Psyllid ID: psy17228

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MYRKKQWRLKLTKTKWTIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLEHGRDVLESLWKLDMNYSYRIE
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHccccccccccccccccccHHHHHHHcHHHHHHHHHHccccHccccc
Coil and Loop (DISEMBL)
myrkkqwrLKLTKTKWTIKLTKTKIDDilqrnkvpiivggtNYYIESLLWTILLdnktnindqgeftlydmdkirnlehGRDVLESLWKldmnysyrie
Flexible Loop (DISEMBL)
myrkkqwrlkltktkwtikltktkiddilqrnkvpiivgGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLEHGRDVleslwkldmnysyrie
Low Complexity Region (SEG)
MYrkkqwrlkltktkwtikltktkiDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLEHGRDVLESLWKLDMNYSYRIE
Disordered region (IsUnstruct)
******WRLKLTKTKWTIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLEHGRDVLESLWKLDMNYSY***
Disordered Region (DISOPRED)
****KQWRLKLTKTKWTIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLD*******************RNLEHGRDVLESLWKLDMNYSYRIE
Disordered Region (DISEMBL)
MYRKKQWRLKLTKTKWTIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLEHGRDVLESLWKLDMNYSYRIE
Disordered Region (DISPRO)
MYRKKQWRLKLTKTKWTIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNK********FTLYDMDKIRNLEHGRDVLESLWKLDM*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYRKKQWRLKLTKTKWTIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLEHGRDVLESLWKLDMNYSYRIE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
Q9H3H1	467	tRNA dimethylallyltransfe	yes	N/A	0.333	0.070	0.666	1e-07
Q80UN9	467	tRNA dimethylallyltransfe	yes	N/A	0.333	0.070	0.666	2e-07
Q8XL85	310	tRNA dimethylallyltransfe	yes	N/A	0.656	0.209	0.385	0.0004
B2G870	307	tRNA dimethylallyltransfe	yes	N/A	0.727	0.234	0.425	0.0004
A5VKT6	307	tRNA dimethylallyltransfe	yes	N/A	0.727	0.234	0.425	0.0004
Q0STR2	310	tRNA dimethylallyltransfe	yes	N/A	0.666	0.212	0.366	0.0008
Q9ZUX7	466	tRNA dimethylallyltransfe	yes	N/A	0.666	0.141	0.318	0.0009

>sp|Q9H3H1|MOD5_HUMAN tRNA dimethylallyltransferase, mitochondrial OS=Homo sapiens GN=TRIT1 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/33 (66%), Positives = 29/33 (87%)

Query: 25  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNK 57
           I+DI  R+K+PI+VGGTNYYIESLLW +L++ K
Sbjct: 106 IEDIFARDKIPIVVGGTNYYIESLLWKVLVNTK 138

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 of both cytosolic and mitochondrial tRNAs, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 7EC: 5

>sp|Q80UN9|MOD5_MOUSE tRNA dimethylallyltransferase, mitochondrial OS=Mus musculus GN=Trit1 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/33 (66%), Positives = 28/33 (84%)

Query: 25  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNK 57
           I+DI  R+K+PI+VGGTNYYIESLLW +L+  K
Sbjct: 106 IEDIFARDKIPIVVGGTNYYIESLLWKVLITTK 138

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 of both cytosolic and mitochondrial tRNAs, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|Q8XL85|MIAA_CLOPE tRNA dimethylallyltransferase OS=Clostridium perfringens (strain 13 / Type A) GN=miaA PE=3 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 20  LTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLEH 79
           LT  KI DI  R K+PI+VGGT  YI S++  +        +D+ E    +++KI N EH
Sbjct: 80  LTTEKIKDIQSRGKLPILVGGTGLYINSIICNMNFAE----SDKDEEYREELEKIAN-EH 134

Query: 80  GRDVLESLWK 89
           G + L  + K
Sbjct: 135 GNEYLHEMLK 144

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Clostridium perfringens (strain 13 / Type A) (taxid: 195102)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|B2G870|MIAA_LACRJ tRNA dimethylallyltransferase OS=Lactobacillus reuteri (strain JCM 1112) GN=miaA PE=3 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 46/87 (52%), Gaps = 15/87 (17%)

Query: 19  KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNL- 77
           KL   KID+I QRN +PII GGT +Y+++     L DN    +DQ  F    +D IRN  
Sbjct: 78  KLADQKIDEIAQRNHLPIIAGGTGFYLQT-----LTDNLALGSDQ--FDQQTLD-IRNHW 129

Query: 78  -----EHGRD-VLESLWKLDMNYSYRI 98
                E G + V E L KLD   S RI
Sbjct: 130 KEVAEEKGAEYVWEQLNKLDPVASARI 156

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Lactobacillus reuteri (strain JCM 1112) (taxid: 557433)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|A5VKT6|MIAA_LACRD tRNA dimethylallyltransferase OS=Lactobacillus reuteri (strain DSM 20016) GN=miaA PE=3 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 46/87 (52%), Gaps = 15/87 (17%)

Query: 19  KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNL- 77
           KL   KID+I QRN +PII GGT +Y+++     L DN    +DQ  F    +D IRN  
Sbjct: 78  KLADQKIDEIAQRNHLPIIAGGTGFYLQT-----LTDNLALGSDQ--FDQQTLD-IRNHW 129

Query: 78  -----EHGRD-VLESLWKLDMNYSYRI 98
                E G + V E L KLD   S RI
Sbjct: 130 KEVAEEKGAEYVWEQLNKLDPVASARI 156

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Lactobacillus reuteri (strain DSM 20016) (taxid: 557436)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|Q0STR2|MIAA_CLOPS tRNA dimethylallyltransferase OS=Clostridium perfringens (strain SM101 / Type A) GN=miaA PE=3 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 19  KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLE 78
           +L   KI DI  R K+PI+VGGT  YI S++  +        +D+ E    +++KI N E
Sbjct: 79  ELATEKIKDIQSRGKLPILVGGTGLYINSIICNMNFAE----SDKDEEYREELEKIAN-E 133

Query: 79  HGRDVLESLWK 89
           HG + L  + K
Sbjct: 134 HGNEYLHEMLK 144

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Clostridium perfringens (strain SM101 / Type A) (taxid: 289380)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|Q9ZUX7|IPT2_ARATH tRNA dimethylallyltransferase 2 OS=Arabidopsis thaliana GN=IPT2 PE=1 SV=2

