Psyllid ID: psy17239

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MINSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccccccHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHc
Coil and Loop (DISEMBL)
minstshvKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQAlqgdasdlksssafsdLEVCQLKQEIE
Flexible Loop (DISEMBL)
minstshvKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQgdasdlksssafsdLEVCQLKQEIE
Low Complexity Region (SEG)
MINSTSHVKDYilgtlilialtiCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE
Disordered region (IsUnstruct)
*******VKDYILGTLILIALTICWYVYR**************************************************************************************
Disordered Region (DISOPRED)
*****SHVKDYILGTLILIALTICWYVYRQKE*************EGLQRAEL*******************************************************QL*****
Disordered Region (DISEMBL)
MINSTSHVKDYILGTLILIALTICWYVYRQK********RMMKDMEGLQRAELDLANLQKEL************EKIKLERRLQE************SSSAFSDLEVCQLKQEIE
Disordered Region (DISPRO)
***STSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQG***D****SAFSDLEVCQLKQEIE
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MINSTSHVKDYILGTLILIALTICWYVYRQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQGDASDLKSSSAFSDLEVCQLKQEIE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
P83094	570	Stromal interaction molec	yes	N/A	0.852	0.171	0.598	7e-27
Q9P246	746	Stromal interaction molec	yes	N/A	0.678	0.104	0.448	1e-14
Q13586	685	Stromal interaction molec	no	N/A	0.739	0.124	0.388	1e-14
Q58CP9	683	Stromal interaction molec	no	N/A	0.739	0.124	0.388	2e-14
P84903	685	Stromal interaction molec	yes	N/A	0.739	0.124	0.388	2e-14
P70302	685	Stromal interaction molec	yes	N/A	0.739	0.124	0.388	2e-14
P83093	746	Stromal interaction molec	no	N/A	0.678	0.104	0.435	8e-14

>sp|P83094|STIM_DROME Stromal interaction molecule homolog OS=Drosophila melanogaster GN=Stim PE=1 SV=1

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 79/107 (73%), Gaps = 9/107 (8%)

Query: 9   KDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE 68
           KDYIL TL+L A+  CWY Y+Q +++++HLRRM +DMEGLQRAE  L  +QKELERAR E
Sbjct: 292 KDYILVTLLLSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQRAEQSLQEMQKELERARME 351

Query: 69  QENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE 115
           QEN A+EK+ LERRL+E   L         SS+ SDLEV QLK+EIE
Sbjct: 352 QENVATEKLDLERRLKEAPTL---------SSSNSDLEVQQLKKEIE 389

Plays a role in mediating Ca(2+) influx following depletion of intracellular Ca(2+) stores.
Drosophila melanogaster (taxid: 7227)

>sp|Q9P246|STIM2_HUMAN Stromal interaction molecule 2 OS=Homo sapiens GN=STIM2 PE=1 SV=2

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 55/78 (70%)

Query: 8   VKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQ 67
           +KD+IL   I+I +  CW+ Y Q ++S++H+ +MMKD+E LQ AE  L +LQ+ LE+A++
Sbjct: 215 MKDFILTVSIVIGVGGCWFAYTQNKTSKEHVAKMMKDLESLQTAEQSLMDLQERLEKAQE 274

Query: 68  EQENAASEKIKLERRLQE 85
           E  N A EK  LER++ +
Sbjct: 275 ENRNVAVEKQNLERKMMD 292

Plays a role in mediating store-operated Ca(2+) entry (SOCE), a Ca(2+) influx following depletion of intracellular Ca(2+) stores. Functions as a highly sensitive Ca(2+) sensor in the endoplasmic reticulum which activates both store-operated and store-independent Ca(2+)-influx. Regulates basal cytosolic and endoplasmic reticulum Ca(2+) concentrations. Upon mild variations of the endoplasmic reticulum Ca(2+) concentration, translocates from the endoplasmic reticulum to the plasma membrane where it probably activates the Ca(2+) release-activated Ca(2+) (CRAC) channels ORAI1, ORAI2 and ORAI3. May inhibit STIM1-mediated Ca(2+) influx.

Homo sapiens (taxid: 9606)

>sp|Q13586|STIM1_HUMAN Stromal interaction molecule 1 OS=Homo sapiens GN=STIM1 PE=1 SV=3

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 58/85 (68%)

Query: 1   MINSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQK 60
           ++   +H+KD++L   I+I +  CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+
Sbjct: 204 LLTRHNHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQE 263

Query: 61  ELERARQEQENAASEKIKLERRLQE 85
            L +A++E      EK+ LE++L++
Sbjct: 264 RLHKAQEEHRTVEVEKVHLEKKLRD 288

Plays a role in mediating store-operated Ca(2+) entry (SOCE), a Ca(2+) influx following depletion of intracellular Ca(2+) stores. Acts as Ca(2+) sensor in the endoplasmic reticulum via its EF-hand domain. Upon Ca(2+) depletion, translocates from the endoplasmic reticulum to the plasma membrane where it activates the Ca(2+) release-activated Ca(2+) (CRAC) channel subunit, TMEM142A/ORAI1.

Homo sapiens (taxid: 9606)

>sp|Q58CP9|STIM1_BOVIN Stromal interaction molecule 1 OS=Bos taurus GN=STIM1 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 58/85 (68%)

Query: 1   MINSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQK 60
           ++   +H+KD++L   I+I +  CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+
Sbjct: 202 LLTRHNHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQE 261

Query: 61  ELERARQEQENAASEKIKLERRLQE 85
            L +A++E      EK+ LE++L++
Sbjct: 262 RLHKAQEEHRTVEVEKVHLEKKLRD 286

Plays a role in mediating store-operated Ca(2+) entry (SOCE), a Ca(2+) influx following depletion of intracellular Ca(2+) stores. Acts as Ca(2+) sensor in the endoplasmic reticulum via its EF-hand domain. Upon Ca(2+) depletion, translocates from the endoplasmic reticulum to the plasma membrane where it activates the Ca(2+) release-activated Ca(2+) (CRAC) channel subunit, TMEM142A/ORAI1.

Bos taurus (taxid: 9913)

>sp|P84903|STIM1_RAT Stromal interaction molecule 1 OS=Rattus norvegicus GN=Stim1 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 58/85 (68%)

Query: 1   MINSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQK 60
           ++   +H+KD++L   I+I +  CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+
Sbjct: 204 LLTRHNHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQE 263

Query: 61  ELERARQEQENAASEKIKLERRLQE 85
            L +A++E      EK+ LE++L++
Sbjct: 264 RLHKAQEEHRTVEVEKVHLEKKLRD 288

Plays a role in mediating store-operated Ca(2+) entry (SOCE), a Ca(2+) influx following depletion of intracellular Ca(2+) stores. Acts as Ca(2+) sensor in the endoplasmic reticulum via its EF-hand domain. Upon Ca(2+) depletion, translocates from the endoplasmic reticulum to the plasma membrane where it activates the Ca(2+) release-activated Ca(2+) (CRAC) channel subunit, TMEM142A/ORAI1.

Rattus norvegicus (taxid: 10116)

>sp|P70302|STIM1_MOUSE Stromal interaction molecule 1 OS=Mus musculus GN=Stim1 PE=1 SV=2

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 58/85 (68%)

Query: 1   MINSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQK 60
           ++   +H+KD++L   I+I +  CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+
Sbjct: 204 LLTRHNHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQE 263

Query: 61  ELERARQEQENAASEKIKLERRLQE 85
            L +A++E      EK+ LE++L++
Sbjct: 264 RLHKAQEEHRTVEVEKVHLEKKLRD 288

Plays a role in mediating store-operated Ca(2+) entry (SOCE), a Ca(2+) influx following depletion of intracellular Ca(2+) stores. Acts as Ca(2+) sensor in the endoplasmic reticulum via its EF-hand domain. Upon Ca(2+) depletion, translocates from the endoplasmic reticulum to the plasma membrane where it activates the Ca(2+) release-activated Ca(2+) (CRAC) channel subunit, TMEM142A/ORAI1.

Mus musculus (taxid: 10090)

>sp|P83093|STIM2_MOUSE Stromal interaction molecule 2 OS=Mus musculus GN=Stim2 PE=1 SV=2

 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 54/78 (69%)

Query: 8   VKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQ 67
           +KD+IL   I+I +  CW+ Y Q ++S++H+ +MMKD+E LQ AE  L +LQ+ LE+A++
Sbjct: 215 MKDFILTISIVIGVGGCWFAYTQNKTSKEHVAKMMKDLESLQTAEQSLMDLQERLEKAQE 274

