Psyllid ID: psy1723

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
MFCLRLTVTTTLEFHVGHESYRKSDSGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVGPKMRNFKTSRRSPGKQEGVGSIPAERKLKLNISTSPYYYFSLSLPPSLLYLARIGGASLIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCRQKSLA
ccHHHHHHccHHHHccccHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHccccHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHccccEEEcccccEEEHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHcc
ccEEEEEcccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcccHHHHHHHHHHHHHHHHHHccccccccEcccHHHccccHHHHHHHHHHHHHcccccHHHHHHHHcccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHccccEEcccccEEEcHHHHHHHHHcccccccccccccHHHccccHHHHHHHHHHHHHHHHHHcc
mfclrltvtttlefhvghesyrksdsgFLQHIGMMARfdnilgnetiHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLvgpkmrnfktsrrspgkqegvgsipaerklklnistspyyyfslslppsLLYLARIGGASLIPDLRRVAVLVEKLGAQlqsdeallagapdeyldpimntimlepvtlpssrqtldkSTIARHLlsdqtdpfnrspltmeqvipntqlQTQIQDWIRQCRQKSLA
mfclrltvtttlefhvghesyrksDSGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVGPKMrnfktsrrspgkqegvgsipaerklKLNISTSPYYYFSLSLPPSLLYLARIGGASLIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCRQKSLA
MFCLRLTVTTTLEFHVGHESYRKSDSGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVGPKMRNFKTSRRSPGKQEGVGSIPAERKLKLNISTspyyyfslslppsllylARIGGASLIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCRQKSLA
*FCLRLTVTTTLEFHVGHESYRKSDSGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVGPK*************************LKLNISTSPYYYFSLSLPPSLLYLARIGGASLIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVT***************************************QLQTQIQDWIR********
*FCLR*********************************DNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVGPKMRNFKTSRRSPGKQEGVGSIPAERKLKLNISTSPYYYFSLSLPPSLLYLARIGGASLIPDLRRVA******************GAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWI**CR*****
MFCLRLTVTTTLEFHVGHESYRKSDSGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVGPKMRNF**************SIPAERKLKLNISTSPYYYFSLSLPPSLLYLARIGGASLIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIR********
MFCLRLTVTTTLEFHVGHESYRKSDSGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVGPKMRNFKTSRRSPGKQEGVGSIPAERKLKLNISTSPYYYFSLSLPPSLLYLARIGGASLIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCRQ****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFCLRLTVTTTLEFHVGHESYRKSDSGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVGPKMRNFKTSRRSPGKQEGVGSIPAERKLKLNISTSPYYYFSLSLPPSLLYLARIGGASLIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCRQKSLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query246 2.2.26 [Sep-21-2011]
Q5R9G31066 Ubiquitin conjugation fac yes N/A 0.898 0.207 0.451 2e-46
Q141391066 Ubiquitin conjugation fac yes N/A 0.898 0.207 0.451 3e-46
A5PKG61067 Ubiquitin conjugation fac yes N/A 0.898 0.207 0.451 5e-46
Q6P7A21066 Ubiquitin conjugation fac yes N/A 0.898 0.207 0.451 1e-45
Q9HE051010 Ubiquitin conjugation fac yes N/A 0.821 0.2 0.355 1e-28
Q9LF411038 Probable ubiquitin conjug yes N/A 0.841 0.199 0.342 9e-26
P54860961 E4 ubiquitin-protein liga yes N/A 0.825 0.211 0.310 5e-22
Q9ES001173 Ubiquitin conjugation fac no N/A 0.800 0.167 0.320 5e-20
O951551302 Ubiquitin conjugation fac no N/A 0.800 0.151 0.320 9e-20
Q09349980 Probable ubiquitin conjug yes N/A 0.707 0.177 0.344 4e-18
>sp|Q5R9G3|UBE4A_PONAB Ubiquitin conjugation factor E4 A OS=Pongo abelii GN=UBE4A PE=2 SV=2 Back     alignment and function desciption
 Score =  185 bits (470), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/239 (45%), Positives = 149/239 (62%), Gaps = 18/239 (7%)

Query: 19   ESYRKSDSGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFL 78
            E+ R+ ++G LQ  G +ARF NI+ NETI TL +LTSEI+S+F H  + +RI +MLNYFL
Sbjct: 827  EARREKEAG-LQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFL 885

Query: 79   FHLVGPKMRNFKTSRRSP---GKQEGVGSIPAERKLKLNISTSPYYYFSL-----SLPPS 130
             HLVGPKM   K    S      Q+ V  I     + LN+     +  ++     S  P+
Sbjct: 886  QHLVGPKMGALKVKDFSEFDFKPQQLVSDICT---IYLNLGDEENFCATVPKDGRSYSPT 942

Query: 131  LL-----YLARIGG-ASLIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIML 184
            L       L +I    ++I     +A  ++ L    Q +E   A A DE+LDPIM+T+M 
Sbjct: 943  LFAQTVRVLKKINKPGNMIVAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMC 1002

Query: 185  EPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCRQK 243
            +PV LPSSR T+D+STIARHLLSDQTDPFNRSPLTM+Q+ PNT+L+ +IQ W+ + +Q+
Sbjct: 1003 DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 1061
Binds to the ubiquitin moieties of preformed conjugates and catalyzes ubiquitin chain assembly in conjunction with E1, E2, and E3.
Pongo abelii (taxid: 9601)
>sp|Q14139|UBE4A_HUMAN Ubiquitin conjugation factor E4 A OS=Homo sapiens GN=UBE4A PE=1 SV=2 Back     alignment and function description
>sp|A5PKG6|UBE4A_BOVIN Ubiquitin conjugation factor E4 A OS=Bos taurus GN=UBE4A PE=2 SV=1 Back     alignment and function description
>sp|Q6P7A2|UBE4A_RAT Ubiquitin conjugation factor E4 A OS=Rattus norvegicus GN=Ube4a PE=2 SV=1 Back     alignment and function description
>sp|Q9HE05|UFD2_SCHPO Ubiquitin conjugation factor E4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ufd2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LF41|UBE4_ARATH Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana GN=PUB1 PE=1 SV=1 Back     alignment and function description
>sp|P54860|UFD2_YEAST E4 ubiquitin-protein ligase UFD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UFD2 PE=1 SV=3 Back     alignment and function description
>sp|Q9ES00|UBE4B_MOUSE Ubiquitin conjugation factor E4 B OS=Mus musculus GN=Ube4b PE=1 SV=3 Back     alignment and function description
>sp|O95155|UBE4B_HUMAN Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1 Back     alignment and function description
>sp|Q09349|UBE4_CAEEL Probable ubiquitin conjugation factor E4 OS=Caenorhabditis elegans GN=ufd-2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query246
91079660 1003 PREDICTED: similar to predicted protein 0.902 0.221 0.495 1e-58
307176257 991 Ubiquitin conjugation factor E4 A [Campo 0.910 0.226 0.491 4e-58
307206653 1041 Ubiquitin conjugation factor E4 A [Harpe 0.902 0.213 0.495 9e-58
332020395 1030 Ubiquitin conjugation factor E4 A [Acrom 0.886 0.211 0.495 2e-56
194760344 993 GF14454 [Drosophila ananassae] gi|190616 0.930 0.230 0.468 3e-56
195436965 1001 GK18107 [Drosophila willistoni] gi|19416 0.894 0.219 0.486 6e-56
19920838 993 CG11070 [Drosophila melanogaster] gi|590 0.878 0.217 0.482 7e-56
195577086 993 GD23424 [Drosophila simulans] gi|1941904 0.878 0.217 0.482 1e-55
195156505 996 GL25585 [Drosophila persimilis] gi|19847 0.930 0.229 0.472 2e-55
195117122 1013 GI17728 [Drosophila mojavensis] gi|19391 0.906 0.220 0.476 2e-55
>gi|91079660|ref|XP_966451.1| PREDICTED: similar to predicted protein [Tribolium castaneum] gi|270003363|gb|EEZ99810.1| hypothetical protein TcasGA2_TC002590 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 115/232 (49%), Positives = 162/232 (69%), Gaps = 10/232 (4%)

Query: 22   RKSDSGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHL 81
            R  + G++ HIGM+A+FDNILG +TI TLE LTSEI  +F HSTMVDR+AAMLNYFL++L
Sbjct: 772  RTQNLGYMHHIGMIAKFDNILGRDTIKTLEKLTSEITIVFTHSTMVDRVAAMLNYFLYNL 831

Query: 82   VGPKMRNFKTSRRSPGKQEGVGSIPAERKLKLNISTSPYYYFSLS-----LPPSLL---- 132
            VGPK +NFK         +   ++    K+ +N+  S  +  ++S       P L     
Sbjct: 832  VGPKKKNFKVKDSKEYSFDPATTVLNICKIYVNLKESSSFCLAVSQDGRSYSPQLFSYAE 891

Query: 133  -YLARIGGASLIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPS 191
              L RIGG SLI +L+ VA+ V +   + Q+ E  +A AP+ +LDPIM+T+M +PV LPS
Sbjct: 892  DVLIRIGGGSLIGELKEVAMRVAEKAQEQQASEEAIAEAPEHFLDPIMSTLMTDPVILPS 951

Query: 192  SRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCRQK 243
            S+QT+D++TIARHLLSDQTDPFNR+PL+M+QVIPNT+L  +I++W+ + ++K
Sbjct: 952  SKQTVDRTTIARHLLSDQTDPFNRAPLSMDQVIPNTELAEEIRNWLDERKKK 1003

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307176257|gb|EFN65888.1| Ubiquitin conjugation factor E4 A [Camponotus floridanus] Back     alignment and taxonomy information
>gi|307206653|gb|EFN84625.1| Ubiquitin conjugation factor E4 A [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332020395|gb|EGI60815.1| Ubiquitin conjugation factor E4 A [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|194760344|ref|XP_001962401.1| GF14454 [Drosophila ananassae] gi|190616098|gb|EDV31622.1| GF14454 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|195436965|ref|XP_002066415.1| GK18107 [Drosophila willistoni] gi|194162500|gb|EDW77401.1| GK18107 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|19920838|ref|NP_609060.1| CG11070 [Drosophila melanogaster] gi|5901868|gb|AAD55442.1|AF181657_1 BcDNA.LD34475 [Drosophila melanogaster] gi|10728617|gb|AAF52416.2| CG11070 [Drosophila melanogaster] gi|220943682|gb|ACL84384.1| CG11070-PA [synthetic construct] Back     alignment and taxonomy information
>gi|195577086|ref|XP_002078404.1| GD23424 [Drosophila simulans] gi|194190413|gb|EDX03989.1| GD23424 [Drosophila simulans] Back     alignment and taxonomy information
>gi|195156505|ref|XP_002019140.1| GL25585 [Drosophila persimilis] gi|198471960|ref|XP_001355791.2| GA10741 [Drosophila pseudoobscura pseudoobscura] gi|194115293|gb|EDW37336.1| GL25585 [Drosophila persimilis] gi|198139542|gb|EAL32850.2| GA10741 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195117122|ref|XP_002003098.1| GI17728 [Drosophila mojavensis] gi|193913673|gb|EDW12540.1| GI17728 [Drosophila mojavensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query246
FB|FBgn0028467993 CG11070 [Drosophila melanogast 0.869 0.215 0.477 1.4e-49
UNIPROTKB|B7Z7P0538 UBE4A "cDNA FLJ51394, highly s 0.418 0.191 0.543 5.9e-44
UNIPROTKB|F1M8W61030 Ube4a "Ubiquitin conjugation f 0.418 0.1 0.543 1.1e-42
UNIPROTKB|Q141391066 UBE4A "Ubiquitin conjugation f 0.418 0.096 0.543 1.3e-42
UNIPROTKB|F1M9N51066 Ube4a "Ubiquitin conjugation f 0.418 0.096 0.543 1.3e-42
UNIPROTKB|E2RPU31066 UBE4A "Uncharacterized protein 0.418 0.096 0.543 1.6e-42
UNIPROTKB|A5PKG61067 UBE4A "Ubiquitin conjugation f 0.418 0.096 0.543 1.6e-42
UNIPROTKB|F1SAK71067 UBE4A "Uncharacterized protein 0.418 0.096 0.543 1.6e-42
RGD|13031731066 Ube4a "ubiquitination factor E 0.418 0.096 0.543 3.4e-42
UNIPROTKB|E1C6M51072 CBL "Uncharacterized protein" 0.361 0.083 0.6 2.4e-41
FB|FBgn0028467 CG11070 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 525 (189.9 bits), Expect = 1.4e-49, P = 1.4e-49
 Identities = 107/224 (47%), Positives = 149/224 (66%)

Query:    29 LQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVGPKMRN 88
             LQH+GM+ARFDNI+G +TI+ L+ LTS+I+SIFCH++MVDR+AAMLNYFL +LVGPK   
Sbjct:   764 LQHLGMLARFDNIIGRDTINLLKLLTSKIKSIFCHNSMVDRMAAMLNYFLLNLVGPKKER 823

Query:    89 FKTSRRSPGKQEGVGSIPAERKLKLNISTXXX----------XXXXXXXXXXXXXXARIG 138
             FK   +   + +   ++     + +N+S+                            RIG
Sbjct:   824 FKVKDKKEFEFDPAQTVIEISHIYINLSSDESFCLAVSQDGRSYSEQLFSYAENILIRIG 883

Query:   139 GASLIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDK 198
             G  LI D+   AV V ++GAQ + ++ LLA AP+EYLDPI++T+M +PV LPSS+ T+D+
Sbjct:   884 GGQLIGDMSEFAVKVARMGAQYKEEQELLADAPEEYLDPIISTLMTDPVVLPSSKVTVDR 943

Query:   199 STIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCRQ 242
             STIARHLLSDQTDPFNR PLTM++V  N  L+ +I+ WI+  R+
Sbjct:   944 STIARHLLSDQTDPFNREPLTMDKVKSNEALKQEIESWIQGKRE 987
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS
GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA
GO:0000151 "ubiquitin ligase complex" evidence=IEA
GO:0016567 "protein ubiquitination" evidence=IEA
UNIPROTKB|B7Z7P0 UBE4A "cDNA FLJ51394, highly similar to Ubiquitin conjugation factor E4 A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1M8W6 Ube4a "Ubiquitin conjugation factor E4 A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q14139 UBE4A "Ubiquitin conjugation factor E4 A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1M9N5 Ube4a "Ubiquitin conjugation factor E4 A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RPU3 UBE4A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A5PKG6 UBE4A "Ubiquitin conjugation factor E4 A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SAK7 UBE4A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1303173 Ube4a "ubiquitination factor E4A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C6M5 CBL "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
COG5113929 COG5113, UFD2, Ubiquitin fusion degradation protei 1e-34
pfam0456473 pfam04564, U-box, U-box domain 5e-27
pfam10408625 pfam10408, Ufd2P_core, Ubiquitin elongating factor 3e-22
smart0050463 smart00504, Ubox, Modified RING finger domain 3e-20
>gnl|CDD|227444 COG5113, UFD2, Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  131 bits (330), Expect = 1e-34
 Identities = 73/226 (32%), Positives = 109/226 (48%), Gaps = 24/226 (10%)

Query: 36  ARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVGPKMRNFKTSRRS 95
           AR   +L +       ++  EI   F    +V R+A MLNY L  L GPK  + K   + 
Sbjct: 705 ARNSCLLVDGCFDLFTHILDEIPDAFLVDEIVSRLARMLNYNLKILTGPKCTDLKV--KD 762

Query: 96  PGKQEGVGSIPAERKLK------LNISTSPYY---------YFSLSL---PPSLLYLARI 137
           P +        A+  L+      +N+ +   +          F +        +     +
Sbjct: 763 PEQY----GFNAKNLLRRMVMVYINLRSESKFVEAVASDKRSFDIDFFRRALRICENKYL 818

Query: 138 GGASLIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLD 197
              S I +LR     +EK+      +E  +   PDE+LDP+M TIM +PV LP+SR T+D
Sbjct: 819 ISESQIEELRSFINRLEKVRVIEAVEEEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITID 878

Query: 198 KSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCRQK 243
           +STI  HLLSD TDPFNR PLT++ V PN +L+ +I  + +   QK
Sbjct: 879 RSTIKAHLLSDGTDPFNRMPLTLDDVTPNAELREKINRFYKCKGQK 924

Length = 929
>gnl|CDD|203049 pfam04564, U-box, U-box domain Back     alignment and domain information
>gnl|CDD|220735 pfam10408, Ufd2P_core, Ubiquitin elongating factor core Back     alignment and domain information
>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 246
KOG2042|consensus943 100.0
COG5113929 UFD2 Ubiquitin fusion degradation protein 2 [Postt 100.0
PF10408629 Ufd2P_core: Ubiquitin elongating factor core; Inte 100.0
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 99.93
smart0050463 Ubox Modified RING finger domain. Modified RING fi 99.79
KOG4642|consensus284 99.49
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 98.89
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 98.84
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 98.8
KOG0289|consensus 506 98.71
PHA02929238 N1R/p28-like protein; Provisional 98.29
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 98.14
COG5222427 Uncharacterized conserved protein, contains RING Z 98.12
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 98.06
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 97.94
KOG0823|consensus 230 97.91
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 97.87
KOG2177|consensus 386 97.78
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 97.75
KOG0317|consensus293 97.72
KOG0287|consensus 442 97.6
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 97.51
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 97.46
cd0016245 RING RING-finger (Really Interesting New Gene) dom 97.31
KOG0297|consensus 391 97.26
KOG4692|consensus489 97.21
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 97.2
PF04641260 Rtf2: Rtf2 RING-finger 97.18
KOG0320|consensus187 97.14
KOG2979|consensus262 97.11
KOG3039|consensus303 97.06
TIGR00570 309 cdk7 CDK-activating kinase assembly factor MAT1. A 97.0
PHA02926242 zinc finger-like protein; Provisional 96.99
KOG0883|consensus 518 96.95
PF06416113 DUF1076: Protein of unknown function (DUF1076); In 96.87
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 96.74
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 96.67
KOG0826|consensus357 96.55
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 96.52
KOG3039|consensus 303 96.3
KOG4159|consensus 398 96.29
KOG2164|consensus 513 96.14
KOG2660|consensus 331 96.02
KOG0802|consensus 543 95.82
KOG0311|consensus 381 95.79
KOG3113|consensus 293 95.27
COG5243 491 HRD1 HRD ubiquitin ligase complex, ER membrane com 95.05
PF1463444 zf-RING_5: zinc-RING finger domain 94.89
PF04641 260 Rtf2: Rtf2 RING-finger 94.79
KOG0978|consensus698 94.63
PF0289150 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 94.57
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 93.07
KOG0824|consensus 324 92.53
KOG2817|consensus394 91.74
KOG1813|consensus313 91.42
KOG4367|consensus 699 90.79
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 90.59
KOG1002|consensus 791 90.0
KOG0396|consensus389 87.56
COG5109396 Uncharacterized conserved protein, contains RING Z 85.07
KOG4628|consensus348 84.36
COG5627275 MMS21 DNA repair protein MMS21 [DNA replication, r 82.0
COG5152259 Uncharacterized conserved protein, contains RING a 81.82
COG519488 APC11 Component of SCF ubiquitin ligase and anapha 80.42
>KOG2042|consensus Back     alignment and domain information 
Probab=100.00  E-value=5.6e-56  Score=449.57  Aligned_cols=234  Identities=39%  Similarity=0.549  Sum_probs=221.5

Q ss_pred             eeccccchhccCCChhhhhhhhHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHhcCC
Q psy1723           5 RLTVTTTLEFHVGHESYRKSDSGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVGP   84 (246)
Q Consensus         5 ~~~~~~~~~w~~l~~~~r~~~~~~l~~~~~~a~~~~~l~~eti~~l~~lt~~~~~~F~~~eiv~Rla~mLn~~L~~LvGp   84 (246)
                      +-++.|.++|..+++++|+++.+++++.+++||+++.+|++|+.||+++|+++|++|++|++++|+|+||||||.+||||
T Consensus       690 q~~~kn~~q~~~~~~~~~e~~~~~l~s~~r~art~~~la~et~~ll~~~tk~i~~~Fl~~elv~rla~MLN~nL~~lvGP  769 (943)
T KOG2042|consen  690 QPSGKNIDQWTKLKREEREAKWGRLASDERQARTGLALANETIDLLHLLTKAIPEPFLLPELVERLAAMLNYNLSQLVGP  769 (943)
T ss_pred             hhhhhhhhhccCCcHHHHHHHHhccccchhhhcccceeccchhhHHHHHHhhcchhhcchhHHHHHHHHHhhhHHHhhCC
Confidence            44678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCccccCCCCCCCCCccccchhh-----HHHHhccCCcchhhhhhc-------Ccchh-----hHhh-hcC-CCchhH
Q psy1723          85 KMRNFKTSRRSPGKQEGVGSIPAER-----KLKLNISTSPYYYFSLSL-------PPSLL-----YLAR-IGG-ASLIPD  145 (246)
Q Consensus        85 k~~~LkVkn~e~~~~~~y~F~Pk~l-----~iy~nl~~~~~~~F~~av-------~~~~F-----~l~~-i~~-~~~i~~  145 (246)
                      ||.+||||||++     |+|+|+++     +||+||++.+.  |+.||       |+++|     ++++ +++ +..|+.
T Consensus       770 K~~~Lkvkdp~~-----y~fePk~ll~~i~~iYlnl~~~~~--F~~avA~D~RSys~~lF~~a~~~~~k~~l~~~~~Ie~  842 (943)
T KOG2042|consen  770 KCSDLKVKDPEK-----YGFEPKQLLSQLSDIYLNLSSEPS--FVEAVAKDGRSYSEELFNHAISILRKRILKSSRQIEE  842 (943)
T ss_pred             cccccccCCccc-----cCCChHHHHHHHHHHHHhhccchh--HHHHHhccccccCHHHHhhhHHHHHHhhcccHHHHHH
Confidence            999999999999     99999999     99999998888  99999       78899     6733 333 458999


Q ss_pred             HHHHHHHHHHHHhhccchhhhhcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcc
Q psy1723         146 LRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIP  225 (246)
Q Consensus       146 ~~~l~~~v~~~~~~~~~~e~~~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lip  225 (246)
                      |..|++++++.....++++++++|+||+|+||||+++|.|||++|+||+++||++|.+|++++++|||||+||+.+++.|
T Consensus       843 ~s~la~~~~~~~~~~~~eee~l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~p  922 (943)
T KOG2042|consen  843 FSELAERVEATASIDAEEEEELGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSP  922 (943)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCC
Confidence            99999999999999888999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhhhhhc
Q psy1723         226 NTQLQTQIQDWIRQCRQKSL  245 (246)
Q Consensus       226 n~~Lk~~Ie~w~~~~~~~~~  245 (246)
                      |.+||+.|+.|..+++.++.
T Consensus       923 n~eLK~kI~~~~~ek~~~~~  942 (943)
T KOG2042|consen  923 NEELKAKIRCWIKEKRNKKR  942 (943)
T ss_pred             CHHHHHHHHHHHHHhhhccC
Confidence            99999999999999988653

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38 Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>KOG4642|consensus Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>KOG0289|consensus Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>KOG0823|consensus Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>KOG2177|consensus Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>KOG0317|consensus Back     alignment and domain information
>KOG0287|consensus Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>KOG0297|consensus Back     alignment and domain information
>KOG4692|consensus Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>KOG0320|consensus Back     alignment and domain information
>KOG2979|consensus Back     alignment and domain information
>KOG3039|consensus Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>KOG0883|consensus Back     alignment and domain information
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74) Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0826|consensus Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG3039|consensus Back     alignment and domain information
>KOG4159|consensus Back     alignment and domain information
>KOG2164|consensus Back     alignment and domain information
>KOG2660|consensus Back     alignment and domain information
>KOG0802|consensus Back     alignment and domain information
>KOG0311|consensus Back     alignment and domain information
>KOG3113|consensus Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>KOG0978|consensus Back     alignment and domain information
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>KOG0824|consensus Back     alignment and domain information
>KOG2817|consensus Back     alignment and domain information
>KOG1813|consensus Back     alignment and domain information
>KOG4367|consensus Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1002|consensus Back     alignment and domain information
>KOG0396|consensus Back     alignment and domain information
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG4628|consensus Back     alignment and domain information
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
1wgm_A98 Solution Structure Of The U-Box In Human Ubiquitin 1e-26
3m62_A968 Crystal Structure Of Ufd2 In Complex With The Ubiqu 4e-22
2qiz_A982 Structure Of The Yeast U-Box-Containing Ubiquitin L 4e-22
2qj0_A982 Structure Of The Yeast U-Box-Containing Ubiquitin L 3e-19
2kre_A100 Solution Structure Of E4bUFD2A U-Box Domain Length 6e-15
2kr4_A85 U-Box Domain Of The E3 Ubiquitin Ligase E4b Length 1e-13
2oxq_C80 Structure Of The Ubch5 :chip U-Box Complex Length = 5e-04
2c2l_A281 Crystal Structure Of The Chip U-Box E3 Ubiquitin Li 8e-04
>pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin Conjugation Factor E4a Length = 98 Back     alignment and structure 
Iteration: 1

 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/84 (64%), Positives = 70/84 (83%)
Query: 161 QSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTM 220
           Q +E   A A DE+LDPIM+T+M +PV LPSSR T+D+STIARHLLSDQTDPFNRSPLTM
Sbjct: 10  QQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69
Query: 221 EQVIPNTQLQTQIQDWIRQCRQKS 244
           +Q+ PNT+L+ +IQ W+ + +Q+S
Sbjct: 70  DQIRPNTELKEKIQRWLAERKQQS 93
>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like (Ubl) Domain Of Rad23 Length = 968 Back     alignment and structure
>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase Ufd2p Length = 982 Back     alignment and structure
>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase Ufd2p Length = 982 Back     alignment and structure
>pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain Length = 100 Back     alignment and structure
>pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b Length = 85 Back     alignment and structure
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex Length = 80 Back     alignment and structure
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
3m62_A968 Ubiquitin conjugation factor E4; armadillo-like re 1e-46
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 2e-33
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 1e-32
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 1e-30
2f42_A179 STIP1 homology and U-box containing protein 1; cha 5e-22
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 1e-13
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 1e-11
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 8e-11
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 8e-09
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 3e-04
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968 Back     alignment and structure
 Score =  164 bits (417), Expect = 1e-46
 Identities = 71/239 (29%), Positives = 112/239 (46%), Gaps = 13/239 (5%)

Query: 19  ESYRKSDSGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFL 78
           E   K     L      A+    L ++++   E  + +I + F    +V R+A+MLNY L
Sbjct: 724 EEEDKELQTRLASASRQAKSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLASMLNYNL 783

Query: 79  FHLVGPKMRNFKTSRRSPGKQEGVGSIPAERKLKLNISTSPYYYFSL-----SLPPSLLY 133
             LVGPK    K              + A   + +N+S    +  ++     S   +L  
Sbjct: 784 ESLVGPKCGELKVKDPQSYSFNPKDLLKALTTVYINLSEQSEFISAVAKDERSFNRNLFV 843

Query: 134 LAR--------IGGASLIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLE 185
            A         +     I  L   A   E+     + ++      PDE+LDP+M TIM +
Sbjct: 844 RAVDILGRKTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKD 903

Query: 186 PVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCRQKS 244
           PV LP+S+  +D+STI  HLLSD TDPFNR PL +E V PN +L+ +I  + +Q ++++
Sbjct: 904 PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKEEA 962
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98 Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100 Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85 Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179 Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78 Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61 Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94 Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query246
3m62_A968 Ubiquitin conjugation factor E4; armadillo-like re 100.0
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 99.92
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 99.92
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 99.91
2f42_A179 STIP1 homology and U-box containing protein 1; cha 99.86
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 99.8
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 99.78
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 99.75
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 99.73
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 99.56
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 99.44
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 99.4
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 99.33
1z6u_A150 NP95-like ring finger protein isoform B; structura 99.32
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 99.21
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 99.18
2ecw_A85 Tripartite motif-containing protein 30; metal bind 99.14
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 99.14
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 99.13
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 99.12
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 99.11
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 99.1
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 99.09
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 99.08
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 99.08
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 99.08
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 99.06
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 99.05
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 99.04
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 99.0
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 98.94
2ysl_A73 Tripartite motif-containing protein 31; ring-type 98.93
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 98.87
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 98.81
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 98.76
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 98.76
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 98.75
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 98.75
2ysj_A63 Tripartite motif-containing protein 31; ring-type 98.66
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 98.62
2ect_A78 Ring finger protein 126; metal binding protein, st 98.61
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 98.53
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 98.45
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 98.42
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 98.39
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 98.39
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 98.36
2ecm_A55 Ring finger and CHY zinc finger domain- containing 98.32
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 98.3
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 98.29
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 98.23
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 98.18
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 98.14
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 98.11
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 98.1
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 98.08
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 98.03
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 98.03
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 97.93
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 97.74
3t6p_A345 Baculoviral IAP repeat-containing protein 2; ring, 97.62
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 97.62
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 97.55
3dpl_R106 Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST 97.4
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 97.37
4a0k_B117 E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi 97.02
2kkx_A102 Uncharacterized protein ECS2156; methods developme 97.02
2d8s_A80 Cellular modulator of immune recognition; C-MIR, m 96.93
2ea5_A68 Cell growth regulator with ring finger domain prot 96.91
3i2d_A371 E3 SUMO-protein ligase SIZ1; signal transduction, 96.82
4fo9_A360 E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom 96.39
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 95.6
3k1l_B381 Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A 94.73
1vyx_A60 ORF K3, K3RING; zinc-binding protein, ring domain, 90.84
3nw0_A238 Non-structural maintenance of chromosomes element 81.12
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Back     alignment and structure
Probab=100.00  E-value=5.1e-63  Score=504.72  Aligned_cols=234  Identities=31%  Similarity=0.454  Sum_probs=215.3

Q ss_pred             eeccccchhccC-CChhhhhhhhHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHhcC
Q psy1723           5 RLTVTTTLEFHV-GHESYRKSDSGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVG   83 (246)
Q Consensus         5 ~~~~~~~~~w~~-l~~~~r~~~~~~l~~~~~~a~~~~~l~~eti~~l~~lt~~~~~~F~~~eiv~Rla~mLn~~L~~LvG   83 (246)
                      +.+++|.+.|.. ..+++|+++++.+++++++||||++||++||+||++||+++|++|++||||+|||+||||||.+|||
T Consensus       709 Q~e~~~~~~~~~~~~ee~~~~~~~~l~~~er~a~s~~~La~etv~ml~~~T~~i~~~F~~peiv~RlA~MLnynL~~LvG  788 (968)
T 3m62_A          709 QNELDNRARGAPPTREEEDKELQTRLASASRQAKSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLASMLNYNLESLVG  788 (968)
T ss_dssp             HHHHHTSSCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHhhhhccCCccchhHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHhchhhccHHHHHHHHHHHHHHHHHhcC
Confidence            345677777765 4567889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCccccCCCCCCCCCccccchhh-----HHHHhccCCcchhhhhhc-------Ccchh-----hHhhh-c--CCCch
Q psy1723          84 PKMRNFKTSRRSPGKQEGVGSIPAER-----KLKLNISTSPYYYFSLSL-------PPSLL-----YLARI-G--GASLI  143 (246)
Q Consensus        84 pk~~~LkVkn~e~~~~~~y~F~Pk~l-----~iy~nl~~~~~~~F~~av-------~~~~F-----~l~~i-~--~~~~i  143 (246)
                      |||++|||+||++     |+|+||+|     +||+||++++.  |+.||       ++++|     ||.|. +  .+..+
T Consensus       789 Pk~~~LKVknpek-----Y~F~Pk~lL~~i~~IYlnL~~~~~--F~~aVa~DgRSy~~elF~~a~~il~~~~~l~~~~~i  861 (968)
T 3m62_A          789 PKCGELKVKDPQS-----YSFNPKDLLKALTTVYINLSEQSE--FISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFI  861 (968)
T ss_dssp             HHHHTCCCSCGGG-----GTCCHHHHHHHHHHHHHHTTTCHH--HHHHHHHCTTTCCHHHHHHHHHHHTTSTTSSCHHHH
T ss_pred             ccccccccCCHhh-----cCCCHHHHHHHHHHHHhhccCChH--HHHHHHhcCCCCCHHHHHHHHHHHHHhhcCCCHHHH
Confidence            9999999999999     99999999     99999998888  99999       78999     66543 2  35678


Q ss_pred             hHHHHHHHHHHHHHhhccchhhhhcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCC
Q psy1723         144 PDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQV  223 (246)
Q Consensus       144 ~~~~~l~~~v~~~~~~~~~~e~~~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~l  223 (246)
                      ++|.+|++++++.+++.+++|+++.++|++|+||||+++|+|||++|+||+||||++|++||.++++||+||+||+.++|
T Consensus       862 ~~~~~l~~~~~~~~~~~~~~e~~~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~l  941 (968)
T 3m62_A          862 EKLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDV  941 (968)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccc
Confidence            99999999999999888888889999999999999999999999999866899999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhhhhhc
Q psy1723         224 IPNTQLQTQIQDWIRQCRQKSL  245 (246)
Q Consensus       224 ipn~~Lk~~Ie~w~~~~~~~~~  245 (246)
                      +||.+||++|++|+.+++++|+
T Consensus       942 iPN~~Lk~~I~~w~~~~~~~~~  963 (968)
T 3m62_A          942 TPNEELRQKILCFKKQKKEEAK  963 (968)
T ss_dssp             EECHHHHHHHHHHHHHHHTTC-
T ss_pred             cccHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999887663
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Back     alignment and structure
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Back     alignment and structure
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Back     alignment and structure
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Back     alignment and structure
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A Back     alignment and structure
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Back     alignment and structure
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Back     alignment and structure
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 246
d1wgma_98 g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu 3e-16
d1t1ha_78 g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre 3e-11
d2c2la280 g.44.1.2 (A:225-304) STIP1 homology and U box-cont 8e-06
d2baya156 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { 0.003
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (170), Expect = 3e-16
 Identities = 54/84 (64%), Positives = 70/84 (83%)

Query: 161 QSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTM 220
           Q +E   A A DE+LDPIM+T+M +PV LPSSR T+D+STIARHLLSDQTDPFNRSPLTM
Sbjct: 10  QQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69

Query: 221 EQVIPNTQLQTQIQDWIRQCRQKS 244
           +Q+ PNT+L+ +IQ W+ + +Q+S
Sbjct: 70  DQIRPNTELKEKIQRWLAERKQQS 93
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query246
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 99.93
d2c2la280 STIP1 homology and U box-containing protein 1, STU 99.87
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 99.86
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 99.65
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 99.33
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 99.27
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 99.2
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.93
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 98.46
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 98.44
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 98.29
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 98.24
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 97.63
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 97.57
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 97.53
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 97.13
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 92.09
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.3e-27  Score=180.92  Aligned_cols=83  Identities=64%  Similarity=0.999  Sum_probs=77.4

Q ss_pred             chhhhhcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHhh
Q psy1723         162 SDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCR  241 (246)
Q Consensus       162 ~~e~~~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~~Lk~~Ie~w~~~~~  241 (246)
                      .+++.+.++|++|+||||++||+|||++|+|||+|||++|.+||..+++||+||++|+.++|+||.+||++|++|+.+++
T Consensus        11 ~~~~~~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~   90 (98)
T d1wgma_          11 QEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK   90 (98)
T ss_dssp             SCCCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred             hhHhhhcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccchhhcchHHHHHHHHHHHHHHH
Confidence            34566889999999999999999999999988899999999999999999999999999999999999999999999887


Q ss_pred             hhh
Q psy1723         242 QKS  244 (246)
Q Consensus       242 ~~~  244 (246)
                      .+.
T Consensus        91 ~~~   93 (98)
T d1wgma_          91 QQS   93 (98)
T ss_dssp             TCS
T ss_pred             Hhc
Confidence            654
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure