Psyllid ID: psy17229

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
Protein Sequence
MVLIPQFPHLDTATGGVVCRASQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEcccccccccccccHEEHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHccccccccccccccccccHHHHHHHccHHHHHHHHcccHHcHHHHccccccccccccccccccccccHHHHHHHccccc
Coil and Loop (DISEMBL)
mvlipqfphldtatggvvcrasqiddilqrnkvpiivggtNYYIESLLWTILLDnktnineqgeftlydidkmrnlehGRDVLEGLWKLDkeekddlfkvhdtdkidelegendkrdnkreDLFKVHNAGK
Flexible Loop (DISEMBL)
mvlipqfphldtatggVVCRAsqiddilqrnkvpiiVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVLEGLWKLdkeekddlfkvhdtdkidelegendkrdnkredlfkvhnagk
Low Complexity Region (SEG)
MVLIPQFPHLDTATGGVVCRASQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVleglwkldkeekddlFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK
Disordered region (IsUnstruct)
***IPQFPHLDTATGGVVCRASQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVLEGLWKLDK****************************************
Disordered Region (DISOPRED)
*VLIPQFPHLDTATGGVVCRASQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHN***
Disordered Region (DISEMBL)
MVLIPQFPHLDTATGGVVCRASQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK
Disordered Region (DISPRO)
*VLIPQFPHLDTATGGVVCRASQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNK*********TLYDIDKMRNLEHGRDVLEGLWKLDKEEKDDLFKVHDTDKID*****************KVHNA**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLIPQFPHLDTATGGVVCRASQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	131	2.2.26 [Sep-21-2011]
Q80UN9	467	tRNA dimethylallyltransfe	yes	N/A	0.610	0.171	0.409	3e-08
Q9H3H1	467	tRNA dimethylallyltransfe	yes	N/A	0.251	0.070	0.666	7e-08
A0Q0M8	314	tRNA dimethylallyltransfe	yes	N/A	0.732	0.305	0.315	0.0002
Q9ZUX7	466	tRNA dimethylallyltransfe	yes	N/A	0.526	0.148	0.347	0.0003
Q4L610	332	tRNA dimethylallyltransfe	yes	N/A	0.557	0.219	0.337	0.0007
Q3A503	314	tRNA dimethylallyltransfe	yes	N/A	0.267	0.111	0.513	0.0008

>sp|Q80UN9|MOD5_MOUSE tRNA dimethylallyltransferase, mitochondrial OS=Mus musculus GN=Trit1 PE=2 SV=2

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
           I+DI  R+K+PI+VGGTNYYIESLLW +L+  K    E G   + D       E G ++ 
Sbjct: 106 IEDIFARDKIPIVVGGTNYYIESLLWKVLITTKP--QEMGTGKVVDRKVELEKEDGHELH 163

Query: 84  EGLWKLDKEEKDDLFKVHDTDKI 106
           + L ++D E    L   HD  K+
Sbjct: 164 KRLSQVDPEMAAKLHP-HDKRKV 185

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 of both cytosolic and mitochondrial tRNAs, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 7EC: 5

>sp|Q9H3H1|MOD5_HUMAN tRNA dimethylallyltransferase, mitochondrial OS=Homo sapiens GN=TRIT1 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 29/33 (87%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNK 56
           I+DI  R+K+PI+VGGTNYYIESLLW +L++ K
Sbjct: 106 IEDIFARDKIPIVVGGTNYYIESLLWKVLVNTK 138

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 of both cytosolic and mitochondrial tRNAs, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|A0Q0M8|MIAA_CLONN tRNA dimethylallyltransferase OS=Clostridium novyi (strain NT) GN=miaA PE=3 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 15/111 (13%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNL--EHGRD 81
           I DI  R K+P+IVGGT +YI+SL++     N     E  E        ++NL  EHG++
Sbjct: 85  IKDIASRGKLPMIVGGTGFYIDSLIFNYDFANTYKDEEYRE-------HLKNLASEHGKE 137

Query: 82  VLEGLWK------LDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKV 126
            +  L K        K   +DL +V    ++ +L G+     NK +D+F +
Sbjct: 138 YVHELLKDIDEVSYKKLYPNDLKRVIRALEVFKLTGKTISEFNKEQDIFDI 188

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Clostridium novyi (strain NT) (taxid: 386415)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|Q9ZUX7|IPT2_ARATH tRNA dimethylallyltransferase 2 OS=Arabidopsis thaliana GN=IPT2 PE=1 SV=2

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQG---EFTLYDIDKMRNLEHGR 80
           I++I+ RN +P++VGGT+YYI++++   LLD+     E+      ++ D D +     GR
Sbjct: 102 IEEIVSRNHIPVLVGGTHYYIQAVVSKFLLDDAAEDTEECCADVASVVDQDMVVESVFGR 161

Query: 81  DVLEGLWKLDKE 92
           D L   ++L KE
Sbjct: 162 DDLSHGYELLKE 173

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A). Involved in the cis-type cytokinin biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|Q4L610|MIAA_STAHJ tRNA dimethylallyltransferase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=miaA PE=3 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
           I+DI  R K+PII GGT  YI+SL++    D++T   E  + T   + K+  L + ++V 
Sbjct: 89  IEDITSRGKIPIIAGGTGLYIQSLIYDYPFDDETVSKEVEQKTQLQLQKLEPLTN-QEVH 147

Query: 84  EGLWKLDKEEKDDL 97
           + L   D +   D+
Sbjct: 148 DYLATFDPQSAKDI 161

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Staphylococcus haemolyticus (strain JCSC1435) (taxid: 279808)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|Q3A503|MIAA1_PELCD tRNA dimethylallyltransferase 1 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=miaA1 PE=3 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 2/37 (5%)

Query: 14  TGGVVCRASQ--IDDILQRNKVPIIVGGTNYYIESLL 48
           T G  CR  +  ++DIL RN++PI+VGGT  YI++LL
Sbjct: 80  TAGNFCRLGRQALNDILGRNRLPIVVGGTGLYIQALL 116