Query: 68  EQENAASEKIKLERRLQE 85
           E    A EK  LER++ +
Sbjct: 275 ENRTVAVEKQNLERKMMD 292

Plays a role in mediating store-operated Ca(2+) entry (SOCE), a Ca(2+) influx following depletion of intracellular Ca(2+) stores. Functions as a highly sensitive Ca(2+) sensor in the endoplasmic reticulum which activates both store-operated and store-independent Ca(2+)-influx. Regulates basal cytosolic and endoplasmic reticulum Ca(2+) concentrations. Upon mild variations of the endoplasmic reticulum Ca(2+) concentration, translocates from the endoplasmic reticulum to the plasma membrane where it probably activates the Ca(2+) release-activated Ca(2+) (CRAC) channels ORAI1, ORAI2 and ORAI3. May inhibit STIM1-mediated Ca(2+) influx.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
257286299	561	MIP06449p [Drosophila melanogaster]	0.852	0.174	0.598	3e-25
195479064	569	GE16005 [Drosophila yakuba] gi|194188275	0.852	0.172	0.598	3e-25
24642358	570	stromal interaction molecule, isoform A	0.852	0.171	0.598	3e-25
320542104	561	stromal interaction molecule, isoform D	0.852	0.174	0.598	3e-25
195355489	577	GM22508 [Drosophila sechellia] gi|194129	0.852	0.169	0.598	3e-25
356461066	445	SD21962p1 [Drosophila melanogaster]	0.895	0.231	0.571	4e-25
386764519	477	stromal interaction molecule, isoform E	0.852	0.205	0.598	5e-25
194894082	569	GG19358 [Drosophila erecta] gi|190649653	0.852	0.172	0.588	8e-25
383857263	682	PREDICTED: stromal interaction molecule	0.895	0.151	0.571	2e-24
307203101	676	Stromal interaction molecule-like protei	0.869	0.147	0.574	4e-24

>gi|257286299|gb|ACV53096.1| MIP06449p [Drosophila melanogaster]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 79/107 (73%), Gaps = 9/107 (8%)

Query: 9   KDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE 68
           KDYIL TL+L A+  CWY Y+Q +++++HLRRM +DMEGLQRAE  L  +QKELERAR E
Sbjct: 292 KDYILVTLLLSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQRAEQSLQEMQKELERARME 351

Query: 69  QENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE 115
           QEN A+EK+ LERRL+E   L         SS+ SDLEV QLK+EIE
Sbjct: 352 QENVATEKLDLERRLKEAPTL---------SSSNSDLEVQQLKKEIE 389

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195479064|ref|XP_002100751.1| GE16005 [Drosophila yakuba] gi|194188275|gb|EDX01859.1| GE16005 [Drosophila yakuba]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 79/107 (73%), Gaps = 9/107 (8%)

Query: 9   KDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE 68
           KDYIL TL+L A+  CWY Y+Q +++++HLRRM +DMEGLQRAE  L  +QKELERAR E
Sbjct: 291 KDYILVTLLLSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQRAEQSLQEMQKELERARME 350

Query: 69  QENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE 115
           QEN A+EK+ LERRL+E   L         SS+ SDLEV QLK+EIE
Sbjct: 351 QENVATEKLDLERRLKEAPTL---------SSSNSDLEVQQLKKEIE 388

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24642358|ref|NP_523357.2| stromal interaction molecule, isoform A [Drosophila melanogaster] gi|17368342|sp|P83094.1|STIM_DROME RecName: Full=Stromal interaction molecule homolog; Flags: Precursor gi|15042568|gb|AAK82338.1|AF328906_1 stromal interaction molecule-like protein STIM [Drosophila melanogaster] gi|17862708|gb|AAL39831.1| LD45776p [Drosophila melanogaster] gi|22832319|gb|AAF48542.2| stromal interaction molecule, isoform A [Drosophila melanogaster] gi|220946412|gb|ACL85749.1| Stim-PA [synthetic construct] gi|220956050|gb|ACL90568.1| Stim-PA [synthetic construct]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 79/107 (73%), Gaps = 9/107 (8%)

Query: 9   KDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE 68
           KDYIL TL+L A+  CWY Y+Q +++++HLRRM +DMEGLQRAE  L  +QKELERAR E
Sbjct: 292 KDYILVTLLLSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQRAEQSLQEMQKELERARME 351

Query: 69  QENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE 115
           QEN A+EK+ LERRL+E   L         SS+ SDLEV QLK+EIE
Sbjct: 352 QENVATEKLDLERRLKEAPTL---------SSSNSDLEVQQLKKEIE 389

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|320542104|ref|NP_996470.2| stromal interaction molecule, isoform D [Drosophila melanogaster] gi|318069387|gb|AAS65371.2| stromal interaction molecule, isoform D [Drosophila melanogaster] gi|372810434|gb|AEX98009.1| FI18406p1 [Drosophila melanogaster]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 79/107 (73%), Gaps = 9/107 (8%)

Query: 9   KDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE 68
           KDYIL TL+L A+  CWY Y+Q +++++HLRRM +DMEGLQRAE  L  +QKELERAR E
Sbjct: 292 KDYILVTLLLSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQRAEQSLQEMQKELERARME 351

Query: 69  QENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE 115
           QEN A+EK+ LERRL+E   L         SS+ SDLEV QLK+EIE
Sbjct: 352 QENVATEKLDLERRLKEAPTL---------SSSNSDLEVQQLKKEIE 389

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195355489|ref|XP_002044224.1| GM22508 [Drosophila sechellia] gi|194129513|gb|EDW51556.1| GM22508 [Drosophila sechellia]

 Score =  118 bits (296), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 79/107 (73%), Gaps = 9/107 (8%)

Query: 9   KDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE 68
           KDYIL TL+L A+  CWY Y+Q +++++HLRRM +DMEGLQRAE  L  +QKELERAR E
Sbjct: 292 KDYILVTLLLSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQRAEQSLQEMQKELERARME 351

Query: 69  QENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE 115
           QEN A+EK+ LERRL+E   L         SS+ SDLEV QLK+EIE
Sbjct: 352 QENVATEKLDLERRLKEAPTL---------SSSNSDLEVQQLKKEIE 389

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|356461066|gb|AET07639.1| SD21962p1 [Drosophila melanogaster]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 64/112 (57%), Positives = 81/112 (72%), Gaps = 9/112 (8%)

Query: 4   STSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELE 63
           + +  KDYIL TL+L A+  CWY Y+Q +++++HLRRM +DMEGLQRAE  L  +QKELE
Sbjct: 171 TGTRWKDYILVTLLLSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQRAEQSLQEMQKELE 230

Query: 64  RARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE 115
           RAR EQEN A+EK+ LERRL+E   L         SS+ SDLEV QLK+EIE
Sbjct: 231 RARMEQENVATEKLDLERRLKEAPTL---------SSSNSDLEVQQLKKEIE 273

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386764519|ref|NP_996471.2| stromal interaction molecule, isoform E [Drosophila melanogaster] gi|314122275|gb|ADR83712.1| HL01465p [Drosophila melanogaster] gi|383293430|gb|AAS65372.2| stromal interaction molecule, isoform E [Drosophila melanogaster]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 79/107 (73%), Gaps = 9/107 (8%)

Query: 9   KDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE 68
           KDYIL TL+L A+  CWY Y+Q +++++HLRRM +DMEGLQRAE  L  +QKELERAR E
Sbjct: 199 KDYILVTLLLSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQRAEQSLQEMQKELERARME 258

Query: 69  QENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE 115
           QEN A+EK+ LERRL+E   L         SS+ SDLEV QLK+EIE
Sbjct: 259 QENVATEKLDLERRLKEAPTL---------SSSNSDLEVQQLKKEIE 296

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194894082|ref|XP_001978004.1| GG19358 [Drosophila erecta] gi|190649653|gb|EDV46931.1| GG19358 [Drosophila erecta]

 Score =  117 bits (293), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 79/107 (73%), Gaps = 9/107 (8%)

Query: 9   KDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE 68
           KDYIL TL+L A+  CWY Y+Q +++++HLRRM +DMEGLQ+AE  L  +QKELERAR E
Sbjct: 291 KDYILVTLLLSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQKAEQSLQEMQKELERARME 350

Query: 69  QENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE 115
           QEN A+EK+ LERRL+E   L         SS+ SDLEV QLK+EIE
Sbjct: 351 QENVATEKLDLERRLKEAPTL---------SSSNSDLEVQQLKKEIE 388

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857263|ref|XP_003704124.1| PREDICTED: stromal interaction molecule homolog [Megachile rotundata]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/112 (57%), Positives = 80/112 (71%), Gaps = 9/112 (8%)

Query: 5   TSH-VKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELE 63
           T H +KD IL TL+  AL  CWYVY+QK++SQ+HL RMMKDME L +AEL L +LQKELE
Sbjct: 234 TGHSIKDLILITLLFGALIGCWYVYQQKKNSQKHLHRMMKDMESLHKAELALEDLQKELE 293

Query: 64  RARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE 115
           RAR EQE+A +EK  LE+RLQ+          +   +++SDLEV QLK EIE
Sbjct: 294 RARMEQESATTEKQNLEKRLQDES--------MGLHASYSDLEVSQLKAEIE 337

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203101|gb|EFN82281.1| Stromal interaction molecule-like protein [Harpegnathos saltator]

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/108 (57%), Positives = 78/108 (72%), Gaps = 8/108 (7%)

Query: 8   VKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQ 67
           +KD +L TL+  AL  CWY Y+QK++SQ+HL RMMKDME L +AEL L +LQKELERAR 
Sbjct: 238 IKDLVLVTLLFGALIGCWYAYQQKKNSQKHLLRMMKDMESLHKAELALEDLQKELERARM 297

Query: 68  EQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE 115
           EQE+AA+EK  LE+RLQ+          L   +++SDLEV QLK EIE
Sbjct: 298 EQESAATEKQNLEKRLQDES--------LGLHTSYSDLEVSQLKAEIE 337

