113)
T ss_dssp             EEEEEETTTCHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESSC-----HHHHHHHHHHH
T ss_pred             cccccccccchhhHHHcccc------CCCEEEEE-ECCEEEEEEeCCC-----HHHHHHHHHHH
Confidence            444 3356788999999998      37987777 8999999888742     35555555543

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.14  E-value=0.29  Score=32.83  Aligned_cols=45  Identities=18%  Similarity=0.135  Sum_probs=32.0

Q ss_pred             chHHHHHhCCCccCCCCcceEEEEECC-CCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183         66 THAISKTYGCYLSSAGHSLRAYYIIDK-RGYLRSMNVSDIQVGRNLKEILRQVEAFQ  121 (145)
Q Consensus        66 ~~~va~~yg~~~~~~g~~~p~tfIID~-dG~I~~~~~~~~~~~~~~~ell~~i~~l~  121 (145)
                      ...+++.|++.      ..|+++|||| .|+++..+ +.    .+.++.+..|+..-
T Consensus        90 ~~~~~~~y~v~------~~Pti~~idp~~ge~v~~~-~~----~~~~~fl~~L~~fl  135 (147)
T d2dlxa1          90 GQRYIQFYKLG------DFPYVSILDPRTGQKLVEW-HQ----LDVSSFLDQVTGFL  135 (147)
T ss_dssp             HHHHHHHHTCC------SSSEEEEECTTTCCCCEEE-SS----CCHHHHHHHHHHHH
T ss_pred             hhhhhhheecC------ceeEEEEEeCCCCeEeccc-CC----CCHHHHHHHHHHHH
Confidence            46789999987      3799999998 47776544 22    35677777776543

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.85  E-value=0.58  Score=29.58  Aligned_cols=49  Identities=8%  Similarity=0.011  Sum_probs=33.7

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      +|...+++.+|++.      ..|+.+++ ++|.......+.  ..++.+++++.|++.
T Consensus        68 ~~~~~~l~~~~~v~------~~Pti~~f-~~g~~~~~~~y~--g~~~~~~l~~fi~k~  116 (119)
T d2b5ea4          68 CTENQDLCMEHNIP------GFPSLKIF-KNSDVNNSIDYE--GPRTAEAIVQFMIKQ  116 (119)
T ss_dssp             TTTCHHHHHHTTCC------SSSEEEEE-ETTCTTCEEECC--SCCSHHHHHHHHHHH
T ss_pred             ccchHHHHHHhccc------cCCeEEEE-ECCEEeeeEEec--CCCCHHHHHHHHHHh
Confidence            44678999999987      47999888 676544332222  225788999888753

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.74  E-value=0.29  Score=30.21  Aligned_cols=47  Identities=13%  Similarity=0.157  Sum_probs=35.3

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      +-.|...++++.|++.      ..|+.+++ ++|+.+..+.|.     +.+++.+.|++
T Consensus        55 vd~d~~~~~~~~~~V~------~~Pt~i~~-k~G~~v~~~~G~-----~~~~l~~~i~k  101 (103)
T d1syra_          55 VDVDEVSEVTEKENIT------SMPTFKVY-KNGSSVDTLLGA-----NDSALKQLIEK  101 (103)
T ss_dssp             EETTTTHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHT
T ss_pred             eccccCcceeeeeeee------cceEEEEE-ECCEEEEEEeCc-----CHHHHHHHHHh
Confidence            4466788999999998      37976666 799999888774     24667776654

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.32  E-value=0.32  Score=30.56  Aligned_cols=47  Identities=2%  Similarity=-0.001  Sum_probs=36.5

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      +=.|...++++.||+.      ..|+.+++ ++|+.+..+.|.     +.+++.+.|++
T Consensus        58 vd~d~~~~l~~~~~v~------~~Pt~~~~-~~G~~v~~~~G~-----~~~~l~~~i~k  104 (107)
T d1gh2a_          58 VDVHQCQGTAATNNIS------ATPTFQFF-RNKVRIDQYQGA-----DAVGLEEKIKQ  104 (107)
T ss_dssp             EETTTSHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHH
T ss_pred             cccccchhhhhhcCce------eceEEEEE-ECCEEEEEEeCC-----CHHHHHHHHHH
Confidence            3367788999999998      47988888 899999888874     35677766654

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=90.21  E-value=0.35  Score=30.52  Aligned_cols=46  Identities=15%  Similarity=0.211  Sum_probs=35.5