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) (taxid: 338963)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
363742426	448	PREDICTED: tRNA dimethylallyltransferase	0.587	0.171	0.414	1e-07
348542152	482	PREDICTED: tRNA dimethylallyltransferase	0.297	0.080	0.692	3e-07
58332462	457	tRNA isopentenyltransferase 1 [Xenopus (	0.259	0.074	0.735	6e-07
89268175	444	tRNA isopentenyltransferase 1 [Xenopus (	0.259	0.076	0.735	6e-07
380019144	901	PREDICTED: uncharacterized protein LOC10	0.244	0.035	0.75	6e-07
47229482	454	unnamed protein product [Tetraodon nigro	0.251	0.072	0.787	9e-07
350585918	412	PREDICTED: tRNA dimethylallyltransferase	0.610	0.194	0.409	9e-07
30048434	463	Trit1 protein, partial [Mus musculus]	0.610	0.172	0.409	2e-06
449488971	552	PREDICTED: tRNA dimethylallyltransferase	0.580	0.137	0.402	2e-06
410911182	446	PREDICTED: tRNA dimethylallyltransferase	0.251	0.073	0.787	2e-06

>gi|363742426|ref|XP_417825.3| PREDICTED: tRNA dimethylallyltransferase, mitochondrial [Gallus gallus]

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
           I+DI  R+K+PI+VGGTNYYIESLLW +L++ K +    G FT    D+   LE   D +
Sbjct: 97  IEDIFARDKIPIVVGGTNYYIESLLWKVLVNTKKSTMVSGTFT----DRKVELEQ-LDAV 151

Query: 84  EGLWKLDKEEKDDLFKVHDTDK 105
           +   +L + + +   K+H  DK
Sbjct: 152 DLHRRLSQVDPEMAAKLHPNDK 173

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348542152|ref|XP_003458550.1| PREDICTED: tRNA dimethylallyltransferase, mitochondrial-like [Oreochromis niloticus]

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/39 (69%), Positives = 33/39 (84%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQ 62
           IDD+ +RNK+PIIVGGTNYYIESLLW +LLD   + NE+
Sbjct: 101 IDDMHKRNKLPIIVGGTNYYIESLLWKVLLDTGVSENEE 139

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|58332462|ref|NP_001011306.1| tRNA isopentenyltransferase 1 [Xenopus (Silurana) tropicalis] gi|56789100|gb|AAH88030.1| tRNA isopentenyltransferase 1 [Xenopus (Silurana) tropicalis]

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 29/34 (85%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 57
           I+DI  RNK+PI+VGGTNYYIESLLW ILL+  T
Sbjct: 93  IEDIFSRNKIPIVVGGTNYYIESLLWKILLNTVT 126

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|89268175|emb|CAJ82129.1| tRNA isopentenyltransferase 1 [Xenopus (Silurana) tropicalis]

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 29/34 (85%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 57
           I+DI  RNK+PI+VGGTNYYIESLLW ILL+  T
Sbjct: 80  IEDIFSRNKIPIVVGGTNYYIESLLWKILLNTVT 113

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|380019144|ref|XP_003693474.1| PREDICTED: uncharacterized protein LOC100868799 [Apis florea]

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/32 (75%), Positives = 29/32 (90%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLLWTILLDN 55
           IDD+L R K+PIIVGGTNYYIES+LW +L+DN
Sbjct: 553 IDDLLTRRKLPIIVGGTNYYIESILWEVLMDN 584

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|47229482|emb|CAF99470.1| unnamed protein product [Tetraodon nigroviridis]

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/33 (78%), Positives = 29/33 (87%)

Query: 22  SQIDDILQRNKVPIIVGGTNYYIESLLWTILLD 54
           S IDD+  RNK+PIIVGGTNYYIESLLW +LLD
Sbjct: 99  SLIDDMRSRNKLPIIVGGTNYYIESLLWKVLLD 131

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|350585918|ref|XP_003127869.2| PREDICTED: tRNA dimethylallyltransferase, mitochondrial, partial [Sus scrofa]

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
           I+DI  R+K+PI+VGGTNYYIESLLW +L++ K    E G   + D       E G ++ 
Sbjct: 48  IEDIFARDKIPIVVGGTNYYIESLLWKVLVNTKP--QEMGTKKVIDRKAELEKEDGHELH 105

Query: 84  EGLWKLDKEEKDDLFKVHDTDKI 106
           + L ++D E    L   HD  K+
Sbjct: 106 KRLSQVDPEMAAKLHP-HDKRKV 127

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|30048434|gb|AAH51040.1| Trit1 protein, partial [Mus musculus]

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
           I+DI  R+K+PI+VGGTNYYIESLLW +L+  K    E G   + D       E G ++ 
Sbjct: 102 IEDIFARDKIPIVVGGTNYYIESLLWKVLITTKP--QEMGTGKVVDRKVELEKEDGHELH 159

Query: 84  EGLWKLDKEEKDDLFKVHDTDKI 106
           + L ++D E    L   HD  K+
Sbjct: 160 KRLSQVDPEMAAKLHP-HDKRKV 181

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449488971|ref|XP_002193412.2| PREDICTED: tRNA dimethylallyltransferase, mitochondrial [Taeniopygia guttata]

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 6/82 (7%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
           I+DI  R+K+PI+VGGTNYYIESLLW +L++ K +          D D+   LE   D  
Sbjct: 202 IEDIFARDKIPIVVGGTNYYIESLLWKVLINTKPS-----SVPRPDSDRREELEQ-LDSA 255

Query: 84  EGLWKLDKEEKDDLFKVHDTDK 105
           E   +L + + +   K+H  DK
Sbjct: 256 ELHRRLSQVDPEMAAKLHPHDK 277

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410911182|ref|XP_003969069.1| PREDICTED: tRNA dimethylallyltransferase, mitochondrial-like [Takifugu rubripes]

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/33 (78%), Positives = 29/33 (87%)

Query: 22  SQIDDILQRNKVPIIVGGTNYYIESLLWTILLD 54
           S IDD+  RNK+PIIVGGTNYYIESLLW +LLD
Sbjct: 99  SLIDDMQSRNKLPIIVGGTNYYIESLLWKVLLD 131

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
UNIPROTKB|Q9H3H1	467	TRIT1 "tRNA dimethylallyltrans	0.381	0.107	0.537	3.3e-09
UNIPROTKB|B4E3K2	144	TRIT1 "tRNA dimethylallyltrans	0.274	0.25	0.611	7.6e-09
UNIPROTKB|E1C6R1	459	TRIT1 "Uncharacterized protein	0.610	0.174	0.395	3.9e-08
UNIPROTKB|F6RA00	467	TRIT1 "Uncharacterized protein	0.381	0.107	0.537	1.4e-07
MGI|MGI:1914216	467	Trit1 "tRNA isopentenyltransfe	0.435	0.122	0.457	1.4e-07
UNIPROTKB|F1SMC5	413	TRIT1 "Uncharacterized protein	0.366	0.116	0.538	1.4e-07
ZFIN|ZDB-GENE-060503-297	455	trit1 "tRNA isopentenyltransfe	0.244	0.070	0.593	2.5e-07
DICTYBASE|DDB_G0291528	522	iptB "putative isopentenyltran	0.412	0.103	0.475	3.1e-07
RGD|1304781	479	Trit1 "tRNA isopentenyltransfe	0.366	0.100	0.519	5e-07
UNIPROTKB|F1Q3P4	468	TRIT1 "Uncharacterized protein	0.358	0.100	0.529	1.7e-06

