Psyllid ID: psy17247

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40-
Protein Sequence
MSKTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV
Secondary Structure (PSIPRED)
cccEEEEEEccccEEEEEEEEccEEEEEEcccccEEccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccccEEEEEEEcccEEEEEccccccccccEc
Coil and Loop (DISEMBL)
MSKTVFGLylgnssasigicrdgkveilaneagdrvtpavv
Flexible Loop (DISEMBL)
MSKTVFGlylgnssasigiCRDGKVEILaneagdrvtpavv
Low Complexity Region (SEG)
MSKTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV
Disordered region (IsUnstruct)
****VFGLYLGNSSASIGICRDGKVEILA************
Disordered Region (DISOPRED)
**KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPA**
Disordered Region (DISEMBL)
MSKTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV
Disordered Region (DISPRO)
*SKTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSKTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	41	2.2.26 [Sep-21-2011]
Q6AYB4	509	Heat shock 70 kDa protein	yes	N/A	0.878	0.070	0.527	3e-05
P87142	566	Heat shock protein 70 hom	yes	N/A	0.951	0.068	0.487	4e-05
Q99M31	509	Heat shock 70 kDa protein	yes	N/A	0.853	0.068	0.514	4e-05
Q2YDD0	509	Heat shock 70 kDa protein	yes	N/A	0.853	0.068	0.514	5e-05
Q6BZH1	683	78 kDa glucose-regulated	yes	N/A	0.926	0.055	0.5	9e-05
Q42434	668	Luminal-binding protein O	N/A	N/A	0.926	0.056	0.5	0.0001
A2VD93	507	Heat shock 70 kDa protein	N/A	N/A	0.878	0.071	0.5	0.0001
A5D8N7	509	Heat shock 70 kDa protein	N/A	N/A	0.878	0.070	0.5	0.0001
Q5FVX7	508	Heat shock 70 kDa protein	yes	N/A	0.878	0.070	0.5	0.0001
Q0VDF9	509	Heat shock 70 kDa protein	yes	N/A	0.853	0.068	0.542	0.0001

>sp|Q6AYB4|HSP7E_RAT Heat shock 70 kDa protein 14 OS=Rattus norvegicus GN=Hspa14 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 30/36 (83%)

Query: 6  FGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
           G++LG +SA + + +DG+ +++AN+AGDRVTPAVV
Sbjct: 4  IGVHLGCTSACVAVYKDGRADVVANDAGDRVTPAVV 39

Component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, binds to the nascent polypeptide chain, while DNAJC2 stimulates its ATPase activity.
Rattus norvegicus (taxid: 10116)

>sp|P87142|YDMC_SCHPO Heat shock protein 70 homolog C57A7.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC57A7.12 PE=1 SV=3

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 3  KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          KTV G+  GN ++SI   RDGK ++LANE G+R  P+++
Sbjct: 24 KTVIGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSIL 62

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q99M31|HSP7E_MOUSE Heat shock 70 kDa protein 14 OS=Mus musculus GN=Hspa14 PE=2 SV=2

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 30/35 (85%)

Query: 7  GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          G++LG +SA + + +DG+ +++AN+AGDRVTPA+V
Sbjct: 5  GVHLGCTSACVAVYKDGRADVVANDAGDRVTPAIV 39

Component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, binds to the nascent polypeptide chain, while DNAJC2 stimulates its ATPase activity.

Mus musculus (taxid: 10090)

>sp|Q2YDD0|HSP7E_BOVIN Heat shock 70 kDa protein 14 OS=Bos taurus GN=HSPA14 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 30/35 (85%)

Query: 7  GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          G++LG +SA + + +DG+ +++AN+AGDRVTPA+V
Sbjct: 5  GVHLGCTSACVAVYKDGRADVVANDAGDRVTPAIV 39

Component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, binds to the nascent polypeptide chain, while DNAJC2 stimulates its ATPase activity.

Bos taurus (taxid: 9913)

>sp|Q6BZH1|GRP78_DEBHA 78 kDa glucose-regulated protein homolog OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=KAR2 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 30/38 (78%)

Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          TV G+ LG + + +G+ ++GKVEILAN+ G+R+TP+ V
Sbjct: 50 TVIGIDLGTTYSCVGVMKNGKVEILANDQGNRITPSYV 87

Probably plays a role in facilitating the assembly of multimeric protein complexes inside the ER.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q42434|BIP_SPIOL Luminal-binding protein OS=Spinacia oleracea GN=HSC70 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 30/38 (78%)

Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          TV G+ LG + + +G+ +DGKVEI+AN+ G+R+TP+ V
Sbjct: 37 TVIGIDLGTTYSCVGVYKDGKVEIIANDQGNRITPSWV 74

Probably plays a role in facilitating the assembly of multimeric protein complexes inside the ER.

Spinacia oleracea (taxid: 3562)

>sp|A2VD93|HS7EB_XENLA Heat shock 70 kDa protein 14-B OS=Xenopus laevis GN=hspa14-b PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 29/36 (80%)

Query: 6  FGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
           G++LG + A + + +DG+ +++AN+AGDRVTPAVV
Sbjct: 4  IGVHLGCTCACVAVFKDGRADVVANDAGDRVTPAVV 39

Component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state.

Xenopus laevis (taxid: 8355)

>sp|A5D8N7|HS7EA_XENLA Heat shock 70 kDa protein 14-A OS=Xenopus laevis GN=hspa14-a PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 29/36 (80%)

Query: 6  FGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
           G++LG + A + + +DG+ +++AN+AGDRVTPAVV
Sbjct: 4  IGVHLGCTCACVAVYKDGRADVVANDAGDRVTPAVV 39

Component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state.

Xenopus laevis (taxid: 8355)

>sp|Q5FVX7|HSP7E_XENTR Heat shock 70 kDa protein 14 OS=Xenopus tropicalis GN=hspa14 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 29/36 (80%)

Query: 6  FGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
           G++LG + A + + +DG+ +++AN+AGDRVTPAVV
Sbjct: 4  IGVHLGCTCACVAVYKDGRADVVANDAGDRVTPAVV 39

Component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state.

Xenopus tropicalis (taxid: 8364)

>sp|Q0VDF9|HSP7E_HUMAN Heat shock 70 kDa protein 14 OS=Homo sapiens GN=HSPA14 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 29/35 (82%)

Query: 7  GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          G++LG +SA + + +DG+  ++AN+AGDRVTPAVV
Sbjct: 5  GVHLGCTSACVAVYKDGRAGVVANDAGDRVTPAVV 39

Component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, binds to the nascent polypeptide chain, while DNAJC2 stimulates its ATPase activity.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	41
328713346	497	PREDICTED: heat shock 70 kDa protein 14-	1.0	0.082	0.651	3e-06
321464824	501	hypothetical protein DAPPUDRAFT_306599 [	0.878	0.071	0.5	9e-05
410918436	506	PREDICTED: heat shock 70 kDa protein 14-	0.926	0.075	0.552	0.0001
242002186	375	HSP70, putative [Ixodes scapularis] gi|2	0.878	0.096	0.583	0.0002
213403980	546	heat shock protein [Schizosaccharomyces	0.926	0.069	0.578	0.0003
196015813	510	hypothetical protein TRIADDRAFT_61844 [T	0.926	0.074	0.5	0.0004
391325523	500	PREDICTED: heat shock 70 kDa protein 14-	0.951	0.078	0.487	0.0007

>gi|328713346|ref|XP_001945768.2| PREDICTED: heat shock 70 kDa protein 14-like [Acyrthosiphon pisum]

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 39/43 (90%), Gaps = 2/43 (4%)

Query: 1  MSKT-VFGLYLGNSSASIGICRD-GKVEILANEAGDRVTPAVV 41
          MS++ VFG+++GNS+ASI I ++ GKV++LANEAGDR+TPAVV
Sbjct: 1  MSRSIVFGIHVGNSTASIAISKEEGKVDVLANEAGDRITPAVV 43

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321464824|gb|EFX75829.1| hypothetical protein DAPPUDRAFT_306599 [Daphnia pulex]

 Score = 50.8 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 32/36 (88%)

Query: 6  FGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          FGL++G +++ + +C+DGK +++AN+AGDRVTP++V
Sbjct: 5  FGLHVGRTNSCVSVCKDGKSDVVANDAGDRVTPSIV 40

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|410918436|ref|XP_003972691.1| PREDICTED: heat shock 70 kDa protein 14-like [Takifugu rubripes]

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 31/38 (81%)

Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          T  G++LG SSA + + +DG+ E++AN+AGDR+TPAVV
Sbjct: 2  TAIGVHLGCSSACVAVFKDGRAEVVANDAGDRITPAVV 39

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|242002186|ref|XP_002435736.1| HSP70, putative [Ixodes scapularis] gi|215499072|gb|EEC08566.1| HSP70, putative [Ixodes scapularis]

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 28/36 (77%)

Query: 6  FGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          FGLY GN++  + I +DG  E +AN++GDRVTPAVV
Sbjct: 5  FGLYFGNTNLCLAIHKDGNTEAVANDSGDRVTPAVV 40

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|213403980|ref|XP_002172762.1| heat shock protein [Schizosaccharomyces japonicus yFS275] gi|212000809|gb|EEB06469.1| heat shock protein [Schizosaccharomyces japonicus yFS275]

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 26/38 (68%)

Query: 3  KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAV 40
          KTV GL  GN ++SI   +DGK E LANE GDR  PA+
Sbjct: 8  KTVIGLSFGNQNSSISFTKDGKTECLANEEGDRQIPAI 45

Source: Schizosaccharomyces japonicus yFS275

Species: Schizosaccharomyces japonicus

Genus: Schizosaccharomyces

Family: Schizosaccharomycetaceae

Order: Schizosaccharomycetales

Class: Schizosaccharomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|196015813|ref|XP_002117762.1| hypothetical protein TRIADDRAFT_61844 [Trichoplax adhaerens] gi|190579647|gb|EDV19738.1| hypothetical protein TRIADDRAFT_61844 [Trichoplax adhaerens]

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 28/38 (73%)

Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          T FGL+ G ++ ++ +C+DG+ EILAN  G R TPAV+
Sbjct: 2  TAFGLHFGGTNLTLAVCKDGQTEILANNDGHRSTPAVI 39

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|391325523|ref|XP_003737282.1| PREDICTED: heat shock 70 kDa protein 14-like [Metaseiulus occidentalis]

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 30/39 (76%)

Query: 3  KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          +T FG+  GN+S  I + +DGK +++AN++G+R TPAVV
Sbjct: 5  RTCFGISFGNTSLCIAVQKDGKTDVVANDSGERTTPAVV 43

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	41
UNIPROTKB|B0YIZ1	143	HSPA14 "Heat shock 70kDa prote	0.853	0.244	0.542	3.4e-06
UNIPROTKB|E2RHI0	509	HSPA14 "Uncharacterized protei	0.853	0.068	0.542	1.4e-05
UNIPROTKB|F1RTY7	509	LOC100627437 "Uncharacterized	0.853	0.068	0.542	1.4e-05
RGD|1303296	509	Hspa14 "heat shock protein 14"	0.853	0.068	0.542	1.4e-05
UNIPROTKB|Q2YDD0	509	HSPA14 "Heat shock 70 kDa prot	0.853	0.068	0.514	1.8e-05
MGI|MGI:1354164	509	Hspa14 "heat shock protein 14"	0.853	0.068	0.514	1.8e-05
UNIPROTKB|Q0VDF9	509	HSPA14 "Heat shock 70 kDa prot	0.853	0.068	0.542	3.7e-05
UNIPROTKB|Q4R6J2	509	HSPA14 "Heat shock 70 kDa prot	0.853	0.068	0.542	3.7e-05
UNIPROTKB|Q5RE21	509	HSPA14 "Heat shock 70 kDa prot	0.853	0.068	0.542	3.7e-05
UNIPROTKB|A2VD93	507	hspa14-b "Heat shock 70 kDa pr	0.853	0.069	0.514	4.7e-05

UNIPROTKB|B0YIZ1 HSPA14 "Heat shock 70kDa protein 14 isoform 1 variant 3" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 19/35 (54%), Positives = 29/35 (82%)

Query:     7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
             G++LG +SA + + +DG+  ++AN+AGDRVTPAVV
Sbjct:     5 GVHLGCTSACVAVYKDGRAGVVANDAGDRVTPAVV 39

GO:0005524 "ATP binding" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

UNIPROTKB|E2RHI0 HSPA14 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 111 (44.1 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 19/35 (54%), Positives = 30/35 (85%)

Query:     7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
             G++LG +SA + + +DG+ +++AN+AGDRVTPAVV
Sbjct:     5 GVHLGCTSACVAVYKDGRADVVANDAGDRVTPAVV 39

GO:0005840 "ribosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1RTY7 LOC100627437 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 111 (44.1 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 19/35 (54%), Positives = 30/35 (85%)

Query:     7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
             G++LG +SA + + +DG+ +++AN+AGDRVTPAVV
Sbjct:     5 GVHLGCTSACVAVYKDGRADVVANDAGDRVTPAVV 39

GO:0005524 "ATP binding" evidence=IEA

RGD|1303296 Hspa14 "heat shock protein 14" [Rattus norvegicus (taxid:10116)]

 Score = 111 (44.1 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 19/35 (54%), Positives = 30/35 (85%)

Query:     7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
             G++LG +SA + + +DG+ +++AN+AGDRVTPAVV
Sbjct:     5 GVHLGCTSACVAVYKDGRADVVANDAGDRVTPAVV 39

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0005840 "ribosome" evidence=ISO;ISS

UNIPROTKB|Q2YDD0 HSPA14 "Heat shock 70 kDa protein 14" [Bos taurus (taxid:9913)]

 Score = 110 (43.8 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 18/35 (51%), Positives = 30/35 (85%)

Query:     7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
             G++LG +SA + + +DG+ +++AN+AGDRVTPA+V
Sbjct:     5 GVHLGCTSACVAVYKDGRADVVANDAGDRVTPAIV 39

GO:0005829 "cytosol" evidence=ISS

GO:0005840 "ribosome" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:1354164 Hspa14 "heat shock protein 14" [Mus musculus (taxid:10090)]

 Score = 110 (43.8 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 18/35 (51%), Positives = 30/35 (85%)

Query:     7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
             G++LG +SA + + +DG+ +++AN+AGDRVTPA+V
Sbjct:     5 GVHLGCTSACVAVYKDGRADVVANDAGDRVTPAIV 39

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0VDF9 HSPA14 "Heat shock 70 kDa protein 14" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 19/35 (54%), Positives = 29/35 (82%)

Query:     7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
             G++LG +SA + + +DG+  ++AN+AGDRVTPAVV
Sbjct:     5 GVHLGCTSACVAVYKDGRAGVVANDAGDRVTPAVV 39

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0005840 "ribosome" evidence=IDA

GO:0051083 "'de novo' cotranslational protein folding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q4R6J2 HSPA14 "Heat shock 70 kDa protein 14" [Macaca fascicularis (taxid:9541)]

 Score = 107 (42.7 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 19/35 (54%), Positives = 29/35 (82%)

Query:     7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
             G++LG +SA + + +DG+  ++AN+AGDRVTPAVV
Sbjct:     5 GVHLGCTSACVAVYKDGRAGVVANDAGDRVTPAVV 39

GO:0005829 "cytosol" evidence=ISS

GO:0005840 "ribosome" evidence=ISS

UNIPROTKB|Q5RE21 HSPA14 "Heat shock 70 kDa protein 14" [Pongo abelii (taxid:9601)]

 Score = 107 (42.7 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 19/35 (54%), Positives = 29/35 (82%)

Query:     7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
             G++LG +SA + + +DG+  ++AN+AGDRVTPAVV
Sbjct:     5 GVHLGCTSACVAVYKDGRAGVVANDAGDRVTPAVV 39

GO:0005829 "cytosol" evidence=ISS

GO:0005840 "ribosome" evidence=ISS

UNIPROTKB|A2VD93 hspa14-b "Heat shock 70 kDa protein 14-B" [Xenopus laevis (taxid:8355)]

 Score = 106 (42.4 bits), Expect = 4.7e-05, P = 4.7e-05
 Identities = 18/35 (51%), Positives = 29/35 (82%)

Query:     7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
             G++LG + A + + +DG+ +++AN+AGDRVTPAVV
Sbjct:     5 GVHLGCTCACVAVFKDGRADVVANDAGDRVTPAVV 39

GO:0005829 "cytosol" evidence=ISS

GO:0005840 "ribosome" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RE21	HSP7E_PONAB	No assigned EC number	0.5277	0.8780	0.0707	yes	N/A
Q2YDD0	HSP7E_BOVIN	No assigned EC number	0.5142	0.8536	0.0687	yes	N/A
Q0VDF9	HSP7E_HUMAN	No assigned EC number	0.5428	0.8536	0.0687	yes	N/A
Q6AYB4	HSP7E_RAT	No assigned EC number	0.5277	0.8780	0.0707	yes	N/A
Q99M31	HSP7E_MOUSE	No assigned EC number	0.5142	0.8536	0.0687	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	41
cd10238	375	cd10238, HSPA14-like_NBD, Nucleotide-binding domai	6e-13
cd10241	374	cd10241, HSPA5-like_NBD, Nucleotide-binding domain	1e-08
pfam00012	598	pfam00012, HSP70, Hsp70 protein	2e-07
cd10228	381	cd10228, HSPA4_like_NDB, Nucleotide-binding domain	3e-07
cd10232	386	cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma	6e-07
cd10233	376	cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding	1e-05
cd11739	383	cd11739, HSPH1_NBD, Nucleotide-binding domain of H	3e-05
cd11738	383	cd11738, HSPA4L_NBD, Nucleotide-binding domain of	1e-04
PTZ00009	653	PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro	2e-04
cd11737	383	cd11737, HSPA4_NBD, Nucleotide-binding domain of H	3e-04
cd11734	373	cd11734, Ssq1_like_NBD, Nucleotide-binding domain	5e-04
cd11732	377	cd11732, HSP105-110_like_NBD, Nucleotide-binding d	5e-04
cd10170	369	cd10170, HSP70_NBD, Nucleotide-binding domain of t	6e-04
COG0443	579	COG0443, DnaK, Molecular chaperone [Posttranslatio	0.003
cd10234	376	cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d	0.003

>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins

 Score = 59.7 bits (145), Expect = 6e-13
 Identities = 19/38 (50%), Positives = 30/38 (78%)

Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
             G++ GN+SA + + +DG+ +++AN+AGDRVTPAVV
Sbjct: 1  AAIGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVV 38

Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375

>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins

 Score = 47.3 bits (113), Expect = 1e-08
 Identities = 17/38 (44%), Positives = 30/38 (78%)

Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          TV G+ LG + + +G+ ++G+VEI+AN+ G+R+TP+ V
Sbjct: 2  TVIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYV 39

This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374

>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein

 Score = 43.8 bits (104), Expect = 2e-07
 Identities = 14/37 (37%), Positives = 25/37 (67%)

Query: 5  VFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          V G+ LG +++ + +   G  E++AN+ G+R TP+VV
Sbjct: 1  VIGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVV 37

Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598

>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins

 Score = 43.3 bits (103), Expect = 3e-07
 Identities = 13/38 (34%), Positives = 26/38 (68%)

Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          +V G+  GN ++ + + R G ++++ANE  +R TP++V
Sbjct: 1  SVVGIDFGNLNSVVAVARKGGIDVVANEYSNRETPSLV 38

This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381

>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins

 Score = 42.8 bits (101), Expect = 6e-07
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          TV G+  GN+ +SI     GK +++ANE G+R  P+ +
Sbjct: 1  TVIGINFGNTYSSIACINQGKADVIANEDGERQIPSAI 38

Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386

>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins

 Score = 38.9 bits (91), Expect = 1e-05
 Identities = 16/35 (45%), Positives = 26/35 (74%)

Query: 7  GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 3  GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 37

This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376

>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1

 Score = 38.0 bits (88), Expect = 3e-05
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          +V G  +G  S  I + R G +E +ANE  DR TP+V+
Sbjct: 1  SVVGFDVGFQSCYIAVARAGGIETVANEFSDRCTPSVI 38

Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383

>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L

 Score = 36.2 bits (83), Expect = 1e-04
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          +V G+ LG  +  I + R G +E +ANE  DR TPA +
Sbjct: 1  SVVGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACI 38

Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383

>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional

 Score = 35.2 bits (81), Expect = 2e-04
 Identities = 14/35 (40%), Positives = 25/35 (71%)

Query: 7  GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          G+ LG + + +G+ ++  VEI+AN+ G+R TP+ V
Sbjct: 8  GIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYV 42

Length = 653

>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4

 Score = 35.0 bits (80), Expect = 3e-04
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          +V G+ LG  S  + + R G +E +ANE  DR TPA +
Sbjct: 1  SVVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACI 38

Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383

>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins

 Score = 34.4 bits (79), Expect = 5e-04
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 2  SKTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
            T+ G+ LG +++ + +       I+ N  G R TP++V
Sbjct: 1  RSTIIGIDLGTTNSCVAVIDKTTPVIIENAEGKRTTPSIV 40

Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373

>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins

 Score = 34.2 bits (78), Expect = 5e-04
 Identities = 15/36 (41%), Positives = 26/36 (72%)

Query: 6  FGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          FGL LGN+++ + + R+  ++I+ NE  +R TP+VV
Sbjct: 1  FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVV 36

This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377

>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family

 Score = 34.1 bits (79), Expect = 6e-04
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 6  FGLYLGNSSASIGICRD-GKVEILANEAGDRVTPAVV 41
           G+ LG +++++    + GK EI+ N  G R TP+VV
Sbjct: 1  IGIDLGTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVV 37

HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369

>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 32.3 bits (74), Expect = 0.003
 Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 2  SKTVFGLYLGNSSASIGICRDG-KVEILANEAGDRVTPAVV 41
          +K   G+ LG +++ + + R G   +++ N  G+R+TP+VV
Sbjct: 4  AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVV 44

Length = 579

>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins

 Score = 32.2 bits (74), Expect = 0.003
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 1  MSKTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          M K + G+ LG +++ + +   G+  ++ N  G R TP+VV
Sbjct: 1  MGK-IIGIDLGTTNSCVAVMEGGEPTVIPNAEGSRTTPSVV 40

This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	41
KOG0100|consensus	663		99.69
PRK11678	450	putative chaperone; Provisional	99.61
PRK01433	595	hscA chaperone protein HscA; Provisional	99.56
PRK00290	627	dnaK molecular chaperone DnaK; Provisional	99.55
PTZ00186	657	heat shock 70 kDa precursor protein; Provisional	99.54
PRK13410	668	molecular chaperone DnaK; Provisional	99.54
PRK13411	653	molecular chaperone DnaK; Provisional	99.54
PTZ00400	663	DnaK-type molecular chaperone; Provisional	99.53
PLN03184	673	chloroplast Hsp70; Provisional	99.53
CHL00094	621	dnaK heat shock protein 70	99.53
PRK05183	616	hscA chaperone protein HscA; Provisional	99.52
TIGR01991	599	HscA Fe-S protein assembly chaperone HscA. The Hea	99.51
COG0443	579	DnaK Molecular chaperone [Posttranslational modifi	99.51
PTZ00009	653	heat shock 70 kDa protein; Provisional	99.51
TIGR02350	595	prok_dnaK chaperone protein DnaK. Members of this	99.49
PF00012	602	HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho	99.43
KOG0101|consensus	620		99.35
KOG0102|consensus	640		99.29
KOG0103|consensus	727		98.71
TIGR00904	333	mreB cell shape determining protein, MreB/Mrl fami	97.83
PRK13928	336	rod shape-determining protein Mbl; Provisional	97.77
PRK13929	335	rod-share determining protein MreBH; Provisional	97.7
PRK13930	335	rod shape-determining protein MreB; Provisional	97.46
PRK13927	334	rod shape-determining protein MreB; Provisional	97.35
PRK10939	520	autoinducer-2 (AI-2) kinase; Provisional	96.99
PRK04123	548	ribulokinase; Provisional	96.92
COG1070	502	XylB Sugar (pentulose and hexulose) kinases [Carbo	96.76
PRK00047	498	glpK glycerol kinase; Provisional	96.47
PF00370	245	FGGY_N: FGGY family of carbohydrate kinases, N-ter	96.42
PRK10331	470	L-fuculokinase; Provisional	96.37
PTZ00294	504	glycerol kinase-like protein; Provisional	96.27
KOG0104|consensus	902		96.2
PF06723	326	MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba	96.04
TIGR02628	465	fuculo_kin_coli L-fuculokinase. Members of this fa	95.87
PRK15027	484	xylulokinase; Provisional	95.84
cd00529	154	RuvC_resolvase Holliday junction resolvases (HJRs)	95.78
COG1077	342	MreB Actin-like ATPase involved in cell morphogene	95.73
PLN00130	213	succinate dehydrogenase (SDH3); Provisional	95.66
TIGR00241	248	CoA_E_activ CoA-substrate-specific enzyme activase	95.65
TIGR01315	541	5C_CHO_kinase FGGY-family pentulose kinase. This m	95.62
PF14450	120	FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B	95.53
TIGR01311	493	glycerol_kin glycerol kinase. This model describes	95.46
smart00732	99	YqgFc Likely ribonuclease with RNase H fold. YqgF	95.42
TIGR01314	505	gntK_FGGY gluconate kinase, FGGY type. Gluconate i	95.38
TIGR01234	536	L-ribulokinase L-ribulokinase. This enzyme catalyz	95.21
PLN02295	512	glycerol kinase	95.18
PRK13318	258	pantothenate kinase; Reviewed	94.31
PRK13321	256	pantothenate kinase; Reviewed	94.27
PF02075	149	RuvC: Crossover junction endodeoxyribonuclease Ruv	94.0
PRK00109	138	Holliday junction resolvase-like protein; Reviewed	93.84
PF03652	135	UPF0081: Uncharacterised protein family (UPF0081);	93.75
PRK13326	262	pantothenate kinase; Reviewed	93.47
PLN02669	556	xylulokinase	93.2
PRK00039	164	ruvC Holliday junction resolvase; Reviewed	92.95
smart00842	187	FtsA Cell division protein FtsA. FtsA is essential	92.33
TIGR01312	481	XylB D-xylulose kinase. D-xylulose kinase (XylB) g	92.28
COG1069	544	AraB Ribulose kinase [Energy production and conver	92.26
TIGR02259	432	benz_CoA_red_A benzoyl-CoA reductase, bcr type, su	92.13
PRK00292	316	glk glucokinase; Provisional	92.12
PRK13320	244	pantothenate kinase; Reviewed	91.96
TIGR03192	293	benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s	91.79
PF01548	144	DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 T	91.62
COG1548	330	Predicted transcriptional regulator/sugar kinase [	91.26
COG1521	251	Pantothenate kinase type III (Bvg accessory factor	91.06
PRK13331	251	pantothenate kinase; Reviewed	90.89
PRK09472	420	ftsA cell division protein FtsA; Reviewed	90.78
COG0816	141	Predicted endonuclease involved in recombination (	90.64
PF00349	206	Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexo	90.34
PRK13317	277	pantothenate kinase; Provisional	90.3
TIGR02627	454	rhamnulo_kin rhamnulokinase. This model describes	89.65
PF06277	473	EutA: Ethanolamine utilisation protein EutA; Inter	89.46
PRK10719	475	eutA reactivating factor for ethanolamine ammonia	89.39
TIGR02261	262	benz_CoA_red_D benzoyl-CoA reductase, bcr type, su	89.13
COG4820	277	EutJ Ethanolamine utilization protein, possible ch	88.95
PF04848	143	Pox_A22: Poxvirus A22 protein; InterPro: IPR006932	88.69
PRK13324	258	pantothenate kinase; Reviewed	88.34
TIGR00671	243	baf pantothenate kinase, type III. This model desc	88.31
KOG2517|consensus	516		88.27
TIGR01174	371	ftsA cell division protein FtsA. This bacterial ce	87.6
PF13941	457	MutL: MutL protein	86.98
PRK09698	302	D-allose kinase; Provisional	86.84
TIGR00250	130	RNAse_H_YqgF RNAse H-fold protein YqgF. This prote	86.59
PF07066	159	DUF3882: Lactococcus phage M3 protein; InterPro: I	86.54
COG4020	332	Uncharacterized protein conserved in archaea [Func	86.51
COG0554	499	GlpK Glycerol kinase [Energy production and conver	86.08
smart00268	373	ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki	85.9
TIGR01865	805	cas_Csn1 CRISPR-associated protein, Csn1 family. C	85.77
PLN02914	490	hexokinase	85.68
PRK15080	267	ethanolamine utilization protein EutJ; Provisional	85.68
PF03309	206	Pan_kinase: Type III pantothenate kinase; InterPro	85.67
TIGR03286	404	methan_mark_15 putative methanogenesis marker prot	85.46
PLN02362	509	hexokinase	85.24
PRK14101	638	bifunctional glucokinase/RpiR family transcription	84.21
TIGR01175	348	pilM type IV pilus assembly protein PilM. This pro	84.14
COG1924	396	Activator of 2-hydroxyglutaryl-CoA dehydratase (HS	84.13
PRK12408	336	glucokinase; Provisional	84.04
COG0849	418	ftsA Cell division ATPase FtsA [Cell division and	83.74
PF01385	227	OrfB_IS605: Probable transposase; InterPro: IPR001	83.09
COG2410	178	Predicted nuclease (RNAse H fold) [General functio	82.34
PRK13311	256	N-acetyl-D-glucosamine kinase; Provisional	82.06
PTZ00288	405	glucokinase 1; Provisional	81.15
PLN02405	497	hexokinase	81.02
cd00012	371	ACTIN Actin; An ubiquitous protein involved in the	80.51
PLN02596	490	hexokinase-like	80.28

>KOG0100|consensus

Probab=99.69  E-value=3.6e-17  Score=100.47  Aligned_cols=39  Identities=44%  Similarity=0.883  Sum_probs=37.5

Q ss_pred             ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      ..+||||||||||||+++++|+++||+|++|+|.+||+|
T Consensus        36 gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyV   74 (663)
T KOG0100|consen   36 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYV   74 (663)
T ss_pred             ceEEEEecCCceeeEEEEeCCeEEEEecCCCCcccccee
Confidence            468999999999999999999999999999999999997

>PRK11678 putative chaperone; Provisional

Probab=99.61  E-value=7.1e-16  Score=93.42  Aligned_cols=38  Identities=26%  Similarity=0.506  Sum_probs=35.8

Q ss_pred             eEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          4 TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      ++||||||||||+||++++++++++++++|++++||+|
T Consensus         1 ~~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v   38 (450)
T PRK11678          1 MFIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTL   38 (450)
T ss_pred             CeEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeee
Confidence            36999999999999999999999999999999999986

>PRK01433 hscA chaperone protein HscA; Provisional

Probab=99.56  E-value=6.4e-15  Score=91.44  Aligned_cols=38  Identities=18%  Similarity=0.452  Sum_probs=36.3

Q ss_pred             eEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          4 TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      .+|||||||||||||++.++++++++|++|++.+||+|
T Consensus        20 ~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V   57 (595)
T PRK01433         20 IAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTI   57 (595)
T ss_pred             eEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEE
Confidence            48999999999999999999999999999999999986

>PRK00290 dnaK molecular chaperone DnaK; Provisional

Probab=99.55  E-value=7.2e-15  Score=91.01  Aligned_cols=39  Identities=28%  Similarity=0.655  Sum_probs=36.9

Q ss_pred             ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      +.++|||||||||+||++++|++++++|++|+|.+||+|
T Consensus         2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V   40 (627)
T PRK00290          2 GKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVV   40 (627)
T ss_pred             CcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEE
Confidence            468999999999999999999999999999999999986

>PTZ00186 heat shock 70 kDa precursor protein; Provisional

Probab=99.54  E-value=9.7e-15  Score=91.48  Aligned_cols=40  Identities=33%  Similarity=0.522  Sum_probs=37.4

Q ss_pred             CceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          2 SKTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         2 ~~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      ++.++||||||||||||+++++++++++|+.|.+.+||+|
T Consensus        26 ~~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V   65 (657)
T PTZ00186         26 QGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVV   65 (657)
T ss_pred             cceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEE
Confidence            4568999999999999999999999999999999999986

>PRK13410 molecular chaperone DnaK; Provisional

Probab=99.54  E-value=9.4e-15  Score=91.56  Aligned_cols=39  Identities=33%  Similarity=0.623  Sum_probs=37.0

Q ss_pred             ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      +.++||||||||||||++++|++++++|+.|++.+||+|
T Consensus         2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V   40 (668)
T PRK13410          2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVV   40 (668)
T ss_pred             CcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEE
Confidence            568999999999999999999999999999999999986

>PRK13411 molecular chaperone DnaK; Provisional

Probab=99.54  E-value=1.1e-14  Score=90.83  Aligned_cols=39  Identities=31%  Similarity=0.641  Sum_probs=37.0

Q ss_pred             ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      +.++||||||||||||++++|++++++|++|+|.+||+|
T Consensus         2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V   40 (653)
T PRK13411          2 GKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIV   40 (653)
T ss_pred             CcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEE
Confidence            468999999999999999999999999999999999986

>PTZ00400 DnaK-type molecular chaperone; Provisional

Probab=99.53  E-value=1.2e-14  Score=90.84  Aligned_cols=39  Identities=28%  Similarity=0.583  Sum_probs=36.9

Q ss_pred             ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      ..++||||||||||||+++++++++++|++|+|.+||+|
T Consensus        41 ~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V   79 (663)
T PTZ00400         41 GDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVV   79 (663)
T ss_pred             CcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEE
Confidence            368999999999999999999999999999999999986

>PLN03184 chloroplast Hsp70; Provisional

Probab=99.53  E-value=1.5e-14  Score=90.60  Aligned_cols=39  Identities=36%  Similarity=0.665  Sum_probs=37.0

Q ss_pred             ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      +.++||||||||||||++++|++++++|++|++.+||+|
T Consensus        39 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V   77 (673)
T PLN03184         39 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV   77 (673)
T ss_pred             CCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEE
Confidence            468999999999999999999999999999999999986

>CHL00094 dnaK heat shock protein 70

Probab=99.53  E-value=1.6e-14  Score=89.59  Aligned_cols=39  Identities=31%  Similarity=0.611  Sum_probs=37.0

Q ss_pred             ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      +.++||||||||||+|++++|++++++|++|++.+||+|
T Consensus         2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V   40 (621)
T CHL00094          2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIV   40 (621)
T ss_pred             CceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEE
Confidence            479999999999999999999999999999999999986

>PRK05183 hscA chaperone protein HscA; Provisional

Probab=99.52  E-value=2.5e-14  Score=88.88  Aligned_cols=38  Identities=32%  Similarity=0.626  Sum_probs=36.3

Q ss_pred             eEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          4 TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      .+||||||||||+||++++|++++++|++|++.+||+|
T Consensus        20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V   57 (616)
T PRK05183         20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVV   57 (616)
T ss_pred             eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEE
Confidence            57999999999999999999999999999999999986

>TIGR01991 HscA Fe-S protein assembly chaperone HscA

Probab=99.51  E-value=1.6e-14  Score=89.41  Aligned_cols=37  Identities=30%  Similarity=0.567  Sum_probs=35.4

Q ss_pred             EEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          5 VFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      +|||||||||||||++++|++++++|++|++.+||+|
T Consensus         1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V   37 (599)
T TIGR01991         1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVV   37 (599)
T ss_pred             CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEE
Confidence            5899999999999999999999999999999999986

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.

>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=2e-14  Score=89.16  Aligned_cols=39  Identities=33%  Similarity=0.706  Sum_probs=36.7

Q ss_pred             ceEEEEeCCcceEEEEEEeCC-eEEEEeCCCCCeeeEeeC
Q psy17247          3 KTVFGLYLGNSSASIGICRDG-KVEILANEAGDRVTPAVV   41 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~-~~~ii~~~~~~~~~pS~V   41 (41)
                      +.+|||||||||||||+++++ .++++.|.+|.|++||+|
T Consensus         5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv   44 (579)
T COG0443           5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVV   44 (579)
T ss_pred             ceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEE
Confidence            479999999999999999988 799999999999999986

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=99.51  E-value=2.3e-14  Score=89.33  Aligned_cols=39  Identities=36%  Similarity=0.725  Sum_probs=36.9

Q ss_pred             ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      +.++|||||||||+||+++++++++++|++|+|.+||+|
T Consensus         4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V   42 (653)
T PTZ00009          4 GPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYV   42 (653)
T ss_pred             ccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEE
Confidence            468999999999999999999999999999999999986

>TIGR02350 prok_dnaK chaperone protein DnaK

Probab=99.49  E-value=3.9e-14  Score=87.15  Aligned_cols=38  Identities=29%  Similarity=0.657  Sum_probs=35.9

Q ss_pred             eEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          4 TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      .++|||||||||++|++++|++++++|++|++.+||+|
T Consensus         1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V   38 (595)
T TIGR02350         1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVV   38 (595)
T ss_pred             CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEE
Confidence            37999999999999999999999999999999999986

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.

>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins

Probab=99.43  E-value=1.9e-13  Score=83.07  Aligned_cols=37  Identities=43%  Similarity=0.803  Sum_probs=31.5

Q ss_pred             EEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          5 VFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      ++||||||+||+||++++++++++.|+.|+|.+||+|
T Consensus         1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v   37 (602)
T PF00012_consen    1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVV   37 (602)
T ss_dssp             EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEE
T ss_pred             CEEEEeccCCEEEEEEEecccccccccccccccccee
Confidence            6899999999999999999999999999999999985

Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....

>KOG0101|consensus

Probab=99.35  E-value=8.2e-13  Score=82.97  Aligned_cols=39  Identities=44%  Similarity=0.836  Sum_probs=37.2

Q ss_pred             ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      +.+||||||||+|||+++.++++++++|++|+|++||+|
T Consensus         7 ~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~v   45 (620)
T KOG0101|consen    7 SVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVV   45 (620)
T ss_pred             cceeeEeccCccceeeeEcCCcceeeeccccCcccccee
Confidence            578999999999999999999999999999999999986

>KOG0102|consensus

Probab=99.29  E-value=2.2e-12  Score=80.69  Aligned_cols=39  Identities=33%  Similarity=0.627  Sum_probs=37.0

Q ss_pred             ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      ..++|||+||||||+|+++++.++++.|.+|.|++||+|
T Consensus        27 ~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvv   65 (640)
T KOG0102|consen   27 GKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVV   65 (640)
T ss_pred             CceeeEeeeccceeEEEEeCCCceEeecccccccCCceE
Confidence            468999999999999999999999999999999999986

>KOG0103|consensus

Probab=98.71  E-value=1.1e-08  Score=65.37  Aligned_cols=37  Identities=43%  Similarity=0.768  Sum_probs=35.8

Q ss_pred             EEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          5 VFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      ++|||||.-||.+|+.+.+..++|.|+.++|.+|++|
T Consensus         3 vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~v   39 (727)
T KOG0103|consen    3 VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIV   39 (727)
T ss_pred             ceeeeccccceeeeeeccCCceeeeeccccccCccee
Confidence            8999999999999999999999999999999999986

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family

Probab=97.83  E-value=1.7e-05  Score=46.29  Aligned_cols=19  Identities=21%  Similarity=0.370  Sum_probs=15.8

Q ss_pred             EEEEeCCcceEEEEEEeCC
Q psy17247          5 VFGLYLGNSSASIGICRDG   23 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~~~   23 (41)
                      -+||||||+||+++...++
T Consensus         4 ~~giDlGt~~s~i~~~~~~   22 (333)
T TIGR00904         4 DIGIDLGTANTLVYVKGRG   22 (333)
T ss_pred             eeEEecCcceEEEEECCCC
Confidence            4999999999999886443

A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.

>PRK13928 rod shape-determining protein Mbl; Provisional

Probab=97.77  E-value=2.3e-05  Score=45.79  Aligned_cols=20  Identities=15%  Similarity=0.225  Sum_probs=16.3

Q ss_pred             ceEEEEeCCcceEEEEEEeC
Q psy17247          3 KTVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~   22 (41)
                      +.-+||||||+|+.++...+
T Consensus         3 ~~~~gIDlGt~~~~i~~~~~   22 (336)
T PRK13928          3 GRDIGIDLGTANVLVYVKGK   22 (336)
T ss_pred             CceeEEEcccccEEEEECCC
Confidence            34589999999999988633

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=97.70  E-value=3.9e-05  Score=45.08  Aligned_cols=20  Identities=25%  Similarity=0.361  Sum_probs=15.0

Q ss_pred             eEEEEeCCcceEEEEEEeCCeE
Q psy17247          4 TVFGLYLGNSSASIGICRDGKV   25 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~~~~   25 (41)
                      ..+||||||+|+++  |.+++.
T Consensus         5 ~~~giDlGt~~~~i--~~~~~~   24 (335)
T PRK13929          5 TEIGIDLGTANILV--YSKNKG   24 (335)
T ss_pred             CeEEEEcccccEEE--EECCCc
Confidence            46999999999985  444443

>PRK13930 rod shape-determining protein MreB; Provisional

Probab=97.46  E-value=0.00012  Score=42.46  Aligned_cols=19  Identities=16%  Similarity=0.270  Sum_probs=16.1

Q ss_pred             eEEEEeCCcceEEEEEEeC
Q psy17247          4 TVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~   22 (41)
                      ..+||||||+|++++.+.+
T Consensus         9 ~~vgiDlGt~~t~i~~~~~   27 (335)
T PRK13930          9 KDIGIDLGTANTLVYVKGK   27 (335)
T ss_pred             cceEEEcCCCcEEEEECCC
Confidence            3599999999999998733

>PRK13927 rod shape-determining protein MreB; Provisional

Probab=97.35  E-value=0.00028  Score=41.01  Aligned_cols=18  Identities=17%  Similarity=0.322  Sum_probs=14.9

Q ss_pred             ceEEEEeCCcceEEEEEE
Q psy17247          3 KTVFGLYLGNSSASIGIC   20 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~   20 (41)
                      +..+||||||+|++++..
T Consensus         5 ~~~igIDlGt~~~~i~~~   22 (334)
T PRK13927          5 SNDLGIDLGTANTLVYVK   22 (334)
T ss_pred             cceeEEEcCcceEEEEEC
Confidence            457999999999998554

>PRK10939 autoinducer-2 (AI-2) kinase; Provisional

Probab=96.99  E-value=0.0011  Score=40.85  Aligned_cols=21  Identities=19%  Similarity=0.110  Sum_probs=18.9

Q ss_pred             CCceEEEEeCCcceEEEEEEe
Q psy17247          1 MSKTVFGLYLGNSSASIGICR   21 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~   21 (41)
                      ||+.++|||+|||++-+++++
T Consensus         1 ~m~~~lgID~GTts~Ka~l~d   21 (520)
T PRK10939          1 SMSYLMALDAGTGSIRAVIFD   21 (520)
T ss_pred             CCcEEEEEecCCCceEEEEEC
Confidence            567899999999999999994

>PRK04123 ribulokinase; Provisional

Probab=96.92  E-value=0.0017  Score=40.26  Aligned_cols=21  Identities=29%  Similarity=0.347  Sum_probs=19.5

Q ss_pred             CCceEEEEeCCcceEEEEEEe
Q psy17247          1 MSKTVFGLYLGNSSASIGICR   21 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~   21 (41)
                      |+..++|||+|||++-+++++
T Consensus         1 ~~~~~lgiD~GTts~Ka~l~d   21 (548)
T PRK04123          1 MMAYVIGLDFGTDSVRALLVD   21 (548)
T ss_pred             CCcEEEEEecCCCceEEEEEE
Confidence            778899999999999999996

>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

Probab=96.76  E-value=0.0031  Score=38.97  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=19.8

Q ss_pred             CCceEEEEeCCcceEEEEEEeCC
Q psy17247          1 MSKTVFGLYLGNSSASIGICRDG   23 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~~~   23 (41)
                      |++.++|||+|||+.-+.+++.+
T Consensus         2 ~~~~~lgIDiGTt~~Kavl~d~~   24 (502)
T COG1070           2 MMKYVLGIDIGTTSVKAVLFDED   24 (502)
T ss_pred             CccEEEEEEcCCCcEEEEEEeCC
Confidence            56789999999999999999544

>PRK00047 glpK glycerol kinase; Provisional

Probab=96.47  E-value=0.0043  Score=38.05  Aligned_cols=19  Identities=26%  Similarity=0.279  Sum_probs=16.9

Q ss_pred             ceEEEEeCCcceEEEEEEe
Q psy17247          3 KTVFGLYLGNSSASIGICR   21 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~   21 (41)
                      ..++|||+|||+.-+++++
T Consensus         5 ~~~lgiD~GTts~Ka~l~d   23 (498)
T PRK00047          5 KYILALDQGTTSSRAIIFD   23 (498)
T ss_pred             CEEEEEecCCCceEEEEEC
Confidence            4589999999999999994

>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related

Probab=96.42  E-value=0.0058  Score=34.15  Aligned_cols=19  Identities=16%  Similarity=0.347  Sum_probs=16.8

Q ss_pred             eEEEEeCCcceEEEEEEeC
Q psy17247          4 TVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~   22 (41)
                      .++|||+|||+.-+++++.
T Consensus         1 y~lgiDiGTts~K~~l~d~   19 (245)
T PF00370_consen    1 YYLGIDIGTTSVKAVLFDE   19 (245)
T ss_dssp             EEEEEEECSSEEEEEEEET
T ss_pred             CEEEEEEcccceEEEEEeC
Confidence            3789999999999999963

These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....

>PRK10331 L-fuculokinase; Provisional

Probab=96.37  E-value=0.0054  Score=37.38  Aligned_cols=22  Identities=18%  Similarity=0.228  Sum_probs=18.4

Q ss_pred             ceEEEEeCCcceEEEEEEe-CCe
Q psy17247          3 KTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      +.++|||+|||+.-+++++ +|+
T Consensus         2 ~~~lgID~GTt~~Ka~l~d~~G~   24 (470)
T PRK10331          2 DVILVLDCGATNVRAIAVDRQGK   24 (470)
T ss_pred             ceEEEEecCCCceEEEEEcCCCc
Confidence            4689999999999999994 453

>PTZ00294 glycerol kinase-like protein; Provisional

Probab=96.27  E-value=0.0068  Score=37.30  Aligned_cols=19  Identities=16%  Similarity=0.144  Sum_probs=17.2

Q ss_pred             eEEEEeCCcceEEEEEEeC
Q psy17247          4 TVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~   22 (41)
                      .++|||+|||+.-+++++.
T Consensus         3 ~~lgiDiGTts~Ka~l~d~   21 (504)
T PTZ00294          3 YIGSIDQGTTSTRFIIFDE   21 (504)
T ss_pred             EEEEEecCCCceEEEEECC
Confidence            7899999999999999953

>KOG0104|consensus

Probab=96.20  E-value=0.0046  Score=41.04  Aligned_cols=39  Identities=28%  Similarity=0.512  Sum_probs=34.1

Q ss_pred             ceEEEEeCCcceEEEEEEeCCe-EEEEeCCCCCeeeEeeC
Q psy17247          3 KTVFGLYLGNSSASIGICRDGK-VEILANEAGDRVTPAVV   41 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~-~~ii~~~~~~~~~pS~V   41 (41)
                      ..+++||||+-+--+|+...|- .+|+.|...+|-+|+.|
T Consensus        22 ~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~v   61 (902)
T KOG0104|consen   22 LAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIV   61 (902)
T ss_pred             hhheeeecccceeEEEEecCCCCeEEeechhhcccCcceE
Confidence            3578999999999999998775 48888999999999875

>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes

Probab=96.04  E-value=0.004  Score=37.27  Aligned_cols=19  Identities=26%  Similarity=0.338  Sum_probs=14.0

Q ss_pred             eEEEEeCCcceEEEEEEeC
Q psy17247          4 TVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~   22 (41)
                      .-+||||||+|+.|..-.+
T Consensus         2 ~~igIDLGT~~t~i~~~~~   20 (326)
T PF06723_consen    2 KDIGIDLGTSNTRIYVKGK   20 (326)
T ss_dssp             SEEEEEE-SSEEEEEETTT
T ss_pred             CceEEecCcccEEEEECCC
Confidence            4689999999999865433

In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.

>TIGR02628 fuculo_kin_coli L-fuculokinase

Probab=95.87  E-value=0.013  Score=35.79  Aligned_cols=19  Identities=11%  Similarity=0.030  Sum_probs=16.8

Q ss_pred             eEEEEeCCcceEEEEEEeC
Q psy17247          4 TVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~   22 (41)
                      .++|||+|||+.-+++++.
T Consensus         2 ~ilgiD~GTss~K~~l~d~   20 (465)
T TIGR02628         2 VILVLDCGATNLRAIAINR   20 (465)
T ss_pred             eEEEEecCCCcEEEEEEcC
Confidence            4789999999999999953

Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.

>PRK15027 xylulokinase; Provisional

Probab=95.84  E-value=0.011  Score=36.21  Aligned_cols=18  Identities=22%  Similarity=0.433  Sum_probs=16.2

Q ss_pred             EEEEeCCcceEEEEEEeC
Q psy17247          5 VFGLYLGNSSASIGICRD   22 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~~   22 (41)
                      ++|||+|||+.-+++++.
T Consensus         2 ~lgID~GTts~Ka~l~d~   19 (484)
T PRK15027          2 YIGIDLGTSGVKVILLNE   19 (484)
T ss_pred             EEEEEecccceEEEEEcC
Confidence            689999999999999953

>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination

Probab=95.78  E-value=0.03  Score=30.02  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=20.3

Q ss_pred             eEEEEeCCcceEEEEEEe--CCeEEEEe
Q psy17247          4 TVFGLYLGNSSASIGICR--DGKVEILA   29 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~--~~~~~ii~   29 (41)
                      .++|||.|++|..+|+.+  +++++++.
T Consensus         1 rILGIDPGl~~~G~av~~~~~~~~~~~~   28 (154)
T cd00529           1 RILGIDPGSRNTGYGVIEQEGRKLIYLA   28 (154)
T ss_pred             CEEEEccCcCceEEEEEEeeCCeEEEEE
Confidence            379999999999999973  55665543

HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.

>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]

Probab=95.73  E-value=0.012  Score=35.80  Aligned_cols=17  Identities=18%  Similarity=0.319  Sum_probs=14.9

Q ss_pred             eEEEEeCCcceEEEEEE
Q psy17247          4 TVFGLYLGNSSASIGIC   20 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~   20 (41)
                      .-+||||||.|..|.+-
T Consensus         7 ~diGIDLGTanTlV~~k   23 (342)
T COG1077           7 NDIGIDLGTANTLVYVK   23 (342)
T ss_pred             ccceeeecccceEEEEc
Confidence            36899999999999876

>PLN00130 succinate dehydrogenase (SDH3); Provisional

Probab=95.66  E-value=0.00072  Score=38.39  Aligned_cols=19  Identities=21%  Similarity=0.225  Sum_probs=16.4

Q ss_pred             eEEEEeCCcceEEEEEEeC
Q psy17247          4 TVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~   22 (41)
                      .+||+|+||+|+|++..++
T Consensus        58 d~~g~~~gt~n~~~~~~e~   76 (213)
T PLN00130         58 DILGTGLGTNNAIREEREK   76 (213)
T ss_pred             ceeccCCCcchHHHHHHhc
Confidence            4799999999999987754

>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative

Probab=95.65  E-value=0.018  Score=32.68  Aligned_cols=20  Identities=25%  Similarity=0.546  Sum_probs=17.3

Q ss_pred             EEEEeCCcceEEEEEEeCCe
Q psy17247          5 VFGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~~~~   24 (41)
                      .+|||.|||++.++++++++
T Consensus         2 ~lGIDiGtts~K~vl~d~g~   21 (248)
T TIGR00241         2 SLGIDSGSTTTKMVLMEDGK   21 (248)
T ss_pred             EEEEEcChhheEEEEEcCCE
Confidence            68999999999999997543

This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.

>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase

Probab=95.62  E-value=0.016  Score=36.15  Aligned_cols=18  Identities=28%  Similarity=0.348  Sum_probs=16.2

Q ss_pred             eEEEEeCCcceEEEEEEe
Q psy17247          4 TVFGLYLGNSSASIGICR   21 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~   21 (41)
                      .++|||+|||++-+++++
T Consensus         1 ~~lgID~GTts~Ka~l~d   18 (541)
T TIGR01315         1 HYIGVDVGTGSARACIID   18 (541)
T ss_pred             CEEEEEecCcCEEEEEEc
Confidence            368999999999999994

This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.

>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T

Probab=95.53  E-value=0.05  Score=27.93  Aligned_cols=21  Identities=24%  Similarity=0.480  Sum_probs=16.9

Q ss_pred             EEEEeCCcceEEEEEEeCCeE
Q psy17247          5 VFGLYLGNSSASIGICRDGKV   25 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~~~~~   25 (41)
                      +++||+|++..++++++.+..
T Consensus         1 i~~iDiGs~~~~~~i~~~~~~   21 (120)
T PF14450_consen    1 IVVIDIGSSKTKVAIAEDGSD   21 (120)
T ss_dssp             EEEEEE-SSSEEEEEEETTEE
T ss_pred             CEEEEcCCCcEEEEEEEeCCC
Confidence            579999999999999977543

>TIGR01311 glycerol_kin glycerol kinase

Probab=95.46  E-value=0.023  Score=34.91  Aligned_cols=18  Identities=11%  Similarity=0.196  Sum_probs=16.4

Q ss_pred             eEEEEeCCcceEEEEEEe
Q psy17247          4 TVFGLYLGNSSASIGICR   21 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~   21 (41)
                      .++|||+|||+.-+++++
T Consensus         2 ~~lgiDiGtt~iKa~l~d   19 (493)
T TIGR01311         2 YILAIDQGTTSSRAIVFD   19 (493)
T ss_pred             eEEEEecCCCceEEEEEC
Confidence            579999999999999994

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.

>smart00732 YqgFc Likely ribonuclease with RNase H fold

Probab=95.42  E-value=0.029  Score=27.21  Aligned_cols=18  Identities=22%  Similarity=0.447  Sum_probs=16.2

Q ss_pred             eEEEEeCCcceEEEEEEe
Q psy17247          4 TVFGLYLGNSSASIGICR   21 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~   21 (41)
                      .++|||+|.|+.-+|+.+
T Consensus         2 ~ilgiD~Ggt~i~~a~~d   19 (99)
T smart00732        2 RVLGLDPGRKGIGVAVVD   19 (99)
T ss_pred             cEEEEccCCCeEEEEEEC
Confidence            479999999999999984

YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.

>TIGR01314 gntK_FGGY gluconate kinase, FGGY type

Probab=95.38  E-value=0.021  Score=35.13  Aligned_cols=17  Identities=18%  Similarity=0.409  Sum_probs=15.8

Q ss_pred             EEEEeCCcceEEEEEEe
Q psy17247          5 VFGLYLGNSSASIGICR   21 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~   21 (41)
                      ++|||+|||+.-+++++
T Consensus         2 ~lgiDiGtt~~K~~l~d   18 (505)
T TIGR01314         2 MIGVDIGTTSTKAVLFE   18 (505)
T ss_pred             EEEEeccccceEEEEEc
Confidence            68999999999999994

Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.

>TIGR01234 L-ribulokinase L-ribulokinase

Probab=95.21  E-value=0.036  Score=34.47  Aligned_cols=18  Identities=17%  Similarity=0.150  Sum_probs=16.8

Q ss_pred             eEEEEeCCcceEEEEEEe
Q psy17247          4 TVFGLYLGNSSASIGICR   21 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~   21 (41)
                      .++|||+|||+.-+++++
T Consensus         2 ~~lgiD~GTss~Ka~l~d   19 (536)
T TIGR01234         2 YAIGVDFGTLSGRALAVD   19 (536)
T ss_pred             eEEEEecCCCceEEEEEE
Confidence            479999999999999998

This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.

>PLN02295 glycerol kinase

Probab=95.18  E-value=0.028  Score=34.75  Aligned_cols=20  Identities=25%  Similarity=0.267  Sum_probs=17.1

Q ss_pred             EEEEeCCcceEEEEEEe-CCe
Q psy17247          5 VFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~-~~~   24 (41)
                      ++|||+|||+.-+++++ +|+
T Consensus         2 vlgID~GTts~Ka~l~d~~G~   22 (512)
T PLN02295          2 VGAIDQGTTSTRFIIYDRDAR   22 (512)
T ss_pred             EEEEecCCCceEEEEECCCCC
Confidence            68999999999999994 443

>PRK13318 pantothenate kinase; Reviewed

Probab=94.31  E-value=0.09  Score=30.04  Aligned_cols=20  Identities=25%  Similarity=0.645  Sum_probs=17.9

Q ss_pred             EEEEeCCcceEEEEEEeCCe
Q psy17247          5 VFGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~~~~   24 (41)
                      +++||+|.|+..++++++++
T Consensus         2 iL~IDIGnT~iK~al~d~g~   21 (258)
T PRK13318          2 LLAIDVGNTNTVFGLYEGGK   21 (258)
T ss_pred             EEEEEECCCcEEEEEEECCE
Confidence            68999999999999998654

>PRK13321 pantothenate kinase; Reviewed

Probab=94.27  E-value=0.11  Score=29.73  Aligned_cols=20  Identities=15%  Similarity=0.461  Sum_probs=17.8

Q ss_pred             EEEEeCCcceEEEEEEeCCe
Q psy17247          5 VFGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~~~~   24 (41)
                      .++||+|.|+..+|++++++
T Consensus         2 iL~IDIGnT~ik~gl~~~~~   21 (256)
T PRK13321          2 LLLIDVGNTNIKLGVFDGDR   21 (256)
T ss_pred             EEEEEECCCeEEEEEEECCE
Confidence            68999999999999998653

>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []

Probab=94.00  E-value=0.24  Score=26.55  Aligned_cols=25  Identities=20%  Similarity=0.481  Sum_probs=18.3

Q ss_pred             EEEEeCCcceEEEEEE--eCCeEEEEe
Q psy17247          5 VFGLYLGNSSASIGIC--RDGKVEILA   29 (41)
Q Consensus         5 ~iGiD~GTtns~va~~--~~~~~~ii~   29 (41)
                      ++|||-|.+++-+|+.  .+++.+++.
T Consensus         1 ILGIDPgl~~tG~avi~~~~~~~~~i~   27 (149)
T PF02075_consen    1 ILGIDPGLSNTGYAVIEEDGGKLRLID   27 (149)
T ss_dssp             EEEEE--SSEEEEEEEEEETTEEEEEE
T ss_pred             CEEECCCCCCeeEEEEEeeCCEEEEEE
Confidence            6899999999999998  456666654

RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.

>PRK00109 Holliday junction resolvase-like protein; Reviewed

Probab=93.84  E-value=0.12  Score=27.45  Aligned_cols=21  Identities=19%  Similarity=0.445  Sum_probs=18.2

Q ss_pred             CceEEEEeCCcceEEEEEEeC
Q psy17247          2 SKTVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         2 ~~~~iGiD~GTtns~va~~~~   22 (41)
                      ++.++|||+|+..+-+|+.+.
T Consensus         3 ~~~iLalD~G~kriGvAv~d~   23 (138)
T PRK00109          3 SGRILGLDVGTKRIGVAVSDP   23 (138)
T ss_pred             CCcEEEEEeCCCEEEEEEecC
Confidence            456999999999999999854

>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination

Probab=93.75  E-value=0.14  Score=27.12  Aligned_cols=20  Identities=20%  Similarity=0.361  Sum_probs=18.0

Q ss_pred             eEEEEeCCcceEEEEEEeCC
Q psy17247          4 TVFGLYLGNSSASIGICRDG   23 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~~   23 (41)
                      .++|||+|+...-+|+.+..
T Consensus         2 riL~lD~G~kriGiAvsd~~   21 (135)
T PF03652_consen    2 RILGLDYGTKRIGIAVSDPL   21 (135)
T ss_dssp             EEEEEEECSSEEEEEEEETT
T ss_pred             eEEEEEeCCCeEEEEEecCC
Confidence            68999999999999999654

The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.

>PRK13326 pantothenate kinase; Reviewed

Probab=93.47  E-value=0.18  Score=29.35  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.4

Q ss_pred             ceEEEEeCCcceEEEEEEeCCe
Q psy17247          3 KTVFGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~   24 (41)
                      ++.+.||.|+||..++++++++
T Consensus         6 ~~~L~IDiGNT~ik~glf~~~~   27 (262)
T PRK13326          6 SSQLIIDIGNTSISFALYKDNK   27 (262)
T ss_pred             cEEEEEEeCCCeEEEEEEECCE
Confidence            4678999999999999998765

>PLN02669 xylulokinase

Probab=93.20  E-value=0.15  Score=32.27  Aligned_cols=19  Identities=11%  Similarity=0.111  Sum_probs=16.7

Q ss_pred             ceEEEEeCCcceEEEEEEe
Q psy17247          3 KTVFGLYLGNSSASIGICR   21 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~   21 (41)
                      ..+||||+||+..-..+++
T Consensus         8 ~~~LGiD~GT~s~Ka~l~d   26 (556)
T PLN02669          8 SLFLGFDSSTQSLKATVLD   26 (556)
T ss_pred             CeEEEEecccCCeEEEEEc
Confidence            3589999999999999984

>PRK00039 ruvC Holliday junction resolvase; Reviewed

Probab=92.95  E-value=0.14  Score=28.02  Aligned_cols=26  Identities=12%  Similarity=0.324  Sum_probs=19.9

Q ss_pred             ceEEEEeCCcceEEEEEEe--CCeEEEE
Q psy17247          3 KTVFGLYLGNSSASIGICR--DGKVEIL   28 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~--~~~~~ii   28 (41)
                      +.++|||-|++++-+|+.+  ++++.++
T Consensus         2 m~iLGIDPgl~~tG~avi~~~~~~~~~~   29 (164)
T PRK00039          2 MRILGIDPGLRRTGYGVIEVEGRRLSYV   29 (164)
T ss_pred             CEEEEEccccCceeEEEEEecCCeEEEE
Confidence            4789999999999999984  3334444

>smart00842 FtsA Cell division protein FtsA

Probab=92.33  E-value=0.29  Score=26.63  Aligned_cols=25  Identities=24%  Similarity=0.590  Sum_probs=19.3

Q ss_pred             EEEEeCCcceEEEEEEe---CCeEEEEe
Q psy17247          5 VFGLYLGNSSASIGICR---DGKVEILA   29 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~---~~~~~ii~   29 (41)
                      ++|+|+||++-++.+.+   +++++++.
T Consensus         1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g   28 (187)
T smart00842        1 IVGLDIGTSKIKALVAEVDEDGEINVIG   28 (187)
T ss_pred             CEEEEeccceEEEEEEEEcCCCCEEEEE
Confidence            47999999999987762   45677774

FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.

>TIGR01312 XylB D-xylulose kinase

Probab=92.28  E-value=0.11  Score=31.51  Aligned_cols=19  Identities=26%  Similarity=0.501  Sum_probs=16.0

Q ss_pred             EEEeCCcceEEEEEEe-CCe
Q psy17247          6 FGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         6 iGiD~GTtns~va~~~-~~~   24 (41)
                      +|||+||++..+++++ +++
T Consensus         1 lgIDiGtt~ik~~l~d~~g~   20 (481)
T TIGR01312         1 LGIDLGTSGVKALLVDEQGE   20 (481)
T ss_pred             CceeecCcceEEEEECCCCC
Confidence            6999999999999994 443

D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.

>COG1069 AraB Ribulose kinase [Energy production and conversion]

Probab=92.26  E-value=0.22  Score=32.10  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=19.6

Q ss_pred             CCceEEEEeCCcceEEEEEEeC
Q psy17247          1 MSKTVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~~   22 (41)
                      |++..||+||||..-.+++++-
T Consensus         1 ~~~~~iGvDvGTgSaRA~v~D~   22 (544)
T COG1069           1 MMAYVIGVDVGTGSARAGVFDC   22 (544)
T ss_pred             CccEEEEEeecCCceeEEEEEc
Confidence            6789999999999999999853

>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A

Probab=92.13  E-value=0.27  Score=30.93  Aligned_cols=22  Identities=18%  Similarity=0.345  Sum_probs=19.0

Q ss_pred             ceEEEEeCCcceEEEEEEeCCe
Q psy17247          3 KTVFGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~   24 (41)
                      ..++|||.|.|.+-+.++++++
T Consensus         2 ~y~lGIDIGSTsTKaVVmd~~g   23 (432)
T TIGR02259         2 ECFVGIDLGSTTTKAVLMDDKG   23 (432)
T ss_pred             ceEEEEEcCchhEEEEEEcCCC
Confidence            4689999999999999997664

This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).

>PRK00292 glk glucokinase; Provisional

Probab=92.12  E-value=0.27  Score=28.56  Aligned_cols=18  Identities=17%  Similarity=0.401  Sum_probs=16.8

Q ss_pred             eEEEEeCCcceEEEEEEe
Q psy17247          4 TVFGLYLGNSSASIGICR   21 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~   21 (41)
                      .++|+|+|-|+..+++.+
T Consensus         3 ~~lgiDIGgT~i~~~l~~   20 (316)
T PRK00292          3 PALVGDIGGTNARFALCD   20 (316)
T ss_pred             eEEEEEcCccceEEEEEe
Confidence            589999999999999986

>PRK13320 pantothenate kinase; Reviewed

Probab=91.96  E-value=0.41  Score=27.52  Aligned_cols=22  Identities=9%  Similarity=0.309  Sum_probs=19.4

Q ss_pred             ceEEEEeCCcceEEEEEEeCCe
Q psy17247          3 KTVFGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~   24 (41)
                      ++.+.||.|+|+.-++++++++
T Consensus         2 ~M~L~iDiGNT~ik~~~~~~~~   23 (244)
T PRK13320          2 SMNLVIDIGNTTTKLAVFEGDE   23 (244)
T ss_pred             ceEEEEEeCCCcEEEEEEECCE
Confidence            3689999999999999998765

>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit

Probab=91.79  E-value=0.34  Score=28.95  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=18.4

Q ss_pred             eEEEEeCCcceEEEEEEeCCe
Q psy17247          4 TVFGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~~~   24 (41)
                      ..+|||.|.|.+-+++.++++
T Consensus        33 ~~~GIDiGStt~K~Vlld~~~   53 (293)
T TIGR03192        33 ITCGIDVGSVSSQAVLVCDGE   53 (293)
T ss_pred             EEEEEEeCchhEEEEEEeCCE
Confidence            579999999999999998653

Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.

>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition

Probab=91.62  E-value=0.72  Score=23.74  Aligned_cols=20  Identities=5%  Similarity=0.217  Sum_probs=16.9

Q ss_pred             EEEEeCCcceEEEEEEeCCe
Q psy17247          5 VFGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~~~~   24 (41)
                      ++|||++.....+++...+.
T Consensus         1 ~vGiDv~k~~~~v~v~~~~~   20 (144)
T PF01548_consen    1 FVGIDVSKDTHDVCVIDPNG   20 (144)
T ss_pred             eEEEEcccCeEEEEEEcCCC
Confidence            58999999999999985544

This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]

Probab=91.26  E-value=0.23  Score=30.00  Aligned_cols=24  Identities=17%  Similarity=0.429  Sum_probs=19.9

Q ss_pred             CCceEEEEeCCcceEEEEEEeCCe
Q psy17247          1 MSKTVFGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~~~~   24 (41)
                      |.+.++|||.|..|.-+|..++..
T Consensus         1 ~~~kilGiDIGGAntk~a~~DG~~   24 (330)
T COG1548           1 MKMKILGIDIGGANTKIASSDGDN   24 (330)
T ss_pred             CCceEEEeeccCccchhhhccCCe
Confidence            678899999999999999854433

>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]

Probab=91.06  E-value=0.45  Score=27.89  Aligned_cols=21  Identities=24%  Similarity=0.471  Sum_probs=18.3

Q ss_pred             EEEEeCCcceEEEEEEeCCeE
Q psy17247          5 VFGLYLGNSSASIGICRDGKV   25 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~~~~~   25 (41)
                      .+.||.|+|+..+|+++++++
T Consensus         2 ~L~iDiGNT~~~~a~~~~~~~   22 (251)
T COG1521           2 LLLIDIGNTRIVFALYEGGKV   22 (251)
T ss_pred             eEEEEeCCCeEEEEEecCCeE
Confidence            579999999999999987654

>PRK13331 pantothenate kinase; Reviewed

Probab=90.89  E-value=0.57  Score=27.35  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=19.3

Q ss_pred             ceEEEEeCCcceEEEEEEeCCe
Q psy17247          3 KTVFGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~   24 (41)
                      ...+.||.|+||..++++++++
T Consensus         7 ~~~L~iDiGNT~~~~g~f~~~~   28 (251)
T PRK13331          7 NEWLALMIGNSRLHWGYFSGET   28 (251)
T ss_pred             CcEEEEEeCCCcEEEEEEECCE
Confidence            4588999999999999998765

>PRK09472 ftsA cell division protein FtsA; Reviewed

Probab=90.78  E-value=0.87  Score=27.79  Aligned_cols=26  Identities=31%  Similarity=0.516  Sum_probs=20.0

Q ss_pred             eEEEEeCCcceEEEEEEe---CCeEEEEe
Q psy17247          4 TVFGLYLGNSSASIGICR---DGKVEILA   29 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~---~~~~~ii~   29 (41)
                      .++|+|+||+.-++.+.+   +++++++.
T Consensus         9 ~i~~lDIGsskv~~vv~~~~~~~~~~i~g   37 (420)
T PRK09472          9 LVVGLEIGTAKVAALVGEVLPDGMVNIIG   37 (420)
T ss_pred             EEEEEEcccceEEEEEEEEcCCCCEEEEE
Confidence            577999999999877653   56677775

>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B

Probab=90.64  E-value=0.42  Score=25.87  Aligned_cols=21  Identities=10%  Similarity=0.191  Sum_probs=17.9

Q ss_pred             ceEEEEeCCcceEEEEEEeCC
Q psy17247          3 KTVFGLYLGNSSASIGICRDG   23 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~   23 (41)
                      +.++|+||||-.+-||+-+..
T Consensus         2 ~~ilalD~G~KrIGvA~sd~~   22 (141)
T COG0816           2 MRILALDVGTKRIGVAVSDIL   22 (141)
T ss_pred             ceEEEEecCCceEEEEEecCC
Confidence            478999999999999997543

subtilis) [DNA replication, recombination, and repair]

>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P)

Probab=90.34  E-value=0.4  Score=27.03  Aligned_cols=18  Identities=17%  Similarity=0.392  Sum_probs=16.2

Q ss_pred             ceEEEEeCCcceEEEEEE
Q psy17247          3 KTVFGLYLGNSSASIGIC   20 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~   20 (41)
                      ..+++||||-||--|+..
T Consensus        63 G~~LalDlGGTnlRv~~V   80 (206)
T PF00349_consen   63 GDFLALDLGGTNLRVALV   80 (206)
T ss_dssp             EEEEEEEESSSSEEEEEE
T ss_pred             ceEEEEeecCcEEEEEEE
Confidence            458999999999999987

The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....

>PRK13317 pantothenate kinase; Provisional

Probab=90.30  E-value=0.82  Score=26.84  Aligned_cols=22  Identities=18%  Similarity=0.246  Sum_probs=18.3

Q ss_pred             ceEEEEeCCcceEEEEEEeCCe
Q psy17247          3 KTVFGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~   24 (41)
                      ...+|||.|.|..-+++.+++.
T Consensus         2 ~~~iGIDiGstt~K~v~~~~~~   23 (277)
T PRK13317          2 EMKIGIDAGGTLTKIVYLEEKK   23 (277)
T ss_pred             CceEEEEeCcccEEEEEEcCCC
Confidence            4678999999999999986544

>TIGR02627 rhamnulo_kin rhamnulokinase

Probab=89.65  E-value=0.2  Score=30.52  Aligned_cols=16  Identities=25%  Similarity=0.362  Sum_probs=14.5

Q ss_pred             EEEeCCcceEEEEEEe
Q psy17247          6 FGLYLGNSSASIGICR   21 (41)
Q Consensus         6 iGiD~GTtns~va~~~   21 (41)
                      +|||+|||++-++++.
T Consensus         1 ~aiD~Gtt~~k~~l~~   16 (454)
T TIGR02627         1 VAVDLGASSGRVMLAS   16 (454)
T ss_pred             CcEeccCCchheEEEE
Confidence            5899999999999984

This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.

>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon

Probab=89.46  E-value=0.77  Score=29.24  Aligned_cols=17  Identities=18%  Similarity=0.382  Sum_probs=13.9

Q ss_pred             eEEEEeCCcceEEEEEE
Q psy17247          4 TVFGLYLGNSSASIGIC   20 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~   20 (41)
                      ..+|||+|||.+.+-+-
T Consensus         4 ~SVGIDIGTSTTQlvfS   20 (473)
T PF06277_consen    4 LSVGIDIGTSTTQLVFS   20 (473)
T ss_pred             EEEEEeecCCceeEEEE
Confidence            35899999999988653

The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.

>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional

Probab=89.39  E-value=0.9  Score=28.95  Aligned_cols=16  Identities=13%  Similarity=0.399  Sum_probs=13.5

Q ss_pred             EEEEeCCcceEEEEEE
Q psy17247          5 VFGLYLGNSSASIGIC   20 (41)
Q Consensus         5 ~iGiD~GTtns~va~~   20 (41)
                      .+|||+|||.+.+-+-
T Consensus         8 SVGIDIGTsTTqlvfS   23 (475)
T PRK10719          8 SVGIDIGTTTTQVIFS   23 (475)
T ss_pred             EEEEeccCceEEEEEE
Confidence            5799999999998653

>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D

Probab=89.13  E-value=1.2  Score=26.24  Aligned_cols=18  Identities=11%  Similarity=0.241  Sum_probs=16.4

Q ss_pred             eEEEEeCCcceEEEEEEe
Q psy17247          4 TVFGLYLGNSSASIGICR   21 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~   21 (41)
                      ..+|||.|.|.+-+.+.+
T Consensus         2 ~~~GIDiGStttK~Vlid   19 (262)
T TIGR02261         2 ITAGIDIGTGAIKTVLFE   19 (262)
T ss_pred             eEEEEEcCcccEEEEEEe
Confidence            468999999999999997

This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.

>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]

Probab=88.95  E-value=0.77  Score=27.10  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=17.9

Q ss_pred             ceEEEEeCCcceEEEEEE-eCCeE
Q psy17247          3 KTVFGLYLGNSSASIGIC-RDGKV   25 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~-~~~~~   25 (41)
                      +..+|.||||.+-+.-+. +++++
T Consensus        29 k~~vGVDLGT~~iV~~vlD~d~~P   52 (277)
T COG4820          29 KLWVGVDLGTCDIVSMVLDRDGQP   52 (277)
T ss_pred             ceEEEeecccceEEEEEEcCCCCe
Confidence            457899999999887777 45554

>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products

Probab=88.69  E-value=1.8  Score=23.49  Aligned_cols=26  Identities=12%  Similarity=0.332  Sum_probs=21.0

Q ss_pred             eEEEEeCCcceEEEEEEe--CCeEEEEe
Q psy17247          4 TVFGLYLGNSSASIGICR--DGKVEILA   29 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~--~~~~~ii~   29 (41)
                      .+++||.|+-|.+..+.+  ++.++++.
T Consensus         2 ii~sIDiGikNlA~~iie~~~~~i~~~~   29 (143)
T PF04848_consen    2 IILSIDIGIKNLAYCIIEFEGNKIRVID   29 (143)
T ss_pred             eEEEEecCCCceeEEEEEcCCCeEEEEE
Confidence            689999999999999985  45566554

; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination

>PRK13324 pantothenate kinase; Reviewed

Probab=88.34  E-value=1  Score=26.22  Aligned_cols=20  Identities=25%  Similarity=0.504  Sum_probs=17.7

Q ss_pred             EEEEeCCcceEEEEEEeCCe
Q psy17247          5 VFGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~~~~   24 (41)
                      .+.||.|+||..++++++++
T Consensus         2 iL~iDiGNT~ik~gl~~~~~   21 (258)
T PRK13324          2 LLVMDMGNSHIHIGVFDGDR   21 (258)
T ss_pred             EEEEEeCCCceEEEEEECCE
Confidence            68899999999999998654

>TIGR00671 baf pantothenate kinase, type III

Probab=88.31  E-value=1.1  Score=25.81  Aligned_cols=19  Identities=16%  Similarity=0.270  Sum_probs=17.1

Q ss_pred             EEEeCCcceEEEEEEeCCe
Q psy17247          6 FGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         6 iGiD~GTtns~va~~~~~~   24 (41)
                      +.||.|+||..+|++++++
T Consensus         2 L~iDiGNT~i~~g~~~~~~   20 (243)
T TIGR00671         2 LLIDVGNTRIVFALNSGNK   20 (243)
T ss_pred             EEEEECCCcEEEEEEECCE
Confidence            6799999999999998775

This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.

>KOG2517|consensus

Probab=88.27  E-value=0.78  Score=29.48  Aligned_cols=19  Identities=26%  Similarity=0.415  Sum_probs=16.9

Q ss_pred             ceEEEEeCCcceEEEEEEe
Q psy17247          3 KTVFGLYLGNSSASIGICR   21 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~   21 (41)
                      ..++|||.|||.+..++++
T Consensus         6 ~~~~gIDvGTtSaR~~v~~   24 (516)
T KOG2517|consen    6 PVVLGIDVGTTSARALVFN   24 (516)
T ss_pred             ceEEEEEcCCCceEEEEEe
Confidence            4578999999999999986

>TIGR01174 ftsA cell division protein FtsA

Probab=87.60  E-value=1.4  Score=26.22  Aligned_cols=25  Identities=24%  Similarity=0.557  Sum_probs=19.0

Q ss_pred             EEEEeCCcceEEEEEEe--C-CeEEEEe
Q psy17247          5 VFGLYLGNSSASIGICR--D-GKVEILA   29 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~--~-~~~~ii~   29 (41)
                      ++|||+||++-++.+.+  + ++++++.
T Consensus         2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~   29 (371)
T TIGR01174         2 IVGLDIGTSKICAIVAEVLEDGELNIIG   29 (371)
T ss_pred             EEEEEeccceEEEEEEEEcCCCCEEEEE
Confidence            57999999999988763  3 4477664

This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.

>PF13941 MutL: MutL protein

Probab=86.98  E-value=1.3  Score=28.02  Aligned_cols=25  Identities=16%  Similarity=0.436  Sum_probs=21.7

Q ss_pred             EEEEeCCcceEEEEEEe--CCeEEEEe
Q psy17247          5 VFGLYLGNSSASIGICR--DGKVEILA   29 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~--~~~~~ii~   29 (41)
                      ++-+|||.|+.-+..++  .++.+++.
T Consensus         2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig   28 (457)
T PF13941_consen    2 VLVVDIGSTYTKVTLFDLVDGEPRLIG   28 (457)
T ss_pred             EEEEEeCCcceEEeEEeccCCccEEEE
Confidence            57899999999999998  77888775

>PRK09698 D-allose kinase; Provisional

Probab=86.84  E-value=1.5  Score=25.19  Aligned_cols=24  Identities=17%  Similarity=0.473  Sum_probs=19.9

Q ss_pred             CCceEEEEeCCcceEEEEEEe-CCe
Q psy17247          1 MSKTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      |...++|||+|-|+..+++.+ +++
T Consensus         2 ~~~~~lgidig~t~i~~~l~d~~g~   26 (302)
T PRK09698          2 QKNVVLGIDMGGTHIRFCLVDAEGE   26 (302)
T ss_pred             CccEEEEEEcCCcEEEEEEEcCCCC
Confidence            567899999999999999985 443

>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF

Probab=86.59  E-value=0.67  Score=24.40  Aligned_cols=17  Identities=24%  Similarity=0.264  Sum_probs=14.9

Q ss_pred             EEEeCCcceEEEEEEeC
Q psy17247          6 FGLYLGNSSASIGICRD   22 (41)
Q Consensus         6 iGiD~GTtns~va~~~~   22 (41)
                      +|||+|+..+-+|+.+.
T Consensus         1 laiD~G~kriGvA~~d~   17 (130)
T TIGR00250         1 LGLDFGTKSIGVAGQDI   17 (130)
T ss_pred             CeEccCCCeEEEEEECC
Confidence            58999999999998754

This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.

>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length

Probab=86.54  E-value=1.4  Score=24.39  Aligned_cols=24  Identities=21%  Similarity=0.302  Sum_probs=20.2

Q ss_pred             CceEEEEeCCcce-----EEEEEEeCCeE
Q psy17247          2 SKTVFGLYLGNSS-----ASIGICRDGKV   25 (41)
Q Consensus         2 ~~~~iGiD~GTtn-----s~va~~~~~~~   25 (41)
                      ++.++.|||-|++     .-.|++++++.
T Consensus         1 ~~~~LslD~STs~~~~~gTG~A~~~~~~~   29 (159)
T PF07066_consen    1 MKKVLSLDFSTSSKKGEGTGWAFFKGSDL   29 (159)
T ss_pred             CCeeEEEEEecccCCCCCceeEEecCCeE
Confidence            3578999999999     99999987764

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.

>COG4020 Uncharacterized protein conserved in archaea [Function unknown]

Probab=86.51  E-value=1.3  Score=26.79  Aligned_cols=28  Identities=21%  Similarity=0.249  Sum_probs=21.9

Q ss_pred             CCceEEEEeCCcceEEEEEEeCCeEEEE
Q psy17247          1 MSKTVFGLYLGNSSASIGICRDGKVEIL   28 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~~~~~~ii   28 (41)
                      |....+|||-|||--..+++++.+...+
T Consensus         1 ~~m~fVGiDHGTsgi~~ai~d~e~~~~F   28 (332)
T COG4020           1 MTMMFVGIDHGTSGIKFAIYDGEKDPEF   28 (332)
T ss_pred             CceEEEeecCCCcceEEEEEcCCCCceE
Confidence            5678999999999999999974443333

>COG0554 GlpK Glycerol kinase [Energy production and conversion]

Probab=86.08  E-value=0.67  Score=29.70  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=18.3

Q ss_pred             ceEEEEeCCcceEEEEEE-eCCe
Q psy17247          3 KTVFGLYLGNSSASIGIC-RDGK   24 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~-~~~~   24 (41)
                      +.++.||-|||+|-..++ ++++
T Consensus         5 ~yIlAiDqGTTssRaivfd~~g~   27 (499)
T COG0554           5 KYILAIDQGTTSSRAIVFDEDGN   27 (499)
T ss_pred             cEEEEEecCCcceeEEEECCCCC
Confidence            578999999999999998 4443

>smart00268 ACTIN Actin

Probab=85.90  E-value=0.93  Score=26.76  Aligned_cols=23  Identities=9%  Similarity=0.202  Sum_probs=18.0

Q ss_pred             eEEEEeCCcceEEEEEEeCCeEE
Q psy17247          4 TVFGLYLGNSSASIGICRDGKVE   26 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~~~~~   26 (41)
                      ..+.||+|+.++.+++..+..+.
T Consensus         2 ~~iviD~Gs~~~k~G~~~~~~P~   24 (373)
T smart00268        2 PAIVIDNGSGTIKAGFAGEDEPQ   24 (373)
T ss_pred             CeEEEECCCCcEEEeeCCCCCCc
Confidence            46899999999999987554443

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily

>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family

Probab=85.77  E-value=1.1  Score=29.95  Aligned_cols=18  Identities=28%  Similarity=0.455  Sum_probs=16.4

Q ss_pred             eEEEEeCCcceEEEEEEe
Q psy17247          4 TVFGLYLGNSSASIGICR   21 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~   21 (41)
                      .+||+|+||+..-+|+.+
T Consensus         2 y~LGLDiGt~SvGWAVv~   19 (805)
T TIGR01865         2 YILGLDIGIASVGWAIVE   19 (805)
T ss_pred             ceeEEeecccceeEEEEe
Confidence            578999999999999985

CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.

>PLN02914 hexokinase

Probab=85.68  E-value=0.93  Score=28.81  Aligned_cols=18  Identities=17%  Similarity=0.218  Sum_probs=16.1

Q ss_pred             ceEEEEeCCcceEEEEEE
Q psy17247          3 KTVFGLYLGNSSASIGIC   20 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~   20 (41)
                      ...+.+|||-||.-|+..
T Consensus        95 G~fLAlDlGGTNfRV~~V  112 (490)
T PLN02914         95 GLFYALDLGGTNFRVLRV  112 (490)
T ss_pred             eEEEEEecCCceEEEEEE
Confidence            358999999999999987

>PRK15080 ethanolamine utilization protein EutJ; Provisional

Probab=85.68  E-value=1.5  Score=25.29  Aligned_cols=20  Identities=20%  Similarity=0.338  Sum_probs=16.3

Q ss_pred             CceEEEEeCCcceEEEEEEe
Q psy17247          2 SKTVFGLYLGNSSASIGICR   21 (41)
Q Consensus         2 ~~~~iGiD~GTtns~va~~~   21 (41)
                      ...++|||+||+.-++-+.+
T Consensus        23 ~~~~~~iDiGSssi~~vv~~   42 (267)
T PRK15080         23 SPLKVGVDLGTANIVLAVLD   42 (267)
T ss_pred             CCEEEEEEccCceEEEEEEc
Confidence            35688999999999987763

>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway

Probab=85.67  E-value=2.2  Score=23.61  Aligned_cols=21  Identities=14%  Similarity=0.321  Sum_probs=16.9

Q ss_pred             EEEEeCCcceEEEEEEeCCeE
Q psy17247          5 VFGLYLGNSSASIGICRDGKV   25 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~~~~~   25 (41)
                      ++-||.|+|+.-++++++++.
T Consensus         1 ~L~iDiGNT~ik~~~~~~~~~   21 (206)
T PF03309_consen    1 ILLIDIGNTRIKWALFDGDKL   21 (206)
T ss_dssp             EEEEEE-SSEEEEEEEETTEE
T ss_pred             CEEEEECCCeEEEEEEECCEE
Confidence            467999999999999987753

CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.

>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15

Probab=85.46  E-value=1.4  Score=27.49  Aligned_cols=20  Identities=15%  Similarity=0.335  Sum_probs=17.8

Q ss_pred             eEEEEeCCcceEEEEEEeCC
Q psy17247          4 TVFGLYLGNSSASIGICRDG   23 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~~   23 (41)
                      ..+|||.|.|.+-+.+.+++
T Consensus       145 ~~lGIDiGSTttK~Vl~dd~  164 (404)
T TIGR03286       145 LTLGIDSGSTTTKAVVMEDN  164 (404)
T ss_pred             EEEEEEcChhheeeEEEcCC
Confidence            57999999999999998765

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.

>PLN02362 hexokinase

Probab=85.24  E-value=1.5  Score=28.05  Aligned_cols=18  Identities=22%  Similarity=0.266  Sum_probs=16.2

Q ss_pred             ceEEEEeCCcceEEEEEE
Q psy17247          3 KTVFGLYLGNSSASIGIC   20 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~   20 (41)
                      ..++.+|||-||--|+..
T Consensus        95 G~fLAlDlGGTNfRV~~V  112 (509)
T PLN02362         95 GTYYALDLGGTNFRVLRV  112 (509)
T ss_pred             eeEEEEecCCceEEEEEE
Confidence            358999999999999987

>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional

Probab=84.21  E-value=1  Score=28.89  Aligned_cols=18  Identities=11%  Similarity=0.117  Sum_probs=16.6

Q ss_pred             eEEEEeCCcceEEEEEEe
Q psy17247          4 TVFGLYLGNSSASIGICR   21 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~   21 (41)
                      +++|+|+|-||..+|+++
T Consensus        19 ~~L~iDIGGT~ir~al~~   36 (638)
T PRK14101         19 PRLLADVGGTNARFALET   36 (638)
T ss_pred             CEEEEEcCchhheeeeec
Confidence            589999999999999994

>TIGR01175 pilM type IV pilus assembly protein PilM

Probab=84.14  E-value=3.7  Score=23.96  Aligned_cols=26  Identities=12%  Similarity=0.353  Sum_probs=20.0

Q ss_pred             ceEEEEeCCcceEEEEEEe--CCeEEEE
Q psy17247          3 KTVFGLYLGNSSASIGICR--DGKVEIL   28 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~--~~~~~ii   28 (41)
                      ..++|||+|++.-.++...  +++.++.
T Consensus         3 ~~~vgiDIg~~~Ik~v~~~~~~~~~~v~   30 (348)
T TIGR01175         3 SLLVGIDIGSTSVKVAQLKRSGDRYKLE   30 (348)
T ss_pred             CcEEEEEeccCeEEEEEEEecCCceEEE
Confidence            4589999999999998874  5555543

This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.

>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]

Probab=84.13  E-value=2.7  Score=26.38  Aligned_cols=21  Identities=24%  Similarity=0.453  Sum_probs=19.0

Q ss_pred             eEEEEeCCcceEEEEEEeCCe
Q psy17247          4 TVFGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~~~   24 (41)
                      ..+|||.|.|..-+.+.+++.
T Consensus       136 ~~LGID~GSTtTK~VLm~d~~  156 (396)
T COG1924         136 YTLGIDSGSTTTKAVLMEDGK  156 (396)
T ss_pred             EEEEEecCCcceeEEEEeCCC
Confidence            589999999999999998776

>PRK12408 glucokinase; Provisional

Probab=84.04  E-value=1.1  Score=26.62  Aligned_cols=18  Identities=6%  Similarity=0.231  Sum_probs=16.4

Q ss_pred             eEEEEeCCcceEEEEEEe
Q psy17247          4 TVFGLYLGNSSASIGICR   21 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~   21 (41)
                      .++++|+|-||...++++
T Consensus        17 ~~L~~DIGGT~i~~al~d   34 (336)
T PRK12408         17 SFVAADVGGTHVRVALVC   34 (336)
T ss_pred             cEEEEEcChhhhheeEEe
Confidence            379999999999999995

>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]

Probab=83.74  E-value=3.8  Score=25.68  Aligned_cols=26  Identities=23%  Similarity=0.447  Sum_probs=20.1

Q ss_pred             eEEEEeCCcceEEEEEE--eCC-eEEEEe
Q psy17247          4 TVFGLYLGNSSASIGIC--RDG-KVEILA   29 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~--~~~-~~~ii~   29 (41)
                      .++|+|+||+.-++-+.  .++ +.+++-
T Consensus         7 ~iv~LDIGTskV~~lVge~~~~g~i~iig   35 (418)
T COG0849           7 LIVGLDIGTSKVKALVGELRPDGRLNIIG   35 (418)
T ss_pred             eEEEEEccCcEEEEEEEEEcCCCeEEEEe
Confidence            58899999999888775  344 677775

>PF01385 OrfB_IS605: Probable transposase; InterPro: IPR001959 This entry represents a conserved region of a probable transposase family, which is found in a number of uncharacterised bacterial proteins

Probab=83.09  E-value=1  Score=24.40  Aligned_cols=21  Identities=29%  Similarity=0.379  Sum_probs=16.6

Q ss_pred             ceEEEEeCCcceEEEEEEeCC
Q psy17247          3 KTVFGLYLGNSSASIGICRDG   23 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~   23 (41)
                      ..++|||+|-.+.+++.-.++
T Consensus       124 ~~~vgVDlGi~~~a~~~~~~~  144 (227)
T PF01385_consen  124 EKVVGVDLGIKNLATVSSGDG  144 (227)
T ss_pred             ceeeeeccccceeeccccccc
Confidence            468999999999987765443

A novel insertion sequence (IS)-like element of the Bacillus PS3 (Thermophilic bacterium PS-3) that promotes expression of the alanine carrier protein-encoding gene belongs to this entry, including IS891 [], IS1136 [], and IS1341 []. More information about these proteins can be found at Protein of the Month: Transposase [].

>COG2410 Predicted nuclease (RNAse H fold) [General function prediction only]

Probab=82.34  E-value=2.3  Score=24.03  Aligned_cols=27  Identities=19%  Similarity=0.440  Sum_probs=21.9

Q ss_pred             eEEEEeCCcce-EEEEEEeCCeEEEEeC
Q psy17247          4 TVFGLYLGNSS-ASIGICRDGKVEILAN   30 (41)
Q Consensus         4 ~~iGiD~GTtn-s~va~~~~~~~~ii~~   30 (41)
                      ...|||+|--. +++|++.+++.+++..
T Consensus         2 my~GIDla~k~~tavavl~~~~~~~i~~   29 (178)
T COG2410           2 MYAGIDLAVKRSTAVAVLIEGRIEIISA   29 (178)
T ss_pred             cccccccccCCCceEEEEECCEEEEEEc
Confidence            57899997544 4899999999999874

>PRK13311 N-acetyl-D-glucosamine kinase; Provisional

Probab=82.06  E-value=2.4  Score=23.99  Aligned_cols=20  Identities=15%  Similarity=0.522  Sum_probs=17.0

Q ss_pred             EEEEeCCcceEEEEEEe-CCe
Q psy17247          5 VFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~-~~~   24 (41)
                      ++|||+|.|+..+++.+ +++
T Consensus         2 ~lgidiggt~i~~~l~d~~g~   22 (256)
T PRK13311          2 YYGFDMGGTKIELGVFDENLQ   22 (256)
T ss_pred             EEEEEECCCcEEEEEECCCCC
Confidence            69999999999999984 443

>PTZ00288 glucokinase 1; Provisional

Probab=81.15  E-value=2.3  Score=26.38  Aligned_cols=19  Identities=26%  Similarity=0.595  Sum_probs=16.8

Q ss_pred             eEEEEeCCcceEEEEEEeC
Q psy17247          4 TVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~   22 (41)
                      .++|+|.|-||+.+++++.
T Consensus        27 ~~~~~DiGgt~~R~~~~~~   45 (405)
T PTZ00288         27 IFVGCDVGGTNARVGFARE   45 (405)
T ss_pred             eEEEEEecCCceEEEEEec
Confidence            4789999999999999854

>PLN02405 hexokinase

Probab=81.02  E-value=1.8  Score=27.59  Aligned_cols=18  Identities=17%  Similarity=0.218  Sum_probs=16.0

Q ss_pred             ceEEEEeCCcceEEEEEE
Q psy17247          3 KTVFGLYLGNSSASIGIC   20 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~   20 (41)
                      ..++.+|||-||--|...
T Consensus        95 G~flAlDlGGTNfRV~~V  112 (497)
T PLN02405         95 GLFYALDLGGTNFRVLRV  112 (497)
T ss_pred             eeEEEEecCCceEEEEEE
Confidence            358999999999999987

>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton

Probab=80.51  E-value=1.7  Score=25.64  Aligned_cols=26  Identities=8%  Similarity=0.178  Sum_probs=18.7

Q ss_pred             EEEEeCCcceEEEEEEeCCe-EEEEeC
Q psy17247          5 VFGLYLGNSSASIGICRDGK-VEILAN   30 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~~~~-~~ii~~   30 (41)
                      .+.||+|+.+..+++..+.. .-++++
T Consensus         1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps   27 (371)
T cd00012           1 AVVIDNGSGTIKAGFAGEDAPRVVFPS   27 (371)
T ss_pred             CEEEECCCCeEEEEeCCCCCCceEeec
Confidence            37899999999999885543 334443

Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.

>PLN02596 hexokinase-like

Probab=80.28  E-value=2.1  Score=27.31  Aligned_cols=18  Identities=22%  Similarity=0.176  Sum_probs=16.0

Q ss_pred             ceEEEEeCCcceEEEEEE
Q psy17247          3 KTVFGLYLGNSSASIGIC   20 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~   20 (41)
                      ...+.+|||-||--|+..
T Consensus        96 G~yLAlDlGGTNfRV~~V  113 (490)
T PLN02596         96 GLYYGLNLRGSNFLLLRA  113 (490)
T ss_pred             eEEEEEeeCCceEEEEEE
Confidence            357999999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	41
3qfu_A	394	Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE		3e-05
3qfp_A	390	Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D		3e-05
3iuc_A	408	Crystal Structure Of The Human 70kda Heat Shock Pro		4e-05
3ldl_A	384	Crystal Structure Of Human Grp78 (70kda Heat Shock		4e-05
1ba1_A	386	Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi		3e-04
4gni_A	409	Structure Of The Ssz1 Atpase Bound To Atp And Magne		3e-04
1ngg_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		5e-04
1ngh_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		5e-04
3fe1_A	403	Crystal Structure Of The Human 70kda Heat Shock Pro		5e-04
1bup_A	386	T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot		5e-04
3i33_A	404	Crystal Structure Of The Human 70kda Heat Shock Pro		6e-04
1s3x_A	382	The Crystal Structure Of The Human Hsp70 Atpase Dom		6e-04
1yuw_A	554	Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214		6e-04
3cqx_A	386	Chaperone Complex Length = 386		6e-04
3c7n_B	554	Structure Of The Hsp110:hsc70 Nucleotide Exchange C		6e-04
1kax_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71m		6e-04
1kay_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71a		6e-04
1nga_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		6e-04
1kaz_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71e		6e-04
1ats_A	386	Threonine 204 Of The Chaperone Protein Hsc70 Influe		6e-04
1ngb_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		6e-04
1atr_A	386	Threonine 204 Of The Chaperone Protein Hsc70 Influe		6e-04
2qwn_A	394	Crystal Structure Of Disulfide-Bond-Crosslinked Com		6e-04
1ba0_A	386	Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi		6e-04
1ngc_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		6e-04
1qqo_A	378	E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		6e-04
1nge_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		6e-04
2qw9_B	394	Crystal Structure Of Bovine Hsc70 (1-394aa)in The A		6e-04
1qqm_A	378	D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		6e-04
1hpm_A	386	How Potassium Affects The Activity Of The Molecular		6e-04
1ngd_A	386	Structural Basis Of The 70-kilodalton Heat Shock Co		6e-04
1ngf_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		6e-04
1qqn_A	378	D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		6e-04
3c7n_A	668	Structure Of The Hsp110:hsc70 Nucleotide Exchange C		8e-04
2qxl_A	658	Crystal Structure Analysis Of Sse1, A Yeast Hsp110		8e-04
2bup_A	381	T13g Mutant Of The Atpase Fragment Of Bovine Hsc70		8e-04
1hjo_A	380	Atpase Domain Of Human Heat Shock 70kda Protein 1 L		9e-04
3d2f_B	382	Crystal Structure Of A Complex Of Sse1p And Hsp70 L		9e-04
3d2f_A	675	Crystal Structure Of A Complex Of Sse1p And Hsp70 L		9e-04
3d2e_A	675	Crystal Structure Of A Complex Of Sse1p And Hsp70,		9e-04
2e8a_A	391	Crystal Structure Of The Human Hsp70 Atpase Domain		9e-04
2e88_A	391	Crystal Structure Of The Human Hsp70 Atpase Domain		9e-04
3jxu_A	409	Crystal Structure Of The Human 70kda Heat Shock Pro		9e-04
3d2e_B	382	Crystal Structure Of A Complex Of Sse1p And Hsp70,		9e-04
3a8y_A	392	Crystal Structure Of The Complex Between The Bag5 B		9e-04

>pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          TV G+ LG + + + + ++GK EILANE G+R+TP+ V
Sbjct: 15 TVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYV 52

>pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 30/38 (78%)
Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          TV G+ LG + + +G+ ++G+VEI+AN+ G+R+TP+ V
Sbjct: 27 TVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYV 64

>pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 30/38 (78%)
Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          TV G+ LG + + +G+ ++G+VEI+AN+ G+R+TP+ V
Sbjct: 6  TVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYV 43

>pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7  GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 8  GIDLGTTYSKVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 3  KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          + V G+  GNS++SI    D K E++ANE GDR  P ++
Sbjct: 13 RVVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTIL 51

>pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGISLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGINLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7  GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          G+ LG + + +G+ + G+VEILAN+ G+R TP+ V
Sbjct: 28 GIDLGTTYSCVGVFQQGRVEILANDQGNRTTPSYV 62

>pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG++ + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 1  MSKTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
           S    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 21 QSMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 61

>pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 7  GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          G+ LG + + IG+ + GKVEI+AN+ G+R TP+ V
Sbjct: 8  GIDLGTTYSCIGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|3CQX|A Chain A, Chaperone Complex Length = 386

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 6  MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 47

>pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7  GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 8  GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7  GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 5  GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 39

>pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|2QW9|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo State Length = 394

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7  GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 5  GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 39

>pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7  GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 5  GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 39

>pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          T FGL LGN+++ + + R+  ++I+ NE  +R TP+VV
Sbjct: 5  TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVV 42

>pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          T FGL LGN+++ + + R+  ++I+ NE  +R TP+VV
Sbjct: 2  TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVV 39

>pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGIDLGGTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7  GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 6  GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 40

>pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7  GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 8  GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          T FGL LGN+++ + + R+  ++I+ NE  +R TP+VV
Sbjct: 3  TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVV 40

>pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          T FGL LGN+++ + + R+  ++I+ NE  +R TP+VV
Sbjct: 3  TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVV 40

>pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7  GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 11 GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 45

>pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7  GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 11 GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 45

>pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7  GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 30 GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 64

>pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7  GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 8  GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7  GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 12 GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 46

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	41
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	7e-09
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	1e-06
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	3e-06
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	4e-06

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675

 Score = 47.3 bits (113), Expect = 7e-09
 Identities = 18/41 (43%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 1  MSKTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MS T FGL LGN+++ + + R+  ++I+ NE  +R TP+VV
Sbjct: 1  MS-TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVV 40

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554

 Score = 41.0 bits (97), Expect = 1e-06
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404

 Score = 39.8 bits (94), Expect = 3e-06
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
             G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 24 PAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	41
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	99.57
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	99.55
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	99.54
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	99.52
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	99.52
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	99.48
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	99.48
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	99.44
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	99.41
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	98.51
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	97.82
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	97.6
3hz6_A	511	Xylulokinase; xylulose, structural genomic, chromo	97.02
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	96.99
3h6e_A	482	Carbohydrate kinase, FGGY; novosphingobium aromati	96.99
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	96.92
2zgy_A	320	Plasmid segregation protein PARM; plasmid partitio	96.91
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	96.9
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	96.9
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	96.72
1hux_A	270	Activator of (R)-2-hydroxyglutaryl-COA dehydratase	96.51
3ll3_A	504	Gluconate kinase; xylulose kinase, nysgx, ATP, ADP	96.43
1nu0_A	138	Hypothetical protein YQGF; structural genomics, st	96.4
3ezw_A	526	Glycerol kinase; glycerol metabolism, allosteric r	96.28
3l0q_A	554	Xylulose kinase; xlylulose kinase, SGX, PSI, struc	96.27
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	96.22
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	96.21
3i8b_A	515	Xylulose kinase; strain ATCC 15703 / DSM 20083, 11	96.21
3jvp_A	572	Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su	96.15
1vhx_A	150	Putative holliday junction resolvase; structural g	96.11
3ifr_A	508	Carbohydrate kinase, FGGY; xylulose kinase, SGX, s	96.04
4bc3_A	538	Xylulose kinase; transferase, glucuronate xyluloki	96.01
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	96.0
3djc_A	266	Type III pantothenate kinase; structural genomics,	95.76
3bex_A	249	Type III pantothenate kinase; actin-like fold, ATP	95.69
1hjr_A	158	Holliday junction resolvase (RUVC); site-specific	95.56
2e2o_A	299	Hexokinase; acetate and sugar kinases, HSP70, acti	95.47
2uyt_A	489	Rhamnulokinase; rhamnose degradation, IN-LINE phos	95.46
1zc6_A	305	Probable N-acetylglucosamine kinase; NESG, Q7NU07_	95.43
2ch5_A	347	NAGK protein; transferase, N-acetylglucosamine, gl	95.38
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	95.28
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	95.2
2itm_A	484	Xylulose kinase, xylulokinase; ATPase, FGGY kinase	94.98
2qm1_A	326	Glucokinase; alpha-beta structure, putative helix-	94.81
2fsj_A	346	Hypothetical protein TA0583; actin homologs, archa	94.68
2f9w_A	271	Pantothenate kinase; COAA, transferase; HET: PAU;	94.65
4ep4_A	166	Crossover junction endodeoxyribonuclease RUVC; res	94.4
1iv0_A	98	Hypothetical protein; rnaseh-like, YQGF, structura	94.0
1zbs_A	291	Hypothetical protein PG1100; alpha-beta protein.,	93.48
3nuw_A	295	2-OXO-3-deoxygalactonate kinase; structural genomi	93.46
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	93.43
3vgl_A	321	Glucokinase; ROK family, transferase; HET: BGC ANP	93.15
2h3g_X	268	Biosynthetic protein; pantothenate kinase, anthrax	92.74
1nbw_A	607	Glycerol dehydratase reactivase alpha subunit; mol	91.78
1zxo_A	291	Conserved hypothetical protein Q8A1P1; NESG, BTR25	91.74
1saz_A	381	Probable butyrate kinase 2; askha (acetate and sug	91.37
3vov_A	302	Glucokinase, hexokinase; ROK, sugar kinase, transf	91.33
1sz2_A	332	Glucokinase, glucose kinase; ATP-dependent, glucos	90.91
2ews_A	287	Pantothenate kinase; PANK, structural genomics, st	90.63
4htl_A	297	Beta-glucoside kinase; structural genomics, sugar	90.58
3htv_A	310	D-allose kinase, allokinase; NP_418508.1, structur	90.5
2yhw_A	343	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N	89.9
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	89.21
3r8e_A	321	Hypothetical sugar kinase; ribonuclease H-like mot	89.15
1bdg_A	451	Hexokinase; phosphotransferase; HET: GLC; 2.60A {S	88.84
2ivn_A	330	O-sialoglycoprotein endopeptidase; UP1 keops compl	88.74
2q2r_A	373	Glucokinase 1, putative; ATPase hexose kinase fami	88.5
3mcp_A	366	Glucokinase; structural genomics, joint center for	88.23
2aa4_A	289	Mannac kinase, putative N-acetylmannosamine kinase	88.22
2yhx_A	457	Hexokinase B; transferase(phosphoryl,alcohol accep	88.16
3epq_A	302	Putative fructokinase; SCRK, ADP binding, PSI2, MC	88.07
2gup_A	292	ROK family protein; sugar kinase, streptococcus pn	87.55
3t69_A	330	Putative 2-dehydro-3-deoxygalactonokinase; structu	87.1
4a2a_A	419	Cell division protein FTSA, putative; cell cycle,	86.91
4db3_A	327	Glcnac kinase, N-acetyl-D-glucosamine kinase; stru	86.63
1z6r_A	406	MLC protein; transcriptional repressor, ROK family	86.09
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	86.08
1woq_A	267	Inorganic polyphosphate/ATP-glucomannokinase; tran	86.07
2hoe_A	380	N-acetylglucosamine kinase; TM1224, structural gen	85.85
2ap1_A	327	Putative regulator protein; zinc binding protein,	84.76
3o8m_A	485	Hexokinase; rnaseh-like fold, glycolysis, glucose	84.57
3mdq_A	315	Exopolyphosphatase; structural genomics, joint cen	84.27
1cza_N	917	Hexokinase type I; structurally homologous domains	83.44
1cza_N	917	Hexokinase type I; structurally homologous domains	82.7
2d0o_A	610	DIOL dehydratase-reactivating factor large subunit	82.36
1z05_A	429	Transcriptional regulator, ROK family; structural	82.01
3lm2_A	226	Putative kinase; structural genomics, joint center	81.7
4dkw_A	211	Large terminase protein; DNA-packaging, small term	81.36

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=99.57  E-value=2.5e-15  Score=92.89  Aligned_cols=40  Identities=45%  Similarity=0.779  Sum_probs=36.6

Q ss_pred             CCceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          1 MSKTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      |+ .+|||||||||||||+++++++++++|++|++.+||+|
T Consensus         1 Mm-~~iGIDlGTtns~va~~~~g~~~ii~n~~g~r~tPS~V   40 (675)
T 3d2f_A            1 MS-TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVV   40 (675)
T ss_dssp             -C-CCEEEECCSSEEEEEEEETTEEEEECCTTSCSSEECCE
T ss_pred             CC-cEEEEEcCCCcEEEEEEECCeeEEEECCCCCcccceEE
Confidence            44 48999999999999999999999999999999999986

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=99.55  E-value=4.1e-15  Score=90.67  Aligned_cols=39  Identities=28%  Similarity=0.623  Sum_probs=37.1

Q ss_pred             ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      +.+|||||||||||||+++++++++++|++|++.+||+|
T Consensus         2 ~~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V   40 (605)
T 4b9q_A            2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSII   40 (605)
T ss_dssp             CCEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCE
T ss_pred             CcEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEE
Confidence            578999999999999999999999999999999999985

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=99.54  E-value=4.4e-15  Score=89.77  Aligned_cols=39  Identities=41%  Similarity=0.777  Sum_probs=36.6

Q ss_pred             ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      +.+||||||||||+||++++|++++++|++|++.+||+|
T Consensus         4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V   42 (554)
T 1yuw_A            4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV   42 (554)
T ss_dssp             CCCEEEEECSSEEEEEEECSSSEEECCCTTSCSEEECCE
T ss_pred             CCEEEEEeCcccEEEEEEECCEEEEEECCCCCeecceEE
Confidence            468999999999999999999999999999999999985

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=99.52  E-value=1.5e-14  Score=83.82  Aligned_cols=41  Identities=41%  Similarity=0.683  Sum_probs=37.0

Q ss_pred             CCceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          1 MSKTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      |++.++|||||||||+||++.++++++++++.|++.+||+|
T Consensus        11 m~~~vvGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v   51 (409)
T 4gni_A           11 GERVVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTIL   51 (409)
T ss_dssp             --CCEEEEEECSSEEEEEEEETTEEEEECCTTSCSSEECEE
T ss_pred             CCCcEEEEEcCCCeEEEEEEeCCceEEEECCCCCccCceEE
Confidence            56789999999999999999999999999999999999975

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=99.52  E-value=1e-14  Score=88.91  Aligned_cols=39  Identities=28%  Similarity=0.623  Sum_probs=35.6

Q ss_pred             ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      +.++||||||||||||++++|++++++|++|++.+||+|
T Consensus         2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V   40 (605)
T 2kho_A            2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSII   40 (605)
T ss_dssp             --CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEE
T ss_pred             CCEEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEE
Confidence            468999999999999999999999999999999999975

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=99.48  E-value=2.8e-14  Score=82.33  Aligned_cols=39  Identities=41%  Similarity=0.782  Sum_probs=36.7

Q ss_pred             ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      +.+||||||||||+||+++++++++++++.|++.+||+|
T Consensus        23 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v   61 (404)
T 3i33_A           23 MPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV   61 (404)
T ss_dssp             CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCE
T ss_pred             CCEEEEEcCCccEEEEEEECCeeEEEECCCCCcccceEE
Confidence            468999999999999999999999999999999999975

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=99.48  E-value=3.1e-14  Score=81.72  Aligned_cols=39  Identities=28%  Similarity=0.623  Sum_probs=35.8

Q ss_pred             ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      +.++|||||||||+||++++|+++++++++|++.+||+|
T Consensus         2 ~~~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v   40 (383)
T 1dkg_D            2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSII   40 (383)
T ss_dssp             -CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEE
T ss_pred             CcEEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEE
Confidence            468999999999999999999999999999999999975

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=99.44  E-value=1e-13  Score=82.90  Aligned_cols=39  Identities=31%  Similarity=0.724  Sum_probs=36.7

Q ss_pred             ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      +.++|||||||||+||++.++++++++|++|++.+||+|
T Consensus         2 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V   40 (509)
T 2v7y_A            2 SKIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVV   40 (509)
T ss_dssp             CCEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEE
T ss_pred             CCEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEE
Confidence            468999999999999999999999999999999999985

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=98.51  E-value=3.9e-08  Score=55.81  Aligned_cols=22  Identities=18%  Similarity=0.294  Sum_probs=16.7

Q ss_pred             CCceEEEEeCCcceEEEEEEeC
Q psy17247          1 MSKTVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~~   22 (41)
                      |++..+||||||+||++++..+
T Consensus         1 ~~~~~igIDlGT~~s~v~~~~~   22 (344)
T 1jce_A            1 MLRKDIGIDLGTANTLVFLRGK   22 (344)
T ss_dssp             ---CEEEEEECSSEEEEEETTT
T ss_pred             CCCceEEEEcCcCcEEEEECCC
Confidence            5678999999999999987543

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=97.82  E-value=1.6e-05  Score=44.01  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=18.7

Q ss_pred             eEEEEeCCcceEEEEEEeCCe
Q psy17247          4 TVFGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~~~   24 (41)
                      .++|||+|+|++.+++.++++
T Consensus         2 ~~lGID~GsT~tk~av~d~~~   22 (276)
T 4ehu_A            2 YTMGLDIGSTASKGVILKNGE   22 (276)
T ss_dssp             EEEEEEECSSCEEEEEEETTT
T ss_pred             eEEEEEcCccEEEEEEEECCC
Confidence            789999999999999997664

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=97.60  E-value=1.4e-05  Score=45.69  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=25.1

Q ss_pred             ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEe
Q psy17247          3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPA   39 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS   39 (41)
                      ..++|||+||+++++++.+++++++.  ..+...+||
T Consensus        13 ~~~vgiDiGt~~i~~~~~~~~~~~i~--~~g~~~~ps   47 (377)
T 2ych_A           13 VEALGLEIGASALKLVEVSGNPPALK--ALASRPTPP   47 (377)
T ss_dssp             CCCEEEEECSSEEEEEEEETTTTEEE--EEEEEECCT
T ss_pred             CceEEEEeCCCeEEEEEEeCCceEEE--EEEeEECCC
Confidence            35799999999999999987765542  234444554

>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*

Probab=97.02  E-value=0.00062  Score=40.94  Aligned_cols=24  Identities=13%  Similarity=0.311  Sum_probs=20.2

Q ss_pred             CCceEEEEeCCcceEEEEEEe-CCe
Q psy17247          1 MSKTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      |++.++|||+|||+..+++++ +|+
T Consensus         3 mm~~~lgIDiGtts~k~~l~d~~G~   27 (511)
T 3hz6_A            3 LAFYIATFDIGTTEVKAALADRDGG   27 (511)
T ss_dssp             CCCEEEEEEECSSEEEEEEECTTSC
T ss_pred             cccEEEEEEeCCCceEEEEECCCCC
Confidence            467899999999999999994 443

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*

Probab=96.99  E-value=0.0007  Score=40.52  Aligned_cols=24  Identities=21%  Similarity=0.372  Sum_probs=20.5

Q ss_pred             CCceEEEEeCCcceEEEEEEe-CCe
Q psy17247          1 MSKTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      |++.++|||+|||+..+++++ +|+
T Consensus         4 M~~~~lgIDiGtts~k~~l~d~~G~   28 (501)
T 3g25_A            4 MEKYILSIDQGTTSSRAILFNQKGE   28 (501)
T ss_dssp             CCCEEEEEEECSSEEEEEEECTTSC
T ss_pred             cccEEEEEEeCccceEEEEEcCCCC
Confidence            677899999999999999995 443

>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}

Probab=96.99  E-value=0.00043  Score=41.66  Aligned_cols=24  Identities=17%  Similarity=0.394  Sum_probs=17.4

Q ss_pred             CCceEEEEeCCcceEEEEEEe-CCe
Q psy17247          1 MSKTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      |++.++|||+|||+.-+++++ +|+
T Consensus         4 mm~~~lgIDiGTts~Ka~l~d~~G~   28 (482)
T 3h6e_A            4 STGATIVIDLGKTLSKVSLWDLDGR   28 (482)
T ss_dssp             ----CEEEEECSSEEEEEEECTTSC
T ss_pred             hhceEEEEEcCCCCeEEEEEECCCc
Confidence            567899999999999999995 443

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}

Probab=96.92  E-value=0.00091  Score=39.95  Aligned_cols=24  Identities=33%  Similarity=0.338  Sum_probs=20.5

Q ss_pred             CCceEEEEeCCcceEEEEEEe-CCe
Q psy17247          1 MSKTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      |++.++|||+|||+.-+++++ +|+
T Consensus         1 M~~~~lgiDiGtt~~k~~l~d~~g~   25 (497)
T 2zf5_O            1 MEKFVLSLDEGTTSARAIIFDRESN   25 (497)
T ss_dssp             CCCEEEEEEECSSEEEEEEECTTCC
T ss_pred             CCcEEEEEecCCchhEEEEECCCCC
Confidence            777899999999999999995 443

>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A

Probab=96.91  E-value=0.00093  Score=37.72  Aligned_cols=24  Identities=13%  Similarity=0.158  Sum_probs=18.6

Q ss_pred             EEEEeCCcceEEEEEE-eCCeEEEE
Q psy17247          5 VFGLYLGNSSASIGIC-RDGKVEIL   28 (41)
Q Consensus         5 ~iGiD~GTtns~va~~-~~~~~~ii   28 (41)
                      .+||||||+|+.+++. .+|.+..+
T Consensus         2 ~igiD~G~sntK~~~~~~~g~~~~~   26 (320)
T 2zgy_A            2 LVFIDDGSTNIKLQWQESDGTIKQH   26 (320)
T ss_dssp             EEEEEECSSEEEEEEECSSSCEEEE
T ss_pred             eEEEecCCccceEEEecCCCEEEEE
Confidence            7899999999999985 45654433

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A

Probab=96.90  E-value=0.00026  Score=41.13  Aligned_cols=28  Identities=11%  Similarity=0.195  Sum_probs=20.8

Q ss_pred             ceEEEEeCCcceEEEEEEeCCeEE-EEeC
Q psy17247          3 KTVFGLYLGNSSASIGICRDGKVE-ILAN   30 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~~~-ii~~   30 (41)
                      ...|+||+||+|+.+++..+..+. ++++
T Consensus         5 ~~~ivID~Gs~~~k~G~~~~~~p~~~~Ps   33 (418)
T 1k8k_A            5 LPACVVDCGTGYTKLGYAGNTEPQFIIPS   33 (418)
T ss_dssp             SCCEEEEECSSEEEEEETTCSSCSEEEES
T ss_pred             CCeEEEECCCCeEEEeeCCCCCCCCcCCc
Confidence            568999999999999987544443 4443

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}

Probab=96.90  E-value=0.00093  Score=40.30  Aligned_cols=24  Identities=17%  Similarity=0.252  Sum_probs=19.5

Q ss_pred             CCceEEEEeCCcceEEEEEEe-CCe
Q psy17247          1 MSKTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      |++.++|||+|||+..+++++ +|+
T Consensus        24 M~~~~lgIDiGtts~k~~l~d~~G~   48 (520)
T 4e1j_A           24 MGGYILAIDQGTTSTRAIVFDGNQK   48 (520)
T ss_dssp             CSCEEEEEEECSSEEEEEEECTTSC
T ss_pred             hhCeEEEEEeCCcceEEEEECCCCC
Confidence            345789999999999999994 443

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*

Probab=96.72  E-value=0.0014  Score=39.25  Aligned_cols=24  Identities=4%  Similarity=0.045  Sum_probs=19.3

Q ss_pred             CCceEEEEeCCcceEEEEEEe-CCe
Q psy17247          1 MSKTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      ||+.++|||+|||+..+++++ +|+
T Consensus         2 ~m~~~lgIDiGtT~~k~~l~d~~g~   26 (503)
T 2w40_A            2 SMNVILSIDQSTQSTKVFFYDEELN   26 (503)
T ss_dssp             -CEEEEEEEECSSEEEEEEEETTCC
T ss_pred             CccEEEEEEeCCcceEEEEECCCCC
Confidence            456789999999999999995 443

>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5

Probab=96.51  E-value=0.0042  Score=34.73  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=19.6

Q ss_pred             CCceEEEEeCCcceEEEEEEeC-Ce
Q psy17247          1 MSKTVFGLYLGNSSASIGICRD-GK   24 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~~-~~   24 (41)
                      |.+..+|||+|+|+..++++++ ++
T Consensus         1 m~~~~lGiD~Gst~~k~~l~d~~g~   25 (270)
T 1hux_A            1 MSIYTLGIDVGSTASKCIILKDGKE   25 (270)
T ss_dssp             -CCEEEEEEECSSEEEEEEEETTTE
T ss_pred             CCcEEEEEEeccceEEEEEEeCCCC
Confidence            5567899999999999999965 44

>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*

Probab=96.43  E-value=0.0029  Score=37.99  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=18.1

Q ss_pred             CC-ceEEEEeCCcceEEEEEEeC
Q psy17247          1 MS-KTVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         1 m~-~~~iGiD~GTtns~va~~~~   22 (41)
                      |+ +.++|||+|||+.-+++++.
T Consensus         1 M~m~~~lgIDiGtts~K~~l~d~   23 (504)
T 3ll3_A            1 MSLKYIIGMDVGTTATKGVLYDI   23 (504)
T ss_dssp             -CCEEEEEEEECSSEEEEEEEET
T ss_pred             CCCCEEEEEEecCCceEEEEEcC
Confidence            43 57899999999999999953

>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A

Probab=96.40  E-value=0.0056  Score=31.92  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=20.1

Q ss_pred             CCceEEEEeCCcceEEEEEEeC
Q psy17247          1 MSKTVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~~   22 (41)
                      |+..++|||+|+..+-||+-+.
T Consensus         1 ~~~~iLglD~G~kriGvAvsd~   22 (138)
T 1nu0_A            1 MSGTLMAFDFGTKSIGVAVGQR   22 (138)
T ss_dssp             CCCEEEEEECCSSEEEEEEEET
T ss_pred             CCCeEEEEEeCCCEEEEEEEcC
Confidence            7788999999999999999865

>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*

Probab=96.28  E-value=0.004  Score=37.52  Aligned_cols=22  Identities=23%  Similarity=0.306  Sum_probs=18.5

Q ss_pred             ceEEEEeCCcceEEEEEEe-CCe
Q psy17247          3 KTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      +.++|||+|||++-+.+++ +|+
T Consensus         4 kYvlgID~GTss~Ka~l~d~~G~   26 (526)
T 3ezw_A            4 KYIVALDQGTTSSRAVVMDHDAN   26 (526)
T ss_dssp             CEEEEEEECSSEEEEEEECTTCC
T ss_pred             eEEEEEEccccceeeeEEcCCCC
Confidence            5789999999999999994 443

>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*

Probab=96.27  E-value=0.0039  Score=37.76  Aligned_cols=22  Identities=27%  Similarity=0.555  Sum_probs=18.6

Q ss_pred             ceEEEEeCCcceEEEEEEe-CCe
Q psy17247          3 KTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      +.++|||+|||+..+++++ +|+
T Consensus         5 ~~~lgIDiGtts~ka~l~d~~G~   27 (554)
T 3l0q_A            5 SYFIGVDVGTGSARAGVFDLQGR   27 (554)
T ss_dssp             CEEEEEEECSSEEEEEEEETTSC
T ss_pred             cEEEEEEECcccEEEEEECCCCC
Confidence            4789999999999999995 443

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O

Probab=96.22  E-value=0.0047  Score=37.04  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=19.1

Q ss_pred             CceEEEEeCCcceEEEEEEe-CCe
Q psy17247          2 SKTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         2 ~~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      ++.++|||+|||+..+++++ +|+
T Consensus         4 ~~~~lgIDiGtts~k~~l~d~~G~   27 (506)
T 3h3n_X            4 KNYVMAIDQGTTSSRAIIFDRNGK   27 (506)
T ss_dssp             CCEEEEEEECSSEEEEEEEETTSC
T ss_pred             CCEEEEEEcCCCceEEEEECCCCC
Confidence            35789999999999999995 443

>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}

Probab=96.21  E-value=0.0062  Score=36.81  Aligned_cols=19  Identities=16%  Similarity=0.221  Sum_probs=17.6

Q ss_pred             ceEEEEeCCcceEEEEEEe
Q psy17247          3 KTVFGLYLGNSSASIGICR   21 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~   21 (41)
                      +.++|||+|||+.-+++++
T Consensus         5 ~~~lgIDiGtts~ka~l~d   23 (515)
T 3i8b_A            5 TLVAGVDTSTQSCKVRVTD   23 (515)
T ss_dssp             CEEEEEEECSSEEEEEEEE
T ss_pred             cEEEEEEeccccEEEEEEE
Confidence            4789999999999999997

>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8

Probab=96.11  E-value=0.0059  Score=32.09  Aligned_cols=22  Identities=27%  Similarity=0.575  Sum_probs=18.6

Q ss_pred             CCceEEEEeCCcceEEEEEEeC
Q psy17247          1 MSKTVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~~   22 (41)
                      |.+.++|||+|+..+-+|+.+.
T Consensus         1 ~~mriLGiDpG~~riGvAv~d~   22 (150)
T 1vhx_A            1 MSLRILGLDLGTKTLGVALSDE   22 (150)
T ss_dssp             -CEEEEEEEECSSEEEEEEECT
T ss_pred             CCCEEEEEEccCCEEEEEEEEC
Confidence            5667999999999999999864

>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}

Probab=96.04  E-value=0.0089  Score=35.93  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=18.5

Q ss_pred             ceEEEEeCCcceEEEEEEe-CCe
Q psy17247          3 KTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      +.++|||+|||+..+++++ +|+
T Consensus         7 ~~~lgIDiGtts~k~~l~d~~G~   29 (508)
T 3ifr_A            7 RQVIGLDIGTTSTIAILVRLPDT   29 (508)
T ss_dssp             CEEEEEEECSSEEEEEEEETTTE
T ss_pred             CEEEEEEecCcceEEEEECCCCC
Confidence            4689999999999999995 443

>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*

Probab=96.01  E-value=0.0065  Score=36.74  Aligned_cols=20  Identities=5%  Similarity=0.155  Sum_probs=17.7

Q ss_pred             ceEEEEeCCcceEEEEEEeC
Q psy17247          3 KTVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~   22 (41)
                      +.++|||+|||+.-+.+++.
T Consensus        10 ~~~lgID~GTts~Ka~l~d~   29 (538)
T 4bc3_A           10 RCCLGWDFSTQQVKVVAVDA   29 (538)
T ss_dssp             CEEEEEEECSSEEEEEEEET
T ss_pred             CEEEEEEEcCcCEEEEEECC
Confidence            47899999999999999953

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}

Probab=96.00  E-value=0.0056  Score=36.53  Aligned_cols=22  Identities=18%  Similarity=0.327  Sum_probs=18.0

Q ss_pred             ceEEEEeCCcceEEEEEEe-CCe
Q psy17247          3 KTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      +.++|||+|||+..+++++ +|+
T Consensus         2 ~~~lgiDiGtT~~k~~l~d~~g~   24 (495)
T 2dpn_A            2 AFLLALDQGTTSSRAILFTLEGR   24 (495)
T ss_dssp             -CEEEEEECSSEEEEEEECTTSC
T ss_pred             cEEEEEeeCCcceEEEEECCCCC
Confidence            4689999999999999995 443

>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}

Probab=95.76  E-value=0.013  Score=33.15  Aligned_cols=22  Identities=18%  Similarity=0.333  Sum_probs=19.7

Q ss_pred             eEEEEeCCcceEEEEEEeCCeE
Q psy17247          4 TVFGLYLGNSSASIGICRDGKV   25 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~~~~   25 (41)
                      +.++||.|+||..++++++++.
T Consensus         3 MlL~IDIGNT~iK~gl~d~~~l   24 (266)
T 3djc_A            3 LILCIDVGNSHIYGGVFDGDEI   24 (266)
T ss_dssp             CEEEEEECSSEEEEEEEETTEE
T ss_pred             eEEEEEECCCeEEEEEEECCEE
Confidence            6899999999999999988753

>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A

Probab=95.69  E-value=0.011  Score=33.02  Aligned_cols=24  Identities=29%  Similarity=0.452  Sum_probs=21.2

Q ss_pred             CCceEEEEeCCcceEEEEEEeCCe
Q psy17247          1 MSKTVFGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~~~~   24 (41)
                      |.++.+.||.|+||..+|++++++
T Consensus         1 ~~~M~L~IDIGNT~ik~gl~~~~~   24 (249)
T 3bex_A            1 MDPMYLLVDVGNTHSVFSITEDGK   24 (249)
T ss_dssp             CCCEEEEEEECSSEEEEEEESSSS
T ss_pred             CCceEEEEEECCCeEEEEEEECCE
Confidence            677899999999999999997654

>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6

Probab=95.56  E-value=0.044  Score=29.06  Aligned_cols=26  Identities=19%  Similarity=0.451  Sum_probs=20.8

Q ss_pred             eEEEEeCCcceEEEEEEe--CCeEEEEe
Q psy17247          4 TVFGLYLGNSSASIGICR--DGKVEILA   29 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~--~~~~~ii~   29 (41)
                      .++|||-|++++-+++.+  +++.+++.
T Consensus         2 ~ILGIDPGl~~tG~gvi~~~g~~~~~v~   29 (158)
T 1hjr_A            2 IILGIDPGSRVTGYGVIRQVGRQLSYLG   29 (158)
T ss_dssp             EEEEEECCSSEEEEEEEEEETTEEEEEE
T ss_pred             EEEEEccCCCCeeEEEEEecCCeEEEEE
Confidence            689999999999999983  55566553

>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*

Probab=95.47  E-value=0.014  Score=32.31  Aligned_cols=23  Identities=17%  Similarity=0.344  Sum_probs=19.2

Q ss_pred             CCceEEEEeCCcceEEEEEEe-CCe
Q psy17247          1 MSKTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      || .++|||+|.|+..+++++ +|+
T Consensus         1 mM-~~lgiDiGgt~~~~~l~d~~g~   24 (299)
T 2e2o_A            1 MM-IIVGVDAGGTKTKAVAYDCEGN   24 (299)
T ss_dssp             CC-CEEEEEECSSCEEEEEECTTSC
T ss_pred             Ce-EEEEEEeCCCcEEEEEEcCCCC
Confidence            54 789999999999999985 444

>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*

Probab=95.46  E-value=0.014  Score=34.60  Aligned_cols=18  Identities=28%  Similarity=0.421  Sum_probs=16.4

Q ss_pred             eEEEEeCCcceEEEEEEe
Q psy17247          4 TVFGLYLGNSSASIGICR   21 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~   21 (41)
                      .++|||+|||+.-+++++
T Consensus         5 ~~lgiDiGtts~k~~l~d   22 (489)
T 2uyt_A            5 NCVAVDLGASSGRVMLAR   22 (489)
T ss_dssp             EEEEEEECSSEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEE
Confidence            589999999999999984

>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5

Probab=95.43  E-value=0.02  Score=31.99  Aligned_cols=22  Identities=23%  Similarity=0.447  Sum_probs=18.6

Q ss_pred             ceEEEEeCCcceEEEEEEe-CCe
Q psy17247          3 KTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      ..++|||+|.|+..+++++ +++
T Consensus        11 ~~~lGiDiGgT~i~~~l~d~~G~   33 (305)
T 1zc6_A           11 RYLIGVDGGGTGTRIRLHASDGT   33 (305)
T ss_dssp             CEEEEEEECSSCEEEEEEETTCC
T ss_pred             CEEEEEEcCccceEEEEEcCCCC
Confidence            3789999999999999996 443

>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*

Probab=95.38  E-value=0.017  Score=32.52  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=19.6

Q ss_pred             CCceEEEEeCCcceEEEEEEe-CCe
Q psy17247          1 MSKTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      |.+.++|||+|.|+..+++++ +|+
T Consensus         4 M~~~~lgiDiGgt~~~~~l~d~~g~   28 (347)
T 2ch5_A            4 MAAIYGGVEGGGTRSEVLLVSEDGK   28 (347)
T ss_dssp             SSCEEEEEEECTTCEEEEEEETTSC
T ss_pred             cceEEEEEEcCccceEEEEEeCCCC
Confidence            444799999999999999985 444

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...

Probab=95.28  E-value=0.0064  Score=35.00  Aligned_cols=28  Identities=14%  Similarity=0.189  Sum_probs=20.8

Q ss_pred             ceEEEEeCCcceEEEEEEeCCeEE-EEeC
Q psy17247          3 KTVFGLYLGNSSASIGICRDGKVE-ILAN   30 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~~~-ii~~   30 (41)
                      ...|+||+||+|+.+++..++.+. ++++
T Consensus         5 ~~~ivID~Gs~~~k~G~~~~~~p~~~~ps   33 (375)
T 2fxu_A            5 TTALVCDNGSGLVKAGFAGDDAPRAVFPS   33 (375)
T ss_dssp             CCCEEEEECSSEEEEEETTCSSCSEEEEC
T ss_pred             CceEEEECCCCeEEEEECCCCCCceeecc
Confidence            357999999999999988555443 4444

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}

Probab=95.20  E-value=0.019  Score=34.33  Aligned_cols=22  Identities=18%  Similarity=0.298  Sum_probs=18.4

Q ss_pred             ceEEEEeCCcceEEEEEEe-CCe
Q psy17247          3 KTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      ..++|||+|||+..+++++ +|+
T Consensus         2 ~~~lgiDiGtts~k~~l~d~~G~   24 (504)
T 2d4w_A            2 DYVLAIDQGTTSSRAIVFDHSGE   24 (504)
T ss_dssp             CEEEEEEECSSEEEEEEECTTSC
T ss_pred             CEEEEEecCCcceEEEEECCCCC
Confidence            4689999999999999995 443

>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A

Probab=94.98  E-value=0.021  Score=33.92  Aligned_cols=20  Identities=25%  Similarity=0.489  Sum_probs=17.1

Q ss_pred             EEEEeCCcceEEEEEEe-CCe
Q psy17247          5 VFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~-~~~   24 (41)
                      ++|||+|||+.-+++++ +|+
T Consensus         2 ~lgiDiGtt~~k~~l~d~~g~   22 (484)
T 2itm_A            2 YIGIDLGTSGVKVILLNEQGE   22 (484)
T ss_dssp             EEEEEECSSEEEEEEECTTSC
T ss_pred             EEEEEecCcccEEEEECCCCC
Confidence            68999999999999995 443

>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}

Probab=94.81  E-value=0.035  Score=30.94  Aligned_cols=21  Identities=29%  Similarity=0.570  Sum_probs=18.7

Q ss_pred             CCceEEEEeCCcceEEEEEEe
Q psy17247          1 MSKTVFGLYLGNSSASIGICR   21 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~   21 (41)
                      |+..++|||+|.|+..+++++
T Consensus         4 m~~~~lgiDiggt~~~~~l~d   24 (326)
T 2qm1_A            4 MDKKIIGIDLGGTTIKFAILT   24 (326)
T ss_dssp             GGCEEEEEEECSSEEEEEEEE
T ss_pred             cccEEEEEEECCCEEEEEEEC
Confidence            556789999999999999985

>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*

Probab=94.68  E-value=0.027  Score=32.32  Aligned_cols=17  Identities=24%  Similarity=0.249  Sum_probs=14.6

Q ss_pred             ceEEEEeCCcceEEEEE
Q psy17247          3 KTVFGLYLGNSSASIGI   19 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~   19 (41)
                      +..+|||+||+|..+..
T Consensus        21 m~~igiDlG~~~tkv~~   37 (346)
T 2fsj_A           21 MVVVGLDVGYGDTKVIG   37 (346)
T ss_dssp             CEEEEEEECSSEEEEEC
T ss_pred             eEEEEEecCCcceeEEe
Confidence            46799999999999874

>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A*

Probab=94.65  E-value=0.056  Score=30.75  Aligned_cols=25  Identities=20%  Similarity=0.271  Sum_probs=20.1

Q ss_pred             CCceEEEEeCCcceEEEEEEe-CCeE
Q psy17247          1 MSKTVFGLYLGNSSASIGICR-DGKV   25 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~-~~~~   25 (41)
                      |+.+.+-||.|+||..+++++ +++.
T Consensus        21 ~~~M~L~IDiGNT~ik~g~~~~~~~~   46 (271)
T 2f9w_A           21 MASMILELDCGNSLIKWRVIEGAARS   46 (271)
T ss_dssp             --CEEEEEEECSSCEEEEEEETTTEE
T ss_pred             ccCcEEEEEeCCCeeEEEEEeCCCEE
Confidence            456789999999999999998 6653

>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A

Probab=94.40  E-value=0.1  Score=27.93  Aligned_cols=18  Identities=22%  Similarity=0.401  Sum_probs=16.5

Q ss_pred             eEEEEeCCcceEEEEEEe
Q psy17247          4 TVFGLYLGNSSASIGICR   21 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~   21 (41)
                      .++|||-|++++-+++.+
T Consensus         2 rILGIDPGl~~tG~gvi~   19 (166)
T 4ep4_A            2 VVAGIDPGITHLGLGVVA   19 (166)
T ss_dssp             EEEEEECCSSEEEEEEEE
T ss_pred             EEEEEccccCceEEEEEE
Confidence            689999999999999983

>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8

Probab=94.00  E-value=0.065  Score=26.36  Aligned_cols=26  Identities=19%  Similarity=0.298  Sum_probs=20.5

Q ss_pred             eEEEEeCCcceEEEEEEeCC-----eEEEEe
Q psy17247          4 TVFGLYLGNSSASIGICRDG-----KVEILA   29 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~~-----~~~ii~   29 (41)
                      .++|||+|+..+-||+.+..     ..+++.
T Consensus         2 riLglD~G~kriGvAvsd~~~~~A~pl~ti~   32 (98)
T 1iv0_A            2 RVGALDVGEARIGLAVGEEGVPLASGRGYLV   32 (98)
T ss_dssp             CEEEEEESSSEEEEEEECSCCSSCCCEEEEE
T ss_pred             cEEEEEeCCCEEEEEEEeCCCCeeeeeEEEE
Confidence            48999999999999998543     256664

>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5

Probab=93.48  E-value=0.11  Score=28.83  Aligned_cols=20  Identities=20%  Similarity=0.292  Sum_probs=17.5

Q ss_pred             EEEEeCCcceEEEEEEeCCe
Q psy17247          5 VFGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~~~~   24 (41)
                      ++|||+|-|+..++++++++
T Consensus         2 ~lgiDiGGT~~~~~l~d~g~   21 (291)
T 1zbs_A            2 ILIGDSGSTKTDWCIAKEGK   21 (291)
T ss_dssp             EEEEEECSSEEEEEEEETTE
T ss_pred             EEEEEeCccceEEEEEeCCe
Confidence            68999999999999988544

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=93.43  E-value=0.11  Score=28.26  Aligned_cols=19  Identities=16%  Similarity=0.277  Sum_probs=16.2

Q ss_pred             eEEEEeCCcceEEEEEEeC
Q psy17247          4 TVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~   22 (41)
                      .++|||+||++..+.+.++
T Consensus        29 ~~~gIDiGS~s~k~vi~~~   47 (272)
T 3h1q_A           29 YKVGVDLGTADIVLVVTDQ   47 (272)
T ss_dssp             CEEEEECCSSEEEEEEECT
T ss_pred             EEEEEEcccceEEEEEECC
Confidence            5889999999999888743

>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*

Probab=93.15  E-value=0.098  Score=29.44  Aligned_cols=19  Identities=16%  Similarity=0.431  Sum_probs=17.4

Q ss_pred             ceEEEEeCCcceEEEEEEe
Q psy17247          3 KTVFGLYLGNSSASIGICR   21 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~   21 (41)
                      +.++|||+|.|+..+++++
T Consensus         2 ~~~lgiDiGgt~i~~~l~d   20 (321)
T 3vgl_A            2 GLTIGVDIGGTKIAAGVVD   20 (321)
T ss_dssp             CEEEEEEECSSEEEEEEEC
T ss_pred             cEEEEEEECCCEEEEEEEC
Confidence            5789999999999999985

>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}

Probab=92.74  E-value=0.19  Score=28.34  Aligned_cols=21  Identities=33%  Similarity=0.768  Sum_probs=18.5

Q ss_pred             EEEEeCCcceEEEEEEeCCeE
Q psy17247          5 VFGLYLGNSSASIGICRDGKV   25 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~~~~~   25 (41)
                      .+.||.|+||..++++++++.
T Consensus         2 lL~IDIGNT~ik~gl~~~~~l   22 (268)
T 2h3g_X            2 IFVLDVGNTNAVLGVFEEGEL   22 (268)
T ss_dssp             EEEEEECSSEEEEEEEETTEE
T ss_pred             EEEEEECcCcEEEEEEECCEE
Confidence            678999999999999987753

>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6

Probab=91.78  E-value=0.1  Score=33.08  Aligned_cols=26  Identities=12%  Similarity=0.333  Sum_probs=20.5

Q ss_pred             ceEEEEeCCcceEEEEEE--eCCeEEEE
Q psy17247          3 KTVFGLYLGNSSASIGIC--RDGKVEIL   28 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~--~~~~~~ii   28 (41)
                      +.++|+|.||+..++++.  .+++++++
T Consensus         2 ~~i~GiDIGnsttev~l~~~~~g~i~~l   29 (607)
T 1nbw_A            2 PLIAGIDIGNATTEVALASDYPQARAFV   29 (607)
T ss_dssp             CEEEEEEECSSEEEEEEEECBTTBCCCC
T ss_pred             cEEEEEEecCceEEEEEEEEcCCeEEEE
Confidence            578999999999999986  34555555

>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5

Probab=91.74  E-value=0.11  Score=28.85  Aligned_cols=20  Identities=10%  Similarity=0.172  Sum_probs=15.7

Q ss_pred             EEEEeCCcceEEEEEEeCCe
Q psy17247          5 VFGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~~~~   24 (41)
                      ++|||+|-|+..++++++++
T Consensus         2 ~lgiDiGGT~i~~~l~d~g~   21 (291)
T 1zxo_A            2 ILIADSGSTKTDWCVVLNGA   21 (291)
T ss_dssp             --CEECCTTCEEEEEECSSS
T ss_pred             EEEEEeccccEEEEEEcCCe
Confidence            68999999999999987443

>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*

Probab=91.37  E-value=0.43  Score=27.71  Aligned_cols=21  Identities=19%  Similarity=0.354  Sum_probs=18.7

Q ss_pred             ceEEEEeCCcceEEEEEEeCC
Q psy17247          3 KTVFGLYLGNSSASIGICRDG   23 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~   23 (41)
                      +.++|||+|.|+..+++++.+
T Consensus         2 ~~vlgidiGgt~ik~al~d~~   22 (381)
T 1saz_A            2 FRILTINPGSTSTKLSIFEDE   22 (381)
T ss_dssp             CEEEEEEECSSEEEEEEEETT
T ss_pred             CeEEEEECCccceeEEEEecc
Confidence            468999999999999999765

>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}

Probab=91.33  E-value=0.21  Score=27.96  Aligned_cols=20  Identities=30%  Similarity=0.519  Sum_probs=17.7

Q ss_pred             eEEEEeCCcceEEEEEEeCC
Q psy17247          4 TVFGLYLGNSSASIGICRDG   23 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~~   23 (41)
                      .++|||+|.|+..+++.+.+
T Consensus         2 ~~lgiDiGgt~i~~~l~d~~   21 (302)
T 3vov_A            2 KVVGLDLGGTKIAAGVFDGK   21 (302)
T ss_dssp             CEEEEEECSSEEEEEEECSS
T ss_pred             EEEEEEEcCCEEEEEEEeCC
Confidence            68999999999999998643

>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*

Probab=90.91  E-value=0.26  Score=27.83  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=19.1

Q ss_pred             ceEEEEeCCcceEEEEEEe--CCeE
Q psy17247          3 KTVFGLYLGNSSASIGICR--DGKV   25 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~--~~~~   25 (41)
                      ..++|||+|-|+..+++++  ++++
T Consensus        14 ~~~lgiDiGGT~i~~~l~dl~~g~i   38 (332)
T 1sz2_A           14 KYALVGDVGGTNARLALCDIASGEI   38 (332)
T ss_dssp             CEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             CEEEEEEechhheEEEEEECCCCcE
Confidence            4689999999999999996  3543

>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14

Probab=90.63  E-value=0.28  Score=28.06  Aligned_cols=22  Identities=18%  Similarity=0.166  Sum_probs=19.1

Q ss_pred             eEEEEeCCcceEEEEEEeCCeE
Q psy17247          4 TVFGLYLGNSSASIGICRDGKV   25 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~~~~   25 (41)
                      ..+|||.|.|..-++++++++.
T Consensus        21 ~~iGIDiGsTt~K~V~~~~~~i   42 (287)
T 2ews_A           21 MKVGIDAGGTLIKIVQEQDNQR   42 (287)
T ss_dssp             CEEEEEECSSEEEEEEECSSCE
T ss_pred             eEEEEEEChhhEEEEEEcCCEE
Confidence            5789999999999999977654

>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}

Probab=90.58  E-value=0.27  Score=27.38  Aligned_cols=21  Identities=14%  Similarity=0.479  Sum_probs=17.9

Q ss_pred             eEEEEeCCcceEEEEEEe-CCe
Q psy17247          4 TVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~-~~~   24 (41)
                      .++|||+|.|+..+++.+ +++
T Consensus         5 ~~lgiDiGgt~i~~~l~d~~G~   26 (297)
T 4htl_A            5 KIAAFDIGGTALKMGVVLPHGE   26 (297)
T ss_dssp             CEEEEEECSSEEEEEEECTTSC
T ss_pred             EEEEEEeCCCeEEEEEECCCCC
Confidence            689999999999999985 443

>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}

Probab=90.50  E-value=0.29  Score=27.55  Aligned_cols=21  Identities=19%  Similarity=0.414  Sum_probs=18.0

Q ss_pred             eEEEEeCCcceEEEEEEe-CCe
Q psy17247          4 TVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~-~~~   24 (41)
                      .++|||+|.|+..+++.+ +|+
T Consensus         8 ~~lgiDiGgt~i~~~l~d~~G~   29 (310)
T 3htv_A            8 VVAGVDMGATHIRFCLRTAEGE   29 (310)
T ss_dssp             EEEEEEECSSEEEEEEEETTSC
T ss_pred             EEEEEEeCCCEEEEEEECCCCC
Confidence            689999999999999985 443

>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A

Probab=89.90  E-value=0.33  Score=27.39  Aligned_cols=22  Identities=18%  Similarity=0.436  Sum_probs=18.1

Q ss_pred             ceEEEEeCCcceEEEEEEe-CCe
Q psy17247          3 KTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      ..++|||+|.|+..+++++ +|+
T Consensus        30 ~~~lgiDiGgt~i~~~l~d~~G~   52 (343)
T 2yhw_A           30 LSALAVDLGGTNLRVAIVSMKGE   52 (343)
T ss_dssp             EEEEEEEECSSEEEEEEEETTSC
T ss_pred             cEEEEEEECCCEEEEEEECCCCc
Confidence            3589999999999999985 443

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*

Probab=89.21  E-value=0.072  Score=30.93  Aligned_cols=23  Identities=17%  Similarity=0.026  Sum_probs=0.0

Q ss_pred             eEEEEeCCcceEEEEEEeCCeEE
Q psy17247          4 TVFGLYLGNSSASIGICRDGKVE   26 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~~~~~   26 (41)
                      ..|+||+||.++.+++..+..+.
T Consensus         7 ~~ivID~Gs~~~k~G~ag~~~P~   29 (394)
T 1k8k_B            7 KVVVCDNGTGFVKCGYAGSNFPE   29 (394)
T ss_dssp             -----------------------
T ss_pred             CEEEEECCCCeEEEeeCCCCCcc
Confidence            57899999999999988555454

>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}

Probab=89.15  E-value=0.5  Score=26.54  Aligned_cols=22  Identities=23%  Similarity=0.658  Sum_probs=18.3

Q ss_pred             ceEEEEeCCcceEEEEEEe-CCe
Q psy17247          3 KTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      ..++|||+|.|+..+++++ +|+
T Consensus        19 ~~~lgidiggt~i~~~l~d~~g~   41 (321)
T 3r8e_A           19 GMILGIDVGGTSVKFGLVTPEGE   41 (321)
T ss_dssp             CCEEEEECCSSEEEEEEECTTCC
T ss_pred             cEEEEEEECCCEEEEEEEcCCCc
Confidence            4689999999999999985 443

>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3

Probab=88.84  E-value=0.41  Score=28.78  Aligned_cols=19  Identities=16%  Similarity=0.193  Sum_probs=16.7

Q ss_pred             ceEEEEeCCcceEEEEEEe
Q psy17247          3 KTVFGLYLGNSSASIGICR   21 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~   21 (41)
                      ..++|||||-||..|++.+
T Consensus        68 G~~lalDlGGTn~Rv~~V~   86 (451)
T 1bdg_A           68 GNFLALDLGGTNYRVLSVT   86 (451)
T ss_dssp             EEEEEEEESSSSEEEEEEE
T ss_pred             ceEEEEEeCCCeEEEEEEe
Confidence            3579999999999999983

>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*

Probab=88.74  E-value=0.58  Score=26.73  Aligned_cols=21  Identities=24%  Similarity=0.360  Sum_probs=19.0

Q ss_pred             eEEEEeCCcceEEEEEEeCCe
Q psy17247          4 TVFGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~~~   24 (41)
                      .++|||-++..+++|++++++
T Consensus         2 ~iLgIdts~~~~~val~~~g~   22 (330)
T 2ivn_A            2 LALGIEGTAHTLGIGIVSEDK   22 (330)
T ss_dssp             CEEEEECSSSEEEEEEECSSC
T ss_pred             EEEEEEccCCCeEEEEEECCE
Confidence            689999999999999998774

>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}

Probab=88.50  E-value=0.57  Score=26.84  Aligned_cols=19  Identities=32%  Similarity=0.424  Sum_probs=17.0

Q ss_pred             ceEEEEeCCcceEEEEEEe
Q psy17247          3 KTVFGLYLGNSSASIGICR   21 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~   21 (41)
                      ..++|||+|.|+..+++++
T Consensus        29 ~~~lgiDiGgt~i~~~l~d   47 (373)
T 2q2r_A           29 PLTFVGDVGGTSARMGFVR   47 (373)
T ss_dssp             CEEEEEEECSSEEEEEEEE
T ss_pred             CeEEEEEEccccEEEEEEe
Confidence            4689999999999999985

>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}

Probab=88.23  E-value=0.96  Score=26.42  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=18.6

Q ss_pred             ceEEEEeCCcceEEEEEEeCCe
Q psy17247          3 KTVFGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~   24 (41)
                      ..++|||+|.|+..+++.++|+
T Consensus         9 ~~~lgiDIGgt~i~~~l~d~G~   30 (366)
T 3mcp_A            9 RIVMTLDAGGTNFVFSAIQGGK   30 (366)
T ss_dssp             CEEEEEECSSSEEEEEEEETTE
T ss_pred             CEEEEEEECcceEEEEEEECCE
Confidence            4689999999999999988443

>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10

Probab=88.22  E-value=0.57  Score=25.63  Aligned_cols=21  Identities=19%  Similarity=0.469  Sum_probs=17.9

Q ss_pred             eEEEEeCCcceEEEEEEe-CCe
Q psy17247          4 TVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~-~~~   24 (41)
                      .++|||+|.|+..+++.+ +++
T Consensus         2 ~~lgidiggt~~~~~l~d~~g~   23 (289)
T 2aa4_A            2 TTLAIDIGGTKLAAALIGADGQ   23 (289)
T ss_dssp             CEEEEEECSSEEEEEEECTTCC
T ss_pred             eEEEEEeCCCEEEEEEECCCCC
Confidence            589999999999999985 454

>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A

Probab=88.16  E-value=0.53  Score=28.43  Aligned_cols=22  Identities=9%  Similarity=0.357  Sum_probs=17.9

Q ss_pred             ceEEEEeCCcceEEEEEEe-CCe
Q psy17247          3 KTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      ...+|||+|-||..+++.+ +|+
T Consensus        61 G~~laiDlGGTnirv~lV~~~G~   83 (457)
T 2yhx_A           61 GSFLAIVMGGGDLEVILISLAGR   83 (457)
T ss_dssp             EEEEEEEECSSEEEEEEEEEETT
T ss_pred             ceEEEEEeCCCeEEEEEEEeCCC
Confidence            3579999999999999983 443

>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10

Probab=87.55  E-value=0.47  Score=26.07  Aligned_cols=21  Identities=24%  Similarity=0.409  Sum_probs=17.7

Q ss_pred             eEEEEeCCcceEEEEEEe-CCe
Q psy17247          4 TVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~-~~~   24 (41)
                      .++|||+|.|+..+++.+ +|+
T Consensus         5 ~~lgidiggt~i~~~l~d~~g~   26 (292)
T 2gup_A            5 TIATIDIGGTGIKFASLTPDGK   26 (292)
T ss_dssp             CEEEEEEETTEEEEEEECTTCC
T ss_pred             EEEEEEECCCEEEEEEECCCCC
Confidence            489999999999999985 443

>3t69_A Putative 2-dehydro-3-deoxygalactonokinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.55A {Sinorhizobium meliloti}

Probab=87.10  E-value=0.58  Score=27.52  Aligned_cols=22  Identities=18%  Similarity=0.083  Sum_probs=16.7

Q ss_pred             CCceEEEEeCCcceEEEEEEeC
Q psy17247          1 MSKTVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~~   22 (41)
                      |+...|++|-||||--+-+++.
T Consensus         5 ~~~~~IavDWGTSnlRa~l~~~   26 (330)
T 3t69_A            5 TAGYYAAVDWGTSSFRLWIIGE   26 (330)
T ss_dssp             ---CEEEEEECSSCEEEEEECT
T ss_pred             CCCCEEEEEecchheehheecC
Confidence            3456899999999999888853

>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*

Probab=86.91  E-value=0.84  Score=26.98  Aligned_cols=19  Identities=5%  Similarity=-0.130  Sum_probs=15.9

Q ss_pred             ceEEEEeCCcceEEEEEEe
Q psy17247          3 KTVFGLYLGNSSASIGICR   21 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~   21 (41)
                      ..++|+|+||++-++.+.+
T Consensus         8 ~~ivglDIGts~I~~vv~~   26 (419)
T 4a2a_A            8 VFYTSIDIGSRYIKGLVLG   26 (419)
T ss_dssp             CEEEEEEECSSEEEEEEEE
T ss_pred             CEEEEEEccCCEEEEEEEE
Confidence            3688999999999888763

>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}

Probab=86.63  E-value=0.71  Score=26.05  Aligned_cols=21  Identities=14%  Similarity=0.360  Sum_probs=17.8

Q ss_pred             eEEEEeCCcceEEEEEEe-CCe
Q psy17247          4 TVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~-~~~   24 (41)
                      .++|||+|.|+..+++.+ +++
T Consensus        25 ~~lgiDiGgt~i~~~l~d~~G~   46 (327)
T 4db3_A           25 MYYGFDVGGTKIEFGAFNEKLE   46 (327)
T ss_dssp             CEEEEEECSSEEEEEEECTTCC
T ss_pred             EEEEEEECCCEEEEEEEeCCCc
Confidence            589999999999999985 443

>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A

Probab=86.09  E-value=0.67  Score=26.74  Aligned_cols=22  Identities=9%  Similarity=0.122  Sum_probs=18.3

Q ss_pred             ceEEEEeCCcceEEEEEEe-CCe
Q psy17247          3 KTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      ..++|||+|.|+..+++++ +|+
T Consensus        85 ~~~lgiDiG~t~i~~~l~d~~G~  107 (406)
T 1z6r_A           85 WHYLSLRISRGEIFLALRDLSSK  107 (406)
T ss_dssp             CEEEEEEEETTEEEEEEEETTCC
T ss_pred             cEEEEEEEcCCEEEEEEEcCCCC
Confidence            4689999999999999985 443

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}

Probab=86.08  E-value=0.26  Score=30.15  Aligned_cols=20  Identities=15%  Similarity=0.240  Sum_probs=16.5

Q ss_pred             eEEEEeCCcceEEEEEEeCC
Q psy17247          4 TVFGLYLGNSSASIGICRDG   23 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~~   23 (41)
                      ..|+||+|+.++-+++..++
T Consensus        24 ~~iVID~GS~~~kaG~ag~~   43 (498)
T 3qb0_A           24 SAVVIDPGSYTTNIGYSGSD   43 (498)
T ss_dssp             SCEEEECCSSEEEEEETTCS
T ss_pred             CeEEEECCCcEEEEEECCCC
Confidence            47899999999999887444

>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10

Probab=86.07  E-value=0.88  Score=24.83  Aligned_cols=18  Identities=22%  Similarity=0.488  Sum_probs=16.6

Q ss_pred             eEEEEeCCcceEEEEEEe
Q psy17247          4 TVFGLYLGNSSASIGICR   21 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~   21 (41)
                      .++|||+|.|+..+++.+
T Consensus        13 ~~lgidiggt~i~~~l~d   30 (267)
T 1woq_A           13 PLIGIDIGGTGIKGGIVD   30 (267)
T ss_dssp             CEEEEEECSSEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEE
Confidence            589999999999999996

>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=85.85  E-value=0.89  Score=26.13  Aligned_cols=22  Identities=9%  Similarity=0.126  Sum_probs=18.2

Q ss_pred             ceEEEEeCCcceEEEEEEe-CCe
Q psy17247          3 KTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      ..++|||+|.|+..+++++ +|+
T Consensus        87 ~~~lGIDiGgt~i~~~l~d~~G~  109 (380)
T 2hoe_A           87 AYVLGIEVTRDEIAACLIDASMN  109 (380)
T ss_dssp             CEEEEEEECSSEEEEEEEETTCC
T ss_pred             CeEEEEEECCCEEEEEEECCCCC
Confidence            3589999999999999985 443

>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10

Probab=84.76  E-value=1.1  Score=24.98  Aligned_cols=21  Identities=14%  Similarity=0.540  Sum_probs=17.7

Q ss_pred             eEEEEeCCcceEEEEEEe-CCe
Q psy17247          4 TVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~-~~~   24 (41)
                      .++|||+|.|+..+++.+ +++
T Consensus        25 ~~lgiDiGgt~i~~~l~d~~g~   46 (327)
T 2ap1_A           25 MYYGFDIGGTKIALGVFDSTRR   46 (327)
T ss_dssp             EEEEEEECSSEEEEEEEETTCC
T ss_pred             eEEEEEECCCEEEEEEEeCCCC
Confidence            589999999999999985 443

>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*

Probab=84.57  E-value=0.97  Score=27.68  Aligned_cols=17  Identities=18%  Similarity=0.362  Sum_probs=15.9

Q ss_pred             eEEEEeCCcceEEEEEE
Q psy17247          4 TVFGLYLGNSSASIGIC   20 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~   20 (41)
                      .+++||||-||..|++.
T Consensus        81 ~~LalDlGGTn~Rv~~V   97 (485)
T 3o8m_A           81 DFLALDLGGTNLRVVLV   97 (485)
T ss_dssp             EEEEEEESSSEEEEEEE
T ss_pred             EEEEEEecCCeEEEEEE
Confidence            58999999999999998

>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}

Probab=84.27  E-value=2.8  Score=23.84  Aligned_cols=29  Identities=17%  Similarity=0.222  Sum_probs=21.2

Q ss_pred             CCceEEEEeCCcceEEEEEE--eCCeEEEEe
Q psy17247          1 MSKTVFGLYLGNSSASIGIC--RDGKVEILA   29 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~--~~~~~~ii~   29 (41)
                      |++.+..||+|+-..-+.++  .++.++++.
T Consensus         2 m~~~~A~IDiGSNsirL~I~~~~~~~~~~i~   32 (315)
T 3mdq_A            2 MSQRIGVIDMGTNTFHLLITDIVNDRPHTLV   32 (315)
T ss_dssp             --CEEEEEEECSSEEEEEEEEEETTEEEEEE
T ss_pred             CCceEEEEEecCCcEEEEEEEEcCCceEEee
Confidence            77788999999988888876  456666664

>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*

Probab=83.44  E-value=1.1  Score=29.16  Aligned_cols=19  Identities=16%  Similarity=0.314  Sum_probs=16.8

Q ss_pred             ceEEEEeCCcceEEEEEEe
Q psy17247          3 KTVFGLYLGNSSASIGICR   21 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~   21 (41)
                      ..+++||||-||..|++.+
T Consensus       526 G~~lalDlGGTn~Rv~~V~  544 (917)
T 1cza_N          526 GDFLALDLGGTNFRVLLVK  544 (917)
T ss_dssp             EEEEEEEESSSSEEEEEEE
T ss_pred             eEEEEEEECCCcEEEEEEE
Confidence            4589999999999999983

>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*

Probab=82.70  E-value=1.2  Score=28.95  Aligned_cols=19  Identities=32%  Similarity=0.235  Sum_probs=16.8

Q ss_pred             ceEEEEeCCcceEEEEEEe
Q psy17247          3 KTVFGLYLGNSSASIGICR   21 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~   21 (41)
                      ..++|||+|-||-.+++++
T Consensus        78 G~~laiDlGGTnirv~lv~   96 (917)
T 1cza_N           78 GDFIALDLGGSSFRILRVQ   96 (917)
T ss_dssp             EEEEEEEESSSSEEEEEEE
T ss_pred             ceEEEEEeCCCeEEEEEEE
Confidence            3579999999999999984

>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A

Probab=82.36  E-value=2.1  Score=27.26  Aligned_cols=27  Identities=26%  Similarity=0.565  Sum_probs=19.2

Q ss_pred             ceEEEEeCCcceEEEEEE--eC-CeEEEEe
Q psy17247          3 KTVFGLYLGNSSASIGIC--RD-GKVEILA   29 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~--~~-~~~~ii~   29 (41)
                      +.+.|+|.|++..-+|+.  .+ +.++.+.
T Consensus         2 ~~i~gvdign~tte~~la~~~~~~~~~f~~   31 (610)
T 2d0o_A            2 RYIAGIDIGNSSTEVALATLDEAGALTITH   31 (610)
T ss_dssp             EEEEEEEECSSEEEEEEEEECTTCCEEEEE
T ss_pred             cEEEEEecCCcchheeeeeecCCCceEEee
Confidence            568899999666666654  43 6677765

>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=82.01  E-value=1.1  Score=26.19  Aligned_cols=22  Identities=18%  Similarity=0.365  Sum_probs=18.1

Q ss_pred             ceEEEEeCCcceEEEEEEe-CCe
Q psy17247          3 KTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      ..++|||+|.|+..+++++ +|+
T Consensus       108 ~~~lGIDiGgt~i~~~l~d~~G~  130 (429)
T 1z05_A          108 WQFLSMRLGRGYLTIALHELGGE  130 (429)
T ss_dssp             EEEEEEEEETTEEEEEEEETTSC
T ss_pred             CEEEEEEECCCEEEEEEECCCCC
Confidence            3579999999999999985 443

>3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}

Probab=81.70  E-value=1.1  Score=24.67  Aligned_cols=15  Identities=33%  Similarity=0.576  Sum_probs=13.3

Q ss_pred             ceEEEEeCCcceEEE
Q psy17247          3 KTVFGLYLGNSSASI   17 (41)
Q Consensus         3 ~~~iGiD~GTtns~v   17 (41)
                      ..++|||+|-|+..+
T Consensus         6 ~~~lgiDIGGT~i~~   20 (226)
T 3lm2_A            6 QTVLAIDIGGSHVKI   20 (226)
T ss_dssp             CCEEEEEECSSEEEE
T ss_pred             CEEEEEEECCCEEEE
Confidence            468999999999995

>4dkw_A Large terminase protein; DNA-packaging, small terminase, nuclease FO endonuclease, DNA, DNA-packaging motor, hydrolase; 2.02A {Enterobacteria phage P22}

Probab=81.36  E-value=1.4  Score=23.97  Aligned_cols=14  Identities=7%  Similarity=0.005  Sum_probs=11.1

Q ss_pred             eEEEEeCCcceEEE
Q psy17247          4 TVFGLYLGNSSASI   17 (41)
Q Consensus         4 ~~iGiD~GTtns~v   17 (41)
                      ..+|+|||++|...
T Consensus        28 ~~~G~DfG~~~P~a   41 (211)
T 4dkw_A           28 VIDAQDFGWNHPQA   41 (211)
T ss_dssp             EEEEEECCSSSCEE
T ss_pred             EEEEEECCCCCCcE
Confidence            46799999998544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	41
d1bupa1	185	c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas	1e-06
d1dkgd1	183	c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas	1e-05

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (92), Expect = 1e-06
 Identities = 16/38 (42%), Positives = 27/38 (71%)

Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
             G+ LG++ + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 2  PAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYV 39

>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

 Score = 36.9 bits (85), Expect = 1e-05
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 5  VFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          + G+ LG +++ + I       +L N  GDR TP+++
Sbjct: 2  IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSII 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	41
d1bupa1	185	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	99.65
d1dkgd1	183	Heat shock protein 70kDa, ATPase fragment {Escheri	99.6
d1jcea1	137	Prokaryotic actin homolog MreB {Thermotoga maritim	98.82
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	97.41
d1zc6a1	114	Probable N-acetylglucosamine kinase CV2896 {Chromo	97.18
d2p3ra1	252	Glycerol kinase {Escherichia coli [TaxId: 562]}	96.95
d1nu0a_	138	Hypothetical protein YqgF (RuvX) {Escherichia coli	96.76
d1r59o1	252	Glycerol kinase {Enterococcus casseliflavus [TaxId	96.48
d2ch5a2	117	N-acetylglucosamine kinase, NAGK {Human (Homo sapi	96.39
d1q18a1	110	Glucokinase Glk {Escherichia coli [TaxId: 562]}	96.32
d1woqa1	129	Inorganic polyphosphate/ATP-glucomannokinase PPGMK	96.27
d2ap1a2	117	Putative regulator protein YcfX {Salmonella typhim	95.86
d2aa4a1	119	N-acetylmannosamine kinase NanK {Escherichia coli	95.62
d2ewsa1	267	Type II pantothenate kinase, CoaW {Staphylococcus	95.37
d1vhxa_	140	Hypothetical protein YrrK (RuvX) {Bacillus subtili	95.08
d3bexa1	118	Type III pantothenate kinase, CoaX {Thermotoga mar	94.83
d1hjra_	158	RuvC resolvase {Escherichia coli [TaxId: 562]}	94.71
d2gupa1	114	Hypothetical protein SP2142 {Streptococcus pneumon	94.54
d1iv0a_	98	Hypothetical protein, YqgF homologue {Thermus ther	94.17
d2f9wa2	114	Type III pantothenate kinase, CoaX {Pseudomonas ae	93.79
d1xc3a1	118	Putative fructokinase YhdR {Bacillus subtilis [Tax	93.46
d1e4ft1	193	Cell division protein FtsA {Thermotoga maritima [T	93.37
d2hoea3	128	N-acetylglucosamine kinase {Thermotoga maritima [T	92.76
d2d0oa2	241	Diol dehydratase-reactivating factor large subunit	91.32
d1nbwa2	239	ATPase domain of the glycerol dehydratase reactiva	91.08
d1sz2a1	319	Glucokinase Glk {Escherichia coli [TaxId: 562]}	90.88
d1czan3	205	Mammalian type I hexokinase {Human (Homo sapiens)	90.76
d2fsja2	164	Hypothetical protein Ta0583 {Archaeon Thermoplasma	89.23
d1v4sa1	205	Glucokinase {Human (Homo sapiens) [TaxId: 9606]}	88.11
d1bdga1	208	Hexokinase {Blood fluke (Schistosoma mansoni) [Tax	88.05
d1ig8a1	207	Hexokinase {Baker's yeast (Saccharomyces cerevisia	88.04
d1czan1	207	Mammalian type I hexokinase {Human (Homo sapiens)	87.49
d1z05a3	128	Transcriptional regulator VC2007 {Vibrio cholerae	86.36
d1z6ra2	129	Mlc protein {Escherichia coli [TaxId: 562]}	82.68
d2zgya1	157	Plasmid segregation protein ParM {Escherichia coli	81.84

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=5.1e-17  Score=86.07  Aligned_cols=39  Identities=41%  Similarity=0.780  Sum_probs=36.5

Q ss_pred             ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      .++||||||||||+||++++|++++++++++++.+||+|
T Consensus         1 g~vvGIDfGTt~s~va~~~~g~~~ii~~~~~~r~~Ps~i   39 (185)
T d1bupa1           1 GPAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYV   39 (185)
T ss_dssp             CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCE
T ss_pred             CCEEEEEcChhcEEEEEEECCEEEEEECCCCCccceeEE
Confidence            368999999999999999999999999999999999975

>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=99.60  E-value=3.5e-16  Score=82.69  Aligned_cols=37  Identities=30%  Similarity=0.665  Sum_probs=35.2

Q ss_pred             EEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247          5 VFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV   41 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V   41 (41)
                      +||||||||||+||+++++++++++|+++++.+||++
T Consensus         2 VvGIDfGTt~s~va~~~~~~~~ii~n~~~~~~~ps~v   38 (183)
T d1dkgd1           2 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSII   38 (183)
T ss_dssp             CCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEE
T ss_pred             EEEEEcChhcEEEEEEECCEEEEEEcCCCccccccee
Confidence            6899999999999999999999999999999999975

>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.82  E-value=1.1e-09  Score=55.06  Aligned_cols=19  Identities=21%  Similarity=0.368  Sum_probs=16.2

Q ss_pred             EEEEeCCcceEEEEEEeCC
Q psy17247          5 VFGLYLGNSSASIGICRDG   23 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~~~   23 (41)
                      .||||||||||+|++..++
T Consensus         2 ~iGIDlGTtns~va~~~~~   20 (137)
T d1jcea1           2 DIGIDLGTANTLVFLRGKG   20 (137)
T ss_dssp             EEEEEECSSEEEEEETTTE
T ss_pred             eEEEEcChhhEEEEEeCCC
Confidence            6899999999999986544

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=97.41  E-value=0.00011  Score=37.91  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=19.6

Q ss_pred             CceEEEEeCCcceEEEEEEeCCe
Q psy17247          2 SKTVFGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         2 ~~~~iGiD~GTtns~va~~~~~~   24 (41)
                      ++.+||||+|.|++.+++.+++.
T Consensus         1 ~M~~lGIDiGGT~~k~~vvd~~g   23 (259)
T d1huxa_           1 SIYTLGIDVGSTASKCIILKDGK   23 (259)
T ss_dssp             CCEEEEEEECSSEEEEEEEETTT
T ss_pred             CcEEEEEEeCcceEEEEEEcCCC
Confidence            46899999999999999996543

>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Probable N-acetylglucosamine kinase CV2896
species: Chromobacterium violaceum [TaxId: 536]

Probab=97.18  E-value=0.00022  Score=33.95  Aligned_cols=21  Identities=14%  Similarity=0.267  Sum_probs=18.7

Q ss_pred             CceEEEEeCCcceEEEEEEeC
Q psy17247          2 SKTVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         2 ~~~~iGiD~GTtns~va~~~~   22 (41)
                      |+.+||||.|+|++.+++++.
T Consensus         3 m~y~lGID~GGT~tk~~l~d~   23 (114)
T d1zc6a1           3 IRYLIGVDGGGTGTRIRLHAS   23 (114)
T ss_dssp             CCEEEEEEECSSCEEEEEEET
T ss_pred             ccEEEEEEcCcceEEEEEEcC
Confidence            578999999999999999953

>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein YqgF (RuvX)
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.0011  Score=33.24  Aligned_cols=23  Identities=22%  Similarity=0.341  Sum_probs=20.7

Q ss_pred             CCceEEEEeCCcceEEEEEEeCC
Q psy17247          1 MSKTVFGLYLGNSSASIGICRDG   23 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~~~   23 (41)
                      |+..++|||+|+-.+-+|+-+..
T Consensus         1 m~griLgiD~G~kriGvAvsd~~   23 (138)
T d1nu0a_           1 MSGTLMAFDFGTKSIGVAVGQRI   23 (138)
T ss_dssp             CCCEEEEEECCSSEEEEEEEETT
T ss_pred             CCCcEEEEEeCCCEEEEEEeCCC
Confidence            88999999999999999998543

>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

Probab=96.48  E-value=0.00033  Score=37.15  Aligned_cols=18  Identities=22%  Similarity=0.211  Sum_probs=16.5

Q ss_pred             eEEEEeCCcceEEEEEEe
Q psy17247          4 TVFGLYLGNSSASIGICR   21 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~   21 (41)
                      .++|||+|||+.-+++++
T Consensus         2 yvlgiDiGTtsvKa~l~D   19 (252)
T d1r59o1           2 YVMAIDQGTTSSRAIIFD   19 (252)
T ss_dssp             EEEEEBCCSSBCBCCEEC
T ss_pred             EEEEEEecccceeeeEEe
Confidence            579999999999999995

>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: N-acetylglucosamine kinase, NAGK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0024  Score=30.72  Aligned_cols=22  Identities=14%  Similarity=0.199  Sum_probs=20.1

Q ss_pred             CCceEEEEeCCcceEEEEEEeC
Q psy17247          1 MSKTVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         1 m~~~~iGiD~GTtns~va~~~~   22 (41)
                      |++.++|||-|.|.+.+.+++.
T Consensus         1 m~~~~~GIDgGGTkT~~~l~d~   22 (117)
T d2ch5a2           1 MAAIYGGVEGGGTRSEVLLVSE   22 (117)
T ss_dssp             SSCEEEEEEECTTCEEEEEEET
T ss_pred             CCcEEEEEEcChhhEEEEEECC
Confidence            8899999999999999999854

>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.0024  Score=29.99  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=19.0

Q ss_pred             CceEEEEeCCcceEEEEEEeCC
Q psy17247          2 SKTVFGLYLGNSSASIGICRDG   23 (41)
Q Consensus         2 ~~~~iGiD~GTtns~va~~~~~   23 (41)
                      ++.++++|+|-||+..|+++++
T Consensus         1 t~~~L~~DIGGTn~r~alv~~~   22 (110)
T d1q18a1           1 TKYALVGDVGGTNARLALCDIA   22 (110)
T ss_dssp             CCEEEEEEECSSEEEEEEEETT
T ss_pred             CcEEEEEEECchhEEEEEEEcC
Confidence            3678999999999999999654

>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK
species: Arthrobacter sp. KM [TaxId: 184230]

Probab=96.27  E-value=0.0027  Score=30.20  Aligned_cols=20  Identities=20%  Similarity=0.448  Sum_probs=17.9

Q ss_pred             CceEEEEeCCcceEEEEEEe
Q psy17247          2 SKTVFGLYLGNSSASIGICR   21 (41)
Q Consensus         2 ~~~~iGiD~GTtns~va~~~   21 (41)
                      ++.+||||+|-|+..+++.+
T Consensus         1 ~~~vlGiDiGgT~i~~~l~d   20 (129)
T d1woqa1           1 NAPLIGIDIGGTGIKGGIVD   20 (129)
T ss_dssp             CCCEEEEEECSSEEEEEEEE
T ss_pred             CCCEEEEEECcceEEEEEEE
Confidence            46799999999999999985

>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative regulator protein YcfX
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.86  E-value=0.0077  Score=28.18  Aligned_cols=19  Identities=16%  Similarity=0.576  Sum_probs=16.6

Q ss_pred             eEEEEeCCcceEEEEEEeC
Q psy17247          4 TVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~   22 (41)
                      ++||||+|.|+..+++.+.
T Consensus         1 MyiGiDiGgT~i~~~l~d~   19 (117)
T d2ap1a2           1 MYYGFDIGGTKIALGVFDS   19 (117)
T ss_dssp             EEEEEEECSSEEEEEEEET
T ss_pred             CEEEEEECcceEEEEEEeC
Confidence            3699999999999999853

>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.0069  Score=28.61  Aligned_cols=21  Identities=19%  Similarity=0.469  Sum_probs=17.9

Q ss_pred             eEEEEeCCcceEEEEEEe-CCe
Q psy17247          4 TVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~-~~~   24 (41)
                      .+||||+|.|+..+++.+ +|+
T Consensus         2 ~~lgiDiGgT~i~~~l~d~~G~   23 (119)
T d2aa4a1           2 TTLAIDIGGTKLAAALIGADGQ   23 (119)
T ss_dssp             CEEEEEECSSEEEEEEECTTCC
T ss_pred             eEEEEEeCcCEEEEEEEcCCCC
Confidence            589999999999999994 443

>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Type II pantothenate kinase, CoaW
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.37  E-value=0.011  Score=29.95  Aligned_cols=19  Identities=21%  Similarity=0.267  Sum_probs=16.9

Q ss_pred             EEEeCCcceEEEEEEeCCe
Q psy17247          6 FGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         6 iGiD~GTtns~va~~~~~~   24 (41)
                      ||||+|.|+.-++++++++
T Consensus         3 iGIDiGGT~ik~~lvd~~g   21 (267)
T d2ewsa1           3 VGIDAGGTLIKIVQEQDNQ   21 (267)
T ss_dssp             EEEEECSSEEEEEEECSSC
T ss_pred             EEEEEChhhEEEEEEeCCC
Confidence            8999999999999996554

>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein YrrK (RuvX)
species: Bacillus subtilis [TaxId: 1423]

Probab=95.08  E-value=0.011  Score=29.41  Aligned_cols=20  Identities=20%  Similarity=0.524  Sum_probs=17.6

Q ss_pred             ceEEEEeCCcceEEEEEEeC
Q psy17247          3 KTVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~   22 (41)
                      +.++|||||+..+-+|+-+.
T Consensus         2 mriLgiD~G~kriGvAisd~   21 (140)
T d1vhxa_           2 LRILGLDLGTKTLGVALSDE   21 (140)
T ss_dssp             EEEEEEEECSSEEEEEEECT
T ss_pred             ceEEEEEeCCCEEEEEEecC
Confidence            47899999999999999853

>d3bexa1 c.55.1.13 (A:1-118) Type III pantothenate kinase, CoaX {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: CoaX-like
domain: Type III pantothenate kinase, CoaX
species: Thermotoga maritima [TaxId: 2336]

Probab=94.83  E-value=0.014  Score=27.46  Aligned_cols=20  Identities=30%  Similarity=0.483  Sum_probs=17.7

Q ss_pred             EEEEeCCcceEEEEEEeCCe
Q psy17247          5 VFGLYLGNSSASIGICRDGK   24 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~~~~   24 (41)
                      .+-||.|+|+..+|++++++
T Consensus         2 ~L~IDIGNT~ik~~l~~~~~   21 (118)
T d3bexa1           2 YLLVDVGNTHSVFSITEDGK   21 (118)
T ss_dssp             EEEEEECSSEEEEEEESSSS
T ss_pred             EEEEEECCCeEEEEEEECCE
Confidence            57899999999999997765

>d1hjra_ c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: RuvC resolvase
domain: RuvC resolvase
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.053  Score=27.23  Aligned_cols=25  Identities=16%  Similarity=0.373  Sum_probs=19.8

Q ss_pred             eEEEEeCCcceEEEEEE--eCCeEEEE
Q psy17247          4 TVFGLYLGNSSASIGIC--RDGKVEIL   28 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~--~~~~~~ii   28 (41)
                      .++|||-|++++-+|+.  .+++++.+
T Consensus         2 iILGIDPGl~~~G~avid~~~~~~~~v   28 (158)
T d1hjra_           2 IILGIDPGSRVTGYGVIRQVGRQLSYL   28 (158)
T ss_dssp             EEEEEECCSSEEEEEEEEEETTEEEEE
T ss_pred             EEEEEccCCCceEEEEEEeeCCEEEEE
Confidence            57899999999999997  35555544

>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Hypothetical protein SP2142
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.54  E-value=0.015  Score=27.41  Aligned_cols=21  Identities=24%  Similarity=0.409  Sum_probs=18.0

Q ss_pred             eEEEEeCCcceEEEEEEe-CCe
Q psy17247          4 TVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~-~~~   24 (41)
                      .+++||+|.|+-.+++.. +++
T Consensus         2 ~i~~iDiGgT~i~~~l~d~~g~   23 (114)
T d2gupa1           2 TIATIDIGGTGIKFASLTPDGK   23 (114)
T ss_dssp             CEEEEEEETTEEEEEEECTTCC
T ss_pred             eEEEEEeCcccEEEEEEcCCCC
Confidence            688999999999999995 443

>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein, YqgF homologue
species: Thermus thermophilus [TaxId: 274]

Probab=94.17  E-value=0.027  Score=26.52  Aligned_cols=19  Identities=16%  Similarity=0.300  Sum_probs=17.1

Q ss_pred             eEEEEeCCcceEEEEEEeC
Q psy17247          4 TVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~   22 (41)
                      .++|||+|+...-+|+-+.
T Consensus         2 riLglD~G~kriGiAisd~   20 (98)
T d1iv0a_           2 RVGALDVGEARIGLAVGEE   20 (98)
T ss_dssp             CEEEEEESSSEEEEEEECS
T ss_pred             cEEEEEcCCCEEEEEEecC
Confidence            6899999999999999853

>d2f9wa2 c.55.1.13 (A:1-114) Type III pantothenate kinase, CoaX {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: CoaX-like
domain: Type III pantothenate kinase, CoaX
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.79  E-value=0.065  Score=24.89  Aligned_cols=22  Identities=18%  Similarity=0.169  Sum_probs=18.7

Q ss_pred             eEEEEeCCcceEEEEEEeCCeE
Q psy17247          4 TVFGLYLGNSSASIGICRDGKV   25 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~~~~~   25 (41)
                      +.+-||.|+|+.-+|++++++.
T Consensus         1 M~LliDiGNT~iK~~~~~~~~~   22 (114)
T d2f9wa2           1 MILELDCGNSLIKWRVIEGAAR   22 (114)
T ss_dssp             EEEEEEECSSCEEEEEEETTTE
T ss_pred             CEEEEEECCCeEEEEEEECCeE
Confidence            3678999999999999987654

>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative fructokinase YhdR
species: Bacillus subtilis [TaxId: 1423]

Probab=93.46  E-value=0.041  Score=25.75  Aligned_cols=20  Identities=25%  Similarity=0.401  Sum_probs=17.1

Q ss_pred             EEEEeCCcceEEEEEEe-CCe
Q psy17247          5 VFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         5 ~iGiD~GTtns~va~~~-~~~   24 (41)
                      ++|||+|.|+-.+++.+ +++
T Consensus         2 ~~giDiGgT~i~~~l~d~~g~   22 (118)
T d1xc3a1           2 LGGIEAGGTKFVCAVGREDGT   22 (118)
T ss_dssp             EEEEEECSSEEEEEEECTTSC
T ss_pred             EEEEEeccCEEEEEEEcCCCC
Confidence            68999999999999995 444

>d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Cell division protein FtsA
species: Thermotoga maritima [TaxId: 2336]

Probab=93.37  E-value=0.099  Score=26.36  Aligned_cols=26  Identities=23%  Similarity=0.147  Sum_probs=20.9

Q ss_pred             eEEEEeCCcceEEEEEE--eCCeEEEEe
Q psy17247          4 TVFGLYLGNSSASIGIC--RDGKVEILA   29 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~--~~~~~~ii~   29 (41)
                      ...+||+|+++-+..+.  .+++.+++.
T Consensus         3 ~~~aiDIGs~kI~~~v~~~~~~~~~iig   30 (193)
T d1e4ft1           3 FYTSIDIGSRYIKGLVLGKRDQEWEALA   30 (193)
T ss_dssp             EEEEEEECSSEEEEEEEEEETTEEEEEE
T ss_pred             EEEEEEcCCCEEEEEEEEEcCCcEEEEE
Confidence            56899999999877665  677888774

>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.76  E-value=0.07  Score=24.96  Aligned_cols=22  Identities=9%  Similarity=0.126  Sum_probs=18.5

Q ss_pred             ceEEEEeCCcceEEEEEEe-CCe
Q psy17247          3 KTVFGLYLGNSSASIGICR-DGK   24 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~-~~~   24 (41)
                      ..++|||+|.++..+++.+ .|+
T Consensus         4 ~~~igidig~~~i~~~l~d~~G~   26 (128)
T d2hoea3           4 AYVLGIEVTRDEIAACLIDASMN   26 (128)
T ss_dssp             CEEEEEEECSSEEEEEEEETTCC
T ss_pred             EEEEEEEECCCEEEEEEEcCCCC
Confidence            4689999999999999994 444

>d2d0oa2 c.55.1.6 (A:1-92,A:255-403) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ATPase domain of dehydratase reactivase alpha subunit
domain: Diol dehydratase-reactivating factor large subunit DdrA
species: Klebsiella oxytoca [TaxId: 571]

Probab=91.32  E-value=0.18  Score=27.33  Aligned_cols=28  Identities=25%  Similarity=0.494  Sum_probs=21.9

Q ss_pred             CceEEEEeCCcceEEEEEEe---CCeEEEEe
Q psy17247          2 SKTVFGLYLGNSSASIGICR---DGKVEILA   29 (41)
Q Consensus         2 ~~~~iGiD~GTtns~va~~~---~~~~~ii~   29 (41)
                      ++.++|||.|++..-+|+.+   ++.++++.
T Consensus         1 M~~IaGiDIGNstTEvala~v~~~g~~~fl~   31 (241)
T d2d0oa2           1 MRYIAGIDIGNSSTEVALATLDEAGALTITH   31 (241)
T ss_dssp             CEEEEEEEECSSEEEEEEEEECTTCCEEEEE
T ss_pred             CceEEEEecCcchhhhheeeecCCCcEEEEe
Confidence            35788999999999999873   55666664

>d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ATPase domain of dehydratase reactivase alpha subunit
domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.08  E-value=0.059  Score=29.06  Aligned_cols=25  Identities=12%  Similarity=0.376  Sum_probs=18.4

Q ss_pred             eEEEEeCCcceEEEEEEe--CCeEEEE
Q psy17247          4 TVFGLYLGNSSASIGICR--DGKVEIL   28 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~--~~~~~ii   28 (41)
                      .++|+|+||+.-++.+.+  +++.+++
T Consensus         2 ii~glDIGtski~~~v~~~~~~~~~il   28 (239)
T d1nbwa2           2 LIAGIDIGNATTEVALASDYPQARAFV   28 (239)
T ss_dssp             EEEEEEECSSEEEEEEEECBTTBCCCC
T ss_pred             EEEEEEcCCCeEEEEEEEEcCCCEEEE
Confidence            367999999999998873  3444443

>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=90.88  E-value=0.095  Score=27.43  Aligned_cols=20  Identities=20%  Similarity=0.331  Sum_probs=17.4

Q ss_pred             ceEEEEeCCcceEEEEEEeC
Q psy17247          3 KTVFGLYLGNSSASIGICRD   22 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~~~   22 (41)
                      +..++||+|-||..+++++.
T Consensus         1 ~y~L~~DIGGT~ir~glvd~   20 (319)
T d1sz2a1           1 KYALVGDVGGTNARLALCDI   20 (319)
T ss_dssp             CEEEEEEEETTEEEEEEEET
T ss_pred             CEEEEEEEChhheeeEEEEC
Confidence            45799999999999999963

>d1czan3 c.55.1.3 (N:466-670) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Mammalian type I hexokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.76  E-value=0.035  Score=29.34  Aligned_cols=18  Identities=17%  Similarity=0.281  Sum_probs=16.0

Q ss_pred             ceEEEEeCCcceEEEEEE
Q psy17247          3 KTVFGLYLGNSSASIGIC   20 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~   20 (41)
                      ...++||||-||--|+..
T Consensus        61 G~fLalDlGGTn~Rv~~V   78 (205)
T d1czan3          61 GDFLALDLGGTNFRVLLV   78 (205)
T ss_dssp             EEEEEEEESSSSEEEEEE
T ss_pred             ceEEEEEecCceEEEEEE
Confidence            358999999999999986

>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ta0583-like
domain: Hypothetical protein Ta0583
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=89.23  E-value=0.13  Score=25.20  Aligned_cols=15  Identities=27%  Similarity=0.412  Sum_probs=12.5

Q ss_pred             eEEEEeCCcceEEEE
Q psy17247          4 TVFGLYLGNSSASIG   18 (41)
Q Consensus         4 ~~iGiD~GTtns~va   18 (41)
                      .++|||+|..+.-..
T Consensus         2 ~iigiD~G~g~tK~~   16 (164)
T d2fsja2           2 VVVGLDVGYGDTKVI   16 (164)
T ss_dssp             EEEEEEECSSEEEEE
T ss_pred             EEEEEEcCCcceEEE
Confidence            689999999887754

>d1v4sa1 c.55.1.3 (A:14-218) Glucokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Glucokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.11  E-value=0.28  Score=25.69  Aligned_cols=18  Identities=17%  Similarity=0.296  Sum_probs=16.1

Q ss_pred             ceEEEEeCCcceEEEEEE
Q psy17247          3 KTVFGLYLGNSSASIGIC   20 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~   20 (41)
                      ...++||||-||-.|+..
T Consensus        59 G~flalDlGGTn~Rv~~V   76 (205)
T d1v4sa1          59 GDFLSLDLGGTNFRVMLV   76 (205)
T ss_dssp             EEEEEEEESSSEEEEEEE
T ss_pred             ceEEEEecCCceEEEEEE
Confidence            458999999999999987

>d1bdga1 c.55.1.3 (A:13-222) Hexokinase {Blood fluke (Schistosoma mansoni) [TaxId: 6183]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Hexokinase
species: Blood fluke (Schistosoma mansoni) [TaxId: 6183]

Probab=88.05  E-value=0.26  Score=25.94  Aligned_cols=18  Identities=17%  Similarity=0.207  Sum_probs=16.2

Q ss_pred             ceEEEEeCCcceEEEEEE
Q psy17247          3 KTVFGLYLGNSSASIGIC   20 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~   20 (41)
                      ...++||||-||--|+..
T Consensus        66 G~fLalDlGGTn~Rv~~V   83 (208)
T d1bdga1          66 GNFLALDLGGTNYRVLSV   83 (208)
T ss_dssp             EEEEEEEESSSSEEEEEE
T ss_pred             ceEEEEEecCceEEEEEE
Confidence            358999999999999987

>d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Hexokinase
species: Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]

Probab=88.04  E-value=0.25  Score=25.96  Aligned_cols=18  Identities=11%  Similarity=0.300  Sum_probs=16.1

Q ss_pred             ceEEEEeCCcceEEEEEE
Q psy17247          3 KTVFGLYLGNSSASIGIC   20 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~   20 (41)
                      ..+++||||-||-.|+..
T Consensus        63 G~flalDlGGTnlRv~~V   80 (207)
T d1ig8a1          63 GDFLAIDLGGTNLRVVLV   80 (207)
T ss_dssp             EEEEEEEECSSEEEEEEE
T ss_pred             ceEEEEEecCceEEEEEE
Confidence            458999999999999987

>d1czan1 c.55.1.3 (N:16-222) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Mammalian type I hexokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.49  E-value=0.29  Score=25.63  Aligned_cols=18  Identities=33%  Similarity=0.220  Sum_probs=16.2

Q ss_pred             ceEEEEeCCcceEEEEEE
Q psy17247          3 KTVFGLYLGNSSASIGIC   20 (41)
Q Consensus         3 ~~~iGiD~GTtns~va~~   20 (41)
                      ...++||||-||-.|+..
T Consensus        63 G~flalDlGGTn~Rv~~V   80 (207)
T d1czan1          63 GDFIALDLGGSSFRILRV   80 (207)
T ss_dssp             EEEEEEEESSSSEEEEEE
T ss_pred             ceEEEEecCCceEEEEEE
Confidence            458999999999999987

>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Transcriptional regulator VC2007
species: Vibrio cholerae [TaxId: 666]

Probab=86.36  E-value=0.33  Score=22.33  Aligned_cols=18  Identities=17%  Similarity=0.364  Sum_probs=16.5

Q ss_pred             eEEEEeCCcceEEEEEEe
Q psy17247          4 TVFGLYLGNSSASIGICR   21 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~   21 (41)
                      .++|||+|.++..+++++
T Consensus         5 ~~lgi~ig~~~i~~~l~d   22 (128)
T d1z05a3           5 QFLSMRLGRGYLTIALHE   22 (128)
T ss_dssp             EEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEc
Confidence            579999999999999995

>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Mlc protein
species: Escherichia coli [TaxId: 562]

Probab=82.68  E-value=0.59  Score=21.53  Aligned_cols=18  Identities=6%  Similarity=0.137  Sum_probs=16.6

Q ss_pred             eEEEEeCCcceEEEEEEe
Q psy17247          4 TVFGLYLGNSSASIGICR   21 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~   21 (41)
                      .++|||+|.++-.+++.+
T Consensus         5 ~~l~i~i~~~~i~~~l~D   22 (129)
T d1z6ra2           5 HYLSLRISRGEIFLALRD   22 (129)
T ss_dssp             EEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEc
Confidence            589999999999999995

>d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Plasmid segregation protein ParM
species: Escherichia coli [TaxId: 562]

Probab=81.84  E-value=0.73  Score=22.82  Aligned_cols=18  Identities=6%  Similarity=-0.010  Sum_probs=15.6

Q ss_pred             eEEEEeCCcceEEEEEEe
Q psy17247          4 TVFGLYLGNSSASIGICR   21 (41)
Q Consensus         4 ~~iGiD~GTtns~va~~~   21 (41)
                      ++||||.|-+|.-++...
T Consensus         1 m~I~iD~Gy~nvK~a~~~   18 (157)
T d2zgya1           1 MLVFIDDGSTNIKLQWQE   18 (157)
T ss_dssp             CEEEEEECSSEEEEEEEC
T ss_pred             CEEEEecCCCcEEEEEec
Confidence            379999999999999764