Psyllid ID: psy17210

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNGDLAGQWITSFTLCSTLYH
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccEEEEEccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEc
Coil and Loop (DISEMBL)
MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLyshwpfgeiyckVNYFITNITVAASVFTLVAISLDRYMAIMkplqhrssrtKARISLVVIWLASGLlalpcvlhsttkikngdlagQWITSFTLCSTLYH
Flexible Loop (DISEMBL)
MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPlqhrssrtkARISLVVIWLASGLLALPCVLHSTtkikngdlagQWITSFTLCSTLYH
Low Complexity Region (SEG)
MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNGDLAGQWITSFTLCSTLYH
Disordered region (IsUnstruct)
***VTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNGDLAGQWITSFTLCSTLY*
Disordered Region (DISOPRED)
MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNGDLAGQWITSFTLCSTLYH
Disordered Region (DISEMBL)
MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNGDLAGQWITSFTLCSTLYH
Disordered Region (DISPRO)
MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNGDLAGQWITSFTLCSTLYH
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNGDLAGQWITSFTLCSTLYH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
P30974	504	Tachykinin-like peptides	no	N/A	0.848	0.222	0.625	4e-36
P30975	519	Tachykinin-like peptides	no	N/A	0.901	0.229	0.491	7e-27
O97512	467	Neuromedin-K receptor OS=	yes	N/A	0.863	0.244	0.5	4e-25
P29371	465	Neuromedin-K receptor OS=	yes	N/A	0.863	0.245	0.491	9e-25
P16177	452	Neuromedin-K receptor OS=	yes	N/A	0.863	0.252	0.473	2e-23
Q5DUB1	407	Substance-P receptor OS=M	N/A	N/A	0.863	0.280	0.464	3e-23
P30547	407	Substance-P receptor OS=C	yes	N/A	0.863	0.280	0.464	3e-23
P47937	452	Neuromedin-K receptor OS=	yes	N/A	0.863	0.252	0.464	5e-23
Q5DUB3	407	Substance-P receptor OS=C	no	N/A	0.833	0.270	0.472	9e-23
P25103	407	Substance-P receptor OS=H	no	N/A	0.833	0.270	0.472	1e-22

>sp|P30974|TLR1_DROME Tachykinin-like peptides receptor 86C OS=Drosophila melanogaster GN=Takr86C PE=2 SV=2

 Score =  149 bits (377), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 70/112 (62%), Positives = 89/112 (79%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           MRTVTNY+L+NLS+ADL M+  NCVFNFI+ML S WPFG IYC +N F+ N+TV+ SVFT
Sbjct: 114 MRTVTNYFLLNLSIADLLMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFT 173

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIK 112
           LVAIS DRY+AI+ PL+ R+SR K RI LV+IW  S +L+ PC+L+S+   K
Sbjct: 174 LVAISFDRYIAIVHPLKRRTSRRKVRIILVLIWALSCVLSAPCLLYSSIMTK 225

May play a role in neurogenesis.
Drosophila melanogaster (taxid: 7227)

>sp|P30975|TLR2_DROME Tachykinin-like peptides receptor 99D OS=Drosophila melanogaster GN=Takr99D PE=2 SV=2

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 85/120 (70%), Gaps = 1/120 (0%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           MRTVTNY++VNLS+AD  ++  N  FN+ YML S WPFGE YCK++ FI  +++ ASVFT
Sbjct: 132 MRTVTNYFIVNLSIADAMVSSLNVTFNYYYMLDSDWPFGEFYCKLSQFIAMLSICASVFT 191

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALP-CVLHSTTKIKNGDLAGQ 119
           L+AIS+DRY+AI++PLQ R S+        VIWLAS L++ P  +++ T ++    L+ +
Sbjct: 192 LMAISIDRYVAIIRPLQPRMSKRCNLAIAAVIWLASTLISCPMMIIYRTEEVPVRGLSNR 251

Probable receptor for tachykinin-like peptides.

Drosophila melanogaster (taxid: 7227)

>sp|O97512|NK3R_RABIT Neuromedin-K receptor OS=Oryctolagus cuniculus GN=TACR3 PE=2 SV=2

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 77/114 (67%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           MRTVTNY+LVNL+ +D  MA FN + NFIY L+S W FG  YC+   F     V AS+++
Sbjct: 118 MRTVTNYFLVNLAFSDASMAAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYS 177

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
           + AI++DRYMAI+ PL+ R S T  +I +  IW+ + LLALP  L+S TK+  G
Sbjct: 178 MTAIAVDRYMAIIDPLKPRLSATATKIVIGSIWILAFLLALPQCLYSKTKVMPG 231

This is a receptor for the tachykinin neuropeptide neuromedin-K (neurokinin B). It is associated with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Oryctolagus cuniculus (taxid: 9986)

>sp|P29371|NK3R_HUMAN Neuromedin-K receptor OS=Homo sapiens GN=TACR3 PE=2 SV=1

 Score =  112 bits (279), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 76/114 (66%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           MRTVTNY+LVNL+ +D  MA FN + NFIY L+S W FG  YC+   F     V AS+++
Sbjct: 116 MRTVTNYFLVNLAFSDASMAAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYS 175

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
           + AI++DRYMAI+ PL+ R S T  +I +  IW+ + LLA P  L+S TK+  G
Sbjct: 176 MTAIAVDRYMAIIDPLKPRLSATATKIVIGSIWILAFLLAFPQCLYSKTKVMPG 229

This is a receptor for the tachykinin neuropeptide neuromedin-K (neurokinin B). It is associated with G proteins that activate a phosphatidylinositol-calcium second messenger system. The rank order of affinity of this receptor to tachykinins is: neuromedin-K > substance K > substance P.

Homo sapiens (taxid: 9606)

>sp|P16177|NK3R_RAT Neuromedin-K receptor OS=Rattus norvegicus GN=Tacr3 PE=2 SV=1

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 75/114 (65%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           MRTVTNY+LVNL+ +D  +A FN + NFIY L+S W FG  YC+   F     V AS+++
Sbjct: 103 MRTVTNYFLVNLAFSDASVAAFNTLINFIYGLHSEWYFGANYCRFQNFFPITAVFASIYS 162

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
           + AI++DRYMAI+ PL+ R S T  +I +  IW+ + LLA P  L+S  K+  G
Sbjct: 163 MTAIAVDRYMAIIDPLKPRLSATATKIVIGSIWILAFLLAFPQCLYSKIKVMPG 216

This is a receptor for the tachykinin neuropeptide neuromedin-K (neurokinin B). It is associated with G proteins that activate a phosphatidylinositol-calcium second messenger system. The rank order of affinity of this receptor to tachykinins is: neuromedin-K > substance K > substance P.

Rattus norvegicus (taxid: 10116)

>sp|Q5DUB1|NK1R_MERUN Substance-P receptor OS=Meriones unguiculatus GN=TACR1 PE=2 SV=1

 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 75/114 (65%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           MRTVTNY+LVNL+ A+  MA FN V NF Y +++ W +G  YCK + F     V AS+++
Sbjct: 63  MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
           + A++ DRYMAI+ PLQ R S T  ++ + VIW+ + LLA P   +STT+   G
Sbjct: 123 MTAVAFDRYMAIIHPLQPRLSATATKVVIFVIWVLALLLAFPQGYYSTTETMPG 176

This is a receptor for the tachykinin neuropeptide substance P. It is probably associated with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Meriones unguiculatus (taxid: 10047)

>sp|P30547|NK1R_CAVPO Substance-P receptor OS=Cavia porcellus GN=TACR1 PE=2 SV=1

 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 75/114 (65%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           MRTVTNY+LVNL+ A+  MA FN V NF Y +++ W +G  YCK + F     V AS+++
Sbjct: 63  MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
           + A++ DRYMAI+ PLQ R S T  ++ + VIW+ + LLA P   +STT+   G
Sbjct: 123 MTAVAFDRYMAIIHPLQPRLSATATKVVICVIWVLALLLAFPQGYYSTTETMPG 176

This is a receptor for the tachykinin neuropeptide substance P. It is probably associated with G proteins that activate a phosphatidylinositol-calcium second messenger system. The rank order of affinity of this receptor to tachykinins is: substance P > substance K > neuromedin-K.

Cavia porcellus (taxid: 10141)

>sp|P47937|NK3R_MOUSE Neuromedin-K receptor OS=Mus musculus GN=Tacr3 PE=2 SV=2

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 75/114 (65%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           MRTVTNY+LVNL+ +D  +A FN + NFIY ++S W FG  YC+   F     V AS+++
Sbjct: 103 MRTVTNYFLVNLAFSDASVAAFNTLVNFIYGVHSEWYFGANYCRFQNFFPITAVFASIYS 162

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
           + AI++DRYMAI+ PL+ R S T  +I +  IW+ + LLA P  L+S  K+  G
Sbjct: 163 MTAIAVDRYMAIIDPLKPRLSATATKIVIGSIWILAFLLAFPQCLYSKIKVMPG 216

This is a receptor for the tachykinin neuropeptide neuromedin-K (neurokinin B). It is associated with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Mus musculus (taxid: 10090)

>sp|Q5DUB3|NK1R_CANFA Substance-P receptor OS=Canis familiaris GN=TACR1 PE=2 SV=1

 Score =  105 bits (261), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 74/110 (67%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           MRTVTNY+LVNL+ A+  MA FN V NF Y +++ W +G  YCK + F     V AS+++
Sbjct: 63  MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTK 110
           + A++ DRYMAI+ PLQ R S T  ++ + VIW+ + LLA P   +STT+
Sbjct: 123 MTAVAFDRYMAIIHPLQPRLSATATKVVICVIWVLALLLAFPQGYYSTTE 172

This is a receptor for the tachykinin neuropeptide substance P. It is probably associated with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Canis familiaris (taxid: 9615)

>sp|P25103|NK1R_HUMAN Substance-P receptor OS=Homo sapiens GN=TACR1 PE=1 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 74/110 (67%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           MRTVTNY+LVNL+ A+  MA FN V NF Y +++ W +G  YCK + F     V AS+++
Sbjct: 63  MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTK 110
           + A++ DRYMAI+ PLQ R S T  ++ + VIW+ + LLA P   +STT+
Sbjct: 123 MTAVAFDRYMAIIHPLQPRLSATATKVVICVIWVLALLLAFPQGYYSTTE 172

This is a receptor for the tachykinin neuropeptide substance P. It is probably associated with G proteins that activate a phosphatidylinositol-calcium second messenger system. The rank order of affinity of this receptor to tachykinins is: substance P > substance K > neuromedin-K.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
242007270	346	class A rhodopsin-like G-protein coupled	0.848	0.323	0.660	4e-37
321466116	327	hypothetical protein DAPPUDRAFT_54432 [D	0.878	0.354	0.638	6e-36
321466118	382	hypothetical protein DAPPUDRAFT_54510 [D	0.825	0.285	0.669	7e-36
347968626	491	AGAP002824-PA [Anopheles gambiae str. PE	0.848	0.228	0.625	1e-34
403183447	144	AAEL017414-PA, partial [Aedes aegypti]	0.848	0.777	0.625	1e-34
157970	504	tachykinin receptor [Drosophila melanoga	0.856	0.224	0.619	2e-34
195330051	528	GM26156 [Drosophila sechellia] gi|194120	0.856	0.214	0.619	3e-34
161078177	555	Tachykinin-like receptor at 86C, isoform	0.856	0.203	0.619	3e-34
195571943	504	GD20709 [Drosophila simulans] gi|1941998	0.856	0.224	0.619	3e-34
24645737	504	Tachykinin-like receptor at 86C, isoform	0.848	0.222	0.625	3e-34

>gi|242007270|ref|XP_002424465.1| class A rhodopsin-like G-protein coupled receptor GPRtak1, putative [Pediculus humanus corporis] gi|212507865|gb|EEB11727.1| class A rhodopsin-like G-protein coupled receptor GPRtak1, putative [Pediculus humanus corporis]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/112 (66%), Positives = 96/112 (85%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           MRTVTNY+LVNLS++DL M++ NC+ NFI+ML ++WPFG IYC +N F++++TVAA VFT
Sbjct: 1   MRTVTNYFLVNLSVSDLLMSILNCICNFIFMLNANWPFGTIYCSLNNFVSSVTVAAGVFT 60

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIK 112
           L+AIS DRYMAI++PLQHR S  KARI+LVVIWLASGLL +P +++STT  K
Sbjct: 61  LMAISFDRYMAIVRPLQHRMSHRKARIALVVIWLASGLLGIPPLVYSTTMTK 112

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321466116|gb|EFX77113.1| hypothetical protein DAPPUDRAFT_54432 [Daphnia pulex]

 Score =  155 bits (392), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 76/119 (63%), Positives = 97/119 (81%), Gaps = 3/119 (2%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           M+TVTNY+LVNLSLADL M++FNC+FNF +ML SHWPFG  YC VN FI N+TVAASVFT
Sbjct: 62  MKTVTNYFLVNLSLADLTMSLFNCIFNFTFMLNSHWPFGGFYCTVNNFIANVTVAASVFT 121

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHS---TTKIKNGDL 116
           LVAIS DRY+AI+ PL+ R S+  ARI++ +IWLAS +LA+PC+L+S   + K  NG++
Sbjct: 122 LVAISFDRYIAIVHPLRPRMSKCIARIAITLIWLASCILAVPCLLYSQIISHKYSNGEI 180

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321466118|gb|EFX77115.1| hypothetical protein DAPPUDRAFT_54510 [Daphnia pulex]

 Score =  155 bits (391), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 73/109 (66%), Positives = 93/109 (85%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           M+TVTNY+LVNLSLADL M+VFNCVFNF +ML +HWPFG  YC VN F+ N++VAASVFT
Sbjct: 63  MKTVTNYFLVNLSLADLTMSVFNCVFNFTFMLNNHWPFGGFYCTVNNFVANVSVAASVFT 122

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTT 109
           LVAIS DRY+AI+ PL+ R S++ ARI++ +IWLAS +LA+PC+L+S T
Sbjct: 123 LVAISFDRYIAIVYPLRPRMSKSTARIAISLIWLASCILAVPCLLYSQT 171

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347968626|ref|XP_312088.4| AGAP002824-PA [Anopheles gambiae str. PEST] gi|333467917|gb|EAA07472.5| AGAP002824-PA [Anopheles gambiae str. PEST]

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/112 (62%), Positives = 91/112 (81%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           MRTVTNY+L+NLS+ADL M+  NC FNFI+ML S WPFG +YC +N F+ N++VA+SVFT
Sbjct: 110 MRTVTNYFLLNLSVADLLMSSLNCSFNFIFMLNSDWPFGSVYCTINNFMANMSVASSVFT 169

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIK 112
           LVAIS DRY+AI+ PL+HR+SR KARI L++IW  S +LA PC+++ST   K
Sbjct: 170 LVAISFDRYIAIVHPLRHRTSRKKARIFLLIIWALSCVLAAPCLMYSTVMTK 221

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|403183447|gb|EJY58105.1| AAEL017414-PA, partial [Aedes aegypti]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/112 (62%), Positives = 92/112 (82%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           MRTVTNY+L+NLS+ADL M+  NC FNFI+ML S WPFG +YC +N F+ N++VA+SVFT
Sbjct: 5   MRTVTNYFLLNLSVADLLMSSLNCSFNFIFMLNSDWPFGAVYCTINNFMANMSVASSVFT 64

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIK 112
           LVAISLDRY+AI+ PL+HR+SR KAR+ L++IW  S +LA PC+++ST   K
Sbjct: 65  LVAISLDRYIAIVHPLRHRTSRKKARLFLLIIWALSCVLAAPCLMYSTVMTK 116

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157970|gb|AAA28722.1| tachykinin receptor [Drosophila melanogaster]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/113 (61%), Positives = 89/113 (78%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           MRTVTNY+L+NLS+ADL M+  NCVFNFI+ML S WPFG IYC +N F+ N+TV+ SVFT
Sbjct: 114 MRTVTNYFLLNLSIADLLMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFT 173

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKN 113
           LVAIS DRY+AI+ PL+ R+SR K RI LV+IW  S +L+ PC+L+S+   K 
Sbjct: 174 LVAISFDRYIAIVDPLKRRTSRRKVRIILVLIWALSCVLSAPCLLYSSIMTKQ 226

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195330051|ref|XP_002031722.1| GM26156 [Drosophila sechellia] gi|194120665|gb|EDW42708.1| GM26156 [Drosophila sechellia]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/113 (61%), Positives = 90/113 (79%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           MRTVTNY+L+NLS+ADL M+  NCVFNFI+ML S WPFG IYC +N F+ N+TV+ SVFT
Sbjct: 114 MRTVTNYFLLNLSIADLLMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFT 173

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKN 113
           LVAIS DRY+AI+ PL+ R+SR K RI LV+IW  S +L+ PC+L+S+   K+
Sbjct: 174 LVAISFDRYIAIVHPLKRRTSRRKVRIILVLIWALSCVLSAPCLLYSSIMTKH 226

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161078177|ref|NP_001097741.1| Tachykinin-like receptor at 86C, isoform B [Drosophila melanogaster] gi|116875698|gb|ABK30899.1| IP02824p [Drosophila melanogaster] gi|158030215|gb|ABW08638.1| Tachykinin-like receptor at 86C, isoform B [Drosophila melanogaster]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/113 (61%), Positives = 90/113 (79%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           MRTVTNY+L+NLS+ADL M+  NCVFNFI+ML S WPFG IYC +N F+ N+TV+ SVFT
Sbjct: 114 MRTVTNYFLLNLSIADLLMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFT 173

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKN 113
           LVAIS DRY+AI+ PL+ R+SR K RI LV+IW  S +L+ PC+L+S+   K+
Sbjct: 174 LVAISFDRYIAIVHPLKRRTSRRKVRIILVLIWALSCVLSAPCLLYSSIMTKH 226

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195571943|ref|XP_002103960.1| GD20709 [Drosophila simulans] gi|194199887|gb|EDX13463.1| GD20709 [Drosophila simulans]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/113 (61%), Positives = 90/113 (79%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           MRTVTNY+L+NLS+ADL M+  NCVFNFI+ML S WPFG IYC +N F+ N+TV+ SVFT
Sbjct: 114 MRTVTNYFLLNLSIADLLMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFT 173

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKN 113
           LVAIS DRY+AI+ PL+ R+SR K RI LV+IW  S +L+ PC+L+S+   K+
Sbjct: 174 LVAISFDRYIAIVHPLKRRTSRRKVRIILVLIWALSCVLSAPCLLYSSIMTKH 226

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24645737|ref|NP_524304.2| Tachykinin-like receptor at 86C, isoform A [Drosophila melanogaster] gi|68067613|sp|P30974.2|TLR1_DROME RecName: Full=Tachykinin-like peptides receptor 86C; Short=NKD gi|7299352|gb|AAF54544.1| Tachykinin-like receptor at 86C, isoform A [Drosophila melanogaster]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/112 (62%), Positives = 89/112 (79%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           MRTVTNY+L+NLS+ADL M+  NCVFNFI+ML S WPFG IYC +N F+ N+TV+ SVFT
Sbjct: 114 MRTVTNYFLLNLSIADLLMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFT 173

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIK 112
           LVAIS DRY+AI+ PL+ R+SR K RI LV+IW  S +L+ PC+L+S+   K
Sbjct: 174 LVAISFDRYIAIVHPLKRRTSRRKVRIILVLIWALSCVLSAPCLLYSSIMTK 225

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
FB|FBgn0004841	504	Takr86C "Tachykinin-like recep	0.856	0.224	0.619	4e-35
FB|FBgn0004622	519	Takr99D "Tachykinin-like recep	0.833	0.211	0.513	5.1e-27
UNIPROTKB|F1NJ82	419	TACR3 "Uncharacterized protein	0.863	0.272	0.491	1.1e-25
UNIPROTKB|F1N2X0	463	TACR3 "Uncharacterized protein	0.863	0.246	0.508	4.8e-25
ZFIN|ZDB-GENE-061207-19	395	tacr3l "tachykinin receptor 3-	0.833	0.278	0.472	5.9e-25
ZFIN|ZDB-GENE-090312-188	376	tacr2 "tachykinin receptor 2"	0.833	0.292	0.454	9.1e-25
UNIPROTKB|P29371	465	TACR3 "Neuromedin-K receptor"	0.863	0.245	0.491	2.4e-24
UNIPROTKB|Q9W6I3	411	ASPR "Uncharacterized protein"	0.878	0.282	0.474	4.5e-24
ZFIN|ZDB-GENE-060526-185	413	tacr1a "tachykinin receptor 1a	0.825	0.263	0.477	4.8e-24
UNIPROTKB|F1S112	360	TACR3 "Uncharacterized protein	0.863	0.316	0.482	5.3e-24

FB|FBgn0004841 Takr86C "Tachykinin-like receptor at 86C" [Drosophila melanogaster (taxid:7227)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 70/113 (61%), Positives = 90/113 (79%)

Query:     1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
             MRTVTNY+L+NLS+ADL M+  NCVFNFI+ML S WPFG IYC +N F+ N+TV+ SVFT
Sbjct:   114 MRTVTNYFLLNLSIADLLMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFT 173

Query:    61 LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKN 113
             LVAIS DRY+AI+ PL+ R+SR K RI LV+IW  S +L+ PC+L+S+   K+
Sbjct:   174 LVAISFDRYIAIVHPLKRRTSRRKVRIILVLIWALSCVLSAPCLLYSSIMTKH 226

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0004995 "tachykinin receptor activity" evidence=ISS;IDA

GO:0007217 "tachykinin receptor signaling pathway" evidence=ISS;IDA

GO:0008188 "neuropeptide receptor activity" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

FB|FBgn0004622 Takr99D "Tachykinin-like receptor at 99D" [Drosophila melanogaster (taxid:7227)]

 Score = 308 (113.5 bits), Expect = 5.1e-27, P = 5.1e-27
 Identities = 58/113 (51%), Positives = 86/113 (76%)

Query:     1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
             MRTVTNY++VNLS+AD  ++  N  FN+ YML S WPFGE YCK++ FI  +++ ASVFT
Sbjct:   132 MRTVTNYFIVNLSIADAMVSSLNVTFNYYYMLDSDWPFGEFYCKLSQFIAMLSICASVFT 191

Query:    61 LVAISLDRYMAIMKPLQHRSSRTKARISLV-VIWLASGLLALPC-VLHSTTKI 111
             L+AIS+DRY+AI++PLQ R S+ +  +++  VIWLAS L++ P  +++ T ++
Sbjct:   192 LMAISIDRYVAIIRPLQPRMSK-RCNLAIAAVIWLASTLISCPMMIIYRTEEV 243

GO:0005886 "plasma membrane" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0007217 "tachykinin receptor signaling pathway" evidence=ISS;IDA

GO:0004995 "tachykinin receptor activity" evidence=ISS;IDA

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS

UNIPROTKB|F1NJ82 TACR3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 56/114 (49%), Positives = 78/114 (68%)

Query:     1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
             MRTVTNY+LVNL+ +D  MA FN + NFIY L+S W FGE YC+ + F     V AS+++
Sbjct:    69 MRTVTNYFLVNLAFSDASMAAFNTLINFIYALHSEWYFGEAYCRFHNFFPITAVFASIYS 128

Query:    61 LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
             + AI++DRYMAI+ PL+ R S T  ++ +  IW+ + LLA P  L+S TK+  G
Sbjct:   129 MTAIAVDRYMAIIDPLKPRLSATATKVVIGSIWILAFLLAFPQCLYSITKVMPG 182

GO:0004995 "tachykinin receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1N2X0 TACR3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 288 (106.4 bits), Expect = 4.8e-25, P = 4.8e-25
 Identities = 58/114 (50%), Positives = 77/114 (67%)

Query:     1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
             MRTVTNY+LVNL+ +D  MA FN + NFIY L+S W FG  YC+   F     V AS+++
Sbjct:   114 MRTVTNYFLVNLAFSDASMAAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYS 173

Query:    61 LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
             + AIS+DRYMAI+ PL+ R S T  +I +  IW+ + LLALP  L+S TK+  G
Sbjct:   174 MTAISVDRYMAIIDPLKPRLSATATKIVIGGIWILAFLLALPQCLYSKTKVMPG 227

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004995 "tachykinin receptor activity" evidence=IEA

ZFIN|ZDB-GENE-061207-19 tacr3l "tachykinin receptor 3-like" [Danio rerio (taxid:7955)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 52/110 (47%), Positives = 75/110 (68%)

Query:     1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
             MRTVTNY+L+NL+ +D  MA FN + NFIY  +  W FGE+YCK + F     V AS+++
Sbjct:    56 MRTVTNYFLLNLAFSDASMAAFNTLINFIYATHGEWYFGEVYCKFHNFFPVTAVFASIYS 115

Query:    61 LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTK 110
             + AI++DRYMAI+ PL+ R S T  ++ +V IW  + +LA P   +STT+
Sbjct:   116 MTAIAVDRYMAIIHPLKPRLSATATKVVIVCIWALAVILAFPLCFYSTTR 165

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004995 "tachykinin receptor activity" evidence=IEA;IDA

GO:0007217 "tachykinin receptor signaling pathway" evidence=IDA

GO:0007218 "neuropeptide signaling pathway" evidence=IDA

GO:0007268 "synaptic transmission" evidence=IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

ZFIN|ZDB-GENE-090312-188 tacr2 "tachykinin receptor 2" [Danio rerio (taxid:7955)]

 Score = 263 (97.6 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
 Identities = 50/110 (45%), Positives = 74/110 (67%)

Query:     1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
             MRTVTNY++VNL+ +D  MA FN VFNF+Y L++ W FG  YCK   F     + +S+++
Sbjct:    65 MRTVTNYFIVNLAFSDASMATFNTVFNFVYALHNDWYFGLGYCKFQNFFPITAMFSSIYS 124

Query:    61 LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTK 110
             + AI++DRYMAI+ PL+ R S T  ++ + VIW  +  LA P   +++TK
Sbjct:   125 MAAIAVDRYMAIIHPLKPRLSSTTTKLLIGVIWTVAFSLAFPQCYYASTK 174

GO:0004995 "tachykinin receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

UNIPROTKB|P29371 TACR3 "Neuromedin-K receptor" [Homo sapiens (taxid:9606)]

 Score = 282 (104.3 bits), Expect = 2.4e-24, P = 2.4e-24
 Identities = 56/114 (49%), Positives = 76/114 (66%)

Query:     1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
             MRTVTNY+LVNL+ +D  MA FN + NFIY L+S W FG  YC+   F     V AS+++
Sbjct:   116 MRTVTNYFLVNLAFSDASMAAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYS 175

Query:    61 LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
             + AI++DRYMAI+ PL+ R S T  +I +  IW+ + LLA P  L+S TK+  G
Sbjct:   176 MTAIAVDRYMAIIDPLKPRLSATATKIVIGSIWILAFLLAFPQCLYSKTKVMPG 229

GO:0004995 "tachykinin receptor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007568 "aging" evidence=IEA

GO:0010460 "positive regulation of heart rate" evidence=IEA

GO:0032355 "response to estradiol stimulus" evidence=IEA

GO:0042053 "regulation of dopamine metabolic process" evidence=IEA

GO:0042220 "response to cocaine" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=IEA

GO:0043278 "response to morphine" evidence=IEA

GO:0045777 "positive regulation of blood pressure" evidence=IEA

GO:0060259 "regulation of feeding behavior" evidence=IEA

GO:0070474 "positive regulation of uterine smooth muscle contraction" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007217 "tachykinin receptor signaling pathway" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

UNIPROTKB|Q9W6I3 ASPR "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 276 (102.2 bits), Expect = 4.5e-24, P = 4.5e-24
 Identities = 55/116 (47%), Positives = 77/116 (66%)

Query:     1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
             MRTVTNY+LVNL+ A+  M+ FN V NF Y +++ W +G +YCK + F     V AS+++
Sbjct:    67 MRTVTNYFLVNLAFAEASMSAFNTVVNFTYAIHNEWYYGLLYCKFHNFFPIAAVFASIYS 126

Query:    61 LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNGDL 116
             + AI+LDRYMAI+ PLQ R S T  ++ + VIWL + LLA P   +S T+   G L
Sbjct:   127 MTAIALDRYMAIIHPLQPRLSATATKVVICVIWLLAFLLAFPQGYYSVTEELPGRL 182

GO:0004995 "tachykinin receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0048265 "response to pain" evidence=IEA

ZFIN|ZDB-GENE-060526-185 tacr1a "tachykinin receptor 1a" [Danio rerio (taxid:7955)]

 Score = 276 (102.2 bits), Expect = 4.8e-24, P = 4.8e-24
 Identities = 52/109 (47%), Positives = 75/109 (68%)

Query:     1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
             MRTVTNY+LVNL+ A+  M+ FN V NF+Y +++ W FG  YC+ + F     V AS+++
Sbjct:    69 MRTVTNYFLVNLAFAEASMSAFNTVINFVYSVHNEWYFGLYYCRFHNFFPIAAVFASIYS 128

Query:    61 LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTT 109
             + AI+LDRYMAI+ PLQ R S T+ ++ + VIW+ + LLA P   +S T
Sbjct:   129 MTAIALDRYMAIIHPLQQRMSATQTKVVIGVIWILALLLAFPQYYYSDT 177

GO:0004995 "tachykinin receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

UNIPROTKB|F1S112 TACR3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 55/114 (48%), Positives = 75/114 (65%)

Query:     1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
             MRTVTNY+LVNL+ +D  MA FN + NFIY L+S W FG  YC+   F     V AS+++
Sbjct:   115 MRTVTNYFLVNLAFSDASMAAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYS 174

Query:    61 LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
             + AI++DRYMAI+ PL+ R S T  +I +  IW+ + LLA P  L+S  K+  G
Sbjct:   175 MTAIAVDRYMAIIDPLKPRLSATATKIVIGGIWILAFLLAFPQCLYSKIKVMPG 228

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004995 "tachykinin receptor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	132
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	2e-28
PHA03087	335	PHA03087, PHA03087, G protein-coupled chemokine re	1e-10
PHA02638	417	PHA02638, PHA02638, CC chemokine receptor-like pro	2e-06
PHA02834	323	PHA02834, PHA02834, chemokine receptor-like protei	1e-04
PHA03234	338	PHA03234, PHA03234, DNA packaging protein UL33; Pr	0.003

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score =  103 bits (260), Expect = 2e-28
 Identities = 43/112 (38%), Positives = 73/112 (65%), Gaps = 2/112 (1%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           +RT TN +L+NL++ADL   +    +   Y++   WPFG+  CK+  F+  +   AS+  
Sbjct: 9   LRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVVNGYASILL 68

Query: 61  LVAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALPCVLHSTTK 110
           L AIS+DRY+AI+ PL++R  RT  +A++ ++V+W+ + LL+LP +L S  +
Sbjct: 69  LTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLR 120

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 5/112 (4%)

Query: 2   RTVTNYYLVNLSLADL-FMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           +T  + YL+NL+++DL F+      F   Y +   W FGE  CK+   +  I    S+  
Sbjct: 71  KTPMDIYLLNLAVSDLLFVMTLP--FQIYYYILFQWSFGEFACKIVSGLYYIGFYNSMNF 128

Query: 61  LVAISLDRYMAIMKPLQHRSSRTK--ARISLVVIWLASGLLALPCVLHSTTK 110
           +  +S+DRY+AI+ P++     T     I  +VIW+ S +   P +   TTK
Sbjct: 129 ITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTK 180

Length = 335

>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional

 Score = 45.4 bits (107), Expect = 2e-06
 Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 6/105 (5%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFI-YMLYSHWPFGEIYCKVNYFITNITVAASVF 59
           ++T+T+ Y+ NL+++DL   +F   F FI Y  +  W FG+  CKV      I   +++F
Sbjct: 128 IKTITDIYIFNLAISDL---IFVIDFPFIIYNEFDQWIFGDFMCKVISASYYIGFFSNMF 184

Query: 60  TLVAISLDRYMAIMKPLQHRSSRT-KARISLVVI-WLASGLLALP 102
            +  +S+DRY AI+ P+  +  RT    I L +I W+ S ++  P
Sbjct: 185 LITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSP 229

Length = 417

>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 27/106 (25%), Positives = 60/106 (56%), Gaps = 9/106 (8%)

Query: 4   VTNYYLVNLSLADLFMAVFNCVFNFIYMLYS---HWPFGEIYCKVNYFITNITVAASVFT 60
           V + YL N++++DL +     VF+F +++++    W FGE  CK+   +  +   +++F 
Sbjct: 61  VVDVYLFNIAMSDLML-----VFSFPFIIHNDLNEWIFGEFMCKLVLGVYFVGFFSNMFF 115

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISL-VVIWLASGLLALPCVL 105
           +  IS+DRY+ ++   + ++      + L V  W+ S +L++P ++
Sbjct: 116 VTLISIDRYILVVNATKIKNKSISLSVLLSVAAWVCSVILSMPAMV 161

Length = 323

>gnl|CDD|177562 PHA03234, PHA03234, DNA packaging protein UL33; Provisional

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 2/114 (1%)

Query: 2   RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTL 61
              T++YL+ L  +D    +  CVF       + + F + +C+   FI + + + S+  L
Sbjct: 66  HNATSFYLITLFASDFLHML--CVFFLTLNREALFNFNQAFCQCVLFIYHASCSYSICML 123

Query: 62  VAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNGD 115
             I+  RY  + +  ++         ++ +++LAS + A+P  L   T+ K G+
Sbjct: 124 AIIATIRYKTLHRRKKNDKKNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGN 177

Length = 338

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
KOG4219|consensus	423		99.89
PHA03234	338	DNA packaging protein UL33; Provisional	99.83
PHA02834	323	chemokine receptor-like protein; Provisional	99.8
KOG4220|consensus	503		99.79
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.79
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.74
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.73
PHA03235	409	DNA packaging protein UL33; Provisional	99.72
KOG2087|consensus	363		99.3
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	99.18
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	99.03
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	98.51
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	98.38
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	98.27
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	97.64
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	97.43
PF10316	273	7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep	96.42
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	95.68
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	95.57
PF10292	324	7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c	95.55
PF00002	242	7tm_2: 7 transmembrane receptor (Secretin family);	95.31
PF03383	153	Serpentine_r_xa: Caenorhabditis serpentine recepto	95.02
PF02118	275	Srg: Srg family chemoreceptor; InterPro: IPR000609	94.96
PF02175	236	7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept	92.59
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	92.21
PF02117	328	7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept	85.96
PF04789	305	DUF621: Protein of unknown function (DUF621); Inte	81.13

>KOG4219|consensus

Probab=99.89  E-value=3.5e-23  Score=146.87  Aligned_cols=114  Identities=53%  Similarity=0.849  Sum_probs=106.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      ||+-+|+|+.|||++|+..+++..+......+..+|.+|...|++..|+......+|++++++||+|||.||.||++.+.
T Consensus        66 MRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r~  145 (423)
T KOG4219|consen   66 MRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPRP  145 (423)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccCC
Confidence            68999999999999999999999999887778889999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhehhhhHHHhHHHHHHHHHhhceeeCC
Q psy17210         81 SRTKARISLVVIWLASGLLALPCVLHSTTKIKNG  114 (132)
Q Consensus        81 ~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~~~~~  114 (132)
                      ++|.++.++++||+.+++.+.|..+..+.+...+
T Consensus       146 s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~  179 (423)
T KOG4219|consen  146 SRRSSKIIILLIWALALLLALPQLLYSSVEELYL  179 (423)
T ss_pred             CCcceeehhHHHHHHHHHHhccceeeeeeEEeec
Confidence            9999999999999999999999998877774444

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.83  E-value=1.6e-20  Score=134.40  Aligned_cols=108  Identities=20%  Similarity=0.394  Sum_probs=88.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      +|+++|+|+.|||++|++.++. .|..... ...+|.+|+..|++..++......+|++++++||+|||.+|++|.+++.
T Consensus        65 ~rt~tn~fi~NLAvaDLL~~l~-lp~~~~~-~~~~w~fG~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~  142 (338)
T PHA03234         65 KHNATSFYLITLFASDFLHMLC-VFFLTLN-REALFNFNQAFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK  142 (338)
T ss_pred             cccHHHHHHHHHHHHHHHHHHH-HHHHHHH-HhCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh
Confidence            4789999999999999999864 4554443 3457999999999999999999999999999999999999999987654


Q ss_pred             ccchhhhhehhhhHHHhHHHHHHHHHhhce
Q psy17210         81 SRTKARISLVVIWLASGLLALPCVLHSTTK  110 (132)
Q Consensus        81 ~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~  110 (132)
                      ++++.+..++++|+.+++.++|+....+..
T Consensus       143 ~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~  172 (338)
T PHA03234        143 KNNHIGRNIGILFLASAMCAIPAALFVKTE  172 (338)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhhHhHeeeee
Confidence            333444455667999999999998765433

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.80  E-value=3.3e-19  Score=127.01  Aligned_cols=106  Identities=26%  Similarity=0.510  Sum_probs=87.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc-
Q psy17210          2 RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS-   80 (132)
Q Consensus         2 ~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~-   80 (132)
                      ++++|+++.|||++|++. ....|..+.... ++|..|+..|++..+....+..+|++++++||+|||.+|++|+++++ 
T Consensus        59 ~~~~n~~i~nLAiaDll~-~~~lP~~i~~~~-~~w~~g~~~C~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~~  136 (323)
T PHA02834         59 MFVVDVYLFNIAMSDLML-VFSFPFIIHNDL-NEWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNK  136 (323)
T ss_pred             cchhhhhhHHHHHHHHHH-HHHHHHHHHHHc-CCcCCcchHHHhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhccCC
Confidence            467899999999999986 556787665443 57999999999999988888889999999999999999999987654 


Q ss_pred             ccchhhhhehhhhHHHhHHHHHHHHHhhc
Q psy17210         81 SRTKARISLVVIWLASGLLALPCVLHSTT  109 (132)
Q Consensus        81 ~~~~~~~~~~~iw~~s~~~~~~~~~~~~~  109 (132)
                      +.+++...++.+|+.+++.++|+..+.+.
T Consensus       137 ~~~~~~~~i~~iWi~s~l~~~P~~~~~~~  165 (323)
T PHA02834        137 SISLSVLLSVAAWVCSVILSMPAMVLYYV  165 (323)
T ss_pred             ccchHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence            33455666788999999999998876543

>KOG4220|consensus

Probab=99.79  E-value=2.5e-20  Score=132.86  Aligned_cols=110  Identities=31%  Similarity=0.595  Sum_probs=103.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      |||..|+|+.+||++|+++|.+.+|....+.+.+.|..|...|.+...+.+..+.+|++.+..|++|||.+|.+|+.|+.
T Consensus        61 LqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYra  140 (503)
T KOG4220|consen   61 LQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRA  140 (503)
T ss_pred             eeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHHHHHhhhhhhhhhheeeeecceeecccccccc
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             --ccchhhhhehhhhHHHhHHHHHHHHHhhce
Q psy17210         81 --SRTKARISLVVIWLASGLLALPCVLHSTTK  110 (132)
Q Consensus        81 --~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~  110 (132)
                        +.+++..+|++.|++|++.-.|.+++|..-
T Consensus       141 kRTtkrA~~MI~~AW~iSfiLWaPaIl~Wqyi  172 (503)
T KOG4220|consen  141 KRTTKRAGLMIGAAWVLSFVLWAPAILFWQYI  172 (503)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence              777899999999999999999988877644

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.79  E-value=5e-19  Score=120.27  Aligned_cols=113  Identities=37%  Similarity=0.697  Sum_probs=99.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      +|+++++++.|||++|++.++...|........++|..++..|+...++.......+.++++++++|||.++++|+++++
T Consensus        15 ~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~   94 (257)
T PF00001_consen   15 LRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISIDRYLAICHPLRYRR   94 (257)
T ss_dssp             G-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHTHHH
T ss_pred             CCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            47899999999999999999988888887777778999999999999999999999999999999999999999999887


Q ss_pred             --ccchhhhhehhhhHHHhHHHHHHHHHhhceeeC
Q psy17210         81 --SRTKARISLVVIWLASGLLALPCVLHSTTKIKN  113 (132)
Q Consensus        81 --~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~~~~  113 (132)
                        ++++.+..++.+|+.++..++|+.++.+....+
T Consensus        95 ~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~  129 (257)
T PF00001_consen   95 IRTRRRARIIIILIWIISFLISLPPLFFSWVYFVS  129 (257)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEES
T ss_pred             ccccccccccccccccccccccccccccccccccc
Confidence              446778888999999999999998875544433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.74  E-value=2.3e-17  Score=121.06  Aligned_cols=107  Identities=25%  Similarity=0.542  Sum_probs=90.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      +|+++|+++.|||++|++..+ ..|..+... .++|.+++..|+...++......++++.++++++|||.+|++|.++++
T Consensus       128 lrt~t~i~llnLAisDLl~~l-~lPf~i~~~-~~~W~fg~~~Ck~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~  205 (417)
T PHA02638        128 IKTITDIYIFNLAISDLIFVI-DFPFIIYNE-FDQWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQK  205 (417)
T ss_pred             CCCHhHHHHHHHHHHHHHHHH-HHHHHHHHH-hccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            578999999999999998754 677766554 367999999999999999999999999999999999999999988765


Q ss_pred             --ccchhhhhehhhhHHHhHHHHHHHHHhhc
Q psy17210         81 --SRTKARISLVVIWLASGLLALPCVLHSTT  109 (132)
Q Consensus        81 --~~~~~~~~~~~iw~~s~~~~~~~~~~~~~  109 (132)
                        +++..+..++.+|+.+++.++|+.++.+.
T Consensus       206 ~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~  236 (417)
T PHA02638        206 YRTFNIGIILCIISWILSLIITSPAYFIFEA  236 (417)
T ss_pred             eecHhhhHhhHhHHHHHHHHHHHHHHHHhhc
Confidence              33445666788999999999999886543

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.73  E-value=3e-17  Score=117.26  Aligned_cols=109  Identities=30%  Similarity=0.553  Sum_probs=93.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      +|+|.|+++.|||++|++.++ ..|..+......+|..++..|+...+.......++.+++++||+|||.++++|++++.
T Consensus        70 ~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~  148 (335)
T PHA03087         70 IKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNK  148 (335)
T ss_pred             ccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Confidence            589999999999999998776 4666665555677888999999999999999999999999999999999999998866


Q ss_pred             --ccchhhhhehhhhHHHhHHHHHHHHHhhce
Q psy17210         81 --SRTKARISLVVIWLASGLLALPCVLHSTTK  110 (132)
Q Consensus        81 --~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~  110 (132)
                        +++++...++.+|+++++...|+....+..
T Consensus       149 ~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~  180 (335)
T PHA03087        149 INTVKYGYIVSLVIWIISIIETTPILFVYTTK  180 (335)
T ss_pred             ccchhhhHHHHHHHHHHHHHHhccHhheeeee
Confidence              556677777889999999999888765544

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.72  E-value=4.5e-17  Score=119.26  Aligned_cols=101  Identities=24%  Similarity=0.330  Sum_probs=83.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccc--cccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          3 TVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPF--GEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         3 ~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~--~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      +++++|+.|||++|++. ++..|..+..   ..|..  ++..|++..+....+..+|++++++||+|||.+|++|.++++
T Consensus        67 ~~~~~~I~NLAvsDLl~-l~~lP~~i~~---~~~~~~~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~  142 (409)
T PHA03235         67 STPTLYMTNLYLANLLT-VFVLPFIMLS---NQGLLSGSVAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRARS  142 (409)
T ss_pred             CccHHHHHHHHHHHHHH-HHHHHHHHHh---cCccccCCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccC
Confidence            46689999999999986 4567766543   33443  468999999999999999999999999999999999986654


Q ss_pred             -ccchhhhhehhhhHHHhHHHHHHHHHh
Q psy17210         81 -SRTKARISLVVIWLASGLLALPCVLHS  107 (132)
Q Consensus        81 -~~~~~~~~~~~iw~~s~~~~~~~~~~~  107 (132)
                       +++++..+++++|+.+++.++|+.++.
T Consensus       143 ~~~~~a~~ii~~iWi~sll~s~P~~~~~  170 (409)
T PHA03235        143 SAYRSTYKILGLTWFASLICSGPAPVYT  170 (409)
T ss_pred             cccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence             466788888899999999999976543

>KOG2087|consensus

Probab=99.30  E-value=1.2e-11  Score=87.66  Aligned_cols=111  Identities=22%  Similarity=0.318  Sum_probs=87.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhHHHHHHHH-h------ccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcC
Q psy17210          3 TVTNYYLVNLSLADLFMAVFNCVFNFIYML-Y------SHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKP   75 (132)
Q Consensus         3 ~~~~~ll~~La~~Dll~~~~~~~~~~~~~~-~------~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p   75 (132)
                      ++..+++.|||.+|++.++........... .      ..|......|+..+|+..+.+-.|++.++.+++||+.+|.+|
T Consensus        57 ~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p  136 (363)
T KOG2087|consen   57 NSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCPVAGFLAVFASELSVFLLTLITLERWLSITYP  136 (363)
T ss_pred             cchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheecc
Confidence            466799999999999999865444433221 1      123344589999999999999999999999999999999999


Q ss_pred             CCccc-cc-chhhhhehhhhHHHhHHHHHHHHHhhceeeC
Q psy17210         76 LQHRS-SR-TKARISLVVIWLASGLLALPCVLHSTTKIKN  113 (132)
Q Consensus        76 ~~~~~-~~-~~~~~~~~~iw~~s~~~~~~~~~~~~~~~~~  113 (132)
                      ++-.+ .+ |....+.+..|+.+++.++.|.++...+-.+
T Consensus       137 ~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y~~~  176 (363)
T KOG2087|consen  137 FRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSYGAS  176 (363)
T ss_pred             ccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCCccc
Confidence            98766 33 3467777889999999999999885555333

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.18  E-value=7.5e-11  Score=81.78  Aligned_cols=88  Identities=20%  Similarity=0.291  Sum_probs=72.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      ||+|++++++.+|++|++......|.....+.  +.+.....|-...+...++...+...+..|++||++||+.|.+|++
T Consensus        21 Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~~--~~~i~~~~Cf~~~~~~~f~~~~qs~~~l~i~iDr~iaV~~P~~Y~~   98 (257)
T PF10320_consen   21 LRSPCYILICILCFADLICLLGTLPFMLFLFR--DHQITRSECFWQIFFYIFFQCAQSVIMLAIAIDRLIAVCFPLRYRT   98 (257)
T ss_pred             cccchHHHHHHHHHHHHHHHhhHHHHHHHHHh--heeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEeehhhhhh
Confidence            79999999999999999998887777774432  3455667898888888888889999999999999999999999999


Q ss_pred             ccchhhhheh
Q psy17210         81 SRTKARISLV   90 (132)
Q Consensus        81 ~~~~~~~~~~   90 (132)
                      ..++......
T Consensus        99 ~~~~~y~~~~  108 (257)
T PF10320_consen   99 ISTRKYLIIL  108 (257)
T ss_pred             cccccchhhH
Confidence            6655544443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.03  E-value=1.7e-09  Score=75.65  Aligned_cols=122  Identities=14%  Similarity=0.171  Sum_probs=87.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccccc-ccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCcc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEI-YCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHR   79 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~   79 (132)
                      +|++.+.+..+.|++|.+.++.......-....+.....+. .-...+.....+-..+..+..+||++|+.++..|.+|+
T Consensus        24 ~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~~~~~liaiNRf~ai~fP~~y~  103 (274)
T PF10328_consen   24 LRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGPLSHLLIAINRFCAIFFPFKYK  103 (274)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeeHHHHH
Confidence            57899999999999999988744322222222222122221 22344667777778899999999999999999999988


Q ss_pred             c--ccchhhhhehhhhHHHhHHHHHHHHHhhceeeCCccccceee
Q psy17210         80 S--SRTKARISLVVIWLASGLLALPCVLHSTTKIKNGDLAGQWIT  122 (132)
Q Consensus        80 ~--~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (132)
                      +  +.+.++..+...|++++....+.....+...........|..
T Consensus       104 ~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~  148 (274)
T PF10328_consen  104 KIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSY  148 (274)
T ss_pred             hHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeec
Confidence            8  777888889999999998877777655556555555555553

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.51  E-value=1.1e-06  Score=62.67  Aligned_cols=110  Identities=19%  Similarity=0.331  Sum_probs=78.4

Q ss_pred             CCc-hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcc-----ccccc----cccccchHHhHHhHHHHHHHHHHHHHHHHH
Q psy17210          1 MRT-VTNYYLVNLSLADLFMAVFNCVFNFIYMLYSH-----WPFGE----IYCKVNYFITNITVAASVFTLVAISLDRYM   70 (132)
Q Consensus         1 L~~-~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~-----~~~~~----~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~   70 (132)
                      ||+ |.|.++..+|++|++..+...+..........     .....    ........+...+...|.+....||+.|+.
T Consensus        26 mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l~~~~~~~S~WL~V~mA~iR~l  105 (318)
T PF10324_consen   26 MRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESLSDIFRRISIWLGVLMALIRYL  105 (318)
T ss_pred             hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            465 78999999999999998877777665544321     11111    112334456777788999999999999999


Q ss_pred             HHHcCCCccc----ccchhhhhehhhhHHHhHHHHHHHHHhhce
Q psy17210         71 AIMKPLQHRS----SRTKARISLVVIWLASGLLALPCVLHSTTK  110 (132)
Q Consensus        71 ~i~~p~~~~~----~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~  110 (132)
                      ++.+|.+.+.    +++.+..++.++.+.+.....+..+..+..
T Consensus       106 ~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~  149 (318)
T PF10324_consen  106 SIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIV  149 (318)
T ss_pred             HHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEE
Confidence            9999987542    455566667777888888888877655544

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.38  E-value=5e-07  Score=63.60  Aligned_cols=114  Identities=20%  Similarity=0.398  Sum_probs=79.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHh--cc--ccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCC
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLY--SH--WPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPL   76 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~--~~--~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~   76 (132)
                      +++|.+-++.+-+++|++..+............  .+  ...++..-+......+..........+.+|++|+.+|++|.
T Consensus        29 ~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~~~~~~gi~lls~nR~~ai~~P~  108 (283)
T PF10323_consen   29 FKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYFLYIQCIGIVLLSLNRYLAICFPT  108 (283)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHHHHhhhheEEeec
Confidence            468899999999999999877544333222111  11  11222234555566677778888889999999999999998


Q ss_pred             -Cccc--ccchhhhhehhhhHHHhHHHHHHHHHhhceeeCC
Q psy17210         77 -QHRS--SRTKARISLVVIWLASGLLALPCVLHSTTKIKNG  114 (132)
Q Consensus        77 -~~~~--~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~~~~~  114 (132)
                       ++.+  ++.+...++++-|+.+++.++|.....+...++.
T Consensus       109 ~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~  149 (283)
T PF10323_consen  109 SRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNE  149 (283)
T ss_pred             HHHhhhccccchhheeeeeehhhhhheeeeeccCceeeecc
Confidence             5555  4555666778889999999999766655554444

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=98.27  E-value=3.1e-05  Score=51.96  Aligned_cols=71  Identities=18%  Similarity=0.325  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcC
Q psy17210          5 TNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKP   75 (132)
Q Consensus         5 ~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p   75 (132)
                      .+-++.||.++|++.++..+.........+.-..++..|..++++....-..+.+...+||+.-|..+.+|
T Consensus        36 R~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~  106 (201)
T PF11710_consen   36 RHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRP  106 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45689999999999998755544444444444456789999999999999999999999999999999988

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=97.64  E-value=0.00053  Score=48.87  Aligned_cols=100  Identities=18%  Similarity=0.268  Sum_probs=73.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      +|+|.+-++.-++++|++..+.....   . ...+...++..|.+++++..++..++.+=.++||++=|..+.+..  ..
T Consensus        37 ~r~~~~rli~yl~~~~ll~~v~~~~~---~-~~~~~~~~s~lC~~Qafliq~f~~as~lWt~~iA~nly~~~~~~~--~~  110 (303)
T PF05462_consen   37 LRKPINRLIFYLSIANLLTNVASMIM---T-LSPSAGENSFLCQFQAFLIQFFMLASFLWTLCIAFNLYLTFVKRY--DE  110 (303)
T ss_pred             hCccHHHHHHHHHHHHHHHHHHHHHH---H-hcccCCCCCcchhhHhHHHHHhhHHHHHHHHHHHHHhhheeEEcC--cc
Confidence            58889999999999999877543222   1 223334457889999999999999998778899999998887642  23


Q ss_pred             ccchhhhhehhhhHHHhHHHHHHHHH
Q psy17210         81 SRTKARISLVVIWLASGLLALPCVLH  106 (132)
Q Consensus        81 ~~~~~~~~~~~iw~~s~~~~~~~~~~  106 (132)
                      .+|.-+...+..|.++++.++.+...
T Consensus       111 ~~k~e~~Y~l~~wGiPli~a~i~l~~  136 (303)
T PF05462_consen  111 LEKLEKYYHLVCWGIPLIPAVIPLIG  136 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33444556678899999887766543

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.43  E-value=0.00047  Score=48.15  Aligned_cols=98  Identities=19%  Similarity=0.315  Sum_probs=68.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHH-cCCCccc
Q psy17210          2 RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIM-KPLQHRS   80 (132)
Q Consensus         2 ~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~-~p~~~~~   80 (132)
                      .+|.|..+.+||++|.+..+.-........... ..+++..||...|..-.....++.+...++.  |.||. .|...+.
T Consensus         8 ~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~~-~~~~d~gCK~v~Y~~RV~RglSictTCLLSv--fQAItISP~~s~w   84 (265)
T PF03402_consen    8 LKPIDLILIHLALANILVLLSRGIPQTMAFFGW-KFFDDIGCKIVFYIYRVARGLSICTTCLLSV--FQAITISPSNSRW   84 (265)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc-ccCCCceeeeeeeehHHhchhhHHhhhHHHH--HhhEEEecCCchh
Confidence            368999999999999988765332222222222 2368999999999999999999999999999  77776 5643221


Q ss_pred             ------ccchhhhhehhhhHHHhHHHHH
Q psy17210         81 ------SRTKARISLVVIWLASGLLALP  102 (132)
Q Consensus        81 ------~~~~~~~~~~~iw~~s~~~~~~  102 (132)
                            .+|.....+...|++.......
T Consensus        85 ~~lK~k~pk~i~~~~~~~Wilnlli~~~  112 (265)
T PF03402_consen   85 AELKVKAPKYIGPSCLFCWILNLLININ  112 (265)
T ss_pred             hhhhhhcCCccccHHHHHHHHHHhhhcc
Confidence                  2223333445568887766543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.42  E-value=0.022  Score=40.15  Aligned_cols=78  Identities=15%  Similarity=0.112  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHh--ccccccccccccc-hHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q psy17210          7 YYLVNLSLADLFMAVFNCVFNFIYMLY--SHWPFGEIYCKVN-YFITNITVAASVFTLVAISLDRYMAIMKPLQHRSSRT   83 (132)
Q Consensus         7 ~ll~~La~~Dll~~~~~~~~~~~~~~~--~~~~~~~~~C~~~-~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~~~~   83 (132)
                      .++--....|.+.+....+........  .+.......-.+. +.-..............||+||..|+..|..|++.++
T Consensus        42 ~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~  121 (273)
T PF10316_consen   42 SLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIGWPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRK  121 (273)
T ss_pred             EeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehhhhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCc
Confidence            344456788999888665554433332  1111111111222 2223334456677788999999999999988887544


Q ss_pred             h
Q psy17210         84 K   84 (132)
Q Consensus        84 ~   84 (132)
                      +
T Consensus       122 k  122 (273)
T PF10316_consen  122 K  122 (273)
T ss_pred             c
Confidence            4

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=95.68  E-value=0.11  Score=37.41  Aligned_cols=84  Identities=15%  Similarity=0.273  Sum_probs=52.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccc------hHHhHHhHHHHHHHHHHHHHHHHHHHHcC
Q psy17210          2 RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVN------YFITNITVAASVFTLVAISLDRYMAIMKP   75 (132)
Q Consensus         2 ~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~------~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p   75 (132)
                      |+|.|-++.-|++.|+..........  ..+.   ..|...|+..      +.....+...+......++++|...+..|
T Consensus        64 k~~~ykiM~~L~i~Di~~l~~~si~t--G~l~---i~G~vfC~~P~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~  138 (313)
T PF10321_consen   64 KMSCYKIMFFLAIFDIIQLFINSIIT--GILA---IFGAVFCSYPRFIYIMGCIALGSWCGSCIICILLAINRCCELNFP  138 (313)
T ss_pred             cCcHHHHHHHHHHHHHHHHHhhhhhh--hHHH---hcCccccCCchHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            57899999999999998765321111  1111   1123455443      34455666778888889999999999987


Q ss_pred             CCccc--ccchhhhheh
Q psy17210         76 LQHRS--SRTKARISLV   90 (132)
Q Consensus        76 ~~~~~--~~~~~~~~~~   90 (132)
                      .....  ..++....+.
T Consensus       139 ~~~~~~F~g~~~~~~l~  155 (313)
T PF10321_consen  139 FKLKFLFEGKRTYIVLF  155 (313)
T ss_pred             hhhHHhhcCceEEeeeh
Confidence            55443  3344444333

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=95.57  E-value=0.081  Score=37.80  Aligned_cols=100  Identities=16%  Similarity=0.144  Sum_probs=65.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCc----
Q psy17210          3 TVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQH----   78 (132)
Q Consensus         3 ~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~----   78 (132)
                      +|.|..+.+||+++++.-..............+....+..++...+...+....+.+..+.+++--+..|...-+.    
T Consensus        42 ~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~  121 (303)
T PF05296_consen   42 SPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKIIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLW  121 (303)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHH
Confidence            5889999999999998876655444444444444445567788888888888889999999999766777643221    


Q ss_pred             --ccccchhhhhehhhhHHHhHHHHH
Q psy17210         79 --RSSRTKARISLVVIWLASGLLALP  102 (132)
Q Consensus        79 --~~~~~~~~~~~~~iw~~s~~~~~~  102 (132)
                        ++..+....++.+.++.++...++
T Consensus       122 LK~rI~~~v~~lLl~s~l~s~~~~~~  147 (303)
T PF05296_consen  122 LKRRISKVVPWLLLGSLLISFLNLLS  147 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              112222333445667777743333

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.55  E-value=0.24  Score=35.72  Aligned_cols=84  Identities=12%  Similarity=0.095  Sum_probs=52.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhHH---HHHHHHhcc----ccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHc
Q psy17210          2 RTVTNYYLVNLSLADLFMAVFNCVF---NFIYMLYSH----WPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMK   74 (132)
Q Consensus         2 ~~~~~~ll~~La~~Dll~~~~~~~~---~~~~~~~~~----~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~   74 (132)
                      |...-+++....++.++.++.....   .+..+...+    ...+...|-........+......+..++++||.+|..+
T Consensus        48 H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~  127 (324)
T PF10292_consen   48 HFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFILRIPYNFGLFLVSFTTVSLVIERTIATFF  127 (324)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4445566667777777665432222   222222211    223445566666667777788888999999999999998


Q ss_pred             CCCcccccchh
Q psy17210         75 PLQHRSSRTKA   85 (132)
Q Consensus        75 p~~~~~~~~~~   85 (132)
                      .-+|.+..+..
T Consensus       128 ~~~YE~~~~~~  138 (324)
T PF10292_consen  128 SKSYEKSGKWL  138 (324)
T ss_pred             HHHhcCCCccH
Confidence            87777654433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].