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
FB|FBgn0045073	570	Stim "Stromal interaction mole	0.852	0.171	0.551	3.9e-22
UNIPROTKB|E9PNJ4	512	STIM1 "Stromal interaction mol	0.843	0.189	0.346	1.1e-12
UNIPROTKB|G3X721	683	STIM1 "Stromal interaction mol	0.843	0.142	0.346	1.7e-12
UNIPROTKB|Q58CP9	683	STIM1 "Stromal interaction mol	0.843	0.142	0.346	1.7e-12
UNIPROTKB|F1PIS1	685	STIM1 "Uncharacterized protein	0.843	0.141	0.346	1.7e-12
UNIPROTKB|Q13586	685	STIM1 "Stromal interaction mol	0.843	0.141	0.346	1.7e-12
UNIPROTKB|F1SUZ4	685	STIM1 "Uncharacterized protein	0.843	0.141	0.346	1.7e-12
MGI|MGI:107476	685	Stim1 "stromal interaction mol	0.843	0.141	0.346	1.7e-12
RGD|1306831	685	Stim1 "stromal interaction mol	0.843	0.141	0.346	1.7e-12
UNIPROTKB|Q9P246	746	STIM2 "Stromal interaction mol	0.939	0.144	0.330	4.1e-12

FB|FBgn0045073 Stim "Stromal interaction molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 265 (98.3 bits), Expect = 3.9e-22, P = 3.9e-22
 Identities = 59/107 (55%), Positives = 72/107 (67%)

Query:     9 KDYXXXXXXXXXXXXCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE 68
             KDY            CWY Y+Q +++++HLRRM +DMEGLQRAE  L  +QKELERAR E
Sbjct:   292 KDYILVTLLLSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQRAEQSLQEMQKELERARME 351

Query:    69 QENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE 115
             QEN A+EK+ LERRL+E       A  L SS+  SDLEV QLK+EIE
Sbjct:   352 QENVATEKLDLERRLKE-------APTLSSSN--SDLEVQQLKKEIE 389

GO:0007155 "cell adhesion" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0048763 "calcium-induced calcium release activity" evidence=IMP

GO:0032237 "activation of store-operated calcium channel activity" evidence=IMP

GO:0015279 "store-operated calcium channel activity" evidence=IMP

GO:0051533 "positive regulation of NFAT protein import into nucleus" evidence=IMP

GO:0002115 "store-operated calcium entry" evidence=IMP

GO:0022416 "chaeta development" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

UNIPROTKB|E9PNJ4 STIM1 "Stromal interaction molecule 1" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 34/98 (34%), Positives = 58/98 (59%)

Query:     1 MINSTSHVKDYXXXXXXXXXXXXCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQK 60
             ++   +H+KD+            CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+
Sbjct:    31 LLTRHNHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQE 90

Query:    61 ELERARQEQENAASEKIKLERRLQEHQAL-QGDASDLK 97
              L +A++E      EK+ LE++L++   L + +A  LK
Sbjct:    91 RLHKAQEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLK 128

GO:0006812 "cation transport" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|G3X721 STIM1 "Stromal interaction molecule 1" [Bos taurus (taxid:9913)]

 Score = 177 (67.4 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 34/98 (34%), Positives = 58/98 (59%)

Query:     1 MINSTSHVKDYXXXXXXXXXXXXCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQK 60
             ++   +H+KD+            CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+
Sbjct:   202 LLTRHNHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQE 261

Query:    61 ELERARQEQENAASEKIKLERRLQEHQAL-QGDASDLK 97
              L +A++E      EK+ LE++L++   L + +A  LK
Sbjct:   262 RLHKAQEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLK 299

GO:0051010 "microtubule plus-end binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0032541 "cortical endoplasmic reticulum" evidence=IEA

GO:0032237 "activation of store-operated calcium channel activity" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005513 "detection of calcium ion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|Q58CP9 STIM1 "Stromal interaction molecule 1" [Bos taurus (taxid:9913)]

 Score = 177 (67.4 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 34/98 (34%), Positives = 58/98 (59%)

Query:     1 MINSTSHVKDYXXXXXXXXXXXXCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQK 60
             ++   +H+KD+            CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+
Sbjct:   202 LLTRHNHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQE 261

Query:    61 ELERARQEQENAASEKIKLERRLQEHQAL-QGDASDLK 97
              L +A++E      EK+ LE++L++   L + +A  LK
Sbjct:   262 RLHKAQEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLK 299

GO:0051924 "regulation of calcium ion transport" evidence=ISS

GO:0032237 "activation of store-operated calcium channel activity" evidence=ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0005513 "detection of calcium ion" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0051010 "microtubule plus-end binding" evidence=ISS

GO:0006816 "calcium ion transport" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|F1PIS1 STIM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 177 (67.4 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 34/98 (34%), Positives = 58/98 (59%)

Query:     1 MINSTSHVKDYXXXXXXXXXXXXCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQK 60
             ++   +H+KD+            CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+
Sbjct:   204 LLTRHNHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQE 263

Query:    61 ELERARQEQENAASEKIKLERRLQEHQAL-QGDASDLK 97
              L +A++E      EK+ LE++L++   L + +A  LK
Sbjct:   264 RLHKAQEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLK 301

GO:0051010 "microtubule plus-end binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0032541 "cortical endoplasmic reticulum" evidence=IEA

GO:0032237 "activation of store-operated calcium channel activity" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005513 "detection of calcium ion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|Q13586 STIM1 "Stromal interaction molecule 1" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 34/98 (34%), Positives = 58/98 (59%)

Query:     1 MINSTSHVKDYXXXXXXXXXXXXCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQK 60
             ++   +H+KD+            CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+
Sbjct:   204 LLTRHNHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQE 263

Query:    61 ELERARQEQENAASEKIKLERRLQEHQAL-QGDASDLK 97
              L +A++E      EK+ LE++L++   L + +A  LK
Sbjct:   264 RLHKAQEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLK 301

GO:0005874 "microtubule" evidence=IEA

GO:0006816 "calcium ion transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0051924 "regulation of calcium ion transport" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005513 "detection of calcium ion" evidence=IDA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0032237 "activation of store-operated calcium channel activity" evidence=IDA

GO:0051010 "microtubule plus-end binding" evidence=IDA

GO:0032541 "cortical endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|F1SUZ4 STIM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 177 (67.4 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 34/98 (34%), Positives = 58/98 (59%)

Query:     1 MINSTSHVKDYXXXXXXXXXXXXCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQK 60
             ++   +H+KD+            CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+
Sbjct:   204 LLTRHNHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQE 263

Query:    61 ELERARQEQENAASEKIKLERRLQEHQAL-QGDASDLK 97
              L +A++E      EK+ LE++L++   L + +A  LK
Sbjct:   264 RLHKAQEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLK 301

GO:0051010 "microtubule plus-end binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0032541 "cortical endoplasmic reticulum" evidence=IEA

GO:0032237 "activation of store-operated calcium channel activity" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005513 "detection of calcium ion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

MGI|MGI:107476 Stim1 "stromal interaction molecule 1" [Mus musculus (taxid:10090)]

 Score = 177 (67.4 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 34/98 (34%), Positives = 58/98 (59%)

Query:     1 MINSTSHVKDYXXXXXXXXXXXXCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQK 60
             ++   +H+KD+            CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+
Sbjct:   204 LLTRHNHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQE 263

Query:    61 ELERARQEQENAASEKIKLERRLQEHQAL-QGDASDLK 97
              L +A++E      EK+ LE++L++   L + +A  LK
Sbjct:   264 RLHKAQEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLK 301

GO:0002115 "store-operated calcium entry" evidence=ISO

GO:0005246 "calcium channel regulator activity" evidence=ISO

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005513 "detection of calcium ion" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006812 "cation transport" evidence=IMP

GO:0006816 "calcium ion transport" evidence=IEA

GO:0015279 "store-operated calcium channel activity" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISO

GO:0030426 "growth cone" evidence=ISO

GO:0032237 "activation of store-operated calcium channel activity" evidence=ISO

GO:0032541 "cortical endoplasmic reticulum" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043234 "protein complex" evidence=IPI

GO:0046872 "metal ion binding" evidence=IEA

GO:0051010 "microtubule plus-end binding" evidence=ISO

GO:0051924 "regulation of calcium ion transport" evidence=ISO

GO:2001256 "regulation of store-operated calcium entry" evidence=ISO

RGD|1306831 Stim1 "stromal interaction molecule 1" [Rattus norvegicus (taxid:10116)]

 Score = 177 (67.4 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 34/98 (34%), Positives = 58/98 (59%)

Query:     1 MINSTSHVKDYXXXXXXXXXXXXCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQK 60
             ++   +H+KD+            CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+
Sbjct:   204 LLTRHNHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQE 263

Query:    61 ELERARQEQENAASEKIKLERRLQEHQAL-QGDASDLK 97
              L +A++E      EK+ LE++L++   L + +A  LK
Sbjct:   264 RLHKAQEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLK 301

GO:0002115 "store-operated calcium entry" evidence=IMP

GO:0005246 "calcium channel regulator activity" evidence=IMP

GO:0005509 "calcium ion binding" evidence=ISO;ISS

GO:0005513 "detection of calcium ion" evidence=ISO;ISS

GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA

GO:0005874 "microtubule" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISO;ISS

GO:0006812 "cation transport" evidence=ISO

GO:0015279 "store-operated calcium channel activity" evidence=IMP

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISO;ISS

GO:0030426 "growth cone" evidence=IDA

GO:0032237 "activation of store-operated calcium channel activity" evidence=ISO;ISS;IMP

GO:0032541 "cortical endoplasmic reticulum" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0043234 "protein complex" evidence=ISO