UNIPROTKB|Q9H3H1 TRIT1 "tRNA dimethylallyltransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 131 (51.2 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
 Identities = 29/54 (53%), Positives = 37/54 (68%)

Query:    24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLE 77
             I+DI  R+K+PI+VGGTNYYIESLLW +L++ K    E G  T   ID+   LE
Sbjct:   106 IEDIFARDKIPIVVGGTNYYIESLLWKVLVNTKPQ--EMG--TEKVIDRKVELE 155

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0052381 "tRNA dimethylallyltransferase activity" evidence=TAS

GO:0008033 "tRNA processing" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|B4E3K2 TRIT1 "tRNA dimethylallyltransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 22/36 (61%), Positives = 31/36 (86%)

Query:    24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNI 59
             I+DI  R+K+PI+VGGTNYYIESLLW +L++ K ++
Sbjct:   106 IEDIFARDKIPIVVGGTNYYIESLLWKVLVNTKVSL 141

GO:0005524 "ATP binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|E1C6R1 TRIT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 134 (52.2 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 34/86 (39%), Positives = 43/86 (50%)

Query:    21 ASQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINE-QGEFTLYDIDKMRNLEHG 79
             A  I+DI  R+K+PI+VGGTNYYIESLLW +L++ K       G FT    D+   LE  
Sbjct:   104 ALHIEDIFARDKIPIVVGGTNYYIESLLWKVLVNTKEKSTMVSGTFT----DRKVELEQ- 158

Query:    80 RDVXXXXXXXXXXXXXXXFKVHDTDK 105
              D                 K+H  DK
Sbjct:   159 LDAVDLHRRLSQVDPEMAAKLHPNDK 184

GO:0008033 "tRNA processing" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F6RA00 TRIT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 129 (50.5 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 29/54 (53%), Positives = 37/54 (68%)

Query:    24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLE 77
             I+DI  R+K+PI+VGGTNYYIESLLW +L++ K    E G  T   ID+   LE
Sbjct:   106 IEDIFARDKIPIVVGGTNYYIESLLWKVLVNAKPQ--EMG--TEKVIDRKVELE 155

GO:0005739 "mitochondrion" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:1914216 Trit1 "tRNA isopentenyltransferase 1" [Mus musculus (taxid:10090)]

 Score = 129 (50.5 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 27/59 (45%), Positives = 36/59 (61%)

Query:    24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDV 82
             I+DI  R+K+PI+VGGTNYYIESLLW +L+  K    E G   + D       E G ++
Sbjct:   106 IEDIFARDKIPIVVGGTNYYIESLLWKVLITTKPQ--EMGTGKVVDRKVELEKEDGHEL 162

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008033 "tRNA processing" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0052381 "tRNA dimethylallyltransferase activity" evidence=IEA

UNIPROTKB|F1SMC5 TRIT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 128 (50.1 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 28/52 (53%), Positives = 35/52 (67%)

Query:    26 DILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLE 77
             DI  R+K+PI+VGGTNYYIESLLW +L++ K    E G  T   ID+   LE
Sbjct:    51 DIFARDKIPIVVGGTNYYIESLLWKVLVNTKPQ--EMG--TKKVIDRKAELE 98

GO:0005739 "mitochondrion" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-060503-297 trit1 "tRNA isopentenyltransferase 1" [Danio rerio (taxid:7955)]

 Score = 114 (45.2 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 19/32 (59%), Positives = 27/32 (84%)

Query:    23 QIDDILQRNKVPIIVGGTNYYIESLLWTILLD 54
             +I ++  R K+P+IVGGTNYYIES+LW +L+D
Sbjct:   104 RIQNMHHRKKLPVIVGGTNYYIESILWKVLID 135

GO:0008033 "tRNA processing" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

DICTYBASE|DDB_G0291528 iptB "putative isopentenyltransferase" [Dictyostelium discoideum (taxid:44689)]

 Score = 106 (42.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
 Identities = 29/61 (47%), Positives = 36/61 (59%)

Query:     7 FPHLDTATGGVVCRASQ----IDDILQRNKVPIIVGGTNYYIESLLWT---ILLDNKTNI 59
             F  +DT    V   AS+    I DIL R K+PI+VGGT+YY  SLLW+   I LD+  N 
Sbjct:    67 FLPIDTLNYNVADFASKALGIIRDILSRGKLPIVVGGTHYYTCSLLWSDSIISLDDNDNN 126

Query:    60 N 60
             N
Sbjct:   127 N 127

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

RGD|1304781 Trit1 "tRNA isopentenyltransferase 1" [Rattus norvegicus (taxid:10116)]

 Score = 124 (48.7 bits), Expect = 5.0e-07, P = 5.0e-07
 Identities = 27/52 (51%), Positives = 34/52 (65%)

Query:    26 DILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLE 77
             DI  R+K+PI+VGGTNYYIESLLW +L+  K     QG  T   +D+   LE
Sbjct:   122 DIFARDKIPIVVGGTNYYIESLLWKVLVTTKP----QGMGTGKAVDRKVELE 169

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0008033 "tRNA processing" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|F1Q3P4 TRIT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 119 (46.9 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 27/51 (52%), Positives = 34/51 (66%)

Query:    27 ILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLE 77
             I  R+K+PI+VGGTNYYIESLLW +L++ K    E G  T   ID+   LE
Sbjct:   110 IFARDKIPIVVGGTNYYIESLLWKVLVNTKPQ--EMG--TEKVIDRKVELE 156

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	131
PLN02748	468	PLN02748, PLN02748, tRNA dimethylallyltransferase	7e-07
PRK00091	307	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosp	1e-06
COG0324	308	COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosph	4e-06
pfam01715	253	pfam01715, IPPT, IPP transferase	3e-05
TIGR00174	287	TIGR00174, miaA, tRNA dimethylallyltransferase	8e-04
PLN02165	334	PLN02165, PLN02165, adenylate isopentenyltransfera	0.001