 Score = 42.4 bits (98), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 25  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQ---GEFTLYDMDKIRNLEHGR 81
           I++I+ RN +P++VGGT+YYI++++   LLD+     ++      ++ D D +     GR
Sbjct: 102 IEEIVSRNHIPVLVGGTHYYIQAVVSKFLLDDAAEDTEECCADVASVVDQDMVVESVFGR 161

Query: 82  DVLESLWKL 90
           D L   ++L
Sbjct: 162 DDLSHGYEL 170

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A). Involved in the cis-type cytokinin biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
348542152	482	PREDICTED: tRNA dimethylallyltransferase	0.393	0.080	0.666	2e-07
363742426	448	PREDICTED: tRNA dimethylallyltransferase	0.434	0.095	0.581	2e-07
47229482	454	unnamed protein product [Tetraodon nigro	0.313	0.068	0.806	3e-07
156380728	420	predicted protein [Nematostella vectensi	0.464	0.109	0.519	3e-07
58332462	457	tRNA isopentenyltransferase 1 [Xenopus (	0.363	0.078	0.722	5e-07
321468359	509	hypothetical protein DAPPUDRAFT_304867 [	0.606	0.117	0.476	5e-07
89268175	444	tRNA isopentenyltransferase 1 [Xenopus (	0.363	0.081	0.722	5e-07
344287661	467	PREDICTED: tRNA dimethylallyltransferase	0.505	0.107	0.518	6e-07
380019144	901	PREDICTED: uncharacterized protein LOC10	0.323	0.035	0.75	8e-07
410911182	446	PREDICTED: tRNA dimethylallyltransferase	0.313	0.069	0.806	1e-06

>gi|348542152|ref|XP_003458550.1| PREDICTED: tRNA dimethylallyltransferase, mitochondrial-like [Oreochromis niloticus]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/39 (66%), Positives = 33/39 (84%)

Query: 25  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQ 63
           IDD+ +RNK+PIIVGGTNYYIESLLW +LLD   + N++
Sbjct: 101 IDDMHKRNKLPIIVGGTNYYIESLLWKVLLDTGVSENEE 139

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|363742426|ref|XP_417825.3| PREDICTED: tRNA dimethylallyltransferase, mitochondrial [Gallus gallus]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 25  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFT 67
           I+DI  R+K+PI+VGGTNYYIESLLW +L++ K +    G FT
Sbjct: 97  IEDIFARDKIPIVVGGTNYYIESLLWKVLVNTKKSTMVSGTFT 139

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47229482|emb|CAF99470.1| unnamed protein product [Tetraodon nigroviridis]

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/31 (80%), Positives = 28/31 (90%)

Query: 25  IDDILQRNKVPIIVGGTNYYIESLLWTILLD 55
           IDD+  RNK+PIIVGGTNYYIESLLW +LLD
Sbjct: 101 IDDMRSRNKLPIIVGGTNYYIESLLWKVLLD 131

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156380728|ref|XP_001631919.1| predicted protein [Nematostella vectensis] gi|156218968|gb|EDO39856.1| predicted protein [Nematostella vectensis]

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 37/52 (71%), Gaps = 6/52 (11%)

Query: 25  IDDILQRNKVPIIVGGTNYYIESLLWTILLDN------KTNINDQGEFTLYD 70
           I++I  R K+PI+VGGTNYYIESLLW IL+DN       ++++D GE  + D
Sbjct: 93  IEEIKGRGKIPIVVGGTNYYIESLLWEILIDNDNKPPENSDVDDDGELQIVD 144

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|58332462|ref|NP_001011306.1| tRNA isopentenyltransferase 1 [Xenopus (Silurana) tropicalis] gi|56789100|gb|AAH88030.1| tRNA isopentenyltransferase 1 [Xenopus (Silurana) tropicalis]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 30/36 (83%)

Query: 23  TKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 58
           T I+DI  RNK+PI+VGGTNYYIESLLW ILL+  T
Sbjct: 91  TLIEDIFSRNKIPIVVGGTNYYIESLLWKILLNTVT 126

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321468359|gb|EFX79344.1| hypothetical protein DAPPUDRAFT_304867 [Daphnia pulex]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 5/65 (7%)

Query: 14  TKWTIKLTKTK----IDDILQRNKVPIIVGGTNYYIESLLWTILLD-NKTNINDQGEFTL 68
           T+WT+   + K    IDD+L   +VP+IVGGT+YYIESLLW +LLD +  +  DQ    L
Sbjct: 85  TRWTVVDFQRKSLAVIDDLLVNGRVPVIVGGTHYYIESLLWKVLLDGDHKSSRDQTTTLL 144

Query: 69  YDMDK 73
           Y+ D+
Sbjct: 145 YERDE 149

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|89268175|emb|CAJ82129.1| tRNA isopentenyltransferase 1 [Xenopus (Silurana) tropicalis]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 30/36 (83%)

Query: 23  TKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 58
           T I+DI  RNK+PI+VGGTNYYIESLLW ILL+  T
Sbjct: 78  TLIEDIFSRNKIPIVVGGTNYYIESLLWKILLNTVT 113

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344287661|ref|XP_003415571.1| PREDICTED: tRNA dimethylallyltransferase, mitochondrial [Loxodonta africana]

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 25  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLE 78
           I+DI  R+K+PI+VGGTNYY+ESLLW +L++ K     QG  T+  MD+   LE
Sbjct: 106 IEDIFARDKIPIVVGGTNYYVESLLWKVLVNTKP----QGMDTMKVMDRKVELE 155

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|380019144|ref|XP_003693474.1| PREDICTED: uncharacterized protein LOC100868799 [Apis florea]

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/32 (75%), Positives = 29/32 (90%)

Query: 25  IDDILQRNKVPIIVGGTNYYIESLLWTILLDN 56
           IDD+L R K+PIIVGGTNYYIES+LW +L+DN
Sbjct: 553 IDDLLTRRKLPIIVGGTNYYIESILWEVLMDN 584

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|410911182|ref|XP_003969069.1| PREDICTED: tRNA dimethylallyltransferase, mitochondrial-like [Takifugu rubripes]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/31 (80%), Positives = 28/31 (90%)

Query: 25  IDDILQRNKVPIIVGGTNYYIESLLWTILLD 55
           IDD+  RNK+PIIVGGTNYYIESLLW +LLD
Sbjct: 101 IDDMQSRNKLPIIVGGTNYYIESLLWKVLLD 131