GO:0051010 "microtubule plus-end binding" evidence=ISO;ISS

GO:0051924 "regulation of calcium ion transport" evidence=ISO;ISS

GO:2001256 "regulation of store-operated calcium entry" evidence=IMP

UNIPROTKB|Q9P246 STIM2 "Stromal interaction molecule 2" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 4.1e-12, P = 4.1e-12
 Identities = 37/112 (33%), Positives = 64/112 (57%)

Query:     8 VKDYXXXXXXXXXXXXCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQ 67
             +KD+            CW+ Y Q ++S++H+ +MMKD+E LQ AE  L +LQ+ LE+A++
Sbjct:   215 MKDFILTVSIVIGVGGCWFAYTQNKTSKEHVAKMMKDLESLQTAEQSLMDLQERLEKAQE 274

Query:    68 EQENAASEKIKLERRLQEH-QALQGDASDLKSSSAFSDLEVCQ---LKQEIE 115
             E  N A EK  LER++ +     + +A  L+     ++ E+ +    +QE+E
Sbjct:   275 ENRNVAVEKQNLERKMMDEINYAKEEACRLRELREGAECELSRRQYAEQELE 326

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006874 "cellular calcium ion homeostasis" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005246 "calcium channel regulator activity" evidence=IMP

GO:0051928 "positive regulation of calcium ion transport" evidence=IMP;IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0032237 "activation of store-operated calcium channel activity" evidence=IDA;IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0015279 "store-operated calcium channel activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P83094	STIM_DROME	No assigned EC number	0.5981	0.8521	0.1719	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
KOG4403|consensus	575		100.0
PRK10920	390	putative uroporphyrinogen III C-methyltransferase;	96.9
PF10828	110	DUF2570: Protein of unknown function (DUF2570); In	96.55
PRK06975	656	bifunctional uroporphyrinogen-III synthetase/uropo	95.68
PF14584	151	DUF4446: Protein of unknown function (DUF4446)	95.31
PF04375	372	HemX: HemX; InterPro: IPR007470 The majority of pr	94.73
PF06210	108	DUF1003: Protein of unknown function (DUF1003); In	93.98
TIGR03495	135	phage_LysB phage lysis regulatory protein, LysB fa	93.93
PRK10780	165	periplasmic chaperone; Provisional	93.46
PF14235	157	DUF4337: Domain of unknown function (DUF4337)	93.37
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	93.22
PRK11637	428	AmiB activator; Provisional	93.03
PF06295	128	DUF1043: Protein of unknown function (DUF1043); In	92.88
PF06305	68	DUF1049: Protein of unknown function (DUF1049); In	92.51
PF10883	87	DUF2681: Protein of unknown function (DUF2681); In	92.4
COG1422	201	Predicted membrane protein [Function unknown]	92.23
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	91.7
PF03672	64	UPF0154: Uncharacterised protein family (UPF0154);	91.5
TIGR02209	85	ftsL_broad cell division protein FtsL. This model	91.18
PRK09039	343	hypothetical protein; Validated	90.93
PRK11677	134	hypothetical protein; Provisional	90.7
PRK01844	72	hypothetical protein; Provisional	90.68
PHA01750	75	hypothetical protein	90.47
PRK00523	72	hypothetical protein; Provisional	90.32
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	89.52
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	89.49
COG3763	71	Uncharacterized protein conserved in bacteria [Fun	89.03
PF06120	301	Phage_HK97_TLTM: Tail length tape measure protein;	88.9
PF14991	118	MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P	88.48
TIGR01386	457	cztS_silS_copS heavy metal sensor kinase. Members	88.01
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	87.79
PRK10361	475	DNA recombination protein RmuC; Provisional	87.4
PRK11637	428	AmiB activator; Provisional	87.24
PF04011	186	LemA: LemA family; InterPro: IPR007156 The members	86.81
PRK10803	263	tol-pal system protein YbgF; Provisional	86.37
PRK12705	508	hypothetical protein; Provisional	86.02
COG4741	175	Predicted secreted endonuclease distantly related	85.26
PF12729	181	4HB_MCP_1: Four helix bundle sensory module for si	84.99
PF06298	36	PsbY: Photosystem II protein Y (PsbY); InterPro: I	84.82
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	84.71
PF08139	25	LPAM_1: Prokaryotic membrane lipoprotein lipid att	84.33
TIGR02209	85	ftsL_broad cell division protein FtsL. This model	84.21
PF13801	125	Metal_resist: Heavy-metal resistance; PDB: 3EPV_C	83.93
PRK06531	113	yajC preprotein translocase subunit YajC; Validate	83.79
PF13268	72	DUF4059: Protein of unknown function (DUF4059)	83.25
PHA02047	101	phage lambda Rz1-like protein	83.25
PF07047	134	OPA3: Optic atrophy 3 protein (OPA3); InterPro: IP	82.96
PRK09835	482	sensor kinase CusS; Provisional	82.91
TIGR02230	100	ATPase_gene1 F0F1-ATPase subunit, putative. This m	82.6
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	81.34
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	80.94
PF11770	158	GAPT: GRB2-binding adapter (GAPT); InterPro: IPR02	80.33
CHL00196	36	psbY photosystem II protein Y; Provisional	80.2

>KOG4403|consensus

Probab=100.00  E-value=1.1e-39  Score=282.16  Aligned_cols=104  Identities=47%  Similarity=0.759  Sum_probs=97.3

Q ss_pred             CCCCchHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239          3 NSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERR   82 (115)
Q Consensus         3 ~~~n~~KD~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~k   82 (115)
                      ++|||+|||+|++|||||||||||||+|||+||+|+++||+|||+||+||++|+|||++|++||+||+||++||++||++
T Consensus       209 ~~~n~~KD~iLv~lili~v~gcw~ay~Qnk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerk  288 (575)
T KOG4403|consen  209 TNHNWTKDFILVVLILIGVGGCWFAYRQNKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERK  288 (575)
T ss_pred             CCcchhhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcccccccccccccHHHHHHHHHhhC
Q psy17239         83 LQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE  115 (115)
Q Consensus        83 l~~~~~~~~~~~~l~~~~~~sdlEv~~LkqEie  115 (115)
                      +++       ||+|+.  ..+++|..+.++|||
T Consensus       289 l~e-------a~rl~e--lreg~e~e~~rkelE  312 (575)
T KOG4403|consen  289 LDE-------APRLSE--LREGVENETSRKELE  312 (575)
T ss_pred             Hhh-------hhhhhh--hhcchhHHHHHHHHH
Confidence            998       999998  446777777776664

>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional

Probab=96.90  E-value=0.021  Score=49.11  Aligned_cols=77  Identities=17%  Similarity=0.176  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhhhHH--HHHHHHHHhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239          9 KDYILGTLILIALTICWYVYRQKESSQ--QHLRRMMKDMEGL--------QRAELDLANLQKELERARQEQENAASEKIK   78 (115)
Q Consensus         9 KD~~Lv~slvia~~GcWfAy~Qnk~Sk--~hl~kmmkDle~L--------q~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~   78 (115)
                      +=.+++++|++|+||+||+|.|-...+  .....+-..++.+        +..+..+..+.+.+..++..+......-+.
T Consensus        38 ~l~~~aili~la~g~g~y~~~~qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~  117 (390)
T PRK10920         38 VLSAVAIAIALAAGAGLYYHGKQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDE  117 (390)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777889999988886544422  2233333334333        223334444444455555555555555556


Q ss_pred             HHHHHHH
Q psy17239         79 LERRLQE   85 (115)
Q Consensus        79 LE~kl~~   85 (115)
                      |+.++.+
T Consensus       118 Lq~~~~~  124 (390)
T PRK10920        118 LQQKVAT  124 (390)
T ss_pred             HHHHHHH
Confidence            6666654

>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT

Probab=96.55  E-value=0.15  Score=36.22  Aligned_cols=67  Identities=21%  Similarity=0.304  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239         11 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQ   84 (115)
Q Consensus        11 ~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~   84 (115)
                      ++|++++|+..|.+|+.+.+       |.++-.+.+....+=....+.-++|..+-.+.+.+..+-+.-|++++
T Consensus         7 ~~l~~lvl~L~~~l~~qs~~-------i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r   73 (110)
T PF10828_consen    7 IALAVLVLGLGGWLWYQSQR-------IDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLR   73 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444443322       44444455544444444444444554444455555555444444444

3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.