>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.31  E-value=0.0046  Score=42.31  Aligned_cols=104  Identities=17%  Similarity=0.187  Sum_probs=0.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      +|+..+....||++++++..+..+.. ...........++..|...+.....+..++..=+.+.+++-|..+..+..  +
T Consensus        31 lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~~~~C~~~a~~~hy~~la~f~Wm~~~~~~l~~~~~~~~~--~  107 (242)
T PF00002_consen   31 LRSFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTNHCLCRAIAILLHYFFLASFFWMLVEAFYLYRLLVKVFN--S  107 (242)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hcccchhhhhhhHHHHHHHHHHHhee-hhhccccccccccccchhhhhHhHHHHHHHHHHHHHHHHHhheeEEEeec--c
Confidence            35667778889999988766532211 11111111111223599999988888888887788999999998877632  2


Q ss_pred             ccchhhhhehhhhHHHhHHHHHHHHHh
Q psy17210         81 SRTKARISLVVIWLASGLLALPCVLHS  107 (132)
Q Consensus        81 ~~~~~~~~~~~iw~~s~~~~~~~~~~~  107 (132)
                      .+++.+...+..|.++.+.........
T Consensus       108 ~~~~~~~~~~~gwg~P~~iv~i~~~~~  134 (242)
T PF00002_consen  108 SRRRFWWYYLIGWGIPALIVVISVAVN  134 (242)
T ss_dssp             ---------------------------
T ss_pred             cchhhheeeeeeecCcceeeeeeeeec
Confidence            234445566778998888777666555

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.

>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.02  E-value=0.021  Score=36.64  Aligned_cols=98  Identities=16%  Similarity=0.211  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhcccccc---ccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc--cc
Q psy17210          8 YLVNLSLADLFMAVFNCVFNFIYMLYSHWPFG---EIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS--SR   82 (132)
Q Consensus         8 ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~---~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~--~~   82 (132)
                      ++.++++++++..+.............+...+   +...+.......++-....+...+|+++|-..+.+|++...  +.
T Consensus         6 YI~~M~i~gi~~~~~~~v~~~~~~~~~~~~Y~~yr~~~G~~~TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~   85 (153)
T PF03383_consen    6 YIYNMIICGIIDKFFIFVDFWIPLFLPDEGYEEYRQFFGKEVTLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSD   85 (153)
T ss_pred             EEeHHHHhhHHHHHHHHhhhhhhhccChhHHHHHHHHhCCEEeeeehHHHHHHHHHHHHHHHhheEEEEecCCCcccccc
Confidence            34567777776665432222222222211111   12234444455566667778888999999999999998844  66


Q ss_pred             chhhhhehhhhHHHhHHHHHHHH
Q psy17210         83 TKARISLVVIWLASGLLALPCVL  105 (132)
Q Consensus        83 ~~~~~~~~~iw~~s~~~~~~~~~  105 (132)
                      +|...-+..+.+..+...+.|.+
T Consensus        86 ~kl~~YC~~i~i~~~i~LlIPy~  108 (153)
T PF03383_consen   86 KKLWIYCGIIAILSFISLLIPYF  108 (153)
T ss_pred             chhHHHHHHHHHHHHHHHHhhcC
Confidence            77766677766666666655554

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].

>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.96  E-value=0.091  Score=36.60  Aligned_cols=60  Identities=17%  Similarity=0.374  Sum_probs=42.5

Q ss_pred             cccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCcccccchhh-hhehhhhHHHhHHH
Q psy17210         41 IYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRSSRTKAR-ISLVVIWLASGLLA  100 (132)
Q Consensus        41 ~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~~~~~~~-~~~~~iw~~s~~~~  100 (132)
                      ...++..++...+..+...+...++++|+-++..|.++.+..++.. ..++.+.+.++...
T Consensus        79 ~~l~~~~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~~~~i~~i~~~p~~~~  139 (275)
T PF02118_consen   79 FFLNIFYFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYYWIIIIIIFLLPFSFT  139 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhhheeeeeehhHHHH
Confidence            3455666677778888889999999999999999998888444333 34444455554443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane

>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=92.59  E-value=0.35  Score=33.27  Aligned_cols=45  Identities=11%  Similarity=0.204  Sum_probs=33.3

Q ss_pred             ccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCcccccch
Q psy17210         40 EIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRSSRTK   84 (132)
Q Consensus        40 ~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~~~~~   84 (132)
                      +..++..........+.++.....+++||++|....-+|.+++..
T Consensus        82 ~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r~~  126 (236)
T PF02175_consen   82 PTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTRTL  126 (236)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCcee
Confidence            344555566777788888899999999999999876556544443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=92.21  E-value=1.7  Score=30.81  Aligned_cols=93  Identities=18%  Similarity=0.263  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccc-----------ccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHH
Q psy17210          5 TNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWP-----------FGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIM   73 (132)
Q Consensus         5 ~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~-----------~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~   73 (132)
                      ..+++.|-|+.|++.+....... ......+..           .++..|.........+...+.+++..--.-||..+.
T Consensus        34 ~~~~l~~~~~~~~~~~~~~~~~q-~R~i~~~~~~~~~~~GpC~~~~~~~C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~  112 (292)
T PF10317_consen   34 YSILLLNTAIFDLISIISAFLTQ-PRIIPNGTSIAVISYGPCRYFGPWFCFFCYHIMLHFSIHSGWSIILSFYYRYYILR  112 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-hhccCCCCcEEEEeeecceecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45799999999999876433222 222222211           234445544445555556666666666667999998


Q ss_pred             cCCCcccccchhhhhehhhhHHHhHHHH
Q psy17210         74 KPLQHRSSRTKARISLVVIWLASGLLAL  101 (132)
Q Consensus        74 ~p~~~~~~~~~~~~~~~~iw~~s~~~~~  101 (132)
                      ++..   ++++....+...+..++...+
T Consensus       113 ~~~~---~~~~~i~~~~l~~~p~~~~~i  137 (292)
T PF10317_consen  113 NPSP---SRKRIIFICILIYIPSFSMLI  137 (292)
T ss_pred             CCCC---chhHHHHHHHHHHHHHHHHHH
Confidence            6522   444444455555665555544

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=85.96  E-value=9.7  Score=27.68  Aligned_cols=42  Identities=24%  Similarity=0.397  Sum_probs=32.1

Q ss_pred             ccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCcc
Q psy17210         38 FGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHR   79 (132)
Q Consensus        38 ~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~   79 (132)
                      +....|.........+.....+...++.+||-.|-..|-.+.
T Consensus        96 f~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~  137 (328)
T PF02117_consen   96 FTSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYYS  137 (328)
T ss_pred             eecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Confidence            345567777777777777778899999999999998874443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity

Probab=81.13  E-value=10  Score=27.13  Aligned_cols=104  Identities=10%  Similarity=0.238  Sum_probs=60.4

Q ss_pred             hhHHHHHHHHHHHHHHHHH----HhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCcc
Q psy17210          4 VTNYYLVNLSLADLFMAVF----NCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHR   79 (132)
Q Consensus         4 ~~~~ll~~La~~Dll~~~~----~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~   79 (132)
                      +..+|+..|.++-.+.+..    -+|..+......+...+ ..-.+..+....+.++-.++=..+|++|..-..  +|+.
T Consensus        48 ~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~~s-~~f~~~Sy~idf~h~siLfsNlviaIqR~fVFF--fr~~  124 (305)
T PF04789_consen   48 KFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFVQS-ELFIFMSYLIDFCHYSILFSNLVIAIQRFFVFF--FRNL  124 (305)
T ss_pred             hHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHhcc-chhhHHHHHHHHHHHHHHHHHHHHHHhhheeee--ehhh
Confidence            3456777777776665542    23555544443332222 233566677788888888888999999976553  1222


Q ss_pred             c----ccchhhhhehhhhHHHhHHHHHHHHHhhce
Q psy17210         80 S----SRTKARISLVVIWLASGLLALPCVLHSTTK  110 (132)
Q Consensus        80 ~----~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~  110 (132)
                      .    .+.-..+-...+|+++........-..-.+
T Consensus       125 t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y  159 (305)
T PF04789_consen  125 TDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRY  159 (305)
T ss_pred             hhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence            1    122233345678888887765555433333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
2ks9_A	364	Solution Conformation Of Substance P In Water Compl		1e-23
3d4s_A	490	Cholesterol Bound Form Of Human Beta2 Adrenergic Re		3e-15
3p0g_A	501	Structure Of A Nanobody-Stabilized Active State Of		5e-15
2rh1_A	500	High Resolution Crystal Structure Of Human B2-Adren		5e-15
2r4s_A	342	Crystal Structure Of The Human Beta2 Adrenoceptor L		6e-15
2r4r_A	365	Crystal Structure Of The Human Beta2 Adrenoceptor L		6e-15
3sn6_R	514	Crystal Structure Of The Beta2 Adrenergic Receptor-		6e-15
3kj6_A	366	Crystal Structure Of A Methylated Beta2 Adrenergic		6e-15
4gbr_A	309	N-terminal T4 Lysozyme Fusion Facilitates Crystalli		7e-15
4dkl_A	464	Crystal Structure Of The Mu-Opioid Receptor Bound T		1e-14
3pds_A	458	Irreversible Agonist-Beta2 Adrenoceptor Complex Len		2e-14
4ea3_B	434	Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI		1e-13
4djh_A	480	Structure Of The Human Kappa Opioid Receptor In Com		1e-13
4ej4_A	461	Structure Of The Delta Opioid Receptor Bound To Nal		3e-13
4daj_A	479	Structure Of The M3 Muscarinic Acetylcholine Recept		2e-12
3uon_A	467	Structure Of The Human M2 Muscarinic Acetylcholine		1e-11
3rze_A	452	Structure Of The Human Histamine H1 Receptor In Com		8e-11
2y00_B	315	Turkey Beta1 Adrenergic Receptor With Stabilising M		2e-10
2vt4_A	313	Turkey Beta1 Adrenergic Receptor With Stabilising M		2e-10
4grv_A	510	The Crystal Structure Of The Neurotensin Receptor N		7e-09
4a4m_A	349	Crystal Structure Of The Light-Activated Constituti		9e-08
2j4y_A	349	Crystal Structure Of A Rhodopsin Stabilizing Mutant		1e-07
3c9m_A	348	Structure Of A Mutant Bovine Rhodopsin In Hexagonal		1e-07
2x72_A	349	Crystal Structure Of The Constitutively Active E113		1e-07
3oax_A	349	Crystal Structure Of Bovine Rhodopsin With Beta-Ion		1e-07
1jfp_A	348	Structure Of Bovine Rhodopsin (Dark Adapted) Length		1e-07
2z73_A	448	Crystal Structure Of Squid Rhodopsin Length = 448		2e-07
2ziy_A	372	Crystal Structure Of Squid Rhodopsin Length = 372		2e-07
3oe6_A	508	Crystal Structure Of The Cxcr4 Chemokine Receptor I		5e-07
3oe0_A	499	Crystal Structure Of The Cxcr4 Chemokine Receptor I		5e-07
3odu_A	502	The 2.5 A Structure Of The Cxcr4 Chemokine Receptor		5e-07
3pbl_A	481	Structure Of The Human Dopamine D3 Receptor In Comp		1e-06
3vw7_A	484	Crystal Structure Of Human Protease-Activated Recep		3e-05
2ydo_A	325	Thermostabilised Human A2a Receptor With Adenosine		5e-05
3vg9_A	326	Crystal Structure Of Human Adenosine A2a Receptor W		8e-05
4eiy_A	447	Crystal Structure Of The Chimeric Protein Of A2aar-		1e-04
3eml_A	488	The 2.6 A Crystal Structure Of A Human A2a Adenosin		2e-04
3pwh_A	329	Thermostabilised Adenosine A2a Receptor Length = 32		3e-04

>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364

Iteration: 1
 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 74/110 (67%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           MRTVTNY+LVNL+ A+  MA FN V NF Y +++ W +G  YCK + F     V AS+++
Sbjct: 63  MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122
Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTK 110
           + A++ DRYMAI+ PLQ R S T  ++ + VIW+ + LLA P   +STT+
Sbjct: 123 MTAVAFDRYMAIIHPLQPRLSATATKVVICVIWVLALLLAFPQGYYSTTE 172

>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 69/109 (63%), Gaps = 3/109 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           ++TVTNY++ +L+ ADL M +    F   ++L   W FG  +C+    I  + V AS++T
Sbjct: 72  LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWT 131
Query: 61  LVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLA-LPCVLH 106
           L  I++DRY AI  P +++S  ++ KAR+ ++++W+ SGL + LP  +H
Sbjct: 132 LCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 180

>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           ++TVTNY++ +L+ ADL M +    F   ++L   W FG  +C+    I  + V AS+ T
Sbjct: 72  LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 131
Query: 61  LVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLA-LPCVLH 106
           L  I++DRY AI  P +++S  ++ KAR+ ++++W+ SGL + LP  +H
Sbjct: 132 LCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 180

>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           ++TVTNY++ +L+ ADL M +    F   ++L   W FG  +C+    I  + V AS+ T
Sbjct: 71  LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 130
Query: 61  LVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLA-LPCVLH 106
           L  I++DRY AI  P +++S  ++ KAR+ ++++W+ SGL + LP  +H
Sbjct: 131 LCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 179

>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           ++TVTNY++ +L+ ADL M +    F   ++L   W FG  +C+    I  + V AS+ T
Sbjct: 41  LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 100
Query: 61  LVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLA-LPCVLH 106
           L  I++DRY AI  P +++S  ++ KAR+ ++++W+ SGL + LP  +H
Sbjct: 101 LCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 149

>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           ++TVTNY++ +L+ ADL M +    F   ++L   W FG  +C+    I  + V AS+ T
Sbjct: 64  LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 123
Query: 61  LVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLA-LPCVLH 106
           L  I++DRY AI  P +++S  ++ KAR+ ++++W+ SGL + LP  +H
Sbjct: 124 LCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 172

>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           ++TVTNY++ +L+ ADL M +    F   ++L   W FG  +C+    I  + V AS+ T
Sbjct: 213 LQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIET 272
Query: 61  LVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLA-LPCVLH 106
           L  I++DRY AI  P +++S  ++ KAR+ ++++W+ SGL + LP  +H
Sbjct: 273 LCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 321

>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           ++TVTNY++ +L+ ADL M +    F   ++L   W FG  +C+    I  + V AS+ T
Sbjct: 65  LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 124
Query: 61  LVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLA-LPCVLH 106
           L  I++DRY AI  P +++S  ++ KAR+ ++++W+ SGL + LP  +H
Sbjct: 125 LCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 173

>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309

Iteration: 1
 Score = 75.9 bits (185), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           ++TVTNY++ +L+ ADL M +    F   ++L   W FG  +C+    I  + V AS+ T
Sbjct: 36  LQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIET 95
Query: 61  LVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLA-LPCVLH 106
           L  I++DRY AI  P +++S  ++ KAR+ ++++W+ SGL + LP  +H
Sbjct: 96  LCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 144

>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           M+T TN Y+ NL+LAD  +A     F  +  L   WPFG I CK+   I    +  S+FT
Sbjct: 48  MKTATNIYIFNLALADA-LATSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFT 106
Query: 61  LVAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALPCVLHSTTKIKNGDL 116
           L  +S+DRY+A+  P++    RT   A+I  V  W+ S  + LP +  +TTK + G +
Sbjct: 107 LCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGSI 164

>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           ++TVTNY++ +L+ ADL M +    F    +L   W FG  +C+    I  + V AS+ T
Sbjct: 40  LQTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTFGNFWCEFWTSIDVLCVTASIET 99
Query: 61  LVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLA-LPCVLH 106
           L  I++DRY AI  P +++S  ++ KAR+ ++++W+ SGL + LP  +H
Sbjct: 100 LCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 148

>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 12/142 (8%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           M+T TN Y+ NL+LAD  + +    F    +L   WPFG   CK    I    +  S FT
Sbjct: 156 MKTATNIYIFNLALADT-LVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFT 214
Query: 61  LVAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALPCVLHSTTKIKNGDL-- 116
           L A+S+DRY+AI  P++    RT  KA+   V IW  + ++ +P  +  + ++++ ++  
Sbjct: 215 LTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEIEC 274
Query: 117 -------AGQWITSFTLCSTLY 131
                     W   F +C  L+
Sbjct: 275 LVEIPTPQDYWGPVFAICIFLF 296

>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           M+T TN Y+ NL+LAD  +       + +Y++ S WPFG++ CK+   I    +  S+FT
Sbjct: 53  MKTATNIYIFNLALADALVTTTMPFQSTVYLMNS-WPFGDVLCKIVLSIDYYNMFTSIFT 111
Query: 61  LVAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALPCVLHSTTKIKN 113
           L  +S+DRY+A+  P++    RT  KA+I  + IWL S  + +  ++   TK++ 
Sbjct: 112 LTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGISAIVLGGTKVRE 166

>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           ++T TN Y+ NL+LAD  +A     F     L   WPFGE+ CK    I    +  S+FT
Sbjct: 45  LKTATNIYIFNLALADA-LATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFT 103
Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISL--VVIWLASGLLALPCVLHSTTKIKNG 114
           L  +S+DRY+A+  P++    RT A+  L  + IW+ +  + +P ++ + T+ ++G
Sbjct: 104 LTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMVMAVTQPRDG 159

>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           ++TV NY+L++L+ ADL + V +      Y++ + W  G + C +   I  +   ASV  
Sbjct: 43  LKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLSIDYVASNASVMN 102
Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVV--IWLASGLLALPCVL 105
           L+ IS DRY +I +PL +R+ RT  R  +++   W+ S +L  P +L
Sbjct: 103 LLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVLWAPAIL 149

>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           ++TV NY+L +L+ ADL + VF+     +Y +  +WP G + C +   +  +   ASV  
Sbjct: 54  LQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMN 113
Query: 61  LVAISLDRYMAIMKPLQHRSSRTK--ARISLVVIWLASGLLALPCVL 105
           L+ IS DRY  + KPL +   RT   A + +   W+ S +L  P +L
Sbjct: 114 LLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAIL 160

>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           + TV N Y+V+LS+ADL +       N +Y+L S W  G   C     +  +   AS+F+
Sbjct: 39  LHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFS 98
Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVI--WLASGLLALP 102
           +  + +DRY ++ +PL++   RTK R S  ++  W  S L  +P
Sbjct: 99  VFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIP 142

>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           ++T+TN ++ +L+ ADL + +    F    ++   W +G   C++   +  + V AS+ T
Sbjct: 42  LQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIET 101
Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVV--IWLASGLLA-LPCVLH 106
           L  I++DRY+AI  P +++S  T+AR  +++  +W  S L++ LP ++H
Sbjct: 102 LCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMH 150

>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           ++T+TN ++ +L+ ADL + +    F    ++   W +G   C++   +  + V AS+ T
Sbjct: 42  LQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIET 101
Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVV--IWLASGLLA-LPCVLH 106
           L  I++DRY+AI  P +++S  T+AR  +++  +W  S L++ LP ++H
Sbjct: 102 LCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMH 150

>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In Complex With Neurotensin (8-13) Length = 510

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 25  VFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS--SR 82
           ++NFI+ ++  W FG+  C+  YF+ +    A+   + ++S+ RY+AI  P + ++  SR
Sbjct: 93  LYNFIW-VHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSR 151
Query: 83  TKARISLVVIWLASGLLALPCVLHSTTKIKNGD 115
           ++ +  +  IWLAS LLA+P +     + ++ D
Sbjct: 152 SRTKKFISAIWLASALLAIPMLFTMGLQNRSAD 184

>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEIYCKVNYFITNITVAASVF 59
           +RT  NY L+NL++ADLFM VF      +Y  L+ ++ FG   C +  F   +    +++
Sbjct: 69  LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW 127
Query: 60  TLVAISLDRYMAIMKPLQH-RSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
           +LV ++++RY+ + KP+ + R     A + +   W+ +   A P ++  +  I  G
Sbjct: 128 SLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEG 183

>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEIYCKVNYFITNITVAASVF 59
           +RT  NY L+NL++ADLFM VF      +Y  L+ ++ FG   C +  F   +    +++
Sbjct: 69  LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW 127
Query: 60  TLVAISLDRYMAIMKPLQH-RSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
           +LV ++++RY+ + KP+ + R     A + +   W+ +   A P ++  +  I  G
Sbjct: 128 SLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEG 183

>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEIYCKVNYFITNITVAASVF 59
           +RT  NY L+NL++ADLFM VF      +Y  L+ ++ FG   C +  F   +    +++
Sbjct: 68  LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW 126
Query: 60  TLVAISLDRYMAIMKPLQH-RSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
           +LV ++++RY+ + KP+ + R     A + +   W+ +   A P ++  +  I  G
Sbjct: 127 SLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEG 182

>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEIYCKVNYFITNITVAASVF 59
           +RT  NY L+NL++ADLFM VF      +Y  L+ ++ FG   C +  F   +    +++
Sbjct: 69  LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLQGFFATLGGEIALW 127
Query: 60  TLVAISLDRYMAIMKPLQH-RSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
           +LV ++++RY+ + KP+ + R     A + +   W+ +   A P ++  +  I  G
Sbjct: 128 SLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEG 183

>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEIYCKVNYFITNITVAASVF 59
           +RT  NY L+NL++ADLFM VF      +Y  L+ ++ FG   C +  F   +    +++
Sbjct: 69  LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW 127
Query: 60  TLVAISLDRYMAIMKPLQH-RSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
           +LV ++++RY+ + KP+ + R     A + +   W+ +   A P ++  +  I  G
Sbjct: 128 SLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEG 183

>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEIYCKVNYFITNITVAASVF 59
           +RT  NY L+NL++ADLFM VF      +Y  L+ ++ FG   C +  F   +    +++
Sbjct: 68  LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW 126
Query: 60  TLVAISLDRYMAIMKPLQH-RSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
           +LV ++++RY+ + KP+ + R     A + +   W+ +   A P ++  +  I  G
Sbjct: 127 SLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEG 182

>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYS----HWPFGEIYCKVNYFITNITVAA 56
           ++T  N +++NL+ +D     F+ V  F  M  S     W FG   CKV  FI  I    
Sbjct: 65  LQTPANMFIINLAFSDF---TFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFM 121
Query: 57  SVFTLVAISLDRYMAIMKPL--QHRSSRTKARISLVVIWLASGLLAL 101
           S+ T+  IS+DRY  I +P+    + S  +A I ++ +WL S L A+
Sbjct: 122 SIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAI 168

>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYS----HWPFGEIYCKVNYFITNITVAA 56
           ++T  N +++NL+ +D     F+ V  F  M  S     W FG   CKV  FI  I    
Sbjct: 64  LQTPANMFIINLAFSDF---TFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFM 120
Query: 57  SVFTLVAISLDRYMAIMKPL--QHRSSRTKARISLVVIWLASGLLAL 101
           S+ T+  IS+DRY  I +P+    + S  +A I ++ +WL S L A+
Sbjct: 121 SIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAI 167

>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Small Molecule Antagonist It1t In I222 Spacegroup Length = 508

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           +R++T+ Y ++LS+ADL   V    F  +  + ++W FG   CK  + I  + + +SV+ 
Sbjct: 79  LRSMTDKYRLHLSVADLLF-VITLPFWAVDAV-ANWYFGNFLCKAVHVIYTVNLYSSVWI 136
Query: 61  LVAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALP 102
           L  ISLDRY+AI+     +  R     ++  V +W+ + LL +P
Sbjct: 137 LAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIP 180

>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Cyclic Peptide Antagonist Cvx15 Length = 499

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           +R++T+ Y ++LS+ADL   V    F  +  + ++W FG   CK  + I  + + +SV+ 
Sbjct: 79  LRSMTDKYRLHLSVADLLF-VITLPFWAVDAV-ANWYFGNFLCKAVHVIYTVNLYSSVWI 136
Query: 61  LVAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALP 102
           L  ISLDRY+AI+     +  R     ++  V +W+ + LL +P
Sbjct: 137 LAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIP 180

>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In Complex With Small Molecule Antagonist It1t Length = 502

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           +R++T+ Y ++LS+ADL   V    F  +  + ++W FG   CK  + I  + + +SV+ 
Sbjct: 79  LRSMTDKYRLHLSVADLLF-VITLPFWAVDAV-ANWYFGNFLCKAVHVIYTVNLYSSVWI 136
Query: 61  LVAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALP 102
           L  ISLDRY+AI+     +  R     ++  V +W+ + LL +P
Sbjct: 137 LAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIP 180

>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 10/110 (9%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLY---SHWPFGEIYCKVNYFITNITVAAS 57
           ++T TNY +V+L++ADL +A    V  ++  L      W F  I C V   +  +   AS
Sbjct: 69  LQTTTNYLVVSLAVADLLVATL--VMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTAS 126
Query: 58  VFTLVAISLDRYMAIMKPL--QHRSSRTKAR---ISLVVIWLASGLLALP 102
           ++ L AIS+DRY A++ P+  QH + ++  R   + +  +W+ +  ++ P
Sbjct: 127 IWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCP 176

>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1 (Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom Length = 484

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
Query: 8   YLVNLSLAD-LFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNI---TVAASVFTLVA 63
           Y+++L+ AD LF++V     ++ Y   S W FG   C+   F+T      + AS+  +  
Sbjct: 58  YMLHLATADVLFVSVLPFKISY-YFSGSDWQFGSELCR---FVTAAFYCNMYASILLMTV 113
Query: 64  ISLDRYMAIMKPLQHRSSRTKARISL--VVIWLASGLLALPCVLHSTT 109
           IS+DR++A++ P+Q  S RT  R S   + IW  +    +P +L   T
Sbjct: 114 ISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLLKEQT 161

>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNF-IYMLYSHWPFGEIYCKVNYFITNITVAASVF 59
           ++ VTNY++V+ + AD+ + V    F   I   +     G ++  +  F+  +T A+S+F
Sbjct: 37  LQNVTNYFVVSAAAADILVGVLAIPFAIAISTGFCAACHGCLF--IACFVLVLT-ASSIF 93
Query: 60  TLVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLALPCVL--HSTTKIKNGD 115
           +L+AI++DRY+AI  PL++    + T+A+  + + W+ S  + L  +L  ++  + K G 
Sbjct: 94  SLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGK 153
Query: 116 LAGQ 119
              Q
Sbjct: 154 AHSQ 157

>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNF-IYMLYSHWPFGEIYCKVNYFITNITVAASVF 59
           ++ VTNY++V+L+ AD+ + V    F   I   +     G ++  +  F+  +T  +S+F
Sbjct: 37  LQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLF--IACFVLVLT-QSSIF 93
Query: 60  TLVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLALPCVL--HSTTKIKNGD 115
           +L+AI++DRY+AI  PL++    + T+A+  + + W+ S  + L  +L  ++  + K G 
Sbjct: 94  SLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGK 153
Query: 116 LAGQ 119
              Q
Sbjct: 154 QHSQ 157

>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 61/104 (58%), Gaps = 6/104 (5%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNF-IYMLYSHWPFGEIYCKVNYFITNITVAASVF 59
           ++ VTNY++V+L+ AD+ + V    F   I   +     G ++  +  F+  +T  +S+F
Sbjct: 62  LQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLF--IACFVLVLT-QSSIF 118
Query: 60  TLVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLAL 101
           +L+AI++DRY+AI  PL++    + T+A+  + + W+ S  + L
Sbjct: 119 SLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGL 162

>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 61/104 (58%), Gaps = 6/104 (5%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNF-IYMLYSHWPFGEIYCKVNYFITNITVAASVF 59
           ++ VTNY++V+L+ AD+ + V    F   I   +     G ++  +  F+  +T  +S+F
Sbjct: 52  LQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLF--IACFVLVLT-QSSIF 108
Query: 60  TLVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLAL 101
           +L+AI++DRY+AI  PL++    + T+A+  + + W+ S  + L
Sbjct: 109 SLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGL 152

>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNF-IYMLYSHWPFGEIYCKVNYFITNITVAASVF 59
           ++ VTNY++V+L+ AD+ + V    F   I   +     G ++  +  F+  +   +S+F
Sbjct: 37  LQNVTNYFVVSLAAADILVGVLAIPFAITISTGFCAACHGCLF--IACFVL-VLAQSSIF 93
Query: 60  TLVAISLDRYMAIMKPLQHRSSRTKARISLVV 91
           +L+AI++DRY+AI  PL++    T  R + ++
Sbjct: 94  SLLAIAIDRYIAIAIPLRYNGLVTGTRAAGII 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	1e-43
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	4e-37
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	3e-35
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	2e-28
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	1e-25
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	4e-25
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	6e-25
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	1e-24
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	2e-24
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	3e-24
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	6e-24
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-23
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	2e-22
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	2e-21
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	9e-21
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	9e-07

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score =  145 bits (367), Expect = 1e-43
 Identities = 52/114 (45%), Positives = 74/114 (64%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           MRTVTNY+LVNL+ A+  MA FN V NF Y +++ W +G  YCK + F     V AS+++
Sbjct: 63  MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
           + A++ DRYMAI+ PLQ R S T  ++ + VIW+ + LLA P   +STT+    
Sbjct: 123 MTAVAFDRYMAIIHPLQPRLSATATKVVICVIWVLALLLAFPQGYYSTTETMPS 176

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score =  123 bits (310), Expect = 3e-35
 Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 1/110 (0%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           +RT  NY L+NL++ADLFM            L+ ++ FG   C +  F   +    ++++
Sbjct: 69  LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 128

Query: 61  LVAISLDRYMAIMKPLQ-HRSSRTKARISLVVIWLASGLLALPCVLHSTT 109
           LV ++++RY+ + KP+   R     A + +   W+ +   A P ++  + 
Sbjct: 129 LVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSR 178

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score =  107 bits (267), Expect = 2e-28
 Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 3/116 (2%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           M+T TN Y+ NL+LAD         F  +  L   WPFG I CK+   I    +  S+FT
Sbjct: 48  MKTATNIYIFNLALADALA-TSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFT 106

Query: 61  LVAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALPCVLHSTTKIKNG 114
           L  +S+DRY+A+  P++    RT   A+I  V  W+ S  + LP +  +TTK + G
Sbjct: 107 LCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQG 162

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 99.0 bits (246), Expect = 1e-25
 Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 4/109 (3%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITV-AASVF 59
           ++TV NY+L +L+ ADL + VF+     +Y +  +WP G + C + +   +  V  ASV 
Sbjct: 54  LQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDL-WLALDYVVSNASVM 112

Query: 60  TLVAISLDRYMAIMKPLQHRSSRTKARISL--VVIWLASGLLALPCVLH 106
            L+ IS DRY  + KPL +   RT     +     W+ S +L  P +L 
Sbjct: 113 NLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILF 161

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 97.7 bits (243), Expect = 4e-25
 Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 6/117 (5%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNF-IYMLYSHWPFGEIYCKVNYFITNITVAASVF 59
           +R++T+ Y ++LS+ADL   +F     F      ++W FG   CK  + I  + + +SV+
Sbjct: 79  LRSMTDKYRLHLSVADL---LFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVW 135

Query: 60  TLVAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALPCVLHSTTKIKNG 114
            L  ISLDRY+AI+     +  R     ++  V +W+ + LL +P  + +     + 
Sbjct: 136 ILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADD 192

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 97.5 bits (242), Expect = 6e-25
 Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 4/107 (3%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           ++ VTNY++V+L+ AD+ + V      F   + + +      C        +   +S+F+
Sbjct: 52  LQNVTNYFVVSLAAADIAVGVL--AIPFAITISTGFCAACHGCLFIACFVLVLTQSSIFS 109

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISL--VVIWLASGLLALPCVL 105
           L+AI++DRY+AI  PL++    T  R      + W+ S  + L  +L
Sbjct: 110 LLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPML 156

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 96.5 bits (240), Expect = 1e-24
 Identities = 38/103 (36%), Positives = 62/103 (60%), Gaps = 2/103 (1%)

Query: 2   RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTL 61
           +TVTNY++ +L+ ADL M +    F   ++L   W FG  +C+    I  + V AS+ TL
Sbjct: 214 QTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETL 273

Query: 62  VAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALP 102
             I++DRY AI  P +++S  T  KAR+ ++++W+ SGL +  
Sbjct: 274 CVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFL 316

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 96.3 bits (239), Expect = 2e-24
 Identities = 35/105 (33%), Positives = 62/105 (59%), Gaps = 4/105 (3%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNIT-VAASVF 59
           ++TVTNY++ +L+ ADL M +    F   ++L   W FG  +C+  +   ++  V AS+ 
Sbjct: 71  LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEF-WTSIDVLCVTASIE 129

Query: 60  TLVAISLDRYMAIMKPLQHRSSRTKARISL--VVIWLASGLLALP 102
           TL  I++DRY AI  P +++S  TK +  +  +++W+ SGL +  
Sbjct: 130 TLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFL 174

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 95.1 bits (236), Expect = 3e-24
 Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 4/105 (3%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITV-AASVF 59
           + TV N Y+V+LS+ADL +       N +Y+L S W  G   C   +   +     AS+F
Sbjct: 39  LHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLF-WLSMDYVASTASIF 97

Query: 60  TLVAISLDRYMAIMKPLQHRSSRTKARISL--VVIWLASGLLALP 102
           ++  + +DRY ++ +PL++   RTK R S   +  W  S L  +P
Sbjct: 98  SVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIP 142

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 94.4 bits (234), Expect = 6e-24
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 4/104 (3%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           ++ VTNY++V+L+ AD+ + V      F   + + +      C        +   +S+F+
Sbjct: 62  LQNVTNYFVVSLAAADIAVGVL--AIPFAITISTGFCAACHGCLFIACFVLVLTQSSIFS 119

Query: 61  LVAISLDRYMAIMKPLQHRSSRTKARISL--VVIWLASGLLALP 102
           L+AI++DRY+AI  PL++    T  R      + W+ S  + L 
Sbjct: 120 LLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLT 163

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 93.5 bits (232), Expect = 1e-23
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 3/109 (2%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIY-MLYSHWPFGEIYCKVNYFITNITVAASVF 59
           ++T  N +++NL+ +D   ++ N             W FG   CKV  FI  I    S+ 
Sbjct: 65  LQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIM 124

Query: 60  TLVAISLDRYMAIMKPLQ--HRSSRTKARISLVVIWLASGLLALPCVLH 106
           T+  IS+DRY  I +P+    + S  +A I ++ +WL S L A+  +  
Sbjct: 125 TMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFG 173

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 88.6 bits (220), Expect = 2e-22
 Identities = 29/106 (27%), Positives = 60/106 (56%), Gaps = 2/106 (1%)

Query: 2   RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTL 61
           +T+TN ++ +L+ ADL + +    F    ++   W +G   C++   +  + V AS+ TL
Sbjct: 43  QTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETL 102

Query: 62  VAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALPCVL 105
             I++DRY+AI  P +++S  T  +A++ +  +W  S L++   ++
Sbjct: 103 CVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIM 148

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 87.5 bits (216), Expect = 2e-21
 Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 6/111 (5%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSH-WPFGEIYCKVNYFITNITVAASVF 59
           ++T TNY +V+L++ADL +A     +     +    W F  I C V   +  +   AS++
Sbjct: 69  LQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIW 128

Query: 60  TLVAISLDRYMAIMKPLQHRSSRTK-----ARISLVVIWLASGLLALPCVL 105
            L AIS+DRY A++ P+ ++    +       + +  +W+ +  ++ P + 
Sbjct: 129 NLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLF 179

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 85.7 bits (211), Expect = 9e-21
 Identities = 22/105 (20%), Positives = 49/105 (46%), Gaps = 2/105 (1%)

Query: 2   RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTL 61
                Y++ NL+L+DL   V     N +    + +        +      + ++ASVF+L
Sbjct: 95  HRPMYYFIGNLALSDLLAGVAY-TANLLLSGATTYKLTPAQWFLREGSMFVALSASVFSL 153

Query: 62  VAISLDRYMAIMKPLQHRS-SRTKARISLVVIWLASGLLALPCVL 105
           +AI+++RY+ ++K   H   +  +  + +   W+ S +L    ++
Sbjct: 154 LAIAIERYITMLKMKLHNGSNNFRLFLLISACWVISLILGGLPIM 198

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Length = 32

 Score = 41.6 bits (98), Expect = 9e-07
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 56 ASVFTLVAISLDRYMAIMKPLQHRSSRTKAR 86
          +S+  L AISLDRY +I + +++   RT  R
Sbjct: 2  SSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.88
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.85
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.85
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.84
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.84
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.83
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.83
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.83
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.83
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.82
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.82
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.82
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.82
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.82
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.8
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.79
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.78
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.78
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	98.72

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.88  E-value=2.1e-22  Score=149.44  Aligned_cols=112  Identities=27%  Similarity=0.621  Sum_probs=100.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHh--ccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLY--SHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQH   78 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~--~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~   78 (132)
                      +|+++|+|+.|||++|++++++.+|..+.....  +.|.+++..|++..++...+..+|++++++||+|||++|++|++|
T Consensus        66 ~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~  145 (510)
T 4grv_A           66 LQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKA  145 (510)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHheEEEeccccc
Confidence            357899999999999999999999998877653  569999999999999999999999999999999999999999998


Q ss_pred             cc--ccchhhhhehhhhHHHhHHHHHHHHHhhceee
Q psy17210         79 RS--SRTKARISLVVIWLASGLLALPCVLHSTTKIK  112 (132)
Q Consensus        79 ~~--~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~~~  112 (132)
                      ++  ++++++.+++++|++++++++|+++.++....
T Consensus       146 ~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~  181 (510)
T 4grv_A          146 KTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNR  181 (510)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEEC
T ss_pred             cccccccccceeehHHHHHHHHHHHHHHHhhccccc
Confidence            86  67788889999999999999999998765543

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.85  E-value=5.1e-21  Score=132.67  Aligned_cols=112  Identities=29%  Similarity=0.480  Sum_probs=95.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      ||+|+|+++.|||++|++.++ ..|....... .+|..++..|+...+....+..+|.+++++||+|||.+|++|++++.
T Consensus        42 lrt~~n~~i~nLAvaDll~~l-~~p~~~~~~~-~~~~~~~~~c~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~  119 (296)
T 2lnl_A           42 GRSVTDVYLLNLALADLLFAL-TLPIWAASKV-NGWIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLT  119 (296)
T ss_dssp             CCSTTHHHHHHHHHHHHHHHH-HHHHHHHHHH-SSSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSSSC
T ss_pred             CCChHHHHHHHHHHHHHHHHH-hhhHHHhhcc-CCCccchhHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhhccccch
Confidence            689999999999999999876 4666655544 56999999999999999999999999999999999999999999887


Q ss_pred             cc-chhhhhehhhhHHHhHHHHHHHHHhhceeeCC
Q psy17210         81 SR-TKARISLVVIWLASGLLALPCVLHSTTKIKNG  114 (132)
Q Consensus        81 ~~-~~~~~~~~~iw~~s~~~~~~~~~~~~~~~~~~  114 (132)
                      .. ++.+.+++.+|+.++..++|+..+.+....+.
T Consensus       120 ~~~~~~~~~~~~~W~~s~~~~~p~~~~~~~~~~~~  154 (296)
T 2lnl_A          120 QKRHLVKFVCLGCWGLSMNLSLPFFLFRQAYHPNN  154 (296)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCCT
T ss_pred             hhhhhhHheehHHHHHHHHHhcchhhcceeecCCC
Confidence            33 45566677889999999999998776665444

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.85  E-value=6.7e-21  Score=138.80  Aligned_cols=110  Identities=31%  Similarity=0.582  Sum_probs=101.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      +|+|+|+|+.|||++|++.+++..|..+.....+.|..++..|++..++...+..++.+++++||+|||++|++|++|+.
T Consensus        54 ~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~~~~  133 (467)
T 3uon_A           54 LQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPV  133 (467)
T ss_dssp             GCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSGG
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            58999999999999999999999999998888889999999999999999999999999999999999999999999877


Q ss_pred             --ccchhhhhehhhhHHHhHHHHHHHHHhhce
Q psy17210         81 --SRTKARISLVVIWLASGLLALPCVLHSTTK  110 (132)
Q Consensus        81 --~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~  110 (132)
                        +++++..+++++|+++++..+|+.+++...
T Consensus       134 ~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~  165 (467)
T 3uon_A          134 KRTTKMAGMMIAAAWVLSFILWAPAILFWQFI  165 (467)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence              566777888999999999999998876543

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.84  E-value=7.6e-21  Score=134.85  Aligned_cols=109  Identities=48%  Similarity=0.809  Sum_probs=98.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      +|+|+|+++.|||++|++.++...|..+.....++|..++..|+...++...+..++.+++++||+|||.+|++|++++.
T Consensus        63 l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~  142 (364)
T 2ks9_A           63 MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRL  142 (364)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTSC
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence            58999999999999999999888888888777788999999999999999999999999999999999999999999887


Q ss_pred             ccchhhhhehhhhHHHhHHHHHHHHHhhc
Q psy17210         81 SRTKARISLVVIWLASGLLALPCVLHSTT  109 (132)
Q Consensus        81 ~~~~~~~~~~~iw~~s~~~~~~~~~~~~~  109 (132)
                      ++++.+..++.+|+++++.++|.......
T Consensus       143 ~~~~~~~~i~~~W~~s~~~~~p~~~~~~~  171 (364)
T 2ks9_A          143 SATATKVVICVIWVLALLLAFPQGYYSTT  171 (364)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTTTTSCC
T ss_pred             ccchHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence            77888888899999999999887754443

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.84  E-value=8.4e-21  Score=138.94  Aligned_cols=110  Identities=25%  Similarity=0.448  Sum_probs=92.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHH-HHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCcc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFI-YMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHR   79 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~-~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~   79 (132)
                      +|+|+|+|+.|||++|++.++. .|..+. ....+.|..++..|++..++...+..++++++++||+|||++|++|++|+
T Consensus        51 l~~~~~~~l~~La~aDll~~~~-~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~  129 (484)
T 3vw7_A           51 VKKPAVVYMLHLATADVLFVSV-LPFKISYYFSGSDWQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSL  129 (484)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHTT-HHHHHHHHHTTSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---
T ss_pred             cCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCcccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHheEEEcccccc
Confidence            5899999999999999999765 555444 44445899999999999999999999999999999999999999999987


Q ss_pred             c--ccchhhhhehhhhHHHhHHHHHHHHHhhcee
Q psy17210         80 S--SRTKARISLVVIWLASGLLALPCVLHSTTKI  111 (132)
Q Consensus        80 ~--~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~~  111 (132)
                      .  +++++..+++++|+++++.++|+.++.....
T Consensus       130 ~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~  163 (484)
T 3vw7_A          130 SWRTLGRASFTCLAIWALAIAGVVPLLLKEQTIQ  163 (484)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHTSCCEEE
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            6  5667788889999999999999998776553

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.83  E-value=9e-21  Score=137.91  Aligned_cols=113  Identities=36%  Similarity=0.662  Sum_probs=101.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      +|+|+|+|+.|||++|++.++. .|..+.....+.|..+...|++..++..++..++.+++++||+|||++|++|++|++
T Consensus        48 ~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~  126 (464)
T 4dkl_A           48 MKTATNIYIFNLALADALATST-LPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALD  126 (464)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            5899999999999999998876 888888888889999999999999999999999999999999999999999999876


Q ss_pred             --ccchhhhhehhhhHHHhHHHHHHHHHhhceeeCC
Q psy17210         81 --SRTKARISLVVIWLASGLLALPCVLHSTTKIKNG  114 (132)
Q Consensus        81 --~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~~~~~  114 (132)
                        ++++...+++++|++++++++|+.+........+
T Consensus       127 ~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~  162 (464)
T 4dkl_A          127 FRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQG  162 (464)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHSBCCEEETT
T ss_pred             cccccHhHHhHHHHHHHHHHHHHHHHHheeecccCC
Confidence              6667788889999999999999988665554444

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.83  E-value=1.7e-20  Score=131.98  Aligned_cols=110  Identities=25%  Similarity=0.449  Sum_probs=99.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      +|+++|+++.|||++|++.++...|..+.....+.|..++..|+...++...+..++.+++++||+|||.+|++|+++++
T Consensus        69 ~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~  148 (349)
T 1u19_A           69 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR  148 (349)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCC
T ss_pred             hcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcCeeeCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccee
Confidence            58999999999999999999988888888777788999999999999999999999999999999999999999999876


Q ss_pred             -ccchhhhhehhhhHHHhHHHHHHHHHhhce
Q psy17210         81 -SRTKARISLVVIWLASGLLALPCVLHSTTK  110 (132)
Q Consensus        81 -~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~  110 (132)
                       +++++...++.+|+++++.++|+.+++...
T Consensus       149 ~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~  179 (349)
T 1u19_A          149 FGENHAIMGVAFTWVMALACAAPPLVGWSRY  179 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHSGGGTTSSCC
T ss_pred             eccchhHHHHHHHHHHHHHHHHHHHHheeee
Confidence             566777788899999999999998876544

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.83  E-value=2.8e-20  Score=137.56  Aligned_cols=105  Identities=35%  Similarity=0.667  Sum_probs=95.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      +|+++|+|+.|||++|++.+++.+|..+.....+.|.++...|++..++...+..++++++++||+|||++|++|++|++
T Consensus        71 l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~~w~~~~~~C~~~~~~~~~~~~~Si~~l~~isidRy~aI~~Pl~~~~  150 (500)
T 2rh1_A           71 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQS  150 (500)
T ss_dssp             GCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSC
T ss_pred             cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHeeccCcCCe
Confidence            58999999999999999999989999888888889999999999999999999999999999999999999999999876


Q ss_pred             --ccchhhhhehhhhHHHhHHHHHHHH
Q psy17210         81 --SRTKARISLVVIWLASGLLALPCVL  105 (132)
Q Consensus        81 --~~~~~~~~~~~iw~~s~~~~~~~~~  105 (132)
                        +++++..+++++|+++++.+++|.+
T Consensus       151 ~~t~~~~~~~i~~~W~~s~~~~~~p~~  177 (500)
T 2rh1_A          151 LLTKNKARVIILMVWIVSGLTSFLPIQ  177 (500)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccceeehhhHHHHHHHHHHhcchh
Confidence              5667788889999999999865553

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.83  E-value=2.3e-20  Score=135.44  Aligned_cols=105  Identities=30%  Similarity=0.592  Sum_probs=96.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      +|+++|+|+.|||++|++.++...|..+.....+.|..++..|++..++...+..++.+++++||+|||++|++|++|++
T Consensus        39 ~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~  118 (452)
T 3rze_A           39 LHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLK  118 (452)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTT
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHheeCcccccc
Confidence            58999999999999999999999999999888889999999999999999999999999999999999999999999877


Q ss_pred             --ccchhhhhehhhhHHHhHHHHHHHH
Q psy17210         81 --SRTKARISLVVIWLASGLLALPCVL  105 (132)
Q Consensus        81 --~~~~~~~~~~~iw~~s~~~~~~~~~  105 (132)
                        +++++..+++++|+++++..+|...
T Consensus       119 ~~~~~~~~~~i~~~W~~~~~~~~p~~~  145 (452)
T 3rze_A          119 YRTKTRASATILGAWFLSFLWVIPILG  145 (452)
T ss_dssp             TSSHHHHHHHHHHHHHHHGGGHHHHHC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence              6667788889999999999888553

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.82  E-value=1.3e-20  Score=140.06  Aligned_cols=109  Identities=17%  Similarity=0.259  Sum_probs=93.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      ||+++|+|+.|||++|++.++...|..+.. ....|..+...|++..++...+..+|++++++||+|||++|+ |++|+.
T Consensus        94 lr~~~~~~l~nLA~aDll~~~~~~p~~~~~-~~~~~~~~~~~c~~~~~~~~~~~~~S~~~l~~isidRy~aI~-p~~~~~  171 (520)
T 3v2y_A           94 FHRPMYYFIGNLALSDLLAGVAYTANLLLS-GATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITML-KMKLHN  171 (520)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGGTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C-----
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cccceeeCccccchHHHHHHHHHHHHHHHHHHHHHHHhhEEe-cccccc
Confidence            689999999999999999999888877666 556788899999999999999999999999999999999999 999876


Q ss_pred             --ccchhhhhehhhhHHHhHHHHHHHHHhhcee
Q psy17210         81 --SRTKARISLVVIWLASGLLALPCVLHSTTKI  111 (132)
Q Consensus        81 --~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~~  111 (132)
                        +++++..+++++|++++++++|++++++...
T Consensus       172 ~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~  204 (520)
T 3v2y_A          172 GSNNFRLFLLISACWVISLILGGLPIMGWNCIS  204 (520)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHTTTTTCBCTT
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHeecccc
Confidence              6677888889999999999999998776653

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.82  E-value=3.1e-20  Score=135.86  Aligned_cols=113  Identities=27%  Similarity=0.485  Sum_probs=98.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHh-ccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCc-
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLY-SHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQH-   78 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~-~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~-   78 (132)
                      +|+|+|+|+.|||++|++.++..+|..+..... +.|..+...|++..++...+..++.+++++||+|||++|++|++| 
T Consensus        69 ~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~  148 (481)
T 3pbl_A           69 LQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQ  148 (481)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            589999999999999999999889988876665 679999999999999999999999999999999999999999987 


Q ss_pred             --cc--ccchhhhhehhhhHHHhHHHHHHHHHhhceeeC
Q psy17210         79 --RS--SRTKARISLVVIWLASGLLALPCVLHSTTKIKN  113 (132)
Q Consensus        79 --~~--~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~~~~  113 (132)
                        .+  ++++...+++++|+++++..+|+.++++.....
T Consensus       149 ~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~  187 (481)
T 3pbl_A          149 HGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTTGDP  187 (481)
T ss_dssp             HTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSST
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHHHHHheecccCCC
Confidence              22  456677788999999999999999876654333

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.82  E-value=8.5e-21  Score=131.66  Aligned_cols=108  Identities=27%  Similarity=0.559  Sum_probs=98.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      +|+++|+++.|||++|++.++...|..+.....++|..++..|+...++...+..+|.+++++||+|||.+|++|+++++
T Consensus        42 ~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~  121 (315)
T 4amj_A           42 LQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQS  121 (315)
T ss_dssp             GCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             hcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence            58999999999999999998888898888888889999999999999999999999999999999999999999998876


Q ss_pred             --ccchhhhhehhhhHHHhHHHHHHHHHhh
Q psy17210         81 --SRTKARISLVVIWLASGLLALPCVLHST  108 (132)
Q Consensus        81 --~~~~~~~~~~~iw~~s~~~~~~~~~~~~  108 (132)
                        ++++++..++.+|+++++.+.|+.+...
T Consensus       122 ~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~  151 (315)
T 4amj_A          122 LMTRARAKVIICTVWAISALVSFLPIMMHW  151 (315)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccchhhHHHhhhHHHHHHHHHHHHHHHHHh
Confidence              6677888889999999999988887543

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.82  E-value=3.4e-20  Score=136.24  Aligned_cols=113  Identities=27%  Similarity=0.519  Sum_probs=98.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      +|+|+|+|+.|||++|++.+ +..|..+..... +|..++..|++..++..++..++++++++||+|||++|++|++|++
T Consensus        79 l~~~~~~~l~~La~~Dll~~-~~~p~~~~~~~~-~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~P~~~~~  156 (502)
T 3odu_A           79 LRSMTDKYRLHLSVADLLFV-ITLPFWAVDAVA-NWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQR  156 (502)
T ss_dssp             SCCHHHHHHHHHHHHHHHHH-TTHHHHHHHHHT-CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc-CCcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheeccccccc
Confidence            68999999999999999995 577887776654 7999999999999999999999999999999999999999999877


Q ss_pred             --ccchhhhhehhhhHHHhHHHHHHHHHhhceeeCCc
Q psy17210         81 --SRTKARISLVVIWLASGLLALPCVLHSTTKIKNGD  115 (132)
Q Consensus        81 --~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~~~~~~  115 (132)
                        +++++..+++++|+++++.++|+.+........+.
T Consensus       157 ~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~  193 (502)
T 3odu_A          157 PRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDR  193 (502)
T ss_dssp             HHHHHHHTHHHHHTHHHHHHTTHHHHHHEEEEECSSS
T ss_pred             ccchhHHHHhhhHHHHHHHHHHHHHHHheeeeccCCc
Confidence              55566788889999999999999987766554443

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.80  E-value=1.9e-19  Score=131.11  Aligned_cols=114  Identities=30%  Similarity=0.484  Sum_probs=99.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHH-hHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCcc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFN-CVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHR   79 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~   79 (132)
                      +|+++|++++|||++|++.+++. .|..+.....++|..++..|++..++...+..++.+++++||+|||++|++|++++
T Consensus        65 ~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~  144 (448)
T 2z73_A           65 LQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAAS  144 (448)
T ss_dssp             TCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTC
T ss_pred             cCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            58899999999999999998864 77777777778899999999999999999999999999999999999999999886


Q ss_pred             c--ccchhhhhehhhhHHHhHHHHHHHHHhhceeeCC
Q psy17210         80 S--SRTKARISLVVIWLASGLLALPCVLHSTTKIKNG  114 (132)
Q Consensus        80 ~--~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~~~~~  114 (132)
                      +  +++++..+++++|++++++++++.+.++....++
T Consensus       145 ~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~  181 (448)
T 2z73_A          145 KKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEG  181 (448)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHSGGGGTSSCEEECT
T ss_pred             ceechhHHHHHHHHHHHHHHHHHHHHHhceeeeeecC
Confidence            6  5667788889999999999999888776554433

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.79  E-value=9.1e-20  Score=133.33  Aligned_cols=108  Identities=27%  Similarity=0.419  Sum_probs=95.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      +|+++|+|+.|||++|++.++..+|..+...  ..|..+...|++..++..++..++++++++||+|||++|++|++|++
T Consensus        52 ~~~~~~~~l~~La~aDll~~~~~~p~~~~~~--~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~  129 (488)
T 3eml_A           52 LQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNG  129 (488)
T ss_dssp             GCSSHHHHHHHHHHHHHHHHHTHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGSTT
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeccccccc
Confidence            5889999999999999999998888877643  36888889999999999999999999999999999999999998876


Q ss_pred             --ccchhhhhehhhhHHHhHHHHHHHHHhhce
Q psy17210         81 --SRTKARISLVVIWLASGLLALPCVLHSTTK  110 (132)
Q Consensus        81 --~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~  110 (132)
                        +++++..+++++|++++++++|+.+++...
T Consensus       130 ~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~  161 (488)
T 3eml_A          130 LVTGTRAKGIIAICWVLSFAIGLTPMLGWNNC  161 (488)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHTTGGGTCCSS
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence              666778888999999999999998866543

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.78  E-value=1e-19  Score=134.91  Aligned_cols=106  Identities=35%  Similarity=0.654  Sum_probs=97.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      +|+|+|++++|||++|++.++...|..+.....+.|..++..|++..++...+..++.+++++||+|||++|++|++|++
T Consensus       213 lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~S~~~l~~isidRy~aI~~Pl~~~~  292 (514)
T 3sn6_R          213 LQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQS  292 (514)
T ss_dssp             GCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHTSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccch
Confidence            58999999999999999999888999888888889999999999999999999999999999999999999999998876


Q ss_pred             --ccchhhhhehhhhHHHhHHHHHHHHH
Q psy17210         81 --SRTKARISLVVIWLASGLLALPCVLH  106 (132)
Q Consensus        81 --~~~~~~~~~~~iw~~s~~~~~~~~~~  106 (132)
                        +++++..+++++|+++++.++++...
T Consensus       293 ~~t~~~~~~~i~~~Wi~s~l~~~~p~~~  320 (514)
T 3sn6_R          293 LLTKNKARVIILMVWIVSGLTSFLPIQM  320 (514)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHTTHHHHHT
T ss_pred             hccchHHHHHHHHHHHHHHHHHhhhhhc
Confidence              66778888899999999998777654

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.78  E-value=1.2e-19  Score=131.58  Aligned_cols=108  Identities=27%  Similarity=0.419  Sum_probs=95.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      +|+|+|+++.|||++|++.++..+|..+...  ..|..+...|++..++...+..++.+++++||+|||.+|++|++|+.
T Consensus        62 l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~--~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~  139 (447)
T 4eiy_A           62 LQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNG  139 (447)
T ss_dssp             GCSHHHHHHHHHHHHHHHHHHTHHHHHHHHH--TTCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHeEEecccccch
Confidence            5899999999999999999988888877643  36777889999999999999999999999999999999999998876


Q ss_pred             --ccchhhhhehhhhHHHhHHHHHHHHHhhce
Q psy17210         81 --SRTKARISLVVIWLASGLLALPCVLHSTTK  110 (132)
Q Consensus        81 --~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~  110 (132)
                        +++++..+++++|+++++.++|+.+++...
T Consensus       140 ~~~~~~~~~~i~~~Wi~s~~~~~~~~~~~~~~  171 (447)
T 4eiy_A          140 LVTGTRAKGIIAICWVLSFAIGLTPMLGWNNC  171 (447)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHTGGGGTCSST
T ss_pred             hhhHHHHHHHHhHHHHHHHHHHHhhhheeccc
Confidence              667788888999999999999998866543

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A

Probab=98.72  E-value=4.4e-09  Score=49.08  Aligned_cols=27  Identities=41%  Similarity=0.625  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCccccc
Q psy17210         56 ASVFTLVAISLDRYMAIMKPLQHRSSR   82 (132)
Q Consensus        56 ~s~~~l~~ia~~Ry~~i~~p~~~~~~~   82 (132)
                      +|++++++||+|||.+|++|+++....
T Consensus         2 ~Si~~L~~is~dRy~aI~~Pl~~~~~~   28 (32)
T 1hll_A            2 SSIVHLCAISLDRYWSITQAIEYNLKR   28 (32)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHGGGSSC
T ss_pred             cHHHHHHHHHHHHHHHhhhhhhccccc
Confidence            578999999999999999999887633

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	3e-06

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.6 bits (99), Expect = 3e-06
 Identities = 23/78 (29%), Positives = 44/78 (56%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           +RT  NY L+NL++ADLFM            L+ ++ FG   C +  F   +    ++++
Sbjct: 68  LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 127

Query: 61  LVAISLDRYMAIMKPLQH 78
           LV ++++RY+ + KP+ +
Sbjct: 128 LVVLAIERYVVVCKPMSN 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.71

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=2.1e-17  Score=114.67  Aligned_cols=113  Identities=25%  Similarity=0.450  Sum_probs=98.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS   80 (132)
Q Consensus         1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~   80 (132)
                      +|+|.|+++.|||++|++.++...|..+.....+.|..+...|+...+....+..++.++++++++|||.++++|++++.
T Consensus        68 lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~  147 (348)
T d1u19a_          68 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR  147 (348)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCC
T ss_pred             CCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCchhhhhhhhccccceeeecchhhhhhcccceeeeccccccc
Confidence            68999999999999999999988898888888888999999999999999999999999999999999999999999877


Q ss_pred             -ccchhhhhehhhhHHHhHHHHHHHHHhhceeeC
Q psy17210         81 -SRTKARISLVVIWLASGLLALPCVLHSTTKIKN  113 (132)
Q Consensus        81 -~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~~~~  113 (132)
                       .+++....+..+|..+++...|+.++......+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (348)
T d1u19a_         148 FGENHAIMGVAFTWVMALACAAPPLVGWSRYIPE  181 (348)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEE
T ss_pred             cccccccccceeeehhhhheecccccccceeccC
Confidence             445556666778888888888888765555433