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
UNIPROTKB|B4E3K2	144	TRIT1 "tRNA dimethylallyltrans	0.353	0.243	0.6	2e-08
UNIPROTKB|F1SMC5	413	TRIT1 "Uncharacterized protein	0.636	0.152	0.415	1.1e-07
MGI|MGI:1914216	467	Trit1 "tRNA isopentenyltransfe	0.646	0.137	0.409	1.4e-07
UNIPROTKB|E1C6R1	459	TRIT1 "Uncharacterized protein	0.424	0.091	0.558	2.8e-07
UNIPROTKB|Q9H3H1	467	TRIT1 "tRNA dimethylallyltrans	0.323	0.068	0.656	3.7e-07
UNIPROTKB|F6RA00	467	TRIT1 "Uncharacterized protein	0.323	0.068	0.656	6.1e-07
RGD|1304781	479	Trit1 "tRNA isopentenyltransfe	0.616	0.127	0.447	6.4e-07
ZFIN|ZDB-GENE-060503-297	455	trit1 "tRNA isopentenyltransfe	0.252	0.054	0.72	1.7e-06
UNIPROTKB|F1Q3P4	468	TRIT1 "Uncharacterized protein	0.626	0.132	0.406	2.1e-06
FB|FBgn0043799	477	CG31381 [Drosophila melanogast	0.707	0.146	0.388	7.6e-06

UNIPROTKB|B4E3K2 TRIT1 "tRNA dimethylallyltransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 21/35 (60%), Positives = 30/35 (85%)

Query:    26 DDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNI 60
             +DI  R+K+PI+VGGTNYYIESLLW +L++ K ++
Sbjct:   107 EDIFARDKIPIVVGGTNYYIESLLWKVLVNTKVSL 141

GO:0005524 "ATP binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|F1SMC5 TRIT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 129 (50.5 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 27/65 (41%), Positives = 40/65 (61%)

Query:    27 DILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLEHGRDVLES 86
             DI  R+K+PI+VGGTNYYIESLLW +L++ K    + G   + D       E G ++ + 
Sbjct:    51 DIFARDKIPIVVGGTNYYIESLLWKVLVNTKPQ--EMGTKKVIDRKAELEKEDGHELHKR 108

Query:    87 LWKLD 91
             L ++D
Sbjct:   109 LSQVD 113

GO:0005739 "mitochondrion" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:1914216 Trit1 "tRNA isopentenyltransferase 1" [Mus musculus (taxid:10090)]

 Score = 129 (50.5 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 27/66 (40%), Positives = 40/66 (60%)

Query:    26 DDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLEHGRDVLE 85
             +DI  R+K+PI+VGGTNYYIESLLW +L+  K    + G   + D       E G ++ +
Sbjct:   107 EDIFARDKIPIVVGGTNYYIESLLWKVLITTKPQ--EMGTGKVVDRKVELEKEDGHELHK 164

Query:    86 SLWKLD 91
              L ++D
Sbjct:   165 RLSQVD 170

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008033 "tRNA processing" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0052381 "tRNA dimethylallyltransferase activity" evidence=IEA

UNIPROTKB|E1C6R1 TRIT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 126 (49.4 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 24/43 (55%), Positives = 31/43 (72%)

Query:    26 DDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNIND-QGEFT 67
             +DI  R+K+PI+VGGTNYYIESLLW +L++ K       G FT
Sbjct:   108 EDIFARDKIPIVVGGTNYYIESLLWKVLVNTKEKSTMVSGTFT 150

GO:0008033 "tRNA processing" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9H3H1 TRIT1 "tRNA dimethylallyltransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 125 (49.1 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 21/32 (65%), Positives = 28/32 (87%)

Query:    26 DDILQRNKVPIIVGGTNYYIESLLWTILLDNK 57
             +DI  R+K+PI+VGGTNYYIESLLW +L++ K
Sbjct:   107 EDIFARDKIPIVVGGTNYYIESLLWKVLVNTK 138

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0052381 "tRNA dimethylallyltransferase activity" evidence=TAS

GO:0008033 "tRNA processing" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F6RA00 TRIT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 123 (48.4 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 21/32 (65%), Positives = 28/32 (87%)

Query:    26 DDILQRNKVPIIVGGTNYYIESLLWTILLDNK 57
             +DI  R+K+PI+VGGTNYYIESLLW +L++ K
Sbjct:   107 EDIFARDKIPIVVGGTNYYIESLLWKVLVNAK 138

GO:0005739 "mitochondrion" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

RGD|1304781 Trit1 "tRNA isopentenyltransferase 1" [Rattus norvegicus (taxid:10116)]

 Score = 123 (48.4 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 30/67 (44%), Positives = 42/67 (62%)

Query:    27 DILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLEH--GRDVL 84
             DI  R+K+PI+VGGTNYYIESLLW +L+  K     QG  T   +D+   LE   G ++ 
Sbjct:   122 DIFARDKIPIVVGGTNYYIESLLWKVLVTTKP----QGMGTGKAVDRKVELEKEDGHELH 177

Query:    85 ESLWKLD 91
             + L ++D
Sbjct:   178 KRLSQVD 184

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0008033 "tRNA processing" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

ZFIN|ZDB-GENE-060503-297 trit1 "tRNA isopentenyltransferase 1" [Danio rerio (taxid:7955)]

 Score = 110 (43.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
 Identities = 18/25 (72%), Positives = 23/25 (92%)

Query:    31 RNKVPIIVGGTNYYIESLLWTILLD 55
             R K+P+IVGGTNYYIES+LW +L+D
Sbjct:   111 RKKLPVIVGGTNYYIESILWKVLID 135

GO:0008033 "tRNA processing" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|F1Q3P4 TRIT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 118 (46.6 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 26/64 (40%), Positives = 38/64 (59%)

Query:    28 ILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLEHGRDVLESL 87
             I  R+K+PI+VGGTNYYIESLLW +L++ K    + G   + D       E G  + + L
Sbjct:   110 IFARDKIPIVVGGTNYYIESLLWKVLVNTKPQ--EMGTEKVIDRKVELEKEDGHALHKRL 167

Query:    88 WKLD 91
              ++D
Sbjct:   168 SQVD 171

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

FB|FBgn0043799 CG31381 [Drosophila melanogaster (taxid:7227)]

 Score = 113 (44.8 bits), Expect = 7.6e-06, P = 7.6e-06
 Identities = 28/72 (38%), Positives = 43/72 (59%)

Query:    28 ILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDM-DKIRNLEHGRDVLES 86
             +L ++  PI+VGGTNYYIESLLW IL+D+     D+G+ +   + D   N     ++ + 
Sbjct:    90 LLAKDTSPIVVGGTNYYIESLLWDILVDSDVK-PDEGKHSGEHLKDAELNALSTLELHQH 148

Query:    87 LWKLDMNYSYRI 98
             L K+D   + RI
Sbjct:   149 LAKIDAGSANRI 160

GO:0006400 "tRNA modification" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	99
PLN02748	468	PLN02748, PLN02748, tRNA dimethylallyltransferase	1e-07
PRK00091	307	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosp	4e-07
COG0324	308	COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosph	3e-06
pfam01715	253	pfam01715, IPPT, IPP transferase	1e-05
TIGR00174	287	TIGR00174, miaA, tRNA dimethylallyltransferase	5e-04
PLN02165	334	PLN02165, PLN02165, adenylate isopentenyltransfera	0.001

>gnl|CDD|215399 PLN02748, PLN02748, tRNA dimethylallyltransferase

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 19/32 (59%), Positives = 27/32 (84%)

Query: 25  IDDILQRNKVPIIVGGTNYYIESLLWTILLDN 56
           I++IL RN +P+IVGGTNYYI++L+   LLD+
Sbjct: 104 IEEILSRNGLPVIVGGTNYYIQALVSPFLLDD 135

Length = 468

>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

 Score = 45.9 bits (110), Expect = 4e-07
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 19  KLTKTKIDDILQRNKVPIIVGGTNYYIESLL 49
           +     I DIL R K+PI+VGGT  YI++LL
Sbjct: 80  RDALAAIADILARGKLPILVGGTGLYIKALL 110

Length = 307

>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 24  KIDDILQRNKVPIIVGGTNYYIESLL 49
            IDDIL R K+PI+VGGT  Y+++LL
Sbjct: 84  AIDDILARGKLPILVGGTGLYLKALL 109

Length = 308

>gnl|CDD|216659 pfam01715, IPPT, IPP transferase

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 24 KIDDILQRNKVPIIVGGTNYYIESLL 49
           I +I  R K+P++VGGT  Y ++LL
Sbjct: 48 AIAEIRARGKIPLLVGGTGLYFKALL 73

This is a family of IPP transferases EC:2.5.1.8 also known as tRNA delta(2)-isopentenylpyrophosphate transferase. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37). Length = 253

>gnl|CDD|213512 TIGR00174, miaA, tRNA dimethylallyltransferase

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 13/26 (50%), Positives = 19/26 (73%)

Query: 24  KIDDILQRNKVPIIVGGTNYYIESLL 49
            I DI  R K+P++VGGT  Y+++LL
Sbjct: 80  AIADITARGKIPLLVGGTGLYLKALL 105

Alternate names include delta(2)-isopentenylpyrophosphate transferase, IPP transferase, 2-methylthio-N6-isopentyladenosine tRNA modification enzyme. Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine. Understanding of substrate specificity has changed [Protein synthesis, tRNA and rRNA base modification]. Length = 287

>gnl|CDD|177823 PLN02165, PLN02165, adenylate isopentenyltransferase

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 25  IDDILQRNKVPIIVGGTNYYIESLL 49
           I +I  R K+PI+ GG+N +I +LL
Sbjct: 126 ISEITSRQKLPIVAGGSNSFIHALL 150

Length = 334

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
PF01715	253	IPPT: IPP transferase; InterPro: IPR002627 tRNA is	99.86
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	99.84
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	99.82
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	99.81
PLN02748	468	tRNA dimethylallyltransferase	99.8
PLN02840	421	tRNA dimethylallyltransferase	99.77
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	99.74
PLN02165	334	adenylate isopentenyltransferase	99.0
KOG1384|consensus	348		98.75
COG2069	403	CdhD CO dehydrogenase/acetyl-CoA synthase delta su	93.16

>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2

Probab=99.86  E-value=1.8e-22  Score=153.73  Aligned_cols=75  Identities=35%  Similarity=0.432  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHhcccCCCCCCCcc-----------cchHhHHHHHhhcchhhchhhh
Q psy17228         16 WTIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNIND-----------QGEFTLYDMDKIRNLEHGRDVL   84 (99)
Q Consensus        16 ~~~~~a~~~i~~i~~~~~~pilVGGTglYi~all~g~~~~~~~~~~~-----------~~~~~l~~~l~~~d~e~~~~~p   84 (99)
                      -|+++|.++|++|+++|++||||||||||++||++|+. +.|+.++.           .|...+|+.|..+|       |
T Consensus        40 ~f~~~a~~~i~~i~~rgk~PIlvGGTglYi~all~g~~-~~p~~~~~~r~~~~~~~~~~~~~~l~~~L~~~D-------P  111 (253)
T PF01715_consen   40 DFQRDAREAIEDILARGKIPILVGGTGLYIQALLNGLA-DIPEVDPELRAELRAELEEEGNEELYEELKEVD-------P  111 (253)
T ss_dssp             HHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTS---TSSSHHHHHHHHHHHHHHSCHHHHHHHHHHC--------H
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEECChHHHHHHHHhChh-hhccccHHHHHHHHHHHHhccHHHHHHHHHhhC-------c
Confidence            46689999999999999999999999999999999986 22333222           36778999999999       9


Q ss_pred             HHhhccCCCCCCCC
Q psy17228         85 ESLWKLDMNYSYRI   98 (99)
Q Consensus        85 ~~A~rI~pnD~~RI   98 (99)
                      ++|++|||||++||
T Consensus       112 ~~A~~i~~nd~~Ri  125 (253)
T PF01715_consen  112 EAAAKIHPNDRRRI  125 (253)
T ss_dssp             HHHCTS-TT-HHHH
T ss_pred             HhhhcCCCCcHHHH
Confidence            99999999999997

5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=99.84  E-value=1.9e-21  Score=151.91  Aligned_cols=75  Identities=24%  Similarity=0.347  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHhcccCCCCCCCcc-----------cchHhHHHHHhhcchhhchhhh
Q psy17228         16 WTIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNIND-----------QGEFTLYDMDKIRNLEHGRDVL   84 (99)
Q Consensus        16 ~~~~~a~~~i~~i~~~~~~pilVGGTglYi~all~g~~~~~~~~~~~-----------~~~~~l~~~l~~~d~e~~~~~p   84 (99)
                      .|+++|.++|++|+++|++||||||||||++||++|+.. .|+.++.           .|...+|++|..+|       |
T Consensus        76 ~f~~~a~~~i~~i~~~gk~PilvGGTglYi~all~gl~~-~p~~~~~~r~~~~~~~~~~g~~~l~~~L~~~D-------P  147 (300)
T PRK14729         76 IFYKEALKIIKELRQQKKIPIFVGGSAFYFKHLKYGLPS-TPPVSSKIRIYVNNLFTLKGKSYLLEELKRVD-------F  147 (300)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEeCchHHHHHHHcCCCC-CCCCCHHHHHHHHHHHHhcCHHHHHHHHHhcC-------H
Confidence            467999999999999999999999999999999999863 2333321           35667899999999       9


Q ss_pred             HHhhccCCCCCCCC
Q psy17228         85 ESLWKLDMNYSYRI   98 (99)
Q Consensus        85 ~~A~rI~pnD~~RI   98 (99)
                      ++|++|||||++||
T Consensus       148 ~~A~~i~pnd~~Ri  161 (300)
T PRK14729        148 IRYESINKNDIYRI  161 (300)
T ss_pred             HHHhhCCcCCHHHH
Confidence            99999999999997

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=1.2e-20  Score=148.10  Aligned_cols=75  Identities=33%  Similarity=0.374  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHhccc-CCCCCCCc---------ccchHhHHHHHhhcchhhchhhhHH
Q psy17228         17 TIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTIL-LDNKTNIN---------DQGEFTLYDMDKIRNLEHGRDVLES   86 (99)
Q Consensus        17 ~~~~a~~~i~~i~~~~~~pilVGGTglYi~all~g~~-~~~~~~~~---------~~~~~~l~~~l~~~d~e~~~~~p~~   86 (99)
                      |.++|...|++|.++||+|||||||||||+||++|++ +|..+...         ..|...||++|...|       |++
T Consensus        77 f~~~a~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~~~p~~~~~~r~~~~~~~~~~g~~~L~~~L~~~D-------p~~  149 (308)
T COG0324          77 FQRDALAAIDDILARGKLPILVGGTGLYLKALLEGLSLLPEADPEVRRRLEAELAELGNDALHAELKKID-------PEA  149 (308)
T ss_pred             HHHHHHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhC-------HHH
Confidence            6789999999999999999999999999999999987 33222111         235678899999999       999


Q ss_pred             hhccCCCCCCCC
Q psy17228         87 LWKLDMNYSYRI   98 (99)
Q Consensus        87 A~rI~pnD~~RI   98 (99)
                      |++|||||++|+
T Consensus       150 a~~i~pnD~~Ri  161 (308)
T COG0324         150 AAKIHPNDPQRI  161 (308)
T ss_pred             HHhcCCCchhHH
Confidence            999999999997

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=99.81  E-value=3.1e-20  Score=144.33  Aligned_cols=75  Identities=29%  Similarity=0.336  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHhcccCCCCCCCc-----------ccchHhHHHHHhhcchhhchhhh
Q psy17228         16 WTIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNIN-----------DQGEFTLYDMDKIRNLEHGRDVL   84 (99)
Q Consensus        16 ~~~~~a~~~i~~i~~~~~~pilVGGTglYi~all~g~~~~~~~~~~-----------~~~~~~l~~~l~~~d~e~~~~~p   84 (99)
                      -|..+|.++|++++++|++|||||||||||+||++|+.. .|+.++           ..|.+.+|++|..+|       |
T Consensus        72 ~f~~~a~~~i~~~~~~g~~pi~vGGTg~Yi~all~g~~~-~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~D-------P  143 (287)
T TIGR00174        72 DFQTLALNAIADITARGKIPLLVGGTGLYLKALLEGLSP-TPSADKLIREQLEILAEEQGWDFLYNELKKVD-------P  143 (287)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHcCCCC-CCCCCHHHHHHHHHHHHHcCHHHHHHHHHhcC-------H
Confidence            356899999999999999999999999999999999862 233322           135677899999999       9


Q ss_pred             HHhhccCCCCCCCC
Q psy17228         85 ESLWKLDMNYSYRI   98 (99)
Q Consensus        85 ~~A~rI~pnD~~RI   98 (99)
                      ++|++|||||++||
T Consensus       144 ~~a~~i~~nd~~Ri  157 (287)
T TIGR00174       144 VAAAKIHPNDTRRV  157 (287)
T ss_pred             HHHHhcCCccHHHH
Confidence            99999999999997

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PLN02748 tRNA dimethylallyltransferase

Probab=99.80  E-value=6.7e-20  Score=150.36  Aligned_cols=75  Identities=32%  Similarity=0.476  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHhcccCCC-CCCC--------c-------------ccchHhHHHHHhh
Q psy17228         17 TIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDN-KTNI--------N-------------DQGEFTLYDMDKI   74 (99)
Q Consensus        17 ~~~~a~~~i~~i~~~~~~pilVGGTglYi~all~g~~~~~-~~~~--------~-------------~~~~~~l~~~l~~   74 (99)
                      |.++|..+|++|+++|++|||||||||||+||++|+.++. |+..        +             ..+...+|++|..
T Consensus        96 F~~~A~~~I~~I~~rgk~PIlVGGTglYi~aLl~g~~~~~~p~~~~~~~~~~~~~~r~~l~~~~~~~~~g~~~l~~~L~~  175 (468)
T PLN02748         96 FRDHAVPLIEEILSRNGLPVIVGGTNYYIQALVSPFLLDDMAEETEDCTFVVASVLDEHMDVESGLGNDDEDHGYELLKE  175 (468)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEcChHHHHHHHHcCcccccCCccccccccccCHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            5689999999999999999999999999999999986421 1111        0             1244568888999


Q ss_pred             cchhhchhhhHHhhccCCCCCCCC
Q psy17228         75 RNLEHGRDVLESLWKLDMNYSYRI   98 (99)
Q Consensus        75 ~d~e~~~~~p~~A~rI~pnD~~RI   98 (99)
                      +|       |++|++|||||++||
T Consensus       176 vD-------P~~A~rihpnD~rRI  192 (468)
T PLN02748        176 LD-------PVAANRIHPNNHRKI  192 (468)
T ss_pred             hC-------HHHHhhcCCccHHHH
Confidence            99       999999999999997

>PLN02840 tRNA dimethylallyltransferase

Probab=99.77  E-value=3.6e-19  Score=144.57  Aligned_cols=74  Identities=20%  Similarity=0.248  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHhcccCCCCCCCccc---------------chHhHHHHH-hhcchhh
Q psy17228         16 WTIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQ---------------GEFTLYDMD-KIRNLEH   79 (99)
Q Consensus        16 ~~~~~a~~~i~~i~~~~~~pilVGGTglYi~all~g~~~~~~~~~~~~---------------~~~~l~~~l-~~~d~e~   79 (99)
                      -|+++|.++|++|+++|++|||||||||||+||++|+.. .|+.++..               +...++++| +..|   
T Consensus        94 ~F~~~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~G~~~-~p~~~~~~r~~l~~~l~~~~~~~g~~~l~~~Ll~~~D---  169 (421)
T PLN02840         94 AFFDDARRATQDILNRGRVPIVAGGTGLYLRWYIYGKPD-VPKSSPEITSEVWSELVDFQKNGDWDAAVELVVNAGD---  169 (421)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEcCccHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHhccccCHHHHHHHHHhccC---
Confidence            467899999999999999999999999999999999862 23322221               134455553 3456   


Q ss_pred             chhhhHHhhccCCCCCCCC
Q psy17228         80 GRDVLESLWKLDMNYSYRI   98 (99)
Q Consensus        80 ~~~~p~~A~rI~pnD~~RI   98 (99)
                          | +|++|||||++||
T Consensus       170 ----P-~A~~i~pnD~~Ri  183 (421)
T PLN02840        170 ----P-KARSLPRNDWYRL  183 (421)
T ss_pred             ----c-HHHhcCCCcHHHH
Confidence                8 9999999999997

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=99.74  E-value=5.4e-18  Score=132.57  Aligned_cols=75  Identities=29%  Similarity=0.275  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHhcccCCCCCCCcc-----------cchHhHHHHHhhcchhhchhhh
Q psy17228         16 WTIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNIND-----------QGEFTLYDMDKIRNLEHGRDVL   84 (99)
Q Consensus        16 ~~~~~a~~~i~~i~~~~~~pilVGGTglYi~all~g~~~~~~~~~~~-----------~~~~~l~~~l~~~d~e~~~~~p   84 (99)
                      -|.++|.+.|++++++|++||||||||||++||++|+. ..|+.++.           .|...+|+.|..+|       |
T Consensus        77 ~f~~~a~~~i~~i~~~gk~pIlvGGt~~Y~~al~~g~~-~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~D-------p  148 (307)
T PRK00091         77 DFQRDALAAIADILARGKLPILVGGTGLYIKALLEGLS-PLPPADPELRAELEALAAEEGWEALHAELAEID-------P  148 (307)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHhccCCC-CCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhcC-------H
Confidence            57789999999999999999999999999999999976 33444332           35677899999999       9


Q ss_pred             HHhhccCCCCCCCC
Q psy17228         85 ESLWKLDMNYSYRI   98 (99)
Q Consensus        85 ~~A~rI~pnD~~RI   98 (99)
                      ++|++|||||++||
T Consensus       149 ~~a~~i~~~d~~Ri  162 (307)
T PRK00091        149 EAAARIHPNDPQRI  162 (307)
T ss_pred             HHHhhcCCCCCchh
Confidence            99999999999998

>PLN02165 adenylate isopentenyltransferase

Probab=99.00  E-value=5.1e-10  Score=89.12  Aligned_cols=39  Identities=33%  Similarity=0.525  Sum_probs=36.4

Q ss_pred             hHHHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHhccc
Q psy17228         15 KWTIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTIL   53 (99)
Q Consensus        15 ~~~~~~a~~~i~~i~~~~~~pilVGGTglYi~all~g~~   53 (99)
                      ..|.++|..+|++|+++|++||+||||||||+||++|+.
T Consensus       116 ~~F~~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~  154 (334)
T PLN02165        116 SEFRSLASLSISEITSRQKLPIVAGGSNSFIHALLADRF  154 (334)
T ss_pred             HHHHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCC
Confidence            567889999999999999999999999999999999964

>KOG1384|consensus

Probab=98.75  E-value=9.4e-09  Score=82.15  Aligned_cols=35  Identities=37%  Similarity=0.633  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHhc
Q psy17228         17 TIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWT   51 (99)
Q Consensus        17 ~~~~a~~~i~~i~~~~~~pilVGGTglYi~all~g   51 (99)
                      |..+|...|++|++||++|||||||++|++||+.+
T Consensus        81 F~~~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~  115 (348)
T KOG1384|consen   81 FEDDASRAIEEIHSRGKLPIVVGGSNSYLQALLSK  115 (348)
T ss_pred             HHHHHHHHHHHHHhCCCCCEEeCCchhhHHHHhhc
Confidence            66899999999999999999999999999999999

>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]

Probab=93.16  E-value=0.085  Score=42.73  Aligned_cols=25  Identities=40%  Similarity=0.732  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHhcCCceEEEcccH
Q psy17228         18 IKLTKTKIDDILQRNKVPIIVGGTN   42 (99)
Q Consensus        18 ~~~a~~~i~~i~~~~~~pilVGGTg   42 (99)
                      .++|.+.++++++.=++||++||||
T Consensus       184 ~~EAak~lEdvLqAVdvPiiiGGSG  208 (403)
T COG2069         184 AKEAAKTLEDVLQAVDVPIIIGGSG  208 (403)
T ss_pred             HHHHHHHHHHHHHhcCcCEEecCCC
Confidence            5789999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	99
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	2e-10
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	2e-09
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	2e-07
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	2e-07
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	3e-07
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	4e-07
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	3e-06

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* Length = 409

 Score = 54.6 bits (132), Expect = 2e-10
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 19  KLTKTKIDDILQRNKVPIIVGGTNYYIESLLW 50
                 I+DI +R K+PI+VGGT+YY+++L  
Sbjct: 78  TECMNAIEDIHRRGKIPIVVGGTHYYLQTLFN 109

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Length = 339

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 19  KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRN-- 76
            L    + +I  R K+P++VGG+N +I +LL      +   + ++G  ++   +   +  
Sbjct: 117 SLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCC 176

Query: 77  ---LEHGRDVL 84
              ++    VL
Sbjct: 177 FLWVDVSVKVL 187

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Length = 340

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query: 19  KLTKTKIDDILQRNKVPIIVGGTNYYIESLL 49
           K  +  I DI +R KVPII GGT  YI+SLL
Sbjct: 83  KRAEKYIKDITRRGKVPIIAGGTGLYIQSLL 113

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Length = 322

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 19  KLTKTKIDDILQRNKVPIIVGGTNYYIESLL 49
            L    I +I +R ++P +VGGT  Y+ +++
Sbjct: 79  DLATPLITEIHERGRLPFLVGGTGLYVNAVI 109

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Length = 316

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 19  KLTKTKIDDILQRNKVPIIVGGTNYYIESLL 49
           +    ++ DI    ++P++VGGT  Y ++LL
Sbjct: 86  RDALAEMADITAAGRIPLLVGGTMLYFKALL 116

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Length = 323

 Score = 45.2 bits (108), Expect = 4e-07
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 19  KLTKTKIDDILQRNKVPIIVGGTNYYIESLL 49
                 +     R ++P++VGGT  Y ++LL
Sbjct: 81  ADALAAMAKATARGRIPLLVGGTMLYYKALL 111

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Length = 253

 Score = 42.5 bits (100), Expect = 3e-06
 Identities = 4/30 (13%), Positives = 10/30 (33%)

Query: 19  KLTKTKIDDILQRNKVPIIVGGTNYYIESL 48
                   D  +  +  I+ GG+   +  +
Sbjct: 77  HRRLIFEVDWRKSEEGLILEGGSISLLNCM 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	99.83
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	99.83
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	99.77
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	99.68
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	99.46
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.72
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.15

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=99.83  E-value=2.5e-21  Score=151.52  Aligned_cols=76  Identities=21%  Similarity=0.277  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHhcccCCCCCCCc-----------ccchHhHHHHHhhcchhhchhhh
Q psy17228         16 WTIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNIN-----------DQGEFTLYDMDKIRNLEHGRDVL   84 (99)
Q Consensus        16 ~~~~~a~~~i~~i~~~~~~pilVGGTglYi~all~g~~~~~~~~~~-----------~~~~~~l~~~l~~~d~e~~~~~p   84 (99)
                      -|+++|.+.|++|.++|++|||||||||||+||++|++++.++.++           ..|...||++|+.+|       |
T Consensus        76 ~F~~~a~~~i~~i~~~gk~pIlVGGTglYi~aLl~g~~~~~~~~~~~~R~~l~~~~~~~g~~~L~~~L~~~D-------P  148 (322)
T 3exa_A           76 DFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFVNSYGVQALHDKLSKID-------P  148 (322)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEESCCHHHHHHHHHTCCCCCCBCCHHHHHHHHHHHHHSCHHHHHHHHHTTC-------H
T ss_pred             HHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhC-------H
Confidence            5789999999999999999999999999999999998754221222           136778999999999       9


Q ss_pred             HHhhccCCCCCCCC
Q psy17228         85 ESLWKLDMNYSYRI   98 (99)
Q Consensus        85 ~~A~rI~pnD~~RI   98 (99)
                      ++|++|||||++||
T Consensus       149 ~~A~~i~pnd~~Ri  162 (322)
T 3exa_A          149 KAAAAIHPNNYRRV  162 (322)
T ss_dssp             HHHTTSCTTCHHHH
T ss_pred             HHHhhcCcccHHHH
Confidence            99999999999997

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=99.83  E-value=3.2e-21  Score=150.54  Aligned_cols=75  Identities=20%  Similarity=0.200  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHhcccCCCCCCCcc-----------cchHhHHHHHhhcchhhchhhh
Q psy17228         16 WTIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNIND-----------QGEFTLYDMDKIRNLEHGRDVL   84 (99)
Q Consensus        16 ~~~~~a~~~i~~i~~~~~~pilVGGTglYi~all~g~~~~~~~~~~~-----------~~~~~l~~~l~~~d~e~~~~~p   84 (99)
                      -|+++|.+.|++|+++|++|||||||||||+||++|++ +.|+.++.           .|...+|++|..+|       |
T Consensus        83 ~f~~~a~~~i~~i~~~g~~pilVGGTglYi~all~gl~-~~p~~~~~~R~~l~~~~~~~g~~~l~~~L~~~D-------P  154 (316)
T 3foz_A           83 DFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEGLS-PLPSADPEVRARIEQQAAEQGWESLHRQLQEVD-------P  154 (316)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHSCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------H
T ss_pred             HHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCcC-CCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHhC-------H
Confidence            47789999999999999999999999999999999985 23333332           35667899999999       9


Q ss_pred             HHhhccCCCCCCCC
Q psy17228         85 ESLWKLDMNYSYRI   98 (99)
Q Consensus        85 ~~A~rI~pnD~~RI   98 (99)
                      ++|++|||||++||
T Consensus       155 ~~A~ri~pnd~~Ri  168 (316)
T 3foz_A          155 VAAARIHPNDPQRL  168 (316)
T ss_dssp             HHHHHSCTTCHHHH
T ss_pred             HHHhhCCCccHHHH
Confidence            99999999999997

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=99.77  E-value=8e-20  Score=146.64  Aligned_cols=76  Identities=26%  Similarity=0.369  Sum_probs=64.3

Q ss_pred             hHHHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHhcccCCCCC-CCc----------ccchHhHHHHHhhcchhhchhh
Q psy17228         15 KWTIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT-NIN----------DQGEFTLYDMDKIRNLEHGRDV   83 (99)
Q Consensus        15 ~~~~~~a~~~i~~i~~~~~~pilVGGTglYi~all~g~~~~~~~-~~~----------~~~~~~l~~~l~~~d~e~~~~~   83 (99)
                      ..|.++|..+|++|+++|++|||||||||||+||++|+. +.++ .++          ..|...||++|+.+|       
T Consensus        74 ~~F~~~a~~~i~~i~~~g~~pilVGGTglYi~aLl~gl~-~~~~~~~~~~r~~~~~~~~~g~~~L~~~L~~~D-------  145 (409)
T 3eph_A           74 HRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRV-DTKSSERKLTRKQLDILESTDPDVIYNTLVKCD-------  145 (409)
T ss_dssp             HHHHHHHHHHHHHHHTTTCEEEEECSCGGGGGGGGTCSC-CCSSSCCCCCHHHHHHHTCSSSSSHHHHHHHSC-------
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEECChHHHHHHHHcccc-CCCCccCHHHHHHHHHHhccCHHHHHHHHHHhC-------
Confidence            568899999999999999999999999999999999975 2222 111          124667999999999       


Q ss_pred             hHHhhccCCCCCCCC
Q psy17228         84 LESLWKLDMNYSYRI   98 (99)
Q Consensus        84 p~~A~rI~pnD~~RI   98 (99)
                      |++|++|||||++||
T Consensus       146 P~~A~rihpnd~~Ri  160 (409)
T 3eph_A          146 PDIATKYHPNDYRRV  160 (409)
T ss_dssp             HHHHTTSCTTCHHHH
T ss_pred             HHHHHhcCcccHHHH
Confidence            999999999999997

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=99.68  E-value=1.7e-17  Score=129.35  Aligned_cols=78  Identities=19%  Similarity=0.176  Sum_probs=35.9

Q ss_pred             hHHHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHhccc-CCCCCCC---------cccchHhHHHHHhhcchhhchhhh
Q psy17228         15 KWTIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTIL-LDNKTNI---------NDQGEFTLYDMDKIRNLEHGRDVL   84 (99)
Q Consensus        15 ~~~~~~a~~~i~~i~~~~~~pilVGGTglYi~all~g~~-~~~~~~~---------~~~~~~~l~~~l~~~d~e~~~~~p   84 (99)
                      .-|.+.+.++|+++.++|+.||+|||||+|++||++|+. +|..+..         ...|...+|++|+.+|       |
T Consensus        77 ~~F~~~a~~~i~~i~~~g~~~IlvGGt~~y~~all~g~~~~p~~~~~~R~~l~~~~~~~g~~~l~~~L~~~D-------p  149 (323)
T 3crm_A           77 AEFRADALAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQAEGWEALHRQLAEVD-------P  149 (323)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHCCC------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEEECCchhhHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHhC-------H
Confidence            458889999999999999999999999999999999974 3321111         1235567889999999       9


Q ss_pred             HHhhccCCCCCCCCC
Q psy17228         85 ESLWKLDMNYSYRIE   99 (99)
Q Consensus        85 ~~A~rI~pnD~~RI~   99 (99)
                      ++|++|||||++||.
T Consensus       150 ~~a~~i~~nd~~Ri~  164 (323)
T 3crm_A          150 ESAARIHPNDPQRLM  164 (323)
T ss_dssp             ---------------
T ss_pred             HHHhhcCCCCHHHHH
Confidence            999999999999983

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=99.46  E-value=4.8e-14  Score=110.53  Aligned_cols=77  Identities=31%  Similarity=0.330  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHhccc-CCC-CCCC------------cccchHhHHHHHhhcchhhc
Q psy17228         15 KWTIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTIL-LDN-KTNI------------NDQGEFTLYDMDKIRNLEHG   80 (99)
Q Consensus        15 ~~~~~~a~~~i~~i~~~~~~pilVGGTglYi~all~g~~-~~~-~~~~------------~~~~~~~l~~~l~~~d~e~~   80 (99)
                      .-|.+.+...++++.++|+.||||||||+|++++++|++ ++. .+.+            ...|...+++.|..+|    
T Consensus        79 ~dF~~~a~~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~~~~~~~d~~~~~Rlrrrl~r~~~~G~~~l~~~L~~vd----  154 (340)
T 3d3q_A           79 YEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKLKLKELEHLNNNKLHEYLASFD----  154 (340)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBCSCCC---CCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHhCCCcEEEECChhhhHHHHHhcccccCCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHhhC----
Confidence            357788999999999999999999999999999999984 332 1111            1234556788888888    


Q ss_pred             hhhhHHhhccCCCCCCCC
Q psy17228         81 RDVLESLWKLDMNYSYRI   98 (99)
Q Consensus        81 ~~~p~~A~rI~pnD~~RI   98 (99)
                         |.+|++|||||++||
T Consensus       155 ---P~~a~~I~p~d~~Ri  169 (340)
T 3d3q_A          155 ---KESAKDIHPNNRKRV  169 (340)
T ss_dssp             ---HHHHHHSCTTCHHHH
T ss_pred             ---cHHHhhcCccCchhh
Confidence               999999999999997

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.72  E-value=1e-08  Score=80.41  Aligned_cols=38  Identities=32%  Similarity=0.511  Sum_probs=36.1

Q ss_pred             hHHHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHhcc
Q psy17228         15 KWTIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTI   52 (99)
Q Consensus        15 ~~~~~~a~~~i~~i~~~~~~pilVGGTglYi~all~g~   52 (99)
                      ..|.++|.++|++|.++|++||+|||||+|++++++|+
T Consensus       113 ~~F~~~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~  150 (339)
T 3a8t_A          113 ADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDR  150 (339)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSS
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCC
Confidence            56889999999999999999999999999999999996

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.15  E-value=0.0043  Score=45.18  Aligned_cols=36  Identities=11%  Similarity=0.116  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHhc
Q psy17228         15 KWTIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWT   51 (99)
Q Consensus        15 ~~~~~~a~~~i~~i~~~~~~pilVGGTglYi~all~g   51 (99)
                      .-|.+.+...+ ++.++|+.||++||++.|+++++.+
T Consensus        74 ~~f~~~~~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~  109 (253)
T 2ze6_A           74 ESAHRRLIFEV-DWRKSEEGLILEGGSISLLNCMAKS  109 (253)
T ss_dssp             HHHHHHHHHHH-HTTTTSSEEEEEECCHHHHHHHHHC
T ss_pred             HHHHHHHHHHH-HHHhCCCCeEEeccHHHHHHHHHhc
Confidence            34667788888 8889999999999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	99
d2a0ma1	298	Arginase {Trypanosoma cruzi [TaxId: 5693]}	82.23

>d2a0ma1 c.42.1.1 (A:13-310) Arginase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Arginase-like amidino hydrolases
domain: Arginase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.23  E-value=0.75  Score=32.51  Aligned_cols=36  Identities=19%  Similarity=0.229  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHhcCCceEEEcccHHHHHHHHhc
Q psy17228         16 WTIKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWT   51 (99)
Q Consensus        16 ~~~~~a~~~i~~i~~~~~~pilVGGTglYi~all~g   51 (99)
                      -..+...+.+.+++++|+.||++||..----+++.|
T Consensus        84 ~~~~~i~~~v~~~~~~g~~pivlGGdHsit~~~~~a  119 (298)
T d2a0ma1          84 EAHEKLESKVFTVLARGAFPFVIGGGNDQSAPNGRA  119 (298)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCeeeeecCCcchhHHHHhh
Confidence            345677778888999999999999955433344444