>gnl|CDD|215399 PLN02748, PLN02748, tRNA dimethylallyltransferase

 Score = 46.4 bits (110), Expect = 7e-07
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLY-----DIDKMRNLEH 78
           I++IL RN +P+IVGGTNYYI++L+   LLD+     E   F +       +D    L  
Sbjct: 104 IEEILSRNGLPVIVGGTNYYIQALVSPFLLDDMAEETEDCTFVVASVLDEHMDVESGL-- 161

Query: 79  GRDVLEGLWKLDKE 92
           G D  +  ++L KE
Sbjct: 162 GNDDEDHGYELLKE 175

Length = 468

>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

 Score = 45.5 bits (109), Expect = 1e-06
 Identities = 16/25 (64%), Positives = 20/25 (80%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLL 48
           I DIL R K+PI+VGGT  YI++LL
Sbjct: 86  IADILARGKLPILVGGTGLYIKALL 110

Length = 307

>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 16/25 (64%), Positives = 21/25 (84%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLL 48
           IDDIL R K+PI+VGGT  Y+++LL
Sbjct: 85  IDDILARGKLPILVGGTGLYLKALL 109

Length = 308

>gnl|CDD|216659 pfam01715, IPPT, IPP transferase

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 24 IDDILQRNKVPIIVGGTNYYIESLL 48
          I +I  R K+P++VGGT  Y ++LL
Sbjct: 49 IAEIRARGKIPLLVGGTGLYFKALL 73

This is a family of IPP transferases EC:2.5.1.8 also known as tRNA delta(2)-isopentenylpyrophosphate transferase. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37). Length = 253

>gnl|CDD|213512 TIGR00174, miaA, tRNA dimethylallyltransferase

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 13/25 (52%), Positives = 19/25 (76%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLL 48
           I DI  R K+P++VGGT  Y+++LL
Sbjct: 81  IADITARGKIPLLVGGTGLYLKALL 105

Alternate names include delta(2)-isopentenylpyrophosphate transferase, IPP transferase, 2-methylthio-N6-isopentyladenosine tRNA modification enzyme. Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine. Understanding of substrate specificity has changed [Protein synthesis, tRNA and rRNA base modification]. Length = 287

>gnl|CDD|177823 PLN02165, PLN02165, adenylate isopentenyltransferase

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLL 48
           I +I  R K+PI+ GG+N +I +LL
Sbjct: 126 ISEITSRQKLPIVAGGSNSFIHALL 150

Length = 334

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	131
PF01715	253	IPPT: IPP transferase; InterPro: IPR002627 tRNA is	100.0
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	100.0
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	99.97
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	99.97
PLN02748	468	tRNA dimethylallyltransferase	99.97
PLN02840	421	tRNA dimethylallyltransferase	99.97
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	99.95
KOG1384|consensus	348		99.33
PLN02165	334	adenylate isopentenyltransferase	99.28
COG2069	403	CdhD CO dehydrogenase/acetyl-CoA synthase delta su	84.62
cd04235	308	AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes bot	80.9

>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2

Probab=100.00  E-value=8.4e-35  Score=230.60  Aligned_cols=110  Identities=30%  Similarity=0.344  Sum_probs=91.0

Q ss_pred             cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCCCcchhhhhhhhhhcccchH
Q psy17229          3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGR   80 (131)
Q Consensus         3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~   80 (131)
                      ||++++|+++|||++|+++  ++|++|+++||+||||||||||++||++|+. +.    |+.++.+|            .
T Consensus        26 lid~~~p~e~ysv~~f~~~a~~~i~~i~~rgk~PIlvGGTglYi~all~g~~-~~----p~~~~~~r------------~   88 (253)
T PF01715_consen   26 LIDILDPDEEYSVGDFQRDAREAIEDILARGKIPILVGGTGLYIQALLNGLA-DI----PEVDPELR------------A   88 (253)
T ss_dssp             SSS-B-TTS---HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTS---T----SSSHHHHH------------H
T ss_pred             eeeeecccCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHHHhChh-hh----ccccHHHH------------H
Confidence            7899999999999999997  8999999999999999999999999999986 44    34567777            7


Q ss_pred             HHHHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229         81 DVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK  131 (131)
Q Consensus        81 ~~~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~  131 (131)
                      .+++.++..|.++||++|+++||++|++| ||||++||+||||| +..||+
T Consensus        89 ~~~~~~~~~~~~~l~~~L~~~DP~~A~~i-~~nd~~Ri~RALei-~~~tG~  137 (253)
T PF01715_consen   89 ELRAELEEEGNEELYEELKEVDPEAAAKI-HPNDRRRIIRALEI-YELTGK  137 (253)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHC-HHHHCTS--TT-HHHHHHHHHH-HHHHSS
T ss_pred             HHHHHHHhccHHHHHHHHHhhCcHhhhcC-CCCcHHHHHHHHHH-HHhcCC
Confidence            88888999999999999999999999999 99999999999999 888886

5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=100.00  E-value=2.8e-33  Score=226.86  Aligned_cols=110  Identities=19%  Similarity=0.211  Sum_probs=100.1

Q ss_pred             cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCCCcchhhhhhhhhhcccchH
Q psy17229          3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGR   80 (131)
Q Consensus         3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~   80 (131)
                      ||++++|.+.|||++|+++  ++|++|+++||+||||||||||++||++|+. ..    |+.++.+|            .
T Consensus        62 lid~~~p~e~~sv~~f~~~a~~~i~~i~~~gk~PilvGGTglYi~all~gl~-~~----p~~~~~~r------------~  124 (300)
T PRK14729         62 LVDFLEPIKEYNLGIFYKEALKIIKELRQQKKIPIFVGGSAFYFKHLKYGLP-ST----PPVSSKIR------------I  124 (300)
T ss_pred             eeeccCCCCceeHHHHHHHHHHHHHHHHHCCCCEEEEeCchHHHHHHHcCCC-CC----CCCCHHHH------------H
Confidence            7889999999999999997  8999999999999999999999999999975 33    34466677            6


Q ss_pred             HHHHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229         81 DVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK  131 (131)
Q Consensus        81 ~~~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~  131 (131)
                      .+.+.++..|.++||++|+++||++|++| ||||++||+||||| +..||+
T Consensus       125 ~~~~~~~~~g~~~l~~~L~~~DP~~A~~i-~pnd~~Ri~RALEv-~~~tG~  173 (300)
T PRK14729        125 YVNNLFTLKGKSYLLEELKRVDFIRYESI-NKNDIYRIKRSLEV-YYQTGI  173 (300)
T ss_pred             HHHHHHHhcCHHHHHHHHHhcCHHHHhhC-CcCCHHHHHHHHHH-HHHhCC
Confidence            77777888999999999999999999999 99999999999999 888986

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=5.1e-32  Score=219.87  Aligned_cols=110  Identities=27%  Similarity=0.298  Sum_probs=102.3

Q ss_pred             cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCCCcchhhhhhhhhhcccchH
Q psy17229          3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGR   80 (131)
Q Consensus         3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~   80 (131)
                      ||++.+|.+.|||++|.++  ..|++|.+|||+||||||||||++||+.|+. ..    |+.++.+|            .
T Consensus        62 liDi~~p~e~ysa~~f~~~a~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~-~~----p~~~~~~r------------~  124 (308)
T COG0324          62 LIDIRDPTESYSAAEFQRDALAAIDDILARGKLPILVGGTGLYLKALLEGLS-LL----PEADPEVR------------R  124 (308)
T ss_pred             EecccCccccccHHHHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCC-CC----CCCCHHHH------------H
Confidence            7899999999999999997  8999999999999999999999999999987 44    45667777            7


Q ss_pred             HHHHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229         81 DVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK  131 (131)
Q Consensus        81 ~~~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~  131 (131)
                      .++.+++..|+.+||+.|+++||++|++| ||||++|++||||| +..|||
T Consensus       125 ~~~~~~~~~g~~~L~~~L~~~Dp~~a~~i-~pnD~~Ri~RALEv-~~~tGk  173 (308)
T COG0324         125 RLEAELAELGNDALHAELKKIDPEAAAKI-HPNDPQRIIRALEV-YYLTGK  173 (308)
T ss_pred             HHHHHHHhcCHHHHHHHHHhhCHHHHHhc-CCCchhHHHHHHHH-HHHHCC
Confidence            77889999999999999999999999999 99999999999999 999986

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=99.97  E-value=1.6e-31  Score=215.48  Aligned_cols=110  Identities=21%  Similarity=0.221  Sum_probs=100.0

Q ss_pred             cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCCCcchhhhhhhhhhcccchH
Q psy17229          3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGR   80 (131)
Q Consensus         3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~   80 (131)
                      +|+++++.+.|||++|..+  ++|++++++||+|||||||||||+||++|+. ..    |+.++.+|            .
T Consensus        58 lid~~~~~~~~~v~~f~~~a~~~i~~~~~~g~~pi~vGGTg~Yi~all~g~~-~~----p~~~~~~r------------~  120 (287)
T TIGR00174        58 LIDILDPSESYSAADFQTLALNAIADITARGKIPLLVGGTGLYLKALLEGLS-PT----PSADKLIR------------E  120 (287)
T ss_pred             EEEEechhheEcHHHHHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHcCCC-CC----CCCCHHHH------------H
Confidence            6778899999999999997  8999999999999999999999999999986 33    34466777            7


Q ss_pred             HHHHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229         81 DVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK  131 (131)
Q Consensus        81 ~~~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~  131 (131)
                      .+.+.++..|++++|++|+++||++|++| ||||++||+||||| +..||+
T Consensus       121 ~l~~~~~~~g~~~l~~~L~~~DP~~a~~i-~~nd~~Ri~RALEi-~~~tG~  169 (287)
T TIGR00174       121 QLEILAEEQGWDFLYNELKKVDPVAAAKI-HPNDTRRVQRALEV-FYATGK  169 (287)
T ss_pred             HHHHHHHHcCHHHHHHHHHhcCHHHHHhc-CCccHHHHHHHHHH-HHHHCC
Confidence            77788888999999999999999999999 99999999999999 888986

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PLN02748 tRNA dimethylallyltransferase

Probab=99.97  E-value=2.4e-31  Score=226.06  Aligned_cols=115  Identities=27%  Similarity=0.360  Sum_probs=96.8

Q ss_pred             cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCc-CCCCCC----cchhhhhhhhhhc
Q psy17229          3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNK-TNINEQ----GEFTLYDIDKMRN   75 (131)
Q Consensus         3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~-~~~p~~----~~~~r~~~~~~~~   75 (131)
                      ||.+++|.++|||++|.++  .+|++|++|||+|||||||||||+||++|+.++.. ...|+.    ++.+|        
T Consensus        81 Lid~v~p~e~ysv~~F~~~A~~~I~~I~~rgk~PIlVGGTglYi~aLl~g~~~~~~p~~~~~~~~~~~~~~r--------  152 (468)
T PLN02748         81 LLGVISPSVEFTAKDFRDHAVPLIEEILSRNGLPVIVGGTNYYIQALVSPFLLDDMAEETEDCTFVVASVLD--------  152 (468)
T ss_pred             eEeecCCCCcCcHHHHHHHHHHHHHHHHhcCCCeEEEcChHHHHHHHHcCcccccCCccccccccccCHHHH--------
Confidence            7889999999999999997  89999999999999999999999999999864322 111111    12334        


Q ss_pred             ccchHHH--HHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229         76 LEHGRDV--LEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK  131 (131)
Q Consensus        76 ~~~~~~~--~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~  131 (131)
                          ..+  ...++..|.++||++|+++||++|++| ||||+|||+||||| +..||+
T Consensus       153 ----~~l~~~~~~~~~g~~~l~~~L~~vDP~~A~ri-hpnD~rRI~RALEI-~~~TG~  204 (468)
T PLN02748        153 ----EHMDVESGLGNDDEDHGYELLKELDPVAANRI-HPNNHRKINRYLEL-YATTGV  204 (468)
T ss_pred             ----HHHHHHHHHHhcCHHHHHHHHHhhCHHHHhhc-CCccHHHHHHHHHH-HHHHCc
Confidence                444  356778899999999999999999999 99999999999999 888985

>PLN02840 tRNA dimethylallyltransferase

Probab=99.97  E-value=3.8e-30  Score=216.23  Aligned_cols=109  Identities=25%  Similarity=0.319  Sum_probs=94.3

Q ss_pred             cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCCCcchhhhhhhhhhcccchH
Q psy17229          3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGR   80 (131)
Q Consensus         3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~   80 (131)
                      ||++++|.+.|||++|.++  ++|++|++|||+|||||||||||+||++|+. ..    |+.++++|            .
T Consensus        80 lidil~p~e~ySv~~F~~~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~G~~-~~----p~~~~~~r------------~  142 (421)
T PLN02840         80 LIDILHPSDDYSVGAFFDDARRATQDILNRGRVPIVAGGTGLYLRWYIYGKP-DV----PKSSPEIT------------S  142 (421)
T ss_pred             eEeecCCCCceeHHHHHHHHHHHHHHHHhcCCCEEEEcCccHHHHHHhcCCC-CC----CCCCHHHH------------H
Confidence            7899999999999999997  8999999999999999999999999999986 34    34456666            5


Q ss_pred             HHHHHHHh----cCHHHHHHHH-HhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229         81 DVLEGLWK----LDKEEKDDLF-KVHDTDKIDELEGENDKRDNKREDLFKVHNAGK  131 (131)
Q Consensus        81 ~~~~~l~~----~g~~~l~~~L-~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~  131 (131)
                      .+++.+++    .|++++|++| +.+|| +|++| ||||++||+||||| +..||+
T Consensus       143 ~l~~~l~~~~~~~g~~~l~~~Ll~~~DP-~A~~i-~pnD~~Ri~RALEV-~~~TG~  195 (421)
T PLN02840        143 EVWSELVDFQKNGDWDAAVELVVNAGDP-KARSL-PRNDWYRLRRSLEI-IKSSGS  195 (421)
T ss_pred             HHHHHHHHhccccCHHHHHHHHHhccCc-HHHhc-CCCcHHHHHHHHHH-HHHHCC
Confidence            56666665    4588999985 66799 99999 99999999999999 888885

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=99.95  E-value=3.8e-28  Score=197.36  Aligned_cols=110  Identities=24%  Similarity=0.211  Sum_probs=99.3

Q ss_pred             cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCCCcchhhhhhhhhhcccchH
Q psy17229          3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGR   80 (131)
Q Consensus         3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~   80 (131)
                      +|.+.++.+.||+++|.+.  +.|++++++|++||||||||||++||++|+. ..    |+.++.+|            .
T Consensus        63 lid~~~~~~~~s~~~f~~~a~~~i~~i~~~gk~pIlvGGt~~Y~~al~~g~~-~~----p~~~~~~r------------~  125 (307)
T PRK00091         63 LIDILDPTESYSVADFQRDALAAIADILARGKLPILVGGTGLYIKALLEGLS-PL----PPADPELR------------A  125 (307)
T ss_pred             eecccChhhcccHHHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHhccCCC-CC----CCCCHHHH------------H
Confidence            6788999999999999997  8999999999999999999999999999976 43    44566666            6


Q ss_pred             HHHHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229         81 DVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK  131 (131)
Q Consensus        81 ~~~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~  131 (131)
                      .+.....+.|++++|++|+++||++|++| ||||++||+||||| +..||+
T Consensus       126 ~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i-~~~d~~Ri~RAlEi-~~~tG~  174 (307)
T PRK00091        126 ELEALAAEEGWEALHAELAEIDPEAAARI-HPNDPQRIIRALEV-YELTGK  174 (307)
T ss_pred             HHHHHHHhcCHHHHHHHHHhcCHHHHhhc-CCCCCchhHHHHHH-HHHHCC
Confidence            67777788899999999999999999999 99999999999999 888986

>KOG1384|consensus

Probab=99.33  E-value=1.1e-12  Score=107.64  Aligned_cols=49  Identities=33%  Similarity=0.524  Sum_probs=46.4

Q ss_pred             cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcc
Q psy17229          3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTI   51 (131)
Q Consensus         3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~   51 (131)
                      |++++++...||+++|..+  +.|++|++|||+|||||||++|++||+.+.
T Consensus        66 Llg~l~~~~e~t~~~F~~~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~  116 (348)
T KOG1384|consen   66 LLGHLHPEAEYTAGEFEDDASRAIEEIHSRGKLPIVVGGSNSYLQALLSKR  116 (348)
T ss_pred             HhCcCChHhhccHHHHHHHHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcC
Confidence            6788999999999999997  899999999999999999999999999994

>PLN02165 adenylate isopentenyltransferase

Probab=99.28  E-value=3.3e-12  Score=105.26  Aligned_cols=50  Identities=30%  Similarity=0.460  Sum_probs=45.3

Q ss_pred             cccCCCCCC-ccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhccc
Q psy17229          3 LIPQFPHLD-TATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTIL   52 (131)
Q Consensus         3 ~~~~~~~~e-~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~   52 (131)
                      +++++++.+ .||+++|.++  .+|++|+++|++||+||||||||+||++|+.
T Consensus       102 li~~~~~~~~~~sv~~F~~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~  154 (334)
T PLN02165        102 LLGELNPDDGELTASEFRSLASLSISEITSRQKLPIVAGGSNSFIHALLADRF  154 (334)
T ss_pred             hhheeccccceeeHHHHHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCC
Confidence            566788876 8999999986  8999999999999999999999999999963

>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]

Probab=84.62  E-value=0.68  Score=38.58  Aligned_cols=20  Identities=45%  Similarity=0.916  Sum_probs=18.6

Q ss_pred             HHHHHHHhCCCceEEEcCCh
Q psy17229         22 SQIDDILQRNKVPIIVGGTN   41 (131)
Q Consensus        22 ~~I~~i~~rgkiPIlVGGTg   41 (131)
                      +.++++++.=++||++||||
T Consensus       189 k~lEdvLqAVdvPiiiGGSG  208 (403)
T COG2069         189 KTLEDVLQAVDVPIIIGGSG  208 (403)
T ss_pred             HHHHHHHHhcCcCEEecCCC
Confidence            77999999999999999986

>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP

Probab=80.90  E-value=1.3  Score=36.47  Aligned_cols=20  Identities=20%  Similarity=0.436  Sum_probs=18.2

Q ss_pred             HHHHHHHhCCCceEEEcCCh
Q psy17229         22 SQIDDILQRNKVPIIVGGTN   41 (131)
Q Consensus        22 ~~I~~i~~rgkiPIlVGGTg   41 (131)
                      +.|+.++++|.+||++||+|
T Consensus       172 ~~I~~Ll~~g~IpI~~GggG  191 (308)
T cd04235         172 EAIKTLVDNGVIVIAAGGGG  191 (308)
T ss_pred             HHHHHHHHCCCEEEEECCCc
Confidence            77899999999999999965

Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	131
3d3q_A	340	Crystal Structure Of Trna Delta(2)-Isopentenylpyrop		4e-04

>pdb|3D3Q|A Chain A, Crystal Structure Of Trna Delta(2)-Isopentenylpyrophosphate Transferase (Se0981) From Staphylococcus Epidermidis. Northeast Structural Genomics Consortium Target Ser100 Length = 340

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 24  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 57
           I DI +R KVPII GGT  YI+SLL+    ++++
Sbjct: 89  IKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDES 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	131
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	1e-09
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	6e-09
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	9e-07
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	1e-06
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	1e-06
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	1e-06
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	3e-05

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* Length = 409

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 14/26 (53%), Positives = 22/26 (84%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLLW 49
           I+DI +R K+PI+VGGT+YY+++L  
Sbjct: 84  IEDIHRRGKIPIVVGGTHYYLQTLFN 109

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Length = 339

 Score = 51.5 bits (123), Expect = 6e-09
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGE 64
           + +I  R K+P++VGG+N +I +LL      +   + E+G 
Sbjct: 123 VSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGS 163

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Length = 340

 Score = 45.2 bits (108), Expect = 9e-07
 Identities = 17/25 (68%), Positives = 19/25 (76%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLL 48
           I DI +R KVPII GGT  YI+SLL
Sbjct: 89  IKDITRRGKVPIIAGGTGLYIQSLL 113

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Length = 323

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLL 48
           +     R ++P++VGGT  Y ++LL
Sbjct: 87  MAKATARGRIPLLVGGTMLYYKALL 111

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Length = 322

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLL 48
           I +I +R ++P +VGGT  Y+ +++
Sbjct: 85  ITEIHERGRLPFLVGGTGLYVNAVI 109

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Length = 316

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESLL 48
           + DI    ++P++VGGT  Y ++LL
Sbjct: 92  MADITAAGRIPLLVGGTMLYFKALL 116

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Length = 253

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 4/24 (16%), Positives = 10/24 (41%)

Query: 24  IDDILQRNKVPIIVGGTNYYIESL 47
             D  +  +  I+ GG+   +  +
Sbjct: 83  EVDWRKSEEGLILEGGSISLLNCM 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	131
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	99.98
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	99.98
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	99.96
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	99.94
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	99.89
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	99.08
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.94

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=99.98  E-value=1.5e-32  Score=222.68  Aligned_cols=110  Identities=17%  Similarity=0.168  Sum_probs=101.7

Q ss_pred             cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCCCcchhhhhhhhhhcccchH
Q psy17229          3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGR   80 (131)
Q Consensus         3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~   80 (131)
                      +|++.++.+.||+++|+++  ++|++|+++|++|||||||||||+||++|+. +.    |+.++++|            +
T Consensus        69 lid~~~~~e~~s~~~f~~~a~~~i~~i~~~g~~pilVGGTglYi~all~gl~-~~----p~~~~~~R------------~  131 (316)
T 3foz_A           69 LLDIRDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEGLS-PL----PSADPEVR------------A  131 (316)
T ss_dssp             TSSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHSCCC-CC----CCCCHHHH------------H
T ss_pred             EeccCCccccccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCcC-CC----CCCCHHHH------------H
Confidence            6888999999999999997  7899999999999999999999999999986 44    45677788            7


Q ss_pred             HHHHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229         81 DVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK  131 (131)
Q Consensus        81 ~~~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~  131 (131)
                      .+.+.++..|+++||++|+++||++|++| ||||++||+||||| +..||+
T Consensus       132 ~l~~~~~~~g~~~l~~~L~~~DP~~A~ri-~pnd~~Ri~RALEV-~~~TG~  180 (316)
T 3foz_A          132 RIEQQAAEQGWESLHRQLQEVDPVAAARI-HPNDPQRLSRALEV-FFISGK  180 (316)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHHHHHHS-CTTCHHHHHHHHHH-HHHHSS
T ss_pred             HHHHHHHhcCHHHHHHHHHHhCHHHHhhC-CCccHHHHHHHHHH-HHHHCC
Confidence            88888899999999999999999999999 99999999999999 999986

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=99.98  E-value=3.4e-32  Score=221.11  Aligned_cols=111  Identities=18%  Similarity=0.203  Sum_probs=99.9

Q ss_pred             cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCCCcchhhhhhhhhhcccchH
Q psy17229          3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGR   80 (131)
Q Consensus         3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~   80 (131)
                      +|++.++.+.||+++|+.+  ++|++|+++|++|||||||||||+||++|+.+. +   ++.++.+|            +
T Consensus        62 lid~~~~~e~~s~~~F~~~a~~~i~~i~~~gk~pIlVGGTglYi~aLl~g~~~~-~---~~~~~~~R------------~  125 (322)
T 3exa_A           62 LIDIKDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLG-D---IRADEDYR------------H  125 (322)
T ss_dssp             SSSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEESCCHHHHHHHHHTCCCC-C---CBCCHHHH------------H
T ss_pred             EeccCChhhhccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCCcCC-C---CCCCHHHH------------H
Confidence            6888999999999999997  899999999999999999999999999998632 1   12456777            7


Q ss_pred             HHHHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229         81 DVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK  131 (131)
Q Consensus        81 ~~~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~  131 (131)
                      .+.+.++..|+++||++|+++||++|++| ||||++||+||||| +..||+
T Consensus       126 ~l~~~~~~~g~~~L~~~L~~~DP~~A~~i-~pnd~~Ri~RALEV-~~~TG~  174 (322)
T 3exa_A          126 ELEAFVNSYGVQALHDKLSKIDPKAAAAI-HPNNYRRVIRALEI-IKLTGK  174 (322)
T ss_dssp             HHHHHHHHSCHHHHHHHHHTTCHHHHTTS-CTTCHHHHHHHHHH-HHHTC-
T ss_pred             HHHHHHHhcCHHHHHHHHHhhCHHHHhhc-CcccHHHHHHHHHH-HHHHCC
Confidence            88888999999999999999999999999 99999999999999 899985

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=99.96  E-value=1.6e-29  Score=210.96  Aligned_cols=110  Identities=25%  Similarity=0.346  Sum_probs=94.7

Q ss_pred             cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCCCcchhhhhhhhhhcccchH
Q psy17229          3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGR   80 (131)
Q Consensus         3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~   80 (131)
                      +|.+.++.+.||+++|.+.  .+|++|+++|++|||||||||||+||+.|+. +.+   +..++.+|            .
T Consensus        61 lid~~~~~~~~s~~~F~~~a~~~i~~i~~~g~~pilVGGTglYi~aLl~gl~-~~~---~~~~~~~r------------~  124 (409)
T 3eph_A           61 VMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRV-DTK---SSERKLTR------------K  124 (409)
T ss_dssp             SCSCBCTTSCCCHHHHHHHHHHHHHHHHTTTCEEEEECSCGGGGGGGGTCSC-CCS---SSCCCCCH------------H
T ss_pred             cCCccChHhHhhHHHHHHHHHHHHHHHHhcCCCEEEECChHHHHHHHHcccc-CCC---CccCHHHH------------H
Confidence            6778889999999999997  8999999999999999999999999999975 432   11334443            3


Q ss_pred             HHHHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229         81 DVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK  131 (131)
Q Consensus        81 ~~~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~  131 (131)
                       ....++..|+++||++|+++||++|++| ||||++||+||||| +..||+
T Consensus       125 -~~~~~~~~g~~~L~~~L~~~DP~~A~ri-hpnd~~Ri~RALEV-~~~TG~  172 (409)
T 3eph_A          125 -QLDILESTDPDVIYNTLVKCDPDIATKY-HPNDYRRVQRMLEI-YYKTGK  172 (409)
T ss_dssp             -HHHHHTCSSSSSHHHHHHHSCHHHHTTS-CTTCHHHHHHHHHH-HHHHCS
T ss_pred             -HHHHHhccCHHHHHHHHHHhCHHHHHhc-CcccHHHHHHHHHH-HHHHCC
Confidence             3356777789999999999999999999 99999999999999 888986

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=99.94  E-value=8.4e-28  Score=195.31  Aligned_cols=110  Identities=16%  Similarity=0.145  Sum_probs=45.8

Q ss_pred             cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCCCcchhhhhhhhhhcccchH
Q psy17229          3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGR   80 (131)
Q Consensus         3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~   80 (131)
                      +|.+.++.+.|+++.|.+.  .+|++++++|++||+|||||+|++||++|+. +.|    ..++.+|            .
T Consensus        64 lid~~~~~~~~~~~~F~~~a~~~i~~i~~~g~~~IlvGGt~~y~~all~g~~-~~p----~~~~~~R------------~  126 (323)
T 3crm_A           64 LIDIRDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKALLEGLA-DMP----GADPEVR------------A  126 (323)
T ss_dssp             TSSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHCCC-----------------------------
T ss_pred             EeeccCcccccCHHHHHHHHHHHHHHHHHcCCeEEEECCchhhHHHHHcCCC-CCC----CCCHHHH------------H
Confidence            5677888999999999996  8999999999999999999999999999975 443    4456677            6


Q ss_pred             HHHHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229         81 DVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK  131 (131)
Q Consensus        81 ~~~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~  131 (131)
                      .+.+.+++.|+++||++|+++||++|++| ||||+|||+||||| +..||+
T Consensus       127 ~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i-~~nd~~Ri~RALEv-~~~tG~  175 (323)
T 3crm_A          127 AIEAEAQAEGWEALHRQLAEVDPESAARI-HPNDPQRLMRALEV-YRLGGV  175 (323)
T ss_dssp             ---------------------------------------------------
T ss_pred             HHHHHHHHcCHHHHHHHHHHhCHHHHhhc-CCCCHHHHHHHHHH-HHHHCC
Confidence            77777788899999999999999999999 99999999999999 888886

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=99.89  E-value=6.1e-23  Score=167.73  Aligned_cols=109  Identities=26%  Similarity=0.352  Sum_probs=93.7

Q ss_pred             cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCC-Ccch----hhhhhhhhhc
Q psy17229          3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINE-QGEF----TLYDIDKMRN   75 (131)
Q Consensus         3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~-~~~~----~r~~~~~~~~   75 (131)
                      ++....+.+.|++++|...  ..+.++.++|++||||||||+|++++++++. ..+    + .+++    +|        
T Consensus        66 l~di~~~~~~~~~~dF~~~a~~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~-~~~----~~~d~~~~~Rlr--------  132 (340)
T 3d3q_A           66 MIDILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYA-FED----ESISEDKMKQVK--------  132 (340)
T ss_dssp             SSSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBCSC-CC-------CCHHHHHHHH--------
T ss_pred             HHHHhCCccccCHHHHHHHHHHHHHHHHhCCCcEEEECChhhhHHHHHhccc-ccC----CCCChHHHHHHH--------
Confidence            4566778889999999996  7889999999999999999999999999975 332    3 4455    55        


Q ss_pred             ccchHHHHHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229         76 LEHGRDVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK  131 (131)
Q Consensus        76 ~~~~~~~~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~  131 (131)
                          +.+.. +++.|.+.|++.|+.+||.+|++| ||||++||+||||| +..||+
T Consensus       133 ----rrl~r-~~~~G~~~l~~~L~~vdP~~a~~I-~p~d~~Ri~RALEv-~~~tG~  181 (340)
T 3d3q_A          133 ----LKLKE-LEHLNNNKLHEYLASFDKESAKDI-HPNNRKRVLRAIEY-YLKTKK  181 (340)
T ss_dssp             ----HHHHT-TSSSCHHHHHHHHHHHCHHHHHHS-CTTCHHHHHHHHHH-HHHHCS
T ss_pred             ----HHHHH-HHhcCHHHHHHHHHhhCcHHHhhc-CccCchhhhhHHHH-HHHhCC
Confidence                55555 778899999999999999999999 99999999999999 888986

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=99.08  E-value=9.3e-11  Score=95.70  Aligned_cols=49  Identities=27%  Similarity=0.422  Sum_probs=45.7

Q ss_pred             cccCCCC-CCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcc
Q psy17229          3 LIPQFPH-LDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTI   51 (131)
Q Consensus         3 ~~~~~~~-~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~   51 (131)
                      +|.+.++ .+.||++.|.+.  .+|++|+++|++||+|||||+|++++++|+
T Consensus        99 lidi~~~~~e~~s~~~F~~~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~  150 (339)
T 3a8t_A           99 LLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDR  150 (339)
T ss_dssp             SSSCBCGGGCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSS
T ss_pred             eccccCcccCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCC
Confidence            5677888 899999999997  889999999999999999999999999996

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.94  E-value=0.00077  Score=51.55  Aligned_cols=38  Identities=13%  Similarity=0.165  Sum_probs=34.3

Q ss_pred             ccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhc
Q psy17229         12 TATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWT   50 (131)
Q Consensus        12 ~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g   50 (131)
                      .|++..|.+.  ..+ +++++|+.||++||++.|+++++.+
T Consensus        70 ~~~~~~f~~~~~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~  109 (253)
T 2ze6_A           70 ILDAESAHRRLIFEV-DWRKSEEGLILEGGSISLLNCMAKS  109 (253)
T ss_dssp             SCCHHHHHHHHHHHH-HTTTTSSEEEEEECCHHHHHHHHHC
T ss_pred             cccHHHHHHHHHHHH-HHHhCCCCeEEeccHHHHHHHHHhc
Confidence            6899999885  677 8889999999999999999999876

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00