>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

Probab=95.68  E-value=0.2  Score=45.04  Aligned_cols=77  Identities=14%  Similarity=0.218  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhh-hhhHHHHHHHHHHhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239          9 KDYILGTLILIALTICWYVYRQ-KESSQQHLRRMMKDMEGLQ--------RAELDLANLQKELERARQEQENAASEKIKL   79 (115)
Q Consensus         9 KD~~Lv~slvia~~GcWfAy~Q-nk~Sk~hl~kmmkDle~Lq--------~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~L   79 (115)
                      .=++++++|++|+||.||.++| ...-++.+.+...+.+.+.        .+.....+++.++.....+.......-+.|
T Consensus       325 ~~~~~~l~~~~~~g~~~~~~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L  404 (656)
T PRK06975        325 ALWFVVVVLACAAAVGGYALNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQAL  404 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3356777788888877764444 5555566666555543322        245555666667666666666666666666


Q ss_pred             HHHHHH
Q psy17239         80 ERRLQE   85 (115)
Q Consensus        80 E~kl~~   85 (115)
                      ++.+.+
T Consensus       405 ~~~~~~  410 (656)
T PRK06975        405 EQQYQD  410 (656)
T ss_pred             HHHHHH
Confidence            666655

>PF14584 DUF4446: Protein of unknown function (DUF4446)

Probab=95.31  E-value=0.24  Score=37.60  Aligned_cols=73  Identities=19%  Similarity=0.257  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239         12 ILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE   85 (115)
Q Consensus        12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~   85 (115)
                      .++++++++++.+...+..-++-+..-..+|+..++- .-|.-|.+...+++..+++.+....+-..++.+++.
T Consensus         6 ~l~~l~iilli~~~~~~~kl~kl~r~Y~~lm~g~~~~-~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   78 (151)
T PF14584_consen    6 GLLVLVIILLILIIILNIKLRKLKRRYDALMRGKDGK-NLEDLLNELFDQIDELKEELEELEKRIEELEEKLRN   78 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556666667777777777788888899999888774 568888999999999999999988888899988875

>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2

Probab=94.73  E-value=0.78  Score=38.50  Aligned_cols=40  Identities=23%  Similarity=0.301  Sum_probs=20.8

Q ss_pred             HHHHHHHHh--HHHHHHhhhhhHHHHHHHHHHhhHHHHHHHH
Q psy17239         14 GTLILIALT--ICWYVYRQKESSQQHLRRMMKDMEGLQRAEL   53 (115)
Q Consensus        14 v~slvia~~--GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~   53 (115)
                      +++|++|+|  |.||...|....+..+..+-..+..+...-.
T Consensus        36 alll~~alg~~~~~~~~~q~~~~~~~~~~L~~ql~~~~~~~~   77 (372)
T PF04375_consen   36 ALLLALALGAGGWYWQQQQLQQLQQQLQALQQQLQQLQQQLE   77 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444  3334444554556666777666666554333

1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].

>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=93.98  E-value=1.1  Score=32.34  Aligned_cols=67  Identities=15%  Similarity=0.115  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239         12 ILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIK   78 (115)
Q Consensus        12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~   78 (115)
                      -|++|++-++-.--.-..|||.++.--.+.-.|.+.-.+||...+.|.++|..-.........+-+.
T Consensus        39 nl~lS~~Aa~~ap~IlmsQNRq~~~dr~ra~~D~~inl~ae~ei~~l~~~l~~l~~~~~~~~~~~~~  105 (108)
T PF06210_consen   39 NLVLSLEAAYQAPLILMSQNRQAARDRLRAELDYQINLKAEQEIERLHRKLDALREKLGELLERDQE  105 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            4566777777777777899999999999999999999999999999999999988888777766544

>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family

Probab=93.93  E-value=2.1  Score=32.37  Aligned_cols=36  Identities=11%  Similarity=0.140  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHH
Q psy17239         12 ILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEG   47 (115)
Q Consensus        12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~   47 (115)
                      ++++++++|++|.||...++++.+.-+...-+.+..
T Consensus         2 ~~i~l~~~a~~~~~~~~~~~~~l~~~~~~a~~~~~~   37 (135)
T TIGR03495         2 LLIVLLGLLVAGLGWQSQRLRNARADLERANRVLKA   37 (135)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356678888888888888888888777776655533

Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.

>PRK10780 periplasmic chaperone; Provisional

Probab=93.46  E-value=1.2  Score=33.18  Aligned_cols=48  Identities=10%  Similarity=0.124  Sum_probs=35.9

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHH
Q psy17239          8 VKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDL   55 (115)
Q Consensus         8 ~KD~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL   55 (115)
                      ||=|++++++.+++.|.+.|+.+.|-.=..+.+.+..+..-+.+...|
T Consensus         1 Mkk~~~~~~l~l~~~~~~~a~a~~KIg~Vd~q~il~~~p~~k~~~~~l   48 (165)
T PRK10780          1 MKKWLLAAGLGLALATSAGAQAADKIAIVNMGSIFQQVPQRTGVSKQL   48 (165)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhcCeEEeeHHHHHHHCHHHHHHHHHH
Confidence            466788777777777888888888888788888888777766655443

>PF14235 DUF4337: Domain of unknown function (DUF4337)

Probab=93.37  E-value=0.56  Score=35.70  Aligned_cols=58  Identities=33%  Similarity=0.440  Sum_probs=51.1

Q ss_pred             HHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239         26 YVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE   85 (115)
Q Consensus        26 fAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~   85 (115)
                      ++|-|-|+-|+|+-++-.|+-.+....  -..+++++++-+.+...-..|+..||++-++
T Consensus        41 Wa~YQAKsiK~~l~e~~~~~l~~~~~~--~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~   98 (157)
T PF14235_consen   41 WAYYQAKSIKQHLAELAADLLELELAA--RAAYQKKIARYKKEKARYKSEAEELEAKAKE   98 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578899999999999999998887644  5678899999999999999999999988776

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=93.22  E-value=1.9  Score=30.52  Aligned_cols=77  Identities=18%  Similarity=0.268  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHhH-HHHHHhhhhhHHHHHHHHHHhhH----HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q psy17239          9 KDYILGTLILIALTI-CWYVYRQKESSQQHLRRMMKDME----GLQRAELDLANL--QKELERARQEQENAASEKIKLER   81 (115)
Q Consensus         9 KD~~Lv~slvia~~G-cWfAy~Qnk~Sk~hl~kmmkDle----~Lq~AE~sL~dL--Q~~Le~A~~e~~~v~~EK~~LE~   81 (115)
                      |+|-.+.+++.+++| .|+.....+..+..+..+..+++    .|+..|..+..|  +..+.+-+-+-..+.++-..++.
T Consensus         7 ~~w~ii~a~~~~~~~~~~~~l~~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~   86 (106)
T PF10805_consen    7 KNWGIIWAVFGIAGGIFWLWLRRTYAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSA   86 (106)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence            566665555554444 34444444455677777755554    456677777777  66666666666666666666666


Q ss_pred             HHHH
Q psy17239         82 RLQE   85 (115)
Q Consensus        82 kl~~   85 (115)
                      +++-
T Consensus        87 ~l~~   90 (106)
T PF10805_consen   87 RLQG   90 (106)
T ss_pred             HHHH
Confidence            6654

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PRK11637 AmiB activator; Provisional

Probab=93.03  E-value=1.9  Score=36.26  Aligned_cols=19  Identities=0%  Similarity=0.245  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHhH-HHHH
Q psy17239          9 KDYILGTLILIALTI-CWYV   27 (115)
Q Consensus         9 KD~~Lv~slvia~~G-cWfA   27 (115)
                      .-++++++++.++.+ +|++
T Consensus        21 ~~~~~~~ll~~~~~~~~~~~   40 (428)
T PRK11637         21 RPILYASVLSAGVLLCAFSA   40 (428)
T ss_pred             hhHHHHHHHHHHHHHhhhcc
Confidence            344455444444433 4544

>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=92.88  E-value=2.7  Score=30.61  Aligned_cols=53  Identities=13%  Similarity=0.150  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239         12 ILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE   68 (115)
Q Consensus        12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e   68 (115)
                      ++|.+||++|+|+|+...=+++ ..+.+++=+.   |..++..|.+-+.++..=...
T Consensus         2 ~~i~lvvG~iiG~~~~r~~~~~-~~~q~~l~~e---L~~~k~el~~yk~~V~~HF~~   54 (128)
T PF06295_consen    2 AIIGLVVGLIIGFLIGRLTSSN-QQKQAKLEQE---LEQAKQELEQYKQEVNDHFAQ   54 (128)
T ss_pred             hHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            4666666666666655444444 3444555444   446677777777777654433

>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=92.51  E-value=0.77  Score=28.96  Aligned_cols=35  Identities=23%  Similarity=0.276  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhh
Q psy17239         11 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDM   45 (115)
Q Consensus        11 ~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDl   45 (115)
                      ++++..+++++.|+.+.+.-.-..+..+++.-|.+
T Consensus        23 ~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l   57 (68)
T PF06305_consen   23 LILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKEL   57 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555565555544444444444444433

>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function

Probab=92.40  E-value=2.5  Score=29.98  Aligned_cols=26  Identities=31%  Similarity=0.294  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239         55 LANLQKELERARQEQENAASEKIKLE   80 (115)
Q Consensus        55 L~dLQ~~Le~A~~e~~~v~~EK~~LE   80 (115)
                      ...||++-+.-+.|..-+.+|-.|-+
T Consensus        32 ~~kL~~en~qlk~Ek~~~~~qvkn~~   57 (87)
T PF10883_consen   32 NAKLQKENEQLKTEKAVAETQVKNAK   57 (87)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445544444444444444444444

>COG1422 Predicted membrane protein [Function unknown]

Probab=92.23  E-value=1.3  Score=35.81  Aligned_cols=59  Identities=19%  Similarity=0.249  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239         11 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIK   78 (115)
Q Consensus        11 ~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~   78 (115)
                      ..|++++..++.|.++-+.|         +..-|-|.+++-.....++|++-++|++++.....+|-+
T Consensus        46 p~lvilV~avi~gl~~~i~~---------~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq  104 (201)
T COG1422          46 PHLVILVAAVITGLYITILQ---------KLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQ  104 (201)
T ss_pred             cHHHHHHHHHHHHHHHHHHH---------HHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            46788888888898888876         457799999999999999999999999988877777644

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=91.70  E-value=0.44  Score=37.09  Aligned_cols=47  Identities=30%  Similarity=0.444  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccHHHHHHHHHhh
Q psy17239         54 DLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEI  114 (115)
Q Consensus        54 sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l~~~~~~sdlEv~~LkqEi  114 (115)
                      +|+|+..+|.+|=|.+---..|-       +|--.+..+..||++       |++.||||+
T Consensus         1 SLeD~EsklN~AIERnalLE~EL-------dEKE~L~~~~QRLkD-------E~RDLKqEl   47 (166)
T PF04880_consen    1 SLEDFESKLNQAIERNALLESEL-------DEKENLREEVQRLKD-------ELRDLKQEL   47 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHCH---------------------
T ss_pred             CHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence            68999999999887665444443       221123335566665       777777775

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised

Probab=91.50  E-value=0.46  Score=32.16  Aligned_cols=19  Identities=21%  Similarity=0.156  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHhHHHHHHhh
Q psy17239         12 ILGTLILIALTICWYVYRQ   30 (115)
Q Consensus        12 ~Lv~slvia~~GcWfAy~Q   30 (115)
                      +.+.+|+++++|.|+|..+
T Consensus         3 iilali~G~~~Gff~ar~~   21 (64)
T PF03672_consen    3 IILALIVGAVIGFFIARKY   21 (64)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4556667777777777554

>TIGR02209 ftsL_broad cell division protein FtsL

Probab=91.18  E-value=2.7  Score=27.46  Aligned_cols=12  Identities=25%  Similarity=0.432  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHHH
Q psy17239         59 QKELERARQEQE   70 (115)
Q Consensus        59 Q~~Le~A~~e~~   70 (115)
                      +++++..+.++.
T Consensus        37 ~~~~~~l~~en~   48 (85)
T TIGR02209        37 QLEIDKLQKEWR   48 (85)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.

>PRK09039 hypothetical protein; Validated

Probab=90.93  E-value=4.3  Score=34.02  Aligned_cols=25  Identities=28%  Similarity=0.310  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239         49 QRAELDLANLQKELERARQEQENAA   73 (115)
Q Consensus        49 q~AE~sL~dLQ~~Le~A~~e~~~v~   73 (115)
                      ..++..+.+++.+++.|+.......
T Consensus        77 ~~l~~~l~~l~~~l~~a~~~r~~Le  101 (343)
T PRK09039         77 QDLQDSVANLRASLSAAEAERSRLQ  101 (343)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555666666666665555544433

>PRK11677 hypothetical protein; Provisional

Probab=90.70  E-value=5.8  Score=29.87  Aligned_cols=52  Identities=12%  Similarity=0.068  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17239         12 ILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQ   67 (115)
Q Consensus        12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~   67 (115)
                      .+|.+||++++|++.+..=+++. .+-+++=+   .|.+++.+|.+-+.++..=..
T Consensus         6 a~i~livG~iiG~~~~R~~~~~~-~~q~~le~---eLe~~k~ele~YkqeV~~HFa   57 (134)
T PRK11677          6 ALIGLVVGIIIGAVAMRFGNRKL-RQQQALQY---ELEKNKAELEEYRQELVSHFA   57 (134)
T ss_pred             HHHHHHHHHHHHHHHHhhccchh-hHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555544444333333 33344443   345566667766666655443

>PRK01844 hypothetical protein; Provisional

Probab=90.68  E-value=0.64  Score=32.23  Aligned_cols=19  Identities=5%  Similarity=-0.164  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHhHHHHHHhh
Q psy17239         12 ILGTLILIALTICWYVYRQ   30 (115)
Q Consensus        12 ~Lv~slvia~~GcWfAy~Q   30 (115)
                      +.+.+|+++++|.|+|-.+
T Consensus        10 ~I~~li~G~~~Gff~ark~   28 (72)
T PRK01844         10 GVVALVAGVALGFFIARKY   28 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3455777788888887554

>PHA01750 hypothetical protein

Probab=90.47  E-value=4.5  Score=28.25  Aligned_cols=71  Identities=15%  Similarity=0.276  Sum_probs=47.0

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239          8 VKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERR   82 (115)
Q Consensus         8 ~KD~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~k   82 (115)
                      +-|++||++++-...-.-||.+|--.   +|++|.||-=. .--.++|.+|-.+++...-.+.+....-.++.++
T Consensus         1 m~~~VLvLtlmSTtaTtlFaIiqlYl---KIKq~lkdAvk-eIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k   71 (75)
T PHA01750          1 MSETVLVLTLMSTTATTLFAIIQLYL---KIKQALKDAVK-EIVNSELDNLKTEIEELKIKQDELSRQVEEIKRK   71 (75)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            35899999999988899999988543   46677666311 1234578888888887776666543333333333

>PRK00523 hypothetical protein; Provisional

Probab=90.32  E-value=0.71  Score=32.02  Aligned_cols=19  Identities=11%  Similarity=-0.006  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHhHHHHHHhh
Q psy17239         12 ILGTLILIALTICWYVYRQ   30 (115)
Q Consensus        12 ~Lv~slvia~~GcWfAy~Q   30 (115)
                      +.+.+|+++++|.|+|-.+
T Consensus        11 ~i~~li~G~~~Gffiark~   29 (72)
T PRK00523         11 GIPLLIVGGIIGYFVSKKM   29 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3445677778888887654

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=89.52  E-value=3.4  Score=33.96  Aligned_cols=53  Identities=30%  Similarity=0.446  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc-cccccHHHHHHHHHhh
Q psy17239         55 LANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKS-SSAFSDLEVCQLKQEI  114 (115)
Q Consensus        55 L~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l~~-~~~~sdlEv~~LkqEi  114 (115)
                      +.+++.+++.-...-+....+|..+..++.+       +.+... ..+++.-||.+|++++
T Consensus       232 l~el~~el~~l~~~i~~~~~~k~~l~~eI~e-------~~~~~~~~r~~t~~Ev~~Lk~~~  285 (325)
T PF08317_consen  232 LAELQEELEELEEKIEELEEQKQELLAEIAE-------AEKIREECRGWTRSEVKRLKAKV  285 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhcCCCHHHHHHHHHHH
Confidence            3344444444444444444444444444444       333322 3355666999998875

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=89.49  E-value=8.2  Score=29.77  Aligned_cols=18  Identities=17%  Similarity=0.342  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHhHHHHHHh
Q psy17239         12 ILGTLILIALTICWYVYR   29 (115)
Q Consensus        12 ~Lv~slvia~~GcWfAy~   29 (115)
                      ++++.+++|++++||.+.
T Consensus         5 ~~i~~~~vG~~~G~~~~~   22 (201)
T PF12072_consen    5 IAIVALIVGIGIGYLVRK   22 (201)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            455555666666666544

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.03  E-value=1.1  Score=31.14  Aligned_cols=19  Identities=5%  Similarity=-0.020  Sum_probs=10.3

Q ss_pred             HHHHHH-HHHHhHHHHHHhh
Q psy17239         12 ILGTLI-LIALTICWYVYRQ   30 (115)
Q Consensus        12 ~Lv~sl-via~~GcWfAy~Q   30 (115)
                      +.++++ ++.+||.|+|-+|
T Consensus         9 ~ivl~ll~G~~~G~fiark~   28 (71)
T COG3763           9 LIVLALLAGLIGGFFIARKQ   28 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            333444 4455677776655

>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12)

Probab=88.90  E-value=6.3  Score=33.25  Aligned_cols=68  Identities=19%  Similarity=0.386  Sum_probs=45.8

Q ss_pred             HHHHhHHHHHHhhhhh-----HH------HHHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239         18 LIALTICWYVYRQKES-----SQ------QHLRRMMKDMEGLQ------RAELDLANLQKELERARQEQENAASEKIKLE   80 (115)
Q Consensus        18 via~~GcWfAy~Qnk~-----Sk------~hl~kmmkDle~Lq------~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE   80 (115)
                      |+..+|.||+|.||-.     +.      .-|+.=|++|...+      +++.++.+.++.++..+.+-.++..+..+++
T Consensus        29 ~ml~AgA~Y~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~  108 (301)
T PF06120_consen   29 VMLGAGAWYYFYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQ  108 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344578999888632     22      23444566665544      6788888888888888888887777777777


Q ss_pred             HHHHH
Q psy17239         81 RRLQE   85 (115)
Q Consensus        81 ~kl~~   85 (115)
                      +.+.+
T Consensus       109 ~~~~~  113 (301)
T PF06120_consen  109 QQLAE  113 (301)
T ss_pred             HHHhc
Confidence            66654

>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P

Probab=88.48  E-value=0.14  Score=38.49  Aligned_cols=22  Identities=27%  Similarity=0.617  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHhHHHHHHhhhh
Q psy17239         11 YILGTLILIALTICWYVYRQKE   32 (115)
Q Consensus        11 ~~Lv~slvia~~GcWfAy~Qnk   32 (115)
                      |+.|+|.++.++||||.=+.+-
T Consensus        31 iL~VILgiLLliGCWYckRRSG   52 (118)
T PF14991_consen   31 ILIVILGILLLIGCWYCKRRSG   52 (118)
T ss_dssp             ----------------------
T ss_pred             eHHHHHHHHHHHhheeeeecch
Confidence            5667777888999999866553

>TIGR01386 cztS_silS_copS heavy metal sensor kinase

Probab=88.01  E-value=9  Score=30.20  Aligned_cols=26  Identities=19%  Similarity=0.176  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239         46 EGLQRAELDLANLQKELERARQEQEN   71 (115)
Q Consensus        46 e~Lq~AE~sL~dLQ~~Le~A~~e~~~   71 (115)
                      +.+...-.+|..|+.+|.....+.+.
T Consensus       218 dEi~~l~~~~n~m~~~l~~~~~~~~~  243 (457)
T TIGR01386       218 AELRELAQSFNAMLGRLEDAFQRLSQ  243 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566667777777777766555443

Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=87.79  E-value=2.5  Score=37.90  Aligned_cols=43  Identities=19%  Similarity=0.279  Sum_probs=33.3

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239         43 KDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE   85 (115)
Q Consensus        43 kDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~   85 (115)
                      -+...|..++....+|+++|+..+.|-+......+++|+++++
T Consensus        66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIke  108 (475)
T PRK13729         66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEK  108 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            3445677777888999999999887777777777788887776

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=87.40  E-value=12  Score=33.53  Aligned_cols=16  Identities=19%  Similarity=0.555  Sum_probs=8.1

Q ss_pred             HHHHHHHHHhHHHHHH
Q psy17239         13 LGTLILIALTICWYVY   28 (115)
Q Consensus        13 Lv~slvia~~GcWfAy   28 (115)
                      .+++.++|++..||+-
T Consensus         8 ~~~~~~~~~~~~~~~~   23 (475)
T PRK10361          8 YAVIALVGVAIGWLFA   23 (475)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333445554557773

>PRK11637 AmiB activator; Provisional

Probab=87.24  E-value=4.8  Score=33.88  Aligned_cols=20  Identities=10%  Similarity=0.253  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy17239         53 LDLANLQKELERARQEQENA   72 (115)
Q Consensus        53 ~sL~dLQ~~Le~A~~e~~~v   72 (115)
                      ..+.+++++|..++..-...
T Consensus        75 ~~l~~l~~qi~~~~~~i~~~   94 (428)
T PRK11637         75 AQLKKQEEAISQASRKLRET   94 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT

Probab=86.81  E-value=10  Score=28.47  Aligned_cols=43  Identities=9%  Similarity=0.348  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHhHHHHH--HhhhhhHHHHHHHHHHhhHHHHHHHH
Q psy17239         11 YILGTLILIALTICWYV--YRQKESSQQHLRRMMKDMEGLQRAEL   53 (115)
Q Consensus        11 ~~Lv~slvia~~GcWfA--y~Qnk~Sk~hl~kmmkDle~Lq~AE~   53 (115)
                      +++++++++.+.++|+.  |..=...+..+..-..+++..-+-.-
T Consensus         3 ~~ii~~i~~i~l~~~~~~~yN~L~~~~~~v~~a~s~I~~~l~rR~   47 (186)
T PF04011_consen    3 ILIILIIIVIILIVWFIMSYNSLVRLRNAVQEAWSNIDVQLQRRH   47 (186)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666667777788887  66666777888887777776544443

The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=86.37  E-value=6.6  Score=31.62  Aligned_cols=24  Identities=17%  Similarity=0.454  Sum_probs=13.7

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHhhh
Q psy17239          8 VKDYILGTLILIALTICWYVYRQK   31 (115)
Q Consensus         8 ~KD~~Lv~slvia~~GcWfAy~Qn   31 (115)
                      ++=.+|.+++|+|+.+.|+++.|-
T Consensus         5 ~~~~~~~~~~l~~~~~~~~~~a~a   28 (263)
T PRK10803          5 FRHHLLSLSLLVGVAAPWAAFAQA   28 (263)
T ss_pred             hHHHHHHHHHHHHHhhhHHHhcCC
Confidence            344455556666665667666544

>PRK12705 hypothetical protein; Provisional

Probab=86.02  E-value=9.7  Score=34.15  Aligned_cols=18  Identities=28%  Similarity=0.322  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHhHHHHHH
Q psy17239         11 YILGTLILIALTICWYVY   28 (115)
Q Consensus        11 ~~Lv~slvia~~GcWfAy   28 (115)
                      ++.+++++|++.-|||+|
T Consensus         6 ~~~~~~~~~~~~~~~~~~   23 (508)
T PRK12705          6 LLVILLLLIGLLLGVLVV   23 (508)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            345566677777777653

>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]

Probab=85.26  E-value=14  Score=29.46  Aligned_cols=66  Identities=23%  Similarity=0.301  Sum_probs=38.7

Q ss_pred             HHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239         13 LGTLILIALTICWYVYRQKESSQQHLRRMMKDM-EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE   85 (115)
Q Consensus        13 Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDl-e~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~   85 (115)
                      +++.+++-+.-.-++|++  +-|..+.-=-++| +.||+|     ++++.+..|+.-.......|..+|+|.++
T Consensus         8 ~iv~il~lvl~~l~~~Ir--~lq~~~e~k~~~l~e~l~~~-----e~~r~v~ea~~~ke~~~Kl~E~iekkiee   74 (175)
T COG4741           8 LIVFILALVLYLLRAYIR--SLQGKVESKARELEETLQKA-----ERERLVNEAQARKEEEWKLKEWIEKKIEE   74 (175)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444455654  2333332222233 457777     56677777777777777888889999876

>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain

Probab=84.99  E-value=9.5  Score=25.73  Aligned_cols=45  Identities=16%  Similarity=0.243  Sum_probs=26.2

Q ss_pred             HHHHhHHHHHHhhhhhHHHHHHHHHHh----hHHHHHHHHHHHHHHHHH
Q psy17239         18 LIALTICWYVYRQKESSQQHLRRMMKD----MEGLQRAELDLANLQKEL   62 (115)
Q Consensus        18 via~~GcWfAy~Qnk~Sk~hl~kmmkD----le~Lq~AE~sL~dLQ~~L   62 (115)
                      ++.++..+|+|.+-+.....+..+..+    +..+..+...+.+++..+
T Consensus        17 ~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   65 (181)
T PF12729_consen   17 LLLLIVGIVGLYSLSQINQNVEEIYENNLPSIELLNDIRSNLQRIRRAL   65 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            333444466666666666666666544    455566666666665554

The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].

>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=84.82  E-value=2.3  Score=26.04  Aligned_cols=32  Identities=22%  Similarity=0.442  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHH
Q psy17239         12 ILGTLILIALTICWYVYRQKESSQQHLRRMMK   43 (115)
Q Consensus        12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmk   43 (115)
                      +|++++-+.+.+.|-.|.=-|.+-.++++|.+
T Consensus         5 ~liVl~Pil~A~gWa~fNIg~~Al~Q~~~~~~   36 (36)
T PF06298_consen    5 LLIVLLPILPAAGWALFNIGRAALNQLQRMLN   36 (36)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhC
Confidence            57888888889999999999999999998864

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=84.71  E-value=15  Score=30.36  Aligned_cols=83  Identities=22%  Similarity=0.293  Sum_probs=44.4

Q ss_pred             CCCCCchHHHHHHHHHHHHHhHHHHHHhhhhhHHH---------HHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239          2 INSTSHVKDYILGTLILIALTICWYVYRQKESSQQ---------HLRRMMKD----MEGLQRAELDLANLQKELERARQE   68 (115)
Q Consensus         2 ~~~~n~~KD~~Lv~slvia~~GcWfAy~Qnk~Sk~---------hl~kmmkD----le~Lq~AE~sL~dLQ~~Le~A~~e   68 (115)
                      +.+++|--+.+--+|.. |-+-|.|+....+|+..         .+.++-..    .+.|...+..|.+++.+|..-+.+
T Consensus       179 ~~~p~F~~e~v~~~S~A-a~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~  257 (344)
T PF12777_consen  179 LKNPDFNPEKVRKASKA-AGSLCKWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKE  257 (344)
T ss_dssp             TTSTTSSHHHHHHH-TT-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCCHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555556666655532 23344444444444433         33333222    234445566666666667767777


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy17239         69 QENAASEKIKLERRLQE   85 (115)
Q Consensus        69 ~~~v~~EK~~LE~kl~~   85 (115)
                      .+....++..|+.++..
T Consensus       258 ~~~~~~e~~~l~~~~~~  274 (344)
T PF12777_consen  258 YEEAQKEKQELEEEIEE  274 (344)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777777777766554

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II)

Probab=84.33  E-value=0.7  Score=26.23  Aligned_cols=22  Identities=32%  Similarity=0.402  Sum_probs=20.1

Q ss_pred             CCCCchHHHHHHHHHHHHHhHH
Q psy17239          3 NSTSHVKDYILGTLILIALTIC   24 (115)
Q Consensus         3 ~~~n~~KD~~Lv~slvia~~Gc   24 (115)
                      ++++-+|-+++.++.+..+.||
T Consensus         2 ~~~~mmKkil~~l~a~~~LagC   23 (25)
T PF08139_consen    2 PSLSMMKKILFPLLALFMLAGC   23 (25)
T ss_pred             chHHHHHHHHHHHHHHHHHhhc
Confidence            5678899999999999999999

The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].

>TIGR02209 ftsL_broad cell division protein FtsL

Probab=84.21  E-value=9.2  Score=24.91  Aligned_cols=33  Identities=21%  Similarity=0.353  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239         52 ELDLANLQKELERARQEQENAASEKIKLERRLQE   85 (115)
Q Consensus        52 E~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~   85 (115)
                      ++.+.++|.+-..-+.|...-.. ...+|+.-++
T Consensus        37 ~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~Ar~   69 (85)
T TIGR02209        37 QLEIDKLQKEWRDLQLEVAELSR-HERIEKIAKK   69 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHH
Confidence            33444444444444444433222 3334444433

This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.

>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H

Probab=83.93  E-value=5.5  Score=25.97  Aligned_cols=72  Identities=21%  Similarity=0.117  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhhHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239         12 ILGTLILIALTICWYVYRQKESSQQHL--RRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE   85 (115)
Q Consensus        12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl--~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~   85 (115)
                      +|.+.++++++|.|+.+.....--.+-  ..++.+.-.|.  +..-..+++-....+.+-+....+-.....++..
T Consensus         4 al~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Lt--~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~   77 (125)
T PF13801_consen    4 ALNLLLAGALAGAAAAGPGPGGPGGPRRRHPMLADMLNLT--PEQQAKLRALMDEFRQEMRALRQELRAARQELRA   77 (125)
T ss_dssp             -----------------------TTHHHHHHHHHHHS-TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCCCCCCCcccchhhhhhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666777776665444332221  22222222222  2222334444444444444444444444455544

>PRK06531 yajC preprotein translocase subunit YajC; Validated

Probab=83.79  E-value=1.7  Score=31.98  Aligned_cols=33  Identities=15%  Similarity=0.342  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHhHHHHHHh-hhhhHHHHHHHHHHh
Q psy17239         11 YILGTLILIALTICWYVYR-QKESSQQHLRRMMKD   44 (115)
Q Consensus        11 ~~Lv~slvia~~GcWfAy~-Qnk~Sk~hl~kmmkD   44 (115)
                      +.+++.+++-++..||.++ |+|..|.| .+|+.-
T Consensus         3 ~~~il~~vv~~~i~yf~iRPQkKr~Ke~-~em~~s   36 (113)
T PRK06531          3 IPTIIMFVVMLGLIFFMQRQQKKQAQER-QNQLNA   36 (113)
T ss_pred             hHHHHHHHHHHHHHHheechHHHHHHHH-HHHHHh
Confidence            4555555555555677764 44444444 555543

>PF13268 DUF4059: Protein of unknown function (DUF4059)

Probab=83.25  E-value=1.8  Score=30.11  Aligned_cols=27  Identities=11%  Similarity=0.481  Sum_probs=23.8

Q ss_pred             chHHHHHHHHHHHHHhHHHHHHhhhhh
Q psy17239          7 HVKDYILGTLILIALTICWYVYRQKES   33 (115)
Q Consensus         7 ~~KD~~Lv~slvia~~GcWfAy~Qnk~   33 (115)
                      |++-+++.+..|+.++|.|+.|+-.|+
T Consensus         9 YlqgL~ls~i~V~~~~~~wi~~Ra~~~   35 (72)
T PF13268_consen    9 YLQGLLLSSILVLLVSGIWILWRALRK   35 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            678899999999999999999987654

>PHA02047 phage lambda Rz1-like protein

Probab=83.25  E-value=16  Score=26.92  Aligned_cols=20  Identities=10%  Similarity=0.094  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHhHHHHHHhh
Q psy17239         11 YILGTLILIALTICWYVYRQ   30 (115)
Q Consensus        11 ~~Lv~slvia~~GcWfAy~Q   30 (115)
                      ++.+.+||...+|.-|.|.|
T Consensus         5 ~~~~~~~v~~~~g~~y~~~~   24 (101)
T PHA02047          5 IVAILVLVVVALGASYGFVQ   24 (101)
T ss_pred             HHHHHHHHHHHhhhhHHHHH
Confidence            34445555555565666666

>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans

Probab=82.96  E-value=9.2  Score=28.05  Aligned_cols=34  Identities=15%  Similarity=0.240  Sum_probs=22.2

Q ss_pred             HHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHH
Q psy17239         16 LILIALTICWYVYRQKESSQQHLRRMMKDMEGLQ   49 (115)
Q Consensus        16 slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq   49 (115)
                      ..|.+...+|-+|++.++.+.+-...-..++.|+
T Consensus        85 F~Va~~li~~E~~Rs~~ke~~Ke~~~~~~l~~L~  118 (134)
T PF07047_consen   85 FSVAAGLIIYEYWRSARKEAKKEEELQERLEELE  118 (134)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            3355556677788888887777666555555553

This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.

>PRK09835 sensor kinase CusS; Provisional

Probab=82.91  E-value=20  Score=28.71  Aligned_cols=24  Identities=17%  Similarity=0.272  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239         47 GLQRAELDLANLQKELERARQEQE   70 (115)
Q Consensus        47 ~Lq~AE~sL~dLQ~~Le~A~~e~~   70 (115)
                      .+...-.+|..|..+|+..-+.++
T Consensus       240 El~~l~~~~n~m~~~l~~~~~~~~  263 (482)
T PRK09835        240 ELEQLVLSFNHMIERIEDVFTRQS  263 (482)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556677777777777655533

>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative

Probab=82.60  E-value=1.5  Score=31.64  Aligned_cols=19  Identities=21%  Similarity=0.389  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHhHHHHHHh
Q psy17239         11 YILGTLILIALTICWYVYR   29 (115)
Q Consensus        11 ~~Lv~slvia~~GcWfAy~   29 (115)
                      +++++++++.++|||.||+
T Consensus        76 ~tl~~lllGv~~G~~n~w~   94 (100)
T TIGR02230        76 WTLTMLIVGVVIGCLNAWH   94 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6778888888899999985

This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=81.34  E-value=34  Score=29.67  Aligned_cols=32  Identities=25%  Similarity=0.267  Sum_probs=17.1

Q ss_pred             hhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q psy17239         44 DMEGLQRAELDLANL----QKELERARQEQENAASE   75 (115)
Q Consensus        44 Dle~Lq~AE~sL~dL----Q~~Le~A~~e~~~v~~E   75 (115)
                      +|+.-..+...+.++    ++.|+.|+.|.+....+
T Consensus        40 ~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~   75 (445)
T PRK13428         40 QLAESATAADRLAEADQAHTKAVEDAKAEAARVVEE   75 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333445555554    44477777766555444

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=80.94  E-value=17  Score=25.71  Aligned_cols=65  Identities=15%  Similarity=0.227  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHhHHHHHHhhhh----hHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239         11 YILGTLILIALTICWYVYRQKE----SSQQHLRRMMKDMEGLQ-RAELDLANLQKELERARQEQENAASE   75 (115)
Q Consensus        11 ~~Lv~slvia~~GcWfAy~Qnk----~Sk~hl~kmmkDle~Lq-~AE~sL~dLQ~~Le~A~~e~~~v~~E   75 (115)
                      +.+|..+++.++..+|+|.==.    .-+..|...+.+-+.++ .|+..+.+.+++|+.|+.+-.....+
T Consensus        10 ~~~i~flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~   79 (140)
T PRK07353         10 LMAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAE   79 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666677777777775211    11345566666665553 46777777777888777765544333

>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []

Probab=80.33  E-value=0.59  Score=36.61  Aligned_cols=26  Identities=27%  Similarity=0.468  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHhHHHH------------HHhhhhhHHH
Q psy17239         11 YILGTLILIALTICWY------------VYRQKESSQQ   36 (115)
Q Consensus        11 ~~Lv~slvia~~GcWf------------Ay~Qnk~Sk~   36 (115)
                      ++|+++++.|+|-.|+            -|-|+|+||.
T Consensus        17 ~Ll~lLl~cgiGcvwhwkhr~~~~ftLPkflqRRssk~   54 (158)
T PF11770_consen   17 SLLLLLLLCGIGCVWHWKHRDSTRFTLPKFLQRRSSKR   54 (158)
T ss_pred             HHHHHHHHHhcceEEEeeccCccccchHHHHHhhhhhc
Confidence            4566677777777787            2567777774

In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].

>CHL00196 psbY photosystem II protein Y; Provisional

Probab=80.20  E-value=5  Score=24.63  Aligned_cols=31  Identities=13%  Similarity=0.294  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHH
Q psy17239         12 ILGTLILIALTICWYVYRQKESSQQHLRRMM   42 (115)
Q Consensus        12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmm   42 (115)
                      +|++++-+.+.+.|-.|.=.|.+-+++++|.
T Consensus         5 lliVl~Pil~A~~Wa~fNIg~~Al~Q~q~~~   35 (36)
T CHL00196          5 LLVIAAPVLAAASWALFNIGRLAIQQIQRLS   35 (36)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence            6788888999999999999999988888874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	89.44
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	83.79

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=89.44  E-value=1.2  Score=41.10  Aligned_cols=51  Identities=24%  Similarity=0.395  Sum_probs=36.5

Q ss_pred             HHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239         35 QQHLRRMMKDMEGLQRAELD-------LANLQKELERARQEQENAASEKIKLERRLQE   85 (115)
Q Consensus        35 k~hl~kmmkDle~Lq~AE~s-------L~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~   85 (115)
                      ...+.+|-+|++.|+..+.+       ..+|+++++..+++.+....|+..+|++...
T Consensus       959 ~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~ 1016 (1080)
T 2dfs_A          959 STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016 (1080)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666665544       4667788888888888888888888887765

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=83.79  E-value=5  Score=27.45  Aligned_cols=40  Identities=15%  Similarity=0.268  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239         46 EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE   85 (115)
Q Consensus        46 e~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~   85 (115)
                      |.|.+...++..++++|..|...++.-..|..+|+.+|++
T Consensus        31 EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee   70 (81)
T 1wt6_A           31 REMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL   70 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777788888899999999999999999999999888

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00