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF  120 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l  120 (145)
                      .|...++++.|++.      ..|+.+++ ++|+.+....|.     +.+++.+.|++.
T Consensus        64 ~d~~~~l~~~~~v~------~~Pt~~~~-~~G~~v~~~~G~-----~~~~l~~~i~k~  109 (112)
T d1ep7a_          64 VDAVAAVAEAAGIT------AMPTFHVY-KDGVKADDLVGA-----SQDKLKALVAKH  109 (112)
T ss_dssp             TTTTHHHHHHHTCC------BSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHH
T ss_pred             cccccccccccccc------CCCEEEEE-ECCEEEEEEeCc-----CHHHHHHHHHHH
Confidence            66788999999998      37987777 799999888774     357777776653

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.01  E-value=0.037  Score=33.39  Aligned_cols=44  Identities=7%  Similarity=0.170  Sum_probs=30.1

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      +-.|.+.+++++||+.      ..|+ ++++++|++    +|.    ++.+++++.|++
T Consensus        40 ~~~d~~~~la~~~~V~------~~Pt-~~i~~~g~~----~G~----~~~~~l~~~i~~   83 (85)
T d1fo5a_          40 INVMENPQKAMEYGIM------AVPT-IVINGDVEF----IGA----PTKEALVEAIKK   83 (85)
T ss_dssp             EESSSSCCTTTSTTTC------CSSE-EEETTEEEC----CSS----SSSHHHHHHHHH
T ss_pred             ccccccccccccCCce------EeeE-EEEECCcEE----ECC----CCHHHHHHHHHh
Confidence            4456677788899987      3687 567888753    343    345778887764

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=88.69  E-value=0.35  Score=30.46  Aligned_cols=47  Identities=15%  Similarity=0.217  Sum_probs=34.9

Q ss_pred             EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      +-.|....++++|++.      ..|+.+++ ++|+.+..+.|..     .+++.+.|++
T Consensus        63 vd~d~~~~l~~~~~I~------~~Pt~~~~-k~G~~v~~~~G~~-----~~~l~~~i~k  109 (113)
T d1ti3a_          63 VDVDELKAVAEEWNVE------AMPTFIFL-KDGKLVDKTVGAD-----KDGLPTLVAK  109 (113)
T ss_dssp             EETTTCHHHHHHHHCS------STTEEEEE-ETTEEEEEEECCC-----TTHHHHHHHH
T ss_pred             eeeeccccccccCeec------ccceEEEE-ECCEEEEEEcCCC-----HHHHHHHHHH
Confidence            3456789999999998      37987777 6999998888742     3456666554

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.59  E-value=0.51  Score=28.96  Aligned_cols=42  Identities=14%  Similarity=0.185  Sum_probs=30.7

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      .|...+++..||+.      +.|+.|+   +|+.+  +.|.    ++.+++++.|++
T Consensus        54 ~~~~~~l~~~~~I~------~vPt~~~---ng~~~--~~G~----~~~~~l~~~les   95 (96)
T d1hyua4          54 GGTFQNEITERNVM------GVPAVFV---NGKEF--GQGR----MTLTEIVAKVDT   95 (96)
T ss_dssp             TTTCHHHHHHTTCC------SSSEEEE---TTEEE--EESC----CCHHHHHHHHCC
T ss_pred             cccchHHHhhcccc------cccEEEE---CCEEE--EecC----CCHHHHHHHHhC
Confidence            45688999999998      4798765   77765  3454    468899888764

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.48  E-value=0.49  Score=28.20  Aligned_cols=42  Identities=17%  Similarity=0.188  Sum_probs=26.4

Q ss_pred             ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183         63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA  119 (145)
Q Consensus        63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~  119 (145)
                      .|.+.+++++||+.      ..|+. +++.+|  +  +.|.    ++.+++.+.|++
T Consensus        41 ~d~~~~l~~~~~V~------~~Pt~-~~~~~~--~--~~G~----~~~~~l~~~i~~   82 (85)
T d1nhoa_          41 IMVDREKAIEYGLM------AVPAI-AINGVV--R--FVGA----PSREELFEAIND   82 (85)
T ss_dssp             TTTCGGGGGGTCSS------CSSEE-EETTTE--E--EECS----SCCHHHHHHHHH
T ss_pred             cccchhhHHhcCce------EeCEE-EECCcE--E--EEcC----CCHHHHHHHHHH
Confidence            34556678889988      36865 555544  3  3444    345777777765