Psyllid ID: psy17297

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450------
MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPKGFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGDHRIKPEKPVKTT
cccEEEEEcccccccccccEEEEcccccccccccccccccccccccEEEEEEccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccHHHHHHHHHHHccccccccEEEEcccccccccccccccccccccccccccEEEEEcHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHHHHHccccccEEEccccccHHHHHHHHHcccccHHHHHHHHHHHHHcccccccEEccccEEcccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
ccEEEEEEEcccccHHHHHHHHHHHHHccccccccccccccccccHEEEEEEccccccccEEEEEEcccccHHHEcccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccHHHHHHHHHHHHHccccccEEEEEEcccccccEEEccccHEEEHHHEEcccccEEEEccHHHHHHHHHHccccccccccHHHHHHHHHHHHcEEEcccccccHcHHHHHHHccccccEcccccccccccccccHHHHHccHHHHHHHHccHHHHHHHcccccccEEEEEEEEcccccHHHHHHHHHHHHcccccEEEEccccccEEEEEccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHcccccccccccccccc
MREIVHIQvgqcgnqtGVKFWEEISQEhglnemgryegtsdlQLERIQVYYNeaqggyiprailvdlepgtmdavrsgpygkmfrpdnflhgqsgaannwakghyTEGVELVDAVMDLTRREaencdcmqgfqvthslgggtgsgmGTLLLTKIREEypdrminafsvvpspkvsdtvvepYNAILSLSHlietsdetfcidneALYDICVRSlklnspsyrdlNHLVSATmcgittclrfpgqlnADLRKLAvnmvpfprlhffmsgnaplvspslidykaMSIGELTQELFDAKnmmvacdprhgkylTVATIFRGELSVKEIDDHIVNihnnnlpyyvewipnniktalcdiapkgfkmsgtfigNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTvegmdefefheagaNVEDLICEYQQYQEASIEDTVEIatsddekgdhrikpekpvktt
mreivhiqvgqcgnqtgVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVthslgggtgsGMGTLLLTKIREEYPDRMINAFsvvpspkvsDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPKGFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIatsddekgdhrikpekpvktt
MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVthslgggtgsgmgtllltKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFRGELSVKEiddhivnihnnnLPYYVEWIPNNIKTALCDIAPKGFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGDHRIKPEKPVKTT
***IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPKGFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASI***************************
*REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPKGFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQE******************************
MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPKGFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIA********************
MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPKGFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEAS****************************
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MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPKGFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGDHRIKPEKPVKTT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query456 2.2.26 [Sep-21-2011]
O17449447 Tubulin beta-1 chain OS=M N/A N/A 0.945 0.964 0.740 0.0
P11833447 Tubulin beta chain OS=Par N/A N/A 0.938 0.957 0.741 0.0
P30883445 Tubulin beta-4 chain OS=X N/A N/A 0.938 0.961 0.741 0.0
Q27U48447 Tubulin beta-1 chain OS=G N/A N/A 0.938 0.957 0.743 0.0
Q24560447 Tubulin beta-1 chain OS=D yes N/A 0.938 0.957 0.743 0.0
O44388444 Tubulin beta chain OS=Tri N/A N/A 0.940 0.966 0.741 0.0
P02554445 Tubulin beta chain OS=Sus yes N/A 0.938 0.961 0.738 0.0
P09244444 Tubulin beta-7 chain OS=G yes N/A 0.938 0.963 0.738 0.0
Q6GLE7444 Tubulin beta chain OS=Xen yes N/A 0.938 0.963 0.738 0.0
Q91575444 Tubulin beta chain OS=Xen N/A N/A 0.938 0.963 0.738 0.0
>sp|O17449|TBB1_MANSE Tubulin beta-1 chain OS=Manduca sexta PE=2 SV=1 Back     alignment and function desciption
 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/432 (74%), Positives = 376/432 (87%), Gaps = 1/432 (0%)

Query: 1   MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
           MREIVHIQ GQCGNQ G KFWE IS EHG++  G Y G SDLQLERI VYYNEA GG Y+
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 60

Query: 60  PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
           PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+ 
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 120 RREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVV 179
           R+EAE+CDC+QGFQ+THSLGGGTGSGMGTLL++KIREEYPDR++N +SVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVV 180

Query: 180 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 239
           EPYNA LS+  L+E +DET+CIDNEALYDIC R+LKL++P+Y DLNHLVS TM G+TTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCL 240

Query: 240 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMM 299
           RFPGQLNADLRKLAVNMVPFPRLHFFM G APL S     Y+A+++ ELTQ++FDAKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300

Query: 300 VACDPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPKG 359
            ACDPRHG+YLTVA IFRG +S+KE+D+ ++NI N N  Y+VEWIPNN+KTA+CDI P+G
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRG 360

Query: 360 FKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVEDLIC 419
            KMS TFIGN+TAIQ LF+RI +QF +MFRRKAFLHWYT EGMDE EF EA +N+ DL+ 
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 420 EYQQYQEASIED 431
           EYQQYQEA+ ++
Sbjct: 421 EYQQYQEATADE 432
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Manduca sexta (taxid: 7130)
>sp|P11833|TBB_PARLI Tubulin beta chain OS=Paracentrotus lividus PE=2 SV=1 Back     alignment and function description
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain OS=Xenopus laevis GN=tubb4 PE=2 SV=1 Back     alignment and function description
>sp|Q27U48|TBB1_GLOMM Tubulin beta-1 chain OS=Glossina morsitans morsitans PE=2 SV=1 Back     alignment and function description
>sp|Q24560|TBB1_DROME Tubulin beta-1 chain OS=Drosophila melanogaster GN=betaTub56D PE=1 SV=2 Back     alignment and function description
>sp|O44388|TBB_TRITR Tubulin beta chain OS=Trichuris trichiura PE=3 SV=1 Back     alignment and function description
>sp|P02554|TBB_PIG Tubulin beta chain OS=Sus scrofa PE=1 SV=1 Back     alignment and function description
>sp|P09244|TBB7_CHICK Tubulin beta-7 chain OS=Gallus gallus PE=2 SV=1 Back     alignment and function description
>sp|Q6GLE7|TBB5_XENTR Tubulin beta chain OS=Xenopus tropicalis GN=tubb PE=2 SV=1 Back     alignment and function description
>sp|Q91575|TBB5_XENLA Tubulin beta chain OS=Xenopus laevis GN=tubb PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query456
156389348442 predicted protein [Nematostella vectensi 0.929 0.959 0.724 0.0
328787631448 PREDICTED: tubulin beta-3 chain-like iso 0.967 0.984 0.730 0.0
383861487447 PREDICTED: tubulin beta-1 chain-like [Me 0.962 0.982 0.735 0.0
313237720445 unnamed protein product [Oikopleura dioi 0.938 0.961 0.745 0.0
346468265445 hypothetical protein [Amblyomma maculatu 0.938 0.961 0.745 0.0
74223737444 unnamed protein product [Mus musculus] 0.938 0.963 0.736 0.0
391336592445 PREDICTED: tubulin beta-1 chain-like [Me 0.938 0.961 0.750 0.0
389608729457 beta-tubulin [Papilio xuthus] 0.969 0.967 0.723 0.0
442753005446 Putative beta tubulin [Ixodes ricinus] 0.938 0.959 0.748 0.0
346468267445 hypothetical protein [Amblyomma maculatu 0.938 0.961 0.742 0.0
>gi|156389348|ref|XP_001634953.1| predicted protein [Nematostella vectensis] gi|156222042|gb|EDO42890.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/429 (72%), Positives = 367/429 (85%), Gaps = 5/429 (1%)

Query: 1   MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
           MREIVH+Q GQCGNQ G KFW     EHG++  G Y G SDLQLERI VYYNEA GG Y+
Sbjct: 1   MREIVHLQAGQCGNQIGAKFW----NEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 56

Query: 60  PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
           PRA+LVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+ 
Sbjct: 57  PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 116

Query: 120 RREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVV 179
           R+EAE+CDC+QGFQ+THSLGGGTGSGM TLL+ KIREEYPDR++N FSVVPSPKVSDTVV
Sbjct: 117 RKEAESCDCIQGFQLTHSLGGGTGSGMVTLLILKIREEYPDRIMNTFSVVPSPKVSDTVV 176

Query: 180 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 239
           EPYNA LS+  L+E +DET+CIDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCL
Sbjct: 177 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 236

Query: 240 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMM 299
           RFPGQLNADLRKLAVNMVPFPRL FFM G APL S     Y+A+++ ELTQ++FDAKNMM
Sbjct: 237 RFPGQLNADLRKLAVNMVPFPRLPFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 296

Query: 300 VACDPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPKG 359
            ACDP HG+YLTVA +FRG +S+KE+D+ ++N+ N N  Y+VEWIPNN+KTA+CDI P+G
Sbjct: 297 AACDPLHGRYLTVAAMFRGRMSMKELDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 356

Query: 360 FKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVEDLIC 419
            KMS TFIGN+TAIQ LF+RI +QF +MFRRKAFLHWYT EGMDE EF EA +N+ DL+ 
Sbjct: 357 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 416

Query: 420 EYQQYQEAS 428
           EYQQYQ+A+
Sbjct: 417 EYQQYQDAT 425

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota
>gi|328787631|ref|XP_003250979.1| PREDICTED: tubulin beta-3 chain-like isoform 1 [Apis mellifera] gi|340713277|ref|XP_003395171.1| PREDICTED: tubulin beta-3 chain-like isoform 2 [Bombus terrestris] gi|350409009|ref|XP_003488581.1| PREDICTED: tubulin beta-3 chain-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|383861487|ref|XP_003706217.1| PREDICTED: tubulin beta-1 chain-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|313237720|emb|CBY12859.1| unnamed protein product [Oikopleura dioica] Back     alignment and taxonomy information
>gi|346468265|gb|AEO33977.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
>gi|74223737|dbj|BAE28709.1| unnamed protein product [Mus musculus] Back     alignment and taxonomy information
>gi|391336592|ref|XP_003742663.1| PREDICTED: tubulin beta-1 chain-like [Metaseiulus occidentalis] Back     alignment and taxonomy information
>gi|389608729|dbj|BAM17974.1| beta-tubulin [Papilio xuthus] Back     alignment and taxonomy information
>gi|442753005|gb|JAA68662.1| Putative beta tubulin [Ixodes ricinus] Back     alignment and taxonomy information
>gi|346468267|gb|AEO33978.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query456
UNIPROTKB|G1K342445 TUBB3 "Uncharacterized protein 0.973 0.997 0.674 1.2e-168
UNIPROTKB|F1NYB1444 TUBB3 "Uncharacterized protein 0.969 0.995 0.677 2e-168
UNIPROTKB|Q3MHM5445 TUBB4B "Tubulin beta-4B chain" 0.969 0.993 0.677 2e-168
UNIPROTKB|L7N0I7445 TUBB4B "Uncharacterized protei 0.969 0.993 0.677 2e-168
UNIPROTKB|P68371445 TUBB4B "Tubulin beta-4B chain" 0.969 0.993 0.677 2e-168
UNIPROTKB|F2Z571445 TUBB4B "Uncharacterized protei 0.969 0.993 0.677 2e-168
MGI|MGI:1915472445 Tubb4b "tubulin, beta 4B class 0.969 0.993 0.677 2e-168
FB|FBgn0003887447 betaTub56D "beta-Tubulin at 56 0.973 0.993 0.674 4.1e-168
ZFIN|ZDB-GENE-051113-284472 zgc:123194 "zgc:123194" [Danio 0.969 0.936 0.674 4.1e-168
RGD|735101445 Tubb4b "tubulin, beta 4B class 0.969 0.993 0.674 6.6e-168
UNIPROTKB|G1K342 TUBB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 1640 (582.4 bits), Expect = 1.2e-168, P = 1.2e-168
 Identities = 300/445 (67%), Positives = 354/445 (79%)

Query:     1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
             MREIVH+Q GQCGNQ G KFWE IS EHG++  G Y G SDLQLERI VYYNEA GG Y+
Sbjct:     1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60

Query:    60 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
             PRA+LVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+ 
Sbjct:    61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query:   120 RREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVSDTVV 179
             R+EAE+CDC+QGFQ+                  KIREEYPDR++N FSVVPSPKVSDTVV
Sbjct:   121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query:   180 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 239
             EPYNA LS+  L+E +DET+CIDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCL
Sbjct:   181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query:   240 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMM 299
             RFPGQLNADLRKLAVNMVPFPRLHFFM G APL S     Y+A+++ ELTQ++FDAKNMM
Sbjct:   241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300

Query:   300 VACDPRHGKYLTVATIFRGELSVKEXXXXXXXXXXXXLPYYVEWIPNNIKTALCDIAPKG 359
              ACDPRHG+YLTVA +FRG +S+KE              Y+VEWIPNN+KTA+CDI P+G
Sbjct:   301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360

Query:   360 FKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVEDLIC 419
              KMS TFIGN+TAIQ LF+RI +QF +MFRRKAFLHWYT EGMDE EF EA +N+ DL+ 
Sbjct:   361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query:   420 EYQQYQEASIEDTVEIATSDDEKGD 444
             EYQQYQ+A+ E+  E     +E+ +
Sbjct:   421 EYQQYQDATAEEEGEFEEEAEEEAE 445
GO:0003924 "GTPase activity" evidence=IEA
GO:0005200 "structural constituent of cytoskeleton" evidence=IEA
GO:0007017 "microtubule-based process" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0005525 "GTP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0005874 "microtubule" evidence=IEA
GO:0005886 "plasma membrane" evidence=IEA
UNIPROTKB|F1NYB1 TUBB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3MHM5 TUBB4B "Tubulin beta-4B chain" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|L7N0I7 TUBB4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P68371 TUBB4B "Tubulin beta-4B chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z571 TUBB4B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1915472 Tubb4b "tubulin, beta 4B class IVB" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0003887 betaTub56D "beta-Tubulin at 56D" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-051113-284 zgc:123194 "zgc:123194" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|735101 Tubb4b "tubulin, beta 4B class IVb" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ERD7TBB3_MOUSENo assigned EC number0.71230.97360.9866noN/A
Q6B856TBB2B_BOVINNo assigned EC number0.73650.93850.9617yesN/A
Q9YHC3TBB1_GADMONo assigned EC number0.73190.93850.9617N/AN/A
Q4R5B3TBB2A_MACFANo assigned EC number0.73420.93850.9617N/AN/A
Q13885TBB2A_HUMANNo assigned EC number0.73420.93850.9617yesN/A
Q6P9T8TBB4B_RATNo assigned EC number0.73770.93420.9573yesN/A
P09203TBB1_CHICKNo assigned EC number0.73420.93850.9617yesN/A
P52275TBB2_CAEELNo assigned EC number0.71950.95170.9644noN/A
P32882TBB2_CHICKNo assigned EC number0.73650.93850.9617yesN/A
P04350TBB4A_HUMANNo assigned EC number0.73300.93420.9594yesN/A
Q2KJD0TBB5_BOVINNo assigned EC number0.73890.93850.9639yesN/A
P99024TBB5_MOUSENo assigned EC number0.73890.93850.9639yesN/A
Q24560TBB1_DROMENo assigned EC number0.74350.93850.9574yesN/A
P02554TBB_PIGNo assigned EC number0.73890.93850.9617yesN/A
Q7JJU6TBB5_PANTRNo assigned EC number0.73890.93850.9639yesN/A
Q5R943TBB5_PONABNo assigned EC number0.73890.93850.9639yesN/A
Q3KRE8TBB2B_RATNo assigned EC number0.73650.93850.9617yesN/A
P68371TBB4B_HUMANNo assigned EC number0.74000.93420.9573yesN/A
P41387TBB_ONCGINo assigned EC number0.71390.96270.9887N/AN/A
P85108TBB2A_RATNo assigned EC number0.73420.93850.9617yesN/A
Q27U48TBB1_GLOMMNo assigned EC number0.74350.93850.9574N/AN/A
P41937TBB4_CAEELNo assigned EC number0.71710.96710.9932noN/A
Q9D6F9TBB4A_MOUSENo assigned EC number0.73300.93420.9594yesN/A
P09206TBB3_CHICKNo assigned EC number0.72960.93850.9617yesN/A
P69893TBB5_CRIGRNo assigned EC number0.73890.93850.9639yesN/A
P68372TBB4B_MOUSENo assigned EC number0.74000.93420.9573yesN/A
P69895TBB5_MACMUNo assigned EC number0.73890.93850.9639yesN/A
P69897TBB5_RATNo assigned EC number0.73890.93850.9639yesN/A
O44388TBB_TRITRNo assigned EC number0.74180.94070.9662N/AN/A
Q3ZBU7TBB4A_BOVINNo assigned EC number0.73300.93420.9594yesN/A
P09244TBB7_CHICKNo assigned EC number0.73890.93850.9639yesN/A
P09652TBB4_CHICKNo assigned EC number0.70600.98240.9977noN/A
O17449TBB1_MANSENo assigned EC number0.74070.94510.9642N/AN/A
Q9NFZ6TBB2_ECHMUNo assigned EC number0.73650.93850.9617N/AN/A
Q767L7TBB5_PIGNo assigned EC number0.73890.93850.9639yesN/A
Q6GLE7TBB5_XENTRNo assigned EC number0.73890.93850.9639yesN/A
Q4R4X8TBB4A_MACFANo assigned EC number0.73300.93420.9594N/AN/A
Q4QRB4TBB3_RATNo assigned EC number0.71230.97360.9866noN/A
P11833TBB_PARLINo assigned EC number0.74120.93850.9574N/AN/A
Q9BVA1TBB2B_HUMANNo assigned EC number0.73650.93850.9617yesN/A
Q9CWF2TBB2B_MOUSENo assigned EC number0.73650.93850.9617yesN/A
Q91240TBB_PSEAMNo assigned EC number0.72960.93850.9617N/AN/A
Q91575TBB5_XENLANo assigned EC number0.73890.93850.9639N/AN/A
P07437TBB5_HUMANNo assigned EC number0.73890.93850.9639yesN/A
P13602TBB2_XENLANo assigned EC number0.72620.94290.9706N/AN/A
Q3MHM5TBB4B_BOVINNo assigned EC number0.74000.93420.9573yesN/A
Q94571TBB2_HOMAMNo assigned EC number0.70040.93850.9469N/AN/A
P30883TBB4_XENLANo assigned EC number0.74120.93850.9617N/AN/A
Q7TMM9TBB2A_MOUSENo assigned EC number0.73420.93850.9617yesN/A
P36221TBB1_NOTCONo assigned EC number0.73190.93850.9596N/AN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query456
cd02187425 cd02187, beta_tubulin, The tubulin superfamily inc 0.0
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 0.0
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 0.0
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 0.0
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 1e-161
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 1e-148
PTZ00335448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 1e-139
PLN00221450 PLN00221, PLN00221, tubulin alpha chain; Provision 1e-131
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 1e-129
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 1e-125
PLN00222454 PLN00222, PLN00222, tubulin gamma chain; Provision 1e-106
cd02190379 cd02190, epsilon_tubulin, The tubulin superfamily 1e-104
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 1e-103
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 1e-75
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 3e-74
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 5e-70
pfam03953126 pfam03953, Tubulin_C, Tubulin C-terminal domain 2e-57
smart00865120 smart00865, Tubulin_C, Tubulin/FtsZ family, C-term 2e-19
cd02202349 cd02202, FtsZ_type2, FtsZ is a GTPase that is simi 5e-09
cd06060493 cd06060, misato, Human Misato shows similarity wit 5e-08
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information 
 Score =  846 bits (2187), Expect = 0.0
 Identities = 315/425 (74%), Positives = 367/425 (86%), Gaps = 1/425 (0%)

Query: 2   REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIP 60
           REIVHIQ GQCGNQ G KFWE IS EHGL+  G Y+G SDLQLERI VY+NEA GG Y+P
Sbjct: 1   REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVP 60

Query: 61  RAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTR 120
           RAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG EL+D+V+D+ R
Sbjct: 61  RAILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 120

Query: 121 REAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVE 180
           +EAE+CDC+QGFQ+THSLGGGTGSGMGTLL++KIREEYPDR++  FSV PSPKVSDTVVE
Sbjct: 121 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFPSPKVSDTVVE 180

Query: 181 PYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLR 240
           PYNA LS+  L+E SDETFCIDNEALYDIC R+LKL +P+Y DLNHLVSA M GITTCLR
Sbjct: 181 PYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLR 240

Query: 241 FPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMV 300
           FPGQLN+DLRKLAVNMVPFPRLHFFM G APL S     Y+A+++ ELTQ++FDAKNMM 
Sbjct: 241 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMA 300

Query: 301 ACDPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPKGF 360
           ACDPRHG+YLT A IFRG +S+KE+D+ ++N+ N N  Y+VEWIPNN+KTA+CDI P+G 
Sbjct: 301 ACDPRHGRYLTAAAIFRGRVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGL 360

Query: 361 KMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICE 420
           KMS TFIGN+TAIQ LF+RI +QF +MFRRKAFLHWYT EGMDE EF EA +N+ DL+ E
Sbjct: 361 KMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 420

Query: 421 YQQYQ 425
           YQQYQ
Sbjct: 421 YQQYQ 425

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Length = 425
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain Back     alignment and domain information
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 456
COG5023443 Tubulin [Cytoskeleton] 100.0
PLN00221450 tubulin alpha chain; Provisional 100.0
PTZ00335448 tubulin alpha chain; Provisional 100.0
PTZ00010445 tubulin beta chain; Provisional 100.0
PLN00220447 tubulin beta chain; Provisional 100.0
PLN00222454 tubulin gamma chain; Provisional 100.0
cd02188431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
cd02187425 beta_tubulin The tubulin superfamily includes five 100.0
cd02186434 alpha_tubulin The tubulin superfamily includes fiv 100.0
PTZ00387465 epsilon tubulin; Provisional 100.0
KOG1374|consensus448 100.0
cd02189446 delta_tubulin The tubulin superfamily includes fiv 100.0
cd02190379 epsilon_tubulin The tubulin superfamily includes f 100.0
cd06059382 Tubulin The tubulin superfamily includes five dist 100.0
KOG1376|consensus407 100.0
KOG1375|consensus369 100.0
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
cd06060493 misato Human Misato shows similarity with Tubulin/ 100.0
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 100.0
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 100.0
KOG2530|consensus483 100.0
cd02202349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.97
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.94
TIGR00065349 ftsZ cell division protein FtsZ. This family consi 99.92
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.92
PF03953126 Tubulin_C: Tubulin C-terminal domain; InterPro: IP 99.9
PRK13018378 cell division protein FtsZ; Provisional 99.9
PF14881180 Tubulin_3: Tubulin domain 99.89
PRK09330384 cell division protein FtsZ; Validated 99.84
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 99.54
COG0206338 FtsZ Cell division GTPase [Cell division and chrom 99.31
smart00865120 Tubulin_C Tubulin/FtsZ family, C-terminal domain. 98.41
PF13809345 Tubulin_2: Tubulin like 97.18
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=4.1e-132  Score=956.23  Aligned_cols=434  Identities=51%  Similarity=0.946  Sum_probs=425.2

Q ss_pred             CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccC-CCcccceeEEeCCCCCeeccccccC
Q psy17297          1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSGP   79 (456)
Q Consensus         1 M~EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~-~~~~~pR~l~vD~e~~~i~~i~~~~   79 (456)
                      |||||+||+||||||||.+||+++|.||+|+++|.+.+..+...++.++||+|+ .++|+||||+||+||+||+.+++++
T Consensus         1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~   80 (443)
T COG5023           1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP   80 (443)
T ss_pred             CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence            999999999999999999999999999999999998877777778999999999 8999999999999999999999999


Q ss_pred             CCcccCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCC
Q psy17297         80 YGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYP  159 (456)
Q Consensus        80 ~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp  159 (456)
                      |+.+|+|+|++.+++|+|||||+|+|+.|+++.|+++|+|||++|.||.||||+++||+|||||||+|+.|+|.|++|||
T Consensus        81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp  160 (443)
T COG5023          81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP  160 (443)
T ss_pred             cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCccc
Q psy17297        160 DRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL  239 (456)
Q Consensus       160 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~~~  239 (456)
                      ||.+.+|+|+|.++.++++|||||++|+++.|.|+||+++++||++|+++|.+.+++++|+|.++|++||++++++|.++
T Consensus       161 kK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtsl  240 (443)
T COG5023         161 KKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSL  240 (443)
T ss_pred             hhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhee
Confidence            99999999999989999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcchhHHhhhhcccccCCcccccccCccCcCCcccccccCCHHHHHHhhhccCccccccCCCCCceeeeeeccccc
Q psy17297        240 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFRGE  319 (456)
Q Consensus       240 r~~~~~n~~l~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~  319 (456)
                      ||||++|.||++|.+||+|||++||+.++|+|+++..+..+++.|+.++++++|+++|+|.+|+|+.|+|++++.++||+
T Consensus       241 RfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~  320 (443)
T COG5023         241 RFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRGD  320 (443)
T ss_pred             ecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhhhccCCCCceeeeccCceeeeeecCCC---CCCceeEEEeecCcccHHHHHHHHHHHhhccccccchhh
Q psy17297        320 LSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAP---KGFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHW  396 (456)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~p---~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~krAflH~  396 (456)
                      +.++++.+.+.+++.|++.+|++|+|+++++++|..+|   .+.+.++++|+|+|+|++.|+++.++|++||+|||||||
T Consensus       321 v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhw  400 (443)
T COG5023         321 VDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHW  400 (443)
T ss_pred             CCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999999   678899999999999999999999999999999999999


Q ss_pred             hccCCCChhhHHHHHHHHHHHHHHHHHHhhcCcccccc
Q psy17297        397 YTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVE  434 (456)
Q Consensus       397 Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~~~~~  434 (456)
                      |.++||||+||.||++++++|.++|++++++.++++.|
T Consensus       401 Y~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~~  438 (443)
T COG5023         401 YVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEE  438 (443)
T ss_pred             HhhccCcccchhhHHHHHHHHHHHHHHhccccccchhh
Confidence            99999999999999999999999999999998866554

>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>KOG1374|consensus Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376|consensus Back     alignment and domain information
>KOG1375|consensus Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>KOG2530|consensus Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>PF13809 Tubulin_2: Tubulin like Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query456
1ffx_B445 Tubulin:stathmin-Like Domain Complex Length = 445 0.0
2xrp_A445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 0.0
4i4t_B445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 0.0
1tub_B427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 0.0
3ryc_B445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 0.0
1z2b_B445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 0.0
4drx_B431 Gtp-Tubulin In Complex With A Darpin Length = 431 0.0
4f61_B445 Tubulin:stathmin-Like Domain Complex Length = 445 0.0
3du7_B445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 0.0
4ffb_B463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 1e-168
3ryc_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 3e-84
4i4t_A450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 3e-84
1sa0_A451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 5e-84
4drx_A437 Gtp-Tubulin In Complex With A Darpin Length = 437 5e-84
1z2b_A448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 6e-84
3hkb_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 7e-84
3du7_A449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 9e-84
1ffx_A451 Tubulin:stathmin-Like Domain Complex Length = 451 1e-83
1tub_A440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 2e-83
2xrp_B452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 2e-83
1jff_A451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 2e-83
4ffb_A447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 4e-83
2btq_B426 Structure Of Btubab Heterodimer From Prosthecobacte 4e-76
1z5v_A474 Crystal Structure Of Human Gamma-Tubulin Bound To G 4e-68
3cb2_A475 Crystal Structure Of Human Gamma-Tubulin Bound To G 1e-67
2bto_A473 Structure Of Btuba From Prosthecobacter Dejongeii L 7e-67
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure 
Iteration: 1

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 297/429 (69%), Positives = 346/429 (80%), Gaps = 1/429 (0%)
Query: 1   MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
           MREIVHIQ GQCGNQ G KFWE IS EHG++  G Y G SDLQLERI VYYNEA G  Y+
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 60  PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
           PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+ 
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 120 RREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVSDTVV 179
           R+E+E+CDC+QGFQ+                  KIREEYPDR++N FSVVPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 180 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 239
           EPYNA LS+  L+E +DET+CIDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 240 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMM 299
           RFPGQLNADLRKLAVNMVPFPRLHFFM G APL S     Y+A+++ ELTQ++FDAKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
Query: 300 VACDPRHGKYLTVATIFRGELSVKEXXXXXXXXXXXXLPYYVEWIPNNIKTALCDIAPKG 359
            ACDPRHG+YLTVA +FRG +S+KE              Y+VEWIPNN+KTA+CDI P+G
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 360 FKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVEDLIC 419
            KMS TFIGN+TAIQ LF+RI +QF +MFRRKAFLHWYT EGMDE EF EA +N+ DL+ 
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 420 EYQQYQEAS 428
           EYQQYQ+A+
Sbjct: 421 EYQQYQDAT 429
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query456
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 0.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 0.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 0.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 0.0
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 0.0
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 3e-06
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
 Score =  721 bits (1862), Expect = 0.0
 Identities = 319/442 (72%), Positives = 378/442 (85%), Gaps = 1/442 (0%)

Query: 1   MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
           MREIVHIQ GQCGNQ G KFWE IS EHG++  G Y G SDLQLERI VYYNEA G  Y+
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60

Query: 60  PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
           PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+ 
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 120 RREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVV 179
           R+E+E+CDC+QGFQ+THSLGGGTGSGMGTLL++KIREEYPDR++N FSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180

Query: 180 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 239
           EPYNA LS+  L+E +DET+ IDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 240 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMM 299
           RFPGQLNADLRKLAVNMVPFPRLHFFM G APL S     Y+A+++ ELTQ++FD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300

Query: 300 VACDPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPKG 359
            ACDPRHG+YLTVATIFRG +S+KE+D+ ++NI N N  Y+VEWIPNN+KTA+CDI P+G
Sbjct: 301 AACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRG 360

Query: 360 FKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVEDLIC 419
            KMS TFIGN+TAIQ LF+RI +QF +MFRRKAFLHWYT EGMDE EF EA +N+ DL+ 
Sbjct: 361 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 420 EYQQYQEASIEDTVEIATSDDE 441
           EYQQYQ+A+ ++  E    + E
Sbjct: 421 EYQQYQDATADEQGEFEEEEGE 442
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Length = 360 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query456
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
1w5f_A353 Cell division protein FTSZ; complete proteome, GTP 100.0
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 100.0
2r75_1338 Cell division protein FTSZ; GTPase, tubulin-like, 100.0
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
2vaw_A394 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
1rq2_A382 Cell division protein FTSZ; cell cycle, tubulin, G 100.0
2vxy_A382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 100.0
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 100.0
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.96
4dxd_A396 Cell division protein FTSZ; rossmann fold, GTPase, 99.96
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 99.7
3r4v_A315 Putative uncharacterized protein; tubulin, unknown 99.0
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 96.79
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
Probab=100.00  E-value=3.4e-123  Score=954.42  Aligned_cols=434  Identities=40%  Similarity=0.750  Sum_probs=414.0

Q ss_pred             CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcch--hccccccccccC-CCcccceeEEeCCCCCeeccccc
Q psy17297          1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDL--QLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRS   77 (456)
Q Consensus         1 M~EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~F~e~-~~~~~pR~l~vD~e~~~i~~i~~   77 (456)
                      |||||+||+||||||||++||+++|.||+|+++|.+.++++.  ..+++++||+|+ .++|+||||+|||||++|++++.
T Consensus         1 mrEii~iqvGQcGnQIG~~~We~~~~EHgi~~~g~~~~~~~~~~~~~~~~~fF~e~~~gk~vPRavlvDlEp~vid~v~~   80 (451)
T 3ryc_A            1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT   80 (451)
T ss_dssp             CCCEEEEEEHHHHHHHHHHHHHHHHHHHTCCTTSCCCCC-------CGGGGTEEECTTSCEEESEEEEESSSHHHHHHHH
T ss_pred             CceEEEEeccCchhHHHHHHHHHHHhhcCCCCCCCcCCcccccccccchhhhcccCCCCccccceeeecCCcchhheeee
Confidence            999999999999999999999999999999999998766543  467889999999 89999999999999999999999


Q ss_pred             cCCCcccCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhh
Q psy17297         78 GPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREE  157 (456)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~de  157 (456)
                      ++++.+|+|++++++++|+|||||+|||+.|+++.|+++|+||+++|+||+||||+++||+|||||||+|+.|+|.|+++
T Consensus        81 g~~~~lf~p~~~i~gk~gAgNNwA~G~yt~G~e~~d~v~d~IRk~~E~cD~lqGF~i~hSlgGGTGSG~gs~lle~L~~e  160 (451)
T 3ryc_A           81 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVD  160 (451)
T ss_dssp             STTTTTSCGGGEEECSSCCTTCHHHHHHTSHHHHHHHHHHHHHHHHHTCSSCCEEEEEEESSSHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCHHHeeeccccccCCCCeeecccchHhHHHHHHHHHHHHHcCCCccceEEEeccCCCCCccHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCc
Q psy17297        158 YPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITT  237 (456)
Q Consensus       158 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~  237 (456)
                      ||++++++++|+|++..++++++|||++|++++|.+++|+++++||++|+++|.+.+++..|+|.++|++||++++++|.
T Consensus       161 y~kk~~~~~~v~P~~~~s~~vvepYNa~Lsl~~L~e~sD~~~~idNeaL~~ic~~~l~i~~p~y~~lN~lIa~~~s~iT~  240 (451)
T 3ryc_A          161 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA  240 (451)
T ss_dssp             TTTCEEEEEEEECCTTTCCCTTHHHHHHHHHHHHGGGCSEEEEEEHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCcceEEEEEEecCCCcccccceehHHHHHHHHHHhcccceeEeccHHHHHHHHHhccCCCCCchhhHHHHHhccccccc
Confidence            99999999999999878999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcchhHHhhhhcccccCCcccccccCccCcCCcccccccCCHHHHHHhhhccCccccccCCCCCceeeeeeccc
Q psy17297        238 CLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFR  317 (456)
Q Consensus       238 ~~r~~~~~n~~l~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R  317 (456)
                      ++||||++|.|+++|.+||||||++||++++|+|+++..+..++++++.+|++++|+++|+|++|+|++|+|||+++++|
T Consensus       241 slRf~G~lN~Dl~~l~tnLVP~PrlHF~~~s~aPl~s~~~~~~~~~sv~elt~~~f~~~n~m~~~dp~~gky~a~~~~~R  320 (451)
T 3ryc_A          241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR  320 (451)
T ss_dssp             HHHTTCSSSCSHHHHHHHHCSSSSCCCCEEEEECCCBSSSCCCCCCCHHHHHHHTTCGGGBSSCCCGGGSCEEEEEEEEE
T ss_pred             ccccCcccccCHHHHhhccCCCCceeeeccccCccccccccccccCCHHHHHHHHhccccceEecCCCCCchheehhhcc
Confidence            99999999999999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             ccCChHHHHHHHhhhccCCCCceeeeccCceeeeeecCCCC--------CCceeEEEeecCcccHHHHHHHHHHHhhccc
Q psy17297        318 GELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPK--------GFKMSGTFIGNTTAIQGLFQRIMDQFCSMFR  389 (456)
Q Consensus       318 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~p~--------~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~  389 (456)
                      |++.++++.+.+.+++.+++++|++|+|++||+++|.+||.        +..+++++|+|+|+|.+.|+++.++|++||+
T Consensus       321 G~v~~~dv~~~i~~ik~k~~~~Fv~W~p~~~kv~i~~~pP~~~p~~~la~~~~s~~~lsNsTaI~~~f~rl~~kFd~m~~  400 (451)
T 3ryc_A          321 GDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA  400 (451)
T ss_dssp             ESCCHHHHHHHHHHHHHHCCCCBCTTSCEEEEEEEECSCCCCCTTSSBCCCSEEEEEEEEEGGGHHHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHhhcCCcceEEEccCceeeeeeccCCccCCCccccccceeeEEecCchHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999997        5679999999999999999999999999999


Q ss_pred             cccchhhhccCCCChhhHHHHHHHHHHHHHHHHHHhhcCcccccc
Q psy17297        390 RKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVE  434 (456)
Q Consensus       390 krAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~~~~~  434 (456)
                      ||||||||++|||||+||.||+++|++|+++|++++.+..|+|+|
T Consensus       401 krAFvHwY~~eGmee~eF~EA~e~l~~L~~eY~~~~~~~~~~~~~  445 (451)
T 3ryc_A          401 KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGE  445 (451)
T ss_dssp             TTTTTHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred             cceeHhhhcCCccchhhHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence            999999999999999999999999999999999999887654443
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 456
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 1e-125
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 1e-113
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 1e-108
d1tubb2184 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su 6e-81
d1tuba2195 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S 4e-77
d2btoa2180 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth 2e-72
d1ofua1198 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Ps 6e-05
d1w5fa1194 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Th 0.001
d1rq2a1198 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Myc 0.003
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  361 bits (929), Expect = e-125
 Identities = 188/243 (77%), Positives = 216/243 (88%), Gaps = 1/243 (0%)

Query: 1   MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
           MREIVHIQ GQCGNQ G KFWE IS EHG++  G Y G SDLQLERI VYYNEA G  Y+
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60

Query: 60  PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
           PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+ 
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 120 RREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVV 179
           R+E+E+CDC+QGFQ+THSLGGGTGSGMGTLL++KIREEYPDR++N FSVVPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 180 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 239
           EPYNA LS+  L+E +DET+CIDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 240 RFP 242
           RFP
Sbjct: 241 RFP 243
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184 Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195 Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180 Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Length = 198 Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Length = 194 Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Length = 198 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query456
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1tuba2195 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb2184 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa2180 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 99.61
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 99.61
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 99.57
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 99.56
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.8e-76  Score=562.78  Aligned_cols=242  Identities=77%  Similarity=1.335  Sum_probs=235.5

Q ss_pred             CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccC-CCcccceeEEeCCCCCeeccccccC
Q psy17297          1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSGP   79 (456)
Q Consensus         1 M~EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~-~~~~~pR~l~vD~e~~~i~~i~~~~   79 (456)
                      |||||+||+||||||||.+||+++++||++++++....+.+....++++||++. .++|+||||+||+||++|++++.++
T Consensus         1 MrEiI~iqvGQcGnQIG~~fw~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~Ep~vi~~i~~~~   80 (243)
T d1tubb1           1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGP   80 (243)
T ss_dssp             CCEEEEEECHHHHHHHHHHHGGGTTTSCCSSCCCSSSSCCCCSSCCSSCCSSTTTTSTTCCCCEECCSSSHHHHHHSSSS
T ss_pred             CCcEEEEeccChHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchhccccccccCCCCccccceeEecCCcchhhhhccCc
Confidence            999999999999999999999999999999999988776666777889999999 8899999999999999999999999


Q ss_pred             CCcccCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCC
Q psy17297         80 YGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYP  159 (456)
Q Consensus        80 ~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp  159 (456)
                      ++++|+|++++.+++|+|||||+|||..|+++.|.++|+|||++|+||++|||+++||++||||||+|++|+|.|+|+||
T Consensus        81 ~~~~f~~~~~i~~~~gagNNwA~Gy~~~G~~~~d~i~d~iRk~~E~cD~l~gf~~~hSl~GGTGSGlGs~l~e~L~d~yp  160 (243)
T d1tubb1          81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP  160 (243)
T ss_dssp             SCCCCSSSCCCCTTCCCCSSTHHHHTSHHHHHHHHHHHHHHHHHHSSSCEEEEEEECCTTCSTTTTTHHHHHHHHHHHCS
T ss_pred             cccccCccceEEcccCcccceeeeeeccCHHHHHHHHHHHHHHHHhCCCcCceEEEeeccCccccchHHHHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCccc
Q psy17297        160 DRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL  239 (456)
Q Consensus       160 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~~~  239 (456)
                      ++.+++++|+|++..+++++||||++|+|++|.++||++++|||++|+++|.+.+++..|+|.+||++||++|+++|+++
T Consensus       161 ~~~~~~~~V~P~~~~~~vvvqpYNtvLsl~~L~~~ad~v~~~dN~al~~i~~~~~~~~~~s~~~~N~~Ia~~ls~~T~s~  240 (243)
T d1tubb1         161 DRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL  240 (243)
T ss_dssp             SSCEEECCCCCCTTCSCSSTTHHHHHHHHHHHSSSEEEECCCCHHHHHHHTTTTSCCSSCCHHHHHHHHHHHHHHHHTBT
T ss_pred             cceEEEEeecCCcccCcccccchHHHHhHHHHHhhCCeEEEeeHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhcc
Confidence            99999999999977899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q psy17297        240 RFP  242 (456)
Q Consensus       240 r~~  242 (456)
                      |||
T Consensus       241 RFP  243 (243)
T d1tubb1         241 RFP  243 (243)
T ss_dssp             TBS
T ss_pred             cCC
Confidence            